-- dump date 20140620_023245 -- class Genbank::CDS -- table cds_note -- id note YP_001892304.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_001892305.1 KEGG: rso:RS02222 hypothetical protein YP_001892306.1 KEGG: pol:Bpro_3432 hypothetical protein YP_001892307.1 PFAM: ribonuclease BN; KEGG: rso:RS02223 ribonuclease RNase BN (RBN) transmembrane protein YP_001892308.1 KEGG: rso:RS02224 hypothetical protein YP_001892309.1 PFAM: protein of unknown function DUF1328; KEGG: rso:RS02225 probable transmembrane protein YP_001892310.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RS02226 probable sigma-54 interacting response regulator transcription regulator protein YP_001892311.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RS02227 probable sigma-54 interacting transcription regulator protein YP_001892312.1 KEGG: rso:RS02229 hypothetical signal peptide protein YP_001892313.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_001892314.1 PFAM: glycosyl transferase group 1; KEGG: eba:ebA6934 conserved hypothetical protein, predicted glycosyltransferase YP_001892315.1 KEGG: rso:RS02231 hypothetical protein YP_001892316.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: eba:ebA6940 conserved hypothetical protein, predicted phosphatidic acid-phosphatase related phosphoesterase family YP_001892317.1 PFAM: glycosyl transferase group 1; KEGG: eba:ebA6942 glycosyl transferase YP_001892318.1 KEGG: rso:RS02233 hypothetical protein YP_001892319.1 PFAM: protein of unknown function UPF0118; KEGG: aav:Aave_2002 protein of unknown function UPF0118 YP_001892320.1 KEGG: rso:RS02235 probable composite two-component regulatory (sensor kinase and response regulator hybrid) transcription regulator protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001892321.1 KEGG: bch:Bcen2424_4033 hypothetical protein YP_001892322.1 KEGG: rso:RS02236 proline-rich protein YP_001892323.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: rso:RS02237 probable transmembrane protein YP_001892324.1 PFAM: plasmid encoded RepA protein; KEGG: rso:RSp0001 probable RepA replicase protein YP_001892325.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rso:RSp0002 probable cold shock-like transcription regulator protein YP_001892326.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rso:RSp0003 probable partition protein YP_001892327.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: rso:RSp0004 partitioning protein YP_001892328.1 KEGG: rso:RS01977 hypothetical protein YP_001892329.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: rso:RSp0006 probable UTP--glucose-1-phosphate uridylyltransferase UDP-glucose pyrophosphorylase protein YP_001892330.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RSp0007 alpha-ketoglutarate permease transmembrane protein YP_001892331.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RSp0008 probable C4-dicarboxylate transport sensor kinase transcription regulator protein YP_001892332.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RSp0009 probable response regulator of the C4-dicarboxylate transport two-component regulatory system transcription regulator protein YP_001892333.1 KEGG: rso:RS01982 lipoprotein transmembrane YP_001892334.1 KEGG: rso:RS01983 hypothetical signal peptide protein YP_001892335.1 KEGG: rso:RS01984 probable transmembrane protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001892336.1 PFAM: Extracellular ligand-binding receptor; KEGG: rso:RS01985 probable amino acid-binding periplasmic (PBP) ABC transporter protein YP_001892337.1 PFAM: inner-membrane translocator; KEGG: rso:RS01986 probable amino-acid transmembrane lipoprotein ABC transporter YP_001892338.1 PFAM: inner-membrane translocator; KEGG: rso:RS01987 probable amino-acid transmembrane ABC transporter protein YP_001892339.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RS01988 probable amino-acid ATP-binding ABC transporter protein YP_001892340.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RS01989 probable amino-acid ATP-binding ABC transporter protein YP_001892341.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RS01990 probable transcriptional regulator transcription regulator protein YP_001892342.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_4057 alcohol dehydrogenase, zinc-binding domain protein YP_001892343.1 PFAM: YCII-related; KEGG: rso:RS01991 hypothetical protein YP_001892344.1 PFAM: Chloride channel core; KEGG: rso:RS01992 voltage-gated ClC-type chloride channel ClcB YP_001892345.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: reu:Reut_A2876 TonB-dependent siderophore receptor YP_001892346.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: reu:Reut_A2877 hydroxylase YP_001892347.1 KEGG: rso:RS01993 hypothetical protein YP_001892348.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: nmu:Nmul_A1613 pyruvate, water dikinase YP_001892349.1 PFAM: regulatory protein TetR; KEGG: bch:Bcen2424_3720 TetR family transcriptional regulator YP_001892350.1 KEGG: reh:H16_B2515 prolyl aminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold YP_001892351.1 KEGG: bte:BTH_II0144 sensor protein EvgS precursor; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; SMART: extracellular solute-binding protein family 3 YP_001892352.1 PFAM: Fimbrial protein; KEGG: pfl:PFL_3922 type I pilus biogenesis protein YP_001892353.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: pfo:Pfl_3043 pili assembly chaperone YP_001892354.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pfo:Pfl_3044 fimbrial biogenesis outer membrane usher protein YP_001892355.1 PFAM: transposase IS3/IS911 family protein; KEGG: rme:Rmet_6073 transposase IS3/IS911 YP_001892356.1 PFAM: Integrase catalytic region; KEGG: rme:Rmet_6074 integrase, catalytic region YP_001892357.1 PFAM: Fimbrial protein; KEGG: rme:Rmet_4253 fimbrial protein YP_001892358.1 PFAM: penicillin-binding protein transpeptidase; KEGG: rso:RS02005 probable oxacillin hydrolase (class-D beta-lactamase) signal peptide protein YP_001892359.1 PFAM: regulatory protein ArsR; KEGG: bpt:Bpet1842 transcriptional regulator, ArsR-family YP_001892360.1 PFAM: major facilitator superfamily MFS_1; KEGG: bvi:Bcep1808_5026 major facilitator superfamily MFS_1 YP_001892361.1 KEGG: azc:AZC_1023 hypothetical protein YP_001892362.1 PFAM: Na+/solute symporter; KEGG: azc:AZC_1022 monocarboxylic acid permease YP_001892363.1 KEGG: reu:Reut_B5732 hypothetical protein YP_001892364.1 KEGG: rso:RSc2698 hypothetical protein YP_001892365.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_C6566 GCN5-related N-acetyltransferase YP_001892366.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: bmu:Bmul_5709 arsenical-resistance protein YP_001892367.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rso:RSp1128 arsenate reductase (arsenical PUMP modifier) protein YP_001892368.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reh:H16_A2179 lactoylglutathione lyase YP_001892369.1 SMART: regulatory protein ArsR; KEGG: rso:RSp1129 arsenical resistance operon repressor transcription regulator protein YP_001892370.1 Required for efficient pilin antigenic variation YP_001892371.1 KEGG: rme:Rmet_4026 periplasmic ligand-binding sensor protein YP_001892372.1 catalyzes the conversion of salicylyl-CoA to gentisyl-CoA YP_001892373.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RS02008 probable oxidoreductase protein YP_001892374.1 PFAM: regulatory protein MarR; KEGG: rso:RS02009 transcription regulator protein YP_001892375.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001892376.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RS02011 probable acyl-CoA dehydrogenase oxidoreductase protein YP_001892377.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rso:RS02012 probable acetyl-coenzyme A synthetase (acetate--CoA ligase) protein YP_001892378.1 KEGG: rso:RS02013 4-hydroxybenzoyl-CoA thioesterase protein YP_001892379.1 PFAM: Endoribonuclease L-PSP; KEGG: rso:RS02014 hypothetical protein YP_001892380.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rme:Rmet_1732 AraC family transcriptional regulator YP_001892381.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: reu:Reut_B4714 carboxymuconolactone decarboxylase YP_001892382.1 PFAM: protein of unknown function DUF849; KEGG: reu:Reut_B4715 protein of unknown function DUF849, prokaryotic YP_001892383.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A3610 dehydrogenase YP_001892384.1 PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B4716 major facilitator superfamily MFS_1 YP_001892385.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RSp0075 alpha-ketoglutarate permease transmembrane protein YP_001892386.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS05543 probable transmembrane protein YP_001892387.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: rso:RS05542 DNA-binding transcriptional regulatory transcription regulator protein YP_001892388.1 PFAM: helix-turn-helix HxlR type; KEGG: rso:RS05541 hypothetical protein YP_001892389.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RS05540 hypothetical protein YP_001892390.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_B2073 glyoxalase/bleomycin resistanceprotein/dioxygenase superfamily protein YP_001892391.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_B4146 regulatory protein, LysR:LysR, substrate-binding YP_001892392.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSp0106 molybdate-binding periplasmic signal peptide protein YP_001892393.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS03015 transport transmembrane protein YP_001892394.1 PFAM: regulatory protein TetR; KEGG: rso:RS03014 transcription regulator protein YP_001892395.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RS03013 hypothetical protein YP_001892396.1 PFAM: protein of unknown function DUF58; KEGG: rso:RS03012 hypothetical protein YP_001892397.1 PFAM: transglutaminase domain protein; KEGG: rso:RS03011 hypothetical protein YP_001892398.1 KEGG: rso:RS03006 lipoprotein YP_001892399.1 TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: rso:RS03003 hypothetical protein YP_001892400.1 Catalyzes the conversion of citrate to isocitrate YP_001892401.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity YP_001892402.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_001892403.1 KEGG: rso:RSp0123 propionate catabolism operon regulatory transcription regulator protein; TIGRFAM: propionate catabolism operon regulatory protein PrpR; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; Propionate catabolism activator domain protein; ATPase associated with various cellular activities AAA_5; SMART: PAS domain containing protein; AAA ATPase YP_001892404.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: reu:Reut_B4062 metal-dependent phosphohydrolase, HD subdomain YP_001892405.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_0005 diguanylate cyclase YP_001892406.1 PFAM: isochorismatase hydrolase; KEGG: reu:Reut_B4618 isochorismatase hydrolase YP_001892407.1 PFAM: Chloride channel core; KEGG: bur:Bcep18194_A4091 Cl-channel, voltage gated YP_001892408.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: reu:Reut_B4637 3-demethylubiquinone-9 3-methyltransferase YP_001892409.1 KEGG: rso:RS02998 lipoprotein transmembrane YP_001892410.1 PFAM: restriction endonuclease; DNA topoisomerase type IA zn finger domain protein; KEGG: reu:Reut_A0538 restriction endonuclease YP_001892411.1 PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ses:SARI_00228 hypothetical protein YP_001892413.1 KEGG: hch:HCH_06818 hypothetical protein YP_001892414.1 KEGG: rso:RSc3434 hypothetical protein YP_001892415.1 KEGG: rso:RS02986 probable transmembrane protein YP_001892416.1 TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: EAL domain protein; phosphotransferase system EIIC; KEGG: dsy:DSY1020 hypothetical protein YP_001892417.1 KEGG: afm:AFUA_6G06670 conserved hypothetical protein YP_001892418.1 TIGRFAM: addiction module antidote protein; KEGG: pen:PSEEN3939 hypothetical protein YP_001892419.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bur:Bcep18194_C6931 protein of unknown function DUF6, transmembrane YP_001892420.1 KEGG: rso:RS02988 probable transmembrane protein YP_001892421.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001892422.1 PFAM: alpha/beta hydrolase fold; KEGG: bch:Bcen2424_4182 alpha/beta hydrolase fold YP_001892423.1 PFAM: helix-turn-helix HxlR type; KEGG: bch:Bcen2424_4183 transcriptional regulator, HxlR family YP_001892425.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bur:Bcep18194_C6950 AraC family transcriptional regulator YP_001892426.1 PFAM: ThiJ/PfpI domain protein; KEGG: bur:Bcep18194_C6949 ThiJ/PfpI family protein YP_001892427.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_001892428.1 KEGG: eca:ECA0765 hypothetical protein YP_001892429.1 KEGG: rme:Rmet_4636 hypothetical protein YP_001892430.1 PFAM: protein of unknown function DUF1697; KEGG: bja:bll4334 hypothetical protein YP_001892431.1 KEGG: rso:RSc3150 transmembrane protein YP_001892432.1 Enables the enzymatic reduction of mercuric ions to elemental mercury YP_001892433.1 PFAM: sodium/calcium exchanger membrane region; KEGG: reu:Reut_B4399 sodium/calcium exchanger membrane region YP_001892434.1 KEGG: rso:RS01997 hypothetical signal peptide protein YP_001892436.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_3766 LysR family transcriptional regulator YP_001892437.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: spe:Spro_2460 ribosyldihydronicotinamide dehydrogenase (quinone) YP_001892438.1 PFAM: protein of unknown function DUF81; KEGG: rso:RS04702 probable transmembrane protein YP_001892439.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_5410 carboxymuconolactone decarboxylase YP_001892441.1 PFAM: alpha/beta hydrolase fold; KEGG: rle:RL1292 arylesterase YP_001892442.1 PFAM: thioesterase superfamily protein; KEGG: rso:RS05225 probable acyl-CoA thioester hydrolase-related protein YP_001892443.1 KEGG: har:HEAR1579 hypothetical protein; signal peptide YP_001892444.1 KEGG: bmu:Bmul_6293 hypothetical protein YP_001892445.1 PFAM: outer membrane efflux protein; KEGG: bvi:Bcep1808_3978 outer membrane efflux protein YP_001892446.1 PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bpd:BURPS668_A0714 multicopper oxidase family protein YP_001892447.1 PFAM: blue (type 1) copper domain protein; KEGG: pna:Pnap_1260 blue (type 1) copper domain protein YP_001892448.1 KEGG: bmu:Bmul_6290 hypothetical protein YP_001892449.1 SMART: lipopolysaccharide-modifying protein; KEGG: ftw:FTW_1815 lipopolysaccharide core biosynthesis protein YP_001892450.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: rso:RS05217 probable hydroxylase protein YP_001892451.1 KEGG: rso:RS05216 hypothetical protein YP_001892452.1 KEGG: rso:RS05215 hypothetical protein YP_001892453.1 PFAM: Carotenoid oxygenase; KEGG: rso:RS05214 probable dioxygenase signal peptide protein YP_001892454.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dac:Daci_1258 peptidase dimerisation domain protein YP_001892455.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B2306 transcriptional regulator, LysR-family YP_001892456.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_001892457.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B2488 ABC-type transporter, permease component YP_001892458.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B2489 ABC-type transporter, permease component YP_001892459.1 PFAM: extracellular solute-binding protein family 3; KEGG: reh:H16_B2490 ABC-type transporter, periplasmic component: PAAT family YP_001892460.1 KEGG: reu:Reut_B3507 hypothetical protein YP_001892461.1 PFAM: ATP-binding region ATPase domain protein; KEGG: rso:RS05203 probable two-component transmembrane sensor histidine kinase transcription regulator protein YP_001892462.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bmu:Bmul_0867 methyltransferase type 11 YP_001892463.1 PFAM: amidohydrolase 2; KEGG: rso:RS05190 probable hydrolase transmembrane protein YP_001892464.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RS05189 probable metabolite transport transmembrane protein YP_001892465.1 KEGG: rso:RS05188 maltooligosyl trehalose synthase transmembrane protein; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001892466.1 KEGG: rso:RS05187 4-alpha-glucanotransferase (amylomaltase) protein; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77 YP_001892467.1 KEGG: rso:RS05186 maltooligosyl trehalose trehalohydrolase protein; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001892468.1 KEGG: rso:RSp0238 probable glycogen operon protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001892469.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_001892470.1 KEGG: rso:RS05183 hypothetical protein; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001892471.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rso:RS05182 alpha-amylase-related protein YP_001892472.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_001892473.1 KEGG: rso:RSp0245 probable alkyl hydroperoxide reductase (subunit C) oxidoreductase protein; TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_001892474.1 TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rso:RSp0246 probable alkyl hydroperoxide reductase (subunit F) oxidoreductase protein YP_001892475.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pap:PSPA7_2742 probable transcriptional regulator YP_001892476.1 PFAM: ferric-uptake regulator; KEGG: rso:RSp0247 probable ferric uptake transcriptional (FUR)-related transcription regulator protein YP_001892477.1 KEGG: rso:RS03718 hypothetical protein YP_001892478.1 KEGG: rso:RS03717 hypothetical protein YP_001892479.1 KEGG: rso:RS03716 transmembrane protein YP_001892480.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: rso:RSp0251 probable ferrous iron transport B transmembrane protein YP_001892481.1 PFAM: FeoA family protein; KEGG: rso:RS03714 hypothetical protein YP_001892482.1 KEGG: rso:RS03712 probable transmembrane protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001892483.1 KEGG: rso:RS03711 probable methyl-accepting chemotaxis transducer transmembrane protein; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001892484.1 KEGG: rso:RS03710 hypothetical protein YP_001892485.1 PFAM: Siderophore-interacting protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: rso:RS03709 hypothetical protein YP_001892486.1 PFAM: transcriptional regulator PadR family protein; KEGG: rso:RS03708 hypothetical protein YP_001892487.1 PFAM: regulatory protein MarR; KEGG: rme:Rmet_3441 MarR family transcriptional regulator YP_001892488.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: reu:Reut_A3275 alkylhydroperoxidase AhpD core YP_001892489.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rme:Rmet_3439 GCN5-related N-acetyltransferase YP_001892490.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: reu:Reut_A3273 (acyl-carrier protein) phosphodiesterase YP_001892491.1 KEGG: rso:RSp0259 probable pyrrolidone-carboxylate peptidase protein; TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I YP_001892492.1 PFAM: regulatory protein MarR; KEGG: rso:RS03706 probable transcription regulator protein YP_001892493.1 KEGG: reh:H16_B1494 hypothetical protein YP_001892494.1 PFAM: penicillin-binding protein transpeptidase; KEGG: pla:Plav_3016 beta-lactamase YP_001892496.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_001892497.1 PFAM: beta-lactamase; KEGG: bra:BRADO6186 beta-lactamase YP_001892498.1 PFAM: Domain of unknown function DUF1854; KEGG: rme:Rmet_0706 hypothetical protein YP_001892499.1 PFAM: ABC transporter transmembrane region; ABC transporter; SMART: AAA ATPase; KEGG: rme:Rmet_0705 ABC transporter-related protein YP_001892500.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_001892501.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_001892502.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: cvi:CV_3073 hypothetical protein YP_001892503.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RS03701 probable acetyltransferase protein YP_001892504.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RS05569 probable transcription regulator protein YP_001892505.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RS05570 probable acyl-CoA dehydrogenase oxidoreductase protein YP_001892506.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rso:RS05571 probable acetyl-coenzyme A synthetase (acetate--CoA ligase) protein YP_001892507.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: rso:RSp0650 probable methylmalonate-semialdehyde dehydrogenase oxidoreductase protein YP_001892508.1 KEGG: rso:RSp0649 probable 3-hydroxyisobutyrate dehydrogenase oxidoreductase protein; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding YP_001892509.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001892510.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rso:RS05575 enoyl-coenzyme A hydratase protein YP_001892511.1 KEGG: pau:PA14_46540 hypothetical protein YP_001892512.1 activates fatty acids by binding to coenzyme A YP_001892513.1 PFAM: Chloride channel core; KEGG: rso:RSc1803 probable transmembrane protein YP_001892514.1 PFAM: regulatory protein IclR; Helix-turn-helix type 11 domain protein; KEGG: bmu:Bmul_4707 IclR family transcriptional regulator YP_001892515.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: bch:Bcen2424_5398 dimethylmenaquinone methyltransferase YP_001892516.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bch:Bcen2424_5397 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_001892517.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bch:Bcen2424_5396 SMP-30/gluconolaconase/LRE domain protein YP_001892518.1 PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_5395 major facilitator superfamily MFS_1 YP_001892519.1 PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_5390 major facilitator superfamily MFS_1 YP_001892520.1 PFAM: amidohydrolase 2; KEGG: bmu:Bmul_4697 amidohydrolase 2 YP_001892521.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: xcb:XC_1442 extracellular serine protease YP_001892522.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: atc:AGR_L_1441 hypothetical protein YP_001892523.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rso:RS04801 probable transmembrane protein YP_001892524.1 KEGG: rso:RS04800 hypothetical protein YP_001892525.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: rso:RS04799 probable transmembrane protein YP_001892526.1 PFAM: virulence factor family protein; KEGG: rso:RS04798 probable AcvB-related protein YP_001892527.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: rso:RS04796 sulfate transporter transmembrane protein YP_001892528.1 KEGG: rso:RS04795 probable alanine-rich signal peptide protein YP_001892529.1 PFAM: regulatory protein MarR; regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B1766 transcriptional regulator, LysR-family YP_001892530.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reh:H16_B1767 oxidoreductase YP_001892531.1 PFAM: YheO domain protein; KEGG: rso:RS04794 hypothetical protein YP_001892532.1 catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine YP_001892533.1 PFAM: Endoribonuclease L-PSP; KEGG: rso:RS04792 hypothetical protein YP_001892534.1 PFAM: type IV pilus assembly PilZ; KEGG: reh:H16_A1321 hypothetical protein YP_001892535.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RS04791 transcription regulator protein YP_001892536.1 PFAM: transmembrane pair domain protein; KEGG: rso:RS04790 hypothetical protein YP_001892537.1 PFAM: regulatory protein LuxR; KEGG: rso:RS04789 transcription regulator protein YP_001892538.1 KEGG: rso:RS04788 hypothetical protein YP_001892539.1 KEGG: rso:RS03031 hypothetical protein YP_001892540.1 KEGG: rso:RS03032 periplasmic substrate-binding transmembrane protein YP_001892541.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RS03033 probable transmembrane ABC transporter protein YP_001892542.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RS03034 probable ATP-binding ABC transporter protein YP_001892543.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: rso:RS03035 probable transcription regulator protein YP_001892544.1 KEGG: rso:RSp1505 probable nitric oxide reductase (subunit B) transmembrane protein YP_001892545.1 KEGG: rme:Rmet_4922 hypothetical protein YP_001892546.1 KEGG: rso:RS03038 probable major anaerobically induced outer membrane transmembrane protein; TIGRFAM: nitrite reductase, copper-containing; PFAM: blue (type 1) copper domain protein; multicopper oxidase type 1; cytochrome c class I; multicopper oxidase type 2; multicopper oxidase type 3 YP_001892547.1 PFAM: protein of unknown function DUF323; KEGG: rso:RS03039 probable signal peptide protein YP_001892548.1 PFAM: electron transport protein SCO1/SenC; KEGG: rso:RS03040 probable signal peptide protein YP_001892549.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: reh:H16_A0072 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase YP_001892550.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reh:H16_A0071 transcriptional regulator, GntR-family YP_001892551.1 PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A0048 major facilitator superfamily MFS_1 YP_001892552.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: reu:Reut_A0046 Asp/Glu racemase YP_001892553.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_001892554.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: rme:Rmet_3885 Asp/Glu racemase YP_001892555.1 KEGG: cvi:CV_2452 probable linoleoyl-CoA desaturase YP_001892556.1 PFAM: cyclic nucleotide-binding; KEGG: bra:BRADO5261 transcriptional regulator with cAMP binding domain belongs to HTH Crp family YP_001892557.1 PFAM: DSBA oxidoreductase; KEGG: bch:Bcen2424_5467 DsbA oxidoreductase YP_001892558.1 KEGG: fal:FRAAL3149 acetyl-CoA:acetoacetyl-CoA transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_001892559.1 PFAM: coenzyme A transferase; KEGG: cbe:Cbei_2654 3-oxoacid CoA-transferase, A subunit YP_001892560.1 PFAM: sodium/hydrogen exchanger; KEGG: rso:RS03045 probable cation-efflux system transmembrane protein YP_001892561.1 PFAM: NADPH-dependent FMN reductase; KEGG: rso:RS03046 hypothetical protein YP_001892563.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bch:Bcen2424_4519 GCN5-related N-acetyltransferase YP_001892564.1 KEGG: rso:RS03125 probable transmembrane protein YP_001892565.1 KEGG: rso:RS03126 hypothetical protein YP_001892566.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: mlo:mll6978 ABC-transport protein, ATP-binding protein YP_001892567.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_1202 ABC transporter (permease) YP_001892568.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; KEGG: mlo:mll6979 ABC transporter, periplasmic substrate-binding protein YP_001892569.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bam:Bamb_4808 IclR family transcriptional regulator YP_001892570.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_B2210 predicted acyl-CoA transferase/carnitine dehydratase YP_001892571.1 KEGG: rme:Rmet_4144 citrate synthase YP_001892572.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pol:Bpro_4512 gluconolactonase YP_001892573.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems YP_001892574.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems YP_001892575.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_001892576.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_001892577.1 PFAM: response regulator receiver; KEGG: rso:RSp1409 chemotaxis response regulator transcription regulator protein YP_001892578.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheY binding; KEGG: rso:RSp1408 probable chemotaxis sensor histidine kinase transcription regulator protein YP_001892579.1 PFAM: CheW domain protein; KEGG: rso:RSp1407 probable chemotaxis protein CheW YP_001892580.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rso:RSp1406 probable methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane YP_001892581.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: reu:Reut_B5602 histidine kinase, HAMP region:bacterial chemotaxis sensory transducer YP_001892582.1 PFAM: MCP methyltransferase CheR-type; KEGG: rso:RSp1405 probable chemotaxis protein methyltransferase YP_001892583.1 stimulates methylation of MCP proteins; PFAM: CheD family protein; KEGG: rso:RS02054 probable chemotaxis protein YP_001892584.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_001892585.1 PFAM: response regulator receiver; KEGG: rso:RSp1402 probable chemotaxis response regulator transcription regulator protein YP_001892586.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation YP_001892587.1 PFAM: ApbE family lipoprotein; KEGG: rso:RSp1366 probable thiamine biosynthesis ApbE transmembrane protein YP_001892588.1 PFAM: cytochrome c class I; KEGG: rso:RS02091 probable lipoprotein YP_001892589.1 reduces nitrous oxide to nitrogen YP_001892590.1 PFAM: FMN-binding domain protein; KEGG: rso:RSp1369 probable transmembrane regulatory NosR transcription regulator protein YP_001892591.1 PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: rso:RSp1370 probable copper-binding periplasmic NosD signal peptide protein YP_001892592.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rme:Rmet_4914 ABC transporter YP_001892593.1 KEGG: rso:RSp1372 probable NosY transmembrane protein YP_001892594.1 PFAM: NosL family protein; KEGG: rme:Rmet_4912 NosL YP_001892595.1 KEGG: rme:Rmet_4911 hypothetical protein YP_001892596.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: rso:RSp1394 probable flagellar biosynthetic FlhB transmembrane protein YP_001892597.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: rso:RSp1393 probable flagellar biosynthesis FlhA transmembrane protein YP_001892598.1 positive regulator of class III flagellar genes YP_001892599.1 KEGG: rso:RS02067 hypothetical protein YP_001892600.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes YP_001892601.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: rso:RSc2118 xanthine permease transmembrane protein YP_001892602.1 PFAM: aldose 1-epimerase; KEGG: bxe:Bxe_B2624 aldose 1-epimerase YP_001892603.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_B2623 AraC family transcriptional regulator YP_001892604.1 KEGG: bxe:Bxe_B2621 ABC xylose transporter, periplasmic ligand binding protein; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator YP_001892605.1 with XylFH is part of the high affinity xylose ABC transporter YP_001892606.1 PFAM: inner-membrane translocator; KEGG: bmu:Bmul_4211 monosaccharide-transporting ATPase YP_001892607.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C1363 dehydrogenase YP_001892608.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bxe:Bxe_C1362 senescence marker protein-30 (SMP-30) YP_001892609.1 KEGG: bch:Bcen2424_6697 hypothetical protein YP_001892610.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bpt:Bpet4676 IclR family transcriptional regulator YP_001892611.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bch:Bcen2424_6695 LacI family transcriptional regulator YP_001892612.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_001892613.1 KEGG: aav:Aave_1254 hypothetical protein YP_001892614.1 PFAM: isochorismatase hydrolase; KEGG: bxe:Bxe_A0706 isochorismatase hydrolase YP_001892615.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bpt:Bpet2223 transcriptional regulator, AraC-family YP_001892616.1 PFAM: 17 kDa surface antigen; KEGG: rso:RS02072 lipoprotein YP_001892617.1 PFAM: protein of unknown function YGGT; KEGG: rso:RS02073 hypothetical protein YP_001892618.1 PFAM: PEBP family protein; KEGG: spe:Spro_2903 PEBP family protein YP_001892619.1 KEGG: rso:RSp1383 alkanesulfonates binding protein precursor; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3 YP_001892620.1 KEGG: pfo:Pfl_3157 hypothetical protein YP_001892621.1 PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: pen:PSEEN0177 hypothetical protein YP_001892622.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bch:Bcen2424_1973 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001892623.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: reh:H16_B2242 oxidoreductase YP_001892624.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: reh:H16_B2241 transcriptional regulator, GntR-family YP_001892625.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: aav:Aave_2255 periplasmic binding protein/LacI transcriptional regulator YP_001892626.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: bam:Bamb_6194 ABC transporter YP_001892627.1 PFAM: inner-membrane translocator; KEGG: aav:Aave_2250 inner-membrane translocator YP_001892628.1 PFAM: inner-membrane translocator; KEGG: aav:Aave_2249 inner-membrane translocator YP_001892629.1 PFAM: dehydroquinase class II; KEGG: ppu:PP_3003 3-dehydroquinate dehydratase YP_001892630.1 KEGG: rme:Rmet_5010 hypothetical protein YP_001892631.1 KEGG: syg:sync_0841 hypothetical protein YP_001892632.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: rme:Rmet_4484 bifunctional deaminase-reductase-like protein YP_001892633.1 Required for efficient pilin antigenic variation YP_001892634.1 KEGG: reu:Reut_B4592 hypothetical protein YP_001892635.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001892636.1 PFAM: alpha/beta hydrolase fold; KEGG: ppg:PputGB1_3299 alpha/beta hydrolase fold YP_001892637.1 PFAM: fatty acid desaturase; KEGG: bch:Bcen2424_0980 alkane 1-monooxygenase YP_001892638.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: pna:Pnap_4882 hypothetical protein YP_001892639.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bur:Bcep18194_B2981 AraC family transcriptional regulator YP_001892640.1 PFAM: NmrA family protein; KEGG: bur:Bcep18194_B2980 NmrA-like protein YP_001892641.1 KEGG: pnu:Pnuc_1326 hypothetical protein YP_001892642.1 KEGG: rso:RS02076 hypothetical signal peptide protein YP_001892643.1 PFAM: PEBP family protein; KEGG: rso:RS01998 hypothetical protein YP_001892644.1 PFAM: protein of unknown function DUF1304; KEGG: rso:RS04765 probable transmembrane protein YP_001892645.1 PFAM: dienelactone hydrolase; KEGG: rso:RS04764 transmembrane protein YP_001892646.1 KEGG: rso:RSc3434 hypothetical protein YP_001892647.1 PFAM: amine oxidase; KEGG: rso:RS04763 hypothetical protein YP_001892648.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_001892649.1 PFAM: protein of unknown function DUF350; KEGG: rso:RS05342 probable transmembrane protein YP_001892650.1 KEGG: rso:RS05341 transmembrane protein YP_001892651.1 KEGG: rso:RS05340 probable transmembrane protein YP_001892652.1 KEGG: rso:RS05339 probable serine-rich transmembrane protein YP_001892653.1 TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; KEGG: rso:RS05338 transmembrane protein YP_001892654.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: pen:PSEEN2246 diguanylate cyclase (GGDEF domain) YP_001892655.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_001892656.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS05323 probable transporter transmembrane protein YP_001892657.1 PFAM: UvrD/REP helicase; KEGG: rso:RS05321 probable ATP-dependent DNA helicase II protein YP_001892658.1 KEGG: bam:Bamb_5087 hypothetical protein YP_001892659.1 PFAM: protein of unknown function UPF0060; KEGG: bur:Bcep18194_A4425 hypothetical protein YP_001892660.1 KEGG: bam:Bamb_1422 PfkB domain protein YP_001892661.1 PFAM: GumN family protein; KEGG: aav:Aave_0743 GumN family protein YP_001892662.1 KEGG: rso:RS05318 hypothetical protein YP_001892663.1 KEGG: rso:RS05317 probable transmembrane protein YP_001892664.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RS05316 ferrisiderophore receptor protein YP_001892665.1 PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: rso:RS05315 signal peptide protein YP_001892666.1 KEGG: rso:RS05314 probable signal peptide protein YP_001892668.1 PFAM: protein of unknown function DUF81; KEGG: rso:RS05313 probable integral membrane transmembrane protein YP_001892669.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RS05312 probable transcription regulator protein YP_001892670.1 KEGG: rso:RS05311 probable transmembrane protein YP_001892671.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rso:RS05310 probable acetyl-coenzyme A synthetase (acetate--CoA ligase) protein YP_001892672.1 KEGG: rso:RS05307 hypothetical protein YP_001892674.1 KEGG: rso:RS05306 probable signal peptide protein YP_001892675.1 KEGG: rso:RS05305 probable lipoprotein transmembrane YP_001892677.1 KEGG: rso:RS05304 probable transmembrane protein YP_001892678.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rso:RSp1258 [acyl-carrier-protein] phosphodiesterase YP_001892679.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RS05302 probable transcription regulator protein YP_001892680.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS05301 probable integral membrane transmembrane protein YP_001892681.1 KEGG: rso:RS05300 hypothetical protein YP_001892682.1 KEGG: rso:RS03196 probable signal peptide protein YP_001892683.1 KEGG: rso:RS03194 hypothetical protein YP_001892684.1 PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: rso:RS03187 transmembrane cytochrome BD-II oxidase (subunit II) oxidoreductase protein YP_001892685.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: rso:RS03186 transmembrane cytochrome BD-II oxidase (subunit I) oxidoreductase protein YP_001892686.1 KEGG: rso:RS03185 hypothetical protein YP_001892687.1 PFAM: transglycosylase; KEGG: bxe:Bxe_B1859 hypothetical protein YP_001892688.1 KEGG: rso:RSc2198 hypothetical protein YP_001892689.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS03167 probable high affinity nitrate transporter transmembrane protein YP_001892690.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rso:RSp1222 probable nitrite reductase NADPH (large subunit) oxidoreductase protein YP_001892691.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: rso:RSp1221 probable nitrite reductase NADPH (small subunit) oxidoreductase protein YP_001892692.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rso:RS03164 probable flavoprotein FAD oxidoreductase YP_001892693.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rso:RSp1219 probable nitrate reductase large subunit oxidoreductase protein YP_001892694.1 KEGG: rso:RS03158 hypothetical protein YP_001892695.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rso:RS03157 probable transmembrane protein YP_001892696.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr5045 inner membrane protein YP_001892697.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_001892698.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: pol:Bpro_4230 phospholipase D/transphosphatidylase YP_001892699.1 PFAM: Entericidin EcnAB; KEGG: rso:RS03154 probable lipoprotein transmembrane YP_001892700.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rso:RS03153 methyl-accepting chemotaxis transducer transmembrane protein YP_001892701.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rso:RS03152 hypothetical protein YP_001892702.1 PFAM: type IV pilus assembly PilZ; KEGG: rso:RS03149 hypothetical protein YP_001892703.1 PFAM: GtrA family protein; KEGG: rme:Rmet_5967 GtrA-like protein YP_001892704.1 KEGG: rso:RS03148 hypothetical protein YP_001892705.1 KEGG: rso:RS03147 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001892706.1 KEGG: rso:RS03145 probable signal peptide protein YP_001892707.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS03144 outer membrane channel lipoprotein transmembrane YP_001892708.1 PFAM: acriflavin resistance protein; KEGG: rso:RS03143 probable drug efflux transmembrane protein YP_001892709.1 PFAM: acriflavin resistance protein; KEGG: rso:RS03142 probable drug efflux PUMP transmembrane protein YP_001892710.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RS03141 resistance transmembrane protein YP_001892711.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RS03140 probable two component response regulator transcription regulator protein YP_001892712.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rso:RS03139 probable two component transmembrane sensor kinase transcription regulator protein YP_001892713.1 PFAM: protein of unknown function DUF333; KEGG: rso:RS03138 probable proline rich transmembrane protein YP_001892714.1 PFAM: transposase IS4 family protein; KEGG: bxe:Bxe_C0489 transposase IS4 YP_001892715.1 DHBP synthase; functions during riboflavin biosynthesis YP_001892716.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_001892717.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: rso:RSp1189 probable high-affinity gluconate transporter (GNT-III system) transmembrane protein YP_001892718.1 PFAM: Endoribonuclease L-PSP; KEGG: rso:RS03132 hypothetical protein YP_001892719.1 PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: rso:RSp1187 probable N-acyl-D-glutamate deacylase protein YP_001892720.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: rso:RS03130 hypothetical protein YP_001892721.1 KEGG: rso:RSp1185 probable D-serine deaminase (D-serine dehydratase) protein YP_001892722.1 PFAM: PfkB domain protein; KEGG: rso:RS05074 fructokinase-like protein (sugar kinase) YP_001892723.1 PFAM: peptidase S45 penicillin amidase; KEGG: vei:Veis_3277 penicillin amidase YP_001892724.1 KEGG: rso:RS05068 probable composite two-component transcriptional regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein YP_001892725.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: rso:RS05067 probable transmembrane protein YP_001892726.1 KEGG: reu:Reut_B4511 hypothetical protein YP_001892727.1 KEGG: rso:RS05066 hypothetical protein YP_001892728.1 PFAM: protein of unknown function DUF1458; KEGG: rso:RS05065 hypothetical protein YP_001892729.1 TIGRFAM: acid phosphatase; PFAM: phosphoesterase; KEGG: rso:RSp1174 acid phosphatase protein YP_001892730.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: rso:RS05063 probable lipoprotein transmembrane YP_001892731.1 PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: rso:RS05062 probable transmembrane protein YP_001892732.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rme:Rmet_0006 protein of unknown function DUF6, transmembrane YP_001892733.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: rle:RL3396 AraC family transcriptional regulator YP_001892734.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rso:RS05645 probable two-component sensor histidine kinase transcription regulator protein YP_001892735.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RS05646 probable two-component response regulator transcription regulator protein YP_001892736.1 KEGG: rso:RS05425 probable lipoprotein signal peptide YP_001892737.1 PFAM: UspA domain protein; KEGG: rso:RS05426 hypothetical protein YP_001892738.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RS05428 probable transcription regulator protein YP_001892739.1 KEGG: rso:RS05430 probable signal peptide protein YP_001892740.1 KEGG: rha:RHA1_ro00675 possible glycoprotein YP_001892741.1 KEGG: rso:RS05432 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001892742.1 KEGG: rso:RS05433 probable transmembrane protein YP_001892743.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: rso:RS05434 molybdenum-pterin-binding protein YP_001892744.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: ajs:Ajs_1688 NAD(P)H dehydrogenase (quinone) YP_001892745.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RS05462 probable ATP-binding ABC transporter protein YP_001892746.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RS05467 probable transmembrane protein YP_001892747.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS05506 outer-membrane drug efflux protein YP_001892748.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rso:RSp1113 probable transmembrane multidrug-efflux system lipoprotein transmembrane YP_001892749.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSp1112 probable transmembrane multidrug efflux system transmembrane protein YP_001892750.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rso:RS02619 probable lipase protein YP_001892751.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RS02618 probable transcription regulator protein YP_001892752.1 KEGG: rso:RSc0320 hypothetical protein YP_001892753.1 PFAM: protein of unknown function DUF82; KEGG: rso:RS02617 hypothetical protein YP_001892754.1 KEGG: rso:RSp1105 probable alpha,alpha-trehalose-phosphate synthase protein; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20 YP_001892755.1 KEGG: rso:RSp1104 probable trehalose-phosphatase protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase YP_001892756.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bte:BTH_II0478 2,4-dienoyl-CoA reductase YP_001892757.1 KEGG: rso:RS02609 hypothetical protein YP_001892758.1 PFAM: integrase family protein; KEGG: rso:RS02608 probable integrase/recombinase protein YP_001892759.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: rso:RSp1101 probable UDP-glucose 4-epimerase protein YP_001892760.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: rso:RS02606 lipoprotein transmembrane YP_001892761.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: rso:RS02605 methyl-accepting chemotaxis transducer transmembrane protein YP_001892762.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: rso:RS02604 HNS-like transcription regulator protein YP_001892763.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rso:RS02603 probable transmembrane protein YP_001892764.1 PFAM: regulatory protein LuxR; KEGG: rso:RS02602 transcription regulator protein YP_001892765.1 PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: rso:RS02601 probable activation/secretion signal peptide protein YP_001892766.1 KEGG: rso:RS02600 hemagglutinin-related transmembrane protein YP_001892767.1 KEGG: rso:RS02599 hemagglutinin-related transmembrane protein YP_001892768.1 PFAM: Flp/Fap pilin component; KEGG: rso:RS02598 pilin protein YP_001892769.1 PFAM: peptidase A24A prepilin type IV; KEGG: rso:RSp1091 probable prepilin peptidase transmembrane protein YP_001892770.1 PFAM: TadE family protein; KEGG: rso:RS02595 hypothetical protein YP_001892771.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: rso:RS02596 probable signal peptide protein YP_001892772.1 PFAM: type II and III secretion system protein; KEGG: rso:RS02594 probable outer membrane channel signal peptide protein YP_001892773.1 KEGG: rso:RSp1086 probable pilus assembly protein YP_001892774.1 PFAM: type II secretion system protein E; KEGG: rso:RSp1085 probable secretion ATPase protein YP_001892775.1 PFAM: type II secretion system protein; KEGG: rso:RS02591 probable pilus assembly transmembrane protein YP_001892776.1 PFAM: type II secretion system protein; KEGG: rso:RS02590 tight adherence TadC related transmembrane protein YP_001892777.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rso:RS02589 probable lipoprotein transmembrane YP_001892778.1 KEGG: rso:RS02588 probable signal peptide protein YP_001892779.1 KEGG: rso:RS02587 probable transmembrane protein YP_001892780.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RS02586 probable sigma-54 interacting transcription regulator protein YP_001892781.1 KEGG: rso:RS02585 lipoprotein YP_001892782.1 PFAM: cytochrome P450; oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: rme:Rmet_3467 cytochrome P450 YP_001892783.1 KEGG: rso:RS02582 probable transmembrane protein YP_001892784.1 PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: rso:RS02580 glucose-fructose oxidoreductase oxidoreductase protein YP_001892785.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: reu:Reut_B5114 antibiotic biosynthesis monooxygenase YP_001892786.1 KEGG: bmu:Bmul_3696 cytochrome P450-like protein YP_001892787.1 PFAM: regulatory protein ArsR; KEGG: pol:Bpro_2808 ArsR family transcriptional regulator YP_001892788.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bmu:Bmul_3149 GCN5-related N-acetyltransferase YP_001892789.1 PFAM: PepSY-associated TM helix domain protein; KEGG: pap:PSPA7_5127 probable oxidoreductase YP_001892790.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RS02469 probable ferrisiderophore receptor protein YP_001892791.1 PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: rso:RS02398 probable oxidoreductase protein YP_001892792.1 PFAM: sodium/hydrogen exchanger; KEGG: reu:Reut_B3954 sodium/hydrogen exchanger YP_001892793.1 PFAM: Patatin; KEGG: rso:RS02397 transmembrane protein YP_001892794.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_001892795.1 converts acetoacetate to acetone and carbon dioxide YP_001892796.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rso:RS02394 transcription regulator protein YP_001892797.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_001892798.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: rso:RS02392 probable transmembrane aldehyde dehydrogenase oxidoreductase protein YP_001892799.1 KEGG: rso:RS02391 hypothetical protein YP_001892800.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: tbd:Tbd_0855 possible cold-shock DNA-binding domain protein YP_001892801.1 PFAM: K potassium transporter; KEGG: rso:RSp1052 probable potassium uptake transmembrane protein YP_001892802.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: rso:RSp1050 probable formate dehydrogenase associated protein (FdhD protein) YP_001892803.1 KEGG: rso:RS02386 hypothetical protein YP_001892804.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: rso:RS02045 formate dehydrogenase oxidoreductase protein YP_001892805.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS02384 probable transporter transmembrane protein YP_001892806.1 PFAM: Hpt domain protein; KEGG: rso:RS02382 hypothetical protein YP_001892807.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pnu:Pnuc_1300 heavy metal efflux pump, CzcA family YP_001892808.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pnu:Pnuc_1301 efflux transporter, RND family, MFP subunit YP_001892809.1 PFAM: outer membrane efflux protein; KEGG: pnu:Pnuc_1302 outer membrane efflux protein YP_001892810.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pfo:Pfl_0677 possible MerR family transcriptional regulator YP_001892811.1 KEGG: pfo:Pfl_0678 hypothetical protein YP_001892812.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: rso:RS02375 probable lipoprotein transmembrane YP_001892813.1 PFAM: DoxX family protein; KEGG: rso:RS02374 probable transmembrane protein YP_001892814.1 KEGG: rso:RS02373 hypothetical protein YP_001892815.1 PFAM: protein of unknown function DUF692; KEGG: rso:RS02372 hypothetical protein YP_001892816.1 KEGG: rso:RS02371 probable signal peptide protein YP_001892817.1 KEGG: bmu:Bmul_1707 hypothetical protein YP_001892818.1 KEGG: rso:RS02370 hypothetical protein YP_001892819.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mlo:mlr3911 hypothetical protein YP_001892820.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: mlo:mll3910 transcriptional regulator YP_001892821.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: mlo:mll7935 transcriptional regulator YP_001892822.1 KEGG: rso:RSp0274 probable gamma-glutamyltranspeptidase signal peptide protein; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_001892823.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_B2773 4-hydroxyphenylpyruvate dioxygenase (Hpd) YP_001892824.1 PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_5897 major facilitator superfamily MFS_1 YP_001892825.1 PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: dac:Daci_4437 shikimate dehydrogenase substrate binding domain protein YP_001892826.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: dac:Daci_4438 major facilitator superfamily MFS_1 YP_001892827.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: reu:Reut_B5034 regulatory protein, IclR YP_001892828.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: reu:Reut_B5035 4-hydroxyphenylpyruvate dioxygenase YP_001892829.1 PFAM: porin Gram-negative type; KEGG: reu:Reut_B5031 porin, gram-negative type YP_001892830.1 catalyzes the oxidative deamination of D-amino acids YP_001892831.1 catalyzes the formation of acetaldehyde from ethanolamine YP_001892832.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: reh:H16_B0096 ethanolamine ammonia-lyase heavy chain YP_001892833.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: bxe:Bxe_B0092 chromate transporter YP_001892834.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA YP_001892835.1 KEGG: bam:Bamb_5099 hypothetical protein YP_001892836.1 PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: eba:ebA5073 poly-beta-hydroxyalkanoate synthase YP_001892837.1 KEGG: eba:ebA5072 hypothetical protein YP_001892838.1 PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: har:HEAR1516 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase YP_001892839.1 KEGG: pla:Plav_3453 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase YP_001892840.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bur:Bcep18194_C6772 succinic semialdehyde dehydrogenase YP_001892841.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: bur:Bcep18194_C6773 iron-containing alcohol dehydrogenase YP_001892842.1 KEGG: bur:Bcep18194_C6774 flavin-containing monooxygenase FMO YP_001892843.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bur:Bcep18194_C6775 esterase/lipase/thioesterase YP_001892844.1 PFAM: Endoribonuclease L-PSP; KEGG: bch:Bcen2424_5817 endoribonuclease L-PSP YP_001892845.1 PFAM: protein of unknown function DUF1329; KEGG: reu:Reut_C6388 protein of unknown function DUF1329 YP_001892846.1 PFAM: protein of unknown function DUF1302; KEGG: reu:Reut_C6389 protein of unknown function DUF1302 YP_001892847.1 KEGG: reu:Reut_C6390 transporter YP_001892848.1 KEGG: reu:Reut_C6391 glycosyl hydrolase, BNR repeat YP_001892849.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: reu:Reut_B5715 phytanoyl-CoA dioxygenase YP_001892850.1 PFAM: regulatory protein TetR; KEGG: reu:Reut_C6386 regulatory protein, TetR YP_001892851.1 PFAM: FAD dependent oxidoreductase; KEGG: reu:Reut_C6399 twin-arginine translocation pathway signal YP_001892852.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: bur:Bcep18194_C6790 phytanoyl-CoA dioxygenase YP_001892853.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: reh:H16_A0831 monoamine oxidase (flavin containing) YP_001892854.1 KEGG: bch:Bcen2424_5824 cytochrome c, class I YP_001892855.1 PFAM: transposase Tn3 family protein; KEGG: bvi:Bcep1808_7171 transposase Tn3 family protein YP_001892856.1 KEGG: bvi:Bcep1808_7205 TnpC YP_001892857.1 PFAM: integrase family protein; KEGG: bmu:Bmul_5789 integrase family protein YP_001892858.1 KEGG: kpn:KPN_pKPN3p05907 hypothetical protein YP_001892859.1 PFAM: plasmid stabilization system; KEGG: sfl:CP0218 hypothetical protein YP_001892860.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: smd:Smed_6450 CopG family transcriptional regulator YP_001892861.1 KEGG: gvi:gll4023 unknown protein YP_001892862.1 KEGG: reu:Reut_A1626 hypothetical protein YP_001892863.1 KEGG: rme:Rmet_4495 hypothetical protein YP_001892864.1 KEGG: rme:Rmet_4494 hypothetical protein YP_001892869.1 KEGG: dme:Dmel_CG31439 CG31439 YP_001892870.1 KEGG: xcb:XC_2118 minor coat protein YP_001892871.1 PFAM: Zonular occludens toxin; KEGG: xcb:XC_2117 pI protein YP_001892872.1 KEGG: rme:Rmet_4488 hypothetical protein YP_001892874.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: bbt:BBta_4913 membrane protein of unknown function YP_001892875.1 PFAM: regulatory protein MerR; KEGG: bvi:Bcep1808_5897 MerR family transcriptional regulator YP_001892876.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bmu:Bmul_5842 short-chain dehydrogenase/reductase SDR YP_001892877.1 KEGG: bmu:Bmul_5841 hypothetical protein YP_001892878.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rso:RSc1996 transmembrane succinate dehydrogenase (cytochrome b-556 subunit) oxidoreductase protein YP_001892879.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rso:RSc1995 transmembrane succinate dehydrogenase (hydrophobic membrane anchor subunit) oxidoreductase protein YP_001892880.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_001892881.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_001892882.1 KEGG: bur:Bcep18194_C6587 hypothetical protein YP_001892883.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bur:Bcep18194_C6588 sigma-24 (FecI-like) YP_001892884.1 PFAM: beta-Ig-H3/fasciclin; KEGG: aav:Aave_3256 beta-Ig-H3/fasciclin YP_001892885.1 KEGG: pna:Pnap_3162 globin YP_001892887.1 KEGG: reh:H16_A1984 hypothetical protein YP_001892889.