-- dump date   	20140620_025303
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_001041782.1	KEGG: mag:amb3790 large exoprotein involved in heme utilization or adhesion
YP_001041783.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: neu:NE2092 glycosyl transferase group 1:TPR repeat
YP_001041784.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_CH01377 probable toxin secretion ABC transporter, ATP-binding protein
YP_001041785.1	PFAM: secretion protein HlyD family protein; KEGG: ret:RHE_CH01378 probable protein secretion protein, HlyD family
YP_001041786.1	PFAM: Methyltransferase type 11; KEGG: dar:Daro_0786 TPR repeat:tetratricopeptide TPR_4
YP_001041787.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_001041788.1	KEGG: rsp:RSP_3538 hypothetical protein
YP_001041789.1	PFAM: sulfotransferase; KEGG: sye:Syncc9902_0128 hypothetical protein
YP_001041790.1	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pde:Pden_2119 glucose-1-phosphate thymidylyltransferase
YP_001041791.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pde:Pden_2120 dTDP-4-dehydrorhamnose reductase
YP_001041792.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rde:RD1_B0019 dTDP-glucose 4,6-dehydratase
YP_001041793.1	KEGG: sit:TM1040_3863 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related
YP_001041794.1	PFAM: glycosyl transferase, family 2; KEGG: net:Neut_0166 glycosyl transferase, family 2
YP_001041795.1	KEGG: jan:Jann_4266 RepA
YP_001041796.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sit:TM1040_3773 cobyrinic acid a,c-diamide synthase
YP_001041797.1	PFAM: ParB domain protein nuclease; KEGG: rde:RD1_B0047 chromosome partitioning protein, putative
YP_001041798.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_2127 ABC transporter related
YP_001041799.1	KEGG: pde:Pden_5038 capsule polysaccharide export protein-like
YP_001041800.1	PFAM: ABC-2 type transporter; KEGG: pde:Pden_5039 ABC-2 type transporter
YP_001041801.1	KEGG: ccr:CC0633 polysaccharide biosynthesis protein
YP_001041803.1	KEGG: rsp:RSP_3985 hypothetical protein
YP_001041804.1	KEGG: mes:Meso_2767 hypothetical protein
YP_001041805.1	PFAM: Hemolysin-type calcium-binding region; KEGG: sil:SPO2401 type I secretion target repeat protein
YP_001041807.1	KEGG: sye:Syncc9902_2034 TPR repeat
YP_001041808.1	KEGG: pde:Pden_5028 hypothetical protein
YP_001041809.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: jan:Jann_0077 NAD-dependent epimerase/dehydratase
YP_001041811.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit
YP_001041812.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex
YP_001041813.1	KEGG: bma:BMAA0124.1 ATP synthase gene 1, putative
YP_001041814.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0
YP_001041815.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0
YP_001041816.1	PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: bxe:Bxe_C0044 H+-transporting two-sector ATPase, B/B' subunit
YP_001041817.1	KEGG: bxe:Bxe_A1885 ATP synthase F1, alpha subunit; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein
YP_001041818.1	PFAM: H+-transporting two-sector ATPase, gamma subunit; KEGG: bte:BTH_II0427 ATP synthase F1, gamma subunit
YP_001041819.1	KEGG: pde:Pden_2404 hypothetical protein
YP_001041820.1	KEGG: sil:SPOA0122 ISSpo9, transposase
YP_001041822.1	TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: hch:HCH_02073 rhs family protein
YP_001041824.1	KEGG: bur:Bcep18194_B2403 hypothetical protein
YP_001041826.1	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; Cupin 2, conserved barrel domain protein; KEGG: bch:Bcen2424_3705 transcriptional regulator, AraC family
YP_001041827.1	PFAM: regulatory protein, MerR; KEGG: sil:SPOA0389 transcriptional regulator, MerR family
YP_001041828.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: hne:HNE_0549 cation diffusion facilitator family transporter
YP_001041829.1	PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pde:Pden_1629 RNA polymerase, sigma-24 subunit, ECF subfamily
YP_001041830.1	PFAM: FecR protein; KEGG: pen:PSEEN4566 FecR-like transmembrane sensor
YP_001041831.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: neu:NE1097 TonB-dependent receptor protein
YP_001041832.1	PFAM: periplasmic binding protein; KEGG: aha:AHA_4278 ferrichrome-binding periplasmic protein
YP_001041833.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_001041834.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ecj:JW0147 iron-hydroxamate transporter subunit
YP_001041835.1	TIGRFAM: uncharacterized domain 1; KEGG: pde:Pden_1441 hypothetical protein
YP_001041836.1	PFAM: protein of unknown function DUF81; KEGG: pde:Pden_1465 hypothetical protein
YP_001041838.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pde:Pden_1467 lysine exporter protein (LysE/YggA)
YP_001041839.1	PFAM: protein of unknown function DUF1234; KEGG: pde:Pden_1468 protein of unknown function DUF1234
YP_001041840.1	KEGG: pde:Pden_1469 putative transcriptional regulator, AsnC family
YP_001041841.1	PFAM: alpha/beta hydrolase fold; KEGG: rme:Rmet_1566 alpha/beta hydrolase fold
YP_001041842.1	PFAM: regulatory protein, MerR; KEGG: rpa:RPA4825 transcriptional regulator, MerR family
YP_001041843.1	KEGG: rsp:RSP_4150 hypothetical protein
YP_001041844.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pfo:Pfl_1318 transcriptional regulator, LysR family
YP_001041845.1	PFAM: protein of unknown function DUF606; KEGG: bur:Bcep18194_B1974 protein of unknown function DUF606
YP_001041846.1	PFAM: UspA domain protein; KEGG: mes:Meso_0781 UspA
YP_001041847.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: rsp:RSP_4197 antisigma-factor antagonist, STAS
YP_001041848.1	PFAM: MscS Mechanosensitive ion channel; KEGG: eba:ebA6709 putative mechanosensitive channel protein
YP_001041849.1	Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation
YP_001041850.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sma:SAV6021 GntR-family transcriptional regulator
YP_001041851.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rfr:Rfer_0985 extracellular solute-binding protein, family 5
YP_001041852.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0984 binding-protein-dependent transport systems inner membrane component
YP_001041853.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0983 binding-protein-dependent transport systems inner membrane component
YP_001041854.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_PE00431 probable oxidoreductase protein, short-chain-dehydrogenase (SDR) superfamily
YP_001041855.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: sil:SPO2413 oxidoreductase, short chain dehydrogenase/reductase family
YP_001041856.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: mes:Meso_1946 mandelate racemase/muconate lactonizing enzyme-like
YP_001041857.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: sme:SMb20435 hypothetical protein
YP_001041858.1	PFAM: Uncharacterised conserved protein UCP012702; MlrC domain protein; KEGG: bch:Bcen2424_6086 MlrC domain protein
YP_001041859.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: bbr:BB4687 putative mandelate racemase
YP_001041860.1	KEGG: jan:Jann_4131 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_001041861.1	KEGG: rme:Rmet_5092 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_001041862.1	PFAM: protein of unknown function DUF1217; KEGG: sil:SPO3456 flagellar protein, putative
YP_001041863.1	post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella
YP_001041864.1	acts as an activator of flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum
YP_001041865.1	PFAM: flagellin domain protein; KEGG: pde:Pden_1620 flagellin domain protein
YP_001041867.1	PFAM: protein of unknown function DUF81; KEGG: ade:Adeh_2178 protein of unknown function DUF81
YP_001041868.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sit:TM1040_0365 GntR-like
YP_001041869.1	TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: mag:amb2949 molybdenum-pterin binding protein MopA
YP_001041870.1	KEGG: rpa:RPA1002 putative molybdenum transport system protein; TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase
YP_001041871.1	PFAM: TOBE domain protein; KEGG: pde:Pden_1172 TOBE domain protein
YP_001041872.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc03196 putative molybdate-binding periplasmic ABC transporter protein
YP_001041873.1	part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE
YP_001041874.1	KEGG: sil:SPO0697 molybdate ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase
YP_001041875.1	PFAM: Exopolysaccharide synthesis, ExoD; KEGG: hch:HCH_02767 probable exopolysaccharide synthesis protein
YP_001041876.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pde:Pden_4422 alkylhydroperoxidase like protein, AhpD family
YP_001041878.1	TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pde:Pden_2812 transcriptional regulator, BadM/Rrf2 family
YP_001041879.1	PFAM: Negative transcriptional regulator; KEGG: mlo:mlr6176 transcriptional regulator
YP_001041880.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rme:Rmet_3862 lysine exporter protein (LysE/YggA)
YP_001041881.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_001041882.1	TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pde:Pden_4344 sulfate ABC transporter, periplasmic sulfate-binding protein
YP_001041883.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_4343 sulfate ABC transporter, inner membrane subunit CysT
YP_001041884.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_4342 sulfate ABC transporter, inner membrane subunit CysW
YP_001041885.1	KEGG: pde:Pden_4341 sulfate ABC transporter, ATPase subunit; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_001041886.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: pde:Pden_5122 putative transcriptional regulator, AsnC family
YP_001041887.1	PFAM: protein of unknown function UPF0126; KEGG: rpb:RPB_1303 protein of unknown function UPF0126
YP_001041888.1	PFAM: Hemolysin-type calcium-binding region; Na-Ca exchanger/integrin-beta4; KEGG: ana:all0364 similar to prohormone convertase
YP_001041893.1	KEGG: rsp:RSP_1332 H+-transporting two-sector ATPase, alpha/beta subunit; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase
YP_001041894.1	KEGG: rsp:RSP_1333 hypothetical protein
YP_001041895.1	KEGG: rsp:RSP_1334 possible chemotactic signal-response protein CheL
YP_001041896.1	KEGG: rsp:RSP_1335 hypothetical protein
YP_001041897.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Rhodobacter sphaeroides has 2 copies of many flagellar genes; the Rhodobacter protein in this cluster is associated with a set of flagellar genes acquired by lateral gene transfer; these genes are not normally expressed
YP_001041898.1	TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: rsp:RSP_1337 probable ubiquinone biosynthesis protein
YP_001041899.1	TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rsp:RSP_1338 methyltransferase
YP_001041900.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_001041901.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rsp:RSP_1340 enoyl-CoA hydratase/isomerase
YP_001041902.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_001041903.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_001041904.1	binds the polymerase to DNA and acts as a sliding clamp
YP_001041905.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_001041906.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rsp:RSP_1345 hypothetical protein
YP_001041907.1	negatively supercoils closed circular double-stranded DNA
YP_001041908.1	KEGG: rsp:RSP_1348 hypothetical protein
YP_001041909.1	PFAM: AFG1-family ATPase; KEGG: rsp:RSP_1349 hypothetical protein
YP_001041910.1	KEGG: rsp:RSP_1350 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase
YP_001041911.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate
YP_001041912.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_001041913.1	PFAM: metallophosphoesterase; KEGG: rsp:RSP_1353 putative protein phosphatase
YP_001041914.1	catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA
YP_001041915.1	KEGG: rsp:RSP_1355 glycosyl transferase, family 51; TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; Penicillin-binding domain protein
YP_001041916.1	PFAM: alpha-2-macroglobulin domain protein; N/apple PAN domain protein; alpha-2-macroglobulin domain protein 2; SMART: Apple; KEGG: rsp:RSP_1356 hypothetical protein
YP_001041917.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_1357 cytoplasmic sensor hybrid histidine kinase
YP_001041918.1	PFAM: protein of unknown function DUF328; KEGG: rsp:RSP_1358 hypothetical protein
YP_001041919.1	KEGG: rsp:RSP_1359 DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_001041920.1	PFAM: protein of unknown function YGGT; KEGG: rsp:RSP_1360 hypothetical protein
YP_001041921.1	KEGG: rsp:RSP_1361 hypothetical protein
YP_001041922.1	PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_1362 major facilitator superfamily (MFS) transporter
YP_001041923.1	D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm
YP_001041924.1	KEGG: rsp:RSP_1364 hypothetical protein
YP_001041925.1	TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: rsp:RSP_1365 hypothetical protein
YP_001041926.1	PFAM: Class I peptide chain release factor; KEGG: rsp:RSP_1366 hypothetical protein
YP_001041927.1	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate
YP_001041928.1	PFAM: isochorismatase hydrolase; KEGG: rsp:RSP_1368 probable pyrazinamidase/nicotinamidase
YP_001041929.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_1369 short-chain dehydrogenase/reductase SDR
YP_001041930.1	PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: rsp:RSP_1371 putative 2-dehydro-3-deoxygalactonokinase
YP_001041931.1	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: rsp:RSP_1370 alpha amylase, catalytic subdomain
YP_001041932.1	PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_1372 major facilitator superfamily (MFS) transporter
YP_001041933.1	PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_1373 major facilitator superfamily (MFS) transporter
YP_001041934.1	PFAM: glycosyl transferase, group 1; KEGG: rsp:RSP_1374 putative lipopolysaccharide core biosynthesis mannosyltransferase protein
YP_001041935.1	KEGG: rsp:RSP_1375 hypothetical protein
YP_001041936.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_001041937.1	PFAM: carbonic anhydrase; KEGG: rsp:RSP_1377 carbonic anhydrase
YP_001041938.1	KEGG: rsp:RSP_1378 hypothetical protein
YP_001041939.1	PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: rsp:RSP_1379 cytosol aminopeptidase
YP_001041940.1	PFAM: NLP/P60 protein; KEGG: rsp:RSP_1380 hypothetical protein
YP_001041941.1	PFAM: protein of unknown function DUF1006; KEGG: rsp:RSP_1381 hypothetical protein
YP_001041942.1	TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: rsp:RSP_1382 radical SAM superfamily protein
YP_001041943.1	KEGG: rsp:RSP_1383 hypothetical protein
YP_001041944.1	PFAM: L-asparaginase II; KEGG: rsp:RSP_1384 hypothetical protein
YP_001041945.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: rsp:RSP_1385 hypothetical protein
YP_001041946.1	Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile
YP_001041947.1	PFAM: histone family protein DNA-binding protein; KEGG: rsp:RSP_1388 DNA-binding protein HU, form N
YP_001041948.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_1390 putative transporter, DMT superfamily
YP_001041949.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_001041950.1	part of the thiamine and TPP transport system tbpA-thiPQ
YP_001041951.1	permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine
YP_001041952.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_1393 ABC thiamine transporter, ATPase subunit
YP_001041953.1	PFAM: cytochrome c1; KEGG: rsp:RSP_1394 cytochrome c1 precursor
YP_001041954.1	PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; KEGG: rsp:RSP_1395 cytochrome b
YP_001041955.1	KEGG: rsp:RSP_1396 ubiquinol-cytochrome c reductase, iron-sulfur protein; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein
YP_001041956.1	KEGG: rsp:RSP_1397 glutathione S-transferase
YP_001041957.1	KEGG: rsp:RSP_6156 hypothetical protein
YP_001041958.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif
YP_001041959.1	PFAM: N-formylglutamate amidohydrolase; KEGG: rsp:RSP_1399 hypothetical protein
YP_001041960.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_001041961.1	PFAM: band 7 protein; KEGG: rsp:RSP_1401 band 7 protein
YP_001041962.1	KEGG: rsp:RSP_6157 conserved hypoothetical protein
YP_001041963.1	KEGG: rsp:RSP_1403 conserved hypoothetical protein
YP_001041964.1	type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_001041965.1	PFAM: ROK family protein; KEGG: rsp:RSP_1405 ROK family protein
YP_001041966.1	KEGG: rsp:RSP_1406 hypothetical protein
YP_001041967.1	PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_1408 chaperone ClpB
YP_001041968.1	PFAM: beta-Ig-H3/fasciclin; KEGG: rsp:RSP_1409 beta-Ig-H3/fasciclin
YP_001041969.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_001041970.1	in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme
YP_001041971.1	KEGG: rsp:RSP_3837 hypothetical protein
YP_001041973.1	KEGG: rsp:RSP_1433 hypothetical protein
YP_001041974.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsp:RSP_1434 putative Zn-dependent oxidoreductase
YP_001041975.1	PFAM: regulatory protein, TetR; KEGG: rsp:RSP_1435 regulatory protein TetR family
YP_001041976.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_1436 ABC transporter, duplicated ATPase domains
YP_001041978.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_1437 ABC Fe+3 hydroxamate (ferrichrome) transporter, ATPase subunit
YP_001041979.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_001041980.1	PFAM: periplasmic binding protein; KEGG: rsp:RSP_1439 ABC Fe+3 hydroxamate (ferrichrome) transporter, periplasmic siderophore binding protein
YP_001041981.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rsp:RSP_1440 TonB dependent, hydroxamate-type ferrisiderophore, outer membrane receptor
YP_001041982.1	PFAM: ROK family protein; transcriptional regulator TrmB; KEGG: rsp:RSP_1441 regulatory protein, GntR family
YP_001041983.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_1442 ABC sugar transporter, periplasmic sugar-binding protein
YP_001041984.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1443 ABC sugar transporter, inner membrane subunit
YP_001041985.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1444 ABC sugar transporter, inner membrane subunit
YP_001041986.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_1445 ABC sugar transporter, ATPase subunit
YP_001041987.1	PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: rsp:RSP_1446 putative sugar kinase
YP_001041988.1	PFAM: sugar isomerase (SIS); KEGG: rsp:RSP_1447 possible glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
YP_001041989.1	PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: rsp:RSP_1448 putative L-allo-threonine aldolase
YP_001041990.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: rsp:RSP_1449 putative transcriptional regulator of sugar metabolism
YP_001041991.1	PFAM: inositol monophosphatase; KEGG: rsp:RSP_1450 inositol monophosphatase family protein
YP_001041992.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rsp:RSP_1451 ABC peptide/nickel/opine transporter, periplasmic substrate-binding protein
YP_001041993.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1452 ABC peptide/nickel/opine transporter, inner membrane subunit
YP_001041994.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1453 ABC peptide/nickel/opine transporter, inner membrane subunit
YP_001041995.1	KEGG: rsp:RSP_1454 ABC peptide/nickel/opine transporter, fused ATPase subunits; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_001041996.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_001041997.1	PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: rsp:RSP_1456 hypothetical protein
YP_001041998.1	PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: rsp:RSP_1457 putative choline kinase
YP_001042000.1	KEGG: rsp:RSP_1458 putative DNA repair enzyme
YP_001042001.1	KEGG: rsp:RSP_6001 hypothetical protein
YP_001042002.1	KEGG: rsp:RSP_1459 hypothetical protein
YP_001042003.1	KEGG: rsp:RSP_1460 hypothetical protein
YP_001042004.1	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: rsp:RSP_1461 putative 3-deoxy-D-manno-octulosonic-acid transferase
YP_001042005.1	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_001042006.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rsp:RSP_1463 putative acyl-CoA transferase/carnitine dehydratase
YP_001042007.1	KEGG: rsp:RSP_1464 putative periplasmic thiol-disulphide interchange protein (DsbA family)
YP_001042008.1	PFAM: protein of unknown function DUF1159; KEGG: rsp:RSP_1465 hypothetical protein
YP_001042009.1	TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: rsp:RSP_1466 putative MutY, A/G-specific adenine glycosylase
YP_001042010.1	PFAM: fatty acid desaturase; KEGG: rsp:RSP_1467 possible alkane hydroxylase (fatty acid desaturase)
YP_001042011.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rsp:RSP_1468 site-specific DNA-methyltransferase
YP_001042012.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_001042013.1	KEGG: rsp:RSP_1471 hypothetical protein
YP_001042014.1	KEGG: rsp:RSP_6002 hypothetical protein
YP_001042015.1	KEGG: rsp:RSP_1472 hypothetical protein
YP_001042016.1	KEGG: rsp:RSP_1473 hypothetical protein
YP_001042017.1	TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rsp:RSP_1474 putative carboxynorspermidine decarboxylase protein
YP_001042018.1	PFAM: Saccharopine dehydrogenase; KEGG: rsp:RSP_1475 saccharopine dehydrogenase family
YP_001042019.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rsp:RSP_1476 heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
YP_001042020.1	KEGG: rsp:RSP_6210 hypothetical protein
YP_001042021.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_1478 ABC oligopeptide transporter, fused ATPase subunits
YP_001042022.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1479 ABC oligopeptide transporter, inner membrane subunit OppC
YP_001042023.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1480 ABC oligopeptide transporter, inner membrane subunit OppB
YP_001042024.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rsp:RSP_1481 ABC oligopeptide transporter, perplasmic substrate-binding protein OppA
YP_001042025.1	KEGG: rpc:RPC_4596 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_001042026.1	KEGG: rsp:RSP_1483 hypothetical protein
YP_001042027.1	PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rsp:RSP_1485 ATP-dependent RNA helicase
YP_001042028.1	PFAM: regulatory protein, TetR; KEGG: rsp:RSP_1486 regulatory protein, TetR family
YP_001042029.1	PFAM: protein of unknown function DUF1428; KEGG: rsp:RSP_1487 hypothetical protein
YP_001042030.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rsp:RSP_1488 possible glyoxalase
YP_001042031.1	TIGRFAM: thioredoxin; PFAM: Tetratricopeptide TPR_4; Thioredoxin domain; KEGG: rsp:RSP_1489 protein containing thioredoxin domain
YP_001042032.1	PFAM: peptidase S16, lon domain protein; KEGG: rsp:RSP_1490 putative ATP-dependent protease La, LON
YP_001042033.1	PFAM: protein of unknown function DUF343; KEGG: rsp:RSP_1491 hypothetical protein
YP_001042034.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: rsp:RSP_1492 UbiH/COQ6 monooxygenase family
YP_001042035.1	PFAM: Amidase; KEGG: rsp:RSP_1493 amidase
YP_001042036.1	PFAM: aminotransferase, class I and II; KEGG: rsp:RSP_1494 putative aspartate aminotransferase
YP_001042037.1	PFAM: cell divisionFtsK/SpoIIIE; KEGG: rsp:RSP_1495 putative cell division protein
YP_001042038.1	PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: rsp:RSP_1497 putative outer membrane lipoprotein carrier protein
YP_001042039.1	KEGG: rsp:RSP_1496 hypothetical protein
YP_001042040.1	TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: rsp:RSP_1498 hypothetical protein
YP_001042041.1	PFAM: gamma-glutamyltranspeptidase; KEGG: rsp:RSP_1499 probable gamma-glutamyltranspeptidase
YP_001042042.1	KEGG: rsp:RSP_1500 possible anti-sigma regulatory kinase
YP_001042043.1	TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rsp:RSP_1501 antisigma-factor antagonist (STAS) domain protein
YP_001042044.1	KEGG: rsp:RSP_1502 GAF domain protein
YP_001042045.1	KEGG: rsp:RSP_1504 hypothetical protein
YP_001042046.1	PFAM: pseudouridine synthase; KEGG: rsp:RSP_1506 pseudouridine synthase, Rlu
YP_001042047.1	PFAM: metallophosphoesterase; KEGG: rsp:RSP_1505 putative metallo-phosphoesterase
YP_001042048.1	PFAM: aldehyde dehydrogenase; KEGG: rsp:RSP_1507 aldehyde dehydrogenase
YP_001042049.1	PFAM: HemY domain protein; KEGG: rsp:RSP_1508 uncharacterized HemY-like membrane protein
YP_001042050.1	KEGG: rsp:RSP_6207 hypothetical protein
YP_001042051.1	PFAM: Uroporphyrinogen III synthase HEM4; KEGG: rsp:RSP_6208 putative uroporphyrinogen-III synthase
YP_001042052.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_001042053.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_001042054.1	unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity
YP_001042055.1	PFAM: protein of unknown function DUF55; KEGG: rsp:RSP_1512 hypothetical protein
YP_001042056.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_001042057.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_001042058.1	PFAM: glycosyl transferase, family 8; KEGG: rsp:RSP_1515 hypothetical protein of glycosyl transferase family
YP_001042059.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: rsp:RSP_1516 putative S-adenosyl L-homocystein hydrolase
YP_001042060.1	PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: rsp:RSP_1517 histone-like protein of HNS family
YP_001042061.1	PFAM: response regulator receiver; KEGG: rsp:RSP_1518 PrrA (RegA), response regulator involved in oxygen regulation of photosynthesis genes
YP_001042062.1	PFAM: electron transport protein SCO1/SenC; KEGG: rsp:RSP_1519 PrrC
YP_001042063.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_1520 sensor histidine kinase PrrB (RegB)
YP_001042064.1	KEGG: rsp:RSP_1521 hypothetical protein
YP_001042065.1	PFAM: protein of unknown function UPF0079; KEGG: rsp:RSP_1522 hypothetical protein
YP_001042066.1	PFAM: aminoglycoside phosphotransferase; KEGG: rsp:RSP_1523 hypothetical protein
YP_001042067.1	PFAM: Nucleotidyl transferase; KEGG: rsp:RSP_1524 nucleotidyltransferase family protein
YP_001042068.1	KEGG: rsp:RSP_1525 putative helicase/exonuclease
YP_001042069.1	TIGRFAM: UvrD-like DNA helicase, C terminal; PFAM: UvrD/REP helicase; KEGG: rsp:RSP_1527 helicase, UvrD/Rep family
YP_001042070.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rsp:RSP_1529 thioredoxin
YP_001042071.1	KEGG: rsp:RSP_1530 hypothetical protein
YP_001042072.1	heat shock protein involved in degradation of misfolded proteins
YP_001042073.1	heat shock protein involved in degradation of misfolded proteins
YP_001042074.1	PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: rsp:RSP_1533 putative alginate O-acetyltransferase
YP_001042075.1	KEGG: rsp:RSP_1534 putative acyl carrier protein
YP_001042076.1	TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; FkbH like protein; KEGG: rsp:RSP_1535 hypothetical protein
YP_001042077.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_6005 putative short chain dehydrogenase
YP_001042078.1	PFAM: MaoC domain protein dehydratase; KEGG: rsp:RSP_1536 conserved hypothetical protein that may be involved in lipid metabolism
YP_001042079.1	KEGG: rsp:RSP_1537 hypothetical protein
YP_001042080.1	TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: rsp:RSP_1538 probable glucose-1-phosphate cytidylyltransferase
YP_001042081.1	PFAM: glycosyl transferase, family 2; KEGG: rsp:RSP_1539 glycosyl transferase, family 2
YP_001042082.1	KEGG: rsp:RSP_1540 predicted secreted hydrolase
YP_001042083.1	PFAM: protein of unknown function DUF214; KEGG: rsp:RSP_1541 putative ABC transporter, fused inner membrane subunits
YP_001042084.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_1542 ABC transporter, ATPase subunit
YP_001042085.1	PFAM: Uncharacterised conserved protein UCP028101; KEGG: rsp:RSP_1543 hypothetical protein
YP_001042086.1	KEGG: rsp:RSP_1544 hypothetical signal peptide protein
YP_001042087.1	PFAM: protein of unknown function DUF1111; KEGG: rsp:RSP_1545 probable thiol oxidoreductase with 2 cytochrome c heme-binding sites
YP_001042088.1	TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: rsp:RSP_1546 bacterioferritin
YP_001042089.1	KEGG: rsp:RSP_1547 probable bacterioferritin-associated ferredoxin
YP_001042090.1	KEGG: rsp:RSP_1548 putative iron-regulated protein
YP_001042091.1	KEGG: rsp:RSP_6006 hypothetical protein
YP_001042092.1	PFAM: protein of unknown function DUF533; KEGG: rsp:RSP_1549 hypothetical protein
YP_001042093.1	PFAM: regulatory proteins, IclR; KEGG: rsp:RSP_1550 regulatory proteins, IclR family
YP_001042094.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rsp:RSP_1551 putative glyoxalase family protein
YP_001042095.1	catalyzes the formation of glyoxylate from (S)-ureidoglycolate
YP_001042096.1	PFAM: protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein; KEGG: rsp:RSP_1553 probable glyoxylate induced protein
YP_001042097.1	PFAM: polysaccharide deacetylase; KEGG: rsp:RSP_1554 possible polysaccharide deacetylase
YP_001042098.1	PFAM: Transthyretin; KEGG: rsp:RSP_1555 transthyretin-like protein
YP_001042099.1	PFAM: antenna complex, alpha/beta subunit; KEGG: rsp:RSP_1556 light-harvesting complex, beta subunit
YP_001042100.1	PFAM: antenna complex, alpha/beta subunit; KEGG: rsp:RSP_6158 light-harvesting complex alpha subunit
YP_001042101.1	Converts isocitrate to alpha ketoglutarate
YP_001042102.1	ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis
YP_001042103.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rsp:RSP_1561 AMP-forming acyl-CoA synthetase/ligase
YP_001042104.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rsp:RSP_1562 fumarylacetoacetate hydrolase family protein
YP_001042105.1	PFAM: luciferase family protein; KEGG: rsp:RSP_1563 putative oxidoreductase
YP_001042106.1	PFAM: protein of unknown function UPF0118; KEGG: rsp:RSP_1564 putative transmembrane transport protein
YP_001042107.1	PFAM: BLUF domain protein; KEGG: rsp:RSP_1565 AppA, antirepressor of PpsR, sensor of blue light
YP_001042108.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: rsp:RSP_1566 hypothetical protein
YP_001042109.1	KEGG: rsp:RSP_1567 probable sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_001042110.1	PFAM: glutamine synthetase, catalytic region; KEGG: rsp:RSP_1568 glutamine synthetase
YP_001042111.1	PFAM: aminotransferase class-III; KEGG: rsp:RSP_1569 glutamate-1-semialdehyde 2,1-aminomutase
YP_001042112.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_001042113.1	KEGG: rsp:RSP_1571 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_001042114.1	PFAM: protein of unknown function DUF465; KEGG: rsp:RSP_6218 hypothetical protein
YP_001042115.1	PFAM: heat shock protein Hsp20; KEGG: rsp:RSP_1572 heat shock protein, HSP20 family
YP_001042116.1	PFAM: protein of unknown function DUF1150; KEGG: rsp:RSP_1573 hypothetical protein
YP_001042117.1	PFAM: cytochrome B561; KEGG: rsp:RSP_1574 cytochrome b562
YP_001042118.1	in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from Escherichia coli involved in cysteine biosynthesis
YP_001042119.1	KEGG: rsp:RSP_1576 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_001042120.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: rsp:RSP_1577 proline dehydrogenase transcriptional activator
YP_001042121.1	PFAM: protein of unknown function DUF152; KEGG: rsp:RSP_1578 conserved hypothetical protein TIGR00726
YP_001042122.1	PFAM: protein of unknown function DUF185; KEGG: rsp:RSP_1579 hypothetical protein
YP_001042123.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_001042124.1	PFAM: protein of unknown function DUF526; KEGG: rsp:RSP_1581 hypothetical protein
YP_001042125.1	KEGG: rsp:RSP_1582 putative sulfate transporter/antisigma-factor antagonist
YP_001042126.1	PFAM: response regulator receiver; KEGG: rsp:RSP_1583 chemotaxis response regulator, CheY3
YP_001042127.1	PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rsp:RSP_1584 chemotaxis histidine protein kinase
YP_001042128.1	PFAM: CheW domain protein; KEGG: rsp:RSP_1585 chemotaxis protein, CheW2
YP_001042129.1	PFAM: CheW domain protein; KEGG: rsp:RSP_1586 chemotaxis protein, CheW3
YP_001042130.1	PFAM: MCP methyltransferase, CheR-type; KEGG: rsp:RSP_1587 chemotaxis methyltransferase, CheR2
YP_001042131.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: rsp:RSP_1588 chemotaxis methylesterase, CheB1
YP_001042132.1	KEGG: rsp:RSP_1589 transducer-like protein, TlpC
YP_001042133.1	KEGG: rsp:RSP_1591 predicted glutathione S-transferase
YP_001042134.1	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: rsp:RSP_1590 two component, sigma54 specific, transcriptional regulator, fis family
YP_001042135.1	KEGG: rsp:RSP_6007 hypothetical protein
YP_001042136.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rsp:RSP_1592 possible acyl-CoA sythetase
YP_001042137.1	NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate
YP_001042138.1	TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: rsp:RSP_1594 cytidine deaminase
YP_001042139.1	Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate
YP_001042140.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_001042141.1	catalyzes the formation of inosine from adenosine
YP_001042142.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_001042143.1	PFAM: Sporulation domain protein; KEGG: rsp:RSP_6008 hypothetical protein
YP_001042144.1	KEGG: rsp:RSP_6009 hypothetical protein
YP_001042145.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rsp:RSP_1599 AMP-binding protein
YP_001042146.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_1600 possible transporter, DME family, DMT superfamily
YP_001042147.1	PFAM: Methyltransferase type 11; KEGG: rsp:RSP_1601 hypothetical protein
YP_001042148.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_1602 TRAP-T family transporter, DctM (12TMs) subunit
YP_001042149.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rsp:RSP_1604 TRAP-T family transporter, DctQ (4TMs) subunit
YP_001042150.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_1605 TRAP-T family transporter, periplasmic binding protein, DctP
YP_001042151.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_1606 putative regulatory protein, GntR family
YP_001042152.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_1607 putative regulatory protein, GntR family
YP_001042153.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsp:RSP_1608 putative Zn-dependent dehydrogenase
YP_001042154.1	PFAM: Mannitol dehydrogenase, C-terminal domain; KEGG: rsp:RSP_1609 putative altronate dehydrogenase
YP_001042155.1	PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: rsp:RSP_1610 altronate hydrolase
YP_001042156.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_1611 sensor histidine kinase
YP_001042157.1	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: rsp:RSP_1612 sigma-54 dependent transcriptional regulator
YP_001042158.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: rsp:RSP_1613 TRAP-T family transporter, DctP subunit
YP_001042159.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_1614 TRAP-T family transporter with fused DctQ/DctM subunits
YP_001042160.1	PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_1614 TRAP-T family transporter with fused DctQ/DctM subunits
YP_001042161.1	KEGG: rsp:RSP_1615 hypothetical protein
YP_001042164.1	TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: nwi:Nwi_1628 phage portal protein, HK97
YP_001042165.1	KEGG: nwi:Nwi_1627 hypothetical protein
YP_001042166.1	TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35, phage prohead HK97; KEGG: nha:Nham_2490 peptidase U35, phage prohead HK97
YP_001042167.1	TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: nwi:Nwi_1625 phage major capsid protein, HK97
YP_001042168.1	KEGG: nha:Nham_2488 hypothetical protein
YP_001042169.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: rsp:RSP_2355 HNH nuclease / probable phage PHI-105 holin-like protein
YP_001042170.1	KEGG: mes:Meso_1894 hypothetical protein
YP_001042172.1	KEGG: nwi:Nwi_1622 uncharacterized phage protein (possible DNA packaging)
YP_001042173.1	TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: nwi:Nwi_1621 phage protein, HK97, GP10
YP_001042174.1	KEGG: nwi:Nwi_1620 hypothetical protein
YP_001042175.1	PFAM: phage head-tail adaptor, putative; KEGG: nwi:Nwi_1619 phage head-tail adaptor, putative
YP_001042176.1	TIGRFAM: phage terminase, small subunit, putative, P27 family; PFAM: phage terminase, small subunit, putative, P27; KEGG: nwi:Nwi_1473 phage terminase, small subunit, putative, P27
YP_001042177.1	PFAM: phage Terminase; KEGG: nwi:Nwi_1472 phage terminase
YP_001042178.1	KEGG: rsp:RSP_2351 hypothetical protein
YP_001042179.1	KEGG: nwi:Nwi_1614 hypothetical protein
YP_001042182.1	PFAM: phage integrase family protein; KEGG: gox:GOX2318 prophage integrase
YP_001042183.1	KEGG: rsp:RSP_1618 hypothetical protein
YP_001042184.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rsp:RSP_1663 putative transcriptional regulator, LacI family
YP_001042185.1	KEGG: rsp:RSP_1664 hypothetical protein
YP_001042186.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rsp:RSP_1665 putative RhtB family transporter
YP_001042187.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_001042188.1	PFAM: protein of unknown function DUF88; KEGG: rsp:RSP_1667 hypothetical protein
YP_001042189.1	TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: rsp:RSP_1668 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
YP_001042190.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_001042191.1	KEGG: rsp:RSP_1670 RelA/SpoT family protein; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region
YP_001042192.1	KEGG: rsp:RSP_1671 hypothetical protein
YP_001042193.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_001042194.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_001042195.1	KEGG: rsp:RSP_1674 type 1 signal peptidase; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B
YP_001042196.1	PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: rsp:RSP_1675 ribonuclease III
YP_001042197.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_001042198.1	PFAM: protein of unknown function DUF1491; KEGG: rsp:RSP_1677 hypothetical protein
YP_001042199.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_001042200.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rsp:RSP_1679 acyl-CoA dehydrogenase
YP_001042201.1	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
YP_001042202.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rsp:RSP_1681 two-component transcriptional regulator, winged helix family
YP_001042203.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_1682 two-component sensor histidine kinase
YP_001042204.1	KEGG: rsp:RSP_1683 putative kinase/phosphatase
YP_001042205.1	PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: rsp:RSP_1684 hypothetical protein
YP_001042206.1	PFAM: PTS system fructose subfamily IIA component; KEGG: rsp:RSP_1685 PTS system, IIA component
YP_001042207.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: rsp:RSP_1686 putative phosphocarrier HPr protein
YP_001042208.1	PFAM: acyltransferase 3; KEGG: rsp:RSP_1688 possible acyltransferase
YP_001042209.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_001042210.1	KEGG: rsp:RSP_1689 hypothetical protein
YP_001042211.1	PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: rsp:RSP_1690 electron transfer flavoprotein, alpha subunit
YP_001042212.1	PFAM: electron transfer flavoprotein beta-subunit; KEGG: rsp:RSP_1691 electron transfer flavoprotein beta-subunit
YP_001042213.1	TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: rsp:RSP_1692 hypothetical protein
YP_001042214.1	KEGG: rsp:RSP_6016 hypothetical protein
YP_001042215.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_1694 probable short-chain dehydrogenase/reductase
YP_001042216.1	PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: rsp:RSP_1695 hypothetical protein
YP_001042217.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001042218.1	KEGG: rsp:RSP_1697 hypothetical protein
YP_001042219.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001042220.1	KEGG: rsp:RSP_1706 putative acetyltransferase
YP_001042221.1	forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_001042222.1	KEGG: rsp:RSP_1704 probable transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein
YP_001042223.1	binds directly to 23S ribosomal RNA
YP_001042224.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_001042225.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_001042226.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_001042227.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_001042228.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_001042229.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_1711 possible transporter, RhaT family, DMT superfamily
YP_001042230.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_001042231.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_001042232.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001042233.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001042234.1	KEGG: rsp:RSP_1706 putative acetyltransferase
YP_001042235.1	forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_001042236.1	KEGG: rsp:RSP_1704 probable transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein
YP_001042237.1	binds directly to 23S ribosomal RNA
YP_001042238.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_001042239.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_001042240.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_001042241.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_001042242.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_001042243.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_1711 possible transporter, RhaT family, DMT superfamily
YP_001042244.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_001042245.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_001042246.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001042247.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001042248.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_001042249.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_001042250.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_001042251.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_001042252.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_001042253.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_001042254.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_001042255.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_001042256.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_001042257.1	one of the stabilizing components for the large ribosomal subunit
YP_001042258.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_001042259.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_001042260.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_001042261.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_001042262.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_001042263.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_001042264.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_001042265.1	binds 5S rRNA along with protein L5 and L25
YP_001042266.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_001042267.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_001042268.1	late assembly protein
YP_001042269.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_001042270.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_001042271.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_001042272.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_001042273.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_001042274.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_001042275.1	PFAM: regulatory protein, LuxR; Autoinducer-binding domain protein; KEGG: rsp:RSP_1741 possible LuxR family protein
YP_001042276.1	KEGG: rsp:RSP_1742 serine protease, trypsin family; TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein
YP_001042277.1	PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rsp:RSP_1743 ATPase, AAA family
YP_001042278.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_001042279.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rsp:RSP_1745 pseudouridine synthase
YP_001042280.1	PFAM: ATP12 ATPase; KEGG: rsp:RSP_1746 hypothetical protein
YP_001042281.1	TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: rsp:RSP_1747 ABC glutamate/glutamine/aspartate/asparagine transporter, periplasmic substrate-binding protein
YP_001042282.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1748 ABC glutamate/glutamine/aspartate/asparagine transporter, inner membrane subunit BztB
YP_001042283.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1749 ABC glutamate/glutamine/aspartate/asparagine transporter, inner membrane subunit BztC
YP_001042284.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_1750 ABC glutamate/glutamine/aspartate/asparagine transporter, ATPase subunit BztD
YP_001042285.1	PFAM: ferredoxin; KEGG: rsp:RSP_1751 putative 2Fe-2S ferredoxin protein
YP_001042286.1	PFAM: creatinase; peptidase M24; KEGG: rsp:RSP_1752 putative creatinase
YP_001042287.1	KEGG: rsp:RSP_1753 hypothetical protein
YP_001042288.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rsp:RSP_1754 hypothetical protein
YP_001042289.1	PFAM: protein of unknown function DUF861, cupin_3; KEGG: rsp:RSP_1755 hypothetical protein
YP_001042290.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_001042291.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_001042292.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_001042293.1	KEGG: rsp:RSP_1759 hypothetical protein
YP_001042294.1	PFAM: protein of unknown function DUF1523; KEGG: rsp:RSP_1760 hypothetical protein
YP_001042295.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_001042296.1	KEGG: rsp:RSP_1762 hypothetical protein
YP_001042297.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_001042298.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_001042299.1	PFAM: ribosomal protein L35; KEGG: rsp:RSP_1765 50S ribosomal protein L35
YP_001042300.1	PFAM: pyruvate kinase; KEGG: rsp:RSP_1766 pyruvate kinase
YP_001042301.1	PFAM: N-formylglutamate amidohydrolase; KEGG: rsp:RSP_1767 possible N-formylglutamate amidohydrolase
YP_001042302.1	PFAM: aminotransferase, class IV; KEGG: rsp:RSP_1768 aminotransferase class IV , putative D-alanine aminotransferase
YP_001042303.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rsp:RSP_1769 mandelate racemase / muconate lactonizing enzyme
YP_001042304.1	PFAM: protein of unknown function DUF1611; KEGG: rsp:RSP_1770 hypothetical protein
YP_001042305.1	PFAM: HpcH/HpaI aldolase; KEGG: rsp:RSP_1771 beta subunit of citrate lyase
YP_001042306.1	PFAM: transcription activator, effector binding; KEGG: rsp:RSP_6018 hypothetical protein
YP_001042307.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_001042308.1	PFAM: small multidrug resistance protein; KEGG: rsp:RSP_1773 multidrug efflux pump, SMR family, DMT superfamily
YP_001042309.1	PFAM: glucose sorbosone dehydrogenase; KEGG: rsp:RSP_1774 putative glucose dehydrogenase B
YP_001042310.1	KEGG: rsp:RSP_1775 hypothetical protein
YP_001042311.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_001042312.1	PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: rsp:RSP_1777 putative electron transfer flavoprotein-ubiquinone oxidoreductase precursor
YP_001042313.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rsp:RSP_1778 TPR domain protein
YP_001042314.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_001042315.1	KEGG: rsp:RSP_1780 hypothetical protein
YP_001042316.1	KEGG: rsp:RSP_1781 putative membrane-anchored oxidoreductase; similar to L-sorbosone dehydrogenase
YP_001042317.1	KEGG: rsp:RSP_1782 hypothetical membrane protein
YP_001042318.1	KEGG: rsp:RSP_1783 predicted membrane protein
YP_001042319.1	PFAM: response regulator receiver; KEGG: rsp:RSP_1784 response regulator receiver domain protein
YP_001042320.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rsp:RSP_1785 putative transcriptional regulatory protein
YP_001042321.1	TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing enzyme; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: rsp:RSP_1786 multi-component fructose specific PTS system protein, (PtsI, HPr, and IIA domains)
YP_001042322.1	PFAM: PfkB domain protein; KEGG: rsp:RSP_1787 probable 1-phosphofructokinase
YP_001042323.1	TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: rsp:RSP_1788 PTS system, fructose-specificIIBC component
YP_001042324.1	PFAM: protein of unknown function UPF0060; KEGG: rsp:RSP_1789 hypothetical protein
YP_001042325.1	PFAM: regulatory protein, MerR; KEGG: rsp:RSP_1790 probable transcriptional regulator
YP_001042326.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rsp:RSP_1791 heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
YP_001042327.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: rsp:RSP_1793 single-strand DNA binding protein
YP_001042328.1	PFAM: Lytic transglycosylase, catalytic; KEGG: rsp:RSP_1794 putative lytic transglycosylase
YP_001042329.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001042330.1	PFAM: superoxide dismutase, copper/zinc binding; KEGG: rsp:RSP_1796 putative copper/zinc superoxide dismutase
YP_001042331.1	TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: rsp:RSP_1797 putative preprotein translocase subunit YajC
YP_001042332.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_001042333.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_001042334.1	PFAM: protein of unknown function DUF498; KEGG: rsp:RSP_1800 hypothetical protein
YP_001042335.1	ATP-binding protein; required for proper cytochrome c maturation
YP_001042336.1	TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: rsp:RSP_1802 ABC heme exporter, inner membrane subunit CcmB
YP_001042337.1	TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: rsp:RSP_1803 ABC heme exporter, inner membrane subunit CcmC
YP_001042338.1	PFAM: Heme exporter protein D (CcmD); KEGG: rsp:RSP_1804 heme exporter protein D
YP_001042339.1	TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: rsp:RSP_1805 probable thiol-disulfide interchange protein
YP_001042340.1	Catalyzes the conversion of citrate to isocitrate
YP_001042341.1	PFAM: protein of unknown function DUF1223; KEGG: rsp:RSP_1807 hypothetical protein
YP_001042342.1	KEGG: rsp:RSP_6019 hypothetical protein
YP_001042343.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001042344.1	PFAM: Rhomboid family protein; KEGG: sil:SPO0393 rhomboid family protein
YP_001042345.1	TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: rsp:RSP_1810 putative virulence factor, MviN
YP_001042346.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_001042347.1	KEGG: rsp:RSP_1812 hypothetical protein
YP_001042348.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rsp:RSP_1813 hypothetical protein
YP_001042349.1	PFAM: protein of unknown function UPF0102; KEGG: rsp:RSP_1814 putative endonuclease
YP_001042350.1	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_001042351.1	KEGG: rsp:RSP_1816 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_001042352.1	KEGG: rsp:RSP_1817 hypothetical protein
YP_001042353.1	TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: rsp:RSP_1818 Fe2+ transport system protein B
YP_001042354.1	PFAM: FeoA family protein; KEGG: rsp:RSP_1819 ferrous iron transport protein A
YP_001042355.1	PFAM: FeoA family protein; KEGG: rsp:RSP_6020 ferrous iron transport protein A
YP_001042356.1	PFAM: protein of unknown function DUF892; KEGG: rsp:RSP_1820 hypothetical protein
YP_001042357.1	KEGG: rsp:RSP_1821 molybdopterin-containing oxidoreductase, probable formate dehydrogenase; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region
YP_001042358.1	TIGRFAM: NAD+ synthetase; PFAM: NAD+ synthase; CinA domain protein; KEGG: rsp:RSP_1822 hypothetical protein
YP_001042359.1	forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis
YP_001042360.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsp:RSP_1824 zinc-containing alcohol dehydrogenase
YP_001042361.1	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rsp:RSP_1825 probable modulator of DNA gyrase
YP_001042362.1	PFAM: cytochrome c oxidase, subunit II; cytochrome C oxidase subunit II, transmembrane region; KEGG: rsp:RSP_1826 cytochrome c oxidase polypeptide II precursor (cytochrome AA3 subunit 2)
YP_001042363.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_001042364.1	KEGG: rsp:RSP_6021 hypothetical protein
YP_001042365.1	involved in the insertion of copper into subunit I of cytochrome C oxidase
YP_001042366.1	PFAM: cytochrome c oxidase, subunit III; KEGG: rsp:RSP_1829 cytochrome c oxidase, aa3-type, subunit III
YP_001042367.1	KEGG: rsp:RSP_1830 SURF1 protein
YP_001042368.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_001042369.1	PFAM: peptidase M16 domain protein; KEGG: rsp:RSP_1832 peptidase, M16 family
YP_001042370.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_1833 putative ribosomal-protein-alanine acetyltransferase
YP_001042371.1	KEGG: rsp:RSP_1834 hypothetical protein
YP_001042372.1	PFAM: FAD linked oxidase domain protein; KEGG: rsp:RSP_1835 putative FAD dependent oxidoreductase
YP_001042373.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_001042374.1	Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate
YP_001042375.1	PFAM: flavin reductase domain protein, FMN-binding; KEGG: rsp:RSP_1838 hypothetical protein
YP_001042376.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_1839 putative acetyltransferase, GNAT family
YP_001042377.1	KEGG: rsp:RSP_1840 hypothetical protein
YP_001042378.1	PFAM: Intracellular septation protein A; KEGG: rsp:RSP_1841 probable intracellular septation protein
YP_001042379.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_1842 possible transporter, DME family, DMT superfamily
YP_001042380.1	KEGG: rsp:RSP_1843 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase
YP_001042381.1	KEGG: rsp:RSP_1844 hypothetical protein
YP_001042382.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_001042383.1	KEGG: rsp:RSP_1846 hypothetical protein
YP_001042384.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_001042385.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001042386.1	KEGG: rsp:RSP_1849 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein
YP_001042387.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: rsp:RSP_1850 phosphoenolpyruvate-protein phosphotransferase, PtsI(Ntr)
YP_001042388.1	KEGG: rsp:RSP_1851 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes
YP_001042389.1	similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis
YP_001042390.1	PFAM: cation transporter; KEGG: rsp:RSP_1853 potassium uptake transporter, transmembrane component, TrkH
YP_001042391.1	PFAM: cation transporter; KEGG: rsp:RSP_1854 potassium uptake transporter, transmembrane component, TrkH
YP_001042392.1	PFAM: Peptidoglycan-binding domain 1 protein; Sporulation domain protein; KEGG: rsp:RSP_1855 hypothetical protein
YP_001042393.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_001042394.1	KEGG: rsp:RSP_1857 hypothetical protein
YP_001042395.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_001042396.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001042397.1	PFAM: cell wall hydrolase, SleB; KEGG: rsp:RSP_1860 hypothetical protein
YP_001042398.1	PFAM: dihydroneopterin aldolase; KEGG: rsp:RSP_1861 probable dihydroneopterin aldolase
YP_001042399.1	KEGG: rsp:RSP_1862 dihydropteroate synthase, DhpS; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS
YP_001042400.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_001042401.1	KEGG: rsp:RSP_1864 hypothetical protein
YP_001042402.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_001042403.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: rsp:RSP_1866 transcriptional regulator, AsnC family
YP_001042404.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: rsp:RSP_1867 transcriptional regulator, AsnC family
YP_001042405.1	PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rsp:RSP_1868 serine-pyruvate aminotransferase
YP_001042406.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: rsp:RSP_1869 2-octaprenyl-6-methoxyphenyl hydroxylase
YP_001042407.1	KEGG: rsp:RSP_6022 hypothetical protein
YP_001042408.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rsp:RSP_1870 predicted hydrolase
YP_001042409.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_1871 transcriptional regulator, GntR family
YP_001042410.1	PFAM: glycosyl transferase, family 2; General secretory system II, protein E domain protein; KEGG: rsp:RSP_1872 glycosyl transferase, family 2
YP_001042411.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rsp:RSP_1873 hypothetical protein
YP_001042412.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_001042413.1	PFAM: GatB/Yqey domain protein; KEGG: rsp:RSP_1875 hypothetical protein
YP_001042414.1	KEGG: rsp:RSP_1876 hypothetical protein
YP_001042415.1	PFAM: cytochrome c oxidase, subunit I; KEGG: rsp:RSP_1877 cytochrome c oxidase, aa3 type, subunit I
YP_001042416.1	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein
YP_001042417.1	PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rsp:RSP_1880 hypothetical protein
YP_001042418.1	KEGG: rsp:RSP_1882 ABC polyamine/opine transporter, ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase
YP_001042419.1	KEGG: rsp:RSP_1883 ABC polyamine/opine transporter, periplasmic substrate-binding protein
YP_001042420.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1884 ABC polyamine/opine transporter, inner membrane subunit
YP_001042421.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1886 ABC polyamine/opine transporter, inner membrane subunit
YP_001042422.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_001042423.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_1888 possible acetyltransferase (GNAT) family
YP_001042424.1	PFAM: protein of unknown function UPF0005; KEGG: rsp:RSP_1889 hypothetical protein
YP_001042425.1	KEGG: rsp:RSP_6024 hypothetical protein
YP_001042426.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_1890 transcriptional regulator, LysR family
YP_001042427.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsp:RSP_1891 zinc-binding dehydrogenase
YP_001042428.1	PFAM: helix-turn-helix domain protein; KEGG: rsp:RSP_1892 putative Cro/CI transcriptional regulator
YP_001042429.1	PFAM: inositol monophosphatase; KEGG: rsp:RSP_1893 inositol monophosphatase family protein
YP_001042431.1	PFAM: cell wall hydrolase, SleB; KEGG: rsp:RSP_1894 hypothetical protein
YP_001042432.1	PFAM: MscS Mechanosensitive ion channel; KEGG: rsp:RSP_1895 small-conductance mechanosensitive ion channel
YP_001042433.1	Catalyzes the deamination of guanine
YP_001042434.1	TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: rsp:RSP_1897 Mg/Co/Ni transporter, MgtE
YP_001042435.1	PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: rsp:RSP_1898 putative 5-formyltetrahydrofolate cyclo-ligase
YP_001042436.1	KEGG: rsp:RSP_1899 predicted ATPase
YP_001042437.1	PFAM: peptidase A24A, prepilin type IV; KEGG: rsp:RSP_1900 putative prepilin peptidase CpaA
YP_001042438.1	KEGG: rsp:RSP_1901 hypothetical protein with TPR repeat
YP_001042439.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rsp:RSP_1902 conserved hypothetical protein with TPR repeat
YP_001042440.1	PFAM: type II secretion system protein; KEGG: rsp:RSP_1903 putative Flp pilus assembly protein TadC
YP_001042441.1	PFAM: type II secretion system protein; KEGG: rsp:RSP_1904 putative Flp pilus assembly protein TadB
YP_001042442.1	PFAM: type II secretion system protein E; KEGG: rsp:RSP_1905 putative Flp pilus assembly protein ATPase CpaF
YP_001042443.1	KEGG: rsp:RSP_1907 putative Flp pilus assembly protein ATPase CpaE
YP_001042444.1	PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_1908 outer membrane protein, OmpA/MotB family
YP_001042445.1	PFAM: type II and III secretion system protein; transport-associated; KEGG: rsp:RSP_1909 outer membrane general secretion pathway protein, secretin
YP_001042446.1	KEGG: rsp:RSP_1910 putative Flp pilus assembly protein CpaB
YP_001042447.1	KEGG: rsp:RSP_6219 hypothetical protein
YP_001042448.1	KEGG: rsp:RSP_6025 hypothetical protein
YP_001042449.1	PFAM: Lytic transglycosylase, catalytic; KEGG: rsp:RSP_1911 possible soluble lytic murein transglycosylase
YP_001042450.1	KEGG: rsp:RSP_1912 hypothetical protein
YP_001042451.1	KEGG: rsp:RSP_1913 3-oxoadipate CoA-transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase
YP_001042452.1	KEGG: rsp:RSP_1914 3-ketoacid CoA transferase alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase
YP_001042453.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_1915 transcriptional regulator, LysR family
YP_001042454.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_6026 putative acetyltransferase
YP_001042455.1	PFAM: DSBA oxidoreductase; KEGG: rsp:RSP_1916 possible 2-hydroxychromene-2-carboxylate isomerase
YP_001042456.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: rsp:RSP_1917 hypothetical protein
YP_001042457.1	KEGG: rsp:RSP_1918 predicted alpha/beta hydrolase
YP_001042458.1	KEGG: rsp:RSP_1919 hypothetical protein
YP_001042459.1	TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: rsp:RSP_1920 pyridoxal/pyridoxine/pyridoxamine kinase
YP_001042460.1	PFAM: 3-alpha; MOSC domain containing protein; KEGG: rsp:RSP_1921 MOSC domain protein
YP_001042461.1	PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rsp:RSP_1922 transcriptional regulator, GntR family, with aminotransferase domain
YP_001042462.1	KEGG: rsp:RSP_1923 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB
YP_001042463.1	PFAM: BioY protein; KEGG: rsp:RSP_1924 BioY family protein
YP_001042464.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_1925 transcriptional regulator, GntR family
YP_001042465.1	TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: rsp:RSP_1926 tRNA-dihydrouridine synthase
YP_001042466.1	PFAM: protein of unknown function DUF81; KEGG: rsp:RSP_1927 hypothetical protein
YP_001042467.1	unwinds double stranded DNA
YP_001042468.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001042469.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_001042470.1	PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rsp:RSP_1931 probable ATPase, AAA family
YP_001042471.1	PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor, type A; KEGG: rsp:RSP_1932 hypothetical protein
YP_001042472.1	KEGG: rsp:RSP_6241 hypothetical protein
YP_001042473.1	PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_1933 outer membrane protein, OmpA/MotB family
YP_001042474.1	PFAM: protein of unknown function DUF182; KEGG: sil:SPO2640 XdhC/CoxI family protein
YP_001042475.1	PFAM: molybdopterin binding domain; KEGG: rsp:RSP_1936 molybdopterin biosynthesis protein
YP_001042476.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_001042477.1	KEGG: rsp:RSP_1938 conserved hypothetical protein
YP_001042478.1	PFAM: Oxidoreductase FAD-binding domain protein; KEGG: rsp:RSP_1939 NADPH-ferredoxin reductase
YP_001042479.1	KEGG: rsp:RSP_1940 hypothetical protein
YP_001042480.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_001042481.1	PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: rsp:RSP_1942 sulfite/nitrite reductase hemoprotein subunit
YP_001042482.1	KEGG: rsp:RSP_1943 hypothetical protein
YP_001042483.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rsp:RSP_1944 uroporphiryn-III C-methyltransferase/siroheme synthase
YP_001042484.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: rsp:RSP_1945 transcriptional regulator, AsnC family
YP_001042485.1	PFAM: cytochrome P450; KEGG: rsp:RSP_1946 cytochrome P450 hydroxylase
YP_001042486.1	PFAM: triosephosphate isomerase; KEGG: rsp:RSP_1947 triosephosphate isomerase
YP_001042487.1	TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rsp:RSP_1948 protein of unknown function, HesB/YadR/YfhF
YP_001042488.1	PFAM: protein of unknown function DUF59; KEGG: rsp:RSP_1949 hypothetical protein
YP_001042489.1	KEGG: rsp:RSP_1950 hypothetical protein
YP_001042490.1	PFAM: protein of unknown function DUF982; KEGG: rsp:RSP_1951 hypothetical protein
YP_001042491.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rsp:RSP_1952 cold-shock DNA-binding domain protein
YP_001042492.1	PFAM: cyclic nucleotide-binding; KEGG: rsp:RSP_1953 transcriptional regulator, CRP/FNR family
YP_001042493.1	KEGG: rsp:RSP_1954 hypothetical protein
YP_001042494.1	KEGG: rsp:RSP_1955 hypothetical protein
YP_001042495.1	KEGG: rsp:RSP_1956 hypothetical protein
YP_001042496.1	KEGG: rsp:RSP_1957 hypothetical protein
YP_001042499.1	KEGG: rsp:RSP_1962 hypothetical protein
YP_001042500.1	KEGG: rsp:RSP_1963 hypothetical protein
YP_001042501.1	KEGG: sil:SPOA0091 IS3 family transposase orfA
YP_001042503.1	PFAM: secretion protein HlyD family protein; KEGG: rsp:RSP_1965 putative membrane fusion protein family member
YP_001042504.1	PFAM: phage integrase family protein; KEGG: nwi:Nwi_0275 phage integrase
YP_001042506.1	PFAM: glycoside hydrolase, family 16
YP_001042508.1	PFAM: Collagen triple helix repeat
YP_001042510.1	KEGG: bqu:BQ11590 phage related lysozyme
YP_001042514.1	KEGG: rsp:RSP_3631 hypothetical protein
YP_001042515.1	KEGG: rsp:RSP_2990 hypothetical protein
YP_001042516.1	KEGG: aba:Acid345_3157 hypothetical protein
YP_001042519.1	KEGG: rsp:RSP_2059 potential phage tail tape measure protein
YP_001042523.1	KEGG: rsp:RSP_6012 hypothetical protein
YP_001042524.1	TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: rsp:RSP_1640 hypothetical protein
YP_001042525.1	KEGG: rsp:RSP_2066 hypothetical protein
YP_001042526.1	KEGG: sit:TM1040_1667 phage conserved hypothetical protein, phiE125 gp8
YP_001042527.1	KEGG: sgl:SG0722 phage major head protein
YP_001042528.1	PFAM: peptidase S14, ClpP; KEGG: rsp:RSP_2068 putative ClpP-like protease
YP_001042529.1	TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: pde:Pden_0989 phage portal protein, HK97 family
YP_001042530.1	PFAM: phage Terminase; KEGG: son:SO2967 hypothetical phage terminase large subunit
YP_001042531.1	TIGRFAM: phage terminase, small subunit, putative, P27 family; PFAM: phage terminase, small subunit, putative, P27; KEGG: dvu:DVU1504 terminase, small subunit
YP_001042537.1	KEGG: pde:Pden_2067 hypothetical protein
YP_001042538.1	PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: hch:HCH_05682 DNA modification methylase
YP_001042539.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: hch:HCH_10016 restriction endonuclease
YP_001042540.1	KEGG: hch:HCH_02910 hypothetical protein
YP_001042544.1	PFAM: protein of unknown function DUF1376; KEGG: mlo:mll2129 hypothetical protein
YP_001042545.1	PFAM: MT-A70 family protein; KEGG: sit:TM1040_1679 MT-A70
YP_001042546.1	KEGG: rsp:RSP_3775 hypothetical protein
YP_001042547.1	PFAM: endodeoxyribonuclease RusA; KEGG: nar:Saro_3008 endodeoxyribonuclease RusA
YP_001042549.1	SMART: helix-turn-helix domain protein
YP_001042550.1	PFAM: C-5 cytosine-specific DNA methylase; KEGG: sgl:SG0727 phage methyltransferase
YP_001042551.1	KEGG: gox:GOX2479 hypothetical protein
YP_001042552.1	KEGG: mes:Meso_1188 hypothetical protein
YP_001042553.1	KEGG: nfa:nfa14870 hypothetical protein
YP_001042555.1	PFAM: Arc domain protein DNA binding domain protein
YP_001042556.1	PFAM: ribonuclease H
YP_001042561.1	PFAM: phage integrase family protein; KEGG: rsp:RSP_1968 possible integrase/recombinase
YP_001042562.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_001042563.1	TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: rsp:RSP_1970 phosphoribosylglycinamide formyltransferase
YP_001042564.1	TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: rsp:RSP_1971 ribonuclease D
YP_001042565.1	KEGG: rsp:RSP_1972 hypothetical protein
YP_001042566.1	PFAM: Fe-S metabolism associated SufE; KEGG: rsp:RSP_1973 probable SufE protein
YP_001042567.1	PFAM: protein of unknown function DUF427; KEGG: rsp:RSP_1974 hypothetical protein
YP_001042568.1	PFAM: creatinase; peptidase M24; KEGG: rsp:RSP_1975 aminopeptidase P
YP_001042569.1	KEGG: rsp:RSP_1976 aerobic cobalt chelatase, CobT subunit; PFAM: Cobalt chelatase, CobT subunit; SMART: von Willebrand factor, type A
YP_001042570.1	KEGG: rsp:RSP_6027 hypothetical protein
YP_001042571.1	KEGG: rsp:RSP_6028 hypothetical protein
YP_001042572.1	KEGG: rsp:RSP_1977 cobalt chelatase, CobS small subunit; TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities, AAA_5
YP_001042573.1	PFAM: heat shock protein DnaJ domain protein; KEGG: rsp:RSP_1978 molecular chaperone, DnaJ family
YP_001042574.1	PFAM: BolA family protein; KEGG: rsp:RSP_1979 stress induced morphogen, BolA
YP_001042575.1	catalyzes the formation of malate from glyoxylate and acetyl-CoA
YP_001042576.1	PFAM: DNA photolyase domain protein; KEGG: rsp:RSP_1981 deoxyribodipyrimidine photolyase
YP_001042577.1	TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: rsp:RSP_1982 aminopeptidase N
YP_001042578.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: rsp:RSP_1983 phospholipid/glycerol acyltransferase
YP_001042579.1	catalyzes the formation of histidinol phosphate and 2-oxoglutarate from glutamate and imidazole acetol-phosphate
YP_001042580.1	KEGG: rsp:RSP_1985 hypothetical protein
YP_001042581.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001042582.1	KEGG: rsp:RSP_1987 hypothetical protein
YP_001042583.1	KEGG: rsp:RSP_1988 hypothetical protein
YP_001042584.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_001042585.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: rsp:RSP_1990 transcriptional regulator, AsnC family
YP_001042586.1	PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rsp:RSP_1991 putative ornithine decarboxylase
YP_001042587.1	KEGG: rsp:RSP_1992 hypothetical protein
YP_001042588.1	TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rsp:RSP_1993 hypothetical protein
YP_001042589.1	KEGG: rsp:RSP_1994 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase
YP_001042590.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_001042591.1	PFAM: ComEC/Rec2-related protein; KEGG: rsp:RSP_1996 putative competence protein
YP_001042592.1	Represses a number of genes involved in the response to DNA damage
YP_001042593.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: rsp:RSP_1998 molybdenum cofactor biosynthesis protein A
YP_001042594.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_001042595.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_001042596.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001042597.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_001042598.1	PFAM: protein of unknown function DUF610, YibQ; KEGG: rsp:RSP_2003 YibQ protein
YP_001042599.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_001042600.1	KEGG: rsp:RSP_2005 possible peptidyl-prolyl cis-trans isomerse
YP_001042601.1	PFAM: AsmA family protein; KEGG: rsp:RSP_2006 hypothetical protein
YP_001042602.1	PFAM: GcrA cell cycle regulator; KEGG: rsp:RSP_2007 conservd hypothetical protein
YP_001042603.1	DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_001042604.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_001042605.1	KEGG: rsp:RSP_2010 hypothetical protein
YP_001042606.1	PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: rsp:RSP_2011 putative transcription elongation factor
YP_001042607.1	PFAM: NUDIX hydrolase; KEGG: rsp:RSP_2012 NUDIX hydrolase, MutT
YP_001042608.1	KEGG: rsp:RSP_2013 DEAD/DEAH box helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like
YP_001042609.1	KEGG: rsp:RSP_2014 hypothetical protein
YP_001042610.1	functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins
YP_001042611.1	required for 70S ribosome assembly
YP_001042612.1	KEGG: rsp:RSP_6029 hypothetical protein
YP_001042613.1	PFAM: protein of unknown function DUF461; KEGG: rsp:RSP_2017 hypothetical protein
YP_001042614.1	KEGG: rsp:RSP_2018 hypothetical protein
YP_001042615.1	KEGG: rsp:RSP_2019 hypothetical protein
YP_001042616.1	KEGG: rsp:RSP_2020 DHC, diheme cytochrome c
YP_001042617.1	PFAM: cytochrome c, monohaem; KEGG: rsp:RSP_2021 mono-heme class I cytochrome c
YP_001042618.1	PFAM: cytochrome B561; KEGG: rsp:RSP_2022 cytochrome b/diheme cytochrome c hybrid protein
YP_001042619.1	KEGG: rsp:RSP_2023 hypothetical protein
YP_001042620.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rsp:RSP_2024 cold shock protein CspA
YP_001042621.1	KEGG: rsp:RSP_2025 hypothetical protein
YP_001042622.1	SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: rsp:RSP_2026 transcriptional regulator, AraC family
YP_001042623.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_2027 transcriptional regulator, LysR family
YP_001042624.1	KEGG: rsp:RSP_2028 hypothetical protein
YP_001042625.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_2029 short chain dehydrogenase
YP_001042626.1	PFAM: HWE histidine kinase; KEGG: rsp:RSP_2030 putative sensor histidine kinase
YP_001042627.1	KEGG: rsp:RSP_2032 putative hypothetical Gifsy-1 prophage protein
YP_001042628.1	KEGG: rsp:RSP_2033 hypothetical protein
YP_001042629.1	PFAM: Abortive infection protein; KEGG: rsp:RSP_2034 possible CAAX amino terminal protease family
YP_001042630.1	KEGG: rsp:RSP_6030 hypothetical protein
YP_001042631.1	KEGG: rsp:RSP_2035 hypothetical protein
YP_001042632.1	KEGG: rsp:RSP_2036 putative ECF/RNA polymerase sigma factor protein
YP_001042633.1	KEGG: rsp:RSP_2037 hypothetical protein
YP_001042635.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_2038 possible acetyltransferase
YP_001042636.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_2039 short chain dehydrogenase
YP_001042637.1	KEGG: sil:SPOA0091 IS3 family transposase orfA
YP_001042638.1	KEGG: rsp:RSP_2080 putative tyrosine recombinase
YP_001042639.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_2081 putative acetyltransferase, GNAT family
YP_001042640.1	PFAM: ETC complex I subunit conserved region; KEGG: rsp:RSP_2082 putative NADH-ubiquinone oxidoreductase-related protein
YP_001042641.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_001042642.1	KEGG: rsp:RSP_2084 hypothetical protein
YP_001042644.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rsp:RSP_2086 putative antibiotic biosynthesis monooxygenase
YP_001042645.1	KEGG: rsp:RSP_2087 hypothetical protein
YP_001042646.1	PFAM: Entericidin EcnAB; KEGG: rsp:RSP_6220 hypothetical protein
YP_001042647.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_001042648.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_001042649.1	PFAM: UvrD/REP helicase; KEGG: rsp:RSP_2092 putative UvrD/DNA helicase II
YP_001042650.1	TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: rsp:RSP_2091 putative benzoate transporter, BenE
YP_001042651.1	PFAM: protein of unknown function DUF1127; KEGG: rsp:RSP_6037 hypothetical protein
YP_001042652.1	KEGG: rsp:RSP_2093 putative Mrp (multidrug resistance-associated proteins) family protein
YP_001042654.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_001042655.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: rsp:RSP_6038 methyltransferase MraW/YabC
YP_001042656.1	KEGG: rsp:RSP_2097 putative FtsL
YP_001042657.1	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: rsp:RSP_2098 cell division protein FtsI/penicillin-binding protein 2
YP_001042658.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_001042659.1	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rsp:RSP_2100 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase
YP_001042660.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_001042661.1	PFAM: transport-associated; KEGG: rsp:RSP_2102 hypothetical protein
YP_001042662.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_001042663.1	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: rsp:RSP_2104 hypothetical protein
YP_001042664.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rsp:RSP_2105 hypothetical protein
YP_001042665.1	TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: rsp:RSP_2106 cell division protein FtsW
YP_001042666.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_001042667.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_001042668.1	KEGG: rsp:RSP_2109 hypothetical protein
YP_001042669.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_001042670.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_001042671.1	PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: rsp:RSP_2112 cell division septal protein FtsQ
YP_001042672.1	PFAM: cell division protein FtsA; KEGG: rsp:RSP_2113 cell division protein FtsA
YP_001042673.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_001042674.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_001042675.1	PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rsp:RSP_2117 putative ComL lipoprotein
YP_001042676.1	TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rsp:RSP_2118 DNA repair protein RecN
YP_001042677.1	KEGG: rsp:RSP_2119 hypothetical protein
YP_001042678.1	PFAM: FAD linked oxidase domain protein; KEGG: rsp:RSP_2120 putative D-lactate dehydrogenase (cytochrome), FAD/FMN-containing oxidoreductase
YP_001042679.1	KEGG: rsp:RSP_2121 hypothetical protein
YP_001042680.1	PFAM: Methionine synthase, B12-binding module, cap domain protein; cobalamin B12-binding domain protein; KEGG: rsp:RSP_2122 putative dimethylamine corrinoid protein
YP_001042681.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rsp:RSP_2123 radical SAM domain protein
YP_001042682.1	catalyzes the formation of methionine from L-homocysteine and S-adenosyl-L-methionine
YP_001042683.1	PFAM: protein of unknown function DUF1476; KEGG: rsp:RSP_2125 hypothetical protein
YP_001042684.1	KEGG: rsp:RSP_2126 SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase
YP_001042685.1	TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: rsp:RSP_2127 component of phosphoribosylformylglycinamidine (FGAM) synthetase
YP_001042686.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_001042687.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_2129 sensor histidine kinase
YP_001042688.1	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rsp:RSP_2130 two component, sigma54 specific transcriptional regulator, fis family
YP_001042689.1	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: rsp:RSP_2131 ribonuclease E
YP_001042690.1	PFAM: SirA family protein; KEGG: rsp:RSP_2132 protein of unknown function UPF0033
YP_001042691.1	PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rsp:RSP_2134 putative cytochrome c-type biogenesis protein CcdA
YP_001042692.1	KEGG: rsp:RSP_2136 hypothetical protein
YP_001042693.1	KEGG: rsp:RSP_2135 hypothetical protein
YP_001042694.1	KEGG: rsp:RSP_2137 hypothetical protein
YP_001042695.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_001042696.1	PFAM: protein of unknown function DUF1321; KEGG: rsp:RSP_2139 hypothetical protein
YP_001042697.1	KEGG: rsp:RSP_2140 putative von Willebrand factor type A domain protein