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bte:BTH_II0064 efflux transporter, RND family, MFP subunit subfamily YP_001892890.1 PFAM: protein of unknown function DUF214; KEGG: bte:BTH_II0063 permease, domain protein YP_001892891.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: bte:BTH_II0062 ABC transporter, ATP-binding protein YP_001892892.1 KEGG: rso:RS00827 hypothetical protein YP_001892893.1 KEGG: rso:RSc0198 probable transmembrane protein YP_001892894.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; Hemerythrin HHE cation binding domain protein; KEGG: reu:Reut_A1234 ATPase, E1-E2 type:heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:heavy metal translocating P-type ATPase YP_001892895.1 PFAM: cytochrome B561; KEGG: rso:RSc0199 probable cytochrome b561 cytochrome transmembrane protein YP_001892896.1 KEGG: reu:Reut_B5656 hypothetical protein YP_001892897.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: reu:Reut_B5655 heavy metal efflux pump CzcA YP_001892898.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: reu:Reut_B5654 secretion protein HlyD YP_001892899.1 KEGG: rme:Rmet_5683 hypothetical protein YP_001892900.1 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine YP_001892901.1 KEGG: rso:RSc0203 hypothetical protein YP_001892902.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate YP_001892903.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: rso:RSc0201 hypothetical protein YP_001892904.1 PFAM: heat shock protein Hsp20; KEGG: rso:RSc0200 small heat shock protein YP_001892905.1 KEGG: bmu:Bmul_5872 hypothetical protein YP_001892906.1 KEGG: bch:Bcen2424_6850 hypothetical protein YP_001892907.1 KEGG: reu:Reut_C6194 peptidase M41, FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase YP_001892908.1 PFAM: Erythromycin esterase; KEGG: reu:Reut_B5196 erythromycin esterase YP_001892909.1 KEGG: reu:Reut_B5193 hypothetical protein YP_001892910.1 KEGG: bvi:Bcep1808_6309 PfkB domain protein; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein YP_001892911.1 KEGG: bpd:BURPS668_A1549 hypothetical protein YP_001892912.1 KEGG: reu:Reut_A1162 phosphoenolpyruvate synthase; TIGRFAM: phosphoenolpyruvate synthase; PFAM: PEP-utilizing protein; pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region YP_001892913.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sen:SACE_2432 formate dehydrogenase, alpha subunit YP_001892914.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: swi:Swit_1474 NADH dehydrogenase (quinone) YP_001892915.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: bpm:BURPS1710b_1485 two-component hybrid sensor and regulator YP_001892916.1 PFAM: heat shock protein Hsp20; KEGG: bte:BTH_II0924 heat shock protein, family YP_001892917.1 KEGG: bte:BTH_I2124 sigma 54 modulation protein YP_001892919.1 KEGG: bte:BTH_II1308 hypothetical protein YP_001892921.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: reh:H16_A1997 chaperonin GroEL (HSP60 family) YP_001892924.1 class I; catalyzes the formation of deoxyribonucleotides from their corresponding ribonucleotides YP_001892925.1 KEGG: rso:RSc0193 hypothetical protein YP_001892926.1 KEGG: reu:Reut_B4032 conserved hypothetical signal peptide protein YP_001892927.1 PFAM: beta-lactamase; conserved hypothetical protein; KEGG: bte:BTH_II0925 beta-lactamase YP_001892928.1 PFAM: protein of unknown function DUF187; KEGG: bvi:Bcep1808_6307 hypothetical protein YP_001892929.1 PFAM: polysaccharide deacetylase; KEGG: bmu:Bmul_5874 polysaccharide deacetylase YP_001892930.1 PFAM: Rhomboid family protein; KEGG: rso:RS02331 probable transmembrane protein YP_001892931.1 PFAM: PHP domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding class 1; KEGG: mca:MCA1213 hypothetical protein YP_001892932.1 KEGG: bpl:BURPS1106A_2358 ribosomal subunit interface protein YP_001892933.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reu:Reut_B3865 acetoacetyl-CoA reductase YP_001892934.1 KEGG: reu:Reut_A1232 hypothetical protein YP_001892935.1 KEGG: bpd:BURPS668_A3218 hypothetical protein YP_001892936.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rso:RSc0194 probable zinc-dependent alcohol dehydrogenase oxidoreductase protein YP_001892937.1 KEGG: rme:Rmet_5125 hypothetical protein YP_001892938.1 KEGG: rso:RSc0193 hypothetical protein YP_001892939.1 PFAM: CBS domain containing protein; KEGG: reh:H16_A2015 signal-transduction protein YP_001892940.1 KEGG: reu:Reut_A1157 hypothetical protein YP_001892941.1 PFAM: phosphoribosyltransferase; KEGG: reh:H16_A1999 phosphoribosyl transferase YP_001892942.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; ATPase P; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bxe:Bxe_B2642 ATPase P YP_001892943.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: reu:Reut_A1225 RND efflux system, outer membrane lipoprotein, NodT YP_001892944.1 PFAM: secretion protein HlyD family protein; KEGG: reu:Reut_A1224 secretion protein HlyD YP_001892945.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: reu:Reut_A1223 ABC transporter YP_001892946.1 PFAM: protein of unknown function DUF214; KEGG: reu:Reut_A1222 protein of unknown function DUF214 YP_001892947.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rso:RSc0192 probable response regulator transcription regulator protein YP_001892948.1 KEGG: rso:RSc0191 probable transmembrane two component system sensor kinase transcription regulator protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001892949.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: rso:RSc0190 probable transcription regulator protein YP_001892950.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: rso:RSc0189 hypothetical protein YP_001892951.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: rso:RSc1511 hypothetical protein YP_001892952.1 KEGG: rso:RSc0187 hypothetical protein YP_001892953.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: rso:RSc0186 hypothetical protein YP_001892954.1 PFAM: UspA domain protein; KEGG: rso:RSc0185 hypothetical protein YP_001892955.1 PFAM: UspA domain protein; KEGG: rso:RSc0184 hypothetical protein YP_001892956.1 PFAM: CBS domain containing protein; KEGG: rso:RSc0183 hypothetical protein YP_001892957.1 KEGG: rso:RSc0182 probable transmembrane protein YP_001892958.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rso:RSc1505 probable alcohol dehydrogenase-like oxidoreductase protein YP_001892959.1 PFAM: UspA domain protein; KEGG: rso:RSc0179 hypothetical protein YP_001892960.1 KEGG: rme:Rmet_1742 hypothetical protein YP_001892961.1 KEGG: rso:RSp0994 probable excinuclease ABC subunit A (DNA repair ATP-binding) ABC transporter protein; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter; SMART: AAA ATPase YP_001892962.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: rso:RSp0383 probable flagellar HOOK-associated protein 2 (filament CAP protein) YP_001892963.1 KEGG: bvi:Bcep1808_5441 hypothetical protein YP_001892964.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: rso:RS01655 probable transmembrane protein YP_001892965.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSp0834 probable hexuronate transporter transmembrane protein YP_001892966.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rso:RS05363 hypothetical protein YP_001892967.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: rso:RS05364 hypothetical protein YP_001892968.1 KEGG: rso:RSp0830 probable D-galactarate dehydratase (D-galactarate dehydrogenase) protein; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein YP_001892969.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rso:RSp0829 probable glucarate dehydratase protein YP_001892970.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSp0828 glucarate transporter (D-glucarate permease) transmembrane protein YP_001892971.1 PFAM: Aldehyde Dehydrogenase_; KEGG: rso:RS05368 probable ketoglutarate semialdehyde dehydrogenase protein YP_001892972.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate YP_001892973.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RS05372 probable transcription regulator protein YP_001892974.1 KEGG: reh:H16_B2353 hypothetical protein YP_001892975.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: reh:H16_B0887 ABC-type transporter, periplasmic component: TauT family YP_001892976.1 PFAM: cytochrome c class I; KEGG: reh:H16_B1869 cytochrome c, mono-and diheme variants YP_001892977.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: reh:H16_B1868 ABC-type sulfonate transporter, ATPase component YP_001892978.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_2220 binding-protein-dependent transport systems inner membrane component YP_001892979.1 PFAM: NMT1/THI5 like domain protein; KEGG: rme:Rmet_2219 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components YP_001892980.1 PFAM: class II aldolase/adducin family protein; KEGG: bmu:Bmul_4335 class II aldolase/adducin family protein YP_001892981.1 PFAM: Luciferase-like monooxygenase; KEGG: reu:Reut_B5047 alkanesulfonate monooxygenase YP_001892982.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rme:Rmet_2217 acyl-CoA dehydrogenase YP_001892983.1 KEGG: reu:Reut_B5045 cysteine dioxygenase type I YP_001892984.1 PFAM: Rhodanese domain protein; KEGG: reh:H16_B1862 rhodanese-related sulfurtransferase YP_001892985.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RS01886 probable transmembrane protein YP_001892986.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rso:RS01894 hypothetical protein YP_001892987.1 KEGG: rso:RS01895 transmembrane protein YP_001892988.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RS01896 probable TonB-dependent receptor signal peptide protein YP_001892989.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_001892990.1 TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_4191 LysR family transcriptional regulator YP_001892991.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: reh:H16_B1164 phosphoserine phosphatase YP_001892992.1 TIGRFAM: FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_5887 hypothetical protein YP_001892993.1 TIGRFAM: 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component; PFAM: extracellular solute-binding protein family 1; KEGG: reu:Reut_B5525 extracellular solute-binding protein, family 1 YP_001892994.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate YP_001892995.1 TIGRFAM: 2-aminoethylphosphonate ABC transport system, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B0110 ABC-type transporter, duplicated permease domains YP_001892996.1 KEGG: reh:H16_B0109 ABC-type transporter, ATPase component; TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding protein component; PFAM: ABC transporter; SMART: AAA ATPase YP_001892997.1 TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_B5518 regulatory protein, LysR:LysR, substrate-binding YP_001892998.1 KEGG: rso:RS01899 probable hemagglutinin-related transmembrane protein YP_001892999.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_001893000.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rso:RS01900 probable ferredoxin protein YP_001893001.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001893002.1 PFAM: protein of unknown function DUF962; KEGG: rso:RS01901 probable transmembrane protein YP_001893003.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: rso:RS01902 transcription regulator protein YP_001893004.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001893005.1 PFAM: Citrate transporter; KEGG: rso:RS01905 probable transmembrane protein YP_001893006.1 PFAM: helix-turn-helix domain protein; KEGG: rso:RS01906 probable glycine rich protein YP_001893007.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase. YP_001893008.1 KEGG: rso:RS01908 hypothetical protein YP_001893009.1 KEGG: rso:RS01909 hypothetical protein YP_001893010.1 KEGG: rso:RSc0705 probable transmembrane protein YP_001893011.1 PFAM: fatty acid hydroxylase; KEGG: rso:RS01698 probable transmembrane protein YP_001893012.1 PFAM: protein of unknown function DUF985; KEGG: rso:RS01699 hypothetical protein YP_001893013.1 KEGG: rso:RS01700 hypothetical protein YP_001893014.1 KEGG: bch:Bcen2424_1880 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding YP_001893015.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reu:Reut_B3580 general substrate transporter:protein of unknown function DUF1228:major facilitator superfamily MFS_1 YP_001893016.1 PFAM: porin Gram-negative type; KEGG: dac:Daci_4894 porin gram-negative type YP_001893017.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: reu:Reut_B3579 ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region YP_001893018.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reh:H16_B0738 predicted ring-cleavage extradiol dioxygenase YP_001893019.1 PFAM: Aldehyde Dehydrogenase_; KEGG: reh:H16_B0737 aldehyde dehydrogenase, NAD-dependent YP_001893020.1 catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis YP_001893021.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: reh:H16_B0735 acetolactate synthase large subunit YP_001893022.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reu:Reut_B3574 short chain dehydrogenase YP_001893023.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: reu:Reut_B3598 regulatory protein, IclR YP_001893024.1 PFAM: alpha/beta hydrolase fold; KEGG: reu:Reut_B3568 alpha/beta hydrolase fold YP_001893025.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: reh:H16_B0732 hypothetical protein YP_001893026.1 member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria YP_001893027.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: reu:Reut_B3570 Rieske (2Fe-2S) region YP_001893028.1 KEGG: reh:H16_B0729 hypothetical protein YP_001893029.1 PFAM: regulatory protein TetR; KEGG: reh:H16_B1099 transcriptional regulator, TetR/AcrR-family YP_001893030.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bja:bll0256 transcriptional regulatory protein YP_001893031.1 PFAM: protein of unknown function DUF1348; KEGG: pfl:PFL_3262 hypothetical protein YP_001893032.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bpt:Bpet3229 probable acetyltransferase YP_001893033.1 KEGG: cvi:CV_0580 hypothetical protein YP_001893034.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cvi:CV_0581 LysR family transcriptional regulator YP_001893035.1 PFAM: alpha/beta hydrolase fold; KEGG: rme:Rmet_1384 alpha/beta hydrolase fold YP_001893036.1 KEGG: rso:RS01733 hypothetical protein YP_001893037.1 KEGG: rso:RS01734 transmembrane protein YP_001893038.1 PFAM: aminotransferase class IV; KEGG: rso:RS01735 D-alanine aminotransferase (D-aspartate aminotransferase) protein YP_001893039.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RS01736 hypothetical protein YP_001893040.1 KEGG: rso:RS01741 probable signal peptide protein YP_001893041.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RS01742 probable amino-acid composite ATP-binding transmembrane ABC transporter protein YP_001893042.1 PFAM: inner-membrane translocator; ABC transporter; SMART: AAA ATPase; KEGG: rso:RS01743 probable amino-acid composite ATP-binding transmembrane ABC transporter protein YP_001893043.1 PFAM: inner-membrane translocator; KEGG: rso:RS01744 probable amino-acid transmembrane ABC transporter protein YP_001893044.1 PFAM: regulatory protein IclR; KEGG: rso:RS01745 probable transcription regulator protein YP_001893045.1 PFAM: beta-lactamase domain protein; KEGG: rso:RS01746 hypothetical protein YP_001893046.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rso:RS01747 hypothetical protein YP_001893047.1 KEGG: rso:RS01748 hypothetical protein YP_001893048.1 PFAM: aldo/keto reductase; KEGG: bxe:Bxe_B1154 oxidoreductase YP_001893049.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RS01757 probable transcription regulator transcription regulator protein YP_001893051.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine YP_001893052.1 KEGG: rso:RS01759 probable fumarylacetoacetase (fumarylacetoacetate hydrolase) protein; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969 YP_001893053.1 PFAM: Negative transcriptional regulator; KEGG: rso:RS01760 hypothetical protein YP_001893054.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: bmu:Bmul_5922 ABC transporter YP_001893055.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bmu:Bmul_5923 binding-protein-dependent transport systems inner membrane component YP_001893056.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RS01762 acyl-CoA dehydrogenase oxidoreductase protein YP_001893057.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_B5494 regulatory protein, LysR:LysR, substrate-binding YP_001893058.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSp0677 transcriptional activator MetR transcription regulator protein YP_001893059.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_001893060.1 PFAM: acriflavin resistance protein; KEGG: rso:RS01779 probable transporter lipoprotein transmembrane YP_001893061.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RS01779 probable transporter lipoprotein transmembrane YP_001893062.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS01780 probable outer membrane channel lipoprotein YP_001893063.1 KEGG: pmy:Pmen_0312 hypothetical protein YP_001893064.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: rso:RS01781 hypothetical protein YP_001893065.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS01782 CynX-related transport transmembrane protein YP_001893066.1 KEGG: rso:RSp0666 probable DNA-3-methyladenine glycosylase I protein; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_001893067.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: rso:RS01784 probable magnesium and cobalt transport transmembrane protein YP_001893068.1 PFAM: regulatory protein MarR; KEGG: rso:RS01785 probable transcription regulator protein YP_001893069.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS01786 probable transport transmembrane protein YP_001893070.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_001893071.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bam:Bamb_6274 antibiotic biosynthesis monooxygenase YP_001893072.1 KEGG: reh:H16_B0303 permease of drug/metabolite transporter YP_001893073.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bmu:Bmul_5852 LysR family transcriptional regulator YP_001893074.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_001893075.1 KEGG: aav:Aave_4033 hypothetical protein YP_001893076.1 PFAM: acyltransferase 3; KEGG: rso:RS03732 acyltransferase transmembrane protein YP_001893077.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rme:Rmet_3846 methyltransferase type 11 YP_001893078.1 PFAM: regulatory protein TetR; KEGG: rso:RS03754 probable transcription regulator protein YP_001893079.1 TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rso:RSp0608 probable ferredoxin reductase protein YP_001893080.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: rso:RSp0607 probable phenylacetic acid degradation protein YP_001893081.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: rso:RSp0606 probable phenylacetic acid degradation protein YP_001893082.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation YP_001893083.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA YP_001893084.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bbr:BB2411 transmembrane efflux protein YP_001893085.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: rso:RSp0601 hypothetical protein YP_001893086.1 KEGG: rso:RS03879 hypothetical protein YP_001893087.1 PFAM: regulatory protein TetR; KEGG: rso:RS03880 transcription regulator protein YP_001893088.1 KEGG: reu:Reut_B4200 probable transmembrane protein YP_001893089.1 PFAM: response regulator receiver; CheW domain protein; KEGG: rso:RS03881 response regulator transcription regulator protein YP_001893090.1 KEGG: bmu:Bmul_4742 hypothetical protein YP_001893091.1 SMART: AAA ATPase; KEGG: bmu:Bmul_4741 AAA ATPase YP_001893092.1 PFAM: Integrase catalytic region; TnsA endonuclease; KEGG: bmu:Bmul_4740 integrase catalytic region YP_001893093.1 KEGG: bmu:Bmul_4739 hypothetical protein YP_001893094.1 KEGG: rme:Rmet_5460 hypothetical protein YP_001893095.1 KEGG: rme:Rmet_5461 hypothetical protein YP_001893096.1 KEGG: bvi:Bcep1808_0165 hypothetical protein YP_001893098.1 KEGG: bps:BPSL0566 hypothetical protein YP_001893101.1 PFAM: 17 kDa surface antigen; KEGG: rso:RSc1027 probable transmembrane protein YP_001893102.1 KEGG: bam:Bamb_3903 hypothetical protein YP_001893103.1 KEGG: mpt:Mpe_A1934 hypothetical protein YP_001893105.1 KEGG: rme:Rmet_5463 hypothetical protein YP_001893106.1 PFAM: protein of unknown function DUF347; KEGG: rme:Rmet_4979 protein of unknown function DUF347 YP_001893107.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3934 major facilitator superfamily MFS_1 YP_001893108.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rfr:Rfer_3389 alkylhydroperoxidase YP_001893109.1 KEGG: slo:Shew_3761 hypothetical protein YP_001893110.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: shl:Shal_3552 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001893111.1 KEGG: nar:Saro_3962 hypothetical protein YP_001893112.1 KEGG: eba:ebA6447 hypothetical protein YP_001893113.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: bbt:BBta_3390 cytochrome c-type biogenesis protein YP_001893114.1 PFAM: Thioredoxin domain; KEGG: bbt:BBta_3389 thioredoxin (H-type,TRX-H) YP_001893116.1 KEGG: rfr:Rfer_1599 hypothetical protein YP_001893117.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: net:Neut_0707 LysR family transcriptional regulator protein YP_001893119.1 PFAM: copper resistance protein CopC; KEGG: bte:BTH_II1957 copper resistance protein YP_001893120.1 PFAM: copper resistance D domain protein; KEGG: bpl:BURPS1106A_A0625 copper resistance protein D YP_001893121.1 KEGG: bvi:Bcep1808_3972 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein YP_001893122.1 Involved in disulfide bond formation YP_001893123.1 PFAM: regulatory protein TetR; KEGG: pfo:Pfl_2955 TetR family transcriptional regulator YP_001893124.1 PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: bxe:Bxe_A4283 diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains) YP_001893125.1 PFAM: phosphoesterase; KEGG: bmu:Bmul_6095 phosphoesterase YP_001893126.1 PFAM: phosphoesterase; KEGG: nca:Noca_3200 phosphoesterase YP_001893127.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: bxe:Bxe_B0092 chromate transporter YP_001893128.1 TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: reu:Reut_B5693 4-oxalocrotonate tautomerase YP_001893129.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate YP_001893130.1 catalyzes the formation of acetyl-CoA from acetalaldehyde YP_001893131.1 KEGG: reu:Reut_B5692 4-oxalocrotonate decarboxylase; TIGRFAM: 4-oxalocrotonate decarboxylase; PFAM: Hydratase/decarboxylase YP_001893132.1 KEGG: reu:Reut_B5691 4-oxalocrotonate decarboxylase; TIGRFAM: 2-oxopent-4-enoate hydratase; PFAM: Hydratase/decarboxylase YP_001893133.1 PFAM: alpha/beta hydrolase fold; KEGG: reu:Reut_B5690 alpha/beta hydrolase fold YP_001893134.1 TIGRFAM: 2-hydroxymuconic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: reu:Reut_B5689 betaine-aldehyde dehydrogenase YP_001893135.1 PFAM: protein of unknown function DUF336; KEGG: reu:Reut_B5688 protein of unknown function DUF336 YP_001893136.1 TIGRFAM: catechol 2,3 dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B5687 catechol 2,3-dioxygenase YP_001893137.1 PFAM: ferredoxin; KEGG: reu:Reut_B5686 ferredoxin YP_001893138.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: reu:Reut_B5685 ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region YP_001893139.1 PFAM: phenol hydroxylase conserved region; KEGG: reu:Reut_B5684 phenol hydroxylase conserved region YP_001893140.1 PFAM: methane/phenol/toluene hydroxylase; YHS domain protein; KEGG: reu:Reut_B5683 methane/phenol/toluene hydroxylase:YHS YP_001893141.1 PFAM: monooxygenase component MmoB/DmpM; KEGG: reu:Reut_B5682 monooxygenase component MmoB/DmpM YP_001893142.1 PFAM: methane/phenol/toluene hydroxylase; KEGG: reu:Reut_B5681 methane/phenol/toluene hydroxylase YP_001893143.1 PFAM: phenol hydroxylase subunit; KEGG: reu:Reut_B5680 phenol hydroxylase subunit YP_001893144.1 PFAM: methane/phenol/toluene hydroxylase; YHS domain protein; KEGG: reu:Reut_B5679 methane/phenol/toluene hydroxylase:YHS YP_001893145.1 PFAM: Toluene-4-monooxygenase system B; KEGG: reu:Reut_B5678 toluene-4-monooxygenase system B YP_001893146.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: reu:Reut_B5677 Rieske (2Fe-2S) region YP_001893147.1 PFAM: monooxygenase component MmoB/DmpM; KEGG: reu:Reut_B5676 monooxygenase component MmoB/DmpM YP_001893148.1 PFAM: methane/phenol/toluene hydroxylase; KEGG: reu:Reut_B5675 methane/phenol/toluene hydroxylase YP_001893149.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: reu:Reut_B5674 ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region YP_001893150.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4-vinyl reductase 4VR; Activator of aromatic catabolism; SMART: AAA ATPase; KEGG: reu:Reut_B5673 helix-turn-helix, fis-type YP_001893151.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: reu:Reut_B5672 membrane protein involved in aromatic hydrocarbon degradation YP_001893152.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4-vinyl reductase 4VR; Activator of aromatic catabolism; SMART: AAA ATPase; KEGG: reu:Reut_B5671 helix-turn-helix, fis-type YP_001893153.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reu:Reut_B5670 regulatory protein GntR, HTH:GntR, C-terminal YP_001893154.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sen:SACE_2432 formate dehydrogenase, alpha subunit YP_001893155.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: swi:Swit_1474 NADH dehydrogenase (quinone) YP_001893156.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_001893157.1 KEGG: bte:BTH_II0928 probable pyruvate dehydrogenase, E1 component, alpha subunit; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component YP_001893158.1 PFAM: transketolase; Transketolase domain protein; KEGG: bte:BTH_II0929 pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase beta subunit YP_001893159.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: bte:BTH_II0930 probable pyruvate dehydrogenase, E2 component, dihydrolipoamide acetyltransferase YP_001893160.1 KEGG: bte:BTH_II0931 hypothetical protein YP_001893161.1 KEGG: bpm:BURPS1710b_2475 RedA YP_001893162.1 KEGG: reu:Reut_A1215 PAS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001893163.1 KEGG: bte:BTH_I2124 sigma 54 modulation protein YP_001893165.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: reh:H16_A1997 chaperonin GroEL (HSP60 family) YP_001893166.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_001893167.1 Involved in anaerobic NO protection and iron metabolism YP_001893168.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon YP_001893169.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001893170.1 KEGG: rso:RS02295 hypothetical protein YP_001893171.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: rso:RSp0965 ribonucleotide reductase activating transmembrane protein YP_001893172.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: rso:RS02297 probable transcription regulator protein YP_001893173.1 PFAM: DGC domain protein; KEGG: rso:RS02298 lipoprotein YP_001893174.1 KEGG: rso:RS02299 hypothetical protein YP_001893175.1 PFAM: peptidase U32; KEGG: rso:RS02300 hypothetical protein YP_001893176.1 PFAM: peptidase U32; KEGG: rso:RS02301 probable protease protein YP_001893177.1 KEGG: rso:RS02303 probable transmembrane protein YP_001893178.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSp0972 nitrite/nitrate transporter transmembrane protein YP_001893179.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSp0973 probable nitrite/nitrate transporter transmembrane protein YP_001893180.1 PFAM: protein of unknown function DUF161; KEGG: eca:ECA3669 hypothetical protein YP_001893181.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rso:RSp0974 probable respiratory nitrate reductase alpha chain oxidoreductase protein YP_001893182.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: rso:RSp0975 probable respiratory nitrate reductase oxidoreductase protein YP_001893183.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: rso:RSp0976 respiratory nitrate reductase oxidoreductase protein YP_001893184.1 KEGG: rso:RSp0977 probable respiratory nitrate reductase transmembrane protein; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit YP_001893185.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: rso:RSp0978 probable molybdopterin-guanine dinucleotide biosynthesis protein YP_001893186.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rso:RSp0979 transmembrane nitrate/nitrite sensor kinase transcription regulator protein YP_001893187.1 PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: rso:RSp0980 probable nitrate/nitrite response regulator transcription regulator protein YP_001893188.1 PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: rso:RSc3159 hypothetical protein YP_001893189.1 PFAM: HI0933 family protein; KEGG: rso:RSc3158 transmembrane protein YP_001893190.1 KEGG: rso:RSc3157 hypothetical protein YP_001893191.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bxe:Bxe_B1745 diguanylate cyclase (GGDEF domain) YP_001893192.1 PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: rso:RS00411 aminopeptidase transmembrane protein YP_001893193.1 PFAM: nitrogen regulatory protein P-II; KEGG: rso:RS00410 probable P-II-related protein transcription regulator YP_001893194.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rso:RS00409 cation efflux system transmembrane protein YP_001893195.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RS00408 cation efflux protein YP_001893196.1 PFAM: outer membrane efflux protein; KEGG: rso:RS00407 outer membrane cation efflux system protein YP_001893197.1 KEGG: rso:RS00406 probable transmembrane protein YP_001893198.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rso:RS00403 probable transmembrane sensor histidine kinase transcription regulator protein YP_001893199.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RS00402 two component response regulator transcription regulator protein YP_001893200.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rso:RS00398 hypothetical protein YP_001893201.1 PFAM: MscS Mechanosensitive ion channel; KEGG: rso:RS00392 probable transmembrane protein YP_001893202.1 KEGG: rso:RS05802 transmembrane protein YP_001893203.1 KEGG: rso:RS00391 hypothetical protein YP_001893204.1 KEGG: rso:RS00390 hypothetical signal peptide protein YP_001893205.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: rso:RSp0510 probable UDP-N-acetylglucosamine 2-epimerase protein YP_001893206.1 KEGG: rso:RS00388 hypothetical signal peptide protein YP_001893207.1 PFAM: General secretory system II protein E domain protein; KEGG: rso:RSp0508 bacteriophage N4 adsorption protein B YP_001893208.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rso:RSp0507 probable methyl-accepting chemotaxis I MCP-I serine chemoreceptor protein transmembrane YP_001893209.1 PFAM: 17 kDa surface antigen; KEGG: rso:RS00385 glycin-rich transmembrane protein YP_001893210.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rso:RSp0505 2-hydroxyacid dehydrogenase YP_001893211.1 PFAM: Extracellular ligand-binding receptor; KEGG: rso:RSc1750 probable Leu/Ile/Val-binding precursor signal peptide protein YP_001893212.1 PFAM: regulatory protein TetR; KEGG: dar:Daro_3251 regulatory protein, TetR YP_001893213.1 PFAM: histidine triad (HIT) protein; KEGG: rso:RSp0494 HIT-like protein YP_001893214.1 KEGG: reh:H16_A0279 hypothetical protein YP_001893215.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rso:RS00365 hypothetical protein YP_001893216.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: reh:H16_A0278 transcriptional regulator, MocR family YP_001893217.1 KEGG: rso:RS00364 hypothetical protein YP_001893218.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:bll7955 enoyl-CoA hydratase/isomerase YP_001893219.1 PFAM: regulatory protein MarR; KEGG: reu:Reut_B4527 regulatory protein, MarR YP_001893220.1 KEGG: bam:Bamb_3867 alpha/beta hydrolase-like protein YP_001893221.1 PFAM: regulatory protein ArsR; KEGG: rso:RSc1960 transcriptional regulatory DNA-binding transcription regulator protein YP_001893222.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rso:RSc1959 hypothetical protein YP_001893223.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001893224.1 PFAM: phosphoglycerate mutase; KEGG: bur:Bcep18194_B3039 phosphoglycerate/bisphosphoglycerate mutase YP_001893225.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_C6406 short chain dehydrogenase YP_001893226.1 PFAM: beta-lactamase domain protein; KEGG: reh:H16_A0853 lactamase B YP_001893227.1 KEGG: rso:RS00884 hypothetical protein YP_001893228.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSp0412 fosmidomycin resistance antibiotic resistance transmembrane protein YP_001893229.1 KEGG: rso:RS05307 hypothetical protein YP_001893230.1 KEGG: rso:RS00868 probable transmembrane protein YP_001893231.1 PFAM: protein of unknown function DUF1345; KEGG: rso:RS00867 probable transmembrane protein YP_001893232.1 KEGG: rso:RS00866 hypothetical protein YP_001893233.1 KEGG: rso:RS00831 hypothetical signal peptide protein YP_001893234.1 KEGG: rso:RS00829 probable lipoprotein YP_001893235.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSp0397 probable phosphinothricin acetyltransferase protein YP_001893236.1 SMART: Rhodanese domain protein; KEGG: rso:RS00824 probable transmembrane protein YP_001893237.1 PFAM: flagellar hook-length control protein; KEGG: rso:RSp0395 probable flagellar HOOK-length control protein YP_001893238.1 TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: rso:RSp0394 probable flagellar protein YP_001893239.1 KEGG: rso:RSp0393 probable flagellum-specific ATP synthase protein; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase YP_001893240.1 binds to and inhibits the function of flagella specific ATPase FliI YP_001893241.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001893242.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: rso:RSp0390 probable flagellar M-ring transmembrane protein YP_001893243.1 forms a junction between the M-ring and FlgB during flagella biosynthesis YP_001893244.1 PFAM: glycosyl transferase family 2; KEGG: rso:RS00815 hypothetical protein YP_001893245.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pfo:Pfl_1510 nucleotidyl transferase YP_001893246.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: acr:Acry_0592 CDP-glucose 4,6-dehydratase YP_001893247.1 KEGG: dol:Dole_1961 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_001893248.1 PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rle:RL0240 perosamine synthetase YP_001893249.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: azc:AZC_3474 phytanoil-CoA alpha hydroxylase YP_001893250.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: azc:AZC_3475 hypothetical protein YP_001893251.1 PFAM: GCN5-related N-acetyltransferase; KEGG: azc:AZC_3472 acetyltransferase YP_001893252.1 PFAM: WbqC-like family protein; KEGG: azc:AZC_3473 hypothetical protein YP_001893253.1 PFAM: glycosyl transferase family 2; KEGG: azc:AZC_3476 glycosyltransferase YP_001893254.1 forms a junction between the M-ring and FlgB during flagella biosynthesis YP_001893255.1 PFAM: OsmC family protein; KEGG: rru:Rru_A0476 OsmC-like protein YP_001893256.1 PFAM: regulatory protein MarR; KEGG: rso:RS00814 transcription regulator protein YP_001893257.1 PFAM: glycosyl transferase family 2; KEGG: rso:RS00815 hypothetical protein YP_001893258.1 KEGG: rso:RSp0385 probable flagellar protein FliT YP_001893259.1 PFAM: flagellar protein FliS; KEGG: rso:RSp0384 probable flagellar protein FliS YP_001893260.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: rso:RSp0383 probable flagellar HOOK-associated protein 2 (filament CAP protein) YP_001893261.1 PFAM: flagellin domain protein; KEGG: rso:RSp0382 flagellin protein YP_001893262.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rso:RS00809 probable transcription regulator protein YP_001893263.1 KEGG: rso:RS00808 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001893264.1 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring YP_001893265.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_001893266.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rso:RSp0377 probable flagellar motor switch protein FliN YP_001893267.1 PFAM: flagellar biosynthesis protein FliO; KEGG: rso:RSp0376 probable flagellar FliO transmembrane protein YP_001893268.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_001893269.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus YP_001893270.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: rso:RSp0373 probable flagellar biosynthetic FliR transmembrane protein YP_001893271.1 KEGG: rso:RS00799 hypothetical protein YP_001893272.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: rso:RS00796 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha transmembrane protein YP_001893273.1 KEGG: bxe:Bxe_A0928 acyl-carrier protein YP_001893274.1 carries the fatty acid chain in fatty acid biosynthesis YP_001893275.1 KEGG: rso:RS00790 hypothetical protein YP_001893276.1 PFAM: AMP-dependent synthetase and ligase; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: rso:RS00787 hypothetical protein YP_001893277.1 PFAM: glycosyl transferase family 2; KEGG: rso:RS00785 hypothetical protein YP_001893278.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: rso:RSp0365 probable histidine ammonia-lyase protein YP_001893279.1 PFAM: thioesterase superfamily protein; KEGG: rso:RS00778 hypothetical protein YP_001893280.1 KEGG: rso:RS00776 hypothetical signal peptide protein YP_001893281.1 KEGG: rso:RS00775 probable lipoprotein transmembrane YP_001893282.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_001893283.1 PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: rso:RS00772 hypothetical protein YP_001893284.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001893285.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_001893286.1 PFAM: beta-ketoacyl synthase; KEGG: rso:RSp0357 probable 3-oxoacyl-[acyl-carrier-protein] synthase I YP_001893287.1 KEGG: rso:RS00762 hypothetical signal peptide protein YP_001893288.1 KEGG: bxe:Bxe_A0943 excinuclease, ATPase subunit YP_001893289.1 PFAM: methyltransferase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rso:RS00761 hypothetical protein YP_001893290.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: rso:RS00759 oxidoreductase protein YP_001893291.1 PFAM: protein of unknown function DUF1275; KEGG: rso:RS00757 probable transmembrane protein YP_001893292.1 TIGRFAM: flagellar hook-associated protein 3; KEGG: rso:RSp0352 probable flagellar HOOK-associated protein 3 YP_001893293.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_001893294.1 KEGG: rso:RSp0350 probable flagellar protein FlgJ; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2 YP_001893295.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_001893296.1 PFAM: flagellar L-ring protein; KEGG: rso:RSp0348 probable flagellar L-ring protein precursor YP_001893297.1 TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rso:RSp0347 probable flagellar basal-body rod protein FlgG (distal rod protein) YP_001893298.1 TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rso:RSp0346 probable flagellar basal-body rod protein FlgF YP_001893299.1 the hook connects flagellar basal body to the flagellar filament YP_001893300.1 PFAM: flagellar hook capping protein; KEGG: rso:RSp0344 probable basal-body rod modification protein FlgD YP_001893301.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rso:RSp0343 probable flagellar basal-body rod protein FlgC YP_001893302.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: rso:RSp0342 probable flagellar basal-body rod protein FlgB YP_001893303.1 required for the assembly of the flagellar basal body P-ring YP_001893304.1 PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: rso:RSp0340 probable negative regulator of flagellin synthesis (anti-sigma-28 factor) protein YP_001893305.1 PFAM: FlgN family protein; KEGG: rso:RSp0339 probable flagella synthesis protein FlgN YP_001893306.1 PFAM: regulatory protein LuxR; LexA DNA-binding domain protein; KEGG: rso:RSp0338 negative regulator of exopolysaccharide production transcription regulator protein YP_001893307.1 PFAM: porin Gram-negative type; KEGG: rso:RS00714 probable porin precursor transmembrane protein YP_001893308.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: rso:RS00713 probable transcription regulator protein YP_001893309.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: rso:RS00711 HNS-like transcription regulator protein YP_001893310.1 KEGG: rso:RS00710 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001893311.1 KEGG: rso:RSp0333 osmotically inducible lipoprotein B2 transmembrane YP_001893312.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates YP_001893313.1 KEGG: rso:RS05439 hypothetical protein YP_001893314.1 PFAM: OsmC family protein; KEGG: rso:RS05440 probable organic hydroperoxide resistance protein YP_001893315.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: rso:RS05441 probable dehydrogenase, large chain oxidoreductase protein YP_001893316.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rso:RS05442 probable dehydrogenase, small chain oxidoreductase protein YP_001893317.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: rso:RSp0322 2-isopropylmalate synthase YP_001893318.1 PFAM: protein of unknown function DUF326; KEGG: rso:RS05446 probable cysteine-rich protein YP_001893319.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: rso:RS05447 probable transcription regulator protein YP_001893320.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rso:RS05448 probable metal-transporting P-type ATPase transmembrane protein YP_001893321.1 PFAM: protein of unknown function DUF1234; KEGG: aav:Aave_0055 protein of unknown function DUF1234 YP_001893322.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: psb:Psyr_2672 citrate transporter YP_001893323.1 PFAM: protein of unknown function DUF1446; KEGG: bra:BRADO1397 hypothetical protein YP_001893324.1 KEGG: pol:Bpro_4170 hypothetical protein YP_001893325.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_5879 LysR family transcriptional regulator YP_001893326.1 PFAM: UspA domain protein; KEGG: rso:RS05449 hypothetical protein YP_001893327.1 PFAM: protein of unknown function DUF1486; KEGG: rso:RS05451 hypothetical protein YP_001893328.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: rso:RS05452 transmembrane protein YP_001893329.1 PFAM: transcriptional regulator PadR family protein; KEGG: rso:RS05461 hypothetical protein YP_001893330.1 KEGG: azo:azo2559 conserved hypothetical secreted protein YP_001893331.1 PFAM: beta-lactamase; KEGG: rme:Rmet_5786 beta-lactamase YP_001893332.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RS05463 probable transcription regulator protein YP_001893333.1 PFAM: dihydroorotate dehydrogenase; 2-nitropropane dioxygenase NPD; KEGG: rso:RS05464 probable oxidoreductase protein YP_001893334.1 PFAM: protein of unknown function DUF1470; KEGG: rso:RS05465 hypothetical protein YP_001893335.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RS05466 probable dehydrogenase oxidoreductase protein YP_001893336.1 PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A4072 major facilitator superfamily (MFS) transporter YP_001893337.1 PFAM: ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_A4475 AraC family transcriptional regulator YP_001893338.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RS04766 hypothetical protein YP_001893339.1 TIGRFAM: methyltransferase; KEGG: bch:Bcen2424_4684 methyltransferase YP_001893340.1 KEGG: reu:Reut_A1768 hypothetical protein YP_001893341.1 KEGG: rso:RS03755 probable transmembrane protein YP_001893342.1 PFAM: response regulator receiver; KEGG: bxe:Bxe_B3007 response regulator receiver domain protein(CheY) YP_001893343.1 KEGG: bxe:Bxe_B3009 hypothetical protein YP_001893344.1 PFAM: chemotaxis sensory transducer; KEGG: bxe:Bxe_B3010 methyl-accepting chemotaxis sensory transducer YP_001893345.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: PAC repeat-containing protein; KEGG: bxe:Bxe_B3011 CheA signal transduction histidine kinases (STHK) YP_001893346.1 PFAM: Domain of unknown function DUF1801; KEGG: rme:Rmet_1765 hypothetical protein YP_001893347.1 KEGG: bte:BTH_II1151 hypothetical protein YP_001893348.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSc3133 antibiotic resistance (acetyltransferase) protein YP_001893349.1 PFAM: NAD-glutamate dehydrogenase; KEGG: pol:Bpro_3020 NAD-glutamate dehydrogenase YP_001893350.1 KEGG: reu:Reut_B5133 hypothetical protein YP_001893351.1 KEGG: rso:RS03675 probable transmembrane protein YP_001893352.1 predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein YP_001893353.1 PFAM: polysaccharide deacetylase; KEGG: rso:RSp0287 hemin storage signal peptide protein YP_001893354.1 KEGG: rso:RSp0286 hemin-binding outer membrane transmembrane protein YP_001893355.1 PFAM: regulatory protein LuxR; KEGG: rso:RS03679 probable transcription regulator protein YP_001893356.1 KEGG: rso:RS03680 probable transmembrane protein YP_001893357.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pol:Bpro_4367 NAD-dependent epimerase/dehydratase YP_001893358.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_001893359.1 PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_4806 XRE family transcriptional regulator YP_001893360.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rso:RSp0283 probable DNA-damage-inducible F transmembrane protein YP_001893361.1 PFAM: amino acid permease-associated region; KEGG: rso:RS03682 probable amino-acid permease transmembrane protein YP_001893362.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6337 LysR family transcriptional regulator YP_001893363.1 PFAM: aldo/keto reductase; KEGG: bvi:Bcep1808_6440 aldo/keto reductase YP_001893364.1 KEGG: spe:Spro_1357 MerR family transcriptional regulator YP_001893365.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: reh:H16_B1253 predicted signal transduction protein containingan EAL and a GGDEF domain YP_001893366.1 PFAM: coagulation factor 5/8 type domain protein; WD40 domain protein beta Propeller; KEGG: rso:RS03685 probable signal peptide protein YP_001893367.1 KEGG: scl:sce1179 alkaline phosphatase YP_001893368.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate YP_001893369.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: reh:H16_B1400 transcriptional regulator CRP family YP_001893370.1 KEGG: rso:RS02107 hypothetical protein YP_001893371.1 catalyzes the interconversion of chorismate to prephenate YP_001893372.1 KEGG: rso:RS02108 probable protease signal peptide protein; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001893373.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rso:RS02109 probable transmembrane two-component sensor kinase transcription regulator protein YP_001893374.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RS02110 probable two-component response regulator transcription regulator protein YP_001893375.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: rso:RSp1556 transcription regulation repressor HexR transcription regulator protein YP_001893376.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_001893377.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: rso:RSp1558 probable 6-phosphogluconolactonase oxidoreductase protein YP_001893378.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_001893379.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_001893380.1 PFAM: UspA domain protein; KEGG: rso:RS02117 hypothetical protein YP_001893381.1 KEGG: rso:RS02118 hypothetical protein YP_001893382.1 KEGG: rso:RS02119 hypothetical protein YP_001893383.1 PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: rso:RSp1564 probable cytochrome c oxidase polypeptide II (cytochrome BB3 subunit 2) transmembrane protein YP_001893384.1 KEGG: rso:RSp1565 probable cytochrome c oxidase polypeptide I (cytochrome BB3 subunit 1) oxidoreductase protein; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_001893385.1 PFAM: cytochrome c oxidase subunit III; KEGG: rso:RSp1566 probable cytochrome-C oxidase oxidoreductase protein YP_001893386.1 PFAM: cytochrome c oxidase subunit III; KEGG: rso:RSp1567 probable cytochrome-C oxidase subunit III oxidoreductase protein YP_001893387.1 KEGG: rso:RS02124 hypothetical protein YP_001893388.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: rso:RS02139 hypothetical protein YP_001893389.1 PFAM: ABC transporter transmembrane region; response regulator receiver; ABC transporter; ATP-binding region ATPase domain protein; SMART: AAA ATPase; KEGG: bpt:Bpet2380 ABC transporter, ATP-binding protein YP_001893390.1 KEGG: bpt:Bpet2378 hypothetical protein YP_001893391.1 PFAM: glycosyl transferase group 1; KEGG: reu:Reut_B4390 glycosyl transferase, group 1 YP_001893392.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tbd:Tbd_0734 short chain dehydrogenase YP_001893393.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: reu:Reut_B4387 histidinol-phosphate phosphatase:HAD-superfamily hydrolase subfamily IIIA YP_001893394.1 PFAM: glycosyl transferase family 9; KEGG: reu:Reut_B4386 lipopolysaccharide heptosyltransferase II YP_001893395.1 PFAM: Carbamoyltransferase; KEGG: reu:Reut_B4385 carbamoyltransferase YP_001893396.1 PFAM: glycosyl transferase family 2; KEGG: bmu:Bmul_5443 glycosyl transferase family 2 YP_001893397.1 PFAM: glycosyl transferase family 9; KEGG: bmu:Bmul_5444 glycosyl transferase family 9 YP_001893398.1 KEGG: reu:Reut_B4382 glycosyl transferase, group 1 YP_001893399.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: xft:PD1543 dTDP-glucose 4-6-dehydratase YP_001893400.1 PFAM: glycosyl transferase family 2; KEGG: bmn:BMA10247_A2267 glycosyl transferase, group 2 family protein YP_001893401.1 PFAM: LmbE family protein; KEGG: bxe:Bxe_B2231 hypothetical protein YP_001893403.1 KEGG: reu:Reut_A1581 natural resistance-associated macrophage protein YP_001893404.1 KEGG: reu:Reut_B4638 hypothetical protein YP_001893405.1 KEGG: bxe:Bxe_A2030 hypothetical protein YP_001893406.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azo:azo1732 short-chain dehydrogenase family protein YP_001893407.1 PFAM: acriflavin resistance protein; KEGG: rso:RS02154 probable transport transmembrane protein YP_001893408.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RS02155 transport transmembrane protein YP_001893409.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS02156 outer membrane drug efflux lipoprotein YP_001893410.1 KEGG: rso:RS02157 hypothetical protein YP_001893411.1 PFAM: Endoribonuclease L-PSP; KEGG: bur:Bcep18194_B0063 endoribonuclease L-PSP YP_001893412.1 PFAM: FAD dependent oxidoreductase; KEGG: bxe:Bxe_B0799 D-amino-acid dehydrogenase YP_001893413.1 PFAM: MlrC domain protein; Microcystin LR degradation protein MlrC-like; KEGG: rme:Rmet_4481 MlrC-like protein YP_001893414.1 KEGG: rme:Rmet_4480 amidase, hydantoinase/carbamoylase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20 YP_001893415.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rme:Rmet_4479 ABC transporter YP_001893416.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rme:Rmet_4478 ABC transporter YP_001893417.1 PFAM: inner-membrane translocator; KEGG: rme:Rmet_4477 inner-membrane translocator YP_001893418.1 PFAM: inner-membrane translocator; KEGG: rme:Rmet_4476 inner-membrane translocator YP_001893419.1 KEGG: rme:Rmet_4475 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein YP_001893421.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_4603 GntR-like protein YP_001893422.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide YP_001893423.1 PFAM: Carbohydrate-selective porin OprB; KEGG: rso:RSp1632 porin B precursor outer (glucose porin) transmembrane protein YP_001893424.1 KEGG: rso:RSp1633 probable D-xylose-binding periplasmic ABC transporter protein; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator YP_001893425.1 with XylFH is part of the high affinity xylose ABC transporter YP_001893426.1 PFAM: inner-membrane translocator; KEGG: rso:RSp1635 probable xylose transmembrane ABC transporter protein YP_001893427.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: rso:RS02194 oxidoreductase protein YP_001893428.1 KEGG: rme:Rmet_2737 hypothetical protein YP_001893429.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RS02195 probable transcription regulator transcription regulator protein YP_001893430.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RS02196 hypothetical protein YP_001893431.1 PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: rso:RS02197 probable transcriptional regulator transcription regulator protein YP_001893432.1 KEGG: rme:Rmet_5762 hypothetical protein YP_001893433.1 KEGG: rme:Rmet_5763 hypothetical protein YP_001893434.1 PFAM: regulatory protein MarR; KEGG: rso:RS02203 probable transcription regulator transcription regulator protein YP_001893435.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: rso:RS02204 hypothetical protein YP_001893436.1 KEGG: rso:RS02205 transmembrane protein YP_001893437.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bte:BTH_I0059 AraC family transcriptional regulator YP_001893438.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bpl:BURPS1106A_0069 acyl-CoA dehydrogenase YP_001893439.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001893440.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bte:BTH_I0062 fatty oxidation complex, alpha subunit YP_001893441.1 KEGG: reh:H16_A0025 predicted signal transduction protein containing PAS, GGDEF and EAL domains; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001893442.1 PFAM: protein of unknown function DUF305; KEGG: rme:Rmet_5398 protein of unknown function DUF305 YP_001893443.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: rle:RL1137 hypothetical protein YP_001893444.1 PFAM: heat shock protein DnaJ domain protein; KEGG: reh:H16_A1620 DnaJ-class molecular chaperone YP_001893445.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3041 extracellular solute-binding protein YP_001893446.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: saz:Sama_2448 sensory box protein YP_001893447.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pap:PSPA7_0301 MdcR YP_001893448.1 TIGRFAM: malonate decarboxylase alpha subunit; KEGG: pap:PSPA7_0292 malonate decarboxylase alpha subunit YP_001893449.1 catalyzes the reversible formation of 2'-(5''-triphosphoribosyl)-3'dephospho-CoA from 3-dephospho-CoA YP_001893450.1 TIGRFAM: malonate decarboxylase acyl carrier protein; PFAM: malonate decarboxylase delta subunit; KEGG: pna:Pnap_0948 malonate decarboxylase delta subunit YP_001893451.1 The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A YP_001893452.1 TIGRFAM: malonate decarboxylase gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: pna:Pnap_0950 malonate decarboxylase gamma subunit YP_001893453.1 TIGRFAM: malonate transporter, MadL subunit; PFAM: malonate transporter MadL subunit; KEGG: reu:Reut_A1611 malonate transporter MadL subunit YP_001893454.1 TIGRFAM: malonate transporter, MadM subunit; PFAM: malonate/sodium symporter MadM subunit; KEGG: bch:Bcen2424_1268 malonate transporter, MadM subunit YP_001893455.1 Catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein YP_001893456.1 TIGRFAM: malonate decarboxylase epsilon subunit; PFAM: Acyl transferase; KEGG: pae:PA0214 probable acyl transferase YP_001897600.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001897601.1 binds the polymerase to DNA and acts as a sliding clamp YP_001897602.1 negatively supercoils closed circular double-stranded DNA YP_001897603.1 PFAM: N-6 DNA methylase; KEGG: eca:ECA0584 restriction enzyme alpha subunit YP_001897605.1 KEGG: ava:Ava_4685 hypothetical protein YP_001897606.1 KEGG: rso:RSc3434 hypothetical protein YP_001897607.1 PFAM: Integrase catalytic region; KEGG: rme:Rmet_6067 integrase, catalytic region YP_001897608.1 PFAM: transposase IS3/IS911 family protein; KEGG: rme:Rmet_6068 transposase IS3/IS911 YP_001897609.1 PFAM: Fimbrial protein; KEGG: pae:PA5284 hypothetical protein YP_001897610.1 KEGG: bch:Bcen2424_2530 hypothetical protein YP_001897611.1 PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: rso:RSc1779 probable activation/secretion signal peptide protein YP_001897613.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rso:RSc2102 probable transcription regulator protein YP_001897614.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: rso:RSc2103 probable amino-acid-binding periplasmic (PBP) ABC transporter protein YP_001897615.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2104 probable amino-acid transmembrane ABC transporter protein YP_001897616.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2105 probable amino-acid transmembrane ABC transporter protein YP_001897617.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2106 probable amino-acid ATP-binding ABC transporter protein YP_001897618.1 PFAM: protein of unknown function UPF0187; KEGG: rso:RSc3414 probable transmembrane protein YP_001897619.1 KEGG: reu:Reut_B4310 hypothetical protein YP_001897620.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: reh:H16_B1147 cNMP regulatory protein YP_001897621.1 activates fatty acids by binding to coenzyme A YP_001897622.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: rso:RSc0127 putative hemagglutinin-related protein YP_001897623.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bte:BTH_II0494 acetyltransferase, GNAT family YP_001897624.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bte:BTH_I0996 carboxymuconolactone decarboxylase family protein YP_001897625.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bte:BTH_I0997 RNA polymerase sigma-70 factor, ECF family YP_001897626.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bvi:Bcep1808_3441 PAS/PAC sensor hybrid histidine kinase YP_001897627.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc0129 hypothetical protein YP_001897628.1 PFAM: CBS domain containing protein; HPP family protein?; KEGG: rso:RSc0130 probable transmembrane protein YP_001897629.1 KEGG: rso:RSc0131 probable lipoprotein YP_001897630.1 TIGRFAM: autotransporter-associated beta strand repeat protein; KEGG: rso:RSc0131 probable lipoprotein YP_001897631.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: rso:RSc0132 probable transcription regulator protein YP_001897632.1 PFAM: GYD family protein; KEGG: rso:RSc0133 hypothetical protein YP_001897633.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001897634.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_001897635.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_001897636.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_001897637.1 PFAM: protein of unknown function DUF344; KEGG: rso:RSc0138 hypothetical protein YP_001897638.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001897639.1 KEGG: rso:RSc0140 putative exodeoxyribonuclease III protein; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_001897640.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_001897641.1 PFAM: band 7 protein; KEGG: rso:RSc0145 putative transmembrane protein YP_001897642.1 PFAM: protein of unknown function DUF218; KEGG: rso:RSc0146 probable lipoprotein transmembrane YP_001897643.1 PFAM: peptidase M48 Ste24p; KEGG: rso:RSc0153 hypothetical signal peptide protein YP_001897644.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc0154 muropeptide transporter YP_001897645.1 PFAM: protein of unknown function DUF185; KEGG: rso:RSc0155 hypothetical protein YP_001897646.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rso:RSc0156 short chain dehydrogenase YP_001897647.1 KEGG: rso:RSc0157 hypothetical protein YP_001897648.1 PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rso:RSc0158 probable arginase protein YP_001897649.1 TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: rso:RSc0159 probable acetylornithine aminotransferase protein YP_001897650.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0160 probable transcription regulator protein YP_001897651.1 PFAM: regulatory protein TetR; KEGG: rso:RSc0162 probable transcription regulator protein YP_001897652.1 PFAM: secretion protein HlyD family protein; KEGG: rso:RSc0163 probable lipoprotein YP_001897653.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc0164 probable ATP-binding ABC transporter protein YP_001897654.1 PFAM: ABC-2 type transporter; KEGG: rso:RSc0165 probable transmembrane protein YP_001897655.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RSc0166 probable outer membrane channel lipoprotein YP_001897656.1 KEGG: rso:RSc0174 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein YP_001897657.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_001897658.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: rso:RSc0177 probable UDP-N-acetylglucosamine pyrophosphorylase protein YP_001897659.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_001897660.1 KEGG: scl:sce2246 putative monooxygenase YP_001897662.1 PFAM: Patatin; KEGG: rso:RSc0221 hypothetical protein YP_001897663.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bte:BTH_II1160 alcohol dehydrogenase, zinc-containing YP_001897664.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bte:BTH_II1158 transcriptional regulator, LysR family YP_001897665.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bch:Bcen2424_6540 pyruvate decarboxylase YP_001897666.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: azo:azo0331 hypothetical protein YP_001897667.1 PFAM: PRC-barrel domain protein; KEGG: bvi:Bcep1808_5723 PRC-barrel domain protein YP_001897668.1 KEGG: bxe:Bxe_B1328 hypothetical protein YP_001897669.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMc01667 hypothetical protein YP_001897670.1 PFAM: aminotransferase class I and II; KEGG: rso:RSc0229 putative amino transferase protein YP_001897671.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_A1506 hypothetical protein YP_001897672.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_A1507 hypothetical protein YP_001897673.1 KEGG: mes:Meso_0629 hypothetical protein YP_001897674.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr7376 putative integral membrane transporter protein YP_001897675.1 PFAM: Glutathione S-transferase domain; KEGG: bpe:BP1300 putative glutathione transferase YP_001897676.1 PFAM: low temperature requirement A; KEGG: rso:RSc0230 probable transmembrane protein YP_001897677.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc0231 putative (homoserine/homoserine lactone) efflux transmembrane protein YP_001897679.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc0233 putative integral membrane transmembrane protein YP_001897680.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RSc0234 probable transcription regulator protein YP_001897681.1 PFAM: transcriptional activator domain; KEGG: gur:Gura_0766 tetratricopeptide TPR_4 YP_001897682.1 KEGG: reu:Reut_A0370 hypothetical protein YP_001897683.1 PFAM: protein of unknown function DUF427; KEGG: rso:RSc0235 hypothetical protein YP_001897684.1 PFAM: Rh family protein/ammonium transporter; KEGG: rme:Rmet_4750 Rh-like protein/ammonium transporter YP_001897685.1 KEGG: rso:RSc0236 hypothetical/unknown signal peptide protein YP_001897686.1 KEGG: rso:RSc0237 putative methylmalonyl-CoA mutase protein; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: ArgK protein; methylmalonyl-CoA mutase; cobalamin B12-binding domain protein YP_001897687.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_001897688.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: rso:RSc0253 hypothetical protein YP_001897689.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bpl:BURPS1106A_3175 acetyltransferase, GNAT family YP_001897690.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: rso:RSc0254 hypothetical protein YP_001897691.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: rso:RSc0255 hypothetical protein YP_001897692.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bxe:Bxe_B1164 peptidase C56, PfpI YP_001897693.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc0256 hypothetical haloacetate dehalogenase H-1 protein YP_001897694.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: bpm:BURPS1710b_A0200 putative hydroxylase YP_001897695.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: bxe:Bxe_B0793 hypothetical protein YP_001897696.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bxe:Bxe_B0794 TonB-dependent siderophore receptor YP_001897697.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001897698.1 PFAM: protein of unknown function DUF1446; KEGG: reh:H16_B0988 hypothetical protein YP_001897699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: reu:Reut_B5206 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal YP_001897700.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_3507 short-chain dehydrogenase/reductase SDR YP_001897701.1 PFAM: carboxyl transferase; KEGG: bps:BPSS2031 acetyl-CoA carboxylase carboxyltransferase YP_001897702.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: vei:Veis_1896 acyl-CoA dehydrogenase domain protein YP_001897703.1 PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: reu:Reut_B4460 biotin/lipoyl attachment:carbamoyl-phosphate synthase L chain, ATP-binding:carbamoyl-phosphate synthetase large chain, N-terminal:biotin carboxylase, C-terminal YP_001897704.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpe:RPE_2253 AMP-dependent synthetase and ligase YP_001897705.1 PFAM: regulatory protein TetR; KEGG: bpd:BURPS668_A2924 transcriptional regulator, TetR family YP_001897706.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc0258 putative beta lactamase protein YP_001897707.1 PFAM: protein of unknown function DUF1289; KEGG: rso:RSc0259 hypothetical protein YP_001897708.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rso:RSc0260 hypothetical protein YP_001897709.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA YP_001897710.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rso:RSc0262 putative 2-hydroxyacid dehydrogenase oxidoreductase protein YP_001897711.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rso:RSc0265 probable acyl-CoA carboxylase alpha chain protein YP_001897712.1 KEGG: rso:RSc0266 probable biotin synthase protein; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_001897713.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001897714.1 KEGG: rso:RSc0268 hypothetical signal peptide protein YP_001897715.1 PFAM: carboxyl transferase; KEGG: rso:RSc0269 putative propionyl-CoA carboxylase (beta subunit) protein YP_001897716.1 KEGG: rso:RSc0270 hypothetical protein YP_001897717.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rso:RSc0271 hypothetical protein YP_001897718.1 PFAM: DSBA oxidoreductase; KEGG: rso:RSc0273 putative 2-hydroxychromene-2-carboxylate isomerase protein YP_001897719.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc0274 putative acyl CoA dehydrogenase oxidoreductase protein YP_001897720.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rso:RSc0275 short chain dehydrogenase YP_001897721.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001897722.1 PFAM: carbonic anhydrase; KEGG: rso:RSc0277 probable carbonic anhydrase protein YP_001897723.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol YP_001897724.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc0279 probable acyl-CoA dehydrogenase oxidoreductase protein YP_001897725.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: rso:RSc0280 putative transcription regulator protein YP_001897726.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc0281 hypothetical protein YP_001897727.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rso:RSc0282 hypothetical protein YP_001897728.1 KEGG: rso:RSc0283 hypothetical protein YP_001897729.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc0284 short chain dehydrogenase YP_001897730.1 PFAM: DSBA oxidoreductase; KEGG: rso:RSc0285 probable thiol:disulfide interchange signal peptide protein YP_001897731.1 PFAM: Sporulation domain protein; KEGG: rso:RSc0286 hypothetical protein YP_001897732.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001897733.1 PFAM: Domain of unknown function DUF1840; KEGG: rso:RSc0288 hypothetical protein YP_001897734.1 PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: reu:Reut_A2901 rubrerythrin:ferritin and Dps YP_001897735.1 KEGG: reu:Reut_A0125 protein of unknown function DUF883, ElaB YP_001897736.1 PFAM: protein of unknown function DUF1328; KEGG: cak:Caul_4145 protein of unknown function DUF1328 YP_001897737.1 PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rso:RSc0289 transmembrane sensor kinase VsrA transcription regulator protein YP_001897738.1 PFAM: Entericidin EcnAB; KEGG: rso:RSc0290 probable entericidin precursor lipoprotein YP_001897739.1 PFAM: response regulator receiver; KEGG: rso:RSc0291 putative transcription regulator protein YP_001897740.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rso:RSc0292 response regulator transcription regulator protein YP_001897741.1 KEGG: rso:RSc0293 hypothetical signal peptide protein YP_001897742.1 KEGG: rso:RSc0294 probable 5-methyltetrahydrofolate--homocysteine methyltransferase (methionine synthase, vitamin-B12 dependent isozyme) protein; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein YP_001897743.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aav:Aave_3654 glyoxalase/bleomycin resistance protein/dioxygenase YP_001897744.1 PFAM: homocysteine S-methyltransferase; KEGG: rso:RSc0295 probable 5-methyltetrahydrofolate--homocysteine methyltransferase (methionine synthase, vitamin-B12 dependent isozyme) protein YP_001897745.1 PFAM: Rhodanese domain protein; KEGG: rso:RSc0296 hypothetical protein YP_001897746.1 KEGG: rso:RSc0297 hypothetical protein YP_001897747.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc0298 probable B-ketoadipate enol-lactone hydrolase protein YP_001897748.1 KEGG: rso:RSc0299 putative proline-rich signal peptide protein YP_001897749.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rso:RSc0300 probable transcription regulator protein YP_001897750.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rso:RSc0301 hypothetical protein YP_001897751.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rso:RSc0302 probable transcription regulator protein YP_001897752.1 PFAM: Luciferase-like monooxygenase; KEGG: sso:SSO1532 hypothetical protein YP_001897753.1 PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A4234 ABC branched chain amino acid family transporter, periplasmic ligand binding protein YP_001897754.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001897755.1 KEGG: rso:RSc0305 hypothetical protein YP_001897756.1 PFAM: Patatin; KEGG: rso:RSc0306 hypothetical protein YP_001897757.1 PFAM: glutathione peroxidase; KEGG: rso:RSc0307 putative glutathione peroxidase transmembrane protein YP_001897758.1 KEGG: rso:RSc0308 hypothetical protein YP_001897759.1 TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: rso:RSc0309 putative transferase protein YP_001897760.1 PFAM: Sporulation domain protein; KEGG: rso:RSc0310 putative signal peptide protein YP_001897761.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_001897762.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_001897763.1 PFAM: protein of unknown function DUF140; KEGG: rso:RSc0313 probable transmembrane protein YP_001897764.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc0314 probable ATP-binding ABC transporter protein YP_001897765.1 PFAM: Mammalian cell entry related domain protein; KEGG: rso:RSc0315 probable signal peptide protein YP_001897766.1 KEGG: rso:RSc0316 probable lipoprotein YP_001897767.1 PFAM: VanZ family protein; KEGG: rso:RSc0317 probable transmembrane protein YP_001897768.1 PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B3681 major facilitator superfamily MFS_1 YP_001897769.1 PFAM: IucA/IucC family protein; KEGG: bbt:BBta_0635 putative siderophore biosynthesis protein YP_001897770.1 KEGG: rso:RSc0319 probable non-hemolytic phospholipase C (phosphatidylcholine cholinephosphohydrolase) signal peptide protein; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756 YP_001897772.1 KEGG: rso:RSc0320 hypothetical protein YP_001897773.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001897774.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_001897775.1 KEGG: rso:RSc0324 hypothetical protein YP_001897776.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_001897777.1 PFAM: protein of unknown function DUF493; KEGG: rso:RSc0326 hypothetical protein YP_001897778.1 PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: rso:RSc0327 probable penicillin-binding (D-alanyl-D-alanine carboxypeptidase) transmembrane protein YP_001897779.1 KEGG: rso:RSc0328 probable transmembrane protein YP_001897780.1 KEGG: rso:RSc0329 putative ferredoxin 2Fe-2S protein YP_001897781.1 involved in the transport of C4-dicarboxylates across the membrane YP_001897782.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RSc0331 probable C4-dicarboxylate transport sensor kinase transcription regulator protein YP_001897783.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RSc0332 probable C4-dicarboxylate transport response regulator transcription regulator protein YP_001897784.1 KEGG: rso:RSc1547 hypothetical protein YP_001897785.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RSc0333 putative transmembrane protein YP_001897786.1 PFAM: Appr-1-p processing domain protein; KEGG: rso:RSc0334 hypothetical protein YP_001897787.1 KEGG: rso:RSc0335 putative transmembrane protein YP_001897788.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: reu:Reut_A0287 lysine exporter protein (LysE/YggA) YP_001897789.1 KEGG: rso:RSc0338 probable Mg(2+) chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001897790.1 KEGG: rso:RSc0339 probable transmembrane protein YP_001897791.1 PFAM: protein of unknown function DUF526; KEGG: rso:RSc0340 hypothetical protein YP_001897792.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc0341 probable signal peptide protein YP_001897793.1 PFAM: nitrogen regulatory protein P-II; KEGG: rso:RSc0342 probable nitrogen regulatory P-II transcription regulator protein YP_001897794.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: reh:H16_A0321 ammonium transporter YP_001897795.1 TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: rso:RSc0344 hypothetical protein YP_001897796.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_001897797.1 PFAM: PTS system fructose subfamily IIA component; KEGG: rso:RSc0346 hypothetical protein YP_001897798.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: rso:RSc0347 probable phosphocarrier protein HPr (phosphohistidinoprotein-hexose phosphotransferase) YP_001897799.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: rso:RSc0348 probable phosphoenolpyruvate-protein phosphotransferase transmembrane YP_001897800.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rso:RSc0349 putative bacterioferritin-associated ferredoxin protein YP_001897801.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: rso:RSc0350 probable bacterioferritin BFR (cytochrome b-1) (cytochrome b-557) protein YP_001897802.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rso:RSc0351 molybdopterin biosynthesis protein MoeB YP_001897803.1 KEGG: rso:RSc0352 putative carboxy-terminal processing protease transmembrane protein; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001897804.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_001897805.1 PFAM: Rhodanese domain protein; KEGG: rso:RSc0354 probable transmembrane protein YP_001897806.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: rso:RSc0355 probable glutaredoxin 3 (GRX3) protein YP_001897807.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_001897808.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001897809.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rso:RSc0358 putative tRNA/rRNA methyltransferase protein YP_001897810.1 KEGG: rso:RSc0359 putative competence protein F-related protein YP_001897811.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rso:RSc0360 putative biotin synthesis protein (methyltransferase) YP_001897812.1 TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region; KEGG: rso:RSc0362 putative cytochrome c oxidase polypeptide II precursor (cytochrome AA3 subunit 2) transmembrane protein YP_001897813.1 KEGG: rso:RSc0363 probable cytochrome c oxidase polypeptide I (cytochrome AA3 subunit 1) transmembrane protein; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_001897814.1 KEGG: rso:RSc0364 hypothetical protein YP_001897815.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_001897816.1 KEGG: rso:RSc0366 probable transmembrane protein YP_001897817.1 PFAM: cytochrome c oxidase subunit III; KEGG: rso:RSc0367 probable cytochrome c oxidase subunit III transmembrane protein YP_001897818.1 KEGG: rso:RSc0368 probable transmembrane protein YP_001897819.1 KEGG: rso:RSc0369 putative transmembrane cytochrome oxidase complex biogenesis factor transmembrane protein YP_001897820.1 KEGG: rso:RSc0370 probable transmembrane protein YP_001897821.1 PFAM: cytochrome oxidase assembly; KEGG: rso:RSc0371 putative heme O oxygenase (cytochrome AA3-controlling) transmembrane protein YP_001897822.1 converts protoheme IX and farnesyl diphosphate to heme O YP_001897823.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: rso:RSc0373 probable lipoprotein YP_001897824.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_001897825.1 KEGG: rso:RSc0375 probable transmembrane protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001897826.1 PFAM: OsmC family protein; KEGG: rso:RSc0376 hypothetical protein YP_001897827.1 PFAM: Pirin domain protein; KEGG: rso:RSc0377 putative pirin-like protein YP_001897828.1 PFAM: glycosyl transferase family 3; KEGG: rso:RSc0378 hypothetical protein YP_001897829.1 KEGG: rso:RSc0379 putative nitrate ATP-binding ABC transporter protein; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase YP_001897830.1 TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc0380 putative nitrate transmembrane ABC transporter protein YP_001897831.1 KEGG: rso:RSc0381 putative nitrate transporter protein YP_001897832.1 PFAM: ANTAR domain protein; KEGG: rso:RSc0382 probable response regulator transcription regulator protein YP_001897833.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rso:RSc0383 hypothetical protein YP_001897834.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: rso:RSc0384 probable maleylacetoacetate isomerase (glutathione transferase zeta 1) protein YP_001897835.1 KEGG: rso:RSc0386 putative cell division protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001897836.1 PFAM: peptidase M16 domain protein; KEGG: rso:RSc0387 putative zinc protease protein YP_001897837.1 PFAM: peptidase M16 domain protein; KEGG: rso:RSc0388 putative zinc protease-like signal peptide protein YP_001897838.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: rso:RSc0389 hypothetical protein YP_001897839.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001897840.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rso:RSc0391 probable ferredoxin protein YP_001897841.1 KEGG: rso:RSc0392 probable proline-rich transmembrane protein YP_001897842.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001897843.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_001897844.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_001897845.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_001897846.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein YP_001897847.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rso:RSc0398 hypothetical protein YP_001897848.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_001897849.1 KEGG: rso:RSc0400 hypothetical protein YP_001897850.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: rso:RSc0401 probable A/G-specific adenine glycosylase protein YP_001897851.1 PFAM: peptidase S16 lon domain protein; KEGG: rso:RSc0402 hypothetical protein YP_001897852.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc0403 hypothetical protein YP_001897853.1 KEGG: rso:RSc0404 hypothetical signal peptide protein YP_001897854.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_001897855.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: rso:RSc0406 putative nitrogen regulatory IIA (enzyme IIA-NTR) (phosphotransferase enzyme II, A component) transcription regulator protein YP_001897856.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: rso:RSc0407 putative sigma-54 modulation protein YP_001897857.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_001897858.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc0409 probable ATP-binding ABC transporter protein YP_001897859.1 TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: rso:RSc0410 putative signal peptide protein YP_001897860.1 PFAM: protein of unknown function DUF1239; KEGG: rso:RSc0411 probable transmembrane protein YP_001897861.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: rso:RSc0412 hypothetical protein YP_001897862.1 KEGG: rso:RSc0413 hypothetical protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_001897863.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: rso:RSc0414 putative glutathione-regulated potassium-efflux system K+/H+ antiporter transmembrane protein YP_001897864.1 KEGG: rso:RSc0415 hypothetical protein YP_001897865.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: rso:RSc0416 hypothetical protein YP_001897866.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001897867.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc0418 probable transport transmembrane protein YP_001897868.1 PFAM: protein of unknown function DUF355; KEGG: rso:RSc0419 probable transmembrane protein YP_001897869.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: rso:RSc0420 probable excinuclease ABC subunit A (DNA repair ATP-binding) ABC transporter protein YP_001897870.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc0421 putative multidrug-efflux transporter transmembrane protein YP_001897871.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_001897872.1 KEGG: eca:ECA1059 putative integrase YP_001897873.1 PFAM: transposase IS4 family protein; KEGG: bxe:Bxe_C0489 putative transposase IS4 YP_001897875.1 PFAM: transposase IS4 family protein; KEGG: bxe:Bxe_C0489 putative transposase IS4 YP_001897876.1 KEGG: rfr:Rfer_1983 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001897877.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: reh:H16_B1055 transcriptional regulator, PspF-family YP_001897878.1 PFAM: coenzyme PQQ biosynthesis protein A; KEGG: mfa:Mfla_0021 coenzyme PQQ biosynthesis protein A YP_001897879.1 KEGG: rsh:Rsph17029_1399 putative glucose/sorbosone dehydrogenase YP_001897880.1 PFAM: cytochrome c class I; KEGG: psa:PST_0367 hypothetical protein YP_001897881.1 possibly involved in transport of pyrroloquinoline quinone transport YP_001897882.1 Required in the synthesis of PPQ, but its exact function is unknown YP_001897883.1 PFAM: coenzyme PQQ synthesis D; KEGG: bxe:Bxe_B2469 pyrroloquinoline quinone synthesis D YP_001897884.1 KEGG: pna:Pnap_0729 coenzyme PQQ biosynthesis protein E; TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001897885.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_0544 periplasmic sensor signal transduction histidine kinase YP_001897886.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_0543 two component transcriptional regulator, winged helix family YP_001897887.1 KEGG: dac:Daci_3135 thiosulfate reductase cytochrome b subunit (membrane anchoring protein) YP_001897888.1 PFAM: oxidoreductase molybdopterin binding; KEGG: dac:Daci_3134 oxidoreductase molybdopterin binding YP_001897889.1 TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: dac:Daci_3133 pentapeptide MXKDX repeat protein YP_001897890.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; cytochrome c biogenesis protein transmembrane region; Redoxin domain protein; KEGG: pol:Bpro_0539 cytochrome c biogenesis protein, transmembrane region YP_001897891.1 KEGG: rso:RSc0424 probable signal peptide protein YP_001897892.1 KEGG: rso:RSc0425 hypothetical protein YP_001897893.1 KEGG: bur:Bcep18194_A6097 hypothetical protein YP_001897894.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_001897895.1 PFAM: polysaccharide deacetylase; KEGG: bur:Bcep18194_A6095 polysaccharide deacetylase YP_001897896.1 PFAM: MMPL domain protein; KEGG: bch:Bcen2424_2764 exporter-like protein YP_001897897.1 KEGG: bam:Bamb_2815 hypothetical protein YP_001897898.1 KEGG: rso:RSc0431 hypothetical protein YP_001897899.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: rso:RSc0432 hypothetical protein YP_001897900.1 KEGG: rso:RSc0433 probable transmembrane protein YP_001897901.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides YP_001897902.1 PFAM: glycosyl transferase family 2; KEGG: rso:RSc0436 hypothetical protein YP_001897903.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: rso:RSc0437 probable transmembrane protein YP_001897904.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: rso:RSc0438 probable transmembrane protein YP_001897905.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rso:RSc0439 putative lipase/esterase protein YP_001897906.1 KEGG: rso:RSc0440 putative signal peptide protein YP_001897907.1 KEGG: rso:RSc0441 probable thermoresistant gluconokinase (gluconate kinase 2) protein; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase YP_001897908.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rso:RSc0442 acyl-CoA synthetase YP_001897909.1 KEGG: rso:RSc0443 probable glycin-rich signal peptide protein YP_001897910.1 KEGG: rso:RSc0444 hypothetical signal peptide protein YP_001897911.1 PFAM: peptidase C39 bacteriocin processing; KEGG: rso:RSc0445 hypothetical signal peptide protein YP_001897912.1 KEGG: rso:RSc0446 probable lipoprotein YP_001897913.1 KEGG: rso:RSc0447 hypothetical protein YP_001897914.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_001897915.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_001897916.1 PFAM: Ion transport 2 domain protein ; K channel inward rectifier conserved region 2 domain protein; KEGG: rso:RSc0450 putative ATP-sensitive inward rectifier potassium channel related transmembrane protein YP_001897917.1 PFAM: nucleoside recognition domain protein; KEGG: rso:RSc0452 putative transmembrane protein YP_001897918.1 KEGG: rso:RSc0453 probable transmembrane protein YP_001897919.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: rso:RSc0454 putative oxidoreductase protein YP_001897920.1 PFAM: histidine triad (HIT) protein; KEGG: rso:RSc0455 hypothetical protein YP_001897921.1 PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: rso:RSc0456 probable ATP-binding transport ABC transporter protein YP_001897922.1 PFAM: protein of unknown function DUF971; KEGG: rso:RSc0457 hypothetical protein YP_001897923.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_001897924.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: rso:RSc0459 hypothetical protein YP_001897925.1 PFAM: Sterol-binding domain protein; KEGG: rso:RSc0460 hypothetical protein YP_001897926.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions YP_001897927.1 PFAM: thiopurine S-methyltransferase; Methyltransferase type 12; KEGG: rso:RSc0462 hypothetical protein YP_001897928.1 PFAM: Na+/solute symporter; KEGG: rso:RSc0463 probable sodium/solute symporter transmembrane protein YP_001897929.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: rso:RSc0464 hypothetical protein YP_001897930.1 PFAM: protein of unknown function DUF502; KEGG: rso:RSc0465 probable transmembrane protein YP_001897931.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001897932.1 KEGG: rso:RSc0467 probable transmembrane protein YP_001897933.1 converts dATP to dAMP and pyrophosphate YP_001897934.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rso:RSc0469 hypothetical protein YP_001897935.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: rso:RSc0470 hypothetical protein YP_001897936.1 PFAM: coenzyme A transferase; KEGG: rso:RSc0471 putative transferase protein YP_001897937.1 PFAM: regulatory protein TetR; KEGG: rso:RSc0472 putative transcription regulator protein YP_001897938.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rso:RSc0473 putative acyl-CoA dehydrogenase oxidoreductase protein YP_001897939.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: rso:RSc0474 putative 3-hydroxyacyl-CoA dehydrogenase oxidoreductase protein YP_001897940.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001897941.1 PFAM: DegV family protein; KEGG: reu:Reut_A0449 DegV YP_001897942.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001897943.1 PFAM: thioesterase superfamily protein; KEGG: rso:RSc0477 hypothetical protein YP_001897944.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc0478 probable composite ATP-binding transmembrane ABC transporter protein YP_001897945.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0479 putative transcription regulator protein YP_001897946.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: rso:RSc0480 probable glutamate dehydrogenase (NAD(P)+) oxidoreductase protein YP_001897947.1 PFAM: extracellular solute-binding protein family 3; KEGG: rso:RSc0481 probable amino-acid-binding periplasmic (PBP) ABC transporter protein YP_001897948.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc0482 probable glutamate/aspartate transmembrane ABC transporter protein YP_001897949.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc0483 probable glutamate/aspartate transmembrane ABC transporter protein YP_001897950.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc0484 putative glutamate/aspartate transport ATP-binding ABC transporter protein YP_001897951.1 PFAM: glutamine amidotransferase class-II; KEGG: rso:RSc0485 hypothetical protein YP_001897952.1 PFAM: MOFRL domain protein; KEGG: rso:RSc0486 putative hydroxypyruvate reductase oxidoreductase protein YP_001897953.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_001897954.1 KEGG: rso:RSc0488 putative transmembrane protein YP_001897955.1 PFAM: OsmC family protein; KEGG: rso:RSc0489 hypothetical protein YP_001897956.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001897957.1 forms a direct contact with the tRNA during translation YP_001897958.1 KEGG: rso:RSc0492 hypothetical protein YP_001897959.1 PFAM: protein of unknown function DUF583; KEGG: rso:RSc0493 hypothetical protein YP_001897960.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors YP_001897961.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_001897962.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001897963.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_001897964.1 PFAM: Phosphoglycerate mutase; KEGG: rso:RSc0499 putative phosphoglycerate mutase 2 protein YP_001897965.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: reh:H16_A0494 hypothetical protein YP_001897966.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001897967.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001897968.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rso:RSc0502 putative glycerophosphoryl diester phosphodiesterase, periplasmic precursor protein YP_001897969.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_001897970.1 involved in de novo purine biosynthesis YP_001897971.1 PFAM: helix-turn-helix Fis-type; KEGG: rso:RSc0505 DNA-binding protein fis YP_001897972.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: rso:RSc0506 probable NifR3-like protein YP_001897973.1 PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc0507 probable amino acid dehydrogenase transmembrane protein YP_001897974.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase FAD-binding; KEGG: rso:RSc0508 hypothetical protein YP_001897975.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: rso:RSc0509 probable Xaa-Pro aminopeptidase (aminopeptidase P II) protein YP_001897976.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: rso:RSc0510 probable transmembrane protein YP_001897977.1 PFAM: Nucleotidyl transferase; KEGG: rso:RSc0511 putative mannose-1-phosphate guanyltransferase-related protein YP_001897978.1 PFAM: branched-chain amino acid transport; KEGG: rso:RSc0512 probable transmembrane protein YP_001897979.1 PFAM: AzlC family protein; KEGG: rso:RSc0513 hypothetical protein YP_001897980.1 PFAM: aminoglycoside phosphotransferase; KEGG: rso:RSc0514 hypothetical protein YP_001897981.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: rso:RSc0515 probable organic solvent tolerance transmembrane protein YP_001897982.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: rso:RSc0516 probable peptidyl-prolyl cis-trans isomerase (rotamase C) protein YP_001897983.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_001897984.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001897985.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc0519 hypothetical protein YP_001897986.1 KEGG: rso:RSc0520 probable lactoylglutathione lyase (methylglyoxalase) protein; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001897987.1 PFAM: protein of unknown function DUF45; KEGG: rso:RSc0521 hypothetical protein YP_001897988.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: rso:RSc0522 putative acyltransferase transmembrane protein YP_001897989.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate YP_001897990.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001897991.1 KEGG: rso:RSc0525 hypothetical signal peptide protein YP_001897992.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001897993.1 Transfers the fatty acyl group on membrane lipoproteins YP_001897994.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: rso:RSc0528 hypothetical protein YP_001897995.1 KEGG: pfa:PFD1175w Plasmodium falciparum trophozoite antigen r45-like protein YP_001897996.1 contains unknown N-terminal domain/putative metalloprotease C-terminal domain YP_001897997.1 PFAM: PhoH family protein; KEGG: reh:H16_A0527 phosphate starvation-inducible protein PhoH,predicted ATPase YP_001897998.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_001897999.1 KEGG: rso:RSc0532 hypothetical protein YP_001898000.1 KEGG: rso:RSc0533 putative transmembrane protein YP_001898001.1 PFAM: OmpW family protein; KEGG: bmn:BMA10247_3516 outer membrane protein, OmpW family YP_001898002.1 KEGG: rso:RSc0534 probable lipoprotein transmembrane YP_001898003.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_A2778 putative long chain fatty-acid CoA ligase(long-chain acyl-CoA synthetase) YP_001898004.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001898005.1 PFAM: MaoC domain protein dehydratase; KEGG: pfl:PFL_2941 MaoC-like domain protein YP_001898006.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001898007.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_001898008.1 PFAM: regulatory protein TetR; KEGG: rso:RSc0538 putative transcription regulator protein YP_001898009.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: rso:RSc0539 probable ATP-dependent RNA helicase protein YP_001898010.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_001898011.1 PFAM: Pirin domain protein; KEGG: rso:RSc0541 probable pirin-like protein YP_001898012.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0542 probable transcription regulator protein YP_001898013.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSc0543 probable response regulator transcription regulator protein YP_001898014.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: spe:Spro_2546 cupin 2 conserved barrel domain protein YP_001898015.1 KEGG: rso:RSc0544 hypothetical protein YP_001898016.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rso:RSc0545 probable oxidoreductase protein YP_001898017.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_C7601 transcriptional regulator, LysR family YP_001898018.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: bur:Bcep18194_C7599 succinylglutamate desuccinylase/aspartoacylase YP_001898019.1 PFAM: regulatory protein TetR; KEGG: bpd:BURPS668_A2819 transcriptional regulator, TetR family YP_001898020.1 PFAM: FAD dependent oxidoreductase; KEGG: bpd:BURPS668_A2821 arylesterase/monoxygenase YP_001898021.1 PFAM: alpha/beta hydrolase fold; KEGG: bte:BTH_II0402 hydrolase, alpha/beta fold family YP_001898023.1 KEGG: rme:Rmet_4407 hypothetical protein YP_001898024.1 KEGG: rpb:RPB_1591 hypothetical protein YP_001898025.1 KEGG: rru:Rru_A3316 phage integrase YP_001898026.1 KEGG: bxe:Bxe_B2633 ATPase YP_001898027.1 KEGG: mac:MA3443 hypothetical protein YP_001898028.1 PFAM: plasmid replicase; Primase 1; KEGG: bxe:Bxe_A3944 putative replicase YP_001898030.1 PFAM: MT-A70 family protein; SMART: ParB domain protein nuclease; KEGG: smd:Smed_1667 MT-A70 family protein YP_001898034.1 KEGG: mfa:Mfla_1215 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases YP_001898035.1 PFAM: restriction modification system DNA specificity domain; KEGG: mfa:Mfla_1216 restriction modification system DNA specificity domain YP_001898037.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: mfa:Mfla_1220 type I restriction-modification system, M subunit YP_001898039.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: bxe:Bxe_A3938 hypothetical protein YP_001898044.1 KEGG: ajs:Ajs_3592 hypothetical protein YP_001898045.1 KEGG: bmu:Bmul_4115 outer membrane autotransporter barrel domain protein YP_001898046.1 PFAM: helix-turn-helix domain protein; KEGG: ppg:PputGB1_4174 transcriptional regulator, XRE family YP_001898047.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: nmu:Nmul_A2417 transcriptional regulator, LuxR family YP_001898049.1 PFAM: integrase family protein; KEGG: bmu:Bmul_0646 integrase family protein YP_001898050.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RSc0547 putative sugar transporter transmembrane protein YP_001898051.1 PFAM: protein of unknown function DUF485; KEGG: bur:Bcep18194_B1981 protein of unknown function DUF485 YP_001898052.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: bur:Bcep18194_B1980 Na+/solute symporter YP_001898053.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: pna:Pnap_0480 cyclic nucleotide-binding protein YP_001898054.1 3'-5' exonuclease of DNA polymerase III YP_001898055.1 KEGG: rso:RSc0548 hypothetical protein YP_001898056.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: rso:RSc0549 probable transmembrane sensor histidine kinase transcription regulator protein YP_001898057.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSc0550 probable response regulator transcription regulator protein YP_001898058.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_001898059.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_001898060.1 KEGG: rso:RSc0553 hypothetical protein YP_001898061.1 catalyzes the interconversion of succinyl-CoA and succinate YP_001898062.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_001898063.1 PFAM: Integral membrane protein TerC; KEGG: rso:RSc0556 hypothetical protein YP_001898064.1 KEGG: rso:RSc0557 probable type 4 fimbrial pilin signal peptide protein YP_001898065.1 KEGG: rso:RSc0558 type 4 fimbrial pilin signal peptide protein YP_001898066.1 PFAM: O-antigen polymerase; KEGG: rso:RSc0559 hypothetical protein YP_001898067.1 KEGG: bte:BTH_I0649 pilin (bacterial filament) subfamily YP_001898068.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_001898069.1 PFAM: peptidase M48 Ste24p; Tetratricopeptide TPR_2 repeat protein; KEGG: rso:RSc0561 hypothetical signal peptide protein YP_001898070.1 KEGG: rso:RSc0562 hypothetical protein YP_001898071.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc0563 hypothetical protein YP_001898072.1 KEGG: rso:RSc0564 hypothetical protein YP_001898073.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: rso:RSc0565 probable ADP-heptose--lipopolysaccharide heptosyltransferase II protein YP_001898074.1 KEGG: rso:RSc0566 hypothetical protein YP_001898075.1 PFAM: AzlC family protein; KEGG: rso:RSc0568 hypothetical protein YP_001898076.1 PFAM: branched-chain amino acid transport; KEGG: rso:RSc0569 probable transmembrane protein YP_001898077.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc0570 hypothetical protein YP_001898078.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001898079.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001898080.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_001898081.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001898082.1 KEGG: rso:RSc0575 probable phosphoribosylaminoimidazole carboxylase catalytic subunit protein; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_001898083.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_001898084.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: rso:RSc0577 hypothetical protein YP_001898085.1 PFAM: lipolytic protein G-D-S-L family; KEGG: rso:RSc0580 putative lipase / esterase protein YP_001898086.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: rso:RSc0583 probable molybdopterin-guanine dinucleotide biosynthesis protein B YP_001898087.1 KEGG: rso:RSc0584 probable D-alanyl-D-alanine carboxypeptidase signal peptide protein; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C YP_001898088.1 TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: psb:Psyr_3245 ATP-dependent DNA ligase YP_001898089.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: bxe:Bxe_A2329 putative membrane protein, Ku-domain YP_001898090.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc0585 putative transport transmembrane protein YP_001898091.1 KEGG: rso:RSc0586 hypothetical protein YP_001898092.1 KEGG: rso:RSc0587 hypothetical protein YP_001898093.1 PFAM: protein of unknown function DUF1045; KEGG: reh:H16_B1290 hypothetical protein YP_001898094.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: reu:Reut_B4184 amidohydrolase:Amidohydrolase-like YP_001898095.1 KEGG: rso:RSc0588 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001898096.1 PFAM: chemotaxis sensory transducer; KEGG: bxe:Bxe_A1954 methyl-accepting chemotaxis sensory transducer YP_001898097.1 PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_1926 major facilitator superfamily MFS_1 YP_001898098.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001898099.1 KEGG: rme:Rmet_1928 hypothetical protein YP_001898100.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_1929 transcriptional regulator, GntR family YP_001898101.1 PFAM: monooxygenase FAD-binding; KEGG: reh:H16_A0578 2-polyprenyl-6-methoxyphenol hydroxylase or related FAD-dependent oxidoreductase YP_001898102.1 PFAM: Extracellular ligand-binding receptor; KEGG: reh:H16_A0577 ABC-type transporter, periplasmic component: HAAT family YP_001898103.1 PFAM: regulatory protein MarR; KEGG: rso:RSc0590 putative transcription regulator protein YP_001898104.1 KEGG: rso:RSc0591 hypothetical protein YP_001898105.1 KEGG: rso:RSc0592 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001898106.1 KEGG: ani:AN0757.2 hypothetical protein YP_001898107.1 KEGG: rso:RSc0593 hypothetical protein YP_001898108.1 KEGG: rso:RSc0594 hypothetical protein YP_001898109.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RSc0595 putative outer membrane receptor signal peptide protein YP_001898110.1 KEGG: bja:bll7411 hypothetical protein YP_001898111.1 KEGG: bcn:Bcen_1390 hypothetical protein YP_001898112.1 KEGG: rso:RSc0596 hypothetical protein YP_001898113.1 KEGG: rso:RSc0597 hypothetical protein YP_001898114.1 KEGG: rso:RSc0598 hypothetical protein YP_001898115.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rso:RSc0599 putative transcription regulator protein YP_001898116.1 KEGG: rso:RSc0600 hypothetical protein YP_001898117.1 PFAM: Mammalian cell entry related domain protein; KEGG: rso:RSc0601 probable transmembrane protein YP_001898118.1 PFAM: Paraquat-inducible protein A; KEGG: rso:RSc0602 hypothetical protein YP_001898119.1 PFAM: Paraquat-inducible protein A; KEGG: rso:RSc0603 probable transmembrane protein YP_001898120.1 KEGG: dre:794124 hypothetical protein LOC794124 YP_001898121.1 KEGG: rso:RSc0604 probable hydrolase oxidoreductase protein; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase YP_001898122.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rso:RSp0069 probable bifunctional: glutathione-dependent formaldehyde dehydrogenase and alcohol dehydrogenase class III oxidoreductase protein YP_001898123.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: rso:RSc0606 putative methyl-accepting chemotaxis transmembrane protein YP_001898124.1 PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_5220 glutathione S-transferase, N-terminal domain YP_001898125.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: bxe:Bxe_B2626 periplasmic sensor diguanylate cyclase (GGDEF domain) YP_001898126.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bam:Bamb_6274 antibiotic biosynthesis monooxygenase YP_001898127.1 PFAM: protein of unknown function UPF0118; KEGG: bch:Bcen2424_3807 protein of unknown function UPF0118 YP_001898128.1 PFAM: Saccharopine dehydrogenase; KEGG: bur:Bcep18194_C7476 putative saccharopine dehydrogenase YP_001898129.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates YP_001898130.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_6665 metabolite/H+ symporter, major facilitator superfamily (MFS) YP_001898131.1 PFAM: extracellular solute-binding protein family 1; KEGG: bch:Bcen2424_6664 extracellular solute-binding protein, family 1 YP_001898132.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5626 transcriptional regulator, LysR family YP_001898133.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bch:Bcen2424_6666 diguanylate cyclase YP_001898134.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; TrkA-N domain protein; NmrA family protein; KEGG: bam:Bamb_6340 NmrA family protein YP_001898135.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6341 transcriptional regulator, LysR family YP_001898136.1 KEGG: rso:RSc2698 hypothetical protein YP_001898137.1 KEGG: reu:Reut_B5732 hypothetical protein YP_001898138.1 KEGG: rso:RSc2700 hypothetical protein YP_001898139.1 KEGG: rso:RSc2701 hypothetical protein YP_001898141.1 KEGG: reu:Reut_A0600 hypothetical protein YP_001898142.1 KEGG: rso:RSc2703 hypothetical protein YP_001898143.1 KEGG: rso:RSc2704 hypothetical protein YP_001898144.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bch:Bcen2424_6299 short-chain dehydrogenase/reductase SDR YP_001898145.1 PFAM: regulatory protein DeoR; KEGG: bch:Bcen2424_6298 transcriptional regulator, DeoR family YP_001898146.1 PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: bch:Bcen2424_6297 glycosyl hydrolase, BNR repeat-containing protein YP_001898147.1 PFAM: Na+/solute symporter; KEGG: bch:Bcen2424_6296 Na+/solute symporter YP_001898148.1 KEGG: bch:Bcen2424_6295 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; type III effector Hrp-dependent outers YP_001898149.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: bch:Bcen2424_6293 iron-containing alcohol dehydrogenase YP_001898150.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: bch:Bcen2424_6292 dihydrodipicolinate synthase YP_001898152.1 PFAM: protein of unknown function DUF156; KEGG: bpd:BURPS668_A2846 protein containing YP_001898153.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bpl:BURPS1106A_A2694 cation diffusion facilitator family transporter YP_001898154.1 KEGG: nha:Nham_4399 hypothetical protein YP_001898155.1 PFAM: Domain of unknown function DUF1924; KEGG: pna:Pnap_1532 mono-heme class I cytochrome c YP_001898156.1 PFAM: multihaem cytochrome; KEGG: bmu:Bmul_5868 multihaem cytochrome YP_001898157.1 PFAM: cytochrome B561; KEGG: bvi:Bcep1808_6299 cytochrome b561 YP_001898158.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bmu:Bmul_5866 two component transcriptional regulator, winged helix family YP_001898159.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bmu:Bmul_5865 integral membrane sensor signal transduction histidine kinase YP_001898160.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: reu:Reut_B5170 cation efflux protein YP_001898161.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001898162.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001898163.1 PFAM: protein of unknown function DUF898 transmembrane; KEGG: rso:RSc0643 probable transmembrane protein YP_001898164.1 PFAM: peptidase M48 Ste24p; KEGG: rso:RSc0644 putative transmembrane protein YP_001898165.1 PFAM: GtrA family protein; KEGG: rme:Rmet_0658 GtrA-like protein YP_001898166.1 KEGG: reu:Reut_A2655 hypothetical protein YP_001898167.1 PFAM: TadE family protein; KEGG: reu:Reut_A2654 TadE-like YP_001898168.1 PFAM: TadE family protein; KEGG: reu:Reut_A2653 TadE-like YP_001898169.1 PFAM: type II secretion system protein; KEGG: rme:Rmet_0639 type II secretion system protein YP_001898170.1 PFAM: type II secretion system protein; KEGG: reh:H16_A0710 flp pilus assembly protein TadB YP_001898171.1 PFAM: type II secretion system protein E; KEGG: rme:Rmet_0641 type II secretion system protein E YP_001898172.1 PFAM: response regulator receiver; KEGG: reh:H16_A0712 flp pilus assembly ATPase YP_001898173.1 KEGG: rme:Rmet_0646 putative lipoprotein YP_001898174.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: rme:Rmet_0647 type II and III secretion system protein YP_001898175.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: reh:H16_A0718 flp pilus assembly protein YP_001898176.1 KEGG: reh:H16_A0719 predicted ATPase with chaperone activity YP_001898177.1 PFAM: peptidase A24A prepilin type IV; KEGG: rme:Rmet_0650 peptidase A24A, prepilin type IV YP_001898178.1 PFAM: Flp/Fap pilin component; KEGG: rme:Rmet_0651 Flp/Fap pilin component YP_001898179.1 PFAM: Flp/Fap pilin component; KEGG: rme:Rmet_0652 Flp/Fap pilin component YP_001898180.1 PFAM: Flp/Fap pilin component; KEGG: rme:Rmet_0653 Flp/Fap pilin component YP_001898181.1 KEGG: rme:Rmet_0654 hypothetical protein YP_001898182.1 KEGG: rme:Rmet_0655 hypothetical protein YP_001898183.1 PFAM: glycosyl transferase family 2; KEGG: rme:Rmet_0656 glycosyl transferase, family 2 YP_001898184.1 PFAM: acyltransferase 3; KEGG: azc:AZC_3119 putative acyltransferase YP_001898185.1 PFAM: acyltransferase 3; KEGG: azc:AZC_3119 putative acyltransferase YP_001898186.1 KEGG: rme:Rmet_0657 hypothetical protein YP_001898187.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: rme:Rmet_0659 sigma54 specific transcriptional regulator, fis family YP_001898188.1 PFAM: protein of unknown function DUF477; KEGG: rso:RSc0662 hypothetical protein YP_001898189.1 PFAM: protein of unknown function DUF477; KEGG: rso:RSc0663 putative glycine rich transmembrane protein YP_001898190.1 PFAM: LemA family protein; KEGG: rso:RSc0664 probable lipoprotein YP_001898192.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: rso:RSc0665 probable dihydrodipicolinate synthase-related transmembrane protein YP_001898193.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_001898194.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rso:RSc0667 probable rubredoxin protein YP_001898195.1 PFAM: response regulator receiver; KEGG: rso:RSc0668 probable twitching motility two-component response regulator transcription regulator protein YP_001898196.1 PFAM: response regulator receiver; KEGG: rso:RSc0669 putative twitching motility two-component response regulator transcription regulator protein YP_001898197.1 PFAM: CheW domain protein; KEGG: rso:RSc0670 putative twitching motility protein YP_001898198.1 PFAM: chemotaxis sensory transducer; KEGG: rso:RSc0671 putative twitching motility transmembrane protein YP_001898199.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: rso:RSc0672 putative composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein YP_001898200.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: reu:Reut_A0703 deoxyribodipyrimidine photolyase YP_001898201.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rso:RSc0674 probable ribosomal small subunit pseudouridine synthase A protein YP_001898202.1 PFAM: protein of unknown function DUF179; KEGG: rso:RSc0675 hypothetical protein YP_001898203.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_001898204.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_001898205.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001898206.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_001898207.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: rso:RSc0680 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase transmembrane protein YP_001898208.