YP_001042698.1	KEGG: rsp:RSP_2141 ABC polyamine transporter, periplasmic substrate-binding protein
YP_001042699.1	PFAM: aminotransferase, class V; KEGG: rsp:RSP_2142 NifS-related protein
YP_001042700.1	PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: rsp:RSP_2143 DNA photolyase, cryptochrome 1 apoprotein (blue light photoreceptor)
YP_001042701.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rsp:RSP_2144 cyclopropane-fatty-acyl-phospholipid synthase CfaS
YP_001042702.1	KEGG: rsp:RSP_2145 tellurite resistance protein
YP_001042703.1	PFAM: NUDIX hydrolase; KEGG: rsp:RSP_2146 tellurite resistance protein
YP_001042704.1	CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis
YP_001042705.1	PFAM: MscS Mechanosensitive ion channel; KEGG: rsp:RSP_2148 small conductance mechanosensitive ion channel
YP_001042706.1	PFAM: Threonyl/alanyl tRNA synthetase, SAD; KEGG: rsp:RSP_2149 alanyl-transfer RNA synthetase domain protein
YP_001042707.1	PFAM: glycosyl transferase, family 2; KEGG: rsp:RSP_2150 predicted glycosyl transferase, family 2
YP_001042708.1	KEGG: rsp:RSP_2151 putative DedA family, membrane protein
YP_001042709.1	KEGG: rsp:RSP_2152 putative ceramide glucosyltransferase
YP_001042710.1	PFAM: metallophosphoesterase; KEGG: rsp:RSP_2153 hypothetical protein
YP_001042711.1	KEGG: rsp:RSP_2154 hypothetical protein
YP_001042712.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_001042713.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2156 ABC transporter, inner membrane subunit
YP_001042714.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2157 ABC transporter, inner membrane subunit
YP_001042715.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_2158 ABC transporter, periplasmic solute-binding protein
YP_001042716.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_2159 ABC transporter, ATPase subunit
YP_001042717.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_2160 short-chain dehydrogenase/reductase
YP_001042718.1	PFAM: phosphoesterase, PA-phosphatase related; KEGG: rsp:RSP_2161 efflux channel
YP_001042719.1	KEGG: rsp:RSP_2163 lytic murein transglycosylase, putative
YP_001042720.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: rsp:RSP_2165 transcriptional regulator, AsnC family
YP_001042721.1	proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain
YP_001042722.1	PFAM: Rhomboid family protein; KEGG: rsp:RSP_2167 hypothetical protein
YP_001042723.1	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: rsp:RSP_2168 hypothetical protein
YP_001042724.1	PFAM: inositol monophosphatase; KEGG: rsp:RSP_2169 inositol monophosphatase family protein
YP_001042725.1	PFAM: phosphate transporter; KEGG: rsp:RSP_2170 phosphate transporter, Pit family
YP_001042726.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_2171 transcriptional regulator, LysR family
YP_001042727.1	TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: rsp:RSP_2172 5,10-methylenetetrahydrofolate reductase
YP_001042728.1	PFAM: BioY protein; KEGG: rsp:RSP_2173 putative biotin biosynthesis protein BioY
YP_001042729.1	PFAM: cobalt transport protein; KEGG: rsp:RSP_2174 putative ABC transporter, inner membrane subunit
YP_001042730.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2175 ABC transporter, ATPase subunit
YP_001042731.1	catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate
YP_001042732.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rsp:RSP_2177 DNA processing protein
YP_001042733.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_001042734.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2179 ABC glycine betaine/L-proline tranporter, ATPase subunit, ProV
YP_001042735.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2180 ABC glycine betaine/L-proline transporter, inner membrane subunit
YP_001042736.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rsp:RSP_2181 ABC glycine betaine/L-proline transporter, periplasmic substrate-binding subunit
YP_001042737.1	HTH-type; bet1; Repressor involved in choline regulation of the bet genes
YP_001042738.1	catalyzes the formation of betaine from betaine aldehyde
YP_001042739.1	catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine
YP_001042740.1	PFAM: nuclease (SNase domain protein); KEGG: rsp:RSP_2185 nuclease (SNase-like)
YP_001042741.1	PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rsp:RSP_2186 transcriptional regulator, MerR family
YP_001042742.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_2187 multidrug efflux pump, major facilitator superfamily (MFS)
YP_001042743.1	PFAM: protein of unknown function DUF486; KEGG: rsp:RSP_2188 hypothetical protein
YP_001042744.1	PFAM: carboxyl transferase; KEGG: rsp:RSP_2189 propionyl-CoA carboxylase beta chain
YP_001042745.1	KEGG: rsp:RSP_6040 hypothetical protein
YP_001042746.1	KEGG: rsp:RSP_2190 hypothetical protein
YP_001042747.1	KEGG: rsp:RSP_6221 hypothetical protein
YP_001042748.1	PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: rsp:RSP_2191 propionyl-CoA carboxylase alpha subunit
YP_001042749.1	KEGG: rsp:RSP_6041 hypothetical protein
YP_001042750.1	MDM; functions in conversion of succinate to propionate
YP_001042751.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_001042752.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_001042753.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_001042754.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rsp:RSP_2196 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase
YP_001042755.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_001042756.1	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: rsp:RSP_2198 hypothetical protein
YP_001042757.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rsp:RSP_2199 putative acyl-CoA dehydrogenase
YP_001042758.1	PFAM: regulatory protein, MerR; KEGG: rsp:RSP_2200 transcriptional regulator, MerR family
YP_001042759.1	PFAM: regulatory protein, MerR; KEGG: rsp:RSP_2201 transcriptional regulator, MerR family
YP_001042760.1	TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rsp:RSP_2202 hypothetical protein
YP_001042761.1	PFAM: thioesterase superfamily protein; KEGG: rsp:RSP_2203 hypothetical protein
YP_001042762.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rsp:RSP_2204 multidrug efflux pump, MATE family
YP_001042763.1	KEGG: rsp:RSP_2205 hypothetical protein
YP_001042764.1	PFAM: protein of unknown function DUF81; KEGG: rsp:RSP_2206 hypothetical protein
YP_001042765.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_001042766.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_2208 ABC sugar transporter, inner membrane subunit
YP_001042767.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_2209 ABC sugar transporter, inner membrane subunit
YP_001042768.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2210 ABC sugar transporter, fused ATPase subunits
YP_001042769.1	PFAM: basic membrane lipoprotein; KEGG: rsp:RSP_2211 ABC transporter, periplasmic substrate-binding protein
YP_001042770.1	TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_2212 putative acetyltransferase
YP_001042771.1	PFAM: peptidase M22, glycoprotease; KEGG: rsp:RSP_2213 hypothetical protein
YP_001042772.1	PFAM: nitrogen-fixing NifU domain protein; KEGG: rsp:RSP_2214 nitrogen-fixing NifU
YP_001042773.1	PFAM: UspA domain protein; KEGG: rsp:RSP_2215 hypothetical protein
YP_001042774.1	PFAM: aminotransferase, class IV; KEGG: rsp:RSP_2216 branched-chain amino acid aminotransferase
YP_001042775.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rsp:RSP_2217 hypothetical protein
YP_001042776.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rsp:RSP_2218 hypothetical protein
YP_001042777.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: rsp:RSP_2219 putative lipid A biosynthesis lauroyl acyltransferase
YP_001042778.1	PFAM: flagellar motor switch protein FliG; KEGG: rsp:RSP_2220 possible flagellar motor switch protein (FliG)
YP_001042779.1	KEGG: rsp:RSP_6042 hypothetical protein
YP_001042780.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_001042781.1	PFAM: protein of unknown function DUF333; KEGG: rsp:RSP_2222 hypothetical protein
YP_001042782.1	PFAM: acriflavin resistance protein; KEGG: rsp:RSP_2223 AcrB/AcrD/AcrF multidrug efflux pump
YP_001042783.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rsp:RSP_2224 multidrug efflux pump, membrane fusion protein (MFP) family
YP_001042784.1	KEGG: rsp:RSP_2225 hypothetical protein
YP_001042785.1	KEGG: rsp:RSP_2226 glycosidase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain
YP_001042786.1	PFAM: Nucleotidyl transferase; KEGG: rsp:RSP_2227 ADP-glucose pyrophosphorylase
YP_001042787.1	TIGRFAM: PAS sensor protein; KEGG: rsp:RSP_2228 PAS domain containing protein
YP_001042788.1	KEGG: rsp:RSP_2229 chemotaxis multidomain, CheB methylesterase/CheR, methylase; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; HWE histidine kinase; PAS fold-4 domain protein; SMART: PAS domain containing protein
YP_001042789.1	KEGG: rsp:RSP_2230 response regulator receiver domain protein
YP_001042790.1	KEGG: rsp:RSP_2231 hypothetical protein
YP_001042791.1	TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rsp:RSP_2232 putative uracil-DNA glycosylase
YP_001042792.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rsp:RSP_2234 predicted DNA-binding protein
YP_001042793.1	PFAM: beta-lactamase; KEGG: rsp:RSP_2235 hypothetical protein
YP_001042794.1	PFAM: regulatory protein, MarR; KEGG: rsp:RSP_2236 transcriptional regulator, MarR family
YP_001042795.1	PFAM: secretion protein HlyD family protein; KEGG: rsp:RSP_2237 membrane fusion protein (MFP) family protein
YP_001042796.1	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_2238 multidrug efflux pump, major facilitator superfamily (MFS)
YP_001042797.1	TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: rsp:RSP_2239 tRNA/rRNA metyltransferase
YP_001042798.1	PFAM: CoA-binding domain protein; KEGG: rsp:RSP_2240 hypothetical protein
YP_001042799.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_001042800.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_001042801.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_001042802.1	KEGG: rsp:RSP_2244 hypothetical protein
YP_001042803.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_001042804.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_001042805.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001042806.1	PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_2249 multidrug (tetracycline) efflux pump, major facilitator superfamily (MFS)
YP_001042807.1	KEGG: rsp:RSP_2250 hypothetical protein
YP_001042808.1	TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: rsp:RSP_2251 putative beta-ketoadipate enol-lactone hydrolase
YP_001042809.1	PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rsp:RSP_2252 threonine dehydratase
YP_001042810.1	PFAM: alpha/beta hydrolase fold; KEGG: rsp:RSP_2253 predicted hydrolase or acyltransferase
YP_001042811.1	KEGG: rsp:RSP_2254 ABC efflux transporter, fused ATPase and inner membrane subunits; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase
YP_001042812.1	activates fatty acids by binding to coenzyme A
YP_001042813.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_001042814.1	PFAM: PfkB domain protein; KEGG: rsp:RSP_2257 putative fructokinase
YP_001042815.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_001042816.1	KEGG: rsp:RSP_2259 transmembrane protein
YP_001042817.1	KEGG: rsp:RSP_2260 hypothetical protein
YP_001042818.1	KEGG: rsp:RSP_2261 antifreeze protein, type I
YP_001042819.1	KEGG: rsp:RSP_2262 hypothetical protein
YP_001042820.1	KEGG: rsp:RSP_2263 hypothetical protein
YP_001042821.1	PFAM: toxic anion resistance family protein; KEGG: rsp:RSP_2264 tellurite resistance protein
YP_001042822.1	KEGG: rsp:RSP_2265 hypothetical protein
YP_001042823.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rsp:RSP_2266 pseudouridine synthase, (predicted)
YP_001042824.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: rsp:RSP_2267 putative cytidine deaminase
YP_001042825.1	PFAM: beta-lactamase domain protein; KEGG: rsp:RSP_2268 metallo beta lactamase superfamily
YP_001042826.1	KEGG: rsp:RSP_6222 hypothetical protein
YP_001042827.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_001042828.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001042829.1	KEGG: rsp:RSP_2271 hypothetical protein
YP_001042830.1	PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: rsp:RSP_2272 N-acetylmuramoyl-L-alanine amidase, family 2
YP_001042831.1	KEGG: rsp:RSP_2273 putative anaerobic phenylacetate CoA ligase
YP_001042832.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2274 ABC branched amino acid transporter family, ATPase subunit
YP_001042833.1	KEGG: rsp:RSP_2275 ABC branched amino acid transporter family, periplasmic substrate-binding subunit
YP_001042834.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_2276 ABC branched amino acid transporter family, inner membrane subunit
YP_001042835.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_2277 ABC branched amino acid transporter family, inner membrane subunit
YP_001042836.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2278 ABC branched amino acid transporter family, ATPase subunit
YP_001042837.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rsp:RSP_2279 long chain acyl-CoA synthetase
YP_001042838.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: rsp:RSP_2280 PAS sensor hybrid histidine kinase
YP_001042839.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rsp:RSP_2281 two-component trancriptional regulator, winged helix family
YP_001042840.1	TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: rsp:RSP_2282 chromate efflux pump, ChrA
YP_001042841.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_001042842.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_001042843.1	dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate
YP_001042844.1	PFAM: Extensin family protein; KEGG: rsp:RSP_2285 conservd hypothetical protein
YP_001042845.1	KEGG: rsp:RSP_2286 hypothetical protein
YP_001042846.1	PFAM: ChaC family protein; KEGG: rsp:RSP_2287 ChaC-like protein
YP_001042847.1	KEGG: rsp:RSP_2288 hypothetical protein
YP_001042848.1	PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_2289 flagellar motor protein
YP_001042850.1	KEGG: rru:Rru_A0676 transposase IS116/IS110/IS902
YP_001042851.1	KEGG: rsp:RSP_2293 chaperonin ClpA/B; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase
YP_001042852.1	PFAM: beta-lactamase domain protein; KEGG: rsp:RSP_2294 putative hydroxyacylglutathione hydrolase (glyoxalase II) (GLX II) protein
YP_001042853.1	KEGG: rsp:RSP_2295 hypothetical protein
YP_001042854.1	TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: rsp:RSP_2296 ATPase, delta (OSCP) subunit
YP_001042855.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_001042856.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_001042857.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_001042858.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex
YP_001042859.1	KEGG: rsp:RSP_2301 phosphoribosyl pyrophosphate synthetase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase
YP_001042860.1	PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rsp:RSP_2302 putative low specificity L-threonine aldolase
YP_001042861.1	PFAM: protein of unknown function UPF0153; KEGG: rsp:RSP_2303 hypothetical protein
YP_001042862.1	TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: rsp:RSP_2304 riboflavin kinase / FAD synthetase = FMN adenylyltransferase, RibF
YP_001042863.1	PFAM: MaoC domain protein dehydratase; KEGG: rsp:RSP_2305 MaoC family protein
YP_001042864.1	TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rsp:RSP_2306 putative HAD superfamily protein
YP_001042865.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_001042866.1	PFAM: GumN family protein; KEGG: rsp:RSP_2309 hypothetical protein
YP_001042867.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_001042868.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth
YP_001042869.1	PFAM: protein of unknown function DUF1058; KEGG: rsp:RSP_2312 hypothetical protein
YP_001042870.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rsp:RSP_2313 2-hydroxyacid dehydrogenase
YP_001042871.1	PFAM: aldo/keto reductase; KEGG: rsp:RSP_2314 oxidoreductase, chromogranin/secretogranin
YP_001042872.1	KEGG: rsp:RSP_2315 hypothetical protein
YP_001042873.1	PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_2316 D-amino acid dehydrogenase
YP_001042874.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: rsp:RSP_2317 iron-containing alcohol dehydrogenase
YP_001042875.1	PFAM: aldehyde dehydrogenase; KEGG: rsp:RSP_2318 putative aldehyde dehydrogenase
YP_001042876.1	PFAM: glutamine synthetase, catalytic region; KEGG: rsp:RSP_2319 glutamine synthetase class-I
YP_001042877.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_2320 TRAP-T family transporter, periplasmic binding protein
YP_001042878.1	PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_2321 putative TRAP-T family transporter, DctM (12TMs) subunit
YP_001042879.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rsp:RSP_2322 TRAP-T family transporter, DctQ (4TMs) subunit
YP_001042880.1	PFAM: N-formylglutamate amidohydrolase; KEGG: rsp:RSP_2323 hypothetical protein
YP_001042881.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: rsp:RSP_2324 transcriptional regulator, RpiR family
YP_001042882.1	TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: rsp:RSP_2325 RodA, rod cell shape determining protein
YP_001042883.1	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: rsp:RSP_2326 cell division protein FtsI
YP_001042884.1	KEGG: rsp:RSP_2327 putative rod shape-determining protein MreD
YP_001042885.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_001042886.1	functions in MreBCD complex in some organisms
YP_001042887.1	KEGG: rsp:RSP_6044 possible serine/alanine racemase VanTc3
YP_001042888.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_001042889.1	TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain protein; KEGG: rsp:RSP_2331 PpaZ, a novel pseudoazurin precursor (blue copper protein)
YP_001042890.1	PFAM: MORN repeat-containing protein; KEGG: rsp:RSP_2332 hypothetical protein
YP_001042891.1	NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_001042892.1	PFAM: PfkB domain protein; KEGG: rsp:RSP_2334 carbohydrate kinase, PfkB
YP_001042893.1	PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: rsp:RSP_2335 trp repressor binding protein WrbA, putative
YP_001042894.1	KEGG: rsp:RSP_6045 hypothetical protein
YP_001042895.1	PFAM: peptidase M48, Ste24p; KEGG: rsp:RSP_2336 hypothetical protein
YP_001042896.1	KEGG: rsp:RSP_2337 hypothetical protein
YP_001042897.1	PFAM: PRC-barrel domain protein; KEGG: rsp:RSP_2338 hypothetical protein
YP_001042898.1	catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit
YP_001042899.1	PFAM: aminotransferase, class I and II; KEGG: rsp:RSP_2341 hypothetical protein
YP_001042900.1	catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively
YP_001042901.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rsp:RSP_2343 putative threonine efflux protein, RhtB family
YP_001042902.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_001042903.1	KEGG: rsp:RSP_2345 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
YP_001042904.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rsp:RSP_2346 cold-shock DNA-binding domain protein
YP_001042905.1	PFAM: protein of unknown function DUF192; KEGG: rsp:RSP_2347 hypothetical protein
YP_001042906.1	PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: rsp:RSP_2362 transcriptional regulator, GntR family
YP_001042907.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_2363 short-chain dehydrogenase/reductase
YP_001042908.1	PFAM: class II aldolase/adducin family protein; KEGG: rsp:RSP_2364 L-fuculose phosphate aldolase (class II)
YP_001042909.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rsp:RSP_2365 ABC sugar (ribose) transporter, periplasmic substrate-binding subunit
YP_001042910.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2366 ABC sugar (ribose) transporter, fused ATPase subunits
YP_001042911.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_2368 ABC sugar (ribose) transporter, inner membrane subunit
YP_001042912.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_2367 ABC sugar (ribose) transporter, inner membrane subunit
YP_001042913.1	PFAM: PfkB domain protein; KEGG: rsp:RSP_2370 putative sugar kinase
YP_001042914.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_2371 3-oxoacyl-(acyl-carrier protein) reductase / short-chain dehydrogenase/reductase SDR
YP_001042915.1	PFAM: aldehyde dehydrogenase; KEGG: rsp:RSP_2372 aldehyde dehydrogenase (NAD-dependent)
YP_001042916.1	PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: rsp:RSP_2373 putative transporter, major facilitator superfamily (MFS)
YP_001042917.1	KEGG: rsp:RSP_2374 hypothetical protein
YP_001042918.1	PFAM: protein of unknown function UPF0061; KEGG: rsp:RSP_2375 hypothetical protein
YP_001042919.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_001042920.1	converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism
YP_001042921.1	KEGG: rsp:RSP_2378 putative fatty acid beta hydroxylase (cytochrome P450)
YP_001042922.1	KEGG: rsp:RSP_2379 hypothetical protein
YP_001042923.1	PFAM: Catalase domain protein; KEGG: rsp:RSP_2380 catalase
YP_001042924.1	KEGG: rsp:RSP_6048 hypothetical protein
YP_001042925.1	responsible for recognizing base lesions in the genome and initiating base excision DNA repair
YP_001042927.1	KEGG: rsp:RSP_2382 hypothetical protein
YP_001042928.1	PFAM: protein of unknown function DUF1469; KEGG: rsp:RSP_2383 putative integral membrane protein
YP_001042929.1	KEGG: rsp:RSP_6050 hypothetical protein
YP_001042930.1	KEGG: rsp:RSP_2384 hypothetical protein
YP_001042931.1	KEGG: rsp:RSP_2385 hypothetical protein
YP_001042932.1	PFAM: phosphate-starvation-inducible E; KEGG: rsp:RSP_6224 hypothetical protein
YP_001042933.1	isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway
YP_001042934.1	PFAM: protein of unknown function DUF1178; KEGG: rsp:RSP_2387 hypothetical protein
YP_001042935.1	PFAM: NUDIX hydrolase; KEGG: rsp:RSP_2388 hypothetical protein
YP_001042936.1	PFAM: glutathione peroxidase; KEGG: rsp:RSP_2389 putative glutathione peroxidase
YP_001042937.1	PFAM: histone deacetylase superfamily; KEGG: rsp:RSP_2390 putative acetoin utilization protein
YP_001042938.1	TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: rsp:RSP_2391 2'-5' RNA ligase
YP_001042939.1	PFAM: NnrUfamily protein; KEGG: rsp:RSP_2392 putative membrane protein, similar to periplasmic nitrate reductase NnuR
YP_001042940.1	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: rsp:RSP_2394 putative 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)
YP_001042941.1	PFAM: Di-haem cytochrome c peroxidase; KEGG: rsp:RSP_2395 BccP, cytochrome c peroxidase
YP_001042942.1	KEGG: rsp:RSP_2396 hypothetical protein
YP_001042943.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_2397 ABC putrescine transporter, periplasmic substrate-binding subunit
YP_001042944.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2398 ABC putrescine transporter, inner membrane subunit
YP_001042945.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2399 ABC putrescine transporter, inner membrane subunit
YP_001042946.1	KEGG: rsp:RSP_2400 ABC putrescine transporter, ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase
YP_001042947.1	PFAM: Amidase; KEGG: rsp:RSP_2401 putative 6-aminohexanoate-cyclic-dimer hydrolase
YP_001042948.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rsp:RSP_2402 putative TonB dependent vitamin B12 outer membrane receptor
YP_001042949.1	PFAM: periplasmic binding protein; KEGG: rsp:RSP_2403 ABC cobalamin/Fe3+-siderophore transporter, periplasmic substrate-binding subunit
YP_001042950.1	PFAM: transport system permease protein; KEGG: rsp:RSP_2404 ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit
YP_001042951.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2405 ABC cobalamin/Fe3+-siderophore transporter, ATPase subunit
YP_001042952.1	PFAM: protein of unknown function DUF105; KEGG: rsp:RSP_2406 hypothetical protein
YP_001042953.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_2407 periplasmic sensor hybrid histidine kinase
YP_001042954.1	KEGG: rsp:RSP_2408 hypothetical protein
YP_001042955.1	KEGG: rsp:RSP_2409 putative pseudouridine synthase, Rlu; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase
YP_001042956.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters
YP_001042957.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rsp:RSP_2411 hypothetical protein
YP_001042958.1	TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; Oligopeptidase F; KEGG: rsp:RSP_2412 oligoendopeptidase F
YP_001042959.1	catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA
YP_001042960.1	KEGG: rsp:RSP_2414 putative mRNA 3-end processing factor
YP_001042961.1	PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rsp:RSP_2415 hypothetical protein
YP_001042962.1	PFAM: protein of unknown function DUF403; KEGG: rsp:RSP_2416 hypothetical protein
YP_001042963.1	PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rsp:RSP_2417 hypothetical protein
YP_001042964.1	PFAM: 20S proteasome, A and B subunits; KEGG: rsp:RSP_2420 putative proteasome-type protease
YP_001042965.1	PFAM: alpha/beta hydrolase fold; KEGG: rsp:RSP_2418 putative esterase/lipase/thioesterase
YP_001042966.1	PFAM: Sterol-binding domain protein; KEGG: rsp:RSP_2419 hypothetical protein
YP_001042967.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rsp:RSP_2421 hypothetical protein
YP_001042968.1	PFAM: helicase domain protein; KEGG: rsp:RSP_2422 putative ATP-dependent helicase, MgpS
YP_001042969.1	PFAM: RNA-binding S4 domain protein; KEGG: rsp:RSP_2423 putative heat shock protein 15 (HSP15)
YP_001042970.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rsp:RSP_2424 ferredoxin II
YP_001042971.1	PFAM: transcription factor CarD; KEGG: rsp:RSP_2425 putative CarD-like transcriptional regulator
YP_001042972.1	TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: rsp:RSP_2427 putative cobalamin (5'-phosphate) synthase
YP_001042973.1	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole
YP_001042974.1	PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: rsp:RSP_2429 glutathione-regulated potassium-efflux system protein, KefB
YP_001042975.1	KEGG: rsp:RSP_6052 hypothetical protein
YP_001042976.1	PFAM: protein of unknown function DUF541; KEGG: rsp:RSP_2430 hypothetical protein
YP_001042977.1	KEGG: rsp:RSP_2431 putative O-acetylhomoserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_001042978.1	KEGG: rsp:RSP_2432 hypothetical protein
YP_001042979.1	PFAM: response regulator receiver; KEGG: rsp:RSP_2433 chemotaxis response regulator, CheY2
YP_001042980.1	PFAM: MCP methyltransferase, CheR-type; KEGG: rsp:RSP_2434 putative MCP methyltransferase, CheR1
YP_001042981.1	PFAM: CheW domain protein; KEGG: rsp:RSP_2435 putative chemotaxis scaffold protein, CheW1
YP_001042982.1	PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rsp:RSP_2436 chemotaxis histidine protein kinase, CheA1
YP_001042983.1	PFAM: response regulator receiver; KEGG: rsp:RSP_2437 chemotaxis response regulator, CheY1
YP_001042984.1	KEGG: rsp:RSP_2438 putative CheX protein
YP_001042985.1	catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_001042986.1	PFAM: chemotaxis sensory transducer; KEGG: rsp:RSP_2440 methyl accepting chemotaxis protein
YP_001042987.1	KEGG: rsp:RSP_2441 putative transducer like protein
YP_001042988.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rsp:RSP_2442 methyl accepting chemotaxis protein, McpB
YP_001042989.1	PFAM: response regulator receiver; KEGG: rsp:RSP_2443 putative chemotaxis response regulator, CheY5
YP_001042990.1	KEGG: rsp:RSP_2444 hypothetical protein
YP_001042991.1	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: rsp:RSP_2445 putative alpha amylase
YP_001042992.1	KEGG: rsp:RSP_2446 putative trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain
YP_001042993.1	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_001042994.1	KEGG: rsp:RSP_2449 putative glycosyl hydrolase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain
YP_001042995.1	KEGG: rsp:RSP_2450 putative alpha-amylase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain
YP_001042996.1	KEGG: rsp:RSP_2451 putative 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77
YP_001042997.1	KEGG: rsp:RSP_2452 alpha amylase, catalytic domain/subdomain; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain
YP_001042998.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_2453 putative oxidoreductase (NAD/NADP dependent)
YP_001042999.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_001043000.1	PFAM: Colicin V production protein; KEGG: rsp:RSP_2455 putative colicin V production protein, DedE
YP_001043001.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_001043002.1	PFAM: Paraquat-inducible protein A; KEGG: rsp:RSP_2457 hypothetical protein
YP_001043003.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2458 ABC transporter, ATPase subunit
YP_001043004.1	PFAM: protein of unknown function DUF140; KEGG: rsp:RSP_2459 ABC transporter, inner membrane subunit
YP_001043005.1	KEGG: rsp:RSP_2460 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein
YP_001043006.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_2461 3-oxoacyl-(acyl-carrier protein) reductase
YP_001043007.1	carries the fatty acid chain in fatty acid biosynthesis
YP_001043008.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_001043009.1	PFAM: aminodeoxychorismate lyase; KEGG: rsp:RSP_2465 hypothetical protein
YP_001043010.1	KEGG: rsp:RSP_2466 hypothetical protein
YP_001043011.1	PFAM: protein of unknown function DUF264; KEGG: rsp:RSP_2467 putative large terminase
YP_001043012.1	TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: rsp:RSP_2468 putative portal protein
YP_001043013.1	KEGG: rsp:RSP_2469 hypothetical protein
YP_001043014.1	TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35, phage prohead HK97; KEGG: rsp:RSP_2470 putative prohead protease
YP_001043015.1	TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: rsp:RSP_2471 predicted phage phi-C31 GP36 major capsid-like protein
YP_001043016.1	KEGG: rsp:RSP_2472 hypothetical protein
YP_001043017.1	TIGRFAM: phage head-tail adaptor, putative; KEGG: rsp:RSP_6053 putative phage tail-head adaptor
YP_001043018.1	KEGG: rsp:RSP_6054 hypothetical protein
YP_001043019.1	TIGRFAM: phage major tail protein, TP901-1 family; KEGG: rsp:RSP_2473 hypothetical protein
YP_001043020.1	KEGG: rsp:RSP_2474 hypothetical protein
YP_001043021.1	KEGG: rsp:RSP_2474 hypothetical protein
YP_001043022.1	KEGG: rsp:RSP_2475 putative phage tail minor protein
YP_001043023.1	KEGG: rsp:RSP_2476 hypothetical protein
YP_001043024.1	KEGG: rsp:RSP_2477 hypothetical protein
YP_001043025.1	TIGRFAM: putative phage cell wall peptidase, NlpC/P60 family; KEGG: rsp:RSP_2478 hypothetical protein
YP_001043026.1	KEGG: rsp:RSP_2479 putative phage host specificity protein
YP_001043027.1	KEGG: rsp:RSP_2480 hypothetical protein
YP_001043028.1	KEGG: rsp:RSP_2481 serine acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein
YP_001043029.1	KEGG: rsp:RSP_4050 dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase complex; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein
YP_001043030.1	catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase
YP_001043031.1	PFAM: dehydrogenase, E1 component; KEGG: rsp:RSP_4047 pyruvate dehydrogenase E1 component, alpha subunit
YP_001043032.1	PFAM: Septum formation initiator; KEGG: rsp:RSP_4046 hypothetical protein
YP_001043033.1	catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate
YP_001043034.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_001043035.1	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rsp:RSP_4043 peptidylprolyl isomerase
YP_001043036.1	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rsp:RSP_4042 peptidyl-prolyl cis-trans isomerase, cyclophilin type
YP_001043037.1	KEGG: rsp:RSP_4041 tyrosyl-tRNA synthetase, class Ib; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib
YP_001043038.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_001043039.1	PFAM: protein of unknown function DUF985; KEGG: rsp:RSP_2490 hypothetical protein
YP_001043040.1	KEGG: rsp:RSP_6057 hypothetical protein
YP_001043041.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_001043042.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_2492 possible transporter, RhaT family, DMT superfamily
YP_001043043.1	PFAM: ferric-uptake regulator; KEGG: rsp:RSP_2494 ferric-uptake regulator
YP_001043044.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_001043045.1	PFAM: Quinolinate phosphoribosyl transferase; KEGG: rsp:RSP_2501 hypothetical protein
YP_001043046.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_001043047.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_001043048.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rsp:RSP_2504 phosphoglycolate phosphatase
YP_001043049.1	PFAM: CreA family protein; KEGG: rsp:RSP_2505 possible CreA protein
YP_001043050.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rsp:RSP_2506 isovaleryl-CoA dehydrogenase
YP_001043051.1	PFAM: OmpW family protein; KEGG: rsp:RSP_2507 outer membrane protein
YP_001043052.1	PFAM: carboxyl transferase; KEGG: rsp:RSP_2508 methylcrotonyl-CoA carboxylase beta chain
YP_001043053.1	PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rsp:RSP_2509 methylcrotonyl-CoA carboxylase alpha chain
YP_001043054.1	catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA
YP_001043055.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001043056.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001043057.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_001043058.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001043059.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001043060.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001043061.1	KEGG: rsp:RSP_2517 hypothetical protein
YP_001043062.1	part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase
YP_001043063.1	KEGG: rsp:RSP_2519 hypothetical protein
YP_001043064.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001043065.1	KEGG: rsp:RSP_2520 hypothetical protein
YP_001043066.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001043067.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001043068.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: rsp:RSP_2524 possible carboxymuconolactone decarboxylase family protein
YP_001043069.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001043070.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001043071.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_001043072.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001043073.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001043074.1	KEGG: rsp:RSP_2532 putative biotin protein ligase; TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase
YP_001043075.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_001043076.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: rsp:RSP_2534 predicted hydrolase of the metallo-beta-lactamase superfamily
YP_001043077.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rsp:RSP_2536 ATP-dependent helicase, DEAD-box
YP_001043078.1	TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: rsp:RSP_2537 probable peptide chain release factor RF3
YP_001043079.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_2538 short-chain dehydrogenase/reductase
YP_001043080.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_2539 ABC transporter, ATPase subunit
YP_001043081.1	TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: rsp:RSP_2540 twin-arginine translocation system protein, TatA
YP_001043082.1	TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: rsp:RSP_6059 twin-arginine translocation system protein, TatB
YP_001043083.1	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: rsp:RSP_2541 twin-arginine translocation system protein, TatC
YP_001043084.1	PFAM: protein of unknown function DUF815; SMART: AAA ATPase; KEGG: rsp:RSP_2542 ATPase
YP_001043085.1	PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: rsp:RSP_2543 peptidoglycan-binding LysM (possible peptidase)
YP_001043086.1	KEGG: rsp:RSP_2544 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_001043087.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_001043088.1	PFAM: sugar transferase; KEGG: rsp:RSP_2547 exopolysaccharide production protein ExoY
YP_001043089.1	PFAM: polysaccharide export protein; KEGG: rsp:RSP_2548 outer membrane polysaccharide export protein, ExoF
YP_001043090.1	PFAM: O-antigen polymerase; KEGG: rsp:RSP_2549 putative polysaccharide polymerase
YP_001043091.1	PFAM: glycoside hydrolase, family 16; KEGG: rsp:RSP_2550 endo-beta-1,3-1,4-glycanase protein
YP_001043092.1	PFAM: glycosyl transferase, family 2; KEGG: rsp:RSP_2551 glycosyl transferase, family 2
YP_001043093.1	PFAM: glycosyl transferase, family 2; KEGG: rsp:RSP_2552 glycosyl transferase, family 2
YP_001043094.1	KEGG: rsp:RSP_2553 hypothetical protein
YP_001043095.1	KEGG: rsp:RSP_2554 hypothetical protein
YP_001043096.1	KEGG: rsp:RSP_2555 hypothetical protein
YP_001043097.1	KEGG: rsp:RSP_2556 hypothetical protein
YP_001043098.1	PFAM: asparagine synthase; KEGG: rsp:RSP_2557 putative asparagine synthetase
YP_001043099.1	KEGG: rsp:RSP_2558 hypothetical protein
YP_001043100.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2559 ABC transporter, fused ATPase and inner membrane subunits
YP_001043101.1	KEGG: rsp:RSP_6060 hypothetical protein
YP_001043102.1	PFAM: lipopolysaccharide biosynthesis; KEGG: rsp:RSP_2561 putative succinoglycan biosynthesis transport protein ExoP
YP_001043103.1	PFAM: glycosyl transferase, family 2; KEGG: rsp:RSP_2562 succinoglycan biosynthesis protein ExoM
YP_001043104.1	PFAM: glycosyl transferase, family 2; KEGG: rsp:RSP_2563 glycosyl transferase, family 2
YP_001043105.1	KEGG: rsp:RSP_2564 glycosyltransferase, succinoglycan biosynthesis protein ExoL
YP_001043106.1	KEGG: rsp:RSP_2565 UDPG-pyrophosphorylase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase
YP_001043107.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rsp:RSP_2567 putative sulfolipid biosynthesis protein
YP_001043108.1	PFAM: glycosyl transferase, family 8; KEGG: rsp:RSP_2568 glycosyl transferase (sulfolipid biosynthesis) protein
YP_001043109.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: rsp:RSP_2569 sulfolipid (UDP-sulfoquinovose) biosynthesis protein
YP_001043110.1	TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: rsp:RSP_2570 protease I
YP_001043111.1	PFAM: luciferase family protein; KEGG: rsp:RSP_2571 putative oxidoreductase protein
YP_001043112.1	PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rsp:RSP_2572 CrpK, Fnr-type transcriptional regulator
YP_001043113.1	KEGG: rsp:RSP_2573 hypothetical protein
YP_001043114.1	KEGG: rsp:RSP_2574 hypothetical protein
YP_001043115.1	catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione
YP_001043116.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsp:RSP_2576 alcohol dehydrogenase class III
YP_001043117.1	PFAM: cytochrome c, class I; KEGG: rsp:RSP_2577 isocytochrome c2
YP_001043118.1	PFAM: Pyrrolo-quinoline quinone; KEGG: rsp:RSP_2578 putative pqq dehydrogenase protein
YP_001043119.1	KEGG: rsp:RSP_2579 cytochrome c553i
YP_001043120.1	SMART: extracellular solute-binding protein, family 3; KEGG: rsp:RSP_2580 putative methanol oxidation protein
YP_001043121.1	KEGG: rsp:RSP_2581 rhodanese
YP_001043122.1	KEGG: rsp:RSP_2582 hypothetical protein
YP_001043123.1	TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: rsp:RSP_2583 hypothetical protein
YP_001043124.1	KEGG: rsp:RSP_2584 hypothetical protein
YP_001043125.1	KEGG: rsp:RSP_2585 hypothetical protein
YP_001043126.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2586 ABC multidrug efflux transporter, ATPase subunit
YP_001043127.1	PFAM: ABC-2 type transporter; KEGG: rsp:RSP_2587 ABC multidrug efflux transporter, inner membrane subunit
YP_001043128.1	KEGG: rsp:RSP_2588 hypothetical protein
YP_001043129.1	PFAM: beta-lactamase domain protein; KEGG: rsp:RSP_2589 hypothetical protein
YP_001043130.1	KEGG: rsp:RSP_2590 hypothetical protein
YP_001043131.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rsp:RSP_2591 two component transcriptional regulator, LuxR family family
YP_001043132.1	PFAM: domain of unknown function DUF1745; KEGG: rsp:RSP_2592 hypothetical protein
YP_001043133.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_2593 hybrid histidine kinase
YP_001043134.1	KEGG: rsp:RSP_2594 hypothetical protein
YP_001043135.1	KEGG: rsp:RSP_2595 hypothetical protein
YP_001043136.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2596 ABC transporter, ATPase subunit
YP_001043137.1	KEGG: rsp:RSP_2597 ABC transporter, periplasmic substrate-binding protein
YP_001043138.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2598 ABC transporter, inner membrane subunit
YP_001043139.1	TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rsp:RSP_2599 phosphate regulon transcriptional regulator, PhoR
YP_001043140.1	TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: rsp:RSP_2600 phosphate transport system regulatory protein
YP_001043141.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_001043142.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2602 ABC phosphate transporter, inner membrane subunit PstA
YP_001043143.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2603 ABC phosphate transporter, inner membrane subunit PstC
YP_001043144.1	KEGG: rsp:RSP_2604 ABC phosphate transporter, periplasmic phosphate-binding protein
YP_001043145.1	PFAM: protein of unknown function DUF159; KEGG: rsp:RSP_2605 hypothetical protein
YP_001043146.1	PFAM: regulatory protein, ArsR; KEGG: rsp:RSP_2606 ArsR family arsenical resistance operon repressor
YP_001043147.1	PFAM: flavin reductase domain protein, FMN-binding; KEGG: rsp:RSP_2607 nitrilotriacetate monooxygenase component B
YP_001043148.1	PFAM: Mg2+ transporter protein, CorA family protein; KEGG: rsp:RSP_2608 magnesium/cobalt transport protein, MIT family
YP_001043149.1	Catalyzes the deamination of dCTP to form dUTP
YP_001043150.1	PFAM: regulatory protein, MerR; KEGG: rsp:RSP_2610 trancriptional regulator, MerR family
YP_001043151.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_001043152.1	KEGG: rsp:RSP_2612 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YP_001043153.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_001043154.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_001043155.1	KEGG: rsp:RSP_2615 hypothetical protein
YP_001043156.1	PFAM: SmpA/OmlA domain protein; KEGG: rsp:RSP_2616 hypothetical protein
YP_001043157.1	KEGG: rsp:RSP_2617 peptide methionine sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B
YP_001043158.1	KEGG: rsp:RSP_2618 putative hemolysin
YP_001043159.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_001043160.1	PFAM: protein of unknown function DUF1153; KEGG: rsp:RSP_2620 hypothetical protein
YP_001043161.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rsp:RSP_2621 two component transcriptional regulator, winged helix family
YP_001043162.1	KEGG: rsp:RSP_2622 DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: NAD-dependent DNA ligase-like
YP_001043163.1	catalyzes branch migration in Holliday junction intermediates
YP_001043164.1	KEGG: rsp:RSP_2624 hypothetical protein
YP_001043165.1	KEGG: rsp:RSP_2625 NifU-related protein involved in Fe-S cluster formation
YP_001043166.1	PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: rsp:RSP_2627 phosphoribosyl-AMP cyclohydrolase
YP_001043167.1	PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: rsp:RSP_2628 glutamyl-/glutaminyl-tRNA synthetase
YP_001043168.1	TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine
YP_001043169.1	negatively supercoils closed circular double-stranded DNA
YP_001043170.1	PFAM: Usg family protein; KEGG: rsp:RSP_2631 USG protein
YP_001043171.1	TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rsp:RSP_2632 arginase
YP_001043172.1	TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: rsp:RSP_2633 cytochrome c maturation protein, CcmF
YP_001043173.1	PFAM: cytochrome C biogenesis protein; KEGG: rsp:RSP_2634 cytochrome c maturation protein, CcmH
YP_001043174.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: jan:Jann_2154 enoyl-CoA hydratase/isomerase
YP_001043175.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_001043176.1	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rsp:RSP_2637 acetolactate synthase III large subunit
YP_001043177.1	TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: rsp:RSP_2638 putative sodium/calcium exchanger
YP_001043178.1	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate
YP_001043179.1	PFAM: RDD domain containing protein; KEGG: rsp:RSP_2640 hypothetical protein
YP_001043180.1	KEGG: rsp:RSP_2641 hypothetical protein
YP_001043181.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rsp:RSP_2642 hypothetical protein
YP_001043182.1	PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: rsp:RSP_2643 glutamate-ammonia-ligase adenylyltransferase
YP_001043183.1	KEGG: rsp:RSP_2644 hypothetical protein
YP_001043184.1	KEGG: rsp:RSP_2645 KDPG/KHG bifunctional aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase
YP_001043185.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_001043186.1	KEGG: rsp:RSP_2647 predicted SAM-dependent methyltransferase
YP_001043187.1	KEGG: rsp:RSP_2648 hypothetical protein
YP_001043188.1	PFAM: peptidase M48, Ste24p; KEGG: rsp:RSP_2649 putative Zn-dependent protease
YP_001043189.1	KEGG: rsp:RSP_2650 hypothetical protein
YP_001043191.1	KEGG: rsp:RSP_2651 hypothetical protein
YP_001043192.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_2652 putative acetyltransferase
YP_001043193.1	PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rsp:RSP_2653 ATPase, AAA family
YP_001043194.1	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: rsp:RSP_2654 DnaK suppressor protein, DksA family
YP_001043195.1	PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: rsp:RSP_2656 putative salicylate hydroxylase (salicylate 1-monooxygenase)
YP_001043196.1	TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rsp:RSP_2655 hypothetical protein
YP_001043197.1	TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rsp:RSP_2657 exodeoxyribonuclease III
YP_001043198.1	TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rsp:RSP_2658 HesB/YadR/YfhF family protein
YP_001043199.1	KEGG: rsp:RSP_2659 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region
YP_001043200.1	TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: rsp:RSP_2660 ribonuclease BN family protein
YP_001043201.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: rsp:RSP_2661 iron-containing alcohol dehydrogenase
YP_001043202.1	TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: rsp:RSP_2662 glycerol kinase
YP_001043203.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_2663 ABC sugar (glycerol) transporter, periplasmic binding protein
YP_001043204.1	KEGG: rsp:RSP_2664 hypothetical protein
YP_001043205.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2665 ABC sugar (glycerol) transporter, inner membrane subunit
YP_001043206.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2666 ABC sugar (glycerol) transporter, inner membrane subunit
YP_001043207.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2667 ABC sugar (glycerol) transporter, ATPase subunit
YP_001043208.1	PFAM: ABC transporter related; Transport-associated OB domain protein; KEGG: rsp:RSP_2669 ABC sugar (glycerol) transporter, ATPase subunit
YP_001043209.1	in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane
YP_001043210.1	KEGG: rsp:RSP_2671 hypothetical protein
YP_001043211.1	KEGG: rsp:RSP_2672 hypothetical protein
YP_001043212.1	PFAM: Pyrrolo-quinoline quinone; KEGG: rsp:RSP_2673 glucose dehydrogenase
YP_001043213.1	PFAM: PRC-barrel domain protein; KEGG: rsp:RSP_2674 hypothetical protein
YP_001043214.1	KEGG: rsp:RSP_2675 hypothetical protein
YP_001043215.1	PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: rsp:RSP_2676 hypothetical protein
YP_001043216.1	PFAM: response regulator receiver; KEGG: rsp:RSP_6064 response regulator receiver domain protein
YP_001043217.1	PFAM: MgtC/SapB transporter; KEGG: rsp:RSP_2677 putative Mg++ transport associated protein, MgtC
YP_001043218.1	KEGG: rsp:RSP_2678 hypothetical protein
YP_001043219.1	PFAM: DNA primase, small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: rsp:RSP_2679 ATP-dependent DNA ligase
YP_001043220.1	KEGG: rsp:RSP_6225 hypothetical protein
YP_001043221.1	PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rsp:RSP_2681 sigma factor, RpoE
YP_001043222.1	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: rsp:RSP_2682 acyl-carrier-protein S-malonyltransferase
YP_001043223.1	PFAM: protein of unknown function DUF1289; KEGG: rsp:RSP_2683 hypothetical protein
YP_001043224.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_001043225.1	KEGG: rsp:RSP_2685 putative cytochrome c-type biogenesis protein, CycH
YP_001043226.1	TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_2686 putative sarcosine oxidase beta subunit
YP_001043227.1	KEGG: rsp:RSP_2687 cytochrome b-c1 subunit IV
YP_001043228.1	PFAM: Sarcosine oxidase, delta subunit, heterotetrameric; KEGG: rsp:RSP_2688 putative sarcosine oxidase delta subunit protein
YP_001043229.1	TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: rsp:RSP_2689 putative sarcosine oxidase, alpha subunit
YP_001043230.1	PFAM: Sarcosine oxidase, gamma subunit; KEGG: rsp:RSP_2690 putative sarcosine oxidase gamma subunit
YP_001043231.1	PFAM: acyltransferase 3; KEGG: rsp:RSP_2692 acyltransferase domain (LPS)
YP_001043232.1	PFAM: manganese and iron superoxide dismutase; KEGG: rsp:RSP_2693 superoxide dismutase, Fe-Mn family
YP_001043233.1	PFAM: conserved hypothetical protein 730; KEGG: rsp:RSP_2694 hypothetical protein
YP_001043234.1	PFAM: Peptidoglycan-binding LysM; KEGG: rsp:RSP_2695 possible peptidoglycan binding protein
YP_001043235.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2696 ABC transporter, fused ATPase and inner membrane subunits
YP_001043236.1	KEGG: rsp:RSP_2697 hypothetical protein
YP_001043237.1	PFAM: Pyrrolo-quinoline quinone; KEGG: rsp:RSP_2698 putative quinoprotein
YP_001043238.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_001043239.1	KEGG: rsp:RSP_2700 ABC oligo/dipeptide transporter, fused ATPase subunits; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_001043240.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2701 ABC oligo/dipeptide transporter, inner membrane subunit
YP_001043241.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2702 ABC oligo/dipeptide transporter, inner membrane subunit
YP_001043242.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rsp:RSP_2703 ABC dipeptide transporter, periplasmic binding protein
YP_001043243.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_001043244.1	Catalyzes the phosphorylation of UMP to UDP
YP_001043245.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_001043246.1	KEGG: rsp:RSP_2707 undecaprenyl pyrophosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase
YP_001043247.1	PFAM: phosphatidate cytidylyltransferase; KEGG: rsp:RSP_2708 phosphatidate cytidylyltransferase
YP_001043248.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_001043249.1	KEGG: rsp:RSP_2710 putative membrane-associated zinc metalloprotease; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein
YP_001043251.1	PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rsp:RSP_2711 putative outer membrane protein
YP_001043252.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: rsp:RSP_6204 hypothetical protein
YP_001043253.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_001043254.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_001043255.1	PFAM: protein of unknown function DUF1009; KEGG: rsp:RSP_2715 hypothetical protein
YP_001043256.1	KEGG: rsp:RSP_2716 putative lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19
YP_001043257.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2717 putative UUP ATPase
YP_001043258.1	KEGG: rsp:RSP_2718 possible outer membrane protein
YP_001043259.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: rsp:RSP_2719 transcriptional regulator, AsnC/Lrp family
YP_001043260.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rsp:RSP_2720 putative LysE/RhtB family amino acid efflux pump
YP_001043261.1	PFAM: protein of unknown function DUF419; KEGG: rsp:RSP_2721 hypothetical protein
YP_001043262.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_001043263.1	TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: rsp:RSP_2723 2-isopropylmalate synthase
YP_001043264.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rsp:RSP_2724 probable methylase involved in ubiquinone/menaquinone biosynthesis
YP_001043265.1	KEGG: rsp:RSP_2725 probable phytoene/squalene synthetase
YP_001043266.1	PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_2726 multidrug/metabolite efflux pump, major facilitator superfamily (MFS)
YP_001043267.1	PFAM: HhH-GPD family protein; KEGG: rsp:RSP_2727 probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
YP_001043268.1	PFAM: phospholipase/Carboxylesterase; KEGG: rsp:RSP_2728 phospholipase/carboxylesterase
YP_001043269.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: rsp:RSP_2729 probable restriction endonuclease
YP_001043270.1	PFAM: regulatory protein, ArsR; KEGG: rsp:RSP_2730 transcriptional regulator, ArsR family
YP_001043272.1	PFAM: NADPH-dependent FMN reductase; KEGG: rsp:RSP_2731 arsenical resistance protein, ArsH
YP_001043273.1	PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_2732 major facilitator superfamily (MFS) transporter
YP_001043274.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_001043275.1	TIGRFAM: 6-phosphogluconolactonase; KEGG: rsp:RSP_2735 6-phosphogluconolactonase
YP_001043276.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_001043277.1	PFAM: Endoribonuclease L-PSP; KEGG: rsp:RSP_2737 putative ssRNA endoribonuclease L-PSP
YP_001043278.1	PFAM: Rhodanese domain protein; KEGG: rsp:RSP_2738 probable rhodanese-related sulfurtransferase
YP_001043279.1	PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: rsp:RSP_2739 hypothetical protein
YP_001043281.1	KEGG: rsp:RSP_2740 putative glucose/sorbosone dehydrogenase
YP_001043282.1	KEGG: rsp:RSP_2741 class I diheme cytochrome c4
YP_001043283.1	KEGG: rsp:RSP_6067 hypothetical protein
YP_001043284.1	KEGG: rsp:RSP_2742 hypothetical protein
YP_001043285.1	KEGG: rsp:RSP_2744 hypothetical protein
YP_001043286.1	KEGG: rsp:RSP_2745 hypothetical protein
YP_001043287.1	KEGG: rsp:RSP_2746 hypothetical protein
YP_001043288.1	KEGG: rsp:RSP_2747 possible glycosyltransferase
YP_001043289.1	PFAM: CopG domain protein DNA-binding domain protein; protein of unknown function UPF0150; KEGG: rsp:RSP_2748 possible transcriptional regulator, CopG family
YP_001043291.1	PFAM: ferredoxin; KEGG: rsp:RSP_2766 uncharacterized metal-binding protein
YP_001043292.1	catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein
YP_001043293.1	KEGG: rsp:RSP_2769 probable 5,10-methylenetetrahydrofolate reductase
YP_001043294.1	KEGG: rsp:RSP_2770 hypothetical protein
YP_001043295.1	PFAM: Ppx/GppA phosphatase; KEGG: rsp:RSP_2771 putative exopolyphosphatase
YP_001043296.1	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: rsp:RSP_2772 23S rRNA methylase
YP_001043297.1	PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: rsp:RSP_2773 hypothetical protein
YP_001043298.1	PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rsp:RSP_2774 hypothetical protein
YP_001043299.1	TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; KEGG: rsp:RSP_2775 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
YP_001043300.1	PFAM: phosphopantetheine-binding; KEGG: rsp:RSP_2776 acyl carrier protein, AcpP
YP_001043301.1	PFAM: beta-ketoacyl synthase; KEGG: rsp:RSP_2777 3-oxoacyl-(acyl-carrier-protein) synthase
YP_001043302.1	PFAM: Invasion associated locus B family protein; KEGG: rsp:RSP_2778 hypothetical protein
YP_001043303.1	PFAM: Catalase domain protein; KEGG: rsp:RSP_2779 catalase
YP_001043304.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_2780 transcriptional regulator, OxyR, LysR family
YP_001043305.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rsp:RSP_2781 peroxiredoxin/glutaredoxin family protein
YP_001043306.1	TIGRFAM: MIP family channel proteins; PFAM: major intrinsic protein; KEGG: rsp:RSP_2782 aquaporin z, major intrinsic protein (MIP) family
YP_001043307.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_001043308.1	KEGG: rsp:RSP_2784 diheme class I cytochrome c
YP_001043309.1	PFAM: cytochrome c, class II; KEGG: rsp:RSP_2785 cytochrome c-554
YP_001043310.1	KEGG: rsp:RSP_2786 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_001043311.1	PFAM: cyclase/dehydrase; KEGG: rsp:RSP_2787 hypothetical protein
YP_001043312.1	PFAM: ribulose-phosphate 3-epimerase; KEGG: rsp:RSP_2864 pentose-5-phosphate-3-epimerase
YP_001043313.1	PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_2862 glycine/D-amino acid oxidase (deaminating)
YP_001043314.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_001043315.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_001043316.1	PFAM: PfkB domain protein; KEGG: rsp:RSP_6216 putative carbohydrate kinase, PfkB family
YP_001043317.1	PFAM: Indigoidine synthase A family protein; KEGG: rsp:RSP_2858 IndA involved in pigment biosynthesis
YP_001043318.1	TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_2857 D-beta-hydroxybutyrate dehydrogenase
YP_001043319.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rsp:RSP_2856 putative oligopeptide ABC transporter, periplasmic-binding protein
YP_001043320.1	PFAM: acriflavin resistance protein; KEGG: rsp:RSP_2855 cation/multidrug efflux pump, RND superfamily
YP_001043321.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rsp:RSP_2854 cation/multidrug efflux pump, membrane fusion protein (MFP) family
YP_001043322.1	PFAM: regulatory protein, TetR; KEGG: rsp:RSP_2853 transcriptional regulator, TetR family
YP_001043323.1	PFAM: DSBA oxidoreductase; KEGG: rsp:RSP_2852 predicted polyketide biosynthesis associated protein
YP_001043324.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_2851 multidrug (bicyclomycin) efflux pump, major facilitator superfamily (MFS)
YP_001043325.1	KEGG: rsp:RSP_2850 transcription-repair coupling factor (helicase); TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_001043326.1	KEGG: rsp:RSP_2849 hypothetical membrane protein
YP_001043327.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_001043328.1	KEGG: rsp:RSP_2847 hypothetical protein
YP_001043329.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rsp:RSP_2846 putative 3-hydroxyisobutyrate dehydrogenase
YP_001043330.1	PFAM: peptidase S45, penicillin amidase; KEGG: rsp:RSP_2845 putative penicillin acylase (penicillin amidase)
YP_001043332.1	TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: rsp:RSP_2844 putative GTP-binding protein
YP_001043333.1	Stimulates the elongation of poly(A) tails
YP_001043334.1	PFAM: cation transporter; KEGG: rsp:RSP_2842 potassium uptake transporter, transmembrane subunit, TrkH
YP_001043335.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_001043336.1	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: rsp:RSP_2840 nitrogen assimilation transcriptional regulator, NtrX
YP_001043337.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: rsp:RSP_2839 nitrogen regulation protein, NtrY, signal transduction histidine kinase
YP_001043338.1	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: rsp:RSP_2838 nitrogen metabolism transcriptional regulator, NtrC
YP_001043339.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: rsp:RSP_2837 nitrogen regulation protein, NtrB signal transduction histidine kinase
YP_001043340.1	TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: rsp:RSP_2836 tRNA-dihydrouridine synthase, nifR3
YP_001043341.1	TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: rsp:RSP_2835 probable 4-diphosphocytidyl-2C-methyl-D-erythritol synthase (YgbP)
YP_001043342.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_001043343.1	PFAM: phosphatidylglycerophosphatase A; KEGG: rsp:RSP_2834 putative phosphatidylglycerophosphatase A
YP_001043344.1	PFAM: CinA domain protein; KEGG: rsp:RSP_2833 putative competence-damaged inducible protein
YP_001043345.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsp:RSP_2832 predicted conserved flavoprotein
YP_001043346.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_001043347.1	PFAM: NnrS family protein; KEGG: rsp:RSP_2830 hypothetical protein
YP_001043348.1	PFAM: protein of unknown function DUF1636; KEGG: rsp:RSP_2829 hypothetical protein
YP_001043349.1	TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rsp:RSP_2828 cobalamin synthesis protein CobW
YP_001043350.1	with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism
YP_001043351.1	catalyzes the interconversion of precorrin-8X and hydrogenobyrinate
YP_001043352.1	TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rsp:RSP_2826 putative precorrin-2 C20-methyltransferase
YP_001043353.1	TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rsp:RSP_2824 putative precorrin-3B C17-methyltransferase
YP_001043354.1	CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6
YP_001043355.1	KEGG: rsp:RSP_2823 putative precorrin-6y C5,15-methyltransferase; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
YP_001043356.1	KEGG: rsp:RSP_2822 putative precorrin methylase
YP_001043357.1	TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rsp:RSP_2821 putative precorrin-4 C11-methyltransferase
YP_001043358.1	catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1
YP_001043359.1	catalyzes the formation of precorrin 6x from precorrin 5
YP_001043360.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_001043361.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_001043362.1	KEGG: rsp:RSP_2816 hypothetical protein
YP_001043363.1	PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: rsp:RSP_2815 probable integrase/recombinase XerD
YP_001043364.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rsp:RSP_2814 hypothetical protein with CBS domain
YP_001043365.1	KEGG: rsp:RSP_6073 hypothetical protein
YP_001043366.1	KEGG: rsp:RSP_6226 hypothetical protein
YP_001043367.1	PFAM: trimethylamine methyltransferase; KEGG: rsp:RSP_2813 putative trimethylamine methyltransferase protein
YP_001043368.1	KEGG: rsp:RSP_2812 hypothetical protein
YP_001043369.1	PFAM: Mammalian cell entry related domain protein; KEGG: rsp:RSP_2811 putative ABC transporter, periplasmic substrate-binding protein
YP_001043370.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2810 ABC transporter, ATPase subunit
YP_001043371.1	PFAM: protein of unknown function DUF140; KEGG: rsp:RSP_2809 ABC transporter, inner membrane subunit
YP_001043372.1	KEGG: rsp:RSP_2808 hypothetical protein
YP_001043373.1	PFAM: cytochrome B561; KEGG: rsp:RSP_2807 putative cytochrome b
YP_001043374.1	PFAM: phage integrase family protein; KEGG: sit:TM1040_0776 phage integrase
YP_001043375.1	KEGG: rsp:RSP_2806 probable ATP-dependent protease La protein; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_001043376.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rsp:RSP_2805 putative NADH-flavin oxidoreductase
YP_001043377.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_001043378.1	PFAM: acriflavin resistance protein; KEGG: rsp:RSP_2803 multidrug/cation efflux pump, RND superfamily
YP_001043379.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rsp:RSP_2802 multidrug/cation efflux pump, membrane fusion protein subunit
YP_001043380.1	PFAM: regulatory protein, TetR; KEGG: rsp:RSP_2801 transcriptional regulator, TetR family
YP_001043381.1	KEGG: rsp:RSP_6075 hypothetical protein
YP_001043382.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rsp:RSP_2800 putative AcoR, transcriptional activator of acetoin/glycerol metabolism
YP_001043383.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsp:RSP_2799 putative zinc-containing alcohol dehydrogenase
YP_001043384.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth
YP_001043385.1	PFAM: protein of unknown function DUF59; KEGG: rsp:RSP_2797 hypothetical protein of unknown function
YP_001043386.1	PFAM: amidohydrolase 2; KEGG: rsp:RSP_2796 hypothetical protein
YP_001043387.1	PFAM: monooxygenase component MmoB/DmpM; KEGG: rsp:RSP_2795 putative regulatory protein of multicomponent monooxygenase
YP_001043388.1	PFAM: methane/phenol/toluene hydroxylase; KEGG: rsp:RSP_2794 putative monooxygenase beta subunit
YP_001043389.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rsp:RSP_2793 putative reductase component of monooxygenase
YP_001043390.1	PFAM: methane/phenol/toluene hydroxylase; KEGG: rsp:RSP_2792 putative monooxygenase alpha subunit
YP_001043391.1	KEGG: rsp:RSP_2791 hypothetical protein
YP_001043392.1	KEGG: rsp:RSP_2790 hypothetical protein
YP_001043393.1	KEGG: rsp:RSP_2789 hypothetical protein
YP_001043394.1	KEGG: rsp:RSP_6076 hypothetical protein
YP_001043395.1	TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: rsp:RSP_2867 sigma-54 factor family protein
YP_001043396.1	KEGG: rsp:RSP_2868 putative inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase
YP_001043397.1	KEGG: rsp:RSP_2869 possible tellurite resistance protein
YP_001043398.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_2870 ABC alpha-glucoside transporter, ATPase subunit AglK
YP_001043399.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2871 ABC alpha-glucoside transporter, inner membrane subunit AglG
YP_001043400.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2872 ABC alpha-glucoside transporter, inner membrane subunit AglF
YP_001043401.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_2873 ABC alpha-glucoside transporter, perplasmic substrate-binding protein
YP_001043402.1	PFAM: glycoside hydrolase, family 1; KEGG: rsp:RSP_2874 putative beta-glucosidase A
YP_001043403.1	PFAM: Glucokinase; KEGG: rsp:RSP_2875 putative glucokinase
YP_001043404.1	PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: rsp:RSP_2876 putative carbon monoxide dehydrogenase medium chain
YP_001043405.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rsp:RSP_2877 putative carbon monoxide dehydrogenase large chain
YP_001043406.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rsp:RSP_2878 putative carbon-monoxide dehydrogenase small chain
YP_001043407.1	PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rsp:RSP_2879 hypothetical protein
YP_001043408.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: rsp:RSP_2880 signal transduction histidine kinase
YP_001043409.1	PFAM: domain of unknown function DUF1745; KEGG: rsp:RSP_2881 hypothetical protein
YP_001043410.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rsp:RSP_2882 two component transcriptional regulator, LuxR family
YP_001043411.1	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate
YP_001043412.1	KEGG: rsp:RSP_2884 glycogen debranching enzyme; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain
YP_001043413.1	catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose
YP_001043414.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_001043415.1	KEGG: rsp:RSP_2887 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35
YP_001043416.1	TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rsp:RSP_2888 transcriptional regulator
YP_001043417.1	TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: rsp:RSP_2889 transcriptional regulator
YP_001043418.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rsp:RSP_2890 copper-translocating P-type ATPase
YP_001043419.1	PFAM: Heavy metal transport/detoxification protein; KEGG: rsp:RSP_2891 putative copper chaperone
YP_001043420.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_001043421.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2895 putative ABC transporter, fused ATPase subunits
YP_001043422.1	PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: rsp:RSP_2896 multiple antibiotic transporter
YP_001043423.1	KEGG: rsp:RSP_2897 hypothetical protein
YP_001043424.1	binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB
YP_001043425.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_001043426.1	PFAM: permease YjgP/YjgQ family protein; KEGG: rsp:RSP_2900 predicted permease
YP_001043427.1	PFAM: permease YjgP/YjgQ family protein; KEGG: rsp:RSP_2901 putative permease
YP_001043428.1	PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: rsp:RSP_2902 putative organic solvent tolerance protein
YP_001043429.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rsp:RSP_2903 probable PpiC-type peptidyl-prolyl cis-trans isomerase
YP_001043430.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_001043431.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_001043432.1	KEGG: rsp:RSP_6078 hypothetical protein
YP_001043433.1	TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 12; KEGG: rsp:RSP_2906 putative methylase
YP_001043434.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_001043435.1	KEGG: rsp:RSP_2908 hypothetical protein
YP_001043436.1	catalyzes the formation of putrescine from agmatine
YP_001043437.1	KEGG: rsp:RSP_2910 predicted metal-dependent amidase/aminoacylase/carboxypeptidase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_001043438.1	functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era
YP_001043439.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_2913 ABC Fe+3 siderophore transporter, periplasmic substrate-binding protein
YP_001043440.1	PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: rsp:RSP_2914 nucleoside hydrolase
YP_001043441.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: rsp:RSP_2915 probable two-component sensor histidine kinase
YP_001043442.1	KEGG: rsp:RSP_2916 hypothetical protein
YP_001043443.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: rsp:RSP_2917 putative cystathionine gamma-synthase beta-lyase
YP_001043444.1	KEGG: rsp:RSP_2918 predicted ferripyochelin binding protein
YP_001043445.1	Essential for recycling GMP and indirectly, cGMP
YP_001043446.1	PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: rsp:RSP_2920 hypothetical protein
YP_001043447.1	PFAM: protein of unknown function DUF1457; KEGG: rsp:RSP_6079 hypothetical protein
YP_001043448.1	KEGG: rsp:RSP_2921 phospho-2-dehydro-3-deoxyheptonate; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II
YP_001043449.1	PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: rsp:RSP_2922 transcriptional regulator, AraC family
YP_001043450.1	PFAM: Extracellular ligand-binding receptor; KEGG: rsp:RSP_2923 ABC branched amino acid transporter family, periplasmic substrate-binding protein
YP_001043451.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2924 ABC branched-chain amino acid transporter family, ATPase subunit
YP_001043452.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2925 ABC branched-chain amino acid transporter family, ATPase subunit
YP_001043453.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_2926 ABC branched-chain amino acid transporter family, inner membrane subunit
YP_001043454.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_2927 ABC branched-chain amino acid transporter family, inner membrane subunit
YP_001043455.1	KEGG: rsp:RSP_2928 hypothetical protein
YP_001043456.1	KEGG: rsp:RSP_2930 hypothetical protein
YP_001043457.1	PFAM: Disulphide bond formation protein DsbB; KEGG: rsp:RSP_2929 putative disulfide bond formation protein DsbB
YP_001043458.1	PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: rsp:RSP_2932 histidine utilization repressor, GntR family
YP_001043459.1	catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate
YP_001043460.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_001043461.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_001043462.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_001043463.1	PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: rba:RB7610 similar to DNA-dependent DNA polymerase beta chain YshC
YP_001043464.1	PFAM: protein of unknown function DUF1045; KEGG: rsp:RSP_2937 hypothetical protein
YP_001043465.1	KEGG: rsp:RSP_6080 hypothetical protein
YP_001043466.1	TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: rsp:RSP_2939 predicted transcriptional regulator containing the HTH domain
YP_001043467.1	PFAM: chromosome segregation and condensation protein ScpA; KEGG: rsp:RSP_2940 hypothetical protein
YP_001043468.1	PFAM: glycoside hydrolase, family 3 domain protein; KEGG: rsp:RSP_2941 putative glycoside hydrolase
YP_001043469.1	PFAM: Sporulation domain protein; KEGG: rsp:RSP_2942 hypothetical protein
YP_001043470.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_001043471.1	KEGG: rsp:RSP_6081 hypothetical protein
YP_001043472.1	PFAM: protein of unknown function DUF847; KEGG: rsp:RSP_2944 hypothetical protein
YP_001043473.1	CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane
YP_001043474.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_001043475.1	KEGG: rsp:RSP_2947 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase
YP_001043476.1	Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
YP_001043477.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_2950 transcriptional regulator, LysR family
YP_001043478.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_001043479.1	PFAM: BolA family protein; KEGG: rsp:RSP_2952 BolA-like protein
YP_001043480.1	TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: rsp:RSP_2953 glutaredoxin-related protein
YP_001043481.1	PFAM: protein of unknown function DUF710; KEGG: rsp:RSP_2954 hypothetical protein
YP_001043482.1	KEGG: rsp:RSP_2955 hypothetical protein
YP_001043483.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_001043484.1	KEGG: rsp:RSP_2957 hypothetical protein
YP_001043485.1	PFAM: protein of unknown function DUF808; KEGG: rsp:RSP_2958 hypothetical protein
YP_001043486.1	KEGG: rsp:RSP_2959 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase
YP_001043487.1	KEGG: rsp:RSP_6082 hypothetical protein
YP_001043488.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_001043489.1	PFAM: CBS domain containing protein; KEGG: rsp:RSP_2961 protein containing a CBS domain
YP_001043490.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_2965 transcriptional regulator, LysR family
YP_001043491.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: rsp:RSP_2962 methylmalonic acid semialdehyde dehydrogenase
YP_001043492.1	PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: rsp:RSP_2963 transcriptional regulator, Crp-Fnr family
YP_001043493.1	KEGG: rsp:RSP_2964 hypothetical protein
YP_001043494.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_001043495.1	PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_2967 probable transporter, major facilitator superfamily (MFS)
YP_001043496.1	E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_001043497.1	PFAM: protein of unknown function DUF924; KEGG: rsp:RSP_2969 hypothetical protein
YP_001043498.1	PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_2970 transporter, major facilitator superfamily (MFS)
YP_001043499.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_001043500.1	KEGG: rsp:RSP_2972 hypothetical protein
YP_001043501.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rsp:RSP_2973 peroxiredoxin
YP_001043502.1	PFAM: peptidase M23B; KEGG: rsp:RSP_2974 putative metalopeptidase
YP_001043503.1	PFAM: protein of unknown function DUF583; KEGG: rsp:RSP_2975 hypothetical protein
YP_001043504.1	KEGG: rsp:RSP_2976 hypothetical protein
YP_001043505.1	recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1
YP_001043506.1	KEGG: rsp:RSP_2978 penicillin-binding protein 1A (PBP-1a); TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase
YP_001043507.1	PFAM: cell wall hydrolase/autolysin; KEGG: rsp:RSP_2979 probable N-acetylmuramoyl-L-alanine amidase
YP_001043508.1	PFAM: aminotransferase, class I and II; KEGG: rsp:RSP_2980 putative aspartate aminotransferase A
YP_001043509.1	PFAM: DSBA oxidoreductase; KEGG: rsp:RSP_2981 putative protein-disulfide isomerase
YP_001043510.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_001043511.1	KEGG: rsp:RSP_2983 hypothetical protein
YP_001043512.1	catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine
YP_001043513.1	KEGG: rsp:RSP_2985 hypothetical protein
YP_001043514.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rsp:RSP_2986 hypothetical protein
YP_001043515.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_2987 probable acetyltransferase
YP_001043516.1	PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: rsp:RSP_2988 pirin-related protein
YP_001043517.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_001043518.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_0006 possible transporter, DMT superfamily
YP_001043519.1	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: rsp:RSP_0007 putative outer membrane protein
YP_001043520.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_0008 possible transporter, DME family, DMT superfamily
YP_001043521.1	KEGG: rsp:RSP_0009 hypothetical protein
YP_001043522.1	catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis
YP_001043523.1	PFAM: alpha/beta hydrolase fold; KEGG: rsp:RSP_0011 predicted hydrolase or acyltransferase (alpha/beta hydrolase)
YP_001043524.1	PFAM: protein of unknown function DUF344; KEGG: rsp:RSP_0013 hypothetical protein
YP_001043525.1	PFAM: regulatory protein, TetR; KEGG: rsp:RSP_0014 transcriptional regulator, TetR family
YP_001043526.1	KEGG: rsp:RSP_0015 ABC spermidine/putrescine transporter, ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase
YP_001043527.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0016 ABC spermidine/putrescine transporter, inner membrane subunit
YP_001043528.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0017 ABC spermidine/putrescine transporter, inner membrane subunit
YP_001043529.1	PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rsp:RSP_0018 putative transcriptional regulator, GntR family
YP_001043530.1	KEGG: rsp:RSP_0019 hypothetical protein
YP_001043531.1	PFAM: protein of unknown function DUF1003; KEGG: rsp:RSP_0020 hypothetical protein
YP_001043532.1	forms a direct contact with the tRNA during translation
YP_001043533.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_001043534.1	KEGG: rsp:RSP_6083 hypothetical protein
YP_001043535.1	KEGG: rsp:RSP_0024 putative dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-L-rhamnose synthetase); TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related
YP_001043536.1	PFAM: oxidoreductase domain protein; SAF domain; KEGG: rsp:RSP_0025 probable NAD(P)-dependent oxidoreductase
YP_001043537.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: rsp:RSP_0026 probable epimerase/dehydratase
YP_001043538.1	KEGG: rsp:RSP_0027 hypothetical protein
YP_001043539.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_0028 short chain dehydrogenase
YP_001043540.1	PFAM: acetyl-CoA hydrolase/transferase; KEGG: rsp:RSP_0029 acetyl-CoA hydrolase/transferase family protein