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_001898209.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: rso:RSc0690 probable transmembrane protein YP_001898210.1 PFAM: glycosyl transferase family 4; KEGG: rso:RSc0689 putative undecaprenyl phosphate N-acetylglucosaminyltransferase transmembrane protein YP_001898211.1 PFAM: glycosyl transferase family 2; KEGG: pmu:PM0512 lsg locus, lipopolysaccharide biosynthesis protein YP_001898212.1 TIGRFAM: rhamnosyltransferase; PFAM: glycosyl transferase family 2; KEGG: noc:Noc_2177 rhamnosyltransferase YP_001898214.1 PFAM: acyltransferase 3; KEGG: mxa:MXAN_3238 acyltransferase family protein YP_001898215.1 PFAM: glycosyl transferase family 2; KEGG: xac:XAC1693 glycosyl transferase YP_001898216.1 PFAM: polysaccharide biosynthesis protein; KEGG: gur:Gura_3189 polysaccharide biosynthesis protein YP_001898217.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rfr:Rfer_1239 DegT/DnrJ/EryC1/StrS aminotransferase YP_001898218.1 KEGG: dol:Dole_1288 hypothetical protein YP_001898219.1 PFAM: WxcM domain protein domain protein; KEGG: sbn:Sbal195_3028 WxcM domain protein YP_001898220.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bch:Bcen2424_0874 dTDP-4-dehydrorhamnose reductase YP_001898221.1 KEGG: rso:RSc0685 probable dTDP-4-dehydrorhamnose 3,5-epimerase protein; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_001898222.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: bmu:Bmul_2597 glucose-1-phosphate thymidylyltransferase YP_001898223.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bmu:Bmul_2596 dTDP-glucose 4,6-dehydratase YP_001898224.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rso:RSc0691 putative phosphomannomutase or phosphoglucomutase protein YP_001898225.1 TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: rso:RSc0692 probable lipopolysaccharide heptosyltransferase protein YP_001898226.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A YP_001898227.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: rso:RSc0694 probable transmembrane protein YP_001898228.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: rso:RSc0695 probable porin (OMP) ABC transporter protein YP_001898229.1 PFAM: Rhodanese domain protein; KEGG: rso:RSc0696 hypothetical protein YP_001898230.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase small; Methyltransferase type 11; KEGG: rso:RSc0697 probable protein-L-isoaspartate O-methyltransferase YP_001898231.1 PFAM: regulatory protein TetR; KEGG: rso:RSc0698 putative transcription regulator protein YP_001898232.1 PFAM: protein of unknown function UPF0153; KEGG: azo:azo0713 hypothetical protein YP_001898233.1 KEGG: rso:RSc0700 probable transmembrane protein YP_001898234.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_001898235.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rso:RSc0702 putative NADH-dependent flavin oxidoreductase oxidoreductase protein YP_001898236.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_001898237.1 KEGG: rso:RSc0707 probable protein with proline-alanine-aspartic repeated motif YP_001898238.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase YP_001898239.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: mms:mma_2905 succinate-semialdehyde dehydrogenase (NADP+) YP_001898240.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: rso:RSc0708 hypothetical protein YP_001898241.1 PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc0709 probable transmembrane protein YP_001898242.1 PFAM: aminotransferase class I and II; KEGG: rso:RSc0710 aminotransferase YP_001898243.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_001898244.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001898245.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis YP_001898246.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_001898247.1 KEGG: rso:RSc0715 probable riboflavin biosynthesis bifunctional RibD : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase protein; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein YP_001898248.1 KEGG: rso:RSc0716 putative type 4 fimbrial pilin related transmembrane protein YP_001898249.1 KEGG: rso:RSc0717 putative type-4 frimbrial pilin-related signal peptide protein YP_001898250.1 KEGG: rso:RSc0719 probable signal peptide protein YP_001898251.1 KEGG: rso:RSc0720 probable transmembrane protein YP_001898252.1 KEGG: rso:RSc0721 probable transmembrane protein YP_001898253.1 KEGG: xft:PD1615 hypothetical protein YP_001898254.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: lpc:LPC_2663 type IV fimbrial biogenesis protein PilV YP_001898255.1 KEGG: noc:Noc_2272 type IV pilus assembly protein PilW YP_001898256.1 KEGG: hch:HCH_05928 hypothetical protein YP_001898257.1 KEGG: noc:Noc_2274 fimbrial assembly protein YP_001898259.1 KEGG: xoo:XOO3195 type IV pilin YP_001898260.1 PFAM: ATP-cone domain protein; KEGG: rso:RSc0728 hypothetical protein YP_001898261.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001898262.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc0730 probable oxidoreductase protein YP_001898263.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: rso:RSc0731 putative thioesterase protein YP_001898264.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: rso:RSc0732 probable TolQ-related transport transmembrane protein YP_001898265.1 TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rso:RSc0733 putative TolR-related transport transmembrane protein YP_001898266.1 TIGRFAM: TonB family protein; protein TolA; PFAM: Tol-Pal system TolA; KEGG: rso:RSc0734 probable TolA-related transport transmembrane protein YP_001898267.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_001898268.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: rso:RSc0736 probable peptidoglycan-associated lipoprotein precursor YP_001898269.1 TIGRFAM: tol-pal system protein YbgF; KEGG: rso:RSc0737 probable transmembrane protein YP_001898270.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: rso:RSc0738 hypothetical signal peptide protein YP_001898271.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: rso:RSc0739 probable transmembrane protein YP_001898272.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bmu:Bmul_1525 xylose isomerase domain protein TIM barrel YP_001898273.1 PFAM: PfkB domain protein; KEGG: bur:Bcep18194_A5029 sugar kinase, ribokinase family YP_001898274.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bmu:Bmul_1527 major facilitator superfamily MFS_1 YP_001898275.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bmu:Bmul_1528 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_001898276.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bch:Bcen2424_1729 transcriptional regulator, LacI family YP_001898277.1 PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: rso:RSc0745 hypothetical protein YP_001898278.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bpl:BURPS1106A_A0453 acyl-CoA dehydrogenase C-terminal domain protein YP_001898279.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: rso:RSc0746 putative alpha-ketoglutarate-dependent taurine dioxygenase oxidoreductase protein YP_001898280.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc0747 hypothetical protein YP_001898281.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc0748 probable transmembrane protein YP_001898282.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc0749 probable ATP-binding ABC transporter protein YP_001898283.1 KEGG: rso:RSc0750 probable transmembrane protein YP_001898284.1 KEGG: rso:RSc0751 hypothetical protein YP_001898285.1 KEGG: rso:RSc0752 probable transmembrane protein YP_001898286.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: rso:RSc0753 probable transmembrane protein YP_001898287.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RSc0754 probable antioxidant (peroxidase) oxidoreductase protein YP_001898288.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: rso:RSc0755 probable transmembrane protein YP_001898289.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc0756 probable glutaryl-CoA dehydrogenase oxidoreductase protein YP_001898290.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rso:RSc0757 putative transcription regulator protein YP_001898291.1 TIGRFAM: tryptophan 2,3-dioxygenase; PFAM: tryptophan 23-dioxygenase; KEGG: rso:RSc0758 putative oxygenase oxidoreductase protein YP_001898292.1 TIGRFAM: kynureninase; PFAM: aminotransferase class V; KEGG: rso:RSc0759 probable hydrolase protein YP_001898293.1 TIGRFAM: arylformamidase; PFAM: cyclase family protein; KEGG: rso:RSc0760 hypothetical protein YP_001898294.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rso:RSc0761 probable transcription regulator protein YP_001898295.1 KEGG: rso:RSc0762 hypothetical protein YP_001898296.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: rso:RSc0763 putative monooxygenase oxidoreductase protein YP_001898297.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_001898298.1 PFAM: protein of unknown function DUF72; KEGG: rso:RSc0765 hypothetical protein YP_001898299.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rso:RSc0766 putative cyclopropane-fatty-acyl-phospholipid synthase protein YP_001898300.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_001898301.1 KEGG: rso:RSc0770 putative transmembrane dehydrogenase (small subunit) oxidoreductase protein YP_001898302.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: rso:RSc0771 putative transmembrane dehydrogenase (large subunit) oxidoreductase protein YP_001898303.1 KEGG: rso:RSc0772 putative oxidoreductase dehydrogenase (cytochrome c subunit) signal peptide protein YP_001898304.1 PFAM: AsmA family protein; KEGG: rso:RSc0773 probable transmembrane protein YP_001898305.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rso:RSc0774 probable transmembrane protein YP_001898306.1 PFAM: Thioredoxin domain; KEGG: bvi:Bcep1808_2659 thioredoxin YP_001898307.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: rso:RSc0777 hypothetical protein YP_001898308.1 PFAM: DSBA oxidoreductase; KEGG: rso:RSc0778 hypothetical protein YP_001898309.1 KEGG: rso:RSc0779 putative thioredoxin protein; TIGRFAM: thioredoxin; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; Thioredoxin domain; SMART: Tetratricopeptide domain protein YP_001898310.1 activates fatty acids by binding to coenzyme A YP_001898311.1 PFAM: Ankyrin; KEGG: rso:RSc0781 probable ankyrin repeat harboring signal peptide protein YP_001898312.1 PFAM: ChaC family protein; KEGG: rso:RSc0782 hypothetical protein YP_001898313.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: rso:RSc0784 probable FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)(immunophilin) protein YP_001898314.1 PFAM: YaeQ family protein; KEGG: rso:RSc0785 hypothetical protein YP_001898315.1 KEGG: rso:RSc0786 hypothetical protein YP_001898316.1 KEGG: rso:RSc0787 probable transmembrane protein YP_001898317.1 KEGG: rso:RSc0788 probable transmembrane protein YP_001898318.1 KEGG: rso:RSc0789 hypothetical protein YP_001898319.1 PFAM: YceI family protein; KEGG: rso:RSc0790 probable signal peptide protein YP_001898320.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001898321.1 PFAM: lipase chaperone; KEGG: rme:Rmet_3795 lipase chaperone YP_001898322.1 PFAM: alpha/beta hydrolase fold; Protein of unknown function DUF676 hydrolase domain protein; PGAP1 family protein; KEGG: bte:BTH_II0639 lipase YP_001898323.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: rso:RSc0793 probable transmembrane protein YP_001898324.1 PFAM: protein of unknown function DUF1468; KEGG: rso:RSc0794 probable transmembrane protein YP_001898325.1 KEGG: rso:RSc0795 probable transmembrane protein YP_001898326.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rso:RSc0796 putative transmembrane protein YP_001898327.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001898328.1 PFAM: purine nucleoside permease; KEGG: rso:RSc0798 putative purine nucleoside permease protein YP_001898329.1 PFAM: purine nucleoside permease; KEGG: rso:RSc0799 putative purine nucleoside permease protein YP_001898330.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RSc0800 putative ferrisiderophore receptor signal peptide protein YP_001898331.1 PFAM: band 7 protein; KEGG: rso:RSc0802 putative stomatin-like transmembrane protein YP_001898332.1 PFAM: protein of unknown function DUF107; KEGG: rso:RSc0803 probable transmembrane protein YP_001898333.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0804 probable transcription regulator protein YP_001898334.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: rso:RSc0805 hypothetical protein YP_001898335.1 PFAM: class II aldolase/adducin family protein; KEGG: rso:RSc0806 hypothetical protein YP_001898336.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown YP_001898337.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rso:RSc0808 probable low specificity L-threonine aldolase protein YP_001898338.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc0809 hypothetical protein YP_001898339.1 PFAM: SirA family protein; KEGG: rso:RSc0810 hypothetical protein YP_001898340.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc0814 probable transmembrane protein YP_001898341.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rme:Rmet_4989 endonuclease/exonuclease/phosphatase YP_001898342.1 KEGG: bpd:BURPS668_A0191 sensor protein EvgS; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; SMART: extracellular solute-binding protein family 3 YP_001898344.1 PFAM: Fimbrial protein; KEGG: pfo:Pfl_3042 fimbrial protein YP_001898345.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: pfo:Pfl_3043 pili assembly chaperone YP_001898346.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pfo:Pfl_3044 fimbrial biogenesis outer membrane usher protein YP_001898347.1 KEGG: pfo:Pfl_3037 fimbrial protein YP_001898348.1 PFAM: Fimbrial protein; KEGG: pfo:Pfl_3037 fimbrial protein YP_001898349.1 PFAM: protein of unknown function DUF748; KEGG: rso:RSc0896 putative transmembrane protein YP_001898350.1 KEGG: rso:RSc0897 probable hydrolase protein; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_001898351.1 Involved in ubiquinone biosynthesis YP_001898352.1 PFAM: 17 kDa surface antigen; KEGG: rso:RSc0899 probable outer membrane lipoprotein transmembrane YP_001898353.1 PFAM: OmpA/MotB domain protein; KEGG: rso:RSc0900 probable signal peptide protein YP_001898354.1 negatively supercoils closed circular double-stranded DNA YP_001898355.1 KEGG: rso:RSc0902 probable signal peptide protein YP_001898356.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_001898357.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: rso:RSc0904 probable bifunctional protein: chorismate mutase and prephenate dehydratase YP_001898358.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001898359.1 PFAM: Prephenate dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; KEGG: rso:RSc0906 putative prephenate dehydrogenase oxidoreductase protein YP_001898360.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001898361.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_001898362.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001898363.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_001898364.1 KEGG: rso:RSc0911 probable transmembrane protein YP_001898365.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: rso:RSc0912 hypothetical protein YP_001898366.1 KEGG: rso:RSc0913 probable UDP-glucose 6-dehydrogenase (UDG) oxidoreductase protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; Ketopantoate reductase ApbA/PanE domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_001898367.1 TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: rso:RSc0914 probable ADP-heptose synthase protein YP_001898368.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rso:RSc0915 probable ADP-L-glycero-D-manno-heptose-6-epimerase protein YP_001898369.1 KEGG: rso:RSc0916 putative ComEA-related signal peptide protein YP_001898370.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_001898371.1 TIGRFAM: lytic murein transglycosylase B; KEGG: rso:RSc0918 putative membrane-bound lytic murein transglycosylase B protein YP_001898372.1 PFAM: histone deacetylase superfamily; KEGG: rso:RSc0919 hypothetical protein YP_001898373.1 part of the metNIQ transport system for methionine YP_001898374.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc0921 probable transmembrane ABC transporter protein YP_001898375.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: rso:RSc0922 probable signal peptide protein YP_001898376.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: rso:RSc0923 probable electron transfer flavoprotein (beta-subunit) YP_001898377.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: rso:RSc0924 probable electron transfer flavoprotein (alpha-subunit) YP_001898378.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc0925 putative acyl-CoA dehydrogenase oxidoreductase protein YP_001898379.1 catalyzes the oxidative deamination of D-amino acids YP_001898380.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rso:RSc0927 probable leucine-responsive regulatory DNA-binding transcription regulator protein YP_001898381.1 KEGG: vei:Veis_2978 alkaline phosphatase YP_001898382.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rso:RSc0928 hypothetical protein YP_001898383.1 KEGG: rso:RSc0929 probable transmembrane protein YP_001898384.1 KEGG: rso:RSc0930 probable transmembrane protein YP_001898385.1 KEGG: rso:RSc0931 probable signal peptide protein YP_001898386.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001898387.1 Essential for efficient processing of 16S rRNA YP_001898388.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001898389.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001898390.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc0937 hypothetical protein YP_001898391.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: rso:RSc0938 adenosylcobinamide-phosphate synthase YP_001898392.1 KEGG: rso:RSc0939 hypothetical protein YP_001898393.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_001898394.1 PFAM: peptidase M48 Ste24p; KEGG: rso:RSc0941 probable integral membrane protease transmembrane protein YP_001898395.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_001898396.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis YP_001898397.1 PFAM: protein of unknown function DUF615; KEGG: rso:RSc0944 hypothetical protein YP_001898398.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: rso:RSc0945 putative PmbA protein (TldE protein) YP_001898399.1 PFAM: dihydrofolate reductase region; KEGG: rso:RSc0946 probable dihydrofolate reductase oxidoreductase protein YP_001898400.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_001898401.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rso:RSc0948 hypothetical protein YP_001898402.1 PFAM: Integral membrane protein TerC; KEGG: rso:RSc0949 probable transmembrane protein YP_001898403.1 KEGG: rso:RSc0950 hypothetical protein YP_001898404.1 PFAM: protein of unknown function DUF323; KEGG: rso:RSc0951 hypothetical protein YP_001898405.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: rso:RSc0952 putative ATP-dependent RNA helicase protein YP_001898406.1 KEGG: rso:RSc0953 probable transmembrane protein YP_001898407.1 KEGG: rso:RSc0971 hypothetical protein YP_001898408.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: rso:RSc0973 probable amino-acid-binding periplasmic (PBP) ABC transporter protein YP_001898409.1 KEGG: rso:RSc0974 probable transmembrane protein YP_001898410.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc0975 probable ATP-binding ABC transporter protein YP_001898411.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001898412.1 PFAM: Lytic transglycosylase catalytic; Transglycosylase domain protein; KEGG: rso:RSc0977 putative transglycosylase signal peptide protein YP_001898413.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001898414.1 PFAM: Chromate transporter; KEGG: rso:RSc0979 probable transmembrane protein YP_001898415.1 PFAM: Chromate transporter; KEGG: rso:RSc0980 probable transmembrane protein YP_001898416.1 PFAM: amino acid permease-associated region; KEGG: rme:Rmet_5046 amino acid permease-associated region YP_001898417.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reh:H16_A0694 MFS transporter, MHS family YP_001898418.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A2666 ABC-type transporter, ATPase and permease components: LipidE family YP_001898419.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: rso:RSc0981 putative L-lactate permease transmembrane protein YP_001898420.1 PFAM: Patatin; surface antigen variable number repeat protein; KEGG: rme:Rmet_0605 patatin YP_001898421.1 PFAM: transposase IS4 family protein; KEGG: bxe:Bxe_C0489 putative transposase IS4 YP_001898422.1 KEGG: rme:Rmet_0605 patatin YP_001898423.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bur:Bcep18194_A4767 periplasmic multidrug efflux lipoprotein precursor YP_001898424.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pae:PA2018 multidrug efflux protein YP_001898425.1 KEGG: bps:BPSS0716 hypothetical protein YP_001898426.1 PFAM: MASE1 domain protein; PAS fold-3 domain protein; KEGG: rso:RSc0982 probable transmembrane protein YP_001898427.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc0984 probable GST-related protein YP_001898428.1 PFAM: aminotransferase class I and II; KEGG: rso:RSc0985 probable aminotransferase protein YP_001898429.1 PFAM: Endoribonuclease L-PSP; KEGG: rso:RSc0986 hypothetical protein YP_001898430.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc0987 probable transmembrane protein YP_001898431.1 PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: rso:RSc0988 probable alanyl-tRNA synthetase related protein (fragment) YP_001898432.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rso:RSc0989 putative transcription regulator protein YP_001898433.1 molecular chaperone YP_001898434.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: reh:H16_A2653 G:T/U mismatch-specific DNA glycosylase YP_001898435.1 KEGG: mca:MCA1262 hypothetical protein YP_001898436.1 PFAM: extracellular solute-binding protein family 3; KEGG: bja:blr2224 ABC transporter amino acid-binding protein YP_001898437.1 PFAM: beta-lactamase domain protein; KEGG: pat:Patl_0876 beta-lactamase-like YP_001898438.1 KEGG: reh:H16_A2653 G:T/U mismatch-specific DNA glycosylase YP_001898439.1 KEGG: reh:H16_A2651 methyl-accepting chemotaxis protein YP_001898440.1 KEGG: rso:RS02104 hypothetical protein YP_001898441.1 PFAM: Tetratricopeptide TPR_4; KEGG: rso:RSc0994 probable transmembrane protein YP_001898442.1 KEGG: rso:RSc0995 hypothetical protein YP_001898443.1 KEGG: reu:Reut_A2665 hypothetical protein YP_001898444.1 KEGG: rso:RSc0996 hypothetical protein YP_001898445.1 KEGG: rso:RSc0997 hypothetical protein YP_001898446.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RSc0998 hypothetical protein YP_001898447.1 PFAM: cytochrome c class I; KEGG: rso:RSc0999 putative periplasmic cytochrome type-C oxidoreductase signal peptide protein YP_001898448.1 KEGG: rso:RSc1000 putative periplasmic cytochrome type-C oxidoreductase signal peptide protein YP_001898449.1 PFAM: Domain of unknown function DUF1841; KEGG: rso:RSc1001 hypothetical protein YP_001898450.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc1002 probable transmembrane protein YP_001898451.1 PFAM: peptidase S10 serine carboxypeptidase; KEGG: bur:Bcep18194_A3933 carboxypeptidase C (cathepsin A)-like YP_001898452.1 PFAM: nitroreductase; KEGG: rso:RSc1004 hypothetical protein YP_001898453.1 KEGG: rso:RSc1005 probable endonuclease III protein; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein YP_001898454.1 Involved in the electron transport chain YP_001898455.1 PFAM: regulatory protein TetR; KEGG: rso:RSc1007 probable transcription regulator protein YP_001898456.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: rso:RSc1008 probable poly[D(-)-3-hydroxybutyrate] depolymerase protein YP_001898457.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_001898458.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001898459.1 KEGG: rso:RSc1012 putative site-specific recombinase transmembrane protein YP_001898460.1 TIGRFAM: ribokinase; PFAM: PfkB domain protein; KEGG: rso:RSc1013 putative ribokinase protein YP_001898461.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSc1014 probable transcriptional regulatory DNA-binding repressor transcription regulator protein YP_001898462.1 PFAM: inner-membrane translocator; KEGG: rso:RSc1015 probable transmembrane ABC transporter protein YP_001898463.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc1016 probable ATP-binding ABC transporter protein YP_001898464.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSc1017 probable sugar-binding periplasmic (PBP) ABC transporter protein YP_001898465.1 TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: rso:RSc1018 hypothetical protein YP_001898466.1 TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rso:RSc1019 probable pyridoxal-phosphate-dependent aminotransferase (NifS protein) YP_001898467.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: rso:RSc1020 scaffold protein YP_001898468.1 TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rso:RSc1021 hypothetical protein YP_001898469.1 KEGG: rso:RSc1022 hypothetical protein YP_001898470.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_001898471.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_001898472.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: rso:RSc1025 probable ferredoxin [2Fe-2S] protein YP_001898473.1 TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: rso:RSc1026 hypothetical protein YP_001898474.1 PFAM: 17 kDa surface antigen; KEGG: rso:RSc1027 probable transmembrane protein YP_001898475.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_001898476.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc1029 short chain dehydrogenase YP_001898477.1 KEGG: bpm:BURPS1710b_3602 hypothetical protein YP_001898478.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_001898479.1 PFAM: protein of unknown function DUF162; KEGG: rso:RSc1032 putative transmembrane protein YP_001898480.1 KEGG: rso:RSc1033 probable transmembrane protein YP_001898481.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rso:RSc1034 2-hydroxyacid dehydrogenase YP_001898482.1 PFAM: protein of unknown function DUF195; KEGG: rso:RSc1035 hypothetical protein YP_001898483.1 KEGG: rso:RSc1036 probable transmembrane protein YP_001898484.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: rso:RSc1037 probable molybdopterin biosynthesis MoeA protein YP_001898485.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_001898486.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_001898487.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: rso:RSc1040 probable ribonuclease E (RNase E) protein YP_001898488.1 KEGG: rso:RSc1041 probable ribosomal large subunit pseudouridine synthase C protein; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001898489.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rso:RSc1042 putative phosphoglycolate phosphatase protein YP_001898490.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rso:RSc1043 hypothetical protein YP_001898491.1 PFAM: peptidase S49; KEGG: rso:RSc1044 putative protease transmembrane protein YP_001898492.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rso:RSc1045 probable transmembrane protein YP_001898493.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_001898494.1 PFAM: protein of unknown function DUF177; KEGG: rso:RSc1047 hypothetical protein YP_001898495.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001898496.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_001898497.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001898498.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: rso:RSc1051 acyl-carrier-protein S-malonyltransferase YP_001898499.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001898500.1 carries the fatty acid chain in fatty acid biosynthesis YP_001898501.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_001898502.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_001898503.1 PFAM: Anti sigma-E protein RseA family protein; KEGG: rso:RSc1056 putative transmembrane sigma-E factor negative regulatory transcription regulator protein YP_001898504.1 KEGG: rso:RSc1057 putative sigma-E factor regulatory (negative regulator) transcription regulator protein YP_001898505.1 KEGG: rso:RSc1058 probable periplasmic protease signal peptide protein; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001898506.1 PFAM: glutaredoxin 2; KEGG: rso:RSc1059 hypothetical protein YP_001898507.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001898508.1 KEGG: rso:RSc1061 probable signal peptidase I (SPase I) transmembrane protein; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_001898509.1 KEGG: rso:RSc1062 probable transmembrane protein YP_001898510.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_001898511.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_001898512.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_001898513.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_001898514.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_001898515.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_001898516.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001898517.1 KEGG: rso:RSc1070 hypothetical protein YP_001898518.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001898519.1 KEGG: rso:RSc1072 probable CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase transmembrane protein; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_001898520.1 PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_3830 major facilitator superfamily MFS_1 YP_001898521.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSc1073 probable two-component system response regulator transcription regulator protein YP_001898522.1 PFAM: Peptidoglycan-binding LysM; KEGG: rso:RSc1074 probable signal peptide protein YP_001898523.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE2 domain protein; PAS fold-4 domain protein; KEGG: rso:RSc1075 probable two-component system sensor histidine kinase transcription regulator protein YP_001898525.1 PFAM: transcriptional regulator domain protein; KEGG: rso:RSc1076 probable two-component system response regulator transcription regulator protein YP_001898526.1 KEGG: rso:RSc1077 probable transmembrane protein YP_001898527.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rso:RSc1078 probable transcriptional regulatory DNA-binding transcription regulator protein YP_001898528.1 KEGG: rso:RSc1079 probable glucarate dehydratase protein; TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein YP_001898529.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc1080 putative hexuronate transporter transmembrane protein YP_001898530.1 PFAM: glycoside hydrolase family 31; KEGG: rso:RSc1081 probable glucosidase protein YP_001898531.1 PFAM: porin Gram-negative type; KEGG: rso:RSc1082 probable porin transmembrane protein YP_001898532.1 PFAM: Aldose 1-epimerase; KEGG: rso:RSc1083 hypothetical protein YP_001898533.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc1110 probable transcriptional regulatory DNA-binding transcription regulator protein YP_001898534.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc1111 probable transmembrane protein YP_001898535.1 PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: rso:RSc1113 hypothetical protein YP_001898536.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rso:RSc1114 probable ferredoxin protein YP_001898538.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: rso:RSc1115 probable single-stranded-DNA-specific exonuclease protein YP_001898539.1 KEGG: rso:RSc1116 hypothetical signal peptide protein YP_001898540.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: rso:RSc1117 probable lipoprotein releasing system transmembrane YP_001898541.1 KEGG: rso:RSc1118 probable lipoprotein releasing system ATP-binding ABC transporter; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_001898542.1 PFAM: TatD-related deoxyribonuclease; KEGG: rso:RSc1119 probable deoxyribonuclease protein YP_001898543.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: rso:RSc1120 putative transporter DNA uptake transmembrane protein YP_001898544.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rso:RSc1121 hypothetical protein YP_001898545.1 PFAM: protein of unknown function DUF403; KEGG: rso:RSc1122 hypothetical protein YP_001898546.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: rso:RSc1123 hypothetical protein YP_001898547.1 KEGG: rso:RSc1124 hypothetical protein YP_001898548.1 KEGG: rso:RSc1125 putative hydrolase protein YP_001898549.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001898550.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_001898551.1 PFAM: protein of unknown function DUF1330; KEGG: rso:RSc1128 hypothetical protein YP_001898552.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001898553.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein YP_001898554.1 KEGG: rso:RSc1131 probable transmembrane protein YP_001898555.1 PFAM: Hsp33 protein; KEGG: rso:RSc1132 putative redox regulated molecular chaperone heat-shock-like protein YP_001898556.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: rso:RSc1133 hypothetical protein YP_001898557.1 PFAM: protein of unknown function DUF455; KEGG: rso:RSc1134 hypothetical protein YP_001898558.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc1135 putative hydrolase protein YP_001898559.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: rso:RSc1136 hypothetical protein YP_001898560.1 KEGG: rso:RSc1137 hypothetical protein YP_001898561.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rso:RSc1139 probable thioredoxin reductase oxidoreductase protein YP_001898562.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: rso:RSc1140 hypothetical protein YP_001898563.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: rso:RSc1141 hypothetical protein YP_001898564.1 PFAM: peptidase M50; KEGG: reu:Reut_A1102 peptidase M50 YP_001898565.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001898566.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rso:RSc1144 hypothetical protein YP_001898567.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001898568.1 PFAM: NlpBDapX family lipoprotein; KEGG: rso:RSc1146 probable transmembrane protein YP_001898569.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc1147 hypothetical protein YP_001898570.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: rso:RSc1148 hypothetical protein YP_001898571.1 KEGG: rso:RSc1149 probable FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) protein YP_001898572.1 KEGG: rso:RSc1150 probable transmembrane protein YP_001898573.1 This protein performs the mismatch recognition step during the DNA repair process YP_001898574.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc1152 probable transcription regulator protein YP_001898575.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: rso:RSc1155 probable methyl-accepting chemotaxis transducer transmembrane protein YP_001898576.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rso:RSc1156 probable methyl-accepting chemotaxis transducer transmembrane protein YP_001898577.1 PFAM: 3-alpha domain protein; MOSC domain containing protein; KEGG: rso:RSc1157 hypothetical protein YP_001898578.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_001898579.1 KEGG: reh:H16_A3384 hypothetical membrane associated protein YP_001898580.1 KEGG: reh:H16_A3383 hypothetical protein YP_001898581.1 PFAM: inositol monophosphatase; KEGG: rso:RSc1160 probable inositol monophosphatase (extragenic suppressor protein) YP_001898582.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rso:RSc1161 putative tRNA/rRNA methyltransferase protein YP_001898583.1 TIGRFAM: serine O-acetyltransferase; KEGG: rso:RSc1162 probable O-acetylserine synthase (serine acetyltransferase) protein YP_001898584.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine YP_001898585.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: rso:RSc1164 probable peptidyl-prolyl cis-trans isomerase B (PPIase B) (rotamase B)(CYPB protein) YP_001898586.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: rso:RSc1165 probable peptidyl-prolyl cis-trans isomerase A (PPIase A)(rotamase A)(CypH) signal peptide protein YP_001898587.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: rso:RSc1166 probable signal peptide protein YP_001898588.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001898589.1 PFAM: HhH-GPD family protein; KEGG: rso:RSc1168 hypothetical protein YP_001898590.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_001898591.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: rso:RSc1170 putative cell cycle protein YP_001898592.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_001898593.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_001898594.1 PFAM: extracellular solute-binding protein family 5; KEGG: rso:RSc1173 probable substrate-binding periplasmic (PBP) ABC transporter protein YP_001898595.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1174 probable transmembrane ABC transporter protein YP_001898596.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1175 probable transmembrane ABC transporter protein YP_001898597.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rso:RSc1176 probable ATP-binding ABC transporter protein YP_001898598.1 PFAM: NLP/P60 protein; KEGG: rso:RSc1177 putative transmembrane protein YP_001898599.1 KEGG: pol:Bpro_1225 ISPsy11, transposase OrfA YP_001898600.1 PFAM: Integrase catalytic region; KEGG: pol:Bpro_3089 integrase, catalytic region YP_001898601.1 PFAM: Patatin; KEGG: rso:RSc1178 probable lipoprotein transmembrane YP_001898602.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001898603.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rso:RSc1180 probable inner membrane transmembrane protein YP_001898604.1 KEGG: rso:RSc1181 probable inner membrane transmembrane protein YP_001898605.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_001898606.1 KEGG: rso:RSc1183 putative signal peptide protein YP_001898607.1 PFAM: protein of unknown function DUF980; KEGG: rso:RSc1184 hypothetical protein YP_001898608.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rso:RSc1185 probable transcription regulator protein YP_001898610.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: rso:RSc1186 putative sigma-54 interacting transcription regulator protein YP_001898611.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001898612.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rso:RSc1188 probable thioredoxin 1 (redox factor) protein YP_001898613.1 KEGG: rso:RSc1189 hypothetical protein YP_001898614.1 PFAM: UvrD/REP helicase; KEGG: rso:RSc1190 hypothetical protein YP_001898615.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_001898616.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc1192 hypothetical protein YP_001898617.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: amr:AM1_3889 antibiotic biosynthesis monooxygenase family protein YP_001898618.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001898619.1 PFAM: Carbohydrate-selective porin OprB; KEGG: rso:RSc1195 hypothetical protein YP_001898620.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc1196 probable DNA-binding transcriptional regulatory transcription regulator protein YP_001898621.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rso:RSc1197 hypothetical protein YP_001898622.1 PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; KEGG: rso:RSc1198 probable signal peptide protein YP_001898623.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc1199 probable ATP-binding ABC transporter protein YP_001898624.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1200 probable transmembrane permease ABC transporter protein YP_001898625.1 PFAM: regulatory protein TetR; KEGG: rso:RSc1201 probable transcription regulator protein YP_001898626.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rso:RSc1202 probable flavoprotein NADH-dependent oxidoreductase YP_001898627.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rso:RSc1203 probable oxidoreductase protein YP_001898628.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001898629.1 KEGG: rso:RSc1205 hypothetical protein; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_001898630.1 PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: rso:RSc1206 probable lipoprotein NlpD/LppB homolog YP_001898631.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses YP_001898632.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rso:RSc1208 hypothetical protein YP_001898633.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_001898634.1 PFAM: protein of unknown function UPF0005; KEGG: rso:RSc1210 hypothetical protein YP_001898635.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_001898636.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: rso:RSc1212 hypothetical protein YP_001898637.1 KEGG: rso:RSc1213 putative type 4 fimbrial biogenesis protein; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001898638.1 SMART: helix-turn-helix domain protein; KEGG: rso:RSc1214 probable transmembrane protein YP_001898639.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_001898640.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001898641.1 KEGG: rso:RSc1217 hypothetical protein YP_001898642.1 TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: rso:RSc1218 probable lipoprotein transmembrane YP_001898643.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001898644.1 Stimulates the elongation of poly(A) tails YP_001898645.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: rso:RSc1221 hypothetical protein YP_001898646.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: rso:RSc1222 hypothetical protein YP_001898647.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: rso:RSc1223 putative serine protease transmembrane protein YP_001898648.1 KEGG: rso:RSc1224 hypothetical protein YP_001898649.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_001898650.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001898651.1 PFAM: phosphoribosyltransferase; KEGG: rso:RSc1227 putative nucleotide phosphoribosyltransferase protein YP_001898652.1 KEGG: rso:RSc1228 probable exoribonuclease RNase R (VacB protein); TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein YP_001898653.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: rso:RSc1229 putative tRNA/rRNA methyltransferase protein YP_001898654.1 PFAM: Silent information regulator protein Sir2; KEGG: rso:RSc1230 hypothetical protein YP_001898655.1 KEGG: rso:RSc1231 transaldolase B; TIGRFAM: transaldolase; PFAM: Transaldolase YP_001898656.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_001898657.1 PFAM: Fe(II) trafficking protein YggX; KEGG: rso:RSc1235 hypothetical protein YP_001898658.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_001898659.1 KEGG: rso:RSc1251 probable ATP-dependent RNA helicase protein; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases YP_001898660.1 PFAM: cytochrome d1 heme region; KEGG: rso:RSc1252 hypothetical signal peptide protein YP_001898661.1 PFAM: polysaccharide deacetylase; KEGG: rso:RSc1253 probable lipoprotein signal peptide YP_001898662.1 PFAM: fatty acid hydroxylase; KEGG: rso:RSc1254 probable transmembrane protein YP_001898663.1 KEGG: rso:RSc1255 probable transmembrane protein YP_001898664.1 PFAM: molybdopterin binding domain; KEGG: rso:RSc1256 hypothetical protein YP_001898665.1 SMART: Rhodanese domain protein; KEGG: rso:RSc1257 hypothetical protein YP_001898666.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: rso:RSc1258 probable glutamine synthetase protein YP_001898667.1 KEGG: rso:RSc1259 hypothetical signal peptide protein YP_001898668.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RSc1260 probable nitrogen regulation (sensor protein kinase) transcription regulator YP_001898669.1 KEGG: rso:RSc1261 probable nitrogen assimilation regulatory response regulator transcription regulator protein; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001898670.1 KEGG: rso:RSc1262 hypothetical protein YP_001898671.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: rso:RSc1263 hypothetical protein YP_001898672.1 PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc1264 probable glycerol-3-phosphate-binding periplasmic lipoprotein signal peptide YP_001898673.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1265 probable sn-glycerol-3-phosphate transmembrane ABC transporter protein YP_001898674.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1266 probable sn-glycerol-3-phosphate transmembrane ABC transporter protein YP_001898675.1 part of the UgpABCE glycerol-3-phosphate uptake system YP_001898676.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate YP_001898677.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_001898678.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_001898679.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_001898680.1 PFAM: AFG1-family ATPase; KEGG: rso:RSc1272 hypothetical protein YP_001898681.1 KEGG: rso:RSc1273 putative lipoprotein YP_001898682.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rso:RSc1274 probable cation-transporting ATPase lipoprotein transmembrane YP_001898683.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: rso:RSc1275 probable signal peptide protein YP_001898684.1 CcoN; FixN YP_001898685.1 CcoO; FixO YP_001898686.1 KEGG: rso:RSc1278 hypothetical signal peptide protein YP_001898687.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: rso:RSc1279 probable cytochrome c oxidase (subunit III) transmembrane protein YP_001898688.1 TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: rso:RSc1280 probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein YP_001898689.1 KEGG: rso:RSc1281 probable lipoprotein transmembrane YP_001898690.1 KEGG: rso:RSc1282 probable transmembrane protein YP_001898691.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: rso:RSc1283 putative fumarate and nitrate reduction regulatory transcription regulator protein YP_001898692.1 KEGG: rso:RSc1284 probable transmembrane protein YP_001898693.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: rso:RSc1285 hypothetical protein YP_001898694.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rso:RSc1286 hypothetical protein YP_001898695.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_001898696.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001898697.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_001898698.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_001898699.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_001898700.1 KEGG: pol:Bpro_1225 ISPsy11, transposase OrfA YP_001898701.1 PFAM: Integrase catalytic region; KEGG: pol:Bpro_3089 integrase, catalytic region YP_001898702.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc1292 probable multidrug resistance B (translocase) transmembrane protein YP_001898703.1 PFAM: secretion protein HlyD family protein; KEGG: rso:RSc1293 probable multidrug resistance A (translocase) transmembrane protein YP_001898704.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RSc1294 putative outer membrane channel lipoprotein YP_001898705.1 PFAM: regulatory protein MarR; KEGG: rso:RSc1295 putative transcription regulator protein YP_001898706.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: rso:RSc1296 probable GTP-binding elongation factor protein YP_001898707.1 PFAM: Rhodanese domain protein; KEGG: pol:Bpro_2041 rhodanese-like YP_001898708.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB1539 putative LysR-family transcriptional regulator YP_001898709.1 PFAM: fatty acid hydroxylase; KEGG: reh:H16_A2293 C-5 sterol desaturase YP_001898710.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA YP_001898711.1 KEGG: bvi:Bcep1808_7770 hypothetical protein YP_001898713.1 PFAM: lysis protein; KEGG: rso:RSc1703 probable bacteriophage-related signal peptide protein YP_001898716.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: gvi:gll1228 probable short-chain dehydrogenase YP_001898717.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc0817 probable glutathione S-transferase protein YP_001898718.1 PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_001898719.1 KEGG: bmu:Bmul_5725 integrase catalytic region YP_001898720.1 SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: reu:Reut_C6348 hypothetical protein YP_001898721.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bmn:BMA10247_2163 hypothetical protein YP_001898722.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; KEGG: bte:BTH_I1343 8-amino-7-oxononanoate synthase YP_001898723.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_001898724.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: bte:BTH_I1341 putative type I polyketide synthase WcbR YP_001898725.1 PFAM: sulfatase; KEGG: bte:BTH_I1340 putative capsular polysaccharide biosynthesis protein WcbQ YP_001898726.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bte:BTH_I1339 oxidoreductase, short-chain dehydrogenase/reductase family YP_001898727.1 PFAM: Capsule polysaccharide biosynthesis protein; KEGG: bur:Bcep18194_A3870 capsule polysaccharide biosynthesis YP_001898728.1 KEGG: bte:BTH_I1337 WcbD YP_001898729.1 PFAM: ABC-2 type transporter; KEGG: bte:BTH_I1336 CtrC protein YP_001898730.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bte:BTH_I1335 BexA YP_001898731.1 KEGG: pna:Pnap_1393 ISXo7 transposase YP_001898732.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN4077 chloramphenicol acetyltransferase YP_001898733.1 PFAM: glycosyl transferase group 1; KEGG: bte:BTH_I1333 glycosyl transferase, group 1 family protein, putative YP_001898734.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: bte:BTH_I1332 GDP-6-deoxy-D-lyxo-4-hexulose reductase, putative YP_001898735.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: bch:Bcen2424_0880 GDP-mannose 4,6-dehydratase YP_001898736.1 PFAM: glycosyl transferase group 1; KEGG: mtp:Mthe_1073 glycosyl transferase, group 1 YP_001898737.1 TIGRFAM: methyltransferase FkbM family; KEGG: bte:BTH_I1328 methyltransferase, FkbM family domain protein YP_001898738.1 PFAM: polysaccharide export protein; KEGG: bch:Bcen2424_0771 polysaccharide export protein YP_001898739.1 PFAM: glycosyl transferase group 1; KEGG: bpm:BURPS1710b_3302 WcbB YP_001898740.1 PFAM: Capsule polysaccharide biosynthesis protein; KEGG: bte:BTH_I1325 WcbA YP_001898741.1 KEGG: bch:Bcen2424_0879 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein YP_001898742.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: rso:RSc1462 putative signal peptide protein YP_001898743.1 KEGG: mlo:mll1871 hypothetical protein YP_001898744.1 PFAM: transposase IS3/IS911 family protein; KEGG: bxe:Bxe_B1867 hypothetical protein YP_001898745.1 PFAM: IS66 Orf2 family protein; KEGG: psb:Psyr_0746 IS66 Orf2 like YP_001898746.1 PFAM: transposase IS66; KEGG: bxe:Bxe_B1865 transposase IS66 family YP_001898747.1 KEGG: azo:azo0336 PAS/PAC/GGDEF-domain containing protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001898748.1 PFAM: EAL domain protein; KEGG: pfo:Pfl_0264 putative diguanylate phosphodiesterase (EAL domain) YP_001898749.1 KEGG: bbt:BBta_3455 putative integrase/recombinase YP_001898750.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: rso:RSc1299 tRNA-dihydrouridine synthase A YP_001898751.1 KEGG: rso:RSc1301 hypothetical protein YP_001898752.1 TIGRFAM: dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rso:RSc1302 hypothetical protein YP_001898753.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: bxe:Bxe_C0481 hypothetical protein YP_001898754.1 KEGG: rso:RSc1303 hypothetical protein YP_001898755.1 Represses a number of genes involved in the response to DNA damage YP_001898756.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rso:RSc1305 probable ferredoxin--NADP reductase oxidoreductase protein YP_001898757.1 PFAM: Asparaginase/glutaminase; KEGG: rso:RSc1306 probable L-asparaginase II precursor signal peptide protein YP_001898758.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001898759.1 KEGG: rso:RSc1308 hypothetical protein YP_001898760.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001898761.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001898762.1 unwinds double stranded DNA YP_001898763.1 PFAM: protein of unknown function DUF47; KEGG: rso:RSc1312 hypothetical protein YP_001898764.1 PFAM: phosphate transporter; KEGG: rso:RSc1313 probable low-affinity phosphate transporter lipoprotein transmembrane YP_001898765.1 PFAM: NLP/P60 protein; KEGG: rso:RSc1314 probable lipoprotein transmembrane YP_001898766.1 KEGG: rso:RSc1315 putative signal peptide protein YP_001898767.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: rso:RSc1316 hypothetical protein YP_001898768.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RSc1317 probable bacterioferritin comigratory oxidoreductase protein YP_001898769.1 PFAM: polysaccharide deacetylase; KEGG: rso:RSc1318 hypothetical protein YP_001898770.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: rso:RSc1319 hypothetical protein YP_001898771.1 PFAM: formyl transferase domain protein; KEGG: rso:RSc1320 hypothetical protein YP_001898772.1 PFAM: glycosyl transferase family 2; KEGG: rso:RSc1321 putative polymixin resistance glycosyltransferase transmembrane protein YP_001898773.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rso:RSc1322 putative aminotransferase protein YP_001898774.1 PFAM: small multidrug resistance protein; KEGG: rso:RSc1323 putative small multidrug resistance transmembrane protein YP_001898775.1 PFAM: glycosyl transferase family 39; KEGG: rso:RSc1324 probable transmembrane protein YP_001898776.1 PFAM: protein of unknown function DUF498; KEGG: rso:RSc1325 hypothetical protein YP_001898777.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_001898778.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_001898779.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001898780.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: rso:RSc1329 hypothetical protein YP_001898781.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: rso:RSc1330 putative molybdopterin biosynthesis MoeA protein YP_001898782.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: rso:RSc1331 probable molybdopterin MPT converting factor (subunit 1) protein YP_001898783.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: rso:RSc1332 probable molybdopterin MPT converting factor (subunit 2) protein YP_001898784.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_001898785.1 KEGG: rso:RSc1334 probable D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane YP_001898786.1 KEGG: rso:RSc1335 probable ATP-dependent protease (heat shock protein); TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_001898787.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc1336 probable sulfate-binding precursor signal peptide protein YP_001898788.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rso:RSc1337 probable NADPH-dependent FMN reductase oxidoreductase protein YP_001898789.1 KEGG: reu:Reut_A1977 ABC transporter, substrate-binding protein, aliphatic sulphonates; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3 YP_001898790.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: rso:RSc1338 putative alkanesulfonates binding precursor signal peptide protein YP_001898791.1 catalyzes the release of sulfite from alkanesulfonates YP_001898792.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1340 putative aliphatic sulfonates transmembrane ABC transporter protein YP_001898793.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc1341 putative aliphatic sulfonates ATP-binding ABC transporter protein YP_001898794.1 PFAM: TOBE domain protein; KEGG: rso:RSc1342 putative molybdopterin-binding protein YP_001898795.1 PFAM: EAL domain protein; KEGG: rso:RSc1343 hypothetical protein YP_001898796.1 PFAM: protein of unknown function DUF1234; KEGG: rso:RSc1344 hypothetical protein YP_001898797.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1345 putative sulfate transport ABC transporter protein YP_001898798.