YP_001043541.1	KEGG: rsp:RSP_0030 PAS sensor diguanylatecyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_001043542.1	KEGG: rsp:RSP_6084 hypothetical protein
YP_001043543.1	KEGG: rsp:RSP_6085 hypothetical protein
YP_001043544.1	TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rsp:RSP_0032 sigma factor FliA (sigma-28 group, flagellar)
YP_001043545.1	KEGG: rsp:RSP_0033 hypothetical protein
YP_001043546.1	TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: rsp:RSP_0034 flagellar biosynthesis protein, FlhA
YP_001043547.1	PFAM: protein of unknown function DUF400; KEGG: rsp:RSP_0035 hypothetical protein
YP_001043548.1	KEGG: rsp:RSP_6086 hypothetical protein
YP_001043549.1	PFAM: SAF domain; KEGG: rsp:RSP_0036 flagellar basal-body P-ring formation protein FlgA
YP_001043550.1	KEGG: rsp:RSP_0037 putative FlgM, negative regulator of flagellin synthesis
YP_001043551.1	KEGG: rsp:RSP_6087 hypothetical protein
YP_001043552.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: rsp:RSP_6088 hypothetical protein (Sel1-like repeat)
YP_001043553.1	KEGG: rsp:RSP_6089 hypothetical protein
YP_001043554.1	KEGG: rsp:RSP_6090 hypothetical protein
YP_001043555.1	KEGG: rsp:RSP_0038 hypothetical protein
YP_001043556.1	KEGG: rsp:RSP_0039 hypothetical protein
YP_001043557.1	KEGG: rsp:RSP_0040 putative flagellar protein FliS
YP_001043558.1	KEGG: rsp:RSP_0041 hypothetical protein
YP_001043559.1	PFAM: CheW domain protein; Hpt domain protein; KEGG: rsp:RSP_0042 chemotaxis histidine protein kinase, CheA3
YP_001043560.1	PFAM: response regulator receiver; KEGG: rsp:RSP_0043 chemotaxis response regulator, CheY6
YP_001043561.1	PFAM: chemotaxis sensory transducer; SMART: histidine kinase, HAMP region domain protein; KEGG: rsp:RSP_0044 putative cytoplasmic chemoreceptor, TlpT
YP_001043562.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rsp:RSP_0045 Slp
YP_001043563.1	PFAM: CheW domain protein; KEGG: rsp:RSP_0046 chemotaxis protein, CheW4
YP_001043564.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: rsp:RSP_0047 chemotaxis methylesterase, CheB2
YP_001043565.1	PFAM: MCP methyltransferase, CheR-type; KEGG: rsp:RSP_0048 MCP methyltransferase, CheR3
YP_001043566.1	PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; KEGG: rsp:RSP_0049 chemotaxis histidine protein kinase, CheA4
YP_001043567.1	KEGG: rsp:RSP_6091 hypothetical protein
YP_001043568.1	PFAM: sigma-54 factor, interaction domain-containing protein; SMART: AAA ATPase; KEGG: rsp:RSP_0051 TorF protein
YP_001043569.1	TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: rsp:RSP_0052 flagellar protein FliE
YP_001043570.1	TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: rsp:RSP_0053 flagellar FliF M-ring protein
YP_001043571.1	PFAM: flagellar motor switch protein FliG; KEGG: rsp:RSP_0054 probable flagellar motor switch protein FliG
YP_001043572.1	KEGG: rsp:RSP_0055 flagellar protein FliH
YP_001043573.1	KEGG: rsp:RSP_0056 FliI, flagellum-specific ATPase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase
YP_001043574.1	KEGG: rsp:RSP_0057 flagellar protein FliJ
YP_001043575.1	PFAM: flagellar hook-length control protein; KEGG: rsp:RSP_0058 FliK, flagellar hook-length control protein
YP_001043576.1	PFAM: flagellar basal body-associated protein FliL; KEGG: rsp:RSP_0059 flagellar biosynthesis protein, FliL
YP_001043577.1	PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: rsp:RSP_0060 flagellar switch protein FliM
YP_001043578.1	TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rsp:RSP_0061 flagellar motor switch FliN protein
YP_001043579.1	KEGG: rsp:RSP_0062 flagellar protein FliO
YP_001043580.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_001043581.1	TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: rsp:RSP_0064 flagellar protein FliQ
YP_001043582.1	TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: rsp:RSP_0065 flagellar protein FliR
YP_001043583.1	TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: rsp:RSP_0066 flagellar protein FlhB
YP_001043584.1	KEGG: rsp:RSP_0067 hypothetical protein
YP_001043585.1	KEGG: rsp:RSP_6092 hypothetical protein
YP_001043586.1	TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: rsp:RSP_0068 sigma-54 factor (RpoN2)
YP_001043587.1	PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: rsp:RSP_0069 flagellar filament protein
YP_001043588.1	PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: rsp:RSP_0070 possible flagellar hook-associated protein 2 (filament cap protein)
YP_001043589.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: rsp:RSP_0071 sigma54 specific transcriptional regulator, fis family
YP_001043590.1	PFAM: Lytic transglycosylase, catalytic; KEGG: rsp:RSP_0072 possible invasion protein
YP_001043591.1	TIGRFAM: flagellar hook-associated protein 3; KEGG: rsp:RSP_0073 flagellar hook-associated protein 3 FlgL
YP_001043592.1	TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; flagellin hook IN repeat protein; protein of unknown function DUF1078 domain protein; KEGG: rsp:RSP_0074 FlgK flagellar hook-associated protein 1
YP_001043593.1	KEGG: rsp:RSP_6093 flagellar protein FlgJ
YP_001043594.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_001043595.1	PFAM: flagellar L-ring protein; KEGG: rsp:RSP_0077 flagellar L-ring protein
YP_001043596.1	TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rsp:RSP_0078 flagellar distal rod protein
YP_001043597.1	PFAM: protein of unknown function DUF1078 domain protein; KEGG: rsp:RSP_0079 flagellar proximal rod protein FlgF
YP_001043598.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: rsp:RSP_0080 flagellar hook protein FlgE
YP_001043599.1	PFAM: flagellar hook capping protein; KEGG: rsp:RSP_0081 flagellar scaffolding protein FlgD
YP_001043600.1	TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; KEGG: rsp:RSP_0082 flagellar basal-body rod protein FlgC
YP_001043601.1	TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: rsp:RSP_0083 flagellar proximal rod protein FlgB
YP_001043602.1	KEGG: rsp:RSP_0084 hypothetical protein
YP_001043603.1	KEGG: rsp:RSP_0085 multisensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_001043604.1	KEGG: rsp:RSP_0086 hypothetical protein
YP_001043605.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rsp:RSP_0087 two component transcriptional regulator, LuxR
YP_001043606.1	PFAM: protein of unknown function DUF892; KEGG: rsp:RSP_0088 YcfI, putative structural proteins
YP_001043607.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rsp:RSP_0089 hypothetical protein
YP_001043608.1	PFAM: putative sugar-binding domain protein; KEGG: rsp:RSP_0090 operon regulator SmoC
YP_001043609.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_0091 ABC sorbitol/mannitol transporter, periplasmic binding protein
YP_001043610.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0092 ABC sorbitol/mannitol transporter, inner membrane subunit
YP_001043611.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0093 ABC sorbitol/mannitol transporter, inner membrane subunit
YP_001043612.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_0094 ABC sorbitol/mannitol transporter, ATPase subunit
YP_001043613.1	Converts D-sorbitol to L-sorbose
YP_001043614.1	PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: rsp:RSP_0096 mannitol dehydrogenase
YP_001043615.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_0097 TRAP-T family sorbitol/mannitol transporter, periplasmic binding protein, SmoM
YP_001043616.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_6094 TRAP-T family sorbitol/mannitol transporter, DctM (12TMs) subunit
YP_001043617.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rsp:RSP_0099 TRAP-T family sorbitol/mannitol transporter, DctQ (4TMs) subunit
YP_001043618.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: rsp:RSP_0100 putative NADH dehydrogenase I chain A
YP_001043619.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_001043620.1	NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms
YP_001043621.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001043622.1	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rsp:RSP_0104 respiratory-chain NADH dehydrogenase, 51 kDa subunit
YP_001043623.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001043624.1	PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: rsp:RSP_0106 putative NADH dehydrogenase I chain H
YP_001043625.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001043626.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: rsp:RSP_0108 NADH dehydrogenase I chain J
YP_001043627.1	PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: rsp:RSP_0109 putative NADH dehydrogenase I chain K
YP_001043628.1	KEGG: rsp:RSP_0110 NADH-ubiquinone oxidoreductase, chain 5; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_001043629.1	KEGG: rpb:RPB_1358 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_001043630.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rsp:RSP_0112 NADH-ubiquinone oxidoreductase, chain 4
YP_001043631.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: rsp:RSP_0113 phospholipase D/transphosphatidylase
YP_001043632.1	KEGG: rsp:RSP_0114 hypothetical protein
YP_001043633.1	PFAM: cytochrome c, class I; KEGG: rsp:RSP_0115 class I triheme cytochrome c
YP_001043634.1	KEGG: rsp:RSP_0116 hypothetical protein
YP_001043635.1	PFAM: cytochrome c oxidase, subunit I; KEGG: rsp:RSP_0117 cytochrome c oxidase, subunit I
YP_001043636.1	TIGRFAM: cytochrome c, monohaem; PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; KEGG: rsp:RSP_0118 cytochrome c oxidase, subunit IIc
YP_001043637.1	PFAM: phosphoesterase, PA-phosphatase related; KEGG: rsp:RSP_0119 PA-phosphatase related phosphoesterase
YP_001043638.1	PFAM: Autoinducer-binding domain protein; KEGG: rsp:RSP_6095 possible transcriptional activator
YP_001043639.1	PFAM: regulatory protein, LuxR; Autoinducer-binding domain protein; KEGG: rsp:RSP_6096 transcriptional regulator, LuxR family
YP_001043640.1	PFAM: regulatory protein, LuxR; Autoinducer-binding domain protein; Bacterio-opsin activator, HTH domain protein; KEGG: rsp:RSP_0122 transcriptional regulator, LuxR family
YP_001043641.1	KEGG: rsp:RSP_6213 community escape response protein
YP_001043642.1	PFAM: autoinducer synthesis protein; KEGG: rsp:RSP_0123 autoinducer synthesis protein
YP_001043643.1	KEGG: rsp:RSP_0124 hypothetical protein
YP_001043644.1	involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan
YP_001043645.1	KEGG: rsp:RSP_0126 hypothetical protein
YP_001043646.1	necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space
YP_001043647.1	KEGG: rsp:RSP_0128 OpgC protein
YP_001043648.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0129 ABC D-methionine uptake transporter, ATPase subunit
YP_001043649.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0130 ABC D-methionine uptake transporter, inner membrane subunit
YP_001043650.1	TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: rsp:RSP_0132 ABC D-methionine uptake transporter, substrate-binding protein
YP_001043651.1	PFAM: Citrate transporter; Na+/H+ antiporter NhaC; KEGG: rsp:RSP_0133 Na+/H+ antiporter, NhaC family
YP_001043653.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_001043654.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_001043655.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_001043656.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_001043657.1	KEGG: rsp:RSP_6097 hypothetical protein
YP_001043658.1	PFAM: nitrogen regulatory protein P-II; KEGG: rsp:RSP_0146 nitrogen regulatory protein P-II
YP_001043659.1	KEGG: rsp:RSP_0147 glutamine synthetase class-I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp
YP_001043660.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; KEGG: rsp:RSP_0148 signal transduction histidine kinase
YP_001043661.1	PFAM: response regulator receiver; KEGG: rsp:RSP_0149 CheY-like receiver protein
YP_001043662.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; KEGG: rsp:RSP_0150 CHASE sensor signal transducdtion histidine kinase
YP_001043663.1	PFAM: ATPase associated with various cellular activities, AAA_3; SMART: AAA ATPase; KEGG: rsp:RSP_0152 P-loop ATPase
YP_001043664.1	KEGG: rsp:RSP_0151 hypothetical protein
YP_001043665.1	KEGG: rsp:RSP_0153 hypothetical protein
YP_001043666.1	KEGG: rsp:RSP_0154 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding
YP_001043667.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rsp:RSP_0155 enoyl-CoA hydratase
YP_001043668.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rsp:RSP_0156 acyl-CoA dehydrogenase
YP_001043669.1	KEGG: rsp:RSP_6098 hypothetical protein
YP_001043670.1	KEGG: rsp:RSP_0157 beta-mannanase
YP_001043671.1	KEGG: rsp:RSP_0158 cellulose synthase-like protein
YP_001043672.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rsp:RSP_0159 UDP-glucose 4-epimerase
YP_001043673.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rsp:RSP_0160 NAD-dependent epimerase/dehydratase family protein
YP_001043674.1	KEGG: rsp:RSP_0161 spermidine/putrescine-binding periplasmic protein
YP_001043675.1	KEGG: rsp:RSP_0162 hypothetical protein
YP_001043676.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0163 putative iron(III) ABC transporter, fused inner membrane subunits
YP_001043677.1	KEGG: rsp:RSP_0164 hypothetical protein
YP_001043678.1	KEGG: rsp:RSP_0165 hypothetical protein
YP_001043679.1	KEGG: rsp:RSP_0166 DnaK suppressor protein
YP_001043680.1	PFAM: protein of unknown function DUF442; KEGG: rsp:RSP_0167 hypothetical protein
YP_001043681.1	PFAM: surface presentation of antigens (SPOA) protein; KEGG: rsp:RSP_6099 possible flagellar switch protein FliM
YP_001043682.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_0169 Na+/solute symporter
YP_001043683.1	KEGG: rsp:RSP_0170 hypothetical protein
YP_001043684.1	PFAM: response regulator receiver; KEGG: rsp:RSP_0171 response regulator receiver protein
YP_001043685.1	PFAM: helix-turn-helix domain protein; KEGG: rsp:RSP_0172 predicted transcriptional regulators
YP_001043686.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rsp:RSP_0173 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase
YP_001043687.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_0174 short-chain dehydrogenase
YP_001043688.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rsp:RSP_0175 lactate dehydrogenase and related dehydrogenase
YP_001043689.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_001043690.1	PFAM: FAD linked oxidase domain protein; KEGG: rsp:RSP_0177 FAD/FMN-containing dehydrogenase
YP_001043691.1	KEGG: rsp:RSP_0179 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components TauA
YP_001043692.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0180 ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit
YP_001043693.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0181 ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit
YP_001043694.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO1785 ABC transporter, ATP-binding protein
YP_001043695.1	catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position
YP_001043696.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_001043697.1	PFAM: regulatory protein, TetR; Tetracycline transcriptional regulator YcdC, C-terminal domain protein; KEGG: rsp:RSP_0185 transcriptional regulator, TetR family
YP_001043698.1	PFAM: regulatory protein, TetR; Tetracycline transcriptional regulator YcdC, C-terminal domain protein; KEGG: rsp:RSP_0186 transcriptional regulator, TetR family
YP_001043699.1	catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines
YP_001043700.1	KEGG: rsp:RSP_0188 uncharacterized membrane-associated protein
YP_001043701.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_001043702.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rsp:RSP_0190 biotin carboxyl carrier protein, AccB
YP_001043703.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_001043704.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_001043705.1	KEGG: rsp:RSP_0193 hypothetical protein
YP_001043706.1	PFAM: Mammalian cell entry related domain protein; KEGG: rsp:RSP_0194 possible ABC transporter, substrate-binding protein
YP_001043707.1	Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis
YP_001043708.1	binds and unfolds substrates as part of the ClpXP protease
YP_001043709.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_001043710.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rsp:RSP_0198 phosphatidylglycerophosphate synthase
YP_001043711.1	KEGG: rsp:RSP_0200 ABC transporter, periplasmic binding protein
YP_001043712.1	KEGG: rsp:RSP_0201 ABC transporter, fused inner membrane subunits
YP_001043713.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_6101 ABC transporter, ATPase subunit
YP_001043714.1	PFAM: Allergen V5/Tpx-1 family protein; KEGG: rsp:RSP_0202 hypothetical protein
YP_001043715.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_0203 signal transduction kinase protein
YP_001043716.1	PFAM: beta-lactamase domain protein; KEGG: rsp:RSP_0204 metallo-beta-lactamase family protein
YP_001043717.1	PFAM: chemotaxis sensory transducer; KEGG: rsp:RSP_0218 methyl accepting chemotaxis protein
YP_001043718.1	KEGG: rsp:RSP_4165 transposase IS66
YP_001043719.1	KEGG: rsp:RSP_3313 possible phage integrase family protein
YP_001043720.1	KEGG: nar:Saro_2176 hypothetical protein
YP_001043721.1	PFAM: protein of unknown function DUF262; KEGG: rha:RHA1_ro01680 hypothetical protein
YP_001043722.1	PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rpa:RPA2218 possible ATP-dependent RNA helicase
YP_001043723.1	KEGG: bmb:BruAb1_0743 transcriptional regulator, Cro/CI family
YP_001043724.1	PFAM: protein of unknown function DUF1156; KEGG: rpa:RPA2220 putative DNA methylase
YP_001043725.1	KEGG: rpa:RPA2221 hypothetical protein
YP_001043727.1	PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: sil:SPO3675 hypothetical protein
YP_001043728.1	KEGG: nwi:Nwi_1946 probable transmembrane protein
YP_001043729.1	KEGG: eba:ebA806 hypothetical protein
YP_001043730.1	KEGG: rxy:Rxyl_0343 methyltransferase type 12
YP_001043731.1	PFAM: Uracil-DNA glycosylase superfamily; KEGG: cph:Cpha266_2236 uracil-DNA glycosylase superfamily
YP_001043732.1	KEGG: aeh:Mlg_0506 hypothetical protein
YP_001043733.1	PFAM: N-6 DNA methylase; KEGG: ccr:CC0620 type I restriction-modification system, M subunit, putative
YP_001043734.1	PFAM: restriction modification system DNA specificity domain; KEGG: syc:syc0484_c type I restriction-modification
YP_001043735.1	PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; KEGG: bps:BPSL0945 type I restriction enzyme, R subunit
YP_001043737.1	KEGG: mlo:mlr6150 transposase
YP_001043739.1	KEGG: sil:SPO1237 hypothetical protein
YP_001043740.1	PFAM: Integrase, catalytic region; KEGG: rsp:RSP_1966 possible ISSod13, transposase
YP_001043741.1	KEGG: pfl:PFL_3336 hypothetical protein
YP_001043742.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_1649 possible transporter, DMT superfamily
YP_001043743.1	KEGG: rsp:RSP_6104 calcium-binding protein
YP_001043744.1	PFAM: chalcone and stilbene synthases domain protein; Chalcone and stilbene synthases domain protein; FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: rsp:RSP_0226 naringenin-chalcone synthase
YP_001043745.1	PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rsp:RSP_0227 hypothetical protein
YP_001043746.1	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_0229 multidrug efflux pump, MF superfamily
YP_001043747.1	KEGG: rsp:RSP_0228 putative hemin transport protein
YP_001043748.1	KEGG: rsp:RSP_0230 neutral zinc metallopeptidase; PFAM: Hemolysin-type calcium-binding region; Peptidase M10, serralysin-like; SMART: peptidase, metallopeptidases
YP_001043749.1	KEGG: rsp:RSP_6105 hypothetical protein
YP_001043750.1	PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_0231 flagellar MotB protein
YP_001043751.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: rsp:RSP_0233 flagellar motor protein MotA
YP_001043752.1	PFAM: chemotaxis sensory transducer; KEGG: rsp:RSP_0234 TlpL, putative cytoplasmic chemoreceptor
YP_001043753.1	KEGG: rsp:RSP_6106 hypothetical protein
YP_001043754.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_001043755.1	PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_0236 AgaE protein
YP_001043756.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine
YP_001043757.1	KEGG: rsp:RSP_0238 hypothetical protein
YP_001043758.1	PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: rsp:RSP_0239 pyridine nucleotide transhydrogenase beta subunit
YP_001043759.1	forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm
YP_001043760.1	KEGG: rsp:RSP_0241 putative protein-S-isoprenylcysteine methyltransferase
YP_001043761.1	TIGRFAM: kynureninase; PFAM: aminotransferase, class V; KEGG: rsp:RSP_0242 probable kyurenine hydrolase
YP_001043762.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rsp:RSP_0243 putative lipoprotein
YP_001043763.1	PFAM: peptidase C26; KEGG: rsp:RSP_0244 predicted glutamine amidotransferase
YP_001043764.1	PFAM: aminotransferase, class V; KEGG: rsp:RSP_0245 serine-pyruvate aminotransferase/aspartate aminotransferase
YP_001043765.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0246 ABC lipid efflux transporter, fused ATPase and inner membrane subunits
YP_001043766.1	PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: rsp:RSP_0247 aminomethyltransferase related to GcvT
YP_001043767.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_001043768.1	KEGG: rsp:RSP_6107 hypothetical protein
YP_001043769.1	KEGG: rsp:RSP_0250 hypothetical protein
YP_001043770.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: rsp:RSP_0251 outer membrane efflux protein
YP_001043771.1	PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; KEGG: rsp:RSP_0252 protein-L-isoaspartate carboxylmethyltransferase
YP_001043772.1	PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_0253 glycine/D-amino acid oxidase (deaminating)
YP_001043773.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_001043774.1	KEGG: rsp:RSP_0255 intrinsic membrane PufX protien
YP_001043775.1	TIGRFAM: photosynthetic reaction center, M subunit; PFAM: photosynthetic reaction centre protein; KEGG: rsp:RSP_0256 PufM, photosynthetic reaction center M subunit
YP_001043776.1	TIGRFAM: photosynthetic reaction center L subunit; PFAM: photosynthetic reaction centre protein; KEGG: rsp:RSP_0257 PufL, photosynthetic reaction center L subunit
YP_001043777.1	PFAM: antenna complex, alpha/beta subunit; KEGG: rsp:RSP_0258 LHI alpha, light-harvesting B875 protein
YP_001043778.1	PFAM: antenna complex, alpha/beta subunit; KEGG: rsp:RSP_6108 LHI beta, light-harvesting B875 subunit
YP_001043779.1	PFAM: PufQ cytochrome subunit; KEGG: rsp:RSP_0259 protein PufQ
YP_001043780.1	TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase, component 1; protein of unknown function DUF1197; KEGG: rsp:RSP_0260 putative chlorophyllide reductase, BchZ subunit
YP_001043781.1	TIGRFAM: chlorophyllide reductase subunit Y; KEGG: rsp:RSP_0261 chlorophyllide reductase, BchY subunit
YP_001043782.1	KEGG: rsp:RSP_0262 chlorophyllide reductase, BchX subunit; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein
YP_001043783.1	TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rsp:RSP_0263 chlorophyll synthesis pathway, BchC
YP_001043784.1	PFAM: O-methyltransferase, family 2; KEGG: rsp:RSP_0264 hydroxyneurosporene methyltransferase
YP_001043785.1	PFAM: Polyprenyl synthetase; KEGG: rsp:RSP_0265 geranylgeranyl pyrophosphate synthetase
YP_001043786.1	TIGRFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rsp:RSP_0266 methoxyneurosporene dehydrogenase
YP_001043787.1	PFAM: hydroxyneurosporene synthase; KEGG: rsp:RSP_0267 hydroxyneurosporene dehydrogenase
YP_001043788.1	PFAM: TspO/MBR family protein; KEGG: rsp:RSP_0269 tryptophan rich sensory protein
YP_001043789.1	PFAM: Squalene/phytoene synthase; KEGG: rsp:RSP_0270 squalene/phytoene synthase
YP_001043790.1	TIGRFAM: Phytoene dehydrogenase-related protein; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rsp:RSP_0271 phytoene dehydrogenase
YP_001043791.1	KEGG: rsp:RSP_0272 spheroidene monooxygenase
YP_001043792.1	involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; part of a complex with BchI, BchD, and BchH
YP_001043793.1	involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; part of a complex with BchI, BchD, and BchH
YP_001043794.1	PFAM: alpha/beta hydrolase fold; KEGG: rsp:RSP_0275 magnesium-chelatase, BchO
YP_001043795.1	KEGG: rsp:RSP_0276 isopentenyl-diphosphate delta-isomerase; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; PFAM: NUDIX hydrolase
YP_001043796.1	TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; Lycopene beta and epsilon cyclase; KEGG: rsp:RSP_0277 geranylgeranyl hydrogenase
YP_001043797.1	PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: rsp:RSP_0278 putative light-harvesting 1 (B870) complex assembly protein PucC
YP_001043798.1	TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: rsp:RSP_0279 bacteriochlorophyll a synthase
YP_001043799.1	TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase, 4VR; KEGG: rsp:RSP_0280 bacteriochlorophyll synthase, 23 kDa subunit (BchJ)
YP_001043800.1	KEGG: rsp:RSP_0281 magnesium-protoporphyrin IX monomethylester oxidative cyclase, 66 kDa subunit(BchE); TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_001043801.1	KEGG: rsp:RSP_0282 transcriptional regulator, PpsR; TIGRFAM: PAS sensor protein; transcriptional regulator PpsR; PFAM: helix-turn-helix, Fis-type; PAS fold domain protein; SMART: PAS domain containing protein
YP_001043802.1	KEGG: rsp:RSP_0283 regulatory protein, PpaA
YP_001043803.1	PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: rsp:RSP_0284 2-vinyl bacteriochlorophyllide hydratase
YP_001043804.1	light-independent reduction of protochlorophyllide to form chlorophyllide a
YP_001043805.1	light-independent reduction of protochlorophyllide to form chlorophyllide a
YP_001043806.1	involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; the enzyme from Rhodobacter capsulatus contains an Fe-S cluster; part of a complex with BchI, BchD, and BchH
YP_001043807.1	light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production
YP_001043808.1	catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine
YP_001043809.1	PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: rsp:RSP_0290 light-harvesting 1 (B870) complex assembly
YP_001043810.1	TIGRFAM: photosynthetic reaction center H subunit; PFAM: photosynthetic reaction centre, H-chain; PRC-barrel domain protein; KEGG: rsp:RSP_0291 reaction centre H protein
YP_001043811.1	KEGG: rsp:RSP_0292 hypothetical protein
YP_001043812.1	KEGG: rsp:RSP_0293 hypothetical protein
YP_001043813.1	KEGG: rsp:RSP_6110 hypothetical protein
YP_001043814.1	oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis
YP_001043815.1	KEGG: rsp:RSP_0295 hypothetical protein
YP_001043816.1	PFAM: cytochrome c, class I; KEGG: rsp:RSP_0296 cytochrome c2
YP_001043817.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0297 ABC branched chain amino acid transporter, ATPase subunit
YP_001043818.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0298 ABC branched chain amino acid transporter, ATPase subunit
YP_001043819.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_0299 ABC branched chain amino acid transporter, inner membrane subunit
YP_001043820.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_0300 ABC branched chain amino acid transporter, inner membrane subunit
YP_001043821.1	KEGG: rsp:RSP_0301 ABC branched chain amino acid transporter, substrate binding protein
YP_001043822.1	TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; KEGG: rsp:RSP_0302 urease accessory protein G
YP_001043823.1	PFAM: Urease accessory protein UreF; KEGG: rsp:RSP_0303 urease accessory protein UreF
YP_001043824.1	involved in the assembly of the urease metallocenter; possible nickel donor
YP_001043826.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_001043827.1	KEGG: rsp:RSP_0306 class I diheme cytochrome c
YP_001043828.1	KEGG: rsp:RSP_0307 antifreeze protein, type I
YP_001043829.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active
YP_001043830.1	UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter
YP_001043831.1	PFAM: Urease accessory protein UreD; KEGG: rsp:RSP_0310 urease accessory protein UreD
YP_001043832.1	PFAM: aminoglycoside phosphotransferase; KEGG: rsp:RSP_0311 putative aminotransferase protein
YP_001043833.1	PFAM: aminotransferase class-III; KEGG: rsp:RSP_0312 aminotransferase class-III
YP_001043834.1	PFAM: antenna complex, alpha/beta subunit; KEGG: rsp:RSP_0314 LHII beta, light-harvesting B800/850 protein
YP_001043835.1	PFAM: antenna complex, alpha/beta subunit; KEGG: rsp:RSP_6256 LHII alpha, light-harvesting B800/850 protein
YP_001043836.1	PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: rsp:RSP_0315 light-harvesting 1 (B870) complex assembly
YP_001043837.1	PFAM: regulatory protein, LuxR; KEGG: rsp:RSP_0316 transcriptional regulator, LuxR family
YP_001043838.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001043839.1	PFAM: NnrUfamily protein; KEGG: rsp:RSP_0318 hypothetical protein
YP_001043840.1	KEGG: rsp:RSP_0319 NnrU
YP_001043841.1	KEGG: rsp:RSP_0320 NnrT
YP_001043842.1	PFAM: von Willebrand factor, type A; KEGG: rsp:RSP_0321 NorD nitric oxide reductase activation protein
YP_001043843.1	PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: rsp:RSP_0322 NorQ protein required for nitric oxide reductase activity
YP_001043844.1	PFAM: cytochrome c oxidase, subunit I; KEGG: rsp:RSP_0323 nitric oxide reductase large subunit, cytochrome b
YP_001043845.1	KEGG: rsp:RSP_0324 nitric oxide reductase subunit C, cytochrome c
YP_001043846.1	KEGG: rsp:RSP_0325 hypothetical protein
YP_001043847.1	KEGG: rsp:RSP_0326 hypothetical protein
YP_001043848.1	PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rsp:RSP_0327 Crp-Fnr regulatory protein (NnrR)
YP_001043849.1	PFAM: NnrS family protein; KEGG: rsp:RSP_0328 hypothetical protein
YP_001043850.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: rsp:RSP_0329 GAF sensor diguanylate cyclase (GGDEF)
YP_001043851.1	KEGG: rsp:RSP_0330 hypothetical protein
YP_001043852.1	PFAM: glycoside hydrolase, family 8; KEGG: rsp:RSP_0331 hypothetical protein
YP_001043853.1	KEGG: rsp:RSP_0332 possible cellulose synthase
YP_001043854.1	PFAM: glycosyl transferase, family 2; type IV pilus assembly PilZ; KEGG: rsp:RSP_0333 possible cellulose synthase
YP_001043855.1	KEGG: rsp:RSP_0334 hypothetical protein
YP_001043856.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: rsp:RSP_0335 probable dicyclicGMP cyclasephosphodiesterase
YP_001043857.1	PFAM: metallophosphoesterase; KEGG: rsp:RSP_0337 possible phospodiesterase
YP_001043858.1	PFAM: diacylglycerol kinase, catalytic region; KEGG: rsp:RSP_0338 hypothetical protein
YP_001043859.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rsp:RSP_0339 hypothetical protein
YP_001043860.1	PFAM: protein of unknown function UPF0118; KEGG: rsp:RSP_0340 hypothetical protein
YP_001043861.1	Catalyzes the deamination of cytosine to uracil and ammonia
YP_001043862.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_0342 putative ABC sugar transporter, inner membrane subunit
YP_001043863.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_0343 putative ABC sugar transporter, inner membrane subunit
YP_001043864.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0344 putative ABC sugar transporter, fused ATPase subunits
YP_001043865.1	PFAM: basic membrane lipoprotein; KEGG: rsp:RSP_0345 possible ABC transporter, periplasmic binding protein
YP_001043866.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_0346 ABC transporter, substrate binding protein
YP_001043867.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0347 ABC transporter, inner membrane subunit
YP_001043868.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0348 ABC transporter, inner membrane subunit
YP_001043869.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_0349 ABC transporter, ATPase subunit
YP_001043870.1	KEGG: rsp:RSP_0350 hypothetical protein
YP_001043871.1	PFAM: aldo/keto reductase; KEGG: rsp:RSP_0351 D-threo-aldose 1-dehydrogenase
YP_001043872.1	PFAM: ferredoxin; KEGG: rsp:RSP_0352 probable ferredoxin
YP_001043873.1	PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: rde:RD1_1924 DNA polymerase III alpha subunit, putative
YP_001043874.1	KEGG: rsp:RSP_0354 hypothetical protein
YP_001043875.1	TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rsp:RSP_0355 possible serine protease
YP_001043876.1	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: rsp:RSP_0356 probable HflC protein
YP_001043877.1	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: rsp:RSP_0357 probable HflK protein
YP_001043878.1	TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rsp:RSP_0358 probable glutathione reductase
YP_001043879.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_001043880.1	KEGG: rsp:RSP_0360 hypothetical protein
YP_001043881.1	KEGG: rsp:RSP_0361 probable L-serine dehydratase protein; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain
YP_001043882.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_0364 possible transporter, RarD family, DMT superfamily
YP_001043883.1	TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: rsp:RSP_0363 hypothetical protein
YP_001043884.1	KEGG: rsp:RSP_0365 hypothetical protein
YP_001043885.1	KEGG: rsp:RSP_6113 hypothetical protein
YP_001043886.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_001043887.1	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: rsp:RSP_0367 preprotein translocase SecG subunit
YP_001043888.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_001043889.1	PFAM: protein of unknown function DUF519; KEGG: rsp:RSP_0369 hypothetical protein
YP_001043890.1	PFAM: protein of unknown function DUF1332; KEGG: rsp:RSP_0370 hypothetical protein
YP_001043891.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0371 ABC basic amino acid transporter, ATPase subunit
YP_001043892.1	PFAM: extracellular solute-binding protein, family 3; KEGG: rsp:RSP_0372 ABC basic amino acid transporter, solute-binding protein
YP_001043893.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0373 ABC basic amino acid transporter, inner membrane subunit
YP_001043894.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0374 ABC basic amino acid transporter, inner membrane subunit
YP_001043895.1	PFAM: glutamine synthetase, catalytic region; KEGG: rsp:RSP_0375 probable glutamine synthetase
YP_001043896.1	PFAM: glutamine amidotransferase class-I; KEGG: rsp:RSP_0376 glutamine amidotransferase class-I
YP_001043897.1	KEGG: bam:Bamb_2417 hypothetical protein
YP_001043898.1	PFAM: Pathogenesis-related transcriptional factor and ERF protein; KEGG: ngo:NGO1102 hypothetical protein, putative phage associated protein
YP_001043899.1	PFAM: Integrase, catalytic region; KEGG: bpm:BURPS1710b_1776 integrase core domain protein
YP_001043900.1	PFAM: transposase IS3/IS911 family protein; KEGG: sil:SPOA0091 IS3 family transposase orfA
YP_001043901.1	KEGG: rsp:RSP_6250 hypothetical protein
YP_001043902.1	PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: bms:BR1082 site-specific recombinase, resolvase family
YP_001043903.1	KEGG: dde:Dde_0780 hypothetical protein
YP_001043904.1	PFAM: helicase domain protein; KEGG: dde:Dde_0781 helicase-like
YP_001043905.1	PFAM: phage integrase family protein; KEGG: psp:PSPPH_1897 chorismate mutase family protein
YP_001043906.1	PFAM: glutamine synthetase, catalytic region; KEGG: rsp:RSP_0377 probable glutamine synthetase
YP_001043907.1	PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_0378 hypothetical protein
YP_001043908.1	PFAM: aminotransferase class-III; KEGG: rsp:RSP_0379 putative aminotransferase protein
YP_001043909.1	TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: rsp:RSP_0380 hypothetical protein
YP_001043910.1	KEGG: rsp:RSP_0381 hypothetical protein
YP_001043911.1	TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rsp:RSP_0382 poly-beta-hydroxybutyrate polymerase
YP_001043912.1	TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: rsp:RSP_0383 hypothetical protein
YP_001043913.1	KEGG: rsp:RSP_0384 hypothetical protein
YP_001043914.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_001043915.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rsp:RSP_0386 cold-shock DNA-binding domain protein
YP_001043916.1	PFAM: arsenate reductase and related; KEGG: rsp:RSP_0387 hypothetical protein
YP_001043917.1	KEGG: rsp:RSP_0388 hypothetical protein
YP_001043918.1	PFAM: dihydrofolate reductase region; KEGG: rsp:RSP_0389 dihydrofolate reductase
YP_001043919.1	PFAM: thymidylate synthase; KEGG: rsp:RSP_0390 thymidylate synthase
YP_001043920.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rsp:RSP_0392 probable lactoylglutathione lyase
YP_001043921.1	TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: rsp:RSP_0393 probable riboflavin biosynthesis protein
YP_001043922.1	PFAM: ATP-cone domain protein; KEGG: rsp:RSP_0394 hypothetical protein
YP_001043923.1	KEGG: rsp:RSP_0396 hypothetical protein
YP_001043924.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria
YP_001043925.1	synthesizes RNA primers at the replication forks
YP_001043926.1	PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: rsp:RSP_0398 dehydrogenase
YP_001043927.1	KEGG: rsp:RSP_0399 hypothetical protein
YP_001043928.1	KEGG: rsp:RSP_0400 hypothetical protein
YP_001043929.1	KEGG: rsp:RSP_0401 hypothetical protein
YP_001043930.1	PFAM: regulatory protein, TetR; KEGG: rsp:RSP_0402 transcriptional regulator, TetR family
YP_001043932.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_001043933.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_001043934.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: rsp:RSP_0405 probable single-stranded DNA-specific exonuclease
YP_001043935.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: rsp:RSP_0406 periplasmic sensor diguanylate cyclase (GGDEF)
YP_001043936.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rsp:RSP_0407 D-lactate dehydrogenase
YP_001043937.1	KEGG: rsp:RSP_0408 hypothetical protein
YP_001043938.1	PFAM: CHAD domain containing protein; KEGG: rsp:RSP_0409 hypothetical protein
YP_001043939.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rsp:RSP_0410 sensor diguanylate cyclase (GGDEF)
YP_001043940.1	PFAM: Heme NO binding domain protein; KEGG: rsp:RSP_6114 hypothetical protein
YP_001043941.1	KEGG: rsp:RSP_0411 hypothetical protein
YP_001043942.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rsp:RSP_0412 putative phosphatase
YP_001043943.1	KEGG: rsp:RSP_6115 hypothetical protein
YP_001043944.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: rsp:RSP_0413 two component diguanylate cyclase
YP_001043945.1	KEGG: rsp:RSP_0414 hypothetical protein
YP_001043946.1	KEGG: rsp:RSP_6227 hypothetical protein
YP_001043947.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_001043948.1	SMART: Calcium-binding EF-hand-containing protein; KEGG: rsp:RSP_0416 putative calcium-binding EF-hand domain protein
YP_001043949.1	PFAM: protein of unknown function DUF983; KEGG: rsp:RSP_0418 hypothetical protein
YP_001043950.1	PFAM: NUDIX hydrolase; KEGG: rsp:RSP_0419 hypothetical protein
YP_001043951.1	KEGG: rsp:RSP_0420 hypothetical protein
YP_001043952.1	PFAM: Lipocalin family protein; KEGG: rsp:RSP_0421 putative outer membrane lipoprotein Blc
YP_001043953.1	KEGG: rsp:RSP_0422 hypothetical protein
YP_001043954.1	PFAM: aldo/keto reductase; KEGG: rsp:RSP_0423 aldo/keto reductase
YP_001043955.1	KEGG: rsp:RSP_0424 hypothetical protein
YP_001043956.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_001043957.1	PFAM: cyclic nucleotide-binding; sodium/hydrogen exchanger; KEGG: rsp:RSP_0426 putative Na+/H+ antiporter with cyclic nucleotide-binding domain
YP_001043958.1	KEGG: rsp:RSP_0427 hypothetical protein
YP_001043959.1	KEGG: rsp:RSP_0428 hypothetical protein
YP_001043960.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0429 probable ABC drug/toxin efflux transporter; fused ATPase and inner membrane subunits
YP_001043961.1	KEGG: rsp:RSP_6228 hypothetical protein
YP_001043962.1	TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: rsp:RSP_0430 cobalamin biosynthesis protein CobD
YP_001043963.1	TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: rsp:RSP_0431 putative selenocysteine lyase
YP_001043964.1	KEGG: rsp:RSP_0432 hypothetical protein
YP_001043965.1	KEGG: rsp:RSP_0433 hypothetical protein
YP_001043966.1	PFAM: SufBD protein; KEGG: rde:RD1_2692 FeS assembly protein SufD, putative
YP_001043967.1	KEGG: rsp:RSP_0437 Suf C, ATPase; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase
YP_001043968.1	PFAM: protein of unknown function DUF74; KEGG: rsp:RSP_0439 hypothetical protein
YP_001043969.1	with SufCD activates cysteine desulfurase SufS
YP_001043970.1	PFAM: aminotransferase, class V; KEGG: rsp:RSP_0442 putative aminotransferase
YP_001043971.1	TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rsp:RSP_0443 Rrf2 family transcriptional regulator
YP_001043972.1	KEGG: rsp:RSP_0444 hypothetical protein
YP_001043973.1	KEGG: rsp:RSP_0445 hypothetical protein
YP_001043974.1	Converts isocitrate to alpha ketoglutarate
YP_001043975.1	PFAM: protein of unknown function DUF161; KEGG: rsp:RSP_0447 hypothetical protein
YP_001043976.1	TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: rsp:RSP_0448 EF-Tu; elongation factor Tu
YP_001043977.1	KEGG: rsp:RSP_0449 putative glutamine amidotransferase
YP_001043978.1	PFAM: protein of unknown function DUF1330; KEGG: rsp:RSP_0450 hypothetical protein
YP_001043979.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001043980.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_001043981.1	KEGG: rsp:RSP_0453 hypothetical protein
YP_001043982.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_0454 multisensor hybrid histidine kinase
YP_001043983.1	PFAM: Fmu (Sun) domain protein; KEGG: rsp:RSP_0455 possible NOL1/NOP2/sun family protein
YP_001043984.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: rsp:RSP_0457 probable glycerol-3-phosphate regulon repressor
YP_001043985.1	KEGG: rsp:RSP_0456 hypothetical protein
YP_001043986.1	KEGG: rsp:RSP_0458 hypothetical protein
YP_001043987.1	PFAM: protein of unknown function DUF475; KEGG: rsp:RSP_0459 hypothetical protein
YP_001043988.1	PFAM: acriflavin resistance protein; KEGG: rsp:RSP_0460 AcrB/AcrD/AcrF family cation/multidrug efflux pump
YP_001043989.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rsp:RSP_0461 multidrug/cation efflux pump, membrane fusion protein (MFP) family
YP_001043990.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rsp:RSP_0463 cation efflux transporter, CDF family
YP_001043991.1	PFAM: peptidase U32; KEGG: rsp:RSP_0464 putative protease
YP_001043992.1	PFAM: peptidase U32; KEGG: rsp:RSP_0465 putative protease
YP_001043993.1	KEGG: rsp:RSP_0466 hypothetical protein
YP_001043994.1	TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: rsp:RSP_0467 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
YP_001043995.1	TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: rsp:RSP_0468 putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
YP_001043996.1	catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate
YP_001043997.1	KEGG: rsp:RSP_0470 hypothetical protein
YP_001043998.1	KEGG: rsp:RSP_6116 hypothetical protein
YP_001043999.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rsp:RSP_0472 hypothetical protein
YP_001044000.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: rsp:RSP_0473 phospholipase-D family protein
YP_001044001.1	PFAM: cytochrome c, class II; KEGG: rsp:RSP_0474 cytochrome c'
YP_001044002.1	PFAM: cytochrome B561; KEGG: rsp:RSP_0475 cytochrome b
YP_001044003.1	PFAM: class II aldolase/adducin family protein; KEGG: rsp:RSP_0476 L-fuculose-phosphate aldolase
YP_001044004.1	KEGG: rsp:RSP_0477 hypothetical protein
YP_001044005.1	PFAM: tRNA synthetase, class II (D, K and N); KEGG: rsp:RSP_0478 putative lysyl-tRNA synthetase
YP_001044006.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_001044007.1	PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: rsp:RSP_0480 D-mannonate oxidoreductase
YP_001044008.1	TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_0481 possible 2-deoxy-D-gluconate 3-dehydrogenase
YP_001044009.1	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
YP_001044010.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: rsp:RSP_0483 hypothetical protein
YP_001044011.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_0484 TRAP-T family transporter, DctM (12 TMs) subunit
YP_001044012.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rsp:RSP_0485 TRAP-T family transporter, DctQ (4 TMs) subunit
YP_001044013.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_0487 TRAP-T family transporter, DctP (periplasmic binding) subunit
YP_001044014.1	catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism
YP_001044015.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_0489 GntR family transcriptional regulator
YP_001044016.1	PFAM: PfkB domain protein; KEGG: rsp:RSP_0490 carbohydrate kinase
YP_001044017.1	KEGG: rsp:RSP_0491 hydrogen uptake histidine-kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein
YP_001044018.1	PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rsp:RSP_0492 hydrogenase small subunit
YP_001044019.1	PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rsp:RSP_0493 hydrogenase large subunit
YP_001044020.1	TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; KEGG: rsp:RSP_0494 hydrogenase maturation factor F
YP_001044021.1	KEGG: rsp:RSP_0495 hydrogenase protein small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein
YP_001044022.1	PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rsp:RSP_0496 hydrogenase protein large subunit
YP_001044023.1	PFAM: HupE/UreJ protein; KEGG: rsp:RSP_0497 HupE/UreJ accessory protein
YP_001044024.1	TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: rsp:RSP_0498 Ni, Fe hydrogenase I cytochrome b subunit
YP_001044025.1	TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; hydrogenase maturation peptidase superfamily; PFAM: peptidase M52, hydrogen uptake protein; KEGG: rsp:RSP_0499 HycI, hydrogenase maturation protease
YP_001044026.1	PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rsp:RSP_0500 putative HupF/HypC hydrogenase protein
YP_001044027.1	PFAM: hydrogenase-1 expression HyaE; KEGG: rsp:RSP_0501 HupG hydrogenase expression/formation protein
YP_001044028.1	PFAM: HupH hydrogenase expression protein; KEGG: rsp:RSP_0502 HupH hydrogenase expression/formation protein
YP_001044029.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rsp:RSP_0503 HupJ, contains rubredoxin domain
YP_001044030.1	KEGG: rsp:RSP_0504 HupK
YP_001044031.1	TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; KEGG: rsp:RSP_0505 hydrogenase expression/synthesis, HypA family
YP_001044032.1	TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: rsp:RSP_0506 NI2+-binding GTPase protein HypB
YP_001044033.1	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; KEGG: rsp:RSP_0507 HupR response regulator
YP_001044034.1	TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rsp:RSP_0508 hydrogenase expression/formation protein HypC
YP_001044035.1	TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: rsp:RSP_0509 hydrogenase isoenzyme formation protein HypD
YP_001044036.1	TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rsp:RSP_0510 hydrogenase expression/formation protein HypE
YP_001044037.1	SMART: Rhodanese domain protein; KEGG: rsp:RSP_6117 hypothetical protein containing PspE/rhodanese-related domain
YP_001044038.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rsp:RSP_0511 two component transcriptional regulator, LuxR family
YP_001044039.1	KEGG: rsp:RSP_0512 multisensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_001044040.1	PFAM: glycoside hydrolase, family 16; Hemolysin-type calcium-binding region; KEGG: rsp:RSP_0513 hypothetical protein
YP_001044041.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rsp:RSP_0514 dTDP-glucose 4,6-dehydratase protein
YP_001044042.1	KEGG: rsp:RSP_0515 hypothetical protein
YP_001044043.1	KEGG: rsp:RSP_0516 hypothetical protein
YP_001044044.1	KEGG: rsp:RSP_0517 hypothetical protein
YP_001044045.1	PFAM: glycosyl transferase, group 1; KEGG: rsp:RSP_0518 putative glycosyltransferase protein
YP_001044046.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rsp:RSP_0519 NAD-dependent epimerase/dehydratase
YP_001044047.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KR; KEGG: rsp:RSP_0520 NAD-dependent dehydratase/epimerase
YP_001044048.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsp:RSP_0521 putative Zn-containing dehydrogenase
YP_001044049.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rsp:RSP_0522 putative oxidoreductase
YP_001044050.1	PFAM: Ku domain protein; KEGG: rsp:RSP_0523 hypothetical protein
YP_001044051.1	PFAM: Ku domain protein; KEGG: rsp:RSP_0524 hypothetical protein
YP_001044052.1	PFAM: Hly-III family protein; KEGG: rsp:RSP_0525 hypothetical protein
YP_001044053.1	KEGG: rsp:RSP_0526 hypothetical protein
YP_001044054.1	TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: rsp:RSP_0527 sigma-54, RpoN
YP_001044055.1	associates with NifD and may protect the nitrogenase Fe-Mo protein from oxidative damage
YP_001044056.1	TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: rsp:RSP_0529 homocitrate synthase
YP_001044057.1	PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rsp:RSP_0530 cysteine desulfurase
YP_001044058.1	PFAM: nitrogen-fixing NifU domain protein; KEGG: rsp:RSP_0531 nitrogen fixation protein
YP_001044059.1	TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rsp:RSP_0532 hypothetical protein
YP_001044060.1	PFAM: NifQ family protein; KEGG: rsp:RSP_0533 putative nitrogen fixation protein NifQ
YP_001044061.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rsp:RSP_0534 putative dimeric ferredoxin (FdIII)
YP_001044062.1	PFAM: protein of unknown function DUF269; KEGG: rsp:RSP_0535 hypothetical protein
YP_001044063.1	TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: rsp:RSP_0536 putative nitrogenase molybdenum-iron protein NifX
YP_001044064.1	in some organisms the NifE and NifN proteins are encoded separately; functions in assembly of FeMo cofactor; functions in assembly of nitrogenase MoFe
YP_001044065.1	KEGG: rsp:RSP_0539 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase, component 1
YP_001044066.1	KEGG: rsp:RSP_0540 nitrogenase iron-molybdenum protein, alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1
YP_001044067.1	nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis
YP_001044068.1	KEGG: rsp:RSP_0542 hypothetical protein
YP_001044069.1	PFAM: NifT/FixU family protein; KEGG: rsp:RSP_0543 hypothetical protein
YP_001044070.1	PFAM: NifZ family protein; KEGG: rsp:RSP_0544 probable NifZ
YP_001044071.1	PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: rsp:RSP_0545 hypothetical protein
YP_001044072.1	TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; Radical SAM domain protein; KEGG: rsp:RSP_0546 NifB family--FeMo cofactor biosynthesis protein
YP_001044073.1	KEGG: rsp:RSP_0547 NifA transcriptional activator; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_001044074.1	PFAM: Rhodanese domain protein; KEGG: rsp:RSP_0548 hypothetical protein
YP_001044075.1	PFAM: Sporulation domain protein; KEGG: rsp:RSP_0549 hypothetical protein
YP_001044076.1	PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: rsp:RSP_0550 putative D-alanyl-D-alanine carboxypeptidase
YP_001044077.1	PFAM: thymidylate kinase; KEGG: rsp:RSP_0551 putative thymidylate kinase
YP_001044078.1	KEGG: rsp:RSP_6118 hypothetical protein
YP_001044079.1	PFAM: small multidrug resistance protein; KEGG: rsp:RSP_0552 putative multidrug transporter, SMR family, DMT superfamily
YP_001044080.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_001044081.1	putative metalloprotease
YP_001044082.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_001044083.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_001044084.1	PFAM: protein of unknown function DUF1127; KEGG: rsp:RSP_0557 hypothetical protein
YP_001044085.1	PFAM: methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 12; KEGG: rsp:RSP_0558 possible ribosomal protein L11 methyltransferase
YP_001044086.1	KEGG: rsp:RSP_0559 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A
YP_001044087.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_001044088.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_001044089.1	KEGG: rsp:RSP_0562 hypothetical protein
YP_001044090.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_001044091.1	KEGG: rsp:RSP_0564 hypothetical protein
YP_001044092.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rsp:RSP_0565 putative phosphatidylcholine synthase
YP_001044093.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_0566 possible transporter, DMT superfamily
YP_001044094.1	TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: rsp:RSP_0567 probable methylated-DNA-(protein)-cysteine S-methyltransferase
YP_001044095.1	KEGG: rsp:RSP_6119 hypothetical protein
YP_001044096.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_001044097.1	PFAM: conserved hypothetical protein 1620; KEGG: rsp:RSP_0569 hypothetical protein
YP_001044098.1	PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: rsp:RSP_0570 hypothetical protein
YP_001044099.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_001044100.1	KEGG: rsp:RSP_0572 putative exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease
YP_001044101.1	PFAM: response regulator receiver; KEGG: rsp:RSP_0573 response regulator receiver protein
YP_001044102.1	KEGG: rsp:RSP_0574 hypothetical protein
YP_001044103.1	PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: rsp:RSP_0575 predicted signal transduction protein containing cyclic nucleotide-binding and CBS domains
YP_001044104.1	PFAM: Na+/solute symporter; KEGG: rsp:RSP_0576 Na+/solute symporter
YP_001044105.1	KEGG: rsp:RSP_0577 hypothetical protein
YP_001044106.1	TIGRFAM: adenylate kinases; PFAM: adenylate kinase; adenylate kinase, lid domain protein; KEGG: rsp:RSP_0578 adenylate kinase
YP_001044107.1	TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: rsp:RSP_0579 acetyl-coenzyme A synthetase
YP_001044108.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: rsp:RSP_0580 putative sulfate transporter, SulP family
YP_001044109.1	PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rsp:RSP_0581 hypothetical protein
YP_001044110.1	TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: rsp:RSP_0582 possible penicillin binding protein
YP_001044111.1	KEGG: rsp:RSP_0583 hypothetical protein
YP_001044112.1	class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine
YP_001044113.1	PFAM: OsmC family protein; KEGG: rsp:RSP_0585 osmotically inducible protein OsmC
YP_001044114.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_001044115.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_001044116.1	KEGG: rsp:RSP_0588 hypothetical protein
YP_001044117.1	KEGG: rsp:RSP_0589 hypothetical protein
YP_001044118.1	KEGG: rsp:RSP_6120 hypothetical protein
YP_001044119.1	KEGG: rsp:RSP_0590 hypothetical protein
YP_001044120.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rsp:RSP_0591 cold-shock protein
YP_001044121.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rsp:RSP_0592 putative lipase/esterase
YP_001044122.1	PFAM: sulfatase; KEGG: rsp:RSP_0594 putative choline sulfatase
YP_001044123.1	PFAM: Lipocalin family protein; KEGG: rsp:RSP_0595 putative outer membrane lipoprotein Blc
YP_001044124.1	PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: rsp:RSP_0596 putative peptidyl-dipeptidase
YP_001044125.1	PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rsp:RSP_0597 probable molybdopterin biosynthesis protein
YP_001044126.1	catalyzes the formation of dUMP from dUTP
YP_001044127.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_001044128.1	KEGG: rsp:RSP_0600 hypothetical protein
YP_001044129.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma-32 is responsible for the expression of heat shock promoters; there are paralogs in Rhizobium and Sinorhizobium; the proteins in this cluster act as secondary heat shock sigma factors; the Rhizobium sigma-32 factor may also be involved in exopolysaccharide production
YP_001044130.1	PFAM: cobalbumin biosynthesis enzyme; KEGG: rsp:RSP_0602 possible adenosyl cobinamide kinase/cobinamide phosphate guanylyltransferase
YP_001044131.1	PFAM: Phosphoglycerate mutase; KEGG: rsp:RSP_0603 hypothetical protein
YP_001044132.1	PFAM: phage integrase family protein; KEGG: mag:amb3645 integrase
YP_001044133.1	PFAM: ParB domain protein nuclease; KEGG: rsp:RSP_2079 hypothetical protein
YP_001044134.1	KEGG: rsp:RSP_3610 hypothetical protein
YP_001044135.1	KEGG: rsp:RSP_1651 hypothetical protein
YP_001044136.1	KEGG: rsp:RSP_1650 hypothetical protein
YP_001044137.1	PFAM: Integrase, catalytic region; KEGG: rsp:RSP_1966 possible ISSod13, transposase
YP_001044138.1	KEGG: bur:Bcep18194_B1501 alpha/beta hydrolase
YP_001044139.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: rsp:RSP_0615 putative oxidoreductase
YP_001044140.1	TIGRFAM: pentatricopeptide repeat containing protein; KEGG: osa:4331201 Os02g0824000
YP_001044141.1	PFAM: phage integrase family protein; KEGG: sit:TM1040_3118 phage integrase
YP_001044142.1	PFAM: helix-turn-helix domain protein; plasmid stabilization system; KEGG: sme:SMc00089 hypothetical protein
YP_001044143.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rsp:RSP_0606 putative redox protein
YP_001044144.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_001044145.1	KEGG: sma:SAV1564 putative ABC transporter ATP-binding protein
YP_001044146.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpe:RPE_3323 periplasmic sensor signal transduction histidine kinase
YP_001044147.1	PFAM: transcriptional regulator domain protein; KEGG: rpe:RPE_3324 two component transcriptional regulator, winged helix family
YP_001044148.1	KEGG: rsp:RSP_0621 possible DNA helicase
YP_001044149.1	PFAM: protein of unknown function DUF329; KEGG: rsp:RSP_0623 hypothetical protein
YP_001044150.1	KEGG: rsp:RSP_0624 ribonuclease
YP_001044151.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: rsp:RSP_0625 putative Maf-like protein
YP_001044152.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_001044153.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rsp:RSP_0627 putative amidohydrolase
YP_001044154.1	KEGG: rsp:RSP_0628 hypothetical protein
YP_001044155.1	PFAM: protein of unknown function DUF1486; KEGG: rsp:RSP_0629 hypothetical protein
YP_001044156.1	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rsp:RSP_0630 hypothetical protein
YP_001044157.1	PFAM: Uncharacterised conserved protein UCP032146; KEGG: rsp:RSP_0631 hypothetical protein
YP_001044158.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_001044159.1	KEGG: rsp:RSP_6122 hypothetical protein
YP_001044160.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_001044161.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_0634 TRAP-T family transporter, DctM (12 TMs) subunit
YP_001044162.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rsp:RSP_0635 TRAP-T family transporter, DctQ (4 TMs) subunit
YP_001044163.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_0636 TRAP-T family transporter, DctP (periplasmic binding) subunit
YP_001044164.1	PFAM: protein of unknown function DUF861, cupin_3; KEGG: rsp:RSP_0637 hypothetical protein
YP_001044165.1	PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_0638 putative FAD dependent oxidoreductase protein
YP_001044166.1	PFAM: Hydantoinase B/oxoprolinase; KEGG: rsp:RSP_0639 putative N-methylhydantoinase B
YP_001044167.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: rsp:RSP_0640 putative N-methylhydantoinase A
YP_001044168.1	PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: rsp:RSP_0641 transcriptional regulator, XRE family
YP_001044169.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_0642 possible transporter, RhaT family, DMT superfamily
YP_001044170.1	PFAM: ATP-binding region, ATPase domain protein domain protein; MASE1 domain protein; histidine kinase, dimerisation/phosphoacceptor; KEGG: rsp:RSP_0643 periplasmic sensor signal transduction histidine kinase
YP_001044171.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0644 ABC transporter, inner membrane subunit
YP_001044172.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0645 ABC transporter, ATPase subunit
YP_001044173.1	KEGG: rsp:RSP_0646 ABC transporter, substrate-binding protein
YP_001044174.1	KEGG: rsp:RSP_0647 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1
YP_001044175.1	KEGG: rsp:RSP_0648 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase
YP_001044176.1	PFAM: hydroxyethylthiazole kinase; KEGG: rsp:RSP_0649 putative hydoxyethylthiazole kinase
YP_001044177.1	PFAM: Lytic transglycosylase, catalytic; KEGG: rsp:RSP_0650 probable transglycosylase
YP_001044178.1	PFAM: inositol monophosphatase; KEGG: rsp:RSP_0651 putative inositol monophosphatase protein
YP_001044179.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rsp:RSP_0652 UDP-glucose 4-epimerase
YP_001044180.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: rsp:RSP_0653 UDP-glucose 6-dehydrogenase
YP_001044181.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_0654 possible transporter, DMT superfamily
YP_001044182.1	PFAM: protein of unknown function DUF28; KEGG: rsp:RSP_0655 hypothetical protein
YP_001044183.1	PFAM: Citrate transporter; TrkA-C domain protein; KEGG: rsp:RSP_0656 probable sodium/sulphate symporter
YP_001044184.1	PFAM: metallophosphoesterase; KEGG: rsp:RSP_0657 hypothetical protein
YP_001044185.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; KEGG: rsp:RSP_0658 probable ATP-dependent helicase
YP_001044186.1	PFAM: metallophosphoesterase; KEGG: rsp:RSP_0659 putative metallo-phosphoesterase
YP_001044187.1	PFAM: LytTr DNA-binding region; KEGG: rsp:RSP_0660 hypothetical protein
YP_001044188.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_001044189.1	PFAM: Chorismate mutase; KEGG: rsp:RSP_0662 putative chorismate mutase
YP_001044190.1	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_001044191.1	KEGG: rsp:RSP_0664 hypothetical protein
YP_001044192.1	KEGG: rsp:RSP_0665 FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_001044193.1	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: ExsB family protein; PP-loop domain protein; KEGG: rsp:RSP_0666 probable cell cycle protein
YP_001044194.1	KEGG: rsp:RSP_0667 hypothetical protein
YP_001044195.1	TIGRFAM: OmpA domain protein; PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_0668 OmpA/MotB family protein
YP_001044196.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_001044197.1	KEGG: rsp:RSP_0670 possible TolA protein
YP_001044198.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rsp:RSP_0671 ExbD/TolR family protein
YP_001044199.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: rsp:RSP_0672 biopolymer transport protein, TolQ
YP_001044200.1	TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: rsp:RSP_0673 putative thioesterase
YP_001044201.1	KEGG: rsp:RSP_6124 hypothetical protein
YP_001044202.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_001044203.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: rsp:RSP_0675 putative TatD-related deoxyribonuclease
YP_001044204.1	KEGG: rsp:RSP_0676 PhnP-like protein
YP_001044205.1	PFAM: Auxin Efflux Carrier; KEGG: rsp:RSP_0677 putative malonate transporter, MdcF, AEC family
YP_001044206.1	KEGG: rsp:RSP_0678 hypothetical protein
YP_001044207.1	KEGG: rsp:RSP_6125 hypothetical protein
YP_001044208.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_001044209.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_001044210.1	KEGG: rsp:RSP_0681 hypothetical protein
YP_001044211.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_001044212.1	KEGG: rsp:RSP_0683 hypothetical protein
YP_001044213.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_0684 possible oxidoreductase; short-chain dehydrogenase/reductase SDR
YP_001044214.1	PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: rsp:RSP_0685 possible ribosomal RNA small subunit methyltransferase C RsmC
YP_001044215.1	PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: rsp:RSP_0686 ATP-dependent Clp protease adaptor protein ClpS
YP_001044216.1	PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rsp:RSP_0687 predicted hydrolase (haloacid dehalogenase (HAD) superfamily)
YP_001044217.1	PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: rsp:RSP_0688 probable penicillin-binding protein
YP_001044218.1	TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: rsp:RSP_0689 RdxS, cytochrome oxidase maturation protein, cbb3-type
YP_001044219.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rsp:RSP_0690 copper-translocating P-type ATPase, RdxI
YP_001044220.1	PFAM: FixH family protein; KEGG: rsp:RSP_0691 RdxH
YP_001044221.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rsp:RSP_0692 iron-sulfur cluster-binding protein
YP_001044222.1	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: rsp:RSP_0693 Cbb3-type cytochrome c oxidase CcoP subunit
YP_001044223.1	PFAM: Cbb3-type cytochrome oxidase component; KEGG: rsp:RSP_0694 Cbb3-type cytochrome c oxidase CcoQ subunit
YP_001044224.1	CcoO; FixO
YP_001044225.1	CcoN; FixN
YP_001044226.1	PFAM: UspA domain protein; KEGG: rsp:RSP_0697 universal stress protein (Usp)
YP_001044227.1	PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rsp:RSP_0698 Crp-Fnr regulatory protein (FnrL)
YP_001044228.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001044229.1	PFAM: glycosyl transferase, group 1; KEGG: rsp:RSP_0700 probable glycosyltransferase
YP_001044230.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_0701 ABC peptide transporter, fused ATPase domains
YP_001044231.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0702 ABC peptide transporter, inner membrane subunit
YP_001044232.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0703 ABC peptide transporter, inner membrane subunit
YP_001044233.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rsp:RSP_0704 ABC peptide transporter, substrate binding protein
YP_001044234.1	PFAM: cytochrome c, class I; KEGG: rsp:RSP_0705 cytochrome cy
YP_001044235.1	catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis
YP_001044236.1	KEGG: rsp:RSP_0707 hypothetical protein
YP_001044237.1	PFAM: NUDIX hydrolase; KEGG: rsp:RSP_0708 NUDIX hydrolase
YP_001044238.1	PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: rsp:RSP_0709 2',3'-cyclic-nucleotide 2'-phosphodiesterase
YP_001044239.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_001044240.1	PFAM: conserved hypothetical protein 103; KEGG: rsp:RSP_0711 hypothetical protein
YP_001044241.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_001044242.1	KEGG: rsp:RSP_0713 hypothetical protein
YP_001044243.1	PFAM: protein of unknown function DUF1013; KEGG: rsp:RSP_0714 hypothetical protein
YP_001044244.1	PFAM: ribonuclease T2; KEGG: rsp:RSP_0715 ribonuclease T2
YP_001044245.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsp:RSP_0716 NADPH/quinone reductase and related Zn-dependent oxidoreductase
YP_001044246.1	TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein; KEGG: rsp:RSP_0717 hypothetical protein
YP_001044247.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_001044248.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_001044249.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rsp:RSP_0720 CDP-alcohol phosphatidyltransferase
YP_001044250.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rsp:RSP_0721 phosphatidylethanolamine N-methyltransferase
YP_001044251.1	PFAM: regulatory protein, AsnC/Lrp family; regulatory protein, MarR; KEGG: rsp:RSP_0722 transcriptional regulator, AsnC family
YP_001044252.1	TIGRFAM: alanine dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; alanine dehydrogenase/PNT domain protein; KEGG: rsp:RSP_0723 alanine dehydrogenase
YP_001044253.1	homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_001044254.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rsp:RSP_0725 thioredoxin, thioldisulfide interchange protein
YP_001044255.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_001044256.1	KEGG: rsp:RSP_0727 hypothetical protein
YP_001044257.1	KEGG: rsp:RSP_0728 hypothetical protein
YP_001044258.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rsp:RSP_0729 Orn/DAP/Arg decarboxylase, family 2
YP_001044259.1	KEGG: rsp:RSP_0730 hypothetical protein
YP_001044260.1	TIGRFAM: MJ0042 family finger-like protein; KEGG: rsp:RSP_0732 hypothetical protein
YP_001044261.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0733 cell division ATP-binding protein FtsE
YP_001044262.1	PFAM: protein of unknown function DUF214; KEGG: rsp:RSP_0734 cell division protein FtsX
YP_001044263.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: rsp:RSP_0735 phospholipid/glycerol acyltransferase
YP_001044264.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_0736 MobC protein
YP_001044265.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: rsp:RSP_0737 molybdopterin guanine dinucleotide synthesis
YP_001044266.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: rsp:RSP_0738 molybdopterin-guanine dinucleotide biosynthesis protein A
YP_001044267.1	PFAM: AzlC family protein; KEGG: rsp:RSP_0739 branched chain amino acid efflux pump, large (AzlC) subunit
YP_001044268.1	PFAM: branched-chain amino acid transport; KEGG: rsp:RSP_6126 putative transmembrane protein
YP_001044269.1	KEGG: rsp:RSP_6127 hypothetical protein
YP_001044270.1	PFAM: aa3 type cytochrome c oxidase subunit IV; KEGG: rsp:RSP_6128 Aa3-type cytochrome c oxidase subunit IV
YP_001044271.1	PFAM: beta-lactamase domain protein; KEGG: rsp:RSP_0741 putative metallo-beta-lactamase family protein
YP_001044272.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rsp:RSP_0742 probable acyl-CoA dehydrogenase
YP_001044273.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: rsp:RSP_0743 putative translation factor
YP_001044274.1	KEGG: rsp:RSP_0744 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase
YP_001044275.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_001044276.1	TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_0747 short-chain dehydrogenase/reductase
YP_001044277.1	PFAM: protein of unknown function DUF465; KEGG: pde:Pden_2028 protein of unknown function DUF465
YP_001044278.1	PFAM: methyltransferase small; Methyltransferase type 11; KEGG: rsp:RSP_0748 N-6 adenine-specific DNA methylase
YP_001044279.1	KEGG: rsp:RSP_0749 hypothetical protein
YP_001044280.1	PFAM: Polyprenyl synthetase; KEGG: rsp:RSP_0750 geranylgeranyl pyrophosphate synthase/polyprenyl synthetase
YP_001044281.1	PFAM: protein of unknown function DUF1052; KEGG: rsp:RSP_0751 hypothetical protein
YP_001044282.1	KEGG: rsp:RSP_6129 hypothetical protein
YP_001044283.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_0752 acetyltransferase (GNAT) family
YP_001044284.1	PFAM: protein of unknown function DUF481; KEGG: rsp:RSP_0753 salt-stress induced outer membrane protein
YP_001044285.1	KEGG: rsp:RSP_0754 hypothetical protein
YP_001044286.1	TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: rsp:RSP_0755 putative N utilization substance protein B
YP_001044287.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_001044288.1	PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: rsp:RSP_0757 bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase
YP_001044290.1	KEGG: rsp:RSP_6130 hypothetical protein
YP_001044291.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_001044292.1	PFAM: polysaccharide export protein; KEGG: rsp:RSP_0759 putative capsule polysaccharide exporter
YP_001044293.1	PFAM: regulatory protein, MarR; KEGG: rsp:RSP_0760 transcriptional regulator, MarR family
YP_001044294.1	PFAM: protein of unknown function DUF339; KEGG: rsp:RSP_0761 hypothetical protein
YP_001044295.1	PFAM: helix-turn-helix domain protein; KEGG: rsp:RSP_0762 transcriptional regulator, XRE family
YP_001044296.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001044297.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rsp:RSP_0764 multi antimicrobial extrusion (MATE) family efflux pump NorM
YP_001044298.1	PFAM: Methyltransferase type 11; KEGG: rsp:RSP_0765 SAM-dependent methyltransferase
YP_001044299.1	PFAM: protein of unknown function DUF344; KEGG: rsp:RSP_0766 hypothetical protein
YP_001044300.1	PFAM: regulatory protein, LuxR; KEGG: rsp:RSP_0768 transcriptional regulator, LuxR family
YP_001044301.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rsp:RSP_0769 glutathione S-transferase
YP_001044302.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001044303.1	catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate
YP_001044304.1	PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: rsp:RSP_0774 RNA binding protein
YP_001044305.1	KEGG: rsp:RSP_0775 class I monoheme cytochrome c
YP_001044306.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0776 ABC lipoprotein efflux transporter, ATPase subunit, LolD
YP_001044307.1	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: rsp:RSP_0777 ABC lipoprotein efflux transporter, inner membrane subunit, LolE
YP_001044308.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_001044309.1	PFAM: protein of unknown function UPF0118; KEGG: rsp:RSP_0779 lipocalin-related protein and Bos/Can/Equ allergen
YP_001044310.1	PFAM: Chromosomal replication initiator, DnaA; KEGG: rsp:RSP_0780 hypothetical protein with ATP/GTP-binding site
YP_001044311.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_001044312.1	PFAM: Ppx/GppA phosphatase; KEGG: rsp:RSP_0782 Ppx/GppA phosphatase
YP_001044313.1	KEGG: rsp:RSP_0783 hypothetical protein
YP_001044314.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_0784 putative acetyltransferase, GNAT family
YP_001044315.1	PFAM: heat shock protein DnaJ domain protein; KEGG: rsp:RSP_0785 putative heat shock protein DnaJ
YP_001044316.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rsp:RSP_0786 possible endonuclease/exonuclease/phosphatase fa
YP_001044317.1	KEGG: rsp:RSP_0787 hypothetical protein
YP_001044318.1	KEGG: rsp:RSP_0788 hypothetical protein
YP_001044319.1	PFAM: aminotransferase, class I and II; KEGG: rsp:RSP_0789 aminotransferase, class-I
YP_001044320.1	KEGG: rsp:RSP_0790 pyrroloquinoline quinone biosynthesis protein PqqE; TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_001044321.1	PFAM: coenzyme PQQ synthesis D; KEGG: rsp:RSP_0791 putative pyrroloquinoline quinone synthesis protein D
YP_001044322.1	Required in the synthesis of PPQ, but its exact function is unknown
YP_001044323.1	possibly involved in transport of pyrroloquinoline quinone transport
YP_001044324.1	Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis; probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme
YP_001044325.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_0794 transcriptional regulator, LysR family
YP_001044326.1	PFAM: DGPFAETKE family protein; KEGG: rsp:RSP_0795 hypothetical protein
YP_001044327.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_001044328.1	KEGG: rsp:RSP_6229 hypothetical protein
YP_001044329.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_001044330.1	PFAM: protein of unknown function DUF1025; KEGG: rsp:RSP_0798 neutral zinc metallopeptidase
YP_001044331.1	PFAM: beta-lactamase domain protein; KEGG: rsp:RSP_0799 hypothetical protein
YP_001044332.1	PFAM: protein of unknown function DUF167; KEGG: rsp:RSP_0800 hypothetical protein
YP_001044333.1	PFAM: histone deacetylase superfamily; KEGG: rsp:RSP_0801 deacetylase / probable acetylpolyamine aminohydrolase
YP_001044334.1	PFAM: peptidase M19, renal dipeptidase; KEGG: rsp:RSP_0802 dipeptidase
YP_001044335.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0803 ABC dipeptide transporter, ATPase subunit DppF
YP_001044336.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0804 ABC dipeptide transporter, ATPase subunit DppD
YP_001044337.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0805 ABC dipeptide transporter, inner membrane subunit DppC
YP_001044338.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0806 ABC dipeptide transporter, inner membrane subunit DppB
YP_001044339.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rsp:RSP_0807 ABC dipeptide transporter, substrate-binding subunit DdpA
YP_001044340.1	PFAM: nitroreductase; KEGG: rsp:RSP_0809 hypothetical protein
YP_001044341.1	KEGG: rsp:RSP_0810 hypothetical protein
YP_001044342.1	PFAM: protein of unknown function DUF1467; KEGG: rsp:RSP_0811 hypothetical protein
YP_001044343.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rsp:RSP_0812 glyoxalase I (lactoylglutathione lyase)
YP_001044344.1	PFAM: response regulator receiver; KEGG: rsp:RSP_0813 response regulator receiver protein
YP_001044345.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_0814 acetyltransferase
YP_001044346.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_001044347.1	KEGG: rsp:RSP_0816 putative aminotransferase, class IV
YP_001044348.1	catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine
YP_001044349.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_001044350.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rsp:RSP_0819 DEAD/DEAH box helicase
YP_001044351.1	KEGG: rsp:RSP_6134 hypothetical protein
YP_001044352.1	PFAM: cytochrome B561; KEGG: rsp:RSP_0820 putative cytochrome b561
YP_001044353.1	PFAM: alpha/beta hydrolase fold; KEGG: rsp:RSP_0821 esterase/lipase/thioesterase
YP_001044354.1	KEGG: rsp:RSP_0822 hypothetical protein
YP_001044355.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_001044356.1	catalyzes the phosphorylation of NAD to NADP
YP_001044357.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_001044358.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rsp:RSP_0826 hypothetical protein
YP_001044359.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_001044360.1	PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_0828 major facilitator superfamily (MFS) transporter
YP_001044361.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: rsp:RSP_0829 lactate dehydrogenase
YP_001044362.1	PFAM: CBS domain containing protein; HPP family protein+B94; KEGG: rsp:RSP_0830 CBS-domain-containing membrane protein
YP_001044363.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_001044364.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_001044365.1	KEGG: rsp:RSP_0834 mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein
YP_001044366.1	PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rsp:RSP_0835 phosphomannomutase
YP_001044367.1	KEGG: rsp:RSP_6136 hypothetical protein
YP_001044368.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsp:RSP_0836 putative flavoprotein
YP_001044369.1	KEGG: rsp:RSP_0837 hypothetical protein
YP_001044370.1	PFAM: DNA polymerase III, delta; KEGG: rsp:RSP_0838 putative DNA polymerase III, delta subunit / DNA binding
YP_001044371.1	KEGG: rsp:RSP_0839 predicted secreted periplasmic protein
YP_001044372.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_001044373.1	KEGG: rsp:RSP_0841 hypothetical protein
YP_001044374.1	KEGG: rsp:RSP_0842 putative porin
YP_001044375.1	PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rsp:RSP_0843 conserved protein containing sulfotransfer domain