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1346 putative sulfate transport ABC transporter protein YP_001898799.1 KEGG: rso:RSc1347 probable sulfate transport ATP-binding ABC transporter protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_001898800.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc1348 transcriptional regulator CysB-like protein YP_001898801.1 KEGG: rso:RSc1350 probable transmembrane protein YP_001898802.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: rso:RSc1351 putative transmembrane sensor histidine kinase transcription regulator protein YP_001898803.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: rso:RSc1352 probable two-component response regulator transcription regulator protein YP_001898804.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rso:RSc1353 acetolactate synthase 2 catalytic subunit YP_001898805.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_001898806.1 PFAM: AIG2 family protein; KEGG: rso:RSc1355 hypothetical protein YP_001898807.1 KEGG: rso:RSc3434 hypothetical protein YP_001898808.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: rso:RSc1358 isocitrate lyase YP_001898809.1 PFAM: UspA domain protein; KEGG: rso:RSc1359 hypothetical protein YP_001898810.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc1360 probable transcription regulator protein YP_001898811.1 KEGG: rso:RSc1362 putative 2-haloalkanoic acid dehalogenase protein; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase YP_001898812.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_001898813.1 PFAM: Domain of unknown function DUF1857; KEGG: rso:RSc1364 hypothetical protein YP_001898814.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc1365 putative multidrug resistance-like efflux transmembrane protein YP_001898815.1 PFAM: acyl-coA-binding protein ACBP; KEGG: rso:RSc1366 probable acyl-CoA-binding protein YP_001898816.1 PFAM: peptidase M22 glycoprotease; KEGG: rso:RSc1367 putative transmembrane protein YP_001898817.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSc1368 probable acyltransferase protein YP_001898818.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rso:RSc1369 putative DNA polymerase-related protein, bacteriophage-type YP_001898819.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc1370 hypothetical protein YP_001898820.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_001898821.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001898822.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein YP_001898823.1 KEGG: rso:RSc1374 hypothetical protein YP_001898824.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rso:RSc1375 putative racemase transmembrane protein YP_001898825.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc1376 probable ATP-binding ABC transporter protein YP_001898826.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: rso:RSc1377 hypothetical protein YP_001898827.1 PFAM: peptidase T2 asparaginase 2; KEGG: rso:RSc1378 probable L-asparaginase precursor protein YP_001898828.1 KEGG: rso:RSc1379 probable ATP-binding ABC transporter protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001898829.1 PFAM: extracellular solute-binding protein family 5; KEGG: rso:RSc1380 probable substrate-binding periplasmic (PBP) ABC transporter protein YP_001898830.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1381 probable transmembrane ABC transporter protein YP_001898831.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1382 probable transmembrane ABC transporter protein YP_001898832.1 PFAM: peptidase S58 DmpA; KEGG: rso:RSc1383 probable D-aminopeptidase protein YP_001898833.1 PFAM: peptidase M55 D-aminopeptidase; KEGG: rso:RSc1384 hypothetical protein YP_001898834.1 PFAM: chitin binding Peritrophin-A; KEGG: rso:RSc1385 probable lipoprotein transmembrane YP_001898835.1 KEGG: bch:Bcen2424_4457 metal-binding integral membrane protein-like protein YP_001898836.1 PFAM: protein of unknown function DUF1326; KEGG: bch:Bcen2424_4458 protein of unknown function DUF1326 YP_001898837.1 involved in methylation of ribosomal protein L3 YP_001898838.1 PFAM: adenylate cyclase; KEGG: rso:RSc1389 hypothetical protein YP_001898839.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_001898840.1 PFAM: arsenate reductase and related; KEGG: rso:RSc1391 hypothetical protein YP_001898841.1 KEGG: rso:RSc1392 putative transmembrane protein YP_001898842.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_001898843.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate YP_001898844.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc1395 probable transmembrane protein YP_001898845.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc1396 putative transmembrane protein YP_001898846.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: reu:Reut_A1888 chromosome segregation protein SMC YP_001898847.1 SMART: ZipA FtsZ-binding region; KEGG: rso:RSc1397 hypothetical protein YP_001898848.1 KEGG: rso:RSc1398 putative DNA ligase (polydeoxyribonucleotide synthase [NAD+]) protein; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase YP_001898849.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001898850.1 KEGG: rso:RSc1400 putative transmembrane protein YP_001898851.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rso:RSc1401 probable arginine/proline rich protein YP_001898852.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_001898853.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_001898854.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001898855.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_001898856.1 Catalyzes the phosphorylation of UMP to UDP YP_001898857.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001898858.1 KEGG: rso:RSc1408 probable undecaprenyl pyrophosphate synthetase protein; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_001898859.1 PFAM: phosphatidate cytidylyltransferase; KEGG: rso:RSc1409 probable phosphatidate cytidylyltransferase transmembrane protein YP_001898860.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001898861.1 KEGG: rso:RSc1411 probable transmembrane protein; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein YP_001898862.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rso:RSc1412 putative outer membrane signal peptide protein YP_001898863.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: rso:RSc1413 probable transmembrane protein YP_001898864.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_001898865.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_001898866.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_001898867.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_001898868.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001898869.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rso:RSc1419 putative tRNA/rRNA methyltransferase protein YP_001898870.1 KEGG: bur:Bcep18194_B0710 hypothetical protein YP_001898871.1 PFAM: alpha/beta hydrolase fold; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bmu:Bmul_3649 short-chain dehydrogenase/reductase SDR YP_001898872.1 KEGG: bte:BTH_II1809 FF domain protein YP_001898873.1 PFAM: protein of unknown function DUF299; KEGG: rso:RSc1420 hypothetical protein YP_001898874.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001898875.1 PFAM: protein of unknown function DUF107; KEGG: rso:RSc1422 probable transmembrane protein YP_001898876.1 PFAM: band 7 protein; KEGG: rso:RSc1423 putative transmembrane protein YP_001898877.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001898878.1 PFAM: cyclase/dehydrase; KEGG: rso:RSc1425 hypothetical protein YP_001898879.1 PFAM: protein of unknown function UPF0125; KEGG: rso:RSc1426 hypothetical protein YP_001898880.1 KEGG: rso:RSc1427 probable transmembrane protein YP_001898881.1 KEGG: rso:RSc1428 probable transmembrane protein YP_001898882.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_001898883.1 KEGG: rso:RSc1430 probable transmembrane protein YP_001898884.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001898885.1 KEGG: rso:RSc2704 hypothetical protein YP_001898886.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: reh:H16_B1929 cold shock protein, DNA-binding YP_001898887.1 KEGG: reu:Reut_A3203 hypothetical protein YP_001898888.1 KEGG: reh:H16_B0827 hypothetical protein YP_001898889.1 PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: bam:Bamb_2026 protein of unknown function DUF899, thioredoxin family protein YP_001898890.1 KEGG: reh:H16_B0829 hypothetical protein YP_001898891.1 PFAM: sodium:dicarboxylate symporter; KEGG: eca:ECA2410 putative sodium:dicarboxylate symporter YP_001898892.1 TIGRFAM: pca operon transcription factor PcaQ; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc1440 probable transcriptional regulatory DNA-binding transcription regulator protein YP_001898893.1 TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: rso:RSc1441 probable protocatechuate 3,4-dioxygenase (beta chain) oxidoreductase protein YP_001898894.1 KEGG: rso:RSc1442 probable protocatechuate 3,4-dioxygenase (alpha chain) oxidoreductase protein; TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase YP_001898895.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: rso:RSc1443 putative ligase protein YP_001898896.1 KEGG: rso:RSc1444 hypothetical protein YP_001898897.1 PFAM: beta-lactamase domain protein; KEGG: psb:Psyr_2218 beta-lactamase-like YP_001898898.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: yen:YE3335 LysR-family transcriptional regulatory protein YP_001898899.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc1445 probable transmembrane protein YP_001898900.1 KEGG: rso:RSc1448 hypothetical protein YP_001898901.1 PFAM: DSBA oxidoreductase; KEGG: mpt:Mpe_A0744 2-hydroxychromene-2-carboxylate isomerase family protein YP_001898902.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A0745 LysR family regulatory protein YP_001898903.1 PFAM: major facilitator superfamily MFS_1; KEGG: bmu:Bmul_1093 major facilitator superfamily MFS_1 YP_001898904.1 KEGG: rso:RSc1449 hypothetical protein YP_001898905.1 TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: rso:RSc1450 putative 6-pyruvoyl tetrahydrobiopterin synthase protein YP_001898906.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: rso:RSc1451 putative hydrolase protein YP_001898907.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine YP_001898908.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc1453 probable ATP-binding ABC transporter protein YP_001898909.1 KEGG: kpn:KPN_pKPN5p08190 hypothetical protein YP_001898910.1 KEGG: reu:Reut_A1290 acetyl-CoA hydrolase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase YP_001898911.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_1795 transcriptional regulator, LysR family YP_001898912.1 KEGG: rso:RSc1455 probable proline-rich protein YP_001898913.1 PFAM: Aldehyde Dehydrogenase_; KEGG: rso:RSc1456 putative betaine aldehyde dehydrogenase (BADH) oxidoreductase protein YP_001898914.1 PFAM: protein of unknown function DUF1289; KEGG: rso:RSc1457 hypothetical protein YP_001898915.1 PFAM: glycoside hydrolase 15-related; KEGG: rso:RSc1458 hypothetical protein YP_001898916.1 KEGG: rso:RSc1459 hypothetical protein YP_001898917.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_001898918.1 PFAM: Fimbrial protein; KEGG: pau:PA14_69760 putative fimbrial protein YP_001898919.1 KEGG: reu:Reut_B5305 hypothetical protein YP_001898920.1 PFAM: MgtC/SapB transporter; KEGG: rso:RSc1461 putative transporter transmembrane protein YP_001898921.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: rso:RSc1462 putative signal peptide protein YP_001898922.1 PFAM: protein of unknown function DUF182; KEGG: rso:RSc1463 hypothetical protein YP_001898923.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rso:RSc1464 probable transmembrane protein YP_001898924.1 PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: rso:RSc1465 hypothetical protein YP_001898925.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RSc1466 hypothetical protein YP_001898926.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: rso:RSc1467 probable oxidoreductase protein YP_001898927.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: rso:RSc1468 probable oxidoreductase protein YP_001898928.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rso:RSc1469 putative dehydrogenase oxidoreductase protein YP_001898929.1 KEGG: rso:RSc1470 hypothetical protein YP_001898930.1 PFAM: CreA family protein; KEGG: rso:RSc1471 putative CreA signal peptide protein YP_001898931.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc1472 probable transcription regulator protein YP_001898932.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc1473 putative multidrug resistance-like transmembrane protein YP_001898933.1 PFAM: glycosyl transferase family 51; KEGG: rso:RSc1476 probable transmembrane protein YP_001898934.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bvi:Bcep1808_4117 transcriptional regulator, LysR family YP_001898935.1 TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bmu:Bmul_4960 muconate and chloromuconate cycloisomerase YP_001898936.1 KEGG: bam:Bamb_6586 muconolactone delta-isomerase; TIGRFAM: muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase YP_001898937.1 TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: bmu:Bmul_3237 catechol 1,2-dioxygenase YP_001898938.1 PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: bch:Bcen2424_6524 Rieske (2Fe-2S) domain protein YP_001898939.1 KEGG: bch:Bcen2424_6525 2-chlorobenzoate 1,2-dioxygenase; TIGRFAM: benzoate 1,2-dioxygenase, small subunit; PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit YP_001898940.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: bmu:Bmul_3240 oxidoreductase FAD/NAD(P)-binding domain protein YP_001898941.1 catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol YP_001898942.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reh:H16_B1919 MFS transporter, AAHS family YP_001898943.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: bmu:Bmul_5243 benzoate transporter YP_001898945.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_001898946.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_001898947.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_001898948.1 KEGG: rso:RSc1480 probable lipoprotein transmembrane YP_001898949.1 KEGG: rso:RSc1481 probable transmembrane protein YP_001898950.1 PFAM: protein of unknown function DUF1653; KEGG: rso:RSc1482 hypothetical protein YP_001898951.1 KEGG: rso:RSc1483 hypothetical protein YP_001898952.1 PFAM: pyruvate carboxyltransferase; KEGG: aav:Aave_1652 pyruvate carboxyltransferase YP_001898953.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_5234 transcriptional regulator, LysR family YP_001898954.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_A1234 predicted acyl-CoA transferase/carnitine dehydratase YP_001898955.1 KEGG: ppf:Pput_5022 3-isopropylmalate dehydratase, large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein YP_001898956.1 KEGG: reh:H16_A1237 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein YP_001898957.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: acr:Acry_0452 major facilitator superfamily MFS_1 YP_001898958.1 KEGG: mms:mma_1788 uncharacterized conserved protein (phage related) YP_001898962.1 PFAM: replication initiation factor; KEGG: aav:Aave_2390 replication initiation factor YP_001898963.1 KEGG: neu:NE0889 hypothetical protein YP_001898965.1 KEGG: pae:PA0723 coat protein B of bacteriophage Pf1) YP_001898966.1 KEGG: mmu:239611 mucin 19 YP_001898968.1 PFAM: Zonular occludens toxin; KEGG: ajs:Ajs_0719 zonular occludens toxin YP_001898970.1 KEGG: rso:RS05555 hypothetical protein YP_001898971.1 PFAM: HMG-I and HMG-Y DNA-binding domain protein; KEGG: bte:BTH_I3270 hypothetical protein YP_001898972.1 PFAM: Zonular occludens toxin; KEGG: pmy:Pmen_2112 zonular occludens toxin YP_001898973.1 KEGG: bpd:BURPS668_3910 ABC-type Co2+ transport system, permease component YP_001898974.1 KEGG: cel:F59A6.3 F59A6.3 YP_001898975.1 KEGG: xft:PD0925 hypothetical protein YP_001898979.1 PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B2563 major facilitator superfamily (MFS_1) transporter YP_001898980.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bvi:Bcep1808_4035 helix-turn-helix-domain containing protein, AraC type YP_001898981.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_4505 transcriptional regulator, LysR family YP_001898982.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rme:Rmet_4506 major facilitator superfamily MFS_1 YP_001898983.1 KEGG: rme:Rmet_4507 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001898984.1 PFAM: Amidase; KEGG: pap:PSPA7_4912 amidase family protein YP_001898985.1 KEGG: mex:Mext_1680 LysR substrate-binding YP_001898986.1 KEGG: sal:Sala_0365 (acyl-carrier protein) phosphodiesterase YP_001898987.1 PFAM: metallophosphoesterase; KEGG: rso:RSc1795 hypothetical protein YP_001898988.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rso:RSc1794 probable ATP-binding ABC transporter protein YP_001898989.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1793 probable permease transmembrane ABC transporter protein YP_001898990.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1792 probable transport system permease transmembrane ABC transporter protein YP_001898991.1 PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc1791 probable solute-binding periplasmic (PBP) ABC transporter protein YP_001898992.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSc1790 probable transcription regulator protein YP_001898993.1 PFAM: protein of unknown function DUF323; KEGG: rso:RSc1789 hypothetical protein YP_001898994.1 PFAM: Ankyrin; KEGG: rso:RSc1788 probable ankyrin repeat harboring signal peptide protein YP_001898995.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: rso:RSc1787 hypothetical protein YP_001898996.1 PFAM: type IV pilus assembly PilZ; KEGG: rso:RSc1786 putative type 4 fimbrial biogenesis protein YP_001898997.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_001898998.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_001898999.1 PFAM: aminodeoxychorismate lyase; KEGG: rso:RSc1783 hypothetical protein YP_001899000.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: rso:RSc1782 hypothetical protein YP_001899001.1 KEGG: rso:RSc1781 hypothetical protein YP_001899002.1 PFAM: protein of unknown function DUF833; KEGG: rso:RSc1780 putative signal peptide protein YP_001899003.1 PFAM: fatty acid hydroxylase; KEGG: reu:Reut_A2772 putative sterol desaturase YP_001899004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_A2771 regulatory protein, LysR:LysR, substrate-binding YP_001899005.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSc1774 hypothetical protein YP_001899006.1 PFAM: thioesterase superfamily protein; KEGG: rso:RSc1773 putative thioesterase protein YP_001899007.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rso:RSc1772 probable esterase/lipase protein YP_001899008.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: rso:RSc1771 probable NAD-dependent 4-hydroxybutyrate dehydrogenase oxidoreductase protein YP_001899009.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc1770 probable hydrolase protein YP_001899010.1 probable dehydrogenase YP_001899011.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc1768 putative glutathione S-transferase-related protein YP_001899012.1 PFAM: class II aldolase/adducin family protein; KEGG: rme:Rmet_1848 hypothetical protein YP_001899013.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: rso:RSc1766 probable NADP-dependent oxidoreductase oxidoreductase protein YP_001899014.1 PFAM: beta-lactamase; KEGG: rso:RSc1765 probable 6-aminohexanoate-dimer hydrolase lipoprotein YP_001899015.1 PFAM: thioesterase superfamily protein; KEGG: rso:RSc1764 hypothetical protein YP_001899016.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate YP_001899017.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rso:RSc1762 probable acyl-CoA dehydrogenase oxidoreductase protein YP_001899018.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001899019.1 PFAM: isochorismatase hydrolase; KEGG: rso:RSc1760 probable bifunctional protein: pyrazinamidase and nicotinamidase hydrolase (nicotine deamidase) YP_001899020.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: rso:RSc1759 probable trifunctional: enoyl-CoA hydratase and delta3-cis-delta2-trans-enoyl-CoA isomerase and 3-hydroxyacyl-CoA dehydrogenase oxidoreductase protein YP_001899021.1 PFAM: amino acid permease-associated region; KEGG: rso:RSc1758 probable lysine-specific permease transmembrane protein YP_001899022.1 PFAM: amino acid permease-associated region; KEGG: rso:RSc1757 probable lysine-specific permease transmembrane protein YP_001899023.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc1754 probable amino-acid ATP-binding ABC transporter protein YP_001899024.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc1753 probable amino-acid ATP-binding ABC transporter protein YP_001899025.1 PFAM: inner-membrane translocator; KEGG: rso:RSc1752 probable amino acid transport system permease lipoprotein transmembrane YP_001899026.1 PFAM: inner-membrane translocator; KEGG: rso:RSc1751 putative amino acid transmembrane transmembrane protein YP_001899027.1 KEGG: rso:RSc1750 probable Leu/Ile/Val-binding precursor signal peptide protein YP_001899028.1 activates fatty acids by binding to coenzyme A YP_001899029.1 PFAM: protein of unknown function UPF0061; KEGG: rso:RSc1748 hypothetical protein YP_001899030.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_001899031.1 Involved in cell division; probably involved in intracellular septation YP_001899032.1 PFAM: BolA family protein; KEGG: rso:RSc1745 hypothetical protein YP_001899033.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rso:RSc1744 putative isomerase rotamase signal peptide protein YP_001899034.1 PFAM: protein of unknown function DUF534; KEGG: rso:RSc1740 hypothetical signal peptide protein YP_001899035.1 PFAM: inner-membrane translocator; KEGG: rso:RSc1739 putative transmembrane ABC transporter protein YP_001899036.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc1738 probable ATP-binding ABC transporter protein YP_001899037.1 KEGG: bur:Bcep18194_B3003 hypothetical protein YP_001899038.1 KEGG: rso:RSc1734 probable ATP-binding ABC transporter protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_001899039.1 PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc1733 putative lipoprotein signal peptide YP_001899040.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1732 probable transport system permease transmembrane protein YP_001899041.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1731 probable transmembrane ABC transporter protein YP_001899042.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rso:RSc1730 probable dehydrogenase/reductase oxidoreductase protein YP_001899043.1 PFAM: transposase IS4 family protein; KEGG: bxe:Bxe_C0489 putative transposase IS4 YP_001899044.1 KEGG: rso:RSc1730 probable dehydrogenase/reductase oxidoreductase protein YP_001899045.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc1729 probable transcription regulator protein YP_001899046.1 PFAM: extracellular solute-binding protein family 3; KEGG: reu:Reut_A1127 extracellular solute-binding protein, family 3 YP_001899047.1 PFAM: transposase Tn3 family protein; KEGG: pap:PSPA7_5340 transposase YP_001899048.1 PFAM: Resolvase domain; KEGG: pap:PSPA7_5339 DNA-invertase YP_001899049.1 KEGG: rme:Rmet_6342 hypothetical protein YP_001899050.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: rme:Rmet_6341 addiction module toxin, RelE/StbE YP_001899051.1 KEGG: rme:Rmet_6340 hypothetical protein YP_001899052.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: rme:Rmet_6339 cupin 2, conserved barrel YP_001899053.1 PFAM: copper resistance B precursor; KEGG: pae:PA2064 copper resistance protein B precursor YP_001899054.1 KEGG: rme:Rmet_5976 hypothetical protein YP_001899056.1 PFAM: transposase IS66; KEGG: bxe:Bxe_B1865 transposase IS66 family YP_001899057.1 PFAM: IS66 Orf2 family protein; KEGG: ajs:Ajs_2917 IS66 Orf2 family protein YP_001899058.1 KEGG: bxe:Bxe_B1867 hypothetical protein YP_001899060.1 PFAM: GtrA family protein; KEGG: rme:Rmet_6129 GtrA-like protein YP_001899061.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rme:Rmet_6131 methyltransferase type 11 YP_001899062.1 KEGG: pna:Pnap_1393 ISXo7 transposase YP_001899063.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_A1608 regulatory protein, LysR:LysR, substrate-binding YP_001899064.1 KEGG: bmu:Bmul_5776 hypothetical protein YP_001899065.1 KEGG: bmu:Bmul_5777 hypothetical protein YP_001899066.1 KEGG: bmu:Bmul_5778 integrase catalytic region YP_001899067.1 KEGG: bmu:Bmul_5779 hypothetical protein YP_001899068.1 KEGG: pna:Pnap_4761 mucin-associated surface protein YP_001899069.1 KEGG: mmr:Mmar10_3077 GumN family protein YP_001899071.1 PFAM: histone family protein DNA-binding protein; KEGG: reu:Reut_C5992 histone-like bacterial DNA-binding protein YP_001899073.1 KEGG: atc:AGR_pTi_214 hypothetical protein YP_001899074.1 PFAM: restriction endonuclease; KEGG: gme:Gmet_1797 DNA topoisomerase I:restriction endonuclease YP_001899077.1 KEGG: vvy:VVA0688 hypothetical protein YP_001899078.1 PFAM: integrase family protein; KEGG: rme:Rmet_6086 phage integrase YP_001899079.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bch:Bcen2424_6193 cobyrinic acid a,c-diamide synthase YP_001899080.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: bam:Bamb_6001 ParB-like partition proteins YP_001899081.1 KEGG: bmu:Bmul_6162 hypothetical protein YP_001899082.1 PFAM: UvrD/REP helicase; KEGG: rme:Rmet_6314 UvrD/REP helicase YP_001899083.1 KEGG: bmu:Bmul_5587 hypothetical protein YP_001899084.1 PFAM: flagellar transcriptional activator; KEGG: rso:RSp1413 transcriptional activator FlhD YP_001899085.1 KEGG: rme:Rmet_6313 hypothetical protein YP_001899086.1 KEGG: rme:Rmet_6312 hypothetical protein YP_001899087.1 KEGG: bmu:Bmul_5615 hypothetical protein YP_001899088.1 KEGG: rme:Rmet_6310 hypothetical protein YP_001899089.1 KEGG: rme:Rmet_6309 hypothetical protein YP_001899090.1 KEGG: rme:Rmet_6308 hypothetical protein YP_001899091.1 KEGG: rme:Rmet_6307 hypothetical protein YP_001899092.1 KEGG: rme:Rmet_6306 hypothetical protein YP_001899093.1 KEGG: rme:Rmet_6305 type IV secretory pathway VirB4 components-like protein YP_001899094.1 KEGG: rme:Rmet_6304 hypothetical protein YP_001899095.1 KEGG: bmu:Bmul_5607 hypothetical protein YP_001899096.1 PFAM: type II secretion system protein E; KEGG: rme:Rmet_6302 type II secretion system protein E YP_001899097.1 KEGG: rme:Rmet_6301 hypothetical protein YP_001899098.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rme:Rmet_6300 conjugal transfer protein TrbG/VirB9/CagX YP_001899099.1 PFAM: conjugation TrbI family protein; KEGG: rme:Rmet_6299 conjugation TrbI-like protein YP_001899100.1 KEGG: rme:Rmet_6298 hypothetical protein YP_001899101.1 KEGG: rme:Rmet_6297 hypothetical protein YP_001899102.1 PFAM: Lytic transglycosylase catalytic; KEGG: bmu:Bmul_5550 lytic transglycosylase catalytic YP_001899103.1 KEGG: bvi:Bcep1808_7062 hypothetical protein YP_001899104.1 KEGG: gox:GOX2625 PilN YP_001899105.1 KEGG: azc:AZC_3265 putative transcriptional regulatory protein YP_001899106.1 KEGG: bam:Bamb_5879 PilO; putative type IV pilus biosynthesis protein YP_001899107.1 PFAM: type II secretion system protein E; KEGG: gox:GOX2628 nucleotide binding protein PilQ YP_001899108.1 PFAM: type II secretion system protein; KEGG: bmn:BMA10247_A0662 type IV pilus biogenesis protein YP_001899109.1 KEGG: pol:Bpro_5446 putative type IV pilus biogenesis protein YP_001899110.1 KEGG: xau:Xaut_1869 FAD linked oxidase domain protein YP_001899111.1 KEGG: ypi:YpsIP31758_B0021 type IV pilus biogenesis protein PilV YP_001899112.1 KEGG: bvi:Bcep1808_7070 hypothetical protein YP_001899113.1 PFAM: SCP-like extracellular; KEGG: bvi:Bcep1808_7071 allergen V5/TPX-1 related YP_001899116.1 KEGG: rme:Rmet_6284 hypothetical protein YP_001899117.1 KEGG: rme:Rmet_6283 hypothetical protein YP_001899118.1 KEGG: rme:Rmet_6281 hypothetical protein YP_001899119.1 KEGG: rme:Rmet_6280 hypothetical protein YP_001899120.1 KEGG: rme:Rmet_6279 hypothetical protein YP_001899121.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_001899122.1 PFAM: P4 alpha zinc-binding domain protein; KEGG: rme:Rmet_6277 phage P4 alpha, zinc-binding YP_001899123.1 KEGG: rme:Rmet_6276 hypothetical protein YP_001899125.1 KEGG: sco:SCO4049 antibiotic binding protein YP_001899126.1 KEGG: rme:Rmet_6275 hypothetical protein YP_001899128.1 PFAM: helix-turn-helix Fis-type; KEGG: rme:Rmet_6273 helix-turn-helix, fis-type YP_001899131.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: rme:Rmet_6268 DNA/RNA non-specific endonuclease YP_001899132.1 KEGG: rme:Rmet_6267 hypothetical protein YP_001899133.1 KEGG: rme:Rmet_6266 hypothetical protein YP_001899134.1 KEGG: rso:RSc1656 hypothetical protein YP_001899138.1 KEGG: amr:AM1_F0154 hypothetical protein YP_001899139.1 KEGG: rme:Rmet_6249 hypothetical protein YP_001899140.1 KEGG: rme:Rmet_6248 putative DNA helicase YP_001899141.1 KEGG: rme:Rmet_6247 hypothetical protein YP_001899142.1 KEGG: rme:Rmet_6246 hypothetical protein YP_001899143.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: bch:Bcen2424_5220 AAA ATPase, central domain protein YP_001899145.1 KEGG: plu:plu3523 hypothetical protein YP_001899146.1 KEGG: plu:plu3522 hypothetical protein YP_001899147.1 KEGG: plu:plu3521 hypothetical protein YP_001899148.1 KEGG: pca:Pcar_0116 hypothetical protein YP_001899149.1 KEGG: tcx:Tcr_1645 hypothetical protein YP_001899150.1 PFAM: TniB family protein; KEGG: asa:ASA_1044 TniB YP_001899151.1 KEGG: pca:Pcar_0125 hypothetical protein YP_001899152.1 PFAM: TnsA endonuclease; KEGG: rfr:Rfer_3933 hypothetical protein YP_001899153.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSp1044 probable cobalt-nickel-resistance system transmembrane protein YP_001899154.1 PFAM: protein of unknown function DUF156; KEGG: bte:BTH_II0391 uncharacterized BCR, COG1937 family YP_001899155.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bvi:Bcep1808_3872 cation diffusion facilitator family transporter YP_001899156.1 KEGG: nha:Nham_4399 hypothetical protein YP_001899157.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: reu:Reut_B5170 cation efflux protein YP_001899158.1 PFAM: natural resistance-associated macrophage protein; KEGG: rso:RSp0027 putative manganese transport transmembrane protein YP_001899159.1 KEGG: rso:RS02001 hypothetical protein YP_001899160.1 PFAM: Carbohydrate-selective porin OprB; KEGG: rme:Rmet_0352 carbohydrate-selective porin OprB YP_001899161.1 KEGG: rme:Rmet_5647 UspA YP_001899163.1 KEGG: bur:Bcep18194_B2571 amino acid transporter-like YP_001899165.1 KEGG: rme:Rmet_6243 hypothetical protein YP_001899166.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_6241 ParB-like partition proteins YP_001899167.1 KEGG: rme:Rmet_6240 hypothetical protein YP_001899168.1 KEGG: bvi:Bcep1808_7095 hypothetical protein YP_001899170.1 KEGG: rme:Rmet_6238 hypothetical protein YP_001899171.1 KEGG: rme:Rmet_6237 hypothetical protein YP_001899172.1 KEGG: rme:Rmet_6236 hypothetical protein YP_001899173.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rme:Rmet_6235 UBA/ThiF-type NAD/FAD binding fold YP_001899175.1 PFAM: band 7 protein; KEGG: fps:FP0707 hypothetical protein YP_001899182.1 KEGG: rme:Rmet_6233 putative outer membrane lipoprotein transmembrane YP_001899184.1 KEGG: bvi:Bcep1808_6920 hypothetical protein YP_001899185.1 KEGG: rme:Rmet_6232 hypothetical protein YP_001899186.1 KEGG: rme:Rmet_6231 hypothetical protein YP_001899188.1 KEGG: bch:Bcen2424_6938 hypothetical protein YP_001899189.1 KEGG: rme:Rmet_6230 hypothetical protein YP_001899190.1 KEGG: rme:Rmet_6228 hypothetical protein YP_001899191.1 SMART: AAA ATPase; KEGG: bmu:Bmul_5603 ATPase YP_001899192.1 KEGG: bmu:Bmul_5604 hypothetical protein YP_001899193.1 KEGG: bmu:Bmul_5605 hypothetical protein YP_001899194.1 KEGG: reu:Reut_B3485 hypothetical protein YP_001899197.1 KEGG: rpe:RPE_3244 hypothetical protein YP_001899198.1 KEGG: bvi:Bcep1808_6926 hypothetical protein YP_001899200.1 KEGG: rme:Rmet_6225 protein of unknown function DUF583 YP_001899201.1 KEGG: scl:sce8069 hypothetical protein YP_001899202.1 KEGG: rme:Rmet_6223 hypothetical protein YP_001899203.1 KEGG: rme:Rmet_6222 hypothetical protein YP_001899204.1 KEGG: rme:Rmet_6221 hypothetical protein YP_001899205.1 KEGG: rme:Rmet_6220 DNA repair exonuclease-like protein YP_001899206.1 KEGG: rme:Rmet_6219 hypothetical protein YP_001899207.1 KEGG: rme:Rmet_6218 putative ATPase involved in DNA repair YP_001899208.1 KEGG: rme:Rmet_6217 hypothetical protein YP_001899209.1 PFAM: transposase Tn3 family protein; KEGG: pol:Bpro_2470 transposase Tn3 YP_001899210.1 PFAM: integrase family protein; KEGG: mms:mma_1757 cointegrate resolution protein S YP_001899211.1 PFAM: cytochrome c class I; iron permease FTR1; KEGG: rme:Rmet_5945 iron permease FTR1 YP_001899212.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: rme:Rmet_5946 transcriptional regulator, MerR family YP_001899213.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ajs:Ajs_1242 heavy metal translocating P-type ATPase YP_001899214.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: shn:Shewana3_4320 lipoprotein signal peptidase YP_001899215.1 KEGG: rso:RS05404 hypothetical signal peptide protein YP_001899216.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rso:RS05405 probable cation efflux system transmembrane protein YP_001899217.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: reh:H16_A2186 cobalt-zinc-cadmium resistance membrane-fusion protein YP_001899218.1 KEGG: rme:Rmet_6134 outer membrane efflux protein YP_001899219.1 KEGG: rso:RS05408 hypothetical protein YP_001899220.1 KEGG: reh:H16_B1270 hypothetical membrane associated protein YP_001899221.1 KEGG: bch:Bcen2424_3411 hypothetical protein YP_001899222.1 KEGG: bvi:Bcep1808_7265 hypothetical protein YP_001899223.1 KEGG: reu:Reut_C6196 ATPase, E1-E2 type:copper-translocating P-type ATPase:heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein YP_001899225.1 KEGG: bvi:Bcep1808_7285 YHS domain protein YP_001899226.1 KEGG: reh:H16_A1977 hypothetical protein YP_001899227.1 KEGG: reh:H16_A1978 hypothetical protein YP_001899228.1 KEGG: ajs:Ajs_1470 hypothetical protein YP_001899229.1 KEGG: dar:Daro_2269 hypothetical protein YP_001899230.1 KEGG: smd:Smed_0214 hypothetical protein YP_001899231.1 KEGG: vpa:VPA0557 hypothetical protein YP_001899232.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_2507 ABC transporter related YP_001899233.1 PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_2373 ABC-type transport system, permease component YP_001899234.1 PFAM: sodium/calcium exchanger membrane region; KEGG: cvi:CV_2442 probable cation antiporter YP_001899235.1 PFAM: Carbohydrate-selective porin OprB; KEGG: rme:Rmet_0352 carbohydrate-selective porin OprB YP_001899236.1 KEGG: rso:RS02001 hypothetical protein YP_001899237.1 PFAM: natural resistance-associated macrophage protein; KEGG: rso:RSp0027 putative manganese transport transmembrane protein YP_001899239.1 KEGG: pnu:Pnuc_1326 hypothetical protein YP_001899240.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rme:Rmet_5321 RND efflux system, outer membrane lipoprotein, NodT YP_001899241.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rme:Rmet_5320 secretion protein HlyD YP_001899242.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rme:Rmet_5319 heavy metal efflux pump CzcA YP_001899243.1 PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: rme:Rmet_5323 two component transcriptional regulator, LuxR family YP_001899244.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rme:Rmet_5322 periplasmic sensor signal transduction histidine kinase YP_001899245.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: reu:Reut_B5170 cation efflux protein YP_001899246.1 KEGG: nha:Nham_4399 hypothetical protein YP_001899247.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bte:BTH_II0390 cation efflux system protein YP_001899248.1 PFAM: protein of unknown function DUF156; KEGG: bte:BTH_II0391 uncharacterized BCR, COG1937 family YP_001899249.1 PFAM: TnsA endonuclease; KEGG: pca:Pcar_0126 hypothetical protein YP_001899250.1 KEGG: asa:ASA_1043 TniA transposase YP_001899251.1 PFAM: TniB family protein; KEGG: asa:ASA_1044 TniB YP_001899252.1 KEGG: tcx:Tcr_1645 hypothetical protein YP_001899253.1 KEGG: pca:Pcar_0116 hypothetical protein YP_001899254.1 KEGG: xac:XAC2421 hypothetical protein YP_001899255.1 KEGG: mla:Mlab_1682 hypothetical protein YP_001899257.1 KEGG: tth:TTC1428 hypothetical protein YP_001899258.1 PFAM: metallophosphoesterase; KEGG: mms:mma_3037 metallophosphoesterase YP_001899260.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: bch:Bcen2424_5220 AAA ATPase, central domain protein YP_001899261.1 PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_2373 ABC-type transport system, permease component YP_001899262.1 KEGG: vpa:VPA0561 hypothetical protein YP_001899263.1 PFAM: ABC-1 domain protein; KEGG: bvi:Bcep1808_7271 ABC-1 domain protein YP_001899264.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP YP_001899265.1 PFAM: LemA family protein; KEGG: reu:Reut_C6198 LemA YP_001899266.1 PFAM: protein of unknown function DUF477; KEGG: reh:H16_A2010 beta-propeller domains of methanol dehydrogenase-type (homolog) YP_001899267.1 PFAM: protein of unknown function DUF477; KEGG: reu:Reut_C6200 protein of unknown function DUF477 YP_001899268.1 KEGG: ajs:Ajs_1493 hypothetical protein YP_001899269.1 KEGG: rme:Rmet_0477 hypothetical protein YP_001899270.1 PFAM: protein of unknown function DUF344; KEGG: ajs:Ajs_2697 protein of unknown function DUF344 YP_001899271.1 KEGG: ajs:Ajs_2687 hypothetical protein YP_001899272.1 KEGG: reu:Reut_C6194 peptidase M41, FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase YP_001899273.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever YP_001899274.1 KEGG: pna:Pnap_4536 hypothetical protein YP_001899275.1 PFAM: Heavy metal transport/detoxification protein; KEGG: ajs:Ajs_1492 heavy metal transport/detoxification protein YP_001899276.1 KEGG: xau:Xaut_4588 hypothetical protein YP_001899277.1 KEGG: xau:Xaut_4887 isoprenylcysteine carboxyl methyltransferase YP_001899278.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: ajs:Ajs_2691 beta-lactamase domain protein YP_001899279.1 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine YP_001899280.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate YP_001899281.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_2676 cyclopropane-fatty-acyl-phospholipid synthase YP_001899282.1 KEGG: pna:Pnap_4542 hypothetical protein YP_001899283.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: xau:Xaut_4847 copper-translocating P-type ATPase YP_001899284.1 PFAM: major facilitator superfamily MFS_1; KEGG: xau:Xaut_4848 major facilitator superfamily MFS_1 YP_001899285.1 PFAM: protein of unknown function DUF326; KEGG: azo:azo1773 hypothetical protein YP_001899286.1 PFAM: copper resistance protein CopC; KEGG: reh:H16_B2183 copper resistance protein C YP_001899287.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rso:RSp0654 probable two component sensor histidine kinase transcription regulator protein YP_001899288.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSp0655 probable two component response regulator transcription regulator protein YP_001899289.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: rso:RSp0656 probable copper resistance transmembrane protein YP_001899290.1 PFAM: copper resistance B precursor; KEGG: rso:RSp0657 probable copper resistance protein B YP_001899291.1 PFAM: copper resistance protein CopC; KEGG: rme:Rmet_6114 copper resistance protein CopC YP_001899292.1 PFAM: copper resistance D domain protein; KEGG: rso:RSp0659 probable copper resistance D transmembrane protein YP_001899293.1 PFAM: protein of unknown function DUF411; KEGG: bps:BPSS2003 conserved periplasmic protein YP_001899294.1 KEGG: rme:Rmet_6120 hypothetical protein YP_001899295.1 KEGG: rme:Rmet_6216 hypothetical protein YP_001899297.1 KEGG: rme:Rmet_5183 hypothetical protein YP_001899298.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: rso:RSc2364 hypothetical protein YP_001899299.1 PFAM: integrase family protein; KEGG: reu:Reut_C5993 phage integrase YP_001899300.1 SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: reu:Reut_B5596 histone-like nucleoid-structuring protein H-NS YP_001899301.1 PFAM: transposase Tn3 family protein; KEGG: bvi:Bcep1808_7171 transposase Tn3 family protein YP_001899302.1 KEGG: bvi:Bcep1808_7205 TnpC YP_001899303.1 PFAM: integrase family protein; KEGG: bmu:Bmul_5789 integrase family protein YP_001899304.1 KEGG: kpn:KPN_01713 hypothetical protein YP_001899305.1 PFAM: plasmid stabilization system; KEGG: sfl:CP0218 hypothetical protein YP_001899306.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: smd:Smed_6450 transcriptional regulator, CopG family YP_001899307.1 KEGG: gvi:gll4023 unknown protein YP_001899308.1 KEGG: reu:Reut_A1626 hypothetical protein YP_001899310.1 PFAM: integrase family protein; KEGG: reh:H16_A1678 phage integrase family protein YP_001899311.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rme:Rmet_6110 heavy metal sensor signal transduction histidine kinase YP_001899312.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: reh:H16_B2186 response regulator of copper response,OmpR-family YP_001899313.1 KEGG: rme:Rmet_6112 copper-resistance protein CopA YP_001899314.1 PFAM: protein of unknown function DUF326; KEGG: azo:azo1773 hypothetical protein YP_001899315.1 PFAM: FAD dependent oxidoreductase; KEGG: nmu:Nmul_A1499 FAD dependent oxidoreductase YP_001899316.1 PFAM: integrase family protein; KEGG: reh:H16_A1678 phage integrase family protein YP_001899317.1 KEGG: dac:Daci_5251 small-conductance mechanosensitive channel-like protein YP_001899318.1 KEGG: cps:CPS_3443 transcriptional regulator, LuxR family YP_001899319.1 PFAM: glycosyl transferase family 39; KEGG: rme:Rmet_5966 glycosyl transferase, family 39 YP_001899320.1 PFAM: GtrA family protein; KEGG: rme:Rmet_5967 GtrA-like protein YP_001899321.1 PFAM: glycosyl transferase family 2; KEGG: rme:Rmet_5968 glycosyl transferase, family 2 YP_001899322.1 KEGG: rme:Rmet_5969 hypothetical protein YP_001899323.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rme:Rmet_5970 heavy metal translocating P-type ATPase YP_001899324.1 KEGG: pna:Pnap_1393 ISXo7 transposase YP_001899325.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: rme:Rmet_5971 flagellar basal-body rod protein FlgB YP_001899326.1 PFAM: porin Gram-negative type; KEGG: rme:Rmet_5974 porin, gram-negative type YP_001899327.1 KEGG: rme:Rmet_5975 hypothetical protein YP_001899328.1 KEGG: rme:Rmet_5976 hypothetical protein YP_001899329.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rme:Rmet_5977 heavy metal sensor signal transduction histidine kinase YP_001899330.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rme:Rmet_5978 two component heavy metal response transcriptional regulator, winged helix family YP_001899331.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rme:Rmet_5979 cation diffusion facilitator family transporter YP_001899332.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rme:Rmet_5980 heavy metal efflux pump CzcA YP_001899333.1 TIGRFAM: Membrane Fusion Protein cluster 2 protein; efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rme:Rmet_5981 membrane fusion protein cluster 2 YP_001899334.1 PFAM: outer membrane efflux protein; KEGG: rme:Rmet_5982 outer membrane efflux protein YP_001899335.1 KEGG: rme:Rmet_5983 hypothetical protein YP_001899337.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rme:Rmet_5984 isoprenylcysteine carboxyl methyltransferase YP_001899338.1 PFAM: MgtC/SapB transporter; KEGG: rme:Rmet_5985 MgtC/SapB transporter YP_001899340.1 KEGG: rme:Rmet_5986 hypothetical protein YP_001899341.1 KEGG: rme:Rmet_5987 hypothetical protein YP_001899342.1 KEGG: rme:Rmet_5988 phage integrase-like SAM-like YP_001899343.1 KEGG: har:HEAR1605 putative cointegrate resolution protein T YP_001899344.1 KEGG: mms:mma_0497 hypothetical protein YP_001899345.1 PFAM: protein of unknown function DUF411; KEGG: bpl:BURPS1106A_A2729 hypothetical protein YP_001899346.1 PFAM: copper resistance D domain protein; KEGG: rso:RSp0659 probable copper resistance D transmembrane protein YP_001899347.1 PFAM: copper resistance protein CopC; KEGG: rme:Rmet_6114 copper resistance protein CopC YP_001899348.1 PFAM: copper resistance B precursor; KEGG: rso:RSp0657 probable copper resistance protein B YP_001899349.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: rso:RSp0656 probable copper resistance transmembrane protein YP_001899350.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSp0655 probable two component response regulator transcription regulator protein YP_001899351.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rso:RSp0654 probable two component sensor histidine kinase transcription regulator protein YP_001899352.1 KEGG: rme:Rmet_6121 hypothetical protein YP_001899353.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bxe:Bxe_C1217 transcriptional regulator, MerR family YP_001899354.1 PFAM: Mercuric transport protein MerT; KEGG: net:Neut_2570 mercuric transport protein MerT YP_001899355.1 TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: sty:HCM1.153 putative mercuric transport protein periplasmic binding protein YP_001899356.1 PFAM: MerC mercury resistance protein; KEGG: pol:Bpro_2229 MerC mercury resistance protein YP_001899357.1 TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: pol:Bpro_2228 mercuric reductase MerA YP_001899358.1 TIGRFAM: mercuric resistence transcriptional repressor protein MerD; PFAM: regulatory protein MerR; KEGG: sty:HCM1.159 putative mercuric resistance operon coregulator YP_001899359.1 PFAM: alkylmercury lyase; KEGG: mms:mma_1753 organomercurial lyase YP_001899360.1 PFAM: cytochrome c class I; KEGG: pol:Bpro_3501 cytochrome c, class I YP_001899361.1 PFAM: Thioredoxin domain; KEGG: reh:H16_A3455 thiol:disulfide interchange protein YP_001899362.1 PFAM: nitrogen regulatory protein P-II; KEGG: pol:Bpro_3498 nitrogen regulatory protein P-II (GlnB, GlnK) YP_001899363.1 KEGG: tbd:Tbd_1833 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein YP_001899364.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: nha:Nham_4413 hypothetical protein YP_001899365.1 PFAM: glutaredoxin 2; KEGG: nca:Noca_3783 glutaredoxin 2 YP_001899366.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: nca:Noca_3785 redoxin domain protein YP_001899367.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: nca:Noca_3784 cytochrome c biogenesis protein, transmembrane region YP_001899369.1 KEGG: bpt:Bpet4578 hypothetical protein YP_001899370.1 KEGG: bpt:Bpet4577 hypothetical protein YP_001899371.1 KEGG: azo:azo3114 hypothetical secreted protein YP_001899372.1 KEGG: mms:mma_0928 hypothetical protein YP_001899373.1 KEGG: bvi:Bcep1808_3972 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein YP_001899374.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bpd:BURPS668_A0596 Cu(I)-responsive transcriptional regulator YP_001899375.1 KEGG: reh:H16_A2184 hypothetical membrane protein YP_001899376.1 KEGG: reh:H16_A2185 cobalt-zinc-cadmium resistance outer membrane porin YP_001899377.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: reh:H16_A2186 cobalt-zinc-cadmium resistance membrane-fusion protein YP_001899378.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rso:RS05405 probable cation efflux system transmembrane protein YP_001899379.1 KEGG: reh:H16_A2188 hypothetical periplasmic protein YP_001899381.1 KEGG: rme:Rmet_6122 hypothetical protein YP_001899382.1 KEGG: rme:Rmet_4461 hypothetical protein YP_001899383.1 TIGRFAM: lipoprotein signal peptidase; PFAM: phosphoesterase PA-phosphatase related; peptidase A8 signal peptidase II; KEGG: sfr:Sfri_3463 lipoprotein signal peptidase YP_001899384.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rme:Rmet_5947 heavy metal translocating P-type ATPase YP_001899385.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: rme:Rmet_5946 transcriptional regulator, MerR family YP_001899386.1 PFAM: cytochrome c class I; iron permease FTR1; KEGG: rme:Rmet_5945 iron permease FTR1 YP_001899387.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ade:Adeh_1022 tyrosine phosphatase YP_001899388.1 PFAM: major intrinsic protein; KEGG: rso:RS05492 probable transmembrane ABC transporter protein YP_001899389.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rso:RSp1128 putative arsenate reductase (arsenical PUMP modifier) protein YP_001899390.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bmu:Bmul_5674 protein tyrosine phosphatase YP_001899391.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reh:H16_A2179 lactoylglutathione lyase YP_001899393.1 PFAM: integrase family protein; KEGG: rso:RS01673 putative integrase/recombinase protein YP_001899394.1 PFAM: Integrase catalytic region; KEGG: rme:Rmet_6067 integrase, catalytic region YP_001899395.1 PFAM: transposase IS3/IS911 family protein; KEGG: rme:Rmet_6068 transposase IS3/IS911 YP_001899396.1 KEGG: pnu:Pnuc_1126 hypothetical protein YP_001899399.1 KEGG: mms:mma_1758 cointegrate resolution protein T YP_001899401.1 PFAM: blue (type 1) copper domain protein; KEGG: rme:Rmet_6116 blue (type 1) copper domain YP_001899402.1 KEGG: rme:Rmet_5976 hypothetical protein YP_001899403.1 KEGG: rme:Rmet_6120 hypothetical protein YP_001899404.1 PFAM: protein of unknown function DUF411; KEGG: bps:BPSS2003 conserved periplasmic protein YP_001899405.1 PFAM: copper resistance D domain protein; KEGG: rso:RSp0659 probable copper resistance D transmembrane protein YP_001899406.1 PFAM: copper resistance protein CopC; KEGG: rme:Rmet_6114 copper resistance protein CopC YP_001899407.1 PFAM: copper resistance B precursor; KEGG: rme:Rmet_6113 copper resistance B precursor YP_001899408.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: rso:RSp0656 probable copper resistance transmembrane protein YP_001899409.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSp0655 probable two component response regulator transcription regulator protein YP_001899410.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rso:RSp0654 probable two component sensor histidine kinase transcription regulator protein YP_001899411.1 PFAM: protein of unknown function DUF326; KEGG: azo:azo1773 hypothetical protein YP_001899412.1 KEGG: rme:Rmet_6121 hypothetical protein YP_001899413.1 KEGG: rso:RSc0612 probable transmembrane protein YP_001899414.1 PFAM: ApbE family lipoprotein; KEGG: reu:Reut_A1180 ApbE-like lipoprotein YP_001899415.1 PFAM: FMN-binding domain protein; KEGG: reu:Reut_A1179 FMN-binding YP_001899416.1 KEGG: pnu:Pnuc_0361 conserved hypothetical secreted protein YP_001899417.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bvi:Bcep1808_3972 heavy metal translocating P-type ATPase YP_001899418.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bpt:Bpet4591 copper resistance protein A precursor YP_001899419.1 PFAM: transposase Tn3 family protein; KEGG: pap:PSPA7_5340 transposase YP_001899420.1 PFAM: Resolvase domain; KEGG: pap:PSPA7_5339 DNA-invertase YP_001899421.1 KEGG: rme:Rmet_6342 hypothetical protein YP_001899422.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: rme:Rmet_6341 addiction module toxin, RelE/StbE YP_001899423.1 KEGG: rme:Rmet_6340 hypothetical protein YP_001899424.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: rme:Rmet_6339 cupin 2, conserved barrel YP_001899425.1 TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: bam:Bamb_6464 outer membrane autotransporter barrel domain YP_001899426.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001899427.1 KEGG: rso:RSc1721 hypothetical protein YP_001899428.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: rso:RSc1720 hypothetical protein YP_001899429.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_001899430.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc1718 probable ATP-binding ABC transporter protein YP_001899431.1 PFAM: lipolytic protein G-D-S-L family; KEGG: rso:RSc1717 probable esterase signal peptide protein YP_001899432.1 KEGG: rso:RSc1716 putative signal peptidase I (SPase I) protein; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_001899433.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rso:RSc1715 probable peptidyl-prolyl cis-trans isomerase transmembrane protein YP_001899434.1 PFAM: histone family protein DNA-binding protein; KEGG: rso:RSc1714 probable DNA-binding protein HU-beta YP_001899435.1 KEGG: rso:RSc1713 probable ATP-dependent protease La protein; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001899436.1 binds and unfolds substrates as part of the ClpXP protease YP_001899437.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_001899438.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_001899439.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules YP_001899440.1 KEGG: rso:RSc1708 hypothetical protein YP_001899441.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_2792 probable acetyltransferase YP_001899442.1 TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: rme:Rmet_5611 cytochrome c oxidase subunit IV YP_001899443.1 TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: rme:Rmet_5610 cytochrome c oxidase, subunit III YP_001899444.1 KEGG: rme:Rmet_5609 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_001899445.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: rme:Rmet_5608 ubiquinol oxidase, subunit II YP_001899446.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rme:Rmet_5607 major facilitator superfamily MFS_1 YP_001899447.1 PFAM: CsbD family protein; KEGG: bxe:Bxe_A3352 hypothetical protein YP_001899448.1 KEGG: reh:H16_B1457 hypothetical protein YP_001899449.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: har:HEAR1463 maleate cis-trans isomerase protein YP_001899450.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_5283 major facilitator superfamily MFS_1 YP_001899451.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A1233 transcriptional regulator, LysR-family YP_001899453.1 KEGG: rso:RS01728 probable transmembrane protein YP_001899454.1 PFAM: ApbE family lipoprotein; KEGG: bbt:BBta_2627 putative thiamine biosynthesis lipoprotein ApbE transmembrane YP_001899455.1 PFAM: FMN-binding domain protein; KEGG: rso:RS01729 probable signal peptide protein YP_001899456.1 PFAM: phosphate-selective porin O and P; KEGG: rso:RS01730 hypothetical signal peptide protein YP_001899457.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: rso:RS01731 probable lipoprotein YP_001899459.1 PFAM: acriflavin resistance protein; KEGG: rso:RSc1654 probable transmembrane drug efflux protein YP_001899460.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSc1653 putative transport/efflux transmembrane protein YP_001899461.1 TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: rso:RSc1652 putative phytoene synthase protein YP_001899462.1 PFAM: protein of unknown function DUF1501; KEGG: rso:RSc1651 hypothetical protein YP_001899463.1 PFAM: Protein of unknown function DUF1800; KEGG: rso:RSc1650 probable signal peptide protein YP_001899464.1 KEGG: rso:RSc1649 putative transmembrane protein YP_001899465.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation YP_001899466.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rso:RSc1647 probable oxidative stress resistance two-component transmembrane sensor histidine kinase transcription regulator protein YP_001899467.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RSc1646 putative alkyl hydroperoxide reductase (subunit C) oxidoreductase protein YP_001899468.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: rme:Rmet_1951 alkylhydroperoxidase AhpD core YP_001899469.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_001899470.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_001899471.1 KEGG: rso:RSc1642 probable transcription-repair coupling factor protein; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001899472.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_001899473.1 KEGG: rso:RSc1640 putative phosphoserine phosphatase protein; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase type 3 YP_001899474.1 PFAM: protein of unknown function DUF1016; KEGG: vei:Veis_1183 protein of unknown function DUF1016 YP_001899475.1 catalyzes the formation of L-homocysteine from cystathionine YP_001899476.1 KEGG: rso:RSc1638 putative signal peptide protein YP_001899477.