YP_001044376.1	PFAM: alanine racemase domain protein; KEGG: rsp:RSP_0844 hypothetical protein
YP_001044377.1	KEGG: rsp:RSP_0845 hypothetical protein
YP_001044378.1	PFAM: GTP cyclohydrolase II; KEGG: rsp:RSP_0846 GTP cyclohydrolase II
YP_001044379.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rsp:RSP_0847 two component transcriptional regulator, winged helix family
YP_001044380.1	TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rsp:RSP_0848 exodeoxyribonuclease III
YP_001044381.1	PFAM: regulatory protein, TetR; KEGG: rsp:RSP_6137 transcriptional regulator, TetR family
YP_001044382.1	KEGG: rsp:RSP_6138 hypothetical protein
YP_001044383.1	PFAM: Rubrerythrin; protein of unknown function DUF125, transmembrane; KEGG: rsp:RSP_0850 hypothetical protein
YP_001044384.1	PFAM: Auxin Efflux Carrier; KEGG: rsp:RSP_0851 putative transporter, AEC family
YP_001044385.1	PFAM: putative esterase; KEGG: rsp:RSP_0852 S-formylglutathione hydrolase
YP_001044386.1	PFAM: protein of unknown function DUF188; KEGG: rsp:RSP_0853 hypothetical protein
YP_001044387.1	PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: rsp:RSP_0854 predicted ornithine cyclodeaminase
YP_001044388.1	KEGG: rsp:RSP_0855 hypothetical protein
YP_001044389.1	KEGG: rsp:RSP_0856 S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase
YP_001044390.1	PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rsp:RSP_0857 S-adenosylmethionine-diacylgycerolhomoserine-N- methlytransferase
YP_001044391.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_0858 putative transporter, RhaT family, DMT superfamily
YP_001044392.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_001044393.1	KEGG: rsp:RSP_0860 hypothetical protein
YP_001044394.1	KEGG: rsp:RSP_0861 putative transmembrane hypothetical protein
YP_001044395.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_001044396.1	KEGG: rsp:RSP_6139 hypothetical protein
YP_001044397.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_001044398.1	PFAM: SOUL heme-binding protein; KEGG: rsp:RSP_0864 putative heme-binding hypothetical protein
YP_001044399.1	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: rsp:RSP_0865 hypothetical protein
YP_001044400.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_001044401.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_001044402.1	KEGG: rsp:RSP_0868 putative transcriptional regulator
YP_001044403.1	PFAM: response regulator receiver; KEGG: rsp:RSP_0869 response regulator receive protein
YP_001044404.1	KEGG: rsp:RSP_0870 hypothetical protein
YP_001044405.1	PFAM: aminotransferase, class I and II; KEGG: rsp:RSP_0871 putative aminotransferase
YP_001044406.1	KEGG: rsp:RSP_0872 formylmethionine deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_001044407.1	KEGG: rsp:RSP_0873 N-formylmethionyl tRNA deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_001044408.1	TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; KEGG: rsp:RSP_0874 formylmethionine deformylase
YP_001044409.1	TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: rsp:RSP_0875 methionyl-tRNA formyl transferase
YP_001044410.1	TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: rsp:RSP_0876 chromosome segregation protein SMC2
YP_001044411.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_0878 putative acetyltransferase protein
YP_001044412.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_0877 putative transporter, RhaT family, DMT superfamily
YP_001044413.1	PFAM: protein of unknown function DUF752; KEGG: rsp:RSP_0879 hypothetical protein
YP_001044414.1	PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_0880 putative oxidoreductase, possibly D-amino acid oxidase protein
YP_001044415.1	PFAM: Lytic transglycosylase, catalytic; Tetratricopeptide TPR_4; KEGG: rsp:RSP_0881 putative soluble lytic transglycosylase
YP_001044416.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_001044417.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_001044418.1	PFAM: Rhodanese domain protein; KEGG: rsp:RSP_0885 thiosulfate sulfurtransferase, rhodanese-like
YP_001044419.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_001044420.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rsp:RSP_0888 ammonium transporter, AmtB
YP_001044421.1	PFAM: nitrogen regulatory protein P-II; KEGG: rsp:RSP_0889 nitrogen regulatory protein P-II
YP_001044422.1	KEGG: rsp:RSP_0887 glycosyl transferase, family 51; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase
YP_001044423.1	PFAM: toluene tolerance family protein; KEGG: rsp:RSP_0890 possible protein YrbC precursor
YP_001044424.1	PFAM: VacJ family lipoprotein; KEGG: rsp:RSP_0891 putative lipoprotein
YP_001044425.1	KEGG: rsp:RSP_0892 ABC protein toxin exporter, fused ATPase and inner membrane domain; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_001044426.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: rsp:RSP_0893 RTX secretion protein D, HlyD family
YP_001044427.1	PFAM: Endoribonuclease L-PSP; KEGG: rsp:RSP_0894 hypothetical protein
YP_001044428.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rsp:RSP_0895 phosphodiesterase-like
YP_001044429.1	PFAM: protein of unknown function DUF482; KEGG: rsp:RSP_0896 hypothetical protein
YP_001044430.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rsp:RSP_0897 glutathione S-transferase
YP_001044431.1	PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rsp:RSP_0898 pterin dehydratase
YP_001044432.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rsp:RSP_0899 AhpC/TSA family protein
YP_001044433.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsp:RSP_0900 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_001044434.1	TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: rsp:RSP_0901 N-6 adenine-specific DNA methylase
YP_001044435.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rsp:RSP_0902 hydrolase, haloacid dehalogenase-like hydrolase
YP_001044436.1	KEGG: rsp:RSP_0903 catalase
YP_001044437.1	PFAM: periplasmic solute binding protein; KEGG: rsp:RSP_0904 ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein SitA
YP_001044438.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0905 ABC Mn+2/Fe+2 transporter, ATPase subunit SitB
YP_001044439.1	PFAM: transport system permease protein; ABC-3 protein; KEGG: rsp:RSP_0906 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC
YP_001044440.1	PFAM: ABC-3 protein; KEGG: rsp:RSP_0908 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitD
YP_001044441.1	PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rsp:RSP_0907 two component transcriptional regulator, LuxR family
YP_001044442.1	KEGG: rsp:RSP_0909 multisensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_001044443.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_0910 TRAP-T family transporter, C4-dicarboxylate-binding protein DctP
YP_001044444.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rsp:RSP_0911 TRAP-T family C4-dicarboxylate transporter, DctQ (4TMs) subunit
YP_001044445.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_0912 TRAP-T family C4-dicarboxylate transporter, DctM (12TMs) subunit
YP_001044446.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rsp:RSP_0913 enoyl-CoA hydratase/isomerase
YP_001044447.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_0914 short-chain dehydrogenase/reductase SDR
YP_001044448.1	KEGG: rsp:RSP_0915 hypothetical protein
YP_001044449.1	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rsp:RSP_0916 putative PmbA/TldD protein invoved in modulation of DNA gyrase
YP_001044450.1	PFAM: inositol monophosphatase; KEGG: rsp:RSP_0917 inositol monophosphatase
YP_001044451.1	KEGG: rsp:RSP_0918 hypothetical protein
YP_001044452.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_0919 short-chain dehydrogenase/reductase SDR
YP_001044453.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: rsp:RSP_0920 biopolymer transport protein, ExbB
YP_001044454.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rsp:RSP_0921 biopolymer transport protein, ExbD
YP_001044455.1	TIGRFAM: TonB family protein; KEGG: rsp:RSP_0922 putative TonB protein
YP_001044456.1	KEGG: rsp:RSP_0923 methionine aminopeptidase, subfamily 1; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24
YP_001044457.1	PFAM: molybdopterin binding domain; KEGG: rsp:RSP_0924 predicted nucleotide-utilizing enzyme/competence-damage associated protein
YP_001044458.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_0925 putative acetyl transferase
YP_001044459.1	PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_0926 OmpA/MotB family protein
YP_001044460.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_0927 transcriptional regulator, LyrR family
YP_001044461.1	KEGG: rsp:RSP_0928 hypothetical protein
YP_001044462.1	TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: rsp:RSP_0929 acetyl-CoA carboxylase carboxyl transferase, beta subunit
YP_001044463.1	TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rsp:RSP_0930 folylpolyglutamate synthetase
YP_001044464.1	hydrolyzes diadenosine polyphosphate
YP_001044465.1	KEGG: rsp:RSP_0932 peptidase family S41; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41
YP_001044466.1	PFAM: peptidase M23B; KEGG: rsp:RSP_0933 hypothetical protein
YP_001044467.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_001044468.1	KEGG: rsp:RSP_0935 MiaB-like radical SAM protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB
YP_001044469.1	PFAM: diaminopimelate epimerase; KEGG: rsp:RSP_0936 diaminopimelate epimerase
YP_001044470.1	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: rsp:RSP_0937 alpha amylase, catalytic subdomain
YP_001044471.1	KEGG: rsp:RSP_0938 hypothetical protein
YP_001044472.1	PFAM: protein of unknown function DUF72; KEGG: rsp:RSP_0939 hypothetical protein
YP_001044473.1	KEGG: rsp:RSP_0940 ABC transporter, periplasmic substrate binding protein
YP_001044474.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0941 ABC transporter, ATPase subunit
YP_001044475.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0942 ABC transporter, inner membrane subunit
YP_001044476.1	PFAM: aminotransferase class-III; KEGG: rsp:RSP_0943 probable adenosylmethionine-8-amino-7-oxononanoate aminotransferase
YP_001044477.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_001044478.1	PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: rsp:RSP_0945 major facilitator superfamily (MFS) transporter
YP_001044479.1	KEGG: rsp:RSP_0946 putative DNA topoisomerase I protein
YP_001044480.1	KEGG: rsp:RSP_0947 hypothetical protein
YP_001044481.1	KEGG: rsp:RSP_6141 hypothetical outer membrane protein
YP_001044482.1	KEGG: rsp:RSP_0948 probable OtsA trehalose-6-phosphate synthase; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase, family 20
YP_001044483.1	KEGG: rsp:RSP_0949 putative trehalose-6-phosphate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase
YP_001044484.1	PFAM: peptidase M20; KEGG: rsp:RSP_0950 arginine utilization protein RocB
YP_001044485.1	KEGG: rsp:RSP_0951 hypothetical protein
YP_001044486.1	PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rsp:RSP_0952 transglutaminase-like protein
YP_001044487.1	PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rsp:RSP_0953 hypothetical protein
YP_001044488.1	PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rsp:RSP_0954 transglutaminase-like domain
YP_001044489.1	PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: rsp:RSP_0955 5'-nucleotidase
YP_001044490.1	PFAM: protein of unknown function DUF952; KEGG: rsp:RSP_0956 hypothetical protein
YP_001044491.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_001044492.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: rsp:RSP_0958 RAM domain protein
YP_001044493.1	SMART: AAA ATPase; KEGG: rsp:RSP_0959 ATPase
YP_001044494.1	TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsp:RSP_0960 alcohol dehydrogenase
YP_001044495.1	KEGG: rsp:RSP_0961 similiar to methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein
YP_001044496.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: rsp:RSP_0962 dihydrolipoamide dehydrogenase
YP_001044497.1	KEGG: rsp:RSP_0963 inner membrane protein
YP_001044498.1	TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: rsp:RSP_0964 dihydrolipoamide acetyltransferase
YP_001044499.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_001044500.1	TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: rsp:RSP_0966 succinyl-CoA synthetase, alpha subunit
YP_001044501.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_001044502.1	Catalyzes the reversible oxidation of malate to oxaloacetate
YP_001044503.1	PFAM: protein of unknown function DUF81; KEGG: rsp:RSP_0969 putative integral membrane protein
YP_001044504.1	PFAM: HpcH/HpaI aldolase; KEGG: rsp:RSP_0970 putative citrate lyase beta chain
YP_001044505.1	PFAM: NnrUfamily protein; KEGG: rsp:RSP_0971 hypothetical protein
YP_001044506.1	KEGG: rsp:RSP_0972 hypothetical protein
YP_001044507.1	PFAM: MaoC domain protein dehydratase; KEGG: rsp:RSP_0973 MaoC family protein
YP_001044508.1	PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: rsp:RSP_0974 succinate dehydrogenase cytochrome b-556 subunit
YP_001044509.1	KEGG: rsp:RSP_0975 putative succinate dehydrogenase, hydrophobic membrane anchor protein
YP_001044510.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_001044511.1	KEGG: rsp:RSP_0977 hypothetical protein
YP_001044512.1	KEGG: rsp:RSP_0978 hypothetical protein
YP_001044513.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_001044514.1	KEGG: rsp:RSP_6142 hypothetical protein
YP_001044515.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_0981 transcriptional regulator, GntR family
YP_001044516.1	PFAM: protein of unknown function DUF45; KEGG: rsp:RSP_0982 zinc metallopeptidase-like protein
YP_001044517.1	KEGG: rsp:RSP_0983 hypothetical protein
YP_001044518.1	PFAM: 17 kDa surface antigen; KEGG: rsp:RSP_6143 hypothetical protein
YP_001044519.1	KEGG: rsp:RSP_0985 adenine deaminase; TIGRFAM: adenine deaminase; PFAM: amidohydrolase
YP_001044520.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_0987 putative transporter, RarD family, DMT superfamily
YP_001044521.1	KEGG: rsp:RSP_0986 hypothetical protein
YP_001044522.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0988 ABC sugar transporter, ATPase subunit
YP_001044523.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_0989 ABC sugar transporter, inner membrane subunit
YP_001044524.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rsp:RSP_0990 ABC sugar transporter, periplasmic sugar binding subunit
YP_001044525.1	PFAM: ROK family protein; KEGG: rsp:RSP_0991 putative transcriptional regulator, ROK family
YP_001044526.1	subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+
YP_001044527.1	subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_001044528.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone
YP_001044529.1	subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport
YP_001044530.1	PFAM: multiple resistance and pH regulation protein F; KEGG: rsp:RSP_0996 pH adaption potassium efflux system, PhaF subunit
YP_001044531.1	TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: rsp:RSP_0997 pH adaption potassium efflux system, PhaG subunit
YP_001044532.1	PFAM: Citrate transporter; KEGG: rsp:RSP_0998 Na+/H+ antiporter, NhaD
YP_001044533.1	PFAM: protein of unknown function DUF179; KEGG: rsp:RSP_0999 hypothetical protein
YP_001044534.1	KEGG: rsp:RSP_1000 hypothetical protein
YP_001044535.1	TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rsp:RSP_1001 putative DNA polymerase bacteriophage-type
YP_001044536.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_001044537.1	TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: rsp:RSP_1003 dihydroorotase and related cyclic amidohydrolase
YP_001044538.1	PFAM: protein of unknown function DUF205; KEGG: rsp:RSP_1004 hypothetical protein
YP_001044539.1	TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase, GCS2; KEGG: rsp:RSP_1005 putative glutathione synthetase
YP_001044540.1	KEGG: rsp:RSP_1006 hypothetical protein
YP_001044541.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_001044542.1	UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin
YP_001044543.1	PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_1009 possible outer membrane protein, OmpA family / putative chemotaxis MotB protein
YP_001044544.1	KEGG: rsp:RSP_1011 hypothetical protein
YP_001044545.1	KEGG: rsp:RSP_1010 possible esterase/lipase/thioesterase
YP_001044546.1	KEGG: rsp:RSP_1012 succinate-semialdehyde dehdyrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase
YP_001044547.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rsp:RSP_1013 possible hemolysin
YP_001044548.1	PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rsp:RSP_1014 sigma24
YP_001044549.1	PFAM: von Willebrand factor, type A; KEGG: rsp:RSP_1015 putative membrane protein with von Willebrand (VWA) domain
YP_001044550.1	PFAM: heat shock protein Hsp20; KEGG: rsp:RSP_1016 small heat shock protein
YP_001044551.1	PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: rsp:RSP_1017 hypothetical protein
YP_001044552.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: rsp:RSP_1018 glycolate oxidase iron-sulfur subunit
YP_001044553.1	PFAM: FAD linked oxidase domain protein; KEGG: rsp:RSP_1019 putative glycolate oxidase subunit protein
YP_001044554.1	PFAM: FAD linked oxidase domain protein; KEGG: rsp:RSP_1020 putative glycolate oxidase subunit protein
YP_001044555.1	PFAM: protein of unknown function DUF599; KEGG: rsp:RSP_1021 hypothetical protein
YP_001044556.1	KEGG: rsp:RSP_6144 conserved hypothetical protein (possible transmembrane)
YP_001044557.1	TIGRFAM: conserved hypothetical membrane protein; KEGG: rsp:RSP_1022 conserved hypothetical protein (possibly transmembrane)
YP_001044558.1	KEGG: rsp:RSP_1023 hypothetical protein
YP_001044559.1	PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: rsp:RSP_1024 putative MoxR family protein
YP_001044560.1	PFAM: protein of unknown function DUF1285; KEGG: rsp:RSP_1025 hypothetical protein
YP_001044561.1	KEGG: rsp:RSP_1026 hypothetical protein
YP_001044562.1	KEGG: rsp:RSP_1027 hypothetical protein
YP_001044563.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_001044564.1	PFAM: histidine triad (HIT) protein; KEGG: rsp:RSP_1029 possible histidine triad (HIT) protein
YP_001044565.1	PFAM: PfkB domain protein; KEGG: rsp:RSP_1030 putative PfkB family carbohydrate kinase
YP_001044566.1	KEGG: rsp:RSP_1031 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop
YP_001044567.1	TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein, AraC type; methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: rsp:RSP_1032 possible O6-methylguanine-DNA methyltransferase
YP_001044568.1	PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_1033 OmpA family protein
YP_001044569.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: rsp:RSP_1034 pyruvate dehydrogenase complex repressor
YP_001044570.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel.
YP_001044571.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B' is part of the membrane proton channel.
YP_001044572.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_001044573.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_001044574.1	KEGG: rsp:RSP_1039 FoF1 ATP synthase, subunit I
YP_001044575.1	PFAM: regulatory protein, ArsR; KEGG: rsp:RSP_1040 transcriptional regulator, ArsR family
YP_001044576.1	catalyzes the formation of malonyl-CoA from malonate and CoA
YP_001044577.1	KEGG: rsp:RSP_1042 chromosome partitioning protein
YP_001044578.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_001044579.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_001044580.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_001044581.1	KEGG: rsp:RSP_1046 hypothetical protein
YP_001044582.1	Essential for efficient processing of 16S rRNA
YP_001044583.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_001044584.1	catalyzes the interconversion of chorismate to prephenate
YP_001044585.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_1050 acetyltransferase (GNAT) family
YP_001044586.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_1051 hypothetical protein
YP_001044587.1	KEGG: rsp:RSP_1052 possible acetyltransferase
YP_001044588.1	KEGG: rsp:RSP_1053 signal recognition particle protein ffh; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase
YP_001044589.1	KEGG: rsp:RSP_6230 hypothetical protein
YP_001044590.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_1055 transcriptional regulator, LysR family
YP_001044591.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_1056 periplasmic sensor signal transduction histidine kinase
YP_001044592.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rsp:RSP_1057 putative mercuric reductase protein
YP_001044593.1	KEGG: rsp:RSP_1058 hypothetical transmemebrane protein
YP_001044594.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_001044595.1	TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: rsp:RSP_1060 ribonuclease P protein component
YP_001044596.1	PFAM: protein of unknown function DUF37; KEGG: rsp:RSP_1061 hypothetical protein
YP_001044597.1	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs
YP_001044598.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rsp:RSP_1063 putative cyclic-diGMP cyclase/phophodiesterase
YP_001044599.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_001044600.1	PFAM: MOSC domain containing protein; KEGG: rsp:RSP_1065 hypothetical protein
YP_001044601.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_001044602.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_1067 short-chain alcohol dehydrogenase
YP_001044603.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_001044604.1	KEGG: rsp:RSP_1069 hypothetical protein
YP_001044605.1	PFAM: Phosphoglycerate mutase; KEGG: rsp:RSP_1070 hypothetical protein
YP_001044606.1	PFAM: molybdopterin biosynthesis MoaE; KEGG: rsp:RSP_1071 molybdopterin converting factor subunit 2
YP_001044607.1	TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: rsp:RSP_1072 putative molybdopterin MPT converting factor, subunit 1 protein
YP_001044608.1	TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rsp:RSP_1073 phosphatidylglycerol phosphate synthase
YP_001044609.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_001044610.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_1075 short chain dehydrogenase
YP_001044611.1	PFAM: peptidase S49; KEGG: rsp:RSP_1076 peptidase family S49
YP_001044612.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_1077 transcriptional regulator, LysR family
YP_001044613.1	catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor
YP_001044614.1	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rsp:RSP_1079 NAD dependent formate dehydrogenase, beta subunit (51 kDa)
YP_001044615.1	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rsp:RSP_1080 NAD-dependent formate dehydrogenase, alpha subunit
YP_001044616.1	involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth
YP_001044617.1	KEGG: rsp:RSP_1082 NAD-dependent formate dehydrogenase, delta subunit
YP_001044618.1	KEGG: rsp:RSP_6146 hypothetical protein
YP_001044619.1	PFAM: glycosyl transferase, group 1; KEGG: rsp:RSP_1084 putative glycosyl transferase, group 1 family protein
YP_001044620.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rsp:RSP_1083 two component transcriptional regulator, winged helix family
YP_001044622.1	SMART: WGR domain protein; KEGG: rsp:RSP_1085 hypothetical protein
YP_001044623.1	PFAM: alanine dehydrogenase/PNT domain protein; KEGG: rsp:RSP_1086 saccharopine dehydrogenase (NAD+, L-lysine forming)
YP_001044624.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_1087 short-chain dehydrogenase/reductase family member
YP_001044625.1	KEGG: rsp:RSP_1088 hypothetical protein
YP_001044626.1	PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_1089 sugar/cation symporter, GPH family
YP_001044627.1	PFAM: protein of unknown function DUF1365; KEGG: rsp:RSP_1090 putative cyclopropane/cyclopropene fatty acid synthesis protein
YP_001044628.1	PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rsp:RSP_1091 putative cyclopropane/cyclopropene fatty acid synthesis protein, flavin amine oxidase
YP_001044629.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_001044630.1	TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: rsp:RSP_1093 anti-sigma factor ChrR
YP_001044631.1	PFAM: protein of unknown function DUF195; KEGG: rsp:RSP_1094 hypothetical protein
YP_001044632.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_001044633.1	PFAM: peptidase M16 domain protein; KEGG: rsp:RSP_1096 putative zinc protease
YP_001044634.1	PFAM: peptidase M16 domain protein; KEGG: rsp:RSP_1097 putative zinc protease
YP_001044635.1	KEGG: rsp:RSP_1098 hypothetical protein
YP_001044636.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_001044637.1	involved in de novo purine biosynthesis
YP_001044638.1	PFAM: Heparinase II/III family protein; KEGG: rsp:RSP_1101 hypothetical protein
YP_001044639.1	PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; methyltransferase small; KEGG: rsp:RSP_6147 rRNA methyltransferase RsmB-like
YP_001044640.1	PFAM: protein of unknown function DUF1674; KEGG: rsp:RSP_1104 hypothetical protein
YP_001044641.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_001044642.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_001044643.1	KEGG: rsp:RSP_1107 hypothetical protein
YP_001044644.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_001044645.1	TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rsp:RSP_1109 cysteine synthase
YP_001044646.1	PFAM: protein of unknown function DUF1643; KEGG: rsp:RSP_1110 hypothetical protein
YP_001044647.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_001044648.1	KEGG: rsp:RSP_1112 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein
YP_001044649.1	PFAM: Hemolysin-type calcium-binding region; KEGG: rsp:RSP_1113 hemolysin-type calcium-binding region; RTX toxin
YP_001044650.1	KEGG: rsp:RSP_1114 hemolysin-type calcium-binding toxin
YP_001044651.1	KEGG: rsp:RSP_1115 hypothetical protein
YP_001044652.1	PFAM: glycosyl transferase, group 1; KEGG: rsp:RSP_1116 glycosyltransferase
YP_001044653.1	KEGG: rsp:RSP_1117 hypothetical protein
YP_001044654.1	PFAM: glycosyl transferase, group 1; KEGG: rsp:RSP_1118 group 1 glycosyltransferase
YP_001044655.1	KEGG: rsp:RSP_1119 ABC protein exporter, fused ATPase and inner membrane subunits; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_001044656.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: rsp:RSP_1120 protein secretion protein, HlyD family, membrane fusion protein
YP_001044657.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: rsp:RSP_1121 acetyl transferase, isoleucine patch superfamily
YP_001044658.1	KEGG: rsp:RSP_1122 hypothetical protein
YP_001044659.1	KEGG: rsp:RSP_1123 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein
YP_001044660.1	TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rsp:RSP_1125 membrane bound lytic murein transglycosylase B
YP_001044661.1	KEGG: rsp:RSP_1126 exoribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein
YP_001044662.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_1127 acetyltransferase, GNAT family
YP_001044663.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_001044664.1	KEGG: rsp:RSP_1129 hypothetical protein
YP_001044665.1	KEGG: rsp:RSP_1130 hypothetical membrane protein
YP_001044666.1	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway
YP_001044667.1	PFAM: conserved hypothetical protein 730; KEGG: rsp:RSP_1132 hypothetical protein
YP_001044668.1	KEGG: rsp:RSP_1133 hypothetical protein
YP_001044669.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_001044670.1	PFAM: Polyprenyl synthetase; KEGG: rsp:RSP_1135 geranylgeranyl pyrophosphate synthetase
YP_001044671.1	TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: rsp:RSP_1136 exonuclease VII small subunit
YP_001044672.1	PFAM: histone deacetylase superfamily; KEGG: rsp:RSP_1137 histone deacetylase family protein
YP_001044673.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rsp:RSP_1138 two component transcriptional regulator, winged helix family
YP_001044674.1	PFAM: regulatory protein, MarR; KEGG: rsp:RSP_1139 transcriptional regulator, MarR family
YP_001044675.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_001044676.1	KEGG: rsp:RSP_1141 hypothetical protein
YP_001044677.1	KEGG: rsp:RSP_1142 hypothetical membrane protein
YP_001044678.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: rsp:RSP_1143 4Fe-4S ferredoxin, iron-sulfur cluster binding protein
YP_001044679.1	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rsp:RSP_1144 glutathione S-transferase
YP_001044680.1	TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase, family 51; KEGG: rsp:RSP_1145 peptidoglycan transglycosylase
YP_001044681.1	PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rsp:RSP_1146 glutamine-pyruvate aminotransferase
YP_001044682.1	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: rsp:RSP_1147 hypothetical protein
YP_001044683.1	KEGG: rsp:RSP_1148 hypothetical protein
YP_001044684.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_001044685.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_001044686.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: rsp:RSP_1151 NADH-ubiquinone oxidoreductase
YP_001044687.1	PFAM: 3'-5' exonuclease; KEGG: rsp:RSP_1152 ribonuclease D
YP_001044688.1	KEGG: rsp:RSP_1153 sugar phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS)
YP_001044689.1	PFAM: protein of unknown function DUF1239; KEGG: rsp:RSP_1154 hypothetical protein
YP_001044690.1	PFAM: OstA family protein; KEGG: rsp:RSP_1155 OstA-like protein
YP_001044691.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_1156 ABC transporter, ATPase subunit
YP_001044692.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: rsp:RSP_1157 ribosomal subunit interface protein Y
YP_001044693.1	TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: rsp:RSP_1158 PTS IIA-like nitrogen-regulatory protein PtsN
YP_001044694.1	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: rsp:RSP_1159 UDP-glucose pyrophosphate
YP_001044695.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_001044696.1	TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: rsp:RSP_1161 3'-phosphadenosine 5'-phosphosulfate 3'-phosphatase
YP_001044697.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_001044698.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_001044699.1	PFAM: protein of unknown function DUF448; KEGG: rsp:RSP_1164 hypothetical protein
YP_001044700.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_001044702.1	TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: rsp:RSP_1166 NTP pyrophosphohydrolase
YP_001044703.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_001044704.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rsp:RSP_1168 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_001044705.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_001044706.1	PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_1170 OmpA family protein
YP_001044707.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_001044708.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_001044709.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_001044710.1	KEGG: rsp:RSP_1174 prolyl aminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold
YP_001044711.1	Involved in ubiquinone biosynthesis
YP_001044712.1	catalyzes the interconversion of D-xylose to D-xylulose
YP_001044713.1	TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: rsp:RSP_1177 xylulose kinase
YP_001044714.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_1178 ABC sugar (xylose) transporter, ATPase subunit
YP_001044715.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_1179 ABC sugar (xylose) transporter, inner membrane subunit
YP_001044716.1	TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; KEGG: rsp:RSP_1180 ABC sugar (xylose) transporter, periplasmic binding protein
YP_001044717.1	PFAM: ROK family protein; KEGG: rsp:RSP_1181 xylose operon repressor
YP_001044718.1	PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rsp:RSP_1182 putative outer membrane protein
YP_001044719.1	PFAM: protein of unknown function DUF490; KEGG: rsp:RSP_1183 hypothetical protein
YP_001044720.1	TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: rsp:RSP_1184 ribonuclease BN
YP_001044722.1	KEGG: rsp:RSP_1186 hypothetical protein
YP_001044723.1	PFAM: protein of unknown function DUF940, membrane lipoprotein putative; KEGG: rsp:RSP_1187 hypothetical protein
YP_001044724.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rsp:RSP_1188 nucleotide sugar epimerase/dehydratase
YP_001044725.1	PFAM: sugar transferase; KEGG: rsp:RSP_1189 sugar transferase
YP_001044726.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: rsp:RSP_1190 hypothetical protein
YP_001044727.1	PFAM: regulatory protein, MarR; KEGG: rsp:RSP_1191 transcriptional regulator, MarR family
YP_001044728.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sil:SPO0069 hydrolase, carbon-nitrogen family
YP_001044729.1	TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; glutaredoxin 2; KEGG: rsp:RSP_1194 glutaredoxin
YP_001044730.1	KEGG: rsp:RSP_1195 competence protein F
YP_001044731.1	KEGG: rsp:RSP_1196 SAM-dependent methyltransferase
YP_001044732.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_001044734.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rsp:RSP_1199 secreted conserved hypothetical protein
YP_001044735.1	PFAM: Allergen V5/Tpx-1 family protein; KEGG: rsp:RSP_1200 hypothetical protein
YP_001044736.1	KEGG: rsp:RSP_1201 hypothetical protein
YP_001044737.1	KEGG: rsp:RSP_1202 putative RNA SAM-dependent methyltransferase, TrmA family
YP_001044738.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_1203 ABC multidrug efflux pump, fused ATPase and inner membrane subunits
YP_001044739.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_1204 ABC multidrug efflux pump, fused ATPase and inner membrane subunits
YP_001044740.1	PFAM: Polynucleotide adenylyltransferase region; KEGG: rsp:RSP_1205 poly A polymerase family protein
YP_001044741.1	PFAM: NUDIX hydrolase; KEGG: rsp:RSP_1206 putative phosphohydrolase (MutT/NUDIX family protein)
YP_001044742.1	PFAM: Hsp33 protein; KEGG: rsp:RSP_1207 putative HSP33 protein
YP_001044743.1	PFAM: NUDIX hydrolase; KEGG: rsp:RSP_1208 NUDIX hydrolase
YP_001044744.1	PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rsp:RSP_1210 response regulator receiver protein
YP_001044745.1	PFAM: Hpt domain protein; KEGG: rsp:RSP_6148 putative HPT, histidine phosphotransfer domain
YP_001044746.1	catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic
YP_001044747.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_001044748.1	PFAM: protein of unknown function DUF533; KEGG: rsp:RSP_1213 hypothetical protein
YP_001044749.1	KEGG: rsp:RSP_1214 putative branched-chain amino acid aminotransferase
YP_001044750.1	PFAM: aminotransferase, class IV; KEGG: rsp:RSP_1215 putative IlvE, branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
YP_001044751.1	PFAM: PfkB domain protein; KEGG: rsp:RSP_1216 putative RbsK, carbohydrate kinase, ribokinase family
YP_001044752.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_001044753.1	This protein performs the mismatch recognition step during the DNA repair process
YP_001044754.1	PFAM: GrpE protein; KEGG: rsp:RSP_1219 putative chaperone protein GrpE (heat shock protein)
YP_001044755.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_001044756.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_001044757.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_001044758.1	PFAM: Endoribonuclease L-PSP; KEGG: rsp:RSP_1223 putative translation initiation inhibitor, YjgF family / putative endoribonuclease L-PSP
YP_001044759.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001044760.1	PFAM: protein of unknown function DUF454; KEGG: rsp:RSP_1226 hypothetical protein
YP_001044761.1	TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: rsp:RSP_1225 ParB-like partition protein
YP_001044762.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rsp:RSP_1227 putative chromosome partitioning protein, ParA
YP_001044763.1	TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: rsp:RSP_1228 putative GidB, glucose inhibited division protein
YP_001044764.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_001044765.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_001044766.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_001044767.1	PFAM: conserved hypothetical protein 701; KEGG: rsp:RSP_1232 putative integral membrane protein
YP_001044768.1	PFAM: Maf family protein; KEGG: rsp:RSP_1233 putative Maf/YceF/YhdE family protein
YP_001044769.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_001044770.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_001044771.1	KEGG: rsp:RSP_1236 putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease
YP_001044772.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_001044773.1	PFAM: FxsA cytoplasmic membrane protein; KEGG: rsp:RSP_1238 putative FxsA cytoplasmic membrane protein
YP_001044774.1	PFAM: import inner membrane translocase, subunit Tim44; KEGG: rsp:RSP_1239 hypothetical protein
YP_001044775.1	PFAM: MltA domain protein; 3D domain protein; KEGG: rsp:RSP_1240 putative membrane-bound lytic murein transglycosylase A transmembrane protein
YP_001044776.1	PFAM: Smr protein/MutS2; KEGG: rsp:RSP_1241 putative Smr protein/MutS2
YP_001044777.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rsp:RSP_1242 hypothetical protein
YP_001044778.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rsp:RSP_1243 transcriptional regulator, LacI family
YP_001044779.1	PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: rsp:RSP_1244 putative IolE, sugar phosphate isomerase/epimerase
YP_001044780.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rsp:RSP_1245 predicted oxidoreductase, Gfo/Idh/MocA family
YP_001044781.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_1247 ABC sugar transporter, ATPase subunit
YP_001044782.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_6150 ABC sugar (ribose) transporter, inner membrane subunit
YP_001044783.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rsp:RSP_1249 ABC ribose transporter, periplasmic solute-binding protein
YP_001044784.1	KEGG: rsp:RSP_6151 hypothetical protein
YP_001044786.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rsp:RSP_1252 2-nitropropane dioxygenase-like protein
YP_001044787.1	KEGG: rsp:RSP_1253 hypothetical protein
YP_001044788.1	TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: rsp:RSP_1254 putative acetate kinase (acetokinase
YP_001044789.1	PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: rsp:RSP_1255 phosphate acetyltransferase
YP_001044790.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_001044791.1	PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rsp:RSP_1257 putative polyhydroxyalkanoic synthase, PHA synthase
YP_001044792.1	PFAM: alpha/beta hydrolase fold; KEGG: rsp:RSP_1258 putative hydrolase
YP_001044793.1	KEGG: rsp:RSP_1259 hypothetical protein
YP_001044794.1	KEGG: rsp:RSP_1260 hypothetical protein
YP_001044795.1	PFAM: BLUF domain protein; KEGG: rsp:RSP_1261 blue-light receptor of the BLUF-family
YP_001044796.1	PFAM: response regulator receiver; KEGG: rsp:RSP_1262 response regulator receiver protein
YP_001044797.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_001044798.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rsp:RSP_1266 potassium-transporting P-type ATPase, B chain, KdpB