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA YP_001899478.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_001899479.1 PFAM: dihydrouridine synthase DuS; KEGG: rso:RSc1635 hypothetical protein YP_001899480.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: rso:RSc1634 hypothetical protein YP_001899481.1 catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis YP_001899482.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_001899483.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rso:RSc1631 probable poly-beta-hydroxybutyrate polymerase transmembrane protein YP_001899484.1 KEGG: rso:RSc1630 probable transmembrane protein YP_001899485.1 PFAM: protein of unknown function DUF152; KEGG: rso:RSc1629 hypothetical protein YP_001899486.1 KEGG: rso:RSc1628 probable ribosomal large subunit pseudouridine synthase D protein; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001899487.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: rso:RSc1627 probable transmembrane protein YP_001899488.1 SMART: helicase c2; KEGG: rso:RSc1626 probable ATP-dependent DNA helicase-related protein YP_001899489.1 KEGG: rso:RSc1625 hypothetical protein YP_001899490.1 KEGG: rso:RSc1624 hypothetical protein YP_001899491.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: rso:RSc1623 putative transcription accessory protein YP_001899492.1 KEGG: rso:RSc1622 hypothetical protein YP_001899493.1 PFAM: K potassium transporter; KEGG: rso:RSc1621 probable potassium uptake transmembrane protein YP_001899494.1 KEGG: rso:RSc1620 probable transmembrane protein YP_001899495.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_001899496.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc1618 hypothetical protein YP_001899497.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_001899498.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_001899499.1 PFAM: TM2 domain containing protein?; KEGG: rso:RSc1614 probable transmembrane protein YP_001899500.1 KEGG: rso:RSc1613 hypothetical protein YP_001899501.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: rso:RSc1612 putative iron-sulfur binding protein YP_001899502.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: rso:RSc1611 hypothetical protein YP_001899503.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rso:RSc1610 probable transcription regulator protein YP_001899504.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: rso:RSc1609 putative D-alanyl-D-alanine-endopeptidase (penicillin-binding protein) YP_001899505.1 PFAM: nitroreductase; KEGG: rso:RSc1608 probable oxidoreductase protein YP_001899506.1 PFAM: thioesterase superfamily protein; KEGG: bvi:Bcep1808_1377 thioesterase superfamily protein YP_001899507.1 PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: rso:RSc1607 probable transmembrane protein YP_001899508.1 PFAM: histone deacetylase superfamily; KEGG: rso:RSc1606 hypothetical protein YP_001899509.1 TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: rso:RSc1605 hypothetical protein YP_001899510.1 KEGG: rso:RSc1604 probable transmembrane protein YP_001899511.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rso:RSc1603 probable dihydrolipoamide dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) protein YP_001899512.1 PFAM: 20S proteasome A and B subunits; KEGG: rso:RSc1602 hypothetical protein YP_001899513.1 TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: rso:RSc1601 dihydrolipoamide acetyltransferase YP_001899514.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_001899515.1 KEGG: rso:RSc1598 probable two-component transmembrane sensor histidine kinase transcription regulator protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001899516.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: rso:RSc1597 probable response regulator transcription regulator protein YP_001899517.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_001899518.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: rso:RSc1595 probable oligopeptidase A (OPDA protein) YP_001899519.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rso:RSc1593 probable exodeoxyribonuclease III protein YP_001899520.1 TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; KEGG: rso:RSc1592 probable transcription regulator protein YP_001899521.1 KEGG: rso:RSc1591 putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase oxidoreductase protein; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase YP_001899522.1 KEGG: bur:Bcep18194_B1778 4-oxalocrotonate decarboxylase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase YP_001899523.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: bur:Bcep18194_B1779 5-carboxymethyl-2-hydroxymuconate isomerase YP_001899524.1 KEGG: bch:Bcen2424_4234 3,4-dihydroxyphenylacetate 2,3-dioxygenase; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B YP_001899525.1 TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bur:Bcep18194_B1781 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_001899526.1 KEGG: bcy:Bcer98_0972 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG2 subunit; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase YP_001899527.1 KEGG: bpd:BURPS668_A1023 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase YP_001899528.1 KEGG: rso:RSc1590 hypothetical protein YP_001899529.1 PFAM: amino acid permease-associated region; KEGG: rso:RSc1588 probable amino-acid transporter transmembrane protein YP_001899530.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_001899531.1 KEGG: rso:RSc1586 probable lipoprotein YP_001899532.1 PFAM: Aldose 1-epimerase; KEGG: rso:RSc1585 hypothetical protein YP_001899533.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bur:Bcep18194_A3878 alkylhydroperoxidase AhpD core YP_001899534.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_B1156 transcriptional regulator, AraC family YP_001899535.1 PFAM: regulatory protein MerR; KEGG: bvi:Bcep1808_1771 putative transcriptional regulator, MerR family YP_001899536.1 KEGG: sal:Sala_1640 hypothetical protein YP_001899537.1 PFAM: regulatory protein MerR; KEGG: rso:RSc1584 putative transcription regulator protein YP_001899538.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_001899539.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001899540.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001899541.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001899542.1 PFAM: ribosomal protein L35; KEGG: rso:RSc1579 50S ribosomal protein L35 YP_001899543.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_001899544.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001899545.1 KEGG: rso:RSc1576 probable GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein YP_001899546.1 PFAM: Endoribonuclease L-PSP; KEGG: rso:RSc1575 hypothetical protein YP_001899547.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc1574 putative hydrolase protein YP_001899548.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_001899549.1 KEGG: dac:Daci_4265 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_001899550.1 KEGG: pol:Bpro_1905 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_001899551.1 KEGG: rso:RSc1569 putative transcription regulator protein; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold domain protein; SMART: PAS domain containing protein YP_001899552.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc1568 short chain dehydrogenase YP_001899553.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: rso:RSc1567 probable electron transfer flavoprotein-ubiquinone oxidoreductase YP_001899554.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001899555.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: rso:RSc1565 putative FKBP-type peptidyl-prolyl cis-trans isomerase signal peptide protein YP_001899556.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: rso:RSc1564 probable transmembrane protein YP_001899557.1 PFAM: CBS domain containing protein; KEGG: rso:RSc1563 hypothetical protein YP_001899558.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol YP_001899559.1 PFAM: alpha/beta hydrolase fold; Thioesterase; KEGG: rso:RSc1561 probable hydrolase protein YP_001899560.1 KEGG: rso:RSc1560 putative transmembrane protein YP_001899561.1 PFAM: ribonuclease BN; KEGG: rso:RSc1559 putative ribonuclease BN transmembrane protein YP_001899562.1 TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: rso:RSc1558 probable TRP repressor binding protein YP_001899563.1 KEGG: rso:RSc1557 probable transmembrane protein YP_001899564.1 PFAM: FAD linked oxidase domain protein; KEGG: rso:RSc1556 probable oxidoreductase protein YP_001899565.1 KEGG: rso:RSc1555 hypothetical protein YP_001899566.1 KEGG: ava:Ava_1781 hypothetical protein YP_001899567.1 PFAM: OmpA/MotB domain protein; KEGG: bpd:BURPS668_A0328 OmpA domain protein YP_001899568.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bte:BTH_I2859 transcriptional regulator, AsnC family YP_001899569.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; protein of unknown function DUF442; KEGG: bur:Bcep18194_B2744 hypothetical protein YP_001899570.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rso:RS05577 probable transcription regulator protein YP_001899571.1 catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate YP_001899572.1 KEGG: reh:H16_A3187 hypothetical membrane associated protein YP_001899573.1 PFAM: aldo/keto reductase; KEGG: reu:Reut_A2881 aldo/keto reductase YP_001899574.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rme:Rmet_4091 NADH:flavin oxidoreductase/NADH oxidase YP_001899575.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: rso:RS02983 putative transcription regulator protein YP_001899576.1 KEGG: reh:H16_B2022 hypothetical protein YP_001899577.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: reu:Reut_B3694 lysine exporter protein (LysE/YggA) YP_001899578.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_001899579.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc1544 hypothetical protein YP_001899580.1 PFAM: regulatory protein ArsR; KEGG: rso:RSc1543 probable transcription regulator protein YP_001899581.1 PFAM: protein of unknown function DUF81; KEGG: rso:RSc1541 probable transmembrane protein YP_001899582.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: rso:RSc1539 probable hydrolase protein YP_001899583.1 KEGG: rso:RSc1538 hypothetical protein YP_001899584.1 PFAM: Ppx/GppA phosphatase; KEGG: rso:RSc1537 probable exopolyphosphatase protein YP_001899585.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_001899586.1 KEGG: rso:RSc1535 probable phosphate regulon two-component sensor kinase transcription regulator protein; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein YP_001899587.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSc1534 probable phosphate regulon two-component response regulator transcription regulator protein YP_001899588.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: rso:RSc1533 probable phosphate transport system protein YP_001899589.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_001899590.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_001899591.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_001899592.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc1529 probable phosphate-binding periplasmic (PBP) ABC transporter protein YP_001899593.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_001899594.1 KEGG: rso:RSc1527 probable 7,8-dihydropteroate synthase protein; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_001899595.1 KEGG: rso:RSc1526 probable ATP-dependent zinc metallopeptidase (cell division FtsH) transmembrane protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001899596.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: rso:RSc1525 probable ribosomal RNA large subunit methyltransferase J (cell division protein FtsJ) YP_001899597.1 PFAM: protein of unknown function UPF0044; KEGG: rso:RSc1524 hypothetical protein YP_001899598.1 KEGG: rso:RSc1523 probable transmembrane protein YP_001899599.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001899600.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_001899601.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc1520 leucine export protein LeuE YP_001899602.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_001899603.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent YP_001899604.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: rso:RSc1516 putative membrane-bound lytic murein transglycosylase-like lipoprotein YP_001899605.1 KEGG: rso:RSc1515 putative hydroxyacylglutathione hydrolase protein; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein YP_001899606.1 PFAM: Methyltransferase type 11; KEGG: rso:RSc1514 hypothetical protein YP_001899607.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_001899608.1 KEGG: cvi:CV_1202 probable ribonuclease precursor YP_001899609.1 PFAM: glycoside hydrolase family 24; KEGG: bam:Bamb_4258 lysozyme YP_001899610.1 KEGG: bam:Bamb_4257 hypothetical protein YP_001899611.1 KEGG: bam:Bamb_4256 hypothetical protein YP_001899612.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: bam:Bamb_4255 transcriptional regulator, LuxR family YP_001899613.1 KEGG: rso:RSc1512 hypothetical protein YP_001899614.1 PFAM: SpoVR family protein; KEGG: rme:Rmet_3906 hypothetical protein YP_001899615.1 PFAM: protein of unknown function DUF444; KEGG: reu:Reut_B3554 hypothetical protein YP_001899616.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: reh:H16_B0700 serine protein kinase YP_001899617.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A1704 transcriptional regulator, LysR-family YP_001899618.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; cyclase/dehydrase; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; carbon monoxide dehydrogenase subunit G; KEGG: reu:Reut_C5890 carbon-monoxide dehydrogenase YP_001899619.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: reh:H16_A1702 FAD binding domain in molybdopterin dehydrogenase YP_001899620.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: reu:Reut_C5888 ferredoxin:(2Fe-2S)-binding YP_001899621.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A1700 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II YP_001899624.1 KEGG: reu:Reut_C6251 transferase hexapeptide repeat YP_001899625.1 PFAM: porin Gram-negative type; KEGG: reu:Reut_C6252 porin, gram-negative type YP_001899626.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rso:RS03121 hypothetical protein YP_001899627.1 PFAM: pyruvate carboxyltransferase; KEGG: reh:H16_B2494 hydroxymethylglutaryl-CoA lyase YP_001899628.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B2495 transcriptional regulator, LysR-family YP_001899629.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_6282 major facilitator superfamily MFS_1 YP_001899630.1 KEGG: bvi:Bcep1808_7565 integral membrane protein YP_001899631.1 KEGG: bam:Bamb_4523 hypothetical protein YP_001899632.1 PFAM: transposase IS3/IS911 family protein; KEGG: mlo:msr5972 transposase YP_001899636.1 KEGG: dar:Daro_2699 hypothetical protein YP_001899637.1 KEGG: vvu:VV1_2541 hypothetical protein YP_001899638.1 PFAM: integrase family protein; KEGG: rso:RSc1871 putative integrase prophage protein YP_001899639.1 3'-5' exonuclease of DNA polymerase III YP_001899640.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_001899641.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc1874 hypothetical protein YP_001899642.1 KEGG: rso:RSc1875 hypothetical protein YP_001899643.1 KEGG: rso:RSc1876 hypothetical protein YP_001899644.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: rso:RSc1877 putative aspartyl/asparaginyl beta-hydroxylase transmembrane protein YP_001899645.1 KEGG: rso:RSc1878 putative lipoprotein YP_001899646.1 PFAM: Extracellular ligand-binding receptor; KEGG: rso:RSc1879 putative amino acids-binding transmembrane protein YP_001899647.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc1880 probable transcription regulator protein YP_001899648.1 PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc1881 putative transmembrane oxidoreductase protein YP_001899649.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1882 probable dipeptide transmembrane ABC transporter protein YP_001899650.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1883 probable dipeptide transmembrane ABC transporter protein YP_001899651.1 KEGG: rso:RSc1884 probable oligopeptide ATP-binding ABC transporter protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001899652.1 KEGG: rso:RSc1885 probable oligopeptide ATP-binding ABC transporter protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001899653.1 PFAM: extracellular solute-binding protein family 5; KEGG: rso:RSc1886 probable periplasmic dipeptide transport protein precursor YP_001899654.1 PFAM: acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase; BAAT/Acyl-CoA thioester hydrolase; KEGG: rso:RSc1887 putative acyl coenzyme A thioester hydrolase protein YP_001899655.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: rso:RSc1888 hypothetical protein YP_001899656.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: rso:RSc1889 probable transmembrane isoquinoline 1-oxidoreductase (beta subunit) oxidoreductase protein YP_001899657.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rso:RSc1890 probable isoquinoline 1-oxidoreductase (alpha subunit) oxidoreductase protein YP_001899658.1 KEGG: rso:RSc1891 hypothetical protein YP_001899659.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: rha:RHA1_ro04896 hypothetical protein YP_001899661.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bxe:Bxe_A4301 methyl-accepting chemotaxis sensory transducer YP_001899662.1 KEGG: bam:Bamb_4254 hypothetical protein YP_001899663.1 KEGG: mkm:Mkms_3043 hypothetical protein YP_001899664.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: rso:RSc1951 probable solute:Na+ symporter permease transmembrane protein YP_001899665.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_001899666.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc1953 probable transmembrane protein YP_001899667.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc1954 hypothetical protein YP_001899668.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: rso:RSc1955 probable fumarate hydratase protein YP_001899669.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_001899670.1 PFAM: sodium:dicarboxylate symporter; KEGG: rso:RSc1957 putative glutamate symport transmembrane protein YP_001899671.1 KEGG: rso:RSc1958 hypothetical protein YP_001899672.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001899673.1 KEGG: rso:RS02295 hypothetical protein YP_001899674.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: rso:RSp0965 putative ribonucleotide reductase activating transmembrane protein YP_001899675.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: rso:RS02297 probable transcription regulator protein YP_001899676.1 PFAM: DGC domain protein; KEGG: rso:RS02298 putative lipoprotein YP_001899677.1 KEGG: rso:RS02299 hypothetical protein YP_001899678.1 PFAM: peptidase U32; KEGG: rso:RS02300 hypothetical protein YP_001899679.1 PFAM: peptidase U32; KEGG: rso:RS02301 probable protease protein YP_001899680.1 KEGG: rso:RS02303 probable transmembrane protein YP_001899681.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RSc1961 putative ATPase protein YP_001899682.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: rso:RSc1963 probable TonB transmembrane protein YP_001899683.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: rso:RSc1964 probable biopolymer transport transmembrane protein YP_001899684.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rso:RSc1965 probable biopolymer transport transmembrane protein YP_001899685.1 KEGG: rso:RSc1966 putative hemin uptake protein YP_001899686.1 PFAM: protein of unknown function DUF336; KEGG: rso:RSc1967 probable GlcG protein YP_001899687.1 KEGG: reu:Reut_B5572 hypothetical protein YP_001899689.1 KEGG: rso:RSc1969 probable transmembrane protein YP_001899690.1 KEGG: rso:RSc1970 hypothetical protein YP_001899691.1 TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: rso:RSc1972 putative phasin protein YP_001899692.1 PFAM: PRC-barrel domain protein; KEGG: dac:Daci_4398 PRC-barrel domain protein YP_001899693.1 KEGG: rso:RSc1973 putative osmotically inducible lipoprotein B1 transmembrane YP_001899694.1 involved in the export of lipooligosaccharides during nodulation YP_001899695.1 TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: rso:RSc1975 putative transmembrane permease ABC transporter protein YP_001899696.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_001899697.1 PFAM: Colicin V production protein; KEGG: rso:RSc1977 probable colicin V production transmembrane protein YP_001899698.1 PFAM: Sporulation domain protein; KEGG: rso:RSc1978 probable transmembrane protein YP_001899699.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rso:RSc1979 probable bifunctional protein: folylpolyglutamate synthase and dihydrofolate synthase YP_001899700.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_001899701.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_001899702.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rso:RSc1982 probable DNA-methyltransferase (DNA-modification methylase) protein YP_001899703.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001899704.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_001899705.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001899706.1 KEGG: rso:RSc1986 probable transmembrane protein YP_001899707.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_001899709.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001899710.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_001899711.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_001899712.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_001899713.1 PFAM: protein of unknown function DUF339; KEGG: rso:RSc1992 hypothetical protein YP_001899714.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_001899715.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_001899716.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rso:RSc1995 putative transmembrane succinate dehydrogenase (hydrophobic membrane anchor subunit) oxidoreductase protein YP_001899717.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rso:RSc1996 putative transmembrane succinate dehydrogenase (cytochrome b-556 subunit) oxidoreductase protein YP_001899718.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: rso:RSc1997 probable transcription regulator protein YP_001899719.1 catalyzes the oxidation of malate to oxaloacetate YP_001899720.1 PFAM: HpcH/HpaI aldolase; KEGG: rso:RSc1999 probable lyase protein YP_001899721.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_001899722.1 KEGG: rso:RSc2001 probable signal peptide protein YP_001899723.1 KEGG: rso:RSc2002 2-methylcitrate dehydratase YP_001899724.1 catalyzes the conversion of citrate to isocitrate YP_001899725.1 KEGG: mmu:100042292 similar to CG10953-PA YP_001899726.1 KEGG: rso:RSc2005 hypothetical protein YP_001899727.1 PFAM: extracellular solute-binding protein family 5; KEGG: rso:RSc2006 probable transport binding transmembrane protein YP_001899728.1 KEGG: rso:RSc2007 probable lipoprotein transmembrane YP_001899729.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: rso:RSc2008 hypothetical protein YP_001899730.1 PFAM: protein of unknown function DUF328; KEGG: rso:RSc2009 hypothetical protein YP_001899731.1 SMART: Nucleotide binding protein PINc; KEGG: rso:RSc2010 hypothetical protein YP_001899732.1 catalyzes the transfer of an amino moiety YP_001899733.1 KEGG: rso:RSc2012 probable GST-related protein YP_001899734.1 converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation YP_001899735.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001899736.1 PFAM: Phosphoglycerate mutase; KEGG: rso:RSc2015 putative phosphoglycerate mutase protein YP_001899737.1 PFAM: aminoglycoside phosphotransferase; KEGG: rso:RSc2016 hypothetical protein YP_001899738.1 KEGG: rso:RSc2017 hypothetical protein YP_001899739.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cvi:CV_2810 probable oxidoreductase YP_001899740.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_4064 transcriptional regulator, LysR family YP_001899741.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc2018 probable transcription regulator protein YP_001899742.1 PFAM: thioesterase superfamily protein; KEGG: rso:RSc2019 probable signal peptide protein YP_001899743.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc2020 probable acyl-CoA dehydrogenase oxidoreductase protein YP_001899744.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc2021 putative GST-related protein YP_001899745.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rso:RSc2022 probable transmembrane protein YP_001899747.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: rso:RSc2029 probable urease accessory protein YP_001899748.1 PFAM: Urease accessory protein UreF; KEGG: rso:RSc2030 probable urease accessory protein UreF YP_001899749.1 involved in the assembly of the urease metallocenter; possible nickel donor YP_001899750.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_001899751.1 KEGG: rso:RSc2033 probable urease (beta subunit) protein; TIGRFAM: urease, beta subunit; PFAM: Urease beta subunit YP_001899752.1 PFAM: HupE/UreJ protein; KEGG: rso:RSc2034 probable urease accessory UreJ transmembrane protein YP_001899753.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_001899754.1 PFAM: Urease accessory protein UreD; KEGG: rso:RSc2036 probable urease accessory protein UreD YP_001899755.1 KEGG: rso:RSc2037 probable ATP-binding ABC transporter protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase YP_001899756.1 TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: rso:RSc2038 probable ATP-binding ABC transporter protein YP_001899757.1 TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: rso:RSc2039 probable permease transporter transmembrane protein YP_001899758.1 TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: rso:RSc2040 probable permease transporter transmembrane protein YP_001899759.1 TIGRFAM: urea ABC transporter, urea binding protein; KEGG: rso:RSc2041 putative UreA/short-chain amide-binding signal peptide protein YP_001899760.1 PFAM: MaoC domain protein dehydratase; KEGG: rso:RSc2042 hypothetical protein YP_001899761.1 PFAM: MaoC domain protein dehydratase; KEGG: rso:RSc2043 hypothetical protein YP_001899762.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc2044 putative acyl-CoA dehydrogenase oxidoreductase protein YP_001899763.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rso:RSc2045 putative acyl-CoA dehydrogenase oxidoreductase protein YP_001899764.1 PFAM: protein of unknown function DUF1178; KEGG: rso:RSc2046 hypothetical protein YP_001899765.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc2047 hypothetical protein YP_001899766.1 KEGG: rso:RSc2048 probable transmembrane protein YP_001899767.1 Catalyzes the transfer of electrons from NADH to quinone YP_001899768.1 Catalyzes the transfer of electrons from NADH to quinone YP_001899769.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_001899770.1 Catalyzes the transfer of electrons from NADH to quinone YP_001899771.1 Catalyzes the transfer of electrons from NADH to quinone YP_001899772.1 Catalyzes the transfer of electrons from NADH to quinone YP_001899773.1 Catalyzes the transfer of electrons from NADH to quinone YP_001899774.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_001899775.1 KEGG: rso:RSc2057 probable NADH dehydrogenase I (chain F) oxidoreductase protein; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit YP_001899776.1 Catalyzes the transfer of electrons from NADH to quinone YP_001899777.1 Catalyzes the transfer of electrons from NADH to quinone YP_001899778.1 Catalyzes the transfer of electrons from NADH to quinone YP_001899779.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_001899780.1 Catalyzes the transfer of electrons from NADH to quinone YP_001899781.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: rso:RSc2063 preprotein translocase subunit SecG YP_001899782.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_001899783.1 TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rso:RSc2065 putative NADPH quinone oxidoreductase oxidoreductase protein YP_001899784.1 KEGG: rso:RSc2066 hypothetical protein YP_001899785.1 KEGG: rso:RSc2067 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein YP_001899786.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001899787.1 KEGG: rso:RSc2070 probable transporter signal peptide protein YP_001899788.1 KEGG: rso:RSc2071 probable transmembrane protein YP_001899789.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_001899790.1 KEGG: rso:RSc2073 putative CDP-diacylglycerol--serine O-phosphatidyltransferase protein; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_001899791.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_001899792.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_001899793.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_001899794.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate YP_001899795.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001899796.1 KEGG: rso:RSc2079 probable transmembrane protein YP_001899797.1 KEGG: rso:RSc2080 probable transmembrane protein YP_001899798.1 PFAM: RDD domain containing protein; KEGG: rso:RSc2081 probable transmembrane protein YP_001899799.1 PFAM: PGAP1 family protein; KEGG: rso:RSc2082 putative lipase transmembrane protein YP_001899800.1 PFAM: metallophosphoesterase; KEGG: rso:RSc2083 hypothetical protein YP_001899801.1 PFAM: glycosyl transferase group 1; KEGG: rso:RSc2084 hypothetical protein YP_001899802.1 PFAM: diacylglycerol kinase; KEGG: rso:RSc2085 probable diacylglycerol kinase transmembrane protein YP_001899803.1 PFAM: regulatory protein TetR; KEGG: rso:RSc2086 putative transcription regulator protein YP_001899804.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc2087 hypothetical protein YP_001899805.1 KEGG: rso:RSc2088 probable transmembrane protein YP_001899806.1 PFAM: protein of unknown function DUF924; KEGG: rso:RSc2089 putative transmembrane protein YP_001899807.1 PFAM: globin; KEGG: rso:RSc2090 putative oxygen-binding protein (globin) YP_001899808.1 PFAM: protein of unknown function DUF214; KEGG: rso:RSc2091 probable transmembrane protein YP_001899809.1 PFAM: regulatory protein LysR; KEGG: rso:RSc2092 hypothetical protein YP_001899810.1 PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc2093 probable signal peptide protein YP_001899811.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc2094 probable transcription regulator protein YP_001899812.1 TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: ferredoxin; molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: rso:RSc2095 putative xanthine dehydrogenase (subunit A) oxidoreductase protein YP_001899813.1 KEGG: rso:RSc2096 probable xanthine dehydrogenase (subunit B) oxidoreductase protein; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_001899814.1 TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; KEGG: rso:RSc2097 probable xanthine dehydrogenase protein YP_001899815.1 catalyzes the formation of inosine from adenosine YP_001899816.1 Catalyzes the deamination of guanine YP_001899817.1 PFAM: protein of unknown function UPF0016; KEGG: rso:RSc2100 probable transmembrane protein YP_001899818.1 KEGG: reh:H16_A0659 hypothetical protein YP_001899819.1 KEGG: reh:H16_A0657 hypothetical protein YP_001899820.1 TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: reh:H16_A0656 hypothetical protein YP_001899821.1 PFAM: protein of unknown function DUF989; KEGG: rso:RSc2115 probable transmembrane protein YP_001899822.1 TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: rso:RSc2116 putative transthyretin-like protein precursor YP_001899823.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rso:RSc2117 probable transcription regulator protein YP_001899824.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: rso:RSc2118 putative xanthine permease transmembrane protein YP_001899825.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway. YP_001899826.1 KEGG: rso:RSc2120 hypothetical protein; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase YP_001899827.1 KEGG: rso:RSc2121 hypothetical protein YP_001899828.1 PFAM: porin Gram-negative type; KEGG: rso:RS00714 probable porin precursor transmembrane protein YP_001899829.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_001899830.1 KEGG: rso:RSc2124 probable lipoprotein transmembrane YP_001899831.1 TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: rso:RSc2125 probable aminopeptidase N (alpha-aminoacylpeptide hydrolase) metalloprotease protein YP_001899832.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_001899833.1 PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: rso:RSc2148 hypothetical protein YP_001899834.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: rso:RSc2149 hypothetical protein YP_001899835.1 KEGG: rso:RSc2150 hypothetical protein YP_001899836.1 KEGG: rso:RSc2151 probable signal peptide protein YP_001899837.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bmu:Bmul_5325 transcriptional regulator, LysR family YP_001899838.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mms:mma_0404 transporter of the DMT superfamily YP_001899839.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001899840.1 KEGG: rso:RSc2153 probable bifunctional enzyme : (P)ppGpp synthetase II and guanosine-3',5'-bisdiphosphate 3'-pyrophosphohydrolase (ppGppase) protein; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_001899841.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_001899842.1 Essential for recycling GMP and indirectly, cGMP YP_001899843.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: rso:RSc2156 hypothetical protein YP_001899844.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rso:RSc2157 probable protein kinase YP_001899845.1 PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: rso:RSc2158 hypothetical protein YP_001899846.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_001899847.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_001899848.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001899849.1 PFAM: integrase family protein; KEGG: rso:RSc1896 putative integrase prophage protein YP_001899850.1 KEGG: bvi:Bcep1808_1189 hypothetical protein YP_001899851.1 PFAM: protein of unknown function DUF847; KEGG: bvi:Bcep1808_1188 protein of unknown function DUF847 YP_001899852.1 KEGG: bam:Bamb_2412 hypothetical protein YP_001899853.1 PFAM: heat shock protein DnaJ domain protein; KEGG: tbd:Tbd_1999 heat shock protein DnaJ YP_001899854.1 PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: bpd:BURPS668_0274 flagellar rod assembly protein/muramidase FlgJ YP_001899855.1 KEGG: bvi:Bcep1808_1183 hypothetical protein YP_001899856.1 KEGG: bvi:Bcep1808_1182 DNA transfer protein YP_001899857.1 KEGG: bvi:Bcep1808_1181 GCN5-related N-acetyltransferase YP_001899858.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: bvi:Bcep1808_1180 aspartyl/asparaginyl beta-hydroxylase YP_001899859.1 KEGG: gdi:GDI3683 hypothetical protein YP_001899861.1 KEGG: bvi:Bcep1808_1176 hypothetical protein YP_001899862.1 KEGG: bvi:Bcep1808_1175 hypothetical protein YP_001899863.1 KEGG: mgr:MGG_06033 hypothetical protein YP_001899865.1 KEGG: bvi:Bcep1808_1174 hypothetical protein YP_001899866.1 KEGG: bvi:Bcep1808_1173 hypothetical protein YP_001899867.1 KEGG: bvi:Bcep1808_1172 hypothetical protein YP_001899868.1 KEGG: olu:OSTLU_28282 predicted protein YP_001899869.1 KEGG: bvi:Bcep1808_1171 hypothetical protein YP_001899871.1 KEGG: dvu:DVU1724 phage uncharacterized protein, putative YP_001899872.1 KEGG: pnu:Pnuc_1129 hypothetical protein YP_001899873.1 KEGG: aba:Acid345_4368 hypothetical protein YP_001899874.1 KEGG: bxe:Bxe_A3055 hypothetical protein YP_001899875.1 KEGG: gdi:GDI1281 hypothetical protein YP_001899882.1 KEGG: cko:CKO_01885 hypothetical protein YP_001899883.1 KEGG: bvi:Bcep1808_1164 hypothetical protein YP_001899889.1 KEGG: hau:Haur_0323 hypothetical protein YP_001899890.1 PFAM: endodeoxyribonuclease RusA; KEGG: ngo:NGO0489 hypothetical protein, putative phage associated protein YP_001899891.1 PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; KEGG: bvi:Bcep1808_1163 DnaB domain protein helicase, C-terminal domain protein YP_001899892.1 KEGG: tbd:Tbd_2069 hypothetical protein YP_001899896.1 PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: bpt:Bpet0963 putative transcriptional regulator YP_001899898.1 KEGG: bpt:Bpet2040 hypothetical protein YP_001899902.1 KEGG: mag:amb1496 hypothetical protein YP_001899903.1 KEGG: bra:BRADO3712 conserved hypothetical protein; putative ribonucleoprotein-related protein YP_001899905.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mgi:Mflv_3897 HNH endonuclease YP_001899906.1 KEGG: bxe:Bxe_A3103 hypothetical protein YP_001899909.1 KEGG: bpd:BURPS668_A2376 hypothetical protein YP_001899910.1 PFAM: ERF family protein; KEGG: dac:Daci_3205 ERF family protein YP_001899911.1 KEGG: psb:Psyr_2821 hypothetical protein YP_001899912.1 KEGG: bpe:BP0507 hypothetical protein YP_001899913.1 KEGG: mag:amb1496 hypothetical protein YP_001899914.1 KEGG: pst:PSPTO_3942 hypothetical protein YP_001899915.1 KEGG: mag:amb0459 hypothetical protein YP_001899916.1 KEGG: mag:amb0460 Retron-type reverse transcriptase YP_001899918.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: reu:Reut_A2369 C-5 cytosine-specific DNA methylase YP_001899919.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pde:Pden_0341 DNA methylase N-4/N-6 domain protein YP_001899920.1 KEGG: bur:Bcep18194_B1030 hypothetical protein YP_001899928.1 PFAM: Prophage CP4-57 regulatory; KEGG: bpd:BURPS668_A2390 prophage CP4-57 regulatory protein (AlpA) YP_001899930.1 KEGG: reh:H16_B0962 ligand binding (PAS) regulator with LuxR-type HTH-motif; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001899932.1 KEGG: rso:RSc2164 probable signal peptide protein YP_001899933.1 KEGG: cvi:CV_1820 probable ribonuclease E YP_001899934.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline YP_001899935.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rso:RSc2166 putative signal peptide protein YP_001899936.1 PFAM: protein of unknown function DUF979; KEGG: rso:RSc2167 probable transmembrane protein YP_001899937.1 PFAM: protein of unknown function DUF969; KEGG: rso:RSc2168 probable transmembrane protein YP_001899938.1 PFAM: LamB/YcsF family protein; KEGG: rso:RSc2169 hypothetical protein YP_001899939.1 KEGG: rso:RSc2170 hypothetical protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2 YP_001899940.1 PFAM: Allophanate hydrolase subunit 1; KEGG: rso:RSc2171 hypothetical protein YP_001899941.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc2172 probable drug transport transmembrane protein YP_001899942.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2173 probable sugar ATP binding ABC transporter protein YP_001899943.1 PFAM: inner-membrane translocator; KEGG: rso:RSc2174 probable transmembrane ABC transporter protein YP_001899944.1 PFAM: inner-membrane translocator; KEGG: rso:RSc2175 probable transmembrane ABC transporter protein YP_001899945.1 PFAM: basic membrane lipoprotein; KEGG: rso:RSc2177 probable lipoprotein YP_001899946.1 PFAM: protein of unknown function DUF1232; KEGG: rso:RSc2183 hypothetical protein YP_001899947.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rso:RSc2184 probable NADPH:quinone reductase, zeta-crystallin homolog oxidoreductase protein YP_001899948.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_001899949.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rso:RSc2186 probable dehydrogenase/reductase oxidoreductase protein YP_001899950.1 PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: rso:RSc2187 probable transmembrane protein YP_001899951.1 TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bmu:Bmul_5352 NCS1 nucleoside transporter family YP_001899952.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_001899953.1 PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: rso:RSc2189 hypothetical protein YP_001899954.1 PFAM: protein of unknown function DUF28; KEGG: rso:RSc2190 hypothetical protein YP_001899955.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_001899956.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_001899957.1 catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP YP_001899958.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: rso:RSc2194 hypothetical protein YP_001899959.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_001899960.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_001899961.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: rso:RSc2197 probable ribonuclease G (RNase G) (cytoplasmic axial filament protein) YP_001899962.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: rso:RSc2199 hypothetical protein YP_001899963.1 KEGG: rso:RSc2200 probable composite ATP-binding transmembrane ABC transporter protein; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001899964.1 PFAM: glycosyl transferase family 25; KEGG: reh:H16_A0903 glycosyltransferase involved in LPS biosynthesis YP_001899965.1 PFAM: glycosyl transferase family 2; KEGG: pna:Pnap_2051 glycosyl transferase, family 2 YP_001899966.1 PFAM: glycosyl transferase family 2; KEGG: pna:Pnap_2052 glycosyl transferase, family 2 YP_001899967.1 PFAM: O-antigen polymerase; KEGG: reh:H16_A2881 membrane spanning protein involved in lipopolysaccharide biosynthesis YP_001899968.1 PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_A3289 putative LPS biosynthesis-related protein YP_001899969.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_001899970.1 PFAM: Rhodanese domain protein; KEGG: rso:RSc2206 hypothetical protein YP_001899971.1 KEGG: rso:RSc2207 putative TRP repressor binding protein homolog YP_001899972.1 PFAM: Pirin domain protein; KEGG: rso:RSc2208 putative pirin-like protein YP_001899973.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc2209 probable transcriptional regulator transcription regulator protein YP_001899974.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_001899975.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: rso:RSc2211 probable ATP-dependent RNA helicase protein YP_001899976.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc2212 hypothetical protein YP_001899977.1 PFAM: regulatory protein TetR; KEGG: rso:RSc2213 putative transcription regulator transcription regulator protein YP_001899978.1 activates fatty acids by binding to coenzyme A YP_001899979.1 PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: reh:H16_A3290 biotin carboxylase YP_001899980.1 KEGG: reu:Reut_A2998 extracellular ligand-binding receptor YP_001899981.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc2214 hypothetical protein YP_001899983.1 PFAM: OmpW family protein; KEGG: bpd:BURPS668_3131 outer membrane protein, OmpW family YP_001899984.1 KEGG: bpd:BURPS668_3132 putative lipoprotein YP_001899985.1 KEGG: bur:Bcep18194_B0544 hypothetical protein YP_001899986.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_001899987.1 synthesizes RNA primers at the replication forks YP_001899988.1 KEGG: rso:RSc2217 hypothetical protein YP_001899989.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rso:RSc2218 putative transmembrane protein YP_001899990.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001899991.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_001899992.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001899993.1 PFAM: Polyprenyl synthetase; KEGG: rso:RSc2222 probable geranyltranstransferase (farnesyl-diphosphate synthase) protein YP_001899994.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_001899995.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rso:RSc2224 probable dioxygenase (alpha subunit) oxidoreductase protein YP_001899996.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc2225 probable transmembrane protein YP_001899997.1 PFAM: Rhodanese domain protein; KEGG: rso:RSc2226 probable thiosulfate sulfurtransferase protein YP_001899998.1 PFAM: zinc/iron permease; KEGG: rso:RSc2227 probable transmembrane protein YP_001899999.1 PFAM: dienelactone hydrolase; KEGG: rso:RSc2228 putative carboxymethylenebutenolidase (dienelactone hydrolase) protein YP_001900000.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: rso:RSc2229 probable NADH dehydrogenase, membrane flavoprotein FAD NAD ubiquinone electron transport oxidoreductase YP_001900001.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_001900002.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc2231 hypothetical protein YP_001900003.1 KEGG: rso:RSc2232 putative transmembrane protein YP_001900004.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine YP_001900005.1 KEGG: rso:RSc2234 probable transmembrane protein YP_001900006.1 PFAM: UvrD/REP helicase; KEGG: rso:RSc2235 probable DNA helicase II protein YP_001900007.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001900008.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: rso:RSc2237 probable UTP--glucose-1-phosphate uridylyltransferase protein YP_001900009.1 KEGG: rso:RSc2238 probable transmembrane protein YP_001900010.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001900011.1 KEGG: rso:RSc2240 hypothetical protein YP_001900012.1 PFAM: TM1410 hypothetical-related protein; KEGG: rso:RSc2241 hypothetical protein YP_001900013.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_001900014.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc2243 probable transcription regulator protein YP_001900015.1 PFAM: Extracellular ligand-binding receptor; KEGG: rso:RSc2244 probable substrate-binding periplasmic ABC transporter protein YP_001900016.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2245 probable ATP-binding ABC transporter protein YP_001900017.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2246 probable ATP-binding ABC transporter protein YP_001900018.1 PFAM: inner-membrane translocator; KEGG: rso:RSc2247 probable transmembrane ABC transporter protein YP_001900019.1 PFAM: inner-membrane translocator; KEGG: rso:RSc2248 probable transmembrane ABC transporter protein YP_001900020.1 KEGG: rso:RSc2249 putative 4-carboxymuconolactone decarboxylase protein; TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase YP_001900021.1 TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc2250 probable B-ketoadipate enol-lactone hydrolase transmembrane protein YP_001900022.1 Catalyzes the cycloisomerization of cis,cis-muconate YP_001900023.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_001900024.1 KEGG: rso:RSc2253 probable 3-oxoadipate CoA-transferase subunit B protein; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_001900025.1 KEGG: rso:RSc2254 probable 3-oxoadipate CoA-transferase subunit A protein; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_001900026.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rso:RSc2255 probable transcription regulator protein YP_001900027.1 KEGG: rso:RSc2256 putative signal peptide protein YP_001900028.1 PFAM: extracellular solute-binding protein family 3; KEGG: rso:RSc2257 probable amino-acid-binding periplasmic ABC transporter protein YP_001900029.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2258 probable amino acid transmembrane ABC transporter protein YP_001900030.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2259 probable amino acid transmembrane ABC transporter protein YP_001900031.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2260 probable amino-acid ATP-binding ABC transporter protein YP_001900032.1 PFAM: extracellular solute-binding protein family 3; KEGG: rso:RSc2261 putative amino-acid-binding periplasmic (PBP) ABC transporter protein YP_001900033.1 catalyzes the oxidative deamination of D-amino acids YP_001900034.1 KEGG: rso:RSc2270 probable transmembrane protein YP_001900035.1 PFAM: glycosyl transferase group 1; KEGG: rso:RSc2271 hypothetical protein YP_001900036.1 KEGG: rso:RSc2272 probable transmembrane protein YP_001900037.1 KEGG: rso:RSc2273 probable transmembrane protein YP_001900038.1 KEGG: rso:RSc2274 putative lipoprotein YP_001900039.1 PFAM: TM1410 hypothetical-related protein; KEGG: rso:RSc2276 putative signal peptide protein YP_001900040.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rso:RSc2277 probable transmembrane protein YP_001900041.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: bbt:BBta_0837 putative carboxymuconolactone decarboxylase YP_001900042.1 PFAM: regulatory protein MerR; KEGG: rfr:Rfer_4023 transcriptional regulator, MerR family YP_001900043.1 KEGG: rso:RSc2279 signal peptide protein YP_001900044.1 KEGG: rso:RSc2280 probable signal peptide protein YP_001900045.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: fal:FRAAL4174 conserved hypothetical protein; putative signal peptide YP_001900046.1 PFAM: MltA-interacting MipA family protein; KEGG: rso:RSc2284 putative transmembrane protein YP_001900047.1 KEGG: bxe:Bxe_B1529 hypothetical protein YP_001900048.1 SMART: extracellular solute-binding protein family 3; KEGG: reh:H16_B1057 ABC-type transporter, periplasmic component YP_001900049.1 KEGG: reu:Reut_A1777 cytochrome c-type protein YP_001900050.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rme:Rmet_5127 sigma54 specific transcriptional regulator with GAF sensor, fis family YP_001900051.1 PFAM: alpha/beta hydrolase fold; KEGG: reh:H16_B1053 prolyl aminopeptidase YP_001900052.1 Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis; probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme YP_001900053.1 possibly involved in transport of pyrroloquinoline quinone transport YP_001900054.1 Required in the synthesis of PPQ, but its exact function is unknown YP_001900055.1 PFAM: coenzyme PQQ synthesis D; KEGG: reh:H16_B1050 pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein D YP_001900056.1 KEGG: reu:Reut_A1782 pyrroloquinoline quinone biosynthesis protein PqqE; TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001900057.1 PFAM: cytochrome c class I; KEGG: reh:H16_B1048 cytochrome c551/c552 YP_001900058.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: reh:H16_B1047 quinate dehydrogenase (PQQ) YP_001900059.1 PFAM: cytochrome B561; KEGG: bxe:Bxe_B2465 putative cytochrome b561 YP_001900060.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: reu:Reut_B5421 WD-40 repeat YP_001900061.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bvi:Bcep1808_6560 TonB-dependent receptor YP_001900062.1 PFAM: Aldehyde Dehydrogenase_; KEGG: rme:Rmet_5128 aldehyde dehydrogenase YP_001900063.1 KEGG: reh:H16_B1045 hypothetical membrane associated protein YP_001900064.1 PFAM: beta-lactamase domain protein; KEGG: reh:H16_B1046 Zn-dependent hydrolase or glyoxylase YP_001900065.1 PFAM: beta-lactamase domain protein; KEGG: reh:H16_B1054 Zn-dependent hydrolase or glyoxylase YP_001900066.1 KEGG: mpt:Mpe_A1592 putative outer membrane protein (porin) YP_001900067.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: rso:RS02093 hypothetical protein YP_001900068.1 KEGG: bvi:Bcep1808_7219 propeptide, PepSY amd peptidase M4 YP_001900069.1 PFAM: protein of unknown function DUF347; KEGG: bvi:Bcep1808_7221 protein of unknown function DUF347 YP_001900070.1 KEGG: bvi:Bcep1808_7222 conserved hypothetical signal peptide protein YP_001900071.1 PFAM: protein of unknown function DUF347; KEGG: rme:Rmet_4979 protein of unknown function DUF347 YP_001900072.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: bvi:Bcep1808_6183 hemerythrin HHE cation binding domain protein YP_001900073.1 KEGG: bvi:Bcep1808_6184 hypothetical protein YP_001900074.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bvi:Bcep1808_6185 putative transcriptional regulator, Crp/Fnr family YP_001900075.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: bte:BTH_II0362 succinate dehydrogenase, iron-sulfur protein YP_001900076.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: bvi:Bcep1808_6190 hypothetical protein YP_001900077.1 PFAM: major facilitator superfamily MFS_1; KEGG: bte:BTH_II1254 nitrate/nitrite transporter YP_001900078.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bpl:BURPS1106A_A1541 PPIC-type PPIase domain protein YP_001900079.1 KEGG: bmu:Bmul_5386 respiratory nitrate reductase, gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit YP_001900080.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: bpl:BURPS1106A_A1543 nitrate reductase molybdenum cofactor assembly chaperone YP_001900081.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: bte:BTH_II1250 nitrate reductase, beta subunit YP_001900082.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: bam:Bamb_5711 nitrate reductase, alpha subunit YP_001900083.1 PFAM: Integrase catalytic region; KEGG: bbt:BBta_p0210 putative insertion element protein YP_001900084.1 PFAM: protein of unknown function UPF0126; KEGG: ajs:Ajs_3728 protein of unknown function UPF0126 YP_001900085.1 KEGG: reu:Reut_B5217 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001900086.1 KEGG: pfo:Pfl_3820 hypothetical protein YP_001900087.1 KEGG: bxe:Bxe_B0910 hypothetical protein YP_001900088.1 KEGG: rso:RSc2288 hypothetical protein YP_001900089.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RS03915 putative thiol:disulfide interchange protein YP_001900090.1 KEGG: rso:RSc0850 hypothetical protein YP_001900091.1 KEGG: aav:Aave_2651 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein YP_001900092.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo1226 lactoylglutathione lyase YP_001900093.1 KEGG: vei:Veis_2704 hypothetical protein YP_001900094.1 PFAM: glucose-methanol-choline oxidoreductase; KEGG: mpt:Mpe_A0945 putative 2-keto-gluconate dehydrogenase YP_001900095.1 KEGG: vei:Veis_2706 hypothetical protein YP_001900096.1 PFAM: cytochrome c class I; KEGG: rme:Rmet_3424 cytochrome c, class I YP_001900098.1 KEGG: ppd:Ppro_0272 putative phage repressor YP_001900099.1 KEGG: rme:Rmet_4494 hypothetical protein YP_001900104.1 KEGG: xom:XOO_2144 hypothetical protein YP_001900106.1 KEGG: lma:LmjF35.0540 proteophosphoglycan 5 YP_001900107.1 KEGG: pmy:Pmen_2113 hypothetical protein YP_001900108.1 PFAM: Zonular occludens toxin; KEGG: pmy:Pmen_2112 zonular occludens toxin YP_001900109.1 KEGG: rme:Rmet_4488 hypothetical protein YP_001900110.1 PFAM: Resolvase domain; KEGG: bpd:BURPS668_2984 putative site-specific recombinases, DNA invertase Pin YP_001900111.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001900112.1 PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: rso:RSc2338 recombination factor protein RarA YP_001900113.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A3439 transcriptional regulator, LysR family YP_001900114.1 KEGG: rso:RSc2339 probable lipoprotein transmembrane YP_001900115.1 participates with LolB in the incorporation of lipoprotein into the outer membrane YP_001900116.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: rso:RSc2341 probable cell division FtsK transmembrane protein YP_001900117.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rso:RSc2342 probable thioredoxin reductase oxidoreductase protein YP_001900118.1 PFAM: Smr protein/MutS2; KEGG: rso:RSc2343 hypothetical protein YP_001900119.1 PFAM: protein of unknown function UPF0126; KEGG: rso:RSc2344 probable transmembrane protein YP_001900120.1 PFAM: nitrogen regulatory protein P-II; KEGG: rso:RSc2345 probable nitrogen regulatory P-II transcription regulator protein YP_001900121.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rso:RSc2346 putative methyltransferase protein YP_001900122.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_001900123.1 PFAM: protein of unknown function DUF482; KEGG: rso:RSc2348 hypothetical protein YP_001900125.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_001900126.1 PFAM: Aldehyde Dehydrogenase_; KEGG: rso:RSc2350 probable aldehyde dehydrogenase oxidoreductase protein YP_001900127.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001900128.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc2352 probable permease transmembrane protein YP_001900129.1 PFAM: HemY domain protein; KEGG: rso:RSc2355 putative protein porphyrin biosynthesis YP_001900130.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane and the formation of precorrin-2 from uroporphyrin III and S-adenosyl-L-methionine by two sequential methylation reactions; functions in tetrapyrrole and heme biosynthesis YP_001900131.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_001900132.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_001900133.1 KEGG: rso:RSc2360 hypothetical protein YP_001900134.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rso:RSc2361 probable RNA polymerase sigma-E factor sigma-24 homolog transcription regulator protein YP_001900135.1 KEGG: rso:RSc2362 probable transmembrane protein YP_001900136.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_001900137.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: rso:RSc2365 probable biodegradative arginine decarboxylase protein YP_001900138.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_001900139.1 PFAM: formate dehydrogenase subunit FdhD; KEGG: rso:RSc2367 probable FdhD protein homolog YP_001900140.1 PFAM: superoxide dismutase copper/zinc binding; KEGG: rso:RSc2368 probable superoxide dismutase Cu-Zn precursor protein YP_001900141.1 KEGG: rso:RSc2369 hypothetical signal peptide protein YP_001900142.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: rso:RSc2370 hypothetical protein YP_001900143.1 KEGG: rso:RSc2371 putative lipoprotein YP_001900144.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rso:RSc2372 probable formate dehydrogenase (iron-sulfur subunit) oxidoreductase protein YP_001900145.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rso:RSc2373 probable formate dehydrogenase (large subunit) oxidoreductase protein YP_001900146.1 TIGRFAM: formate dehydrogenase region TAT target; KEGG: rso:RSc2374 putative transmembrane protein YP_001900147.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: rso:RSc2375 hypothetical protein YP_001900148.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rso:RSc2376 putative ferredoxin protein YP_001900149.1 KEGG: rso:RSc2377 proline rich protein YP_001900150.1 KEGG: rso:RSc2378 hypothetical protein YP_001900151.1 PFAM: protein of unknown function DUF59; KEGG: rso:RSc2379 probable MRP protein ATP-binding YP_001900152.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: rso:RSc2380 probable transmembrane protein YP_001900153.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001900154.1 KEGG: rso:RSc2382 probable lipoprotein YP_001900155.1 PFAM: protein of unknown function DUF490; KEGG: rso:RSc2383 putative signal peptide protein YP_001900156.1 PFAM: surface antigen (D15); KEGG: rso:RSc2384 putative lipoprotein YP_001900157.1 KEGG: rso:RSc2385 hypothetical protein YP_001900158.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: rso:RSc2386 hypothetical protein YP_001900159.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_001900160.1 PFAM: integrase family protein; KEGG: rme:Rmet_3045 phage integrase YP_001900161.1 PFAM: protein of unknown function DUF1016; KEGG: dac:Daci_2744 protein of unknown function DUF1016 YP_001900162.1 KEGG: rme:Rmet_3043 hypothetical protein YP_001900163.1 KEGG: dac:Daci_2742 hypothetical protein YP_001900164.1 KEGG: dac:Daci_2741 hypothetical protein YP_001900165.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dac:Daci_2740 UBA/ThiF-type NAD/FAD binding protein YP_001900166.1 KEGG: dac:Daci_2739 hypothetical protein YP_001900167.1 KEGG: rme:Rmet_3038 hypothetical protein YP_001900168.1 KEGG: dac:Daci_2737 hypothetical protein YP_001900169.1 KEGG: rme:Rmet_3036 hypothetical protein YP_001900170.1 PFAM: protein of unknown function DUF932; KEGG: dac:Daci_0468 protein of unknown function DUF932 YP_001900171.1 PFAM: ParB domain protein nuclease; KEGG: ajs:Ajs_2943 ParB domain protein nuclease YP_001900172.1 KEGG: ajs:Ajs_2942 hypothetical protein YP_001900173.1 KEGG: pst:PSPTO_0583 hypothetical protein YP_001900174.1 PFAM: protein of unknown function DUF736; KEGG: rme:Rmet_3029 protein of unknown function DUF736 YP_001900175.1 PFAM: helix-turn-helix domain protein; KEGG: dac:Daci_2729 helix-turn-helix domain protein YP_001900176.1 KEGG: dac:Daci_2728 putative lipoprotein YP_001900177.1 KEGG: ajs:Ajs_2935 hypothetical protein YP_001900178.1 KEGG: rme:Rmet_3025 hypothetical protein YP_001900179.1 KEGG: rme:Rmet_3024 conserved hypothetical replication initiator and transcription repressor protein YP_001900180.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rme:Rmet_3023 cobyrinic acid a,c-diamide synthase YP_001900181.1 KEGG: rme:Rmet_3022 hypothetical protein YP_001900182.1 KEGG: rme:Rmet_3021 hypothetical protein YP_001900183.1 KEGG: rme:Rmet_3020 putative conjugal transfer TRAF transmembrane protein YP_001900184.1 KEGG: dac:Daci_0453 hypothetical protein YP_001900185.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_0998 short-chain dehydrogenase/reductase SDR YP_001900186.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: azo:azo1927 probable enoyl-CoA hydratase YP_001900187.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: rrs:RoseRS_2545 acetyl-CoA acetyltransferase YP_001900188.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dol:Dole_2557 AMP-dependent synthetase and ligase YP_001900189.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_2692 L-carnitine dehydratase/bile acid-inducible protein F YP_001900190.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: reh:H16_B0699 acyl-CoA dehydrogenase, long-chain specific YP_001900191.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bvi:Bcep1808_5639 helix-turn-helix-domain containing protein, AraC type YP_001900193.1 PFAM: beta-lactamase domain protein; KEGG: reh:H16_B1182 metallo-beta-lactamase YP_001900194.1 KEGG: ajs:Ajs_2731 transposase family protein YP_001900195.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pna:Pnap_2108 major facilitator superfamily MFS_1 YP_001900196.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: azo:azo1702 probable acyl-CoA dehydrogenase YP_001900197.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ajs:Ajs_3731 electron transfer flavoprotein beta-subunit YP_001900198.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: vei:Veis_2092 electron transfer flavoprotein, alpha subunit YP_001900199.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_2703 transcriptional regulator, LysR family YP_001900200.1 KEGG: dac:Daci_0441 hypothetical protein YP_001900201.1 type IV secretion VirD4 coupling protein family YP_001900202.1 KEGG: dac:Daci_2700 CopG domain protein DNA-binding domain protein YP_001900203.1 TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: ajs:Ajs_2911 type II secretion system protein E YP_001900204.1 PFAM: Conjugal transfer protein TrbC; KEGG: ajs:Ajs_2910 conjugal transfer protein TrbC YP_001900205.1 KEGG: bmu:Bmul_2352 putative conjugal transfer TrbD transmembrane protein YP_001900206.1 type IV secretion system VirB4 family YP_001900207.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: dac:Daci_2695 P-type conjugative transfer protein TrbJ YP_001900208.1 type IV secretion VirB6 family YP_001900209.1 PFAM: Conjugal transfer protein; KEGG: ajs:Ajs_2904 conjugal transfer protein YP_001900210.1 TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: dac:Daci_2691 P-type conjugative transfer protein TrbG YP_001900211.1 PFAM: conjugation TrbI family protein; KEGG: dac:Daci_2690 conjugation TrbI family protein YP_001900212.1 KEGG: aav:Aave_0736 hypothetical protein YP_001900213.1 KEGG: rso:RSc2389 putative partition-related protein YP_001900214.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_001900215.1 PFAM: cobalbumin biosynthesis protein; KEGG: rso:RSc2391 probable cobalamin biosynthesis bifunctional protein: cobinamide kinase and cobinamide phosphate guanylyltransferase YP_001900216.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_001900217.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase YP_001900218.1 PFAM: periplasmic binding protein; KEGG: rso:RSc2394 probable substrate-binding periplasmic (PBP) ABC transporter protein YP_001900219.1 TIGRFAM: alpha-ribazole phosphatase; PFAM: Phosphoglycerate mutase; KEGG: rso:RSc2395 hypothetical protein YP_001900220.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_001900221.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_001900222.1 KEGG: rme:Rmet_2786 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_001900223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2398 probable ATP-binding ABC transporter protein YP_001900224.1 PFAM: transport system permease protein; KEGG: rso:RSc2399 probable transmembrane ABC transporter protein YP_001900225.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RSc2400 probable outer membrane receptor protein YP_001900226.1 KEGG: rso:RSc2401 hypothetical protein YP_001900227.1 PFAM: protein of unknown function DUF710; KEGG: rso:RSc2402 hypothetical protein YP_001900228.1 PFAM: protein of unknown function DUF55; KEGG: rso:RSc2403 hypothetical protein YP_001900229.1 PFAM: protein of unknown function DUF541; KEGG: reu:Reut_A0649 protein of unknown function DUF541 YP_001900230.1 PFAM: Integrase catalytic region; KEGG: pol:Bpro_3089 integrase, catalytic region YP_001900231.1 KEGG: pol:Bpro_1225 ISPsy11, transposase OrfA YP_001900232.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_001900233.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc2411 probable transcription regulator protein YP_001900234.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001900235.1 KEGG: rso:RSc2413 hypothetical protein YP_001900236.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_001900237.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_001900238.1 PFAM: permease YjgP/YjgQ family protein; KEGG: rso:RSc2416 probable transmembrane protein YP_001900239.1 PFAM: permease YjgP/YjgQ family protein; KEGG: rso:RSc2417 probable transmembrane protein YP_001900240.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: rso:RSc2418 hypothetical protein YP_001900241.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: rso:RSc2419 putative 5-carboxymethyl-2-hydroxymuconate delta-isomerase protein YP_001900242.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1 YP_001900243.1 KEGG: rso:RSc2421 probable sulfate adenylyltransferase subunit 1 protein; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_001900244.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_001900245.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_001900246.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc2424 hypothetical protein YP_001900247.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: rso:RSc2425 probable sulfite reductase oxidoreductase protein YP_001900248.1 PFAM: protein of unknown function DUF81; KEGG: rso:RSc2426 probable transmembrane protein YP_001900249.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc2427 transcriptional regulator CysB-like protein YP_001900250.1 KEGG: rso:RSc2428 probable amino acid-binding periplasmic (PBP) ABC transporter protein YP_001900251.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rso:RSc2429 probable oxidoreductase protein YP_001900252.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001900253.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid YP_001900254.1 PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_1134 major facilitator superfamily MFS_1 YP_001900255.1 PFAM: regulatory protein MarR; KEGG: rso:RSc2430 putative transcription regulator protein YP_001900256.1 PFAM: CBS domain containing protein; Chloride channel core; KEGG: rso:RSc2431 probable transmembrane protein YP_001900257.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rso:RSc2432 probable transmembrane protein YP_001900258.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: rso:RSc2433 putative oxidoreductase protein YP_001900259.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose YP_001900260.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_001900261.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSc2436 hypothetical protein YP_001900262.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2437 probable amino acid ATP-binding ABC transporter protein YP_001900263.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2438 probable amino acid ATP-binding ABC transporter protein YP_001900264.1 PFAM: inner-membrane translocator; KEGG: rso:RSc2439 probable amino-acid transmembrane ABC transporter protein YP_001900265.1 PFAM: inner-membrane translocator; KEGG: rso:RSc2440 putative amino-acid transmembrane ABC transporter protein YP_001900266.1 PFAM: Extracellular ligand-binding receptor; KEGG: rme:Rmet_2867 extracellular ligand-binding receptor YP_001900267.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001900268.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: rso:RSc2443 probable FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase protein YP_001900269.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_001900270.1 required for 70S ribosome assembly YP_001900271.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001900272.1 catalyzes the formation of oxaloacetate from L-aspartate YP_001900273.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_001900274.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_001900275.1 PFAM: fatty acid desaturase; KEGG: rso:RSc2450 putative stearoyl-CoA desaturase oxidoreductase protein YP_001900276.1 PFAM: MscS Mechanosensitive ion channel; KEGG: rso:RSc2451 hypothetical protein YP_001900277.1 KEGG: rso:RSc2452 putative endonuclease protein YP_001900278.1 PFAM: Fmu (Sun) domain protein; KEGG: rso:RSc2453 hypothetical protein YP_001900279.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_001900280.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: rso:RSc2455 response regulator VSRC transcription regulator protein YP_001900281.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RSc2456 composite two-component regulatory (sensor kinase and response regulator hybrid) transcription regulator protein YP_001900282.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_001900283.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_001900284.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_001900285.1 KEGG: sen:SACE_5646 alpha/beta hydrolase YP_001900286.1 PFAM: protein of unknown function DUF218; KEGG: rso:RSc2460 putative transmembrane protein YP_001900287.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_001900288.1 PFAM: Luciferase-like monooxygenase; KEGG: rso:RSc2462 hypothetical protein YP_001900289.1 catalyzes the formation of dUMP from dUTP YP_001900290.1 KEGG: rso:RSc2464 probable ATP-dependent protease (ATP-binding specificity subunit) protein; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_001900291.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_001900292.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rso:RSc2466 probable cold shock-like CspD transcription regulator protein YP_001900293.1 KEGG: bmu:Bmul_1501 hypothetical protein YP_001900294.1 KEGG: rso:RSc2467 probable transmembrane protein YP_001900296.1 KEGG: rso:RSc2472 putative transmembrane protein YP_001900298.1 KEGG: shm:Shewmr7_0699 hypothetical protein YP_001900299.1 KEGG: swi:Swit_3488 glucan biosynthesis protein G YP_001900300.1 KEGG: ppd:Ppro_3130 hypothetical protein YP_001900301.1 KEGG: bvi:Bcep1808_4560 hypothetical protein YP_001900302.1 KEGG: hpa:HPAG1_0502 cag pathogenicity island protein Y YP_001900303.1 KEGG: azo:azo1867 hypothetical protein YP_001900304.1 KEGG: hso:HS_0523 hypothetical protein YP_001900305.1 PFAM: Prophage CP4-57 regulatory; KEGG: bvi:Bcep1808_5778 phage transcriptional regulator, AlpA YP_001900307.1 PFAM: integrase family protein; KEGG: rso:RSc2489 putative integrase protein YP_001900308.1 Converts isocitrate to alpha ketoglutarate YP_001900310.1 KEGG: rso:RSc2491 hypothetical signal peptide protein YP_001900311.1 PFAM: metallophosphoesterase; KEGG: rso:RSc2492 hypothetical protein YP_001900312.1 KEGG: rso:RSc2493 probable signal peptide protein YP_001900313.1 PFAM: protein of unknown function DUF192; KEGG: rso:RSc2494 hypothetical signal peptide protein YP_001900314.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc2495 hypothetical hydrolase protein YP_001900315.1 KEGG: rso:RSc2496 hypothetical signal peptide protein YP_001900316.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc2497 probable transcription regulator protein YP_001900317.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc2498 probable transcription regulator protein YP_001900318.1 KEGG: pna:Pnap_1393 ISXo7 transposase YP_001900319.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc2499 putative multidrug resistance protein YP_001900320.1 PFAM: DoxX family protein; KEGG: rso:RSc2500 probable transmembrane protein YP_001900321.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A2778 transcriptional regulator, LysR-family YP_001900322.1 PFAM: gamma-glutamyltranspeptidase; KEGG: rso:RSc2501 putative gamma-glutamyltranspeptidase protein YP_001900323.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A0645 major facilitator superfamily (MFS) metabolite/H+ symporter YP_001900324.1 KEGG: reh:H16_B0892 hypothetical protein YP_001900325.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: bxe:Bxe_B0029 putative dihydrodipicolinate synthase YP_001900326.1 KEGG: rso:RSc2502 probable transmembrane protein YP_001900327.1 PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: rso:RSc2503 hypothetical protein YP_001900328.1 Converts glucose to D-glucono-1,5 lactone YP_001900329.1 PFAM: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; Ada metal-binding domain protein; AlkA domain protein; KEGG: rso:RSc2505 putative transcription regulator protein YP_001900330.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: rso:RSc2506 probable methylated-DNA--protein-cysteine methyltransferase YP_001900331.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc2507 probable transmembrane protein YP_001900332.1 PFAM: HipA domain protein; KEGG: rso:RSc2508 hypothetical protein YP_001900333.1 KEGG: rso:RSc2509 hypothetical protein YP_001900334.1 KEGG: ccr:CC_2809 peptidase, M20/M25/M40 family; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001900335.1 PFAM: extracellular solute-binding protein family 3; KEGG: rso:RSc2512 putative cyclohexadienyl dehydratase precursor signal peptide protein YP_001900336.1 KEGG: ecv:APECO1_O1R83 TetA YP_001900337.1 KEGG: rso:RSc2513 hypothetical protein YP_001900338.1 KEGG: rso:RSc2514 hypothetical signal peptide protein YP_001900339.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: rso:RSc2515 hypothetical protein YP_001900340.1 PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rso:RSc2516 putative lipoprotein transmembrane YP_001900341.1 PFAM: protein of unknown function DUF81; KEGG: rso:RSc2517 hypothetical protein YP_001900343.1 PFAM: Integrase catalytic region; KEGG: pol:Bpro_3089 integrase, catalytic region YP_001900344.1 KEGG: pol:Bpro_1225 ISPsy11, transposase OrfA YP_001900345.1 PFAM: Citrate transporter; KEGG: rso:RSc2518 hypothetical protein YP_001900346.1 KEGG: rso:RSc2519 hypothetical protein YP_001900347.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rme:Rmet_3403 major facilitator superfamily MFS_1 YP_001900348.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: rso:RSc2520 hypothetical protein YP_001900349.1 PFAM: histone family protein DNA-binding protein; KEGG: rso:RSc2521 probable DNA-binding protein HU-beta (NS1) (HU-1) YP_001900350.1 PFAM: protein of unknown function DUF886; KEGG: rso:RSc2522 hypothetical protein YP_001900351.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate YP_001900352.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A0045 ABC-type transporter, ATPase component: PAAT family YP_001900353.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_A0046 ABC-type transporter, permease component: PAAT family YP_001900354.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: reu:Reut_A1594 extracellular solute-binding protein, family 3 YP_001900355.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: reh:H16_A0048 transcriptional regulator, IclR-family YP_001900356.1 KEGG: rso:RSc1455 probable proline-rich protein YP_001900357.1 PFAM: protein of unknown function DUF1486; KEGG: bte:BTH_I2604 hypothetical protein YP_001900358.1 KEGG: rso:RSc2523 putative transmembrane protein YP_001900359.1 PFAM: manganese and iron superoxide dismutase; KEGG: rso:RSc2526 probable superoxide dismutase [Fe] protein YP_001900360.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_001900361.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: rso:RSc2528 probable biopolymer transport ExbB-like transmembrane protein YP_001900362.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rso:RSc2529 probable biopolymer transport ExbD-related transmembrane protein YP_001900363.1 Transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_001900364.1 PFAM: protein of unknown function DUF343; KEGG: rso:RSc2531 hypothetical protein YP_001900365.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_001900366.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001900367.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc2534 probable 3-hydroxyacyl-CoA dehydrogenase type II oxidoreductase protein YP_001900368.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc2537 probable transcription regulator transcription regulator protein YP_001900369.1 PFAM: Bile acid:sodium symporter; KEGG: rso:RSc2538 probable lipoprotein transmembrane YP_001900370.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bxe:Bxe_A0957 putative acetyltransferase YP_001900371.1 PFAM: cell wall hydrolase/autolysin; KEGG: rso:RSc2539 probable N-acetylmuramoyl-L-alanine amidase AmiC precursor protein YP_001900372.1 PFAM: protein of unknown function UPF0079; KEGG: rso:RSc2540 hypothetical protein YP_001900373.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: rso:RSc2541 putative iron-sulfur 4Fe-4S ferredoxin protein YP_001900374.1 KEGG: rso:RSc2542 putative lipoprotein transmembrane YP_001900375.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: rso:RSc2543 probable methylated-DNA--protein-cysteine methyltransferase YP_001900376.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_001900377.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rso:RSc2545 hypothetical protein YP_001900378.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_001900379.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cvi:CV_2101 probable transcriptional regulator, AraC family YP_001900380.1 PFAM: peptidase S45 penicillin amidase; KEGG: rso:RSc2547 probable aculeacin A acylase transmembrane protein YP_001900381.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_001900382.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_001900383.1 PFAM: protein of unknown function DUF1255; KEGG: rso:RSc2552 hypothetical protein YP_001900384.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis YP_001900385.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_001900386.1 KEGG: rso:RSc2555 hypothetical protein YP_001900387.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001900388.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: rso:RSc2557 probable MVIN_ECOLI homolog transmembrane protein YP_001900389.1 KEGG: rso:RSc2558 hypothetical protein YP_001900390.1 PFAM: SNARE associated Golgi protein; KEGG: rso:RSc2559 probable DedA DSG-1 protein transmembrane YP_001900391.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_001900392.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_001900393.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSc2565 putative acetyltransferase protein YP_001900394.1 KEGG: rso:RSc2567 hypothetical protein YP_001900395.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: rso:RSc2568 probable alkylated DNA repair protein YP_001900396.1 PFAM: HhH-GPD family protein; KEGG: rso:RSc2569 probable DNA-3-methyladenine glycosylase protein YP_001900397.1 TIGRFAM: periplasmic nitrate reductase, NapE protein; PFAM: periplasmic nitrate reductase NapE; KEGG: rme:Rmet_4065 periplasmic nitrate reductase NapE YP_001900398.1 PFAM: NapD family protein; KEGG: reu:Reut_B4762 NapD YP_001900399.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC YP_001900400.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: reu:Reut_B4764 nitrate reductase cytochrome c-type subunit (NapB) YP_001900401.1 TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: rme:Rmet_4061 periplasmic nitrate reductase C-type cytochrome, NapC/NirT YP_001900402.1 KEGG: reu:Reut_B4766 heme exporter protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase YP_001900403.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: reu:Reut_B4767 cytochrome c-type biogenesis protein CcmB YP_001900404.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: reu:Reut_B4768 cytochrome c-type biogenesis protein CcmC YP_001900406.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane YP_001900407.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: reu:Reut_B4770 cytochrome c-type biogenesis protein CcmF YP_001900408.1 TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: reu:Reut_B4771 periplasmic protein thiol:disulfide oxidoreductase DsbE YP_001900409.1 PFAM: cytochrome C biogenesis protein; KEGG: reu:Reut_B4772 cytochrome c biogenesis protein YP_001900410.1 KEGG: reu:Reut_B4773 TPR repeat; TIGRFAM: cytochrome c-type biogenesis protein CcmI; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001900411.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: rso:RSc2570 probable ADA regulatory of adaptative response contains: methylated-DNA--protein-cysteine methyltransferase O-6-methylguanine-DNA transcription regulator YP_001900412.1 KEGG: rso:RSc2572 probable lipoprotein YP_001900413.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001900414.1 PFAM: protein of unknown function UPF0118; KEGG: rso:RSc2624 probable permease transmembrane transport protein YP_001900415.1 KEGG: rso:RSc2625 hypothetical protein YP_001900416.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: rso:RSc2626 putative hydrolase protein YP_001900417.1 KEGG: rso:RSc2627 probable polynucleotide adenylyltransferase protein; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region YP_001900418.1 KEGG: rso:RSc2628 probable 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase protein; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_001900419.1 KEGG: rso:RSc2629 putative deoxyguanosine kinase (dGuo kinase) (DGK) protein YP_001900420.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_001900421.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2631 probable transmembrane ABC transporter protein YP_001900422.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2632 probable ATP-binding ABC transporter protein YP_001900423.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; KEGG: rso:RSc2633 putative para-aminobenzoate synthetase component I protein YP_001900424.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_001900425.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_001900426.1 KEGG: reh:H16_A1139 outer membrane phospholipase A YP_001900427.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: rso:RSc2636 putative regulator of nucleoside diphosphate kinase transcription regulator protein YP_001900428.1 KEGG: rso:RSc2638 putative thioredoxin protein YP_001900429.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_001900430.1 KEGG: rso:RSc2641 putative transmembrane protein YP_001900431.1 PFAM: RNA-binding S4 domain protein; KEGG: rso:RSc2642 putative heat shock protein 15 YP_001900432.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_001900433.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_001900434.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate YP_001900435.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_001900436.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_001900437.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: rso:RSc2648 probable histidine utilization repressor transcription regulator protein YP_001900438.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A4207 ABC taurine transporter, inner membrane subunit YP_001900439.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bur:Bcep18194_A6226 ABC taurine transporter, ATPase subunit YP_001900440.1 KEGG: bmu:Bmul_0419 taurine ABC transporter, periplasmic binding protein; TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3 YP_001900441.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_001900442.1 catalyzes the phosphorylation of NAD to NADP YP_001900443.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rso:RSc2651 probable DNA repair protein YP_001900444.1 KEGG: rso:RSc2652 probable lipoprotein YP_001900445.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: rso:RSc2653 putative extracellular protease signal peptide protein YP_001900446.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: rso:RSc2654 probable serine protease protein YP_001900447.1 KEGG: rso:RSc2655 probable transmembrane protein YP_001900448.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_001900449.1 KEGG: rso:RSc2657 probable transmembrane protein YP_001900450.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rso:RSc2658 putative nitrilase protein YP_001900451.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: rso:RSc2659 probable TldD protein YP_001900452.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_001900453.1 PFAM: MscS Mechanosensitive ion channel; KEGG: rso:RSc2662 probable transmembrane protein YP_001900454.1 TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: rso:RSc2663 hypothetical protein YP_001900455.1 PFAM: FAD linked oxidase domain protein; KEGG: rso:RSc2664 putative D-lactate dehydrogenase (cytochrome) oxidoreductase protein YP_001900456.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc2665 probable transcription regulator protein YP_001900457.1 PFAM: FAD linked oxidase domain protein; KEGG: rso:RSc2666 probable glycolate oxidase (FAD-linked subunit) oxidoreductase protein YP_001900458.1 PFAM: FAD linked oxidase domain protein; KEGG: rso:RSc2667 glycolate oxidase FAD binding subunit YP_001900459.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: rso:RSc2668 glycolate oxidase iron-sulfur subunit YP_001900460.1 PFAM: LrgA family protein; KEGG: rso:RSc2669 probable transmembrane protein YP_001900461.1 PFAM: LrgB family protein; KEGG: rso:RSc2670 probable transmembrane protein YP_001900462.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rso:RSc2671 hypothetical protein YP_001900463.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: rso:RSc2672 hypothetical protein YP_001900464.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: rso:RSc2673 putative repressor transcription regulator protein YP_001900465.1 PFAM: glutathione peroxidase; KEGG: rso:RSc2674 putative glutathione peroxidase protein YP_001900466.1 KEGG: rso:RSc2675 putative type 4 fimbrial biogenesis PilY1-related protein signal peptide YP_001900467.1 KEGG: rso:RSc2676 probable transmembrane protein YP_001900468.1 KEGG: rso:RSc2677 putative type 4 fimbrial biogenesis PilW-related protein transmembrane YP_001900469.1 KEGG: rso:RSc2678 probable type 4 fimbrial biogenesis related transmembrane protein YP_001900470.1 KEGG: rso:RSc2679 putative type 4 fimbrial pilin related transmembrane protein YP_001900471.1 KEGG: rso:RSc2680 probable type 4 fimbrial biogenesis transmembrane protein YP_001900472.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: rso:RSc2681 putative twitching mobility protein transport fimbria YP_001900473.1 KEGG: rso:RSc2682 probable twitching mobility protein transport fimbria; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_001900474.1 PFAM: alanine racemase domain protein; KEGG: rso:RSc2683 hypothetical protein YP_001900475.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_001900476.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway YP_001900477.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: aav:Aave_3132 catalase/peroxidase HPI YP_001900478.1 PFAM: Ferritin Dps family protein; KEGG: rso:RSc2687 putative DNA protection during starvation or oxydative stress transcription regulator protein YP_001900479.1 KEGG: rso:RSc2688 probable transmembrane protein YP_001900481.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: bch:Bcen2424_5220 AAA ATPase, central domain protein YP_001900483.1 PFAM: metallophosphoesterase; KEGG: mms:mma_3037 metallophosphoesterase YP_001900484.1 KEGG: tth:TTC1428 hypothetical protein YP_001900486.1 KEGG: mla:Mlab_1682 hypothetical protein YP_001900487.1 KEGG: xac:XAC2421 hypothetical protein YP_001900488.1 KEGG: pca:Pcar_0116 hypothetical protein YP_001900489.1 KEGG: tcx:Tcr_1645 hypothetical protein YP_001900490.1 PFAM: TniB family protein; KEGG: asa:ASA_1044 TniB YP_001900491.1 KEGG: asa:ASA_1043 TniA transposase YP_001900492.1 PFAM: TnsA endonuclease; KEGG: pca:Pcar_0126 hypothetical protein YP_001900493.1 PFAM: protein of unknown function DUF156; KEGG: bte:BTH_II0391 uncharacterized BCR, COG1937 family YP_001900494.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bte:BTH_II0390 cation efflux system protein YP_001900495.1 KEGG: nha:Nham_4399 hypothetical protein YP_001900496.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: reu:Reut_B5170 cation efflux protein YP_001900497.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rme:Rmet_5322 periplasmic sensor signal transduction histidine kinase YP_001900498.1 PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: rme:Rmet_5323 two component transcriptional regulator, LuxR family YP_001900499.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rme:Rmet_5319 heavy metal efflux pump CzcA YP_001900500.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rme:Rmet_5320 secretion protein HlyD YP_001900501.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rme:Rmet_5321 RND efflux system, outer membrane lipoprotein, NodT YP_001900502.1 KEGG: pnu:Pnuc_1326 hypothetical protein YP_001900504.1 PFAM: natural resistance-associated macrophage protein; KEGG: rso:RSp0027 putative manganese transport transmembrane protein YP_001900505.1 KEGG: rso:RS02001 hypothetical protein YP_001900506.1 PFAM: Carbohydrate-selective porin OprB; KEGG: rme:Rmet_0352 carbohydrate-selective porin OprB YP_001900507.1 PFAM: sodium/calcium exchanger membrane region; KEGG: cvi:CV_2442 probable cation antiporter YP_001900508.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc2690 probable hydrogen peroxide-inducible genes activator transcription regulator protein YP_001900509.1 PFAM: metallophosphoesterase; KEGG: dar:Daro_3826 metallophosphoesterase YP_001900510.1 catalyzes branch migration in Holliday junction intermediates YP_001900511.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_001900512.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_001900513.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_001900514.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_001900515.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_001900516.1 PFAM: YceI family protein; KEGG: rso:RSc2717 probable signal peptide protein YP_001900517.1 PFAM: YceI family protein; KEGG: rso:RSc2718 probable signal peptide protein YP_001900518.1 PFAM: cytochrome B561; KEGG: rso:RSc2719 putative cytochrome b-561 transmembrane protein YP_001900519.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001900520.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc2721 putative glutathione S-transferase protein YP_001900521.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: rso:RSc2722 putative signal peptide protein YP_001900522.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001900523.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc2724 hypothetical protein YP_001900524.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: rso:RSc2730 probable NAD(P) transhydrogenase (alpha subunit part 1) oxidoreductase protein YP_001900525.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_001900526.1 KEGG: rme:Rmet_2964 NAD/NADP transhydrogenase alpha subunit-like protein YP_001900527.1 PFAM: NAD(P) transhydrogenase beta subunit; KEGG: rso:RSc2733 probable transmembrane NADP transhydrogenase (beta subunit) oxidoreductase protein YP_001900528.1 PFAM: response regulator receiver; KEGG: rso:RSc2734 probable response regulator transcription regulator protein YP_001900529.1 KEGG: rso:RSc2735 regulatory protein YP_001900530.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RSc2736 transmembrane sensor histidine kinase transcription regulator protein YP_001900531.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RSc2737 two component response regulator transcription regulator protein YP_001900532.1 PFAM: response regulator receiver; KEGG: rso:RSc2738 probable response regulator transcription regulator protein YP_001900533.1 PFAM: putative RNA methylase; THUMP domain protein; KEGG: rso:RSc2739 hypothetical protein YP_001900534.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc2740 probable transmembrane protein YP_001900535.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_001900536.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_001900537.1 PFAM: Rare lipoprotein B; KEGG: rso:RSc2743 putative lipoprotein B precursor transmembrane YP_001900538.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001900539.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_001900540.1 PFAM: SmpA/OmlA domain protein; KEGG: rso:RSc2746 putative lipoprotein transmembrane YP_001900541.1 PFAM: ferric-uptake regulator; KEGG: rso:RSc2747 probable ferric uptake transcriptional repressor transcription regulator protein YP_001900542.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc2748 transcription regulator protein YP_001900543.1 KEGG: reu:Reut_A2840 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001900544.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_001900545.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rso:RSc2751 putative galactonate dehydratase protein YP_001900546.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism YP_001900547.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc2753 short chain dehydrogenase YP_001900548.1 PFAM: Aldose 1-epimerase; KEGG: rso:RSc2754 hypothetical protein YP_001900549.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; SMART: low-density lipoprotein receptor YWTD repeat; KEGG: rso:RSc2755 hypothetical protein YP_001900550.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_001900551.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_001900552.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSc2758 probable L-arabinose-binding periplasmic (PBP) ABC transporter protein YP_001900553.1 KEGG: rso:RSc2759 probable 2-dehydro-3-deoxygalactonokinase protein YP_001900554.1 PFAM: porin Gram-negative type; KEGG: rso:RSc2760 putative porin signal peptide protein YP_001900555.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc2761 probable transcription regulator protein YP_001900556.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rso:RSc2762 hypothetical protein YP_001900557.1 PFAM: protein of unknown function DUF558; KEGG: rso:RSc2763 hypothetical protein YP_001900558.1 PFAM: protein of unknown function DUF937; KEGG: rso:RSc2764 hypothetical protein YP_001900559.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4926 transcriptional regulator, LysR family YP_001900560.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_001900561.1 PFAM: dihydrodipicolinate synthetase; KEGG: aav:Aave_2247 dihydrodipicolinate synthetase YP_001900562.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bam:Bamb_4922 galactose 1-dehydrogenase YP_001900563.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bte:BTH_II1628 L-arabinose ABC transporter, periplasmic L-arabinose-binding protein YP_001900564.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_001900565.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_001900566.1 KEGG: rso:RSc2765 hypothetical protein YP_001900567.1 PFAM: guanine-specific ribonuclease N1 and T1; KEGG: rso:RSc2766 probable guanyl-specific ribonuclease precursor signal peptide protein YP_001900568.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_001900569.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP YP_001900570.1 PFAM: phosphatidylglycerophosphatase A; KEGG: rso:RSc2769 probable phosphatidyl-glycerophosphatase hydrolase transmembrane protein YP_001900571.1 PFAM: CinA domain protein; KEGG: rso:RSc2770 hypothetical protein YP_001900572.1 KEGG: rso:RSc2772 putative metal transport transmembrane protein YP_001900573.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_001900574.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: rso:RSc2774 probable magnesium and cobalt transport transmembrane protein YP_001900575.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan YP_001900576.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_001900577.1 TIGRFAM: TonB family protein; KEGG: rso:RSc2778 hypothetical protein YP_001900578.1 PFAM: ribonuclease II; KEGG: rso:RSc2779 hypothetical protein YP_001900579.1 PFAM: Chorismate lyase; KEGG: rso:RSc2780 hypothetical protein YP_001900580.1 PFAM: protein of unknown function UPF0227; KEGG: rso:RSc2781 hypothetical protein YP_001900581.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rso:RSc2782 probable UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase transmembrane protein YP_001900582.1 KEGG: rso:RSc2783 hypothetical protein YP_001900583.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: rso:RSc2784 putative thioredoxin-related transmembrane protein YP_001900585.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001900586.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_001900587.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_001900588.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_001900589.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: rso:RSc2789 probable transmembrane protein YP_001900590.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_001900591.1 PFAM: PfkB domain protein; KEGG: rso:RSc2791 putative sugar kinase transferase protein YP_001900592.1 PFAM: 17 kDa surface antigen; KEGG: rso:RSc2792 putative outer membrane lipoprotein transmembrane YP_001900593.1 KEGG: rso:RSc2793 probable histone H1 protein YP_001900594.1 KEGG: rso:RSc2796 putative hemagglutinin-related transmembrane protein YP_001900595.1 KEGG: rso:RSc2797 putative hemagglutinin-related transmembrane protein YP_001900596.1 KEGG: rso:RSc2798 hypothetical signal peptide protein YP_001900597.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: rso:RSc2799 putative methyl-accepting chemotaxis transmembrane protein YP_001900598.1 KEGG: rso:RSc2800 hypothetical protein YP_001900599.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc2802 probable transmembrane protein YP_001900600.1 KEGG: rso:RSc2803 hypothetical protein YP_001900601.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001900602.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001900603.1 KEGG: reu:Reut_B4286 hypothetical protein YP_001900604.1 KEGG: reh:H16_B1167 hypothetical protein YP_001900605.1 KEGG: reu:Reut_B4287 twin-arginine translocation pathway signal; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756 YP_001900606.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: rso:RSc2806 N-acetyl-anhydromuranmyl-L-alanine amidase YP_001900607.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: rso:RSc2807 probable response regulator transcription regulator protein YP_001900608.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: rso:RSc2808 probable transmembrane sensor histidine kinase transcription regulator protein YP_001900609.1 KEGG: rso:RSc2809 hypothetical protein YP_001900610.1 PFAM: cytochrome c assembly protein; KEGG: rso:RSc2810 probable transmembrane protein YP_001900611.1 KEGG: rso:RSc2811 putative signal recognition particle protein (fifty-four homolog) (P48); TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001900612.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively YP_001900613.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: rso:RSc2813 probable transmembrane protein YP_001900614.1 KEGG: rso:RSc2814 hypothetical protein; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit YP_001900615.1 PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc2815 hypothetical signal peptide protein YP_001900616.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001900617.1 hydrolyzes diadenosine polyphosphate YP_001900618.1 PFAM: Protein of unknown function CNP1-like; KEGG: rso:RSc2818 putative lipoprotein YP_001900619.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001900620.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_001900621.1 involved in the peptidyltransferase reaction during translation YP_001900622.1 PFAM: ribosomal protein L21; KEGG: rso:RSc2822 50S ribosomal protein L21 YP_001900623.1 PFAM: Polyprenyl synthetase; KEGG: rso:RSc2823 probable octaprenyl-diphosphate synthase (octaprenyl pyrophosphate synthase) protein YP_001900624.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rso:RSc2824 probable transmembrane protein YP_001900625.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: rso:RSc2825 probable type IV pilus assembly protein YP_001900626.1 PFAM: type II secretion system protein; KEGG: rso:RSc2826 probable fimbrial assembly transmembrane protein YP_001900627.1 PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: rso:RSc2827 probable type 4 prepilin peptidase bifunctionnal: leader peptidase and N-methyltransferase transmembrane protein YP_001900628.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_001900629.1 PFAM: protein of unknown function DUF1342; KEGG: rso:RSc2829 hypothetical protein YP_001900630.1 PFAM: protein of unknown function DUF329; KEGG: rso:RSc2830 hypothetical protein YP_001900631.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc2831 probable mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) YP_001900632.1 PFAM: protein of unknown function DUF815; SMART: AAA ATPase; KEGG: rso:RSc2832 hypothetical protein YP_001900633.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_001900634.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_001900635.1 PFAM: Peptidase M23; KEGG: rso:RSc2835 putative transmembrane protein YP_001900636.1 KEGG: rso:RSc2836 hypothetical protein YP_001900637.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_001900638.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RSc2838 probable type 2 peroxiredoxin protein YP_001900639.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_001900640.1 PFAM: cell division protein FtsA; KEGG: rso:RSc2840 probable cell division protein FtsA YP_001900641.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: rso:RSc2841 putative cell division transmembrane protein YP_001900642.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_001900643.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001900644.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_001900645.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: rso:RSc2845 probable cell division FtsW transmembrane protein YP_001900646.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_001900647.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001900648.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rso:RSc2848 probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase protein YP_001900649.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_001900650.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: rso:RSc2850 probable penicillin-binding 3 precursor PBP-3 transmembrane protein YP_001900651.1 PFAM: cell division protein FtsL; KEGG: rso:RSc2851 probable cell division FtsL transmembrane protein YP_001900652.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: rso:RSc2852 S-adenosyl-methyltransferase MraW YP_001900653.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_001900654.1 KEGG: rso:RSc2854 hypothetical protein YP_001900655.1 PFAM: porin Gram-negative type; KEGG: rso:RSc2855 putative outer membrane porin signal peptide protein YP_001900656.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RSc2856 putative metabolite transport transmembrane protein YP_001900657.1 PFAM: Class I peptide chain release factor; KEGG: xom:XOO_0318 hypothetical protein YP_001900658.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: reu:Reut_B5210 HylII YP_001900659.1 activates fatty acids by binding to coenzyme A YP_001900660.1 KEGG: rso:RSc2858 putative zinc protease protein YP_001900661.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rso:RSc2859 hypothetical oxidoreductase protein YP_001900662.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSc2860 putative transcription regulation repressor transcription regulator protein YP_001900663.1 TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: rso:RSc2861 probable multiphosphoryl transfer protein MTP YP_001900664.1 KEGG: rso:RSc2862 probable 1-phosphofructokinase protein; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein YP_001900665.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: rso:RSc2863 probable PTS system, fructose-specific IIBC component (EIIBC-FRU) (fructose-permease IIBC component) transmembrane protein YP_001900666.1 PFAM: Extracellular ligand-binding receptor; KEGG: rso:RSc2864 probable Leu/Ile/Val-binding signal peptide protein YP_001900667.1 TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_2527 acetylornithine deacetylase (ArgE) YP_001900668.1 KEGG: rso:RSc2871 putative hippurate hydrolase protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001900669.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001900670.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001900671.1 TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: rso:RSc2874 probable phenylacetic acid degradation protein YP_001900672.1 TIGRFAM: phenylacetate-CoA ligase; KEGG: rso:RSc2875 probable phenylacetyl-CoA-ligase protein YP_001900673.1 PFAM: MltA domain protein; 3D domain protein; KEGG: rso:RSc2876 putative membrane-bound lytic murein transglycosylase A transmembrane protein YP_001900674.1 KEGG: rso:RSc2877 probable transmembrane protein YP_001900675.1 protein associated with Co2+ and Mg2+ efflux YP_001900676.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_001900677.1 TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rso:RSc2880 probable phosphoglycolate phosphatase protein YP_001900678.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_001900679.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_001900680.1 KEGG: rso:RSc2883 putative signal peptide protein YP_001900681.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001900682.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_001900683.1 PFAM: adenylate cyclase; KEGG: rso:RSc2886 hypothetical protein YP_001900684.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_001900685.1 PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: rso:RSc2889 probable transmembrane protein YP_001900686.1 PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: rso:RSc2890 hypothetical protein YP_001900687.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rso:RSc2891 putative oxidoreductase protein YP_001900688.1 KEGG: rso:RSc2892 probable thiol:disulfide interchange protein YP_001900689.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rso:RSc2893 hypothetical protein YP_001900690.1 KEGG: rso:RSc2894 hypothetical protein YP_001900691.1 KEGG: rso:RSc2895 hypothetical signal peptide protein YP_001900692.1 PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc2896 hypothetical protein YP_001900693.1 KEGG: rso:RSc2897 hypothetical protein YP_001900694.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001900695.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: psa:PST_4182 phytochrome family protein, putative YP_001900696.1 PFAM: response regulator receiver; KEGG: ppf:Pput_3340 response regulator receiver protein YP_001900697.1 KEGG: bxe:Bxe_A2317 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001900698.1 KEGG: rso:RSc2899 hypothetical protein YP_001900699.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_001900700.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001900701.1 KEGG: rso:RSc2902 probable lipoprotein YP_001900702.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; KEGG: rso:RSc2903 probable methyltransferase protein YP_001900703.1 KEGG: rme:Rmet_0253 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (Reverse transcriptase); HNH endonuclease; Group II intron maturase-specific domain protein; SMART: HNH nuclease YP_001900704.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: rso:RSc2904 hypothetical protein YP_001900705.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate YP_001900706.1 KEGG: rso:RSc2906 hypothetical protein YP_001900707.1 KEGG: rso:RSc2907 hypothetical signal peptide protein YP_001900708.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_001900709.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_001900710.1 KEGG: rso:RSc2910 probable signal peptide protein YP_001900711.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rso:RSc2911 hypothetical protein YP_001900712.1 SMART: zinc finger CDGSH-type domain protein; KEGG: rso:RSc2912 hypothetical protein YP_001900713.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_001900714.1 TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: rso:RSc2914 probable transmembrane cytochrome o ubiquinol oxidase (subunit IV) oxidoreductase protein YP_001900715.1 TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: rso:RSc2915 probable transmembrane cytochrome o ubiquinol oxidase (subunit III) oxidoreductase protein YP_001900716.1 KEGG: rso:RSc2916 probable transmembrane cytochrome o ubiquinol oxidase (subunit I) oxidoreductase protein; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_001900717.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: rso:RSc2917 probable transmembrane cytochrome o ubiquinol oxidase (subunit II) oxidoreductase protein YP_001900718.1 PFAM: natural resistance-associated macrophage protein; KEGG: rso:RSp0027 putative manganese transport transmembrane protein YP_001900719.1 KEGG: rso:RS02001 hypothetical protein YP_001900720.1 PFAM: Carbohydrate-selective porin OprB; KEGG: reu:Reut_A0411 hypothetical protein YP_001900721.1 KEGG: bch:Bcen2424_1354 hypothetical protein YP_001900723.1 PFAM: plasmid maintenance system killer; KEGG: xfa:XF1709 hypothetical protein YP_001900724.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: xfa:XF1708 hypothetical protein YP_001900725.1 KEGG: xfa:XF1707 hypothetical protein YP_001900726.1 KEGG: neu:NE2527 restriction enzyme type I helicase subunits and related helicases; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases YP_001900727.1 KEGG: ajs:Ajs_3607 restriction modification system, type I YP_001900728.1 PFAM: UvrD/REP helicase; KEGG: sbm:Shew185_4279 UvrD/REP helicase YP_001900729.1 PFAM: SMC domain protein; KEGG: sbn:Sbal195_4418 ATP-dependent endonuclease of the OLD family YP_001900730.1 PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: ajs:Ajs_3609 N-6 DNA methylase YP_001900731.1 KEGG: dar:Daro_0796 hypothetical protein YP_001900732.1 PFAM: N-6 DNA methylase; KEGG: ajs:Ajs_3610 N-6 DNA methylase YP_001900733.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: bch:Bcen2424_0140 addiction module toxin, RelE/StbE family YP_001900734.1 KEGG: bch:Bcen2424_0139 hypothetical protein YP_001900737.1 KEGG: bur:Bcep18194_A4982 hypothetical protein YP_001900739.1 KEGG: pol:Bpro_2508 hypothetical protein YP_001900742.1 KEGG: pde:Pden_3127 peptidase C24, Calicivirus polyprotein ORF 1 YP_001900743.1 KEGG: bxe:Bxe_A3649 hypothetical protein YP_001900744.1 KEGG: xcv:XCV1966 hypothetical protein YP_001900745.1 KEGG: bam:Bamb_6625 TrbL/VirB6 plasmid conjugal transfer protein YP_001900747.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: nha:Nham_4565 conjugal transfer protein TrbJ YP_001900752.1 KEGG: bbr:BB0495 hypothetical protein YP_001900753.1 KEGG: abo:ABO_2067 hypothetical protein YP_001900755.1 PFAM: integrase family protein; KEGG: bch:Bcen2424_0446 phage integrase family protein YP_001900756.1 PFAM: Stringent starvation protein B; KEGG: rso:RSc2925 ClpXP protease specificity-enhancing factor YP_001900757.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc2926 putative transcription modulator protein YP_001900758.1 PFAM: cytochrome c1; KEGG: rso:RSc2927 putative cytochrome c1 precursor transmembrane protein YP_001900759.1 PFAM: Cytochrome b/b6 domain; KEGG: rso:RSc2928 putative cytochrome b subunit transmembrane protein YP_001900760.1 KEGG: rso:RSc2929 putative transmembrane ubiquinol-cytochrome c reductase (iron-sulfur subunit) oxidoreductase protein; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein YP_001900761.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_001900762.1 PFAM: protein of unknown function DUF34; KEGG: rso:RSc2931 hypothetical protein YP_001900763.1 KEGG: rso:RSc2932 probable HtrA-like serine protease signal peptide protein; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001900764.1 PFAM: porin Gram-negative type; KEGG: rso:RSc2933 putative porin signal peptide protein YP_001900765.1 PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc2934 hypothetical protein YP_001900766.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSc2935 putative response regulator transcription regulator protein YP_001900767.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: rso:RSc2936 putative transmembrane sensor kinase transcription regulator protein YP_001900768.1 PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc2937 putative periplasmic iron-binding signal peptide protein YP_001900769.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2938 putative transmembrane ABC transporter protein YP_001900770.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2939 probable ATP-binding ABC transporter protein YP_001900771.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: rso:RSc2940 putative sec-independent translocase protein TatC transmembrane YP_001900772.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: rso:RSc2941 sec-independent translocase YP_001900773.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_001900774.1 KEGG: rso:RSc2943 probable transmembrane protein YP_001900775.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_001900776.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_001900777.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001900778.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_001900779.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001900780.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: rso:RSc2949 probable transmembrane protein YP_001900781.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_001900782.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001900783.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_001900784.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_001900785.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001900786.1 PFAM: BolA family protein; KEGG: rso:RSc2954 hypothetical protein YP_001900787.1 PFAM: ABC-2 type transporter; KEGG: rso:RSc2955 probable transmembrane protein YP_001900788.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2956 probable ATP-binding ABC transporter protein YP_001900789.1 KEGG: rso:RSc2957 putative signal peptide protein YP_001900790.1 PFAM: toluene tolerance family protein; KEGG: rso:RSc2958 probable signal peptide protein YP_001900791.1 PFAM: VacJ family lipoprotein; KEGG: rso:RSc2959 probable lipoprotein precursor (VacJ) transmembrane YP_001900792.1 PFAM: Mammalian cell entry related domain protein; KEGG: rso:RSc2960 probable signal peptide protein YP_001900793.1 PFAM: protein of unknown function DUF140; KEGG: rso:RSc2961 probable transmembrane protein YP_001900794.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2962 probable ATP-binding ABC transporter protein YP_001900795.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc2963 hypothetical protein YP_001900796.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_001900797.1 PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rso:RSc2965 probable glutamate synthase (large subunit) oxidoreductase protein YP_001900798.1 PFAM: protein of unknown function DUF1568; KEGG: rso:RSc2966 hypothetical protein YP_001900799.1 PFAM: OmpW family protein; KEGG: rso:RSc2967 probable outer membrane signal peptide protein YP_001900800.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_001900801.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_001900802.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_001900803.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: rso:RSc2971 probable fimbrial type-4 assembly signal peptide protein YP_001900804.1 PFAM: Pilus assembly protein PilP; KEGG: rso:RSc2972 probable fimbrial type-4 assembly lipoprotein YP_001900805.1 PFAM: Pilus assembly protein PilO; KEGG: rso:RSc2973 probable fimbrial type-4 assembly membrane transmembrane protein YP_001900806.1 PFAM: Fimbrial assembly family protein; KEGG: rso:RSc2974 probable fimbrial type-4 assembly membrane transmembrane protein YP_001900807.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: rso:RSc2975 probable fimbrial type-4 assembly protein YP_001900808.1 KEGG: rso:RSc2976 probable penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001900809.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly YP_001900810.1 KEGG: rso:RSc2978 probable proline-rich transmembrane protein YP_001900811.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rso:RSc2979 probable diaminopimelate decarboxylase protein YP_001900812.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_001900813.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_001900814.1 KEGG: rso:RSc2982 probable transmembrane protein YP_001900815.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rso:RSc2983 probable RNA polymerase sigma-E factor (sigma-24) transcription regulator protein YP_001900816.1 PFAM: Secreted repeat of unknown function; KEGG: rso:RSc2984 probable transmembrane protein YP_001900817.1 TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; KEGG: rso:RSc2985 putative transmembrane cytochrome c-type biogenesis transmembrane protein YP_001900818.1 PFAM: ResB family protein; KEGG: rso:RSc2986 putative cytochrome c-type biogenesis transmembrane protein YP_001900819.1 PFAM: cytochrome c class I; KEGG: rso:RSc2987 probable oxidoreductase cytochrome c-type signal peptide protein YP_001900820.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001900821.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001900822.1 PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: rso:RSc2990 probable thiol:disulfide interchange transmembrane protein YP_001900823.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: rso:RSc2991 probable periplasmic divalent cation tolerance protein YP_001900824.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001900825.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001900826.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001900827.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001900828.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001900829.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_001900830.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001900831.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001900832.1 late assembly protein YP_001900833.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001900834.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001900835.1 binds 5S rRNA along with protein L5 and L25 YP_001900836.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001900837.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001900838.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_001900839.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001900840.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001900841.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001900842.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_001900843.1 one of the stabilizing components for the large ribosomal subunit YP_001900844.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001900845.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_001900846.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001900847.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001900848.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001900849.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001900850.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001900851.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001900852.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001900853.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001900854.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001900855.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001900856.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001900857.1 PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr2264 probable antibiotic resistance protein YP_001900858.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_3497 transcriptional regulator, LysR family YP_001900859.1 KEGG: rso:RSc3025 probable ATP-dependent DNA helicase protein; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases YP_001900860.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rso:RSc3026 hypothetical protein YP_001900861.1 KEGG: rso:RSc3027 probable signal peptide protein YP_001900862.1 KEGG: rso:RSc3028 putative signal peptide protein YP_001900863.1 KEGG: rso:RSc3029 putative signal peptide protein YP_001900864.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: rso:RSc3030 putative signal peptide protein YP_001900865.1 PFAM: protein of unknown function DUF1175; KEGG: rso:RSc3031 hypothetical protein YP_001900866.1 KEGG: rso:RSc3032 hypothetical protein YP_001900867.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001900868.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001900869.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001900870.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001900871.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001900872.1 binds directly to 23S ribosomal RNA YP_001900873.1 Modulates Rho-dependent transcription termination YP_001900874.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_001900875.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001900876.1 PFAM: transposase IS66; KEGG: bxe:Bxe_B1865 transposase IS66 family YP_001900877.1 PFAM: IS66 Orf2 family protein; KEGG: ajs:Ajs_2917 IS66 Orf2 family protein YP_001900878.1 KEGG: bxe:Bxe_B1867 hypothetical protein YP_001900879.1 PFAM: CHAD domain containing protein; KEGG: rso:RSc3043 hypothetical protein YP_001900880.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: rso:RSc3044 probable glycerol-3-phosphate regulon repressor transcription regulator protein YP_001900881.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_001900882.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rso:RSc3046 putative sugar-phosphate ATP-binding ABC transporter protein YP_001900883.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc3047 probable ATP-binding ABC transporter protein YP_001900884.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc3048 probable sugar-phosphate transmembrane ABC transporter protein YP_001900885.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc3049 probable transmembrane ABC transporter protein YP_001900886.1 KEGG: rso:RSc3050 probable transmembrane protein YP_001900887.1 KEGG: rso:RSc3051 hypothetical signal peptide protein YP_001900888.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: rso:RSc3052 probable ATP:glycerol 3-phosphotransferase protein YP_001900889.1 KEGG: rso:RSc3053 hypothetical signal peptide protein YP_001900890.1 PFAM: protein of unknown function DUF1415; KEGG: rso:RSc3054 hypothetical protein YP_001900891.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_001900892.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: rso:RSc3058 probable mannose-6-phosphate isomerase protein YP_001900893.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RSc3059 probable sugar transporter transmembrane protein YP_001900894.1 PFAM: Extracellular ligand-binding receptor; KEGG: rso:RSc3061 probable substrate-binding periplasmic (PBP) ABC transporter protein YP_001900895.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: rso:RSc3062 probable transcription regulator protein YP_001900896.1 KEGG: bvi:Bcep1808_4988 alpha/beta hydrolase-like protein YP_001900897.1 PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_4760 transcriptional regulator, XRE family YP_001900898.1 PFAM: PepSY-associated TM helix domain protein; KEGG: rso:RSc3067 probable transmembrane protein YP_001900899.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pol:Bpro_0662 transcriptional regulator, RpiR family YP_001900900.1 PFAM: porin Gram-negative type; KEGG: reh:H16_A0083 outer membrane protein (porin) YP_001900901.1 PFAM: MscS Mechanosensitive ion channel; KEGG: rso:RSc3068 probable transmembrane protein YP_001900902.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc3069 putative transporter transmembrane protein YP_001900903.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc3070 probable glutathione S-transferase protein YP_001900904.1 KEGG: rso:RSc3071 hypothetical protein YP_001900905.1 KEGG: rso:RSc3072 hypothetical protein YP_001900906.1 KEGG: rso:RSc3073 hypothetical protein YP_001900907.1 KEGG: rso:RSc3074 hypothetical protein YP_001900908.1 KEGG: bam:Bamb_3510 hypothetical protein YP_001900909.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rso:RSc3077 hypothetical protein YP_001900910.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: rso:RSc3078 probable response regulator transcription regulator protein YP_001900911.1 KEGG: rso:RSc3079 probable composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; extracellular solute-binding protein family 3 YP_001900912.1 KEGG: reh:H16_A3740 cyclohexanone monooxygenase YP_001900913.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reh:H16_A3741 short chain dehydrogenase YP_001900914.1 PFAM: alpha/beta hydrolase fold; KEGG: rme:Rmet_3600 alpha/beta hydrolase fold YP_001900915.1 KEGG: rme:Rmet_3601 FF domain protein YP_001900916.1 PFAM: regulatory protein MerR; KEGG: rso:RSc3080 probable transcription regulator protein YP_001900917.1 KEGG: rso:RSc3082 hypothetical protein YP_001900918.1 PFAM: protein of unknown function DUF811; KEGG: bxe:Bxe_A1322 putative exported lipoprotein YP_001900919.1 KEGG: rso:RSc3083 hypothetical signal peptide protein YP_001900920.1 PFAM: cytochrome c class I; KEGG: rso:RSc3084 probable transmembrane protein YP_001900921.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001900922.1 PFAM: High potential iron-sulfur protein; KEGG: rso:RSc3086 probable high potential iron-sulfur (HIPIP) signal peptide protein YP_001900923.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSc3087 probable response regulator transcription regulator protein YP_001900924.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc3088 putative signal peptide protein YP_001900925.1 PFAM: porin Gram-negative type; KEGG: rso:RSc3091 probable outer membrane porin signal peptide protein YP_001900926.1 KEGG: rso:RSc3092 putative signal peptide protein YP_001900927.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bxe:Bxe_B2226 xanthine dehydrogenase YP_001900928.1 PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: reu:Reut_B4506 molybdopterin dehydrogenase, FAD-binding:CO dehydrogenase flavoprotein, C-terminal YP_001900929.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: reu:Reut_B4505 twin-arginine translocation pathway signal YP_001900930.1 catalyzes the release of C-terminal glutamate residues from N-acylating moieties YP_001900931.1 PFAM: Domain of unknown function DUF1835; KEGG: rso:RSc3094 hypothetical protein YP_001900932.1 transport system that facilitates potassium-efflux YP_001900933.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: rso:RSc3097 putative NAD(P)H oxidoreductase (NAD(P)H dehydrogenase (quinone)) oxidoreductase protein YP_001900934.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSc3098 hypothetical protein YP_001900935.1 KEGG: rso:RSc3099 hypothetical signal peptide protein YP_001900938.1 KEGG: bur:Bcep18194_A5513 hypothetical protein YP_001900940.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rso:RSc3102 probable transcription regulator protein YP_001900941.1 KEGG: rso:RSc3103 probable 4-hydroxyphenylpyruvate dioxygenase oxidoreductase protein; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001900942.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: rso:RSc3104 putative calcium binding signal peptide protein YP_001900943.1 KEGG: rso:RSc3105 putative general secretion pathway related transmembrane protein YP_001900944.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: rso:RSc3106 putative general secretion pathway G transmembrane protein YP_001900945.1 TIGRFAM: general secretion pathway protein H; KEGG: rso:RSc3107 probable general secretory pathway H transmembrane protein YP_001900946.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: rso:RSc3108 probable general secretory pathway I transmembrane protein YP_001900947.1 KEGG: rso:RSc3109 probable general secretory pathway J transmembrane protein YP_001900948.1 PFAM: General secretion pathway protein K; KEGG: rso:RSc3110 probable general secretory pathway K transmembrane protein YP_001900949.1 PFAM: General secretion pathway L; KEGG: rso:RSc3111 probable general secretory pathway L transmembrane protein YP_001900950.1 PFAM: General secretion pathway M protein; KEGG: rso:RSc3112 probable general secretory pathway M transmembrane protein YP_001900951.1 KEGG: rso:RSc3113 probable general secretory pathway N transmembrane protein YP_001900952.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rso:RSc3114 probable general secretory pathway D transmembrane protein YP_001900953.1 KEGG: rso:RSc3115 probable general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_001900954.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: rso:RSc3116 probable general secretory pathway F transmembrane protein YP_001900955.1 KEGG: bte:BTH_II1692 hypothetical protein YP_001900956.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rso:RSc3119 probable transcription regulator protein YP_001900957.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_001900958.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates YP_001900959.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rso:RSc3131 D-lactate dehydrogenase YP_001900960.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: reh:H16_A3548 predicted HD phosphohydrolase YP_001900961.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: reu:Reut_A0894 cyclic nucleotide-binding YP_001900962.1 KEGG: rso:RSc3135 hypothetical protein YP_001900963.1 PFAM: porin Gram-negative type; KEGG: rso:RSc2933 putative porin signal peptide protein YP_001900964.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bxe:Bxe_B2906 two component transcriptional regulator, LuxR family YP_001900965.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rso:RSc3136 putative methyl-accepting chemotaxis transmembrane protein YP_001900966.1 KEGG: rso:RSc3137 hypothetical protein YP_001900968.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc3138 probable oxidoreductase protein YP_001900969.1 PFAM: regulatory protein MarR; KEGG: rso:RSc3139 putative transcription regulator protein YP_001900970.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bam:Bamb_2835 two component transcriptional regulator, LuxR family YP_001900971.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: rso:RSc3140 putative serine protease protein YP_001900972.1 KEGG: rso:RSc3141 putative lipoprotein transmembrane YP_001900973.1 PFAM: regulatory protein TetR; KEGG: bbr:BB2329 putative TetR-family transcriptional regulator YP_001900974.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbr:BB2330 probable membrane efflux protein YP_001900975.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: rso:RSc3142 putative transport transmembrane protein YP_001900976.1 KEGG: bch:Bcen2424_3160 diguanylate cyclase YP_001900977.1 KEGG: bvi:Bcep1808_1534 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001900978.1 PFAM: amino acid permease-associated region; KEGG: reu:Reut_B4004 amino acid permease-associated region YP_001900979.1 KEGG: bam:Bamb_6391 hypothetical protein YP_001900980.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth YP_001900981.1 PFAM: chaperonin Cpn10; KEGG: bmu:Bmul_5254 chaperonin Cpn10 YP_001900982.1 KEGG: bam:Bamb_6394 hypothetical protein YP_001900983.1 PFAM: heat shock protein Hsp20; KEGG: bmn:BMA10247_2615 heat shock protein, HSP20 family YP_001900984.1 PFAM: heat shock protein Hsp20; KEGG: bpd:BURPS668_3388 heat shock protein, HSP20 family YP_001900985.1 KEGG: bpl:BURPS1106A_3421 hypothetical protein YP_001900986.1 KEGG: bte:BTH_I0935 hypothetical protein YP_001900987.1 KEGG: bte:BTH_I0934 hypothetical protein YP_001900988.1 PFAM: peptidase C39 bacteriocin processing; KEGG: bxe:Bxe_A1024 putative peptidase YP_001900989.1 KEGG: bxe:Bxe_A1025 hypothetical protein YP_001900990.1 KEGG: bxe:Bxe_A1026 conserved hypothetical signal peptide protein YP_001900991.1 KEGG: bte:BTH_I0930 hypothetical protein YP_001900992.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bba:Bd0664 similar to lipase LipA YP_001900993.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: reu:Reut_B5694 ethyl tert-butyl ether degradation EthD YP_001900996.1 PFAM: regulatory protein MarR; transcriptional regulator PadR family protein; Penicillinase repressor; KEGG: rso:RS02614 putative transcription regulator protein YP_001900997.1 PFAM: OsmC family protein; KEGG: rso:RSp1107 probable organic hydroperoxide resistance protein YP_001900998.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rso:RS02616 probable lipase signal peptide protein YP_001900999.1 KEGG: rso:RSc0639 probable heat shock protein YP_001901001.1 KEGG: rso:RSc3434 hypothetical protein YP_001901002.1 KEGG: cte:CT1878 type I restriction system endonuclease YP_001901003.1 PFAM: 5'-Nucleotidase domain protein; KEGG: rso:RSc3253 probable sulfur oxidation signal peptide protein YP_001901004.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RSc3254 hypothetical protein YP_001901005.1 KEGG: rso:RSc3255 hypothetical protein YP_001901006.1 KEGG: rso:RSc3256 hypothetical protein YP_001901007.1 PFAM: Domain of unknown function DUF1791; KEGG: rso:RSc3257 hypothetical signal peptide protein YP_001901008.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: rso:RSc3258 hypothetical protein YP_001901009.1 KEGG: rso:RSc3259 hypothetical protein YP_001901010.1 PFAM: cytochrome c class I; KEGG: rso:RSc3260 probable cytochrome c transmembrane protein YP_001901011.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc3261 hypothetical protein YP_001901012.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: rso:RSc3262 probable sulfide dehydrogenase flavocytochrome c oxidoreductase protein YP_001901013.1 KEGG: rso:RSc3263 hypothetical signal peptide protein YP_001901014.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: rso:RSc3264 hypothetical signal peptide protein YP_001901015.1 PFAM: protein of unknown function UPF0102; KEGG: rso:RSc3265 hypothetical protein YP_001901016.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rso:RSc3266 hypothetical protein YP_001901017.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: rso:RSc3267 putative lipoprotein YP_001901018.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc3268 hypothetical protein YP_001901019.1 KEGG: rso:RSc3269 hypothetical protein YP_001901020.1 KEGG: rso:RSc3270 hypothetical protein YP_001901021.1 PFAM: arsenate reductase and related; KEGG: rso:RSc3271 putative arsenate reductase oxidoreductase protein YP_001901022.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rso:RSc3273 hypothetical protein YP_001901023.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_001901024.1 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_001901025.1 involved in the transport of C4-dicarboxylates across the membrane YP_001901026.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rso:RSc3276 probable transcription regulator protein YP_001901027.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: rso:RSc3277 hypothetical protein YP_001901028.1 KEGG: nfa:nfa48160 hypothetical protein YP_001901029.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc3280 probable transcription regulator protein YP_001901030.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate YP_001901031.1 KEGG: rso:RSc3282 probable hydroxypyruvate isomerase protein; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel YP_001901032.1 KEGG: rso:RSc3283 probable transmembrane 2-hydroxy-3-oxopropionate reductase oxidoreductase protein; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding YP_001901033.1 PFAM: MOFRL domain protein; KEGG: reh:H16_A3601 hydroxypyruvate reductase YP_001901034.1 KEGG: reh:H16_A3602 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_001901035.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001901036.1 KEGG: rso:RSc3285 putative Leu/Ile/Val-binding signal peptide protein YP_001901037.1 PFAM: UvrD/REP helicase; KEGG: rso:RSc3289 probable ATP-dependent DNA helicase REP protein YP_001901038.1 KEGG: rso:RSc3291 hypothetical protein YP_001901039.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_001901040.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_001901041.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_001901042.1 KEGG: rso:RSc3296 probable L-serine dehydratase (L-serine deaminase ) protein; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_001901043.1 TIGRFAM: oligopeptide transporters, OPT superfamily; oligopeptide transporter, OPT family; PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: rso:RSc3297 hypothetical protein YP_001901044.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ppu:PP_4846 phosphinothricin N-acetyltransferase, putative YP_001901045.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity YP_001901046.1 PFAM: sodium/hydrogen exchanger; KEGG: rso:RSc3299 hypothetical protein YP_001901047.1 PFAM: Extracellular ligand-binding receptor; KEGG: rso:RSc3300 putative amino-acid transport signal peptide protein YP_001901048.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein YP_001901049.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_001901050.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_001901051.1 PFAM: Cupin domain protein; Cupin 2 conserved barrel domain protein; KEGG: rso:RSc3304 probable signal peptide protein YP_001901052.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pol:Bpro_2417 glutathione-dependent formaldehyde-activating, GFA YP_001901053.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: rso:RSc3307 putative methyl-accepting chemotaxis transmembrane protein YP_001901054.1 PFAM: fatty acid hydroxylase; KEGG: reu:Reut_A0387 hypothetical protein YP_001901055.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc3308 probable transcription regulator protein YP_001901056.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc3309 probable glutathione S-transferase protein YP_001901057.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc3310 probable phosphate-binding periplasmic precursor (PBP) ABC transporter protein YP_001901058.1 KEGG: rso:RSc3311 hypothetical protein YP_001901059.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rso:RSc3312 putative lipase protein YP_001901060.1 PFAM: CoA-binding domain protein; KEGG: rso:RSc3313 hypothetical protein YP_001901061.1 KEGG: rso:RSc3314 hypothetical protein YP_001901062.1 KEGG: rso:RSc3315 putative proline-rich transmembrane protein YP_001901063.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_001901064.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001901065.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_001901066.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001901067.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_001901068.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_001901069.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_001901070.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_001901071.1 KEGG: rso:RSc3324 hypothetical protein YP_001901072.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: rso:RSc3325 putative chromosome partitioning protein ParB YP_001901073.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rso:RSc3326 putative chromosome partitioning protein ParA YP_001901074.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_001901075.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001901076.1 PFAM: Extracellular ligand-binding receptor; KEGG: rso:RSc3329 probable amino-acid-binding periplasmic (PBP) ABC transporter protein YP_001901077.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc3331 short chain dehydrogenase YP_001901078.1 KEGG: rso:RSc3333 hypothetical protein YP_001901079.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc3334 probable transcription regulator protein YP_001901080.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: rso:RSc3335 hypothetical protein YP_001901081.1 TIGRFAM: phosphonate degradation operons associated HDIG domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: bte:BTH_II2048 hypothetical protein YP_001901082.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: bps:BPSS1690 hypothetical protein YP_001901083.1 PFAM: protein of unknown function DUF81; KEGG: rso:RSc3337 hypothetical protein YP_001901084.1 KEGG: rso:RSc3338 hypothetical protein YP_001901085.1 KEGG: rso:RSc3339 hypothetical protein YP_001901086.1 PFAM: inner-membrane translocator; KEGG: rso:RSc3340 probable transmembrane ABC transporter protein YP_001901087.1 PFAM: inner-membrane translocator; KEGG: rso:RSc3341 probable transmembrane ABC transporter protein YP_001901088.1 KEGG: rso:RSc3342 putative substrate-binding periplasmic (PBP) ABC transporter protein YP_001901089.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc3343 probable ATP-binding ABC transporter protein YP_001901090.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc3344 probable ATP-binding ABC transporter protein YP_001901091.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: rso:RSc3345 putative choline dehydrogenase lipoprotein oxidoreductase YP_001901092.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc3346 putative lysophospholipase protein YP_001901093.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: rso:RSc3347 probable transcription regulator protein YP_001901094.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rso:RSc3348 probable cation-transporting ATPase transmembrane protein YP_001901095.1 PFAM: Heavy metal transport/detoxification protein; KEGG: rso:RSc3349 hypothetical protein YP_001901096.1 PFAM: OmpW family protein; KEGG: rso:RSc3350 putative outer membrane W signal peptide protein YP_001901097.1 catalyzes the formation of L-proline from L-ornithine YP_001901098.1 PFAM: YhhN family protein; KEGG: rso:RSc3353 hypothetical protein YP_001901099.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rso:RSc3354 probable transcription regulator protein YP_001901100.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_001901101.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_001901102.1 KEGG: rso:RSc3357 hypothetical protein YP_001901103.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: reu:Reut_A3389 response regulator receiver:transcriptional regulatory protein, C-terminal YP_001901104.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: reh:H16_A3681 signal transduction histidine kinase YP_001901105.1 PFAM: nuclear protein SET; KEGG: rso:RSc3358 hypothetical protein YP_001901106.1 PFAM: histone family protein DNA-binding protein; KEGG: rso:RSc3359 probable histone-like DNA-binding protein HU-beta (NS1) YP_001901107.1 KEGG: rso:RSc3360 hypothetical protein YP_001901108.1 PFAM: class II aldolase/adducin family protein; KEGG: bxe:Bxe_B1223 hypothetical protein YP_001901109.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_001901110.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: rso:RSc3362 hypothetical protein YP_001901111.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: rso:RSc3363 probable 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor transmembrane protein YP_001901112.1 blocks the formation of polar Z-ring septums YP_001901113.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rso:RSc3365 probable septum site-determining protein MinD YP_001901114.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_001901115.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; Citrate synthase; KEGG: dac:Daci_4908 citrate synthase YP_001901116.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rso:RSc3367 hypothetical protein YP_001901117.1 PFAM: protein of unknown function DUF519; KEGG: rso:RSc3368 hypothetical protein YP_001901118.1 PFAM: protein of unknown function DUF344; KEGG: bxe:Bxe_B0632 hypothetical protein YP_001901119.1 PFAM: acylphosphatase; KEGG: rso:RSc3370 hypothetical protein YP_001901120.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc3371 putative transmembrane ABC transporter protein YP_001901121.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc3372 probable composite ATP-binding transmembrane ABC transporter protein YP_001901122.1 Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export YP_001901123.1 PFAM: dienelactone hydrolase; KEGG: reu:Reut_B5814 hypothetical protein YP_001901124.1 KEGG: rme:Rmet_3866 putative chromate resistance signal peptide protein YP_001901125.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: reu:Reut_A1521 chromate transporter YP_001901126.1 KEGG: rso:RSc3375 hypothetical protein YP_001901127.1 PFAM: protein of unknown function DUF1311; KEGG: ccr:CC_2991 hypothetical protein YP_001901128.1 PFAM: regulatory protein ArsR; KEGG: rso:RSp1129 putative arsenical resistance operon repressor transcription regulator protein YP_001901129.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reh:H16_A2179 lactoylglutathione lyase YP_001901130.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rso:RSp1128 putative arsenate reductase (arsenical PUMP modifier) protein YP_001901131.1 PFAM: major intrinsic protein; KEGG: rso:RS05492 probable transmembrane ABC transporter protein YP_001901132.1 PFAM: alpha/beta hydrolase fold; KEGG: rme:Rmet_1760 alpha/beta hydrolase fold YP_001901133.1 KEGG: mlo:mll4534 hypothetical protein YP_001901134.1 KEGG: rso:RSc3434 hypothetical protein YP_001901135.1 KEGG: ava:Ava_4685 hypothetical protein YP_001901137.1 PFAM: RelA/SpoT domain protein; KEGG: aha:AHA_3012 region found in RelA / SpoT proteins YP_001901138.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc3379 putative transmembrane protein YP_001901139.1 KEGG: rso:RSc3380 hypothetical signal peptide protein YP_001901140.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001901141.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001901142.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex YP_001901143.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; KEGG: rso:RSc3385 probable two-component sensor kinase KdpD transcription regulator protein YP_001901144.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: rso:RSc3386 putative outermembrane signal peptide protein YP_001901145.1 PFAM: EAL domain protein; response regulator receiver; KEGG: rso:RSc3387 probable two-component response regulator transcription regulator protein YP_001901146.1 PFAM: regulatory protein LuxR; response regulator receiver; sigma-70 region 4 domain protein; KEGG: rso:RSc3388 probable two-component response regulator transcription regulator protein YP_001901147.1 PFAM: major intrinsic protein; KEGG: reh:H16_A3690 glycerol uptake facilitator or related permease YP_001901148.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr0898 probable ATP-binding protein YP_001901149.1 SMART: helix-turn-helix domain protein; KEGG: bch:Bcen2424_3425 transcriptional regulator, XRE family YP_001901150.1 PFAM: isochorismatase hydrolase; KEGG: spe:Spro_2783 isochorismatase hydrolase YP_001901151.1 PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_1483 hypothetical protein YP_001901152.1 PFAM: porin Gram-negative type; KEGG: rso:RSc3390 probable porin signal peptide protein YP_001901153.1 KEGG: rso:RSc3391 hypothetical signal peptide protein YP_001901154.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSc3392 probable response regulator transcription regulator protein YP_001901155.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: bxe:Bxe_B0497 histidine kinase YP_001901156.1 KEGG: shw:Sputw3181_3921 hypothetical protein YP_001901157.1 KEGG: bpt:Bpet1645 putative secreted protein YP_001901158.1 KEGG: bam:Bamb_5637 hypothetical protein YP_001901159.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rso:RSc3397 hypothetical protein YP_001901160.1 PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rso:RSc3398 probable flavohemoprotein (hemoglobin-like) transmembrane YP_001901161.1 PFAM: NnrS family protein; KEGG: rso:RSc3399 probable transmembrane protein YP_001901162.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: reu:Reut_A1805 regulatory protein GntR, HTH:aminotransferase, class I and II YP_001901163.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rme:Rmet_4317 alkylhydroperoxidase AhpD core YP_001901164.1 KEGG: smd:Smed_1734 hypothetical protein YP_001901165.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc3400 probable tranporter transmembrane protein YP_001901166.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_B4604 regulatory protein, LysR:LysR, substrate-binding YP_001901167.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_001901168.1 TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: bmu:Bmul_3330 allantoin catabolism protein YP_001901169.1 KEGG: pol:Bpro_1225 ISPsy11, transposase OrfA YP_001901170.1 PFAM: Integrase catalytic region; KEGG: pol:Bpro_3089 integrase, catalytic region YP_001901171.1 KEGG: bur:Bcep18194_B2805 trans-aconitate 2-methyltransferase YP_001901172.1 KEGG: bur:Bcep18194_B2806 transcriptional regulator, LysR family YP_001901173.1 KEGG: rso:RSc0320 hypothetical protein YP_001901174.1 KEGG: rso:RS03926 hypothetical protein YP_001901175.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bte:BTH_I0180 hypothetical protein YP_001901176.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rso:RSc3403 probable two-component sensor kinase transcription regulator protein YP_001901177.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSc3404 probable response regulator transcription regulator protein YP_001901178.1 KEGG: reu:Reut_B4031 hypothetical protein YP_001901179.1 PFAM: UspA domain protein; KEGG: rme:Rmet_0458 UspA YP_001901180.1 PFAM: thioesterase superfamily protein; KEGG: xau:Xaut_1411 thioesterase superfamily protein YP_001901181.1 KEGG: rso:RSc0126 hypothetical/unknown protein YP_001901183.1 KEGG: rso:RS04814 probable transmembrane protein YP_001901184.1 KEGG: bpd:BURPS668_0383 hypothetical protein YP_001901185.1 KEGG: rso:RSc0125 hypothetical protein YP_001901186.1 KEGG: rso:RSc3434 hypothetical protein YP_001901187.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mlo:mll2505 probable transcriptional regulator YP_001901188.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rso:RSc0123 putative alcohol dehydrogenase oxidoreductase protein YP_001901189.1 PFAM: extracellular solute-binding protein family 3; KEGG: rso:RSc0122 probable substrate-binding periplasmic (PBP) ABC transporter protein YP_001901190.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc0121 putative oxidoreductase flavoprotein FAD YP_001901191.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: cell surface receptor IPT/TIG domain protein; Autotransporter beta- domain protein; Ig family protein; KEGG: rso:RSc0115 putative hemagglutinin-related protein YP_001901192.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: rso:RSc0114 hypothetical protein YP_001901193.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_001901194.1 PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc0112 putative D-amino acid oxidase flavoprotein oxidoreductase YP_001901195.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate YP_001901196.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_001901197.1 PFAM: thiamine monophosphate synthase; KEGG: rso:RSc0108 probable thiamine-phosphate pyrophosphorylase protein YP_001901198.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rso:RSc0107 hypothetical protein YP_001901199.1 KEGG: reh:H16_A0657 hypothetical protein YP_001901200.1 KEGG: reh:H16_A0658 hypothetical protein YP_001901201.1 KEGG: rso:RSc0101 putative lipoprotein transmembrane YP_001901202.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: rso:RSc0100 probable bifunctional protein: hydroxy-phosphomethylpyrimidine kinase and hydroxy-methylpyrimidine kinase YP_001901203.1 KEGG: rso:RSc0099 putative signal peptide protein YP_001901204.1 PFAM: Alkaline phosphatase; KEGG: rso:RSc0098 putative alkaline phosphatase signal peptide protein YP_001901205.1 PFAM: Alkaline phosphatase; KEGG: rso:RSc0097 putative alkaline phosphatase lipoprotein transmembrane YP_001901206.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_001901207.1 PFAM: membrane protein of unknown function; KEGG: rso:RSc0092 probable transmembrane protein YP_001901208.1 KEGG: rso:RSc0091 probable 5,10-methylenetetrahydrofolate reductase oxidoreductase protein; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_001901209.1 PFAM: TfoX domain protein; KEGG: rso:RSc0090 hypothetical protein YP_001901210.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bxe:Bxe_B2212 hypothetical protein YP_001901211.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: rso:RSc0089 hypothetical protein YP_001901212.1 PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc0088 probable soluble lytic murein transglycosylase precursor transmembrane protein YP_001901213.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rso:RSc0087 putative NADH-ubiquinone oxidoreductase oxidoreductase protein YP_001901214.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc0086 hypothetical protein YP_001901215.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases YP_001901216.1 PFAM: extracellular solute-binding protein family 3; KEGG: rso:RSc0084 probable amino-acid-binding periplasmic (PBP) ABC transporter protein YP_001901217.1 PFAM: protein of unknown function DUF849; KEGG: rso:RSc0083 hypothetical protein YP_001901218.1 PFAM: aminotransferase class-III; KEGG: rso:RSc0082 hypothetical protein YP_001901219.1 PFAM: sugar isomerase (SIS); KEGG: rso:RSc0081 hypothetical protein YP_001901220.1 KEGG: rso:RSc0080 probable transmembrane protein YP_001901221.1 PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: rso:RSc0078 probable two component response regulator transcription regulator protein YP_001901222.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: rso:RSc0077 probable two component sensor histidine kinase transcription regulator protein YP_001901223.1 KEGG: rso:RSc0076 probable proline rich signal peptide protein YP_001901224.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: rso:RSc0075 putative RNA methyltransferase (SUN protein) YP_001901225.1 PFAM: peptidase M48 Ste24p; KEGG: rso:RSc0074 heat shock protein HtpX YP_001901226.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc0073 probable transporter transmembrane protein YP_001901227.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_001901228.1 KEGG: rso:RSc0071 probable transmembrane protein YP_001901229.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001901230.1 PFAM: Peptidoglycan-binding LysM; KEGG: rso:RSc0069 probable signal peptide protein YP_001901231.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rso:RSc0068 probable smf protein YP_001901232.1 PFAM: Thioredoxin domain; KEGG: rso:RSc0067 putative thioredoxin-like protein YP_001901233.1 decatenates replicating daughter chromosomes YP_001901234.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0065 probable transcription regulator protein YP_001901235.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rso:RSc0064 putative long-chain-fatty-acid--CoA ligase protein YP_001901236.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: rso:RSc0063 probable rod shape-determining (RodA protein) transmembrane YP_001901237.1 KEGG: rso:RSc0062 probable substrate-binding transmembrane protein; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_001901238.1 TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: rso:RSc0061 probable rod shape-determining MreD transmembrane protein YP_001901239.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_001901240.1 functions in MreBCD complex in some organisms YP_001901241.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_001901242.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001901243.1 KEGG: rso:RSc0056 probable lipoprotein YP_001901244.1 PFAM: dienelactone hydrolase; KEGG: rso:RSc0055 hypothetical signal peptide protein YP_001901245.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001901246.1 PFAM: protein of unknown function DUF484; KEGG: rso:RSc0053 hypothetical protein YP_001901247.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_001901248.1 SMART: PUA domain containing protein; KEGG: rso:RSc0051 hypothetical protein YP_001901249.1 KEGG: bpl:BURPS1106A_A1741 hypothetical protein YP_001901250.1 PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: rso:RSc0050 hypothetical protein YP_001901251.1 KEGG: rso:RSc0049 putative hemaggltinin-related protein YP_001901252.1 PFAM: ferric-uptake regulator; KEGG: rso:RSc0048 putative transcription regulator protein YP_001901253.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rso:RSc0047 hypothetical protein YP_001901254.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: rme:Rmet_0126 transcriptional regulators, TraR/DksA family YP_001901255.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rso:RSc0045 hypothetical protein YP_001901256.1 PFAM: extracellular solute-binding protein family 5; KEGG: rso:RSc0044 probable substrate-binding periplasmic (PBP) ABC transporter protein YP_001901257.1 heat shock protein involved in degradation of misfolded proteins YP_001901258.1 heat shock protein involved in degradation of misfolded proteins YP_001901259.1 KEGG: reh:H16_B0584 conserved hypothetical periplasmic protein YP_001901260.1 PFAM: CsbD family protein; KEGG: reh:H16_B0585 hypothetical protein YP_001901261.1 PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: rso:RSc0040 probable response regulator transcription regulator protein YP_001901262.1 PFAM: ATP-binding region ATPase domain protein; KEGG: rso:RSc0039 probable transmembrane sensor histidine kinase transcription regulator protein YP_001901263.1 PFAM: protein of unknown function DUF461; KEGG: rso:RSc0038 putative transmembrane protein YP_001901264.1 KEGG: rso:RSc0037 hypothetical protein YP_001901265.1 KEGG: rso:RSc0035 hypothetical protein YP_001901266.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001901267.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_001901268.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rso:RSc0032 hypothetical protein YP_001901269.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_001901270.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rso:RSc0030 putative transcription regulator protein YP_001901271.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: rso:RSc0029 probable 4-aminobutyrate aminotransferase protein YP_001901272.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: rso:RSc0028 probable succinate-semialdehyde dehydrogenase oxidoreductase protein YP_001901273.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_001901274.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: rso:RSc0026 hypothetical protein YP_001901275.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: rso:RSc0024 putative signal peptide protein YP_001901276.1 PFAM: protein of unknown function DUF466; KEGG: rso:RSc0023 hypothetical protein YP_001901277.1 PFAM: carbon starvation protein CstA; KEGG: rso:RSc0022 probable carbon starvation A transmembrane protein YP_001901278.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; Cache type 2 domain protein; KEGG: rso:RSc0021 probable transmembrane sensor histidine kinase transcription regulator protein YP_001901279.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bpl:BURPS1106A_A3133 DNA-binding response regulator, LuxR family YP_001901280.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: rme:Rmet_1840 NAD-dependent epimerase/dehydratase YP_001901281.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reu:Reut_A1428 regulatory protein GntR, HTH:GntR, C-terminal YP_001901282.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: vei:Veis_3388 6-phosphogluconate dehydrogenase, NAD-binding YP_001901283.1 PFAM: type III effector Hrp-dependent outers; KEGG: bam:Bamb_4551 type III effector Hrp-dependent outers YP_001901284.1 PFAM: class II aldolase/adducin family protein; KEGG: rme:Rmet_1837 putative aldolase YP_001901285.1 PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B0475 major facilitator superfamily (MFS_1) transporter YP_001901286.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rso:RSc0020 hypothetical protein YP_001901287.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSc0018 probable response regulator transcription regulator protein YP_001901289.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_001901290.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rso:RSc0016 putative D-3-phosphoglycerate dehydrogenase oxidoreductase protein YP_001901291.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: rso:RSc0015 hypothetical protein YP_001901292.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rso:RSc0014 probable glutathione reductase oxidoreductase protein YP_001901293.1 PFAM: Patatin; KEGG: rso:RSc0013 hypothetical protein YP_001901294.1 PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: rso:RSc0012 putative AcrAB operon repressor transcription regulator protein YP_001901295.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSc0011 probable acriflavin resistance lipoprotein A precursor YP_001901296.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rso:RSc0010 putative acriflavin resistance transmembrane protein YP_001901297.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RSc0009 probable drug efflux lipoprotein YP_001901298.1 KEGG: pmy:Pmen_2775 DNA topoisomerase YP_001901299.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001901300.1 KEGG: bur:Bcep18194_A5683 hypothetical protein YP_001901301.1 KEGG: bch:Bcen2424_4468 hypothetical protein YP_001901302.1 PFAM: NUDIX hydrolase; KEGG: stp:Strop_1988 NUDIX hydrolase YP_001901303.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001901304.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rme:Rmet_5189 glyoxalase/bleomycin resistance protein/dioxygenase YP_001901305.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_001901306.1 PFAM: protein of unknown function DUF37; KEGG: rso:RSc0003 hypothetical protein YP_001901307.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: rso:RSc0002 probable ribonuclease P protein component YP_001901308.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_001901310.1 KEGG: reh:H16_B1861 PemK-like protein DNA binding protein YP_001901313.1 PFAM: integrase family protein; KEGG: bch:Bcen2424_6892 phage integrase family protein YP_001901317.1 KEGG: xac:XAC2421 hypothetical protein YP_001901319.1 KEGG: bvi:Bcep1808_6716 hypothetical protein YP_001901321.1 KEGG: sgl:SG0619 hypothetical protein YP_001901322.1 KEGG: swi:Swit_5119 hypothetical protein YP_001901323.1 PFAM: initiator RepB protein; KEGG: ppd:Ppro_3857 initiator RepB protein YP_001901325.1 KEGG: bch:Bcen2424_0451 hypothetical protein YP_001901326.1 KEGG: ypm:YP_pCRY22 putative mobilization MobB protein YP_001901327.1 KEGG: bte:BTH_I2729 hypothetical protein YP_001901329.1 KEGG: ajs:Ajs_4207 hypothetical protein YP_001901330.1 KEGG: dar:Daro_2219 ParB-like nuclease YP_001901331.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: bch:Bcen2424_5220 AAA ATPase, central domain protein YP_001901332.1 PFAM: metallophosphoesterase; KEGG: mms:mma_3037 metallophosphoesterase YP_001901333.1 KEGG: bmu:Bmul_4729 hypothetical protein YP_001901334.1 PFAM: Gp37Gp68 family protein; KEGG: pst:PSPTO_0049 hypothetical protein YP_001901335.1 PFAM: peptidase S24 and S26 domain protein; KEGG: mfa:Mfla_1781 putative prophage repressor YP_001901336.1 KEGG: rfr:Rfer_1071 hypothetical protein YP_001901337.1 KEGG: xac:XAC2421 hypothetical protein YP_001901338.1 KEGG: pca:Pcar_0116 hypothetical protein YP_001901339.1 KEGG: tcx:Tcr_1645 hypothetical protein YP_001901340.1 PFAM: TniB family protein; KEGG: asa:ASA_1044 TniB YP_001901341.1 KEGG: asa:ASA_1043 TniA transposase YP_001901342.1 PFAM: TnsA endonuclease; KEGG: rfr:Rfer_3933 hypothetical protein YP_001901343.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: reu:Reut_B5170 cation efflux protein YP_001901344.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rme:Rmet_5322 periplasmic sensor signal transduction histidine kinase YP_001901345.1 PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: rme:Rmet_5323 two component transcriptional regulator, LuxR family YP_001901346.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rme:Rmet_5319 heavy metal efflux pump CzcA YP_001901347.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rme:Rmet_5320 secretion protein HlyD YP_001901348.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rme:Rmet_5321 RND efflux system, outer membrane lipoprotein, NodT YP_001901349.1 KEGG: pnu:Pnuc_1326 hypothetical protein YP_001901351.1 PFAM: natural resistance-associated macrophage protein; KEGG: rso:RSp0027 putative manganese transport transmembrane protein YP_001901352.1 KEGG: rso:RS02001 hypothetical protein YP_001901353.1 PFAM: Carbohydrate-selective porin OprB; KEGG: rso:RSc1195 hypothetical protein YP_001901354.1 PFAM: ParB domain protein nuclease; KEGG: aav:Aave_0680 ParB domain protein nuclease YP_001901355.1 PFAM: protein of unknown function DUF932; KEGG: ajs:Ajs_4210 protein of unknown function DUF932 YP_001901356.1 KEGG: mdo:100032658 hypothetical protein LOC100032658 YP_001901358.1 KEGG: stt:t4236 hypothetical protein YP_001901359.1 KEGG: reh:H16_B0943 hypothetical protein YP_001901361.1 KEGG: rso:RSc3357 hypothetical protein YP_001901362.1 KEGG: ypp:YPDSF_4129 endonuclease YP_001901365.1 PFAM: TraB family protein; KEGG: nha:Nham_4542 TraB YP_001901366.1 KEGG: bmu:Bmul_1938 lytic transglycosylase catalytic YP_001901367.1 PFAM: conjugation TrbI family protein; KEGG: rme:Rmet_6299 conjugation TrbI-like protein YP_001901368.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pol:Bpro_5236 conjugal transfer protein TrbG/VirB9/CagX YP_001901369.1 KEGG: rfr:Rfer_4254 type IV secretory pathway component VirB8-like YP_001901370.1 PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: pol:Bpro_5231 TrbL/VirB6 plasmid conjugal transfer protein YP_001901372.1 KEGG: tbd:Tbd_1819 hypothetical protein YP_001901373.1 KEGG: rme:Rmet_6305 type IV secretory pathway VirB4 components-like protein YP_001901374.1 PFAM: type IV secretory pathway VirB3 family protein; KEGG: rfr:Rfer_4261 hypothetical protein YP_001901376.1 PFAM: type II secretion system protein E; KEGG: rme:Rmet_6302 type II secretion system protein E YP_001901377.1 PFAM: Lytic transglycosylase catalytic; KEGG: bvi:Bcep1808_1339 lytic transglycosylase, catalytic YP_001901379.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: rso:RSc0422 single-strand DNA-binding protein YP_001901382.1 PFAM: SCP-like extracellular; KEGG: bmu:Bmul_5562 SCP-like extracellular YP_001901383.1 KEGG: bvi:Bcep1808_7070 hypothetical protein YP_001901384.1 KEGG: pfl:PFL_4682 type IV prepilin PilV, putative YP_001901385.1 KEGG: olu:OSTLU_29138 predicted protein YP_001901386.1 KEGG: pol:Bpro_5245 type IV pilus biogenesis protein, putative YP_001901387.1 PFAM: type II secretion system protein; KEGG: bte:BTH_II0773 type IV pilus biogenesis protein YP_001901388.1 PFAM: type II secretion system protein E; KEGG: gox:GOX2628 nucleotide binding protein PilQ YP_001901389.1 KEGG: bam:Bamb_5879 PilO; putative type IV pilus biosynthesis protein YP_001901390.1 KEGG: ago:AGOS_ADL190C ADL190Cp YP_001901391.1 KEGG: gox:GOX2625 PilN YP_001901392.1 KEGG: pol:Bpro_5453 hypothetical protein YP_001901393.1 PFAM: Lytic transglycosylase catalytic; KEGG: bmu:Bmul_5550 lytic transglycosylase catalytic YP_001901394.1 KEGG: rme:Rmet_6297 hypothetical protein YP_001901396.1 KEGG: psp:PSPPH_1393 repressor protein C2, putative YP_001901397.1 KEGG: reu:Reut_A2380 peptidase S24, S26A and S26B