YP_001044799.1	KEGG: rsp:RSP_1267 potassium-transporting P-type ATPase C chain, KdpC; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K+ transporting ATPase, KdpC subunit
YP_001044800.1	PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Osmosensitive K+ channel His kinase sensor; UspA domain protein; KEGG: rsp:RSP_1268 osmosensitive K+ channel histidine kinase
YP_001044801.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rsp:RSP_1269 two component transcriptional regulator, winged helix family
YP_001044802.1	PFAM: CsbD family protein; KEGG: rsp:RSP_1270 hypothetical protein
YP_001044803.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation/phosphoacceptor; KEGG: rsp:RSP_1271 periplasmic sensor signal transduction histidine kinase
YP_001044804.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_001044805.1	KEGG: rsp:RSP_1273 hypothetical protein
YP_001044806.1	in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media
YP_001044807.1	KEGG: rsp:RSP_6152 hypothetical protein
YP_001044808.1	PFAM: cyclic nucleotide-binding; KEGG: rsp:RSP_1275 Crp-Fnr family transciptional regulator
YP_001044809.1	KEGG: rsp:RSP_1276 hypothetical protein
YP_001044810.1	PFAM: N-acylglucosamine 2-epimerase; KEGG: rsp:RSP_1277 hypothetical protein
YP_001044811.1	catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate
YP_001044812.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rsp:RSP_1279 CbbY family protein
YP_001044813.1	PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_1280 CbbX protein
YP_001044814.1	PFAM: ribulose bisphosphate carboxylase, small chain; KEGG: rsp:RSP_1281 ribulose bisphosphate carboxylase, small subunit
YP_001044815.1	type III RuBisCO; involved in carbon fixation
YP_001044816.1	class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis
YP_001044817.1	PFAM: phosphoribulokinase/uridine kinase; KEGG: rsp:RSP_1284 phosphoribulokinase
YP_001044818.1	PFAM: Inositol phosphatase/fructose-1,6-bisphosphatase; KEGG: rsp:RSP_1285 fructose-1,6-bisphosphatase I
YP_001044819.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_1286 RuBisCO operon transcriptional regulator, CbbR
YP_001044820.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_1287 ABC branched chain amino acid family transporter, ATPase subunit
YP_001044821.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_1288 ABC branched chain amino acid family transporter, ATPase subunit
YP_001044822.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_1289 ABC branched chain amino acid family transporter, inner membrane subunit
YP_001044823.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_1290 ABC branched chain amino acid family transporter, inner membrane subunit
YP_001044824.1	KEGG: rsp:RSP_1291 ABC branched chain amino acid family transporter, periplasmic substrate binding protein
YP_001044825.1	KEGG: rsp:RSP_6153 hypothetical protein
YP_001044826.1	PFAM: aldehyde dehydrogenase; KEGG: rsp:RSP_1292 putative aldehyde dehydrogenase
YP_001044827.1	KEGG: rsp:RSP_1293 putative acyl-carrier protein
YP_001044828.1	PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein; KEGG: rsp:RSP_1294 possible 2-oxoisovalerate dehydrogenase; E1 component, alpha and beta subunit
YP_001044829.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rsp:RSP_1295 putative acyl-CoA dehydrogenase
YP_001044830.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_1297 transcriptional regulator, LysR family
YP_001044831.1	KEGG: rsp:RSP_1296 putative N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase
YP_001044832.1	KEGG: rsp:RSP_1299 putative binding domain
YP_001044833.1	PFAM: phosphoesterase, PA-phosphatase related; KEGG: rsp:RSP_1300 hypothetical protein
YP_001044834.1	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: rsp:RSP_1301 putative peptidase
YP_001044835.1	KEGG: rsp:RSP_6154 hypothetical protein
YP_001044836.1	KEGG: rsp:RSP_1302 putative chemotaxis MotB protein
YP_001044837.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rsp:RSP_1303 putative flagellar hook protein
YP_001044838.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_001044839.1	KEGG: rsp:RSP_1305 putative flagellar hook-associated protein
YP_001044840.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_001044841.1	KEGG: rsp:RSP_1306 PAS sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_001044842.1	KEGG: rsp:RSP_1308 hypothetical protein
YP_001044843.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_001044844.1	PFAM: surface presentation of antigens (SPOA) protein; KEGG: rsp:RSP_1310 putative flagellar motor switch protein FliN/FliY
YP_001044845.1	KEGG: rsp:RSP_1311 putative flagellar biosynthesis/type III secretory pathway protein
YP_001044846.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_001044847.1	PFAM: flagellar basal body-associated protein FliL; KEGG: rsp:RSP_1313 possible flagellar synthesis protein
YP_001044848.1	KEGG: rsp:RSP_1314 hypothetical protein
YP_001044849.1	KEGG: rsp:RSP_1315 hypothetical protein
YP_001044850.1	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_001044851.1	KEGG: rsp:RSP_1318 hypothetical protein
YP_001044852.1	PFAM: Lytic transglycosylase, catalytic; KEGG: rsp:RSP_1319 possible invasion protein
YP_001044853.1	membrane protein involved in the flagellar export apparatus
YP_001044854.1	PFAM: type III secretion system inner membrane R protein; KEGG: rsp:RSP_1321 flagellar biosynthesis pathway, component FliR
YP_001044855.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_001044856.1	KEGG: rsp:RSP_6155 hypothetical protein
YP_001044858.1	part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod
YP_001044859.1	required for the assembly of the flagellar basal body P-ring
YP_001044860.1	makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella
YP_001044861.1	FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Rhodobacter sphaeroides has 2 copies of this and other flagella genes
YP_001044862.1	PFAM: export protein FliQ, family 3; KEGG: rsp:RSP_1328 flagellar biosynthetic protein FliQ
YP_001044863.1	forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella
YP_001044864.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_001044865.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod
YP_001044866.1	TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: rsp:RSP_3342 bacterioferritin
YP_001044867.1	PFAM: glycosyl transferase, group 1; KEGG: rsp:RSP_3343 putative glycosyl transferase
YP_001044868.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rsp:RSP_3344 PAS sensor diguanylate cyclase
YP_001044869.1	PFAM: protein of unknown function UPF0118; KEGG: rsp:RSP_3345 hypothetical protein
YP_001044870.1	KEGG: rsp:RSP_3346 5-methyltetrahydrofolate--homocysteine methyltransferase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase, DHPS; Methionine synthase, B12-binding module, cap domain protein; Vitamin B12 dependent methionine synthase, activation region; cobalamin B12-binding domain protein
YP_001044871.1	PFAM: homocysteine S-methyltransferase; KEGG: rsp:RSP_3347 methionine synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase
YP_001044872.1	KEGG: rsp:RSP_3349 hypothetical protein
YP_001044873.1	KEGG: rsp:RSP_3350 lipocalin-related protein
YP_001044874.1	KEGG: rsp:RSP_3351 hypothetical protein
YP_001044875.1	PFAM: phage late control D family protein; KEGG: rsp:RSP_3359 phage tail protein D
YP_001044876.1	PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: rsp:RSP_3360 adenine specific DNA methyltransferase, D12 class
YP_001044877.1	PFAM: protein of unknown function DUF450; KEGG: rsp:RSP_3361 putative restriction endonuclease or methylase
YP_001044880.1	KEGG: rsp:RSP_3363 hypothetical protein
YP_001044881.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_001044882.1	TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: rsp:RSP_3365 protein secretion chaperonine
YP_001044883.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rsp:RSP_3366 D-isomer specific 2-hydroxyacid dehydrogenase
YP_001044884.1	KEGG: rsp:RSP_3367 hypothetical protein
YP_001044885.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: rsp:RSP_3368 periplasmic sensor diguanylate cyclase
YP_001044886.1	KEGG: rsp:RSP_6179 hypothetical protein
YP_001044887.1	PFAM: Amidase; KEGG: rsp:RSP_3369 Asp-tRNA Asn/Glu-tRNA Gln amidotransferase subunit A
YP_001044888.1	PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_3370 TRAP-T family transporter, DctM (12 TMs) subunit
YP_001044889.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rsp:RSP_3371 TRAP-T family transporter, small (4 TMs) inner membrane subunit
YP_001044890.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_3372 TRAP-T family transporter, periplasmic binding protein
YP_001044891.1	PFAM: protein of unknown function DUF214; KEGG: rsp:RSP_3373 ABC efflux transporter, inner membrane subunit
YP_001044892.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3374 ABC efflux transporter, ATPase subunit
YP_001044893.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rsp:RSP_3375 membrane fusion protein, HlyD family
YP_001044894.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_001044895.1	KEGG: rsp:RSP_3377 glutathione S-transferase family protein
YP_001044896.1	KEGG: rsp:RSP_3378 hypothetical protein
YP_001044897.1	KEGG: rsp:RSP_3379 hypothetical protein
YP_001044898.1	PFAM: protein of unknown function DUF1236; SH3, type 3 domain protein; KEGG: rsp:RSP_3380 hypothetical protein
YP_001044899.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsp:RSP_3381 NAD(P)H -dependent quinone oxidoreductase
YP_001044900.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rsp:RSP_3382 hypothetical protein
YP_001044901.1	PFAM: cyclase family protein; KEGG: rsp:RSP_3383 hypothetical protein
YP_001044902.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rsp:RSP_3384 mandelate racemase/muconate lactonizing enzyme family protein
YP_001044903.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_3385 transcriptional regulator, LysR family
YP_001044904.1	PFAM: Uncharacterized protein UPF0065; KEGG: rsp:RSP_3386 TRAP-T family transporter, periplasmic binding protein
YP_001044905.1	PFAM: protein of unknown function DUF112, transmembrane; KEGG: rsp:RSP_3387 TRAP-T family transporter, fused small and large inner membrane subunits
YP_001044906.1	KEGG: rsp:RSP_3388 putative isocitrate/isopropylmalate dehydrogenase / tartrate dehydrogenase TtuC; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase
YP_001044907.1	KEGG: rsp:RSP_3389 isocitrate/isopropylmalate dehydrogenase / tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase
YP_001044908.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3390 ABC Fe3+-siderophores transporter, ATPase subunit
YP_001044909.1	PFAM: transport system permease protein; KEGG: rsp:RSP_3391 ABC Fe3+-siderophores transporter, inner membrane subunit
YP_001044910.1	PFAM: periplasmic binding protein; KEGG: rsp:RSP_3392 ABC Fe3+-siderophores transporter, periplasmic binding protein
YP_001044911.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3393 ABC opine/polyamine transporter, inner membrane subunit
YP_001044912.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3395 ABC opine/polyamine transporter, inner membrane subunit
YP_001044913.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_3396 ABC opine/polyamine transporter, ATPase subunit
YP_001044914.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_3397 ABC opine/polyamine transporter, periplasmic binding protein
YP_001044915.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: rsp:RSP_3398 hypothetical protein
YP_001044916.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rsp:RSP_3399 carbon-nitrogen hydrolase family protein
YP_001044917.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_3400 transcriptional regulator, LysR family
YP_001044918.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rsp:RSP_6180 hypothetical protein
YP_001044919.1	KEGG: rsp:RSP_3402 multisensor diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_001044920.1	PFAM: protein of unknown function DUF218; KEGG: rsp:RSP_3403 hypothetical protein
YP_001044921.1	KEGG: rsp:RSP_3404 hypothetical protein
YP_001044922.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_3405 transcriptional regulator, GntR family
YP_001044923.1	KEGG: rsp:RSP_3406 4-hydroxythreonine-4-phosphate dehydrogenase 2; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA
YP_001044924.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rsp:RSP_3407 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding subunit
YP_001044925.1	PFAM: dihydrodipicolinate synthetase; KEGG: rsp:RSP_3408 dihydrodipicolinate synthetase
YP_001044926.1	PFAM: protein of unknown function DUF112, transmembrane; KEGG: rsp:RSP_3409 TRAP-T family transporter, large (12 TMs) inner membrane subunit
YP_001044927.1	PFAM: Uncharacterized protein UPF0065; KEGG: rsp:RSP_3410 TRAP-T family transporter, periplasmic binding protein
YP_001044928.1	KEGG: rsp:RSP_3411 TRAP-T family transporter, small (4 TMs) inner membrane subunit
YP_001044929.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: rsp:RSP_3412 iron-containing alcohol dehydrogenase
YP_001044930.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3413 ABC Fe+3-siderophore transporter, ATPase subunit
YP_001044931.1	PFAM: transport system permease protein; KEGG: rsp:RSP_3414 ABC Fe+3-siderophore transporter, inner membrane subunit
YP_001044932.1	PFAM: transport system permease protein; KEGG: rsp:RSP_3415 ABC Fe+3-siderophore transporter, inner membrane subunit
YP_001044933.1	PFAM: periplasmic binding protein; KEGG: rsp:RSP_3416 ABC Fe+3-siderophore transporter, periplasmic binding protein
YP_001044934.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rsp:RSP_3417 TonB dependent outer membrane ferrichrome-iron receptor
YP_001044935.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: pde:Pden_3520 helix-turn-helix-domain containing protein, AraC type
YP_001044936.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: rsp:RSP_3419 hypothetical protein
YP_001044937.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rsp:RSP_3420 methyl-accepting chemotaxis protein
YP_001044938.1	KEGG: rsp:RSP_3421 hypothetical protein
YP_001044939.1	KEGG: rsp:RSP_3422 hypothetical protein
YP_001044940.1	TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rsp:RSP_3423 probable exodeoxyribonuclease III
YP_001044941.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_3424 hypothetical protein
YP_001044942.1	KEGG: rsp:RSP_3425 hypothetical protein
YP_001044943.1	PFAM: glutathionylspermidine synthase; KEGG: rsp:RSP_3426 hypothetical protein
YP_001044944.1	PFAM: Animal haem peroxidase; KEGG: rsp:RSP_3427 hypothetical protein
YP_001044945.1	KEGG: rsp:RSP_3428 hypothetical protein
YP_001044946.1	PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: rsp:RSP_3429 hypothetical protein
YP_001044947.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rsp:RSP_3430 transcriptional regulator, winged helix family
YP_001044948.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_3431 periplasmic sensor signal transduction histidine kinase
YP_001044949.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rsp:RSP_3432 methyl-accepting chemotaxis protein
YP_001044950.1	PFAM: CopG domain protein DNA-binding domain protein; KEGG: rsp:RSP_3433 transcriptionalregulator, CopG family
YP_001044951.1	KEGG: rsp:RSP_3434 hypothetical protein
YP_001044952.1	KEGG: rsp:RSP_3435 possible DNA-binding protein
YP_001044953.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_3436 transcriptional regulator, LysR-family
YP_001044954.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001044955.1	PFAM: Endoribonuclease L-PSP; KEGG: rsp:RSP_3438 translation initiation inhibitor
YP_001044956.1	PFAM: aminotransferase, class I and II; KEGG: rsp:RSP_3439 aspartate aminotransferase
YP_001044957.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_3440 putative short chain dehydrogenase
YP_001044958.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: rsp:RSP_3441 hypothetical protein
YP_001044959.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rsp:RSP_3442 2-hydroxyacid dehydrogenase
YP_001044960.1	PFAM: Acetamidase/Formamidase; KEGG: rsp:RSP_3443 putative acetamidase/formamidase
YP_001044961.1	PFAM: creatinase; peptidase M24; KEGG: rsp:RSP_3444 putative Xaa-Pro aminopeptidase
YP_001044962.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_3445 transcriptional regulator, GntR family
YP_001044963.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_001044964.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rsp:RSP_3447 putative dehydrogenase
YP_001044965.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_3448 transcriptional regulator, GntR-family
YP_001044966.1	TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: rsp:RSP_3449 putative allophanate hydrolase subunit 2
YP_001044967.1	PFAM: Allophanate hydrolase subunit 1; KEGG: rsp:RSP_3450 hypothetical protein
YP_001044968.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_3451 TRAP-T family transporter, large (12TMs) inner membrane subunit
YP_001044969.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rsp:RSP_3452 TRAP-T family transporter, small (4TMs) inner membrane subunit
YP_001044970.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_3453 TRAP-T family transporter, periplasmic binding protein
YP_001044971.1	PFAM: LamB/YcsF family protein; KEGG: rsp:RSP_3454 hypothetical protein
YP_001044972.1	PFAM: aminotransferase, class IV; KEGG: rsp:RSP_3455 D-alanine aminotransferase
YP_001044973.1	PFAM: dihydrodipicolinate synthetase; KEGG: rsp:RSP_3456 putative dihydrodipicolinate synthase
YP_001044974.1	PFAM: extracellular solute-binding protein, family 3; KEGG: rsp:RSP_3457 ABC polar amino acid transporter, periplasmic binding protein
YP_001044975.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3458 ABC polar amino acid transporter, ATPase subunit
YP_001044976.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3459 ABC polar amino acid transporter, inner membrane subunit
YP_001044977.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3460 ABC polar amino acid transporter, inner membrane subunit
YP_001044978.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rsp:RSP_3461 N-carbamyl-D-amino acid amidohydrolase
YP_001044979.1	catalyzes the hydrolytic cleavage of imides that range from linear to heterocyclic and that include hydantoins, dihydropyrimidines, and phthalimides
YP_001044980.1	PFAM: Asp/Glu racemase; KEGG: rsp:RSP_3463 putative hydantoin racemase
YP_001044981.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_3464 transcriptional regulator, LysR-family
YP_001044982.1	KEGG: rsp:RSP_3465 hypothetical protein
YP_001044983.1	KEGG: rsp:RSP_3466 hypothetical protein
YP_001044984.1	KEGG: rsp:RSP_3467 hypothetical protein
YP_001044985.1	catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP
YP_001044986.1	KEGG: rsp:RSP_3469 hypothetical protein
YP_001044987.1	KEGG: rsp:RSP_3470 hypothetical protein
YP_001044988.1	KEGG: rsp:RSP_3471 hypothetical protein
YP_001044989.1	KEGG: rsp:RSP_3472 hypothetical protein
YP_001044990.1	PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_3474 hypothetical protein
YP_001044991.1	PFAM: protein of unknown function RIO1; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rsp:RSP_3475 serine/threonine protein kinase
YP_001044992.1	PFAM: ImpA domain protein; KEGG: rsp:RSP_3476 hypothetical protein
YP_001044993.1	PFAM: Uncharacterised conserved protein UCP028301; KEGG: rsp:RSP_3477 hypothetical protein
YP_001044994.1	PFAM: protein of unknown function DUF877; KEGG: rsp:RSP_3478 hypothetical protein
YP_001044995.1	PFAM: protein of unknown function DUF796; KEGG: rsp:RSP_3479 hypothetical protein
YP_001044996.1	PFAM: GPW/gp25 family protein; KEGG: rsp:RSP_3480 hypothetical protein
YP_001044997.1	PFAM: protein of unknown function DUF879; KEGG: rsp:RSP_3481 hypothetical protein
YP_001044998.1	PFAM: protein of unknown function DUF1305; KEGG: rsp:RSP_3482 hypothetical protein
YP_001044999.1	PFAM: Forkhead-associated protein; KEGG: rsp:RSP_3483 FHA domain-containing protein
YP_001045000.1	KEGG: rsp:RSP_3484 hypothetical protein
YP_001045001.1	PFAM: protein of unknown function DUF876; KEGG: rsp:RSP_3485 hypothetical protein
YP_001045002.1	PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_3486 possible outer membrane protein, OmpA family
YP_001045003.1	PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: rsp:RSP_3487 hypothetical protein
YP_001045004.1	KEGG: rsp:RSP_3488 hypothetical protein
YP_001045005.1	PFAM: Rhs element Vgr protein; Gp5 domain protein; KEGG: rsp:RSP_3489 hypothetical protein
YP_001045006.1	PFAM: protein of unknown function DUF1215; KEGG: rsp:RSP_3490 hypothetical protein
YP_001045007.1	KEGG: rsp:RSP_3491 hypothetical protein
YP_001045008.1	PFAM: protein phosphatase 2C domain protein; Stage II sporulation E family protein; KEGG: rsp:RSP_3492 protein phosphatase 2C-like
YP_001045009.1	PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_3494 OmpA/MotB domain protein
YP_001045010.1	KEGG: rsp:RSP_3493 hypothetical protein
YP_001045011.1	KEGG: rsp:RSP_3495 hypothetical protein
YP_001045012.1	KEGG: rsp:RSP_3496 zinc carboxypeptidase A metalloprotease (M14)
YP_001045014.1	PFAM: Sel1 domain protein repeat-containing protein; peptidase C14, caspase catalytic subunit p20; KEGG: rsp:RSP_3497 caspase-1, P20
YP_001045015.1	KEGG: rsp:RSP_6182 hypothetical protein
YP_001045016.1	KEGG: rsp:RSP_3498 antifreeze protein, type I
YP_001045017.1	KEGG: rsp:RSP_3499 short chain dehydrogenase
YP_001045018.1	KEGG: rsp:RSP_3500 ABC sugar transporter, periplasmic binding protein
YP_001045019.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_3501 ABC sugar transporter, inner membrane subunit
YP_001045020.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_3502 ABC sugar transporter, inner membrane subunit
YP_001045021.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3503 ABC sugar transporter, fused ATPase domains
YP_001045022.1	PFAM: putative sugar-binding domain protein; KEGG: rsp:RSP_3505 transcriptional regulator, DeoR family
YP_001045023.1	PFAM: carbohydrate kinase, FGGY; KEGG: rsp:RSP_3506 probable sugar kinase, EGGY family protein
YP_001045024.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rsp:RSP_3507 hypothetical protein
YP_001045025.1	PFAM: Acetamidase/Formamidase; KEGG: rsp:RSP_3508 predicted acetamidase/formamidase
YP_001045026.1	PFAM: Hemolysin-type calcium-binding region; KEGG: rsp:RSP_3509 hemolysin-type calcium-binding region, RTX
YP_001045027.1	KEGG: rsp:RSP_3510 hypothetical protein
YP_001045028.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rsp:RSP_3511 two component transcriptional regulator, winged helix family family
YP_001045029.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_3512 periplasmic sensor signal transduction histidine kinase
YP_001045030.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: rsp:RSP_3513 GAF sensor diguanylate cyclase
YP_001045031.1	PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: rsp:RSP_3514 transcriptional regulator, AraC family
YP_001045032.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_3515 ABC polyamine/opine transporter, periplasmic binding protein
YP_001045033.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_3516 ABC polyamine/opine transporter, ATPase subunit
YP_001045034.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3517 ABC polyamine/opine transporter, inner membrane subunit
YP_001045035.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3518 ABC polyamine/opine transporter, inner membrane subunit
YP_001045036.1	PFAM: proline racemase; KEGG: rsp:RSP_3519 putative proline racemase
YP_001045037.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3520 ABC peptide transporter, fused ATPase domains
YP_001045038.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3522 ABC peptide transporter, inner membrane subunit
YP_001045039.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3523 ABC peptide transporter, inner membrane subunit
YP_001045040.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rsp:RSP_3524 ABC peptide transporter, periplasmic binding protein
YP_001045041.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rsp:RSP_3525 ABC peptide transporter, periplasmic binding protein
YP_001045042.1	PFAM: Amidase; KEGG: rsp:RSP_3526 amidase
YP_001045043.1	PFAM: histone deacetylase superfamily; KEGG: rsp:RSP_3527 probable acetylpolyamine aminohydrolase
YP_001045044.1	PFAM: regulatory protein, TetR; KEGG: rsp:RSP_3528 transcriptional regulator, TetR family
YP_001045045.1	PFAM: amidohydrolase 2; KEGG: rsp:RSP_3529 hypothetical protein
YP_001045046.1	PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_3530 oxidoreductase
YP_001045047.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rsp:RSP_3532 AMP-binding enzyme
YP_001045048.1	PFAM: aldehyde dehydrogenase; KEGG: rsp:RSP_3533 aldehyde dehydrogenase family protein
YP_001045049.1	PFAM: aminotransferase class-III; KEGG: rsp:RSP_3534 hypothetical protein
YP_001045050.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rsp:RSP_3535 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase bifunctional enzyme
YP_001045051.1	catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA
YP_001045052.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: rsp:RSP_3537 alcohol dehydrogenase, zinc-containing
YP_001045053.1	KEGG: rsp:RSP_3538 hypothetical protein
YP_001045054.1	TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; KEGG: rsp:RSP_3540 putative adhesin or RTX toxin
YP_001045055.1	KEGG: rsp:RSP_3542 hypothetical protein
YP_001045056.1	KEGG: sil:SPOA0091 IS3 family transposase orfA
YP_001045057.1	PFAM: Integrase, catalytic region; KEGG: rsp:RSP_1966 possible ISSod13, transposase
YP_001045058.1	KEGG: sil:SPOA0091 IS3 family transposase orfA
YP_001045059.1	KEGG: mgm:Mmc1_0568 putative ATP-binding protein
YP_001045060.1	KEGG: eli:ELI_14740 hypothetical protein
YP_001045061.1	KEGG: mmc:Mmcs_4842 hypothetical protein
YP_001045062.1	PFAM: Integrase, catalytic region; KEGG: rsp:RSP_1966 possible ISSod13, transposase
YP_001045063.1	PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sfu:Sfum_1438 type III restriction enzyme, res subunit
YP_001045065.1	KEGG: rpb:RPB_2536 hypothetical protein
YP_001045066.1	PFAM: IS66 Orf2 family protein; KEGG: rle:pRL70161 putative transposase-related protein
YP_001045067.1	PFAM: transposase IS3/IS911 family protein; KEGG: ret:RHE_PA00103 putative insertion sequence transposase protein
YP_001045068.1	KEGG: bja:bll1926 hypothetical protein
YP_001045069.1	KEGG: xac:XAC2444 hypothetical protein
YP_001045070.1	KEGG: rsp:RSP_2500 hypothetical protein
YP_001045071.1	KEGG: rde:RD1_4047 transposition protein, putative
YP_001045072.1	KEGG: rle:RL2132 hypothetical protein
YP_001045074.1	KEGG: rpc:RPC_3216 hypothetical protein
YP_001045075.1	KEGG: mca:MCA0474 ATP-dependent DNA helicase, UvrD/REP family
YP_001045076.1	KEGG: ppu:PP_4447 hypothetical protein
YP_001045077.1	KEGG: ppu:PP_4448 hypothetical protein
YP_001045078.1	KEGG: rde:RD1_4051 hypothetical protein
YP_001045079.1	PFAM: Integrase, catalytic region; KEGG: rde:RD1_4048 transposase, putative
YP_001045082.1	KEGG: rde:RD1_0796 transposition protein, putative
YP_001045083.1	KEGG: rde:RD1_0797 transposase, putative
YP_001045084.1	KEGG: bms:BR0728 hypothetical protein
YP_001045085.1	PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: rde:RD1_4059 Lon protease, putative
YP_001045088.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: bbr:BB4812 hypothetical protein
YP_001045089.1	KEGG: neu:NE1882 hypothetical protein
YP_001045090.1	KEGG: net:Neut_1966 conserved hypothetical protein
YP_001045091.1	KEGG: sil:SPO0624 hypothetical protein
YP_001045092.1	PFAM: transposase, IS4 family protein; KEGG: rde:RD1_3444 transposase, putative
YP_001045093.1	KEGG: rpe:RPE_1034 hypothetical protein
YP_001045094.1	PFAM: helicase domain protein; type III restriction enzyme, res subunit; protein of unknown function DUF450; EcoEI R, C-terminal domain protein; SMART: DEAD-like helicases-like; KEGG: nwi:Nwi_1255 DEAD/DEAH box helicase
YP_001045095.1	PFAM: N-6 DNA methylase; KEGG: nwi:Nwi_1254 N-6 DNA methylase
YP_001045096.1	PFAM: restriction modification system DNA specificity domain; KEGG: nwi:Nwi_1253 type I restriction enzyme EcoAI specificity protein
YP_001045098.1	KEGG: nha:Nham_2090 hypothetical protein
YP_001045099.1	TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit, N terminal domain protein; KEGG: rsp:RSP_3547 ribonucleotide reductase
YP_001045100.1	PFAM: Uncharacterised conserved protein UCP032025; KEGG: rsp:RSP_3548 hypothetical protein
YP_001045101.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_001045102.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_001045103.1	KEGG: rsp:RSP_3552 SlyX protein
YP_001045104.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_001045105.1	PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: rsp:RSP_3554 xanthine dehydrogenase, small subunit
YP_001045106.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rsp:RSP_3555 xanthine dehydrogenase, large subunit
YP_001045107.1	PFAM: protein of unknown function DUF182; KEGG: rsp:RSP_3556 xanthine dehydrogenase chaperone/MPT insertion protein
YP_001045108.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3557 ABC transporter, fused ATPase domains
YP_001045109.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_3558 ABC transporter, inner membrane subunit
YP_001045110.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_3559 ABC transporter, inner membrane subunit
YP_001045111.1	PFAM: basic membrane lipoprotein; KEGG: rsp:RSP_3560 possible ABC transporter, periplasmic binding protein
YP_001045112.1	KEGG: rsp:RSP_3561 hypothetical protein
YP_001045113.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsp:RSP_3562 sulfide-quinone reductase
YP_001045114.1	PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_3563 putative FAD-dependent glycerol-3-phosphate dehydrogenase protein
YP_001045115.1	PFAM: protein of unknown function DUF938; KEGG: rsp:RSP_3564 generic methyltransferase
YP_001045116.1	PFAM: glycoside hydrolase, family 25; KEGG: rsp:RSP_3565 glycoside hydrolase, family 25
YP_001045117.1	PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: rsp:RSP_3566 dimethylglycine dehydrogenase
YP_001045118.1	PFAM: transport system permease protein; ABC-3 protein; KEGG: rsp:RSP_3567 ABC zinc tranporter, inner membrane subunit ZnuB
YP_001045119.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3568 ABC zinc transporter, ATPase subunit ZnuC
YP_001045120.1	KEGG: rsp:RSP_3569 zinc-uptake regulator, Zur
YP_001045121.1	PFAM: periplasmic solute binding protein; KEGG: rsp:RSP_3571 ABC zinc transporter, periplasmic binding protein ZnuA
YP_001045122.1	PFAM: Aldose 1-epimerase; KEGG: rsp:RSP_3572 putative aldose 1-epimerase protein
YP_001045123.1	involved in formation of gas vesicle which are protein structures that contain gas involved in buoyancy; part of an operon of other gas vesicle synthesis proteins
YP_001045124.1	PFAM: phenylalanine/histidine ammonia-lyase; KEGG: rsp:RSP_3574 putative histidine ammonia-lyase
YP_001045125.1	PFAM: Gas vesicle K; KEGG: rsp:RSP_3575 putative gas vesicle synthesis protein
YP_001045126.1	KEGG: rsp:RSP_6183 hypothetical protein
YP_001045127.1	KEGG: rsp:RSP_6233 gas vesicle operon protein
YP_001045128.1	PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: rsp:RSP_3576 hypothetical protein
YP_001045129.1	KEGG: rsp:RSP_3577 putative gas vesicle synthesis protein
YP_001045130.1	PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: rsp:RSP_3578 putative gas vesicle synthesis protein
YP_001045131.1	KEGG: rsp:RSP_3579 heat shock protein HSP20
YP_001045132.1	PFAM: gas vesicle protein GVPa; KEGG: rsp:RSP_3580 gas vesicle protein GVPa
YP_001045133.1	PFAM: Gas vesicle synthesis family protein; KEGG: rsp:RSP_3581 hypothetical protein
YP_001045134.1	KEGG: rsp:RSP_6184 hypothetical protein
YP_001045135.1	PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rsp:RSP_3582 ATPase
YP_001045136.1	PFAM: protein of unknown function DUF989; KEGG: rsp:RSP_3583 class I monoheme cytochrome c
YP_001045137.1	KEGG: rsp:RSP_3584 hypothetical protein
YP_001045138.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_001045139.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_3586 putative aromatic pathway regulator
YP_001045140.1	catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis
YP_001045141.1	KEGG: rsp:RSP_3588 hypothetical protein
YP_001045142.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_001045143.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_001045144.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_001045145.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_001045146.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_001045147.1	KEGG: rsp:RSP_3594 antifreeze protein, type I
YP_001045148.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_001045149.1	TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rsp:RSP_3596 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_001045150.1	PFAM: CBS domain containing protein; transporter-associated region; KEGG: rsp:RSP_3597 CorC/HlyC family protein with CBS domains
YP_001045151.1	PFAM: protein of unknown function UPF0054; KEGG: rsp:RSP_3598 hypothetical protein
YP_001045152.1	PFAM: PhoH family protein; KEGG: rsp:RSP_3599 hypothetical protein
YP_001045153.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_001045154.1	PFAM: lipolytic enzyme, G-D-S-L family; KEGG: rsp:RSP_3601 lipolytic enzyme, G-D-S-L family
YP_001045155.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3602 ABC efflux transporter, ATPase subunit
YP_001045156.1	PFAM: protein of unknown function DUF214; KEGG: rsp:RSP_3603 possible ABC efflux tranporter, fused inner membrane domains
YP_001045157.1	KEGG: rsp:RSP_6185 hypothetical protein
YP_001045158.1	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
YP_001045159.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsp:RSP_3605 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_001045160.1	TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: rsp:RSP_3606 sigma54-2 (RNA polymerase sigma-54 factor)
YP_001045161.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: rsp:RSP_3607 hypothetical protein
YP_001045162.1	PFAM: phage integrase family protein; KEGG: rsp:RSP_3623 putative integrase
YP_001045164.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: nwi:Nwi_0847 DNA methylase N-4/N-6
YP_001045165.1	KEGG: rsp:RSP_3624 hypothetical protein
YP_001045167.1	KEGG: rsp:RSP_3794 hypothetical protein
YP_001045169.1	KEGG: nwi:Nwi_1563 hypothetical protein
YP_001045170.1	KEGG: rsp:RSP_3796 hypothetical protein
YP_001045171.1	KEGG: rsp:RSP_3797 hypothetical protein
YP_001045172.1	KEGG: rsp:RSP_3799 hypothetical protein
YP_001045173.1	KEGG: rsp:RSP_3772 hypothetical protein
YP_001045174.1	KEGG: rsp:RSP_3773 hypothetical protein
YP_001045175.1	KEGG: rsp:RSP_3774 hypothetical protein
YP_001045176.1	KEGG: rsp:RSP_3775 hypothetical protein
YP_001045177.1	PFAM: Chromosomal replication initiator, DnaA C-terminal domain; KEGG: rsp:RSP_6202 hypothetical protein
YP_001045178.1	KEGG: rsp:RSP_2074 hypothetical protein
YP_001045179.1	KEGG: rsp:RSP_3777 hypothetical protein
YP_001045180.1	KEGG: rsp:RSP_6033 hypothetical protein
YP_001045181.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: rsp:RSP_2072 putative phage-related holin protein
YP_001045182.1	KEGG: rsp:RSP_2071 hypothetical protein
YP_001045183.1	PFAM: phage Terminase; KEGG: rsp:RSP_2070 putative phage-related terminase
YP_001045184.1	TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: rsp:RSP_2069 putative phage portal protein, HK97 family
YP_001045185.1	PFAM: peptidase S14, ClpP; KEGG: rsp:RSP_2068 putative ClpP-like protease
YP_001045186.1	TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: rsp:RSP_2067 putative prophage LambdaSo, major capsid protein, HK97 family
YP_001045187.1	KEGG: rsp:RSP_6032 potential TolA
YP_001045188.1	KEGG: rsp:RSP_6031 hypothetical protein
YP_001045189.1	TIGRFAM: phage head-tail adaptor, putative; KEGG: rsp:RSP_2066 hypothetical protein
YP_001045190.1	TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: rsp:RSP_2065 hypothetical protein
YP_001045191.1	KEGG: rsp:RSP_6013 hypothetical protein
YP_001045192.1	KEGG: rsp:RSP_2064 hypothetical protein
YP_001045193.1	KEGG: rsp:RSP_2063 hypothetical protein
YP_001045194.1	KEGG: rsp:RSP_2062 hypothetical protein
YP_001045195.1	KEGG: rsp:RSP_1637 hypothetical protein
YP_001045196.1	KEGG: rsp:RSP_3791 hypothetical protein
YP_001045197.1	KEGG: rsp:RSP_1635 hypothetical protein
YP_001045198.1	KEGG: rsp:RSP_1633 hypothetical protein
YP_001045199.1	KEGG: rsp:RSP_1632 hypothetical protein
YP_001045200.1	KEGG: rsp:RSP_1631 hypothetical protein
YP_001045204.1	KEGG: rsp:RSP_2050 hypothetical protein
YP_001045205.1	KEGG: rsp:RSP_3761 hypothetical protein
YP_001045207.1	PFAM: Collagen triple helix repeat; KEGG: rno:353303 procollagen, type XXIII, alpha 1
YP_001045210.1	PFAM: protein of unknown function UPF0150; KEGG: rsp:RSP_2748 possible transcriptional regulator, CopG family
YP_001045211.1	PFAM: YcfA family protein; KEGG: mmr:Mmar10_2094 YcfA family protein
YP_001045212.1	PFAM: phage integrase family protein; KEGG: rsp:RSP_3623 putative integrase
YP_001045213.1	PFAM: ParB domain protein nuclease; KEGG: rsp:RSP_2079 hypothetical protein
YP_001045214.1	KEGG: rsp:RSP_2078 hypothetical protein
YP_001045215.1	KEGG: rsp:RSP_1658 hypothetical protein
YP_001045216.1	KEGG: rsp:RSP_6187 hypothetical protein
YP_001045217.1	PFAM: helix-turn-helix domain protein; KEGG: hch:HCH_06281 predicted transcriptional regulator
YP_001045218.1	KEGG: rsp:RSP_6035 hypothetical protein
YP_001045219.1	KEGG: rsp:RSP_3611 hypothetical protein
YP_001045220.1	KEGG: rsp:RSP_3612 hypothetical protein
YP_001045221.1	KEGG: rsp:RSP_1654 hypothetical protein
YP_001045222.1	KEGG: rsp:RSP_6033 hypothetical protein
YP_001045223.1	KEGG: rsp:RSP_3779 hypothetical protein
YP_001045224.1	KEGG: rsp:RSP_3780 hypothetical protein
YP_001045225.1	PFAM: phage terminase GpA; KEGG: rsp:RSP_3781 putative phage terminase large subunit
YP_001045226.1	KEGG: rsp:RSP_3782 hypothetical protein
YP_001045227.1	TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: rsp:RSP_3783 putative bacteriophage-related protein, phage portal protein, lambda family
YP_001045228.1	PFAM: peptidase S49; KEGG: rsp:RSP_3627 periplasmic serine protease
YP_001045229.1	KEGG: rsp:RSP_6201 hypothetical protein
YP_001045230.1	KEGG: rsp:RSP_3785 putative bacteriophage-related protein
YP_001045231.1	KEGG: rsp:RSP_3786 hypothetical protein
YP_001045232.1	KEGG: rsp:RSP_6200 hypothetical protein
YP_001045233.1	KEGG: rsp:RSP_3787 hypothetical protein
YP_001045234.1	KEGG: rsp:RSP_3788 hypothetical protein
YP_001045235.1	KEGG: sit:TM1040_1660 hypothetical protein
YP_001045236.1	KEGG: rsp:RSP_3791 hypothetical protein
YP_001045237.1	KEGG: rsp:RSP_2058 hypothetical protein
YP_001045238.1	KEGG: rsp:RSP_1633 hypothetical protein
YP_001045239.1	KEGG: rsp:RSP_1632 hypothetical protein
YP_001045240.1	KEGG: rsp:RSP_1631 hypothetical protein
YP_001045241.1	KEGG: rsp:RSP_3767 hypothetical protein
YP_001045244.1	PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: rsp:RSP_2052 N6 adenine-specific DNA methyltransferase, D12 class
YP_001045245.1	KEGG: rsp:RSP_3760 hypothetical protein
YP_001045246.1	KEGG: rsp:RSP_3761 hypothetical protein
YP_001045247.1	KEGG: aci:ACIAD2953 hypothetical protein
YP_001045248.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nha:Nham_4464 DEAD/DEAH box helicase-like
YP_001045249.1	KEGG: nha:Nham_4463 hypothetical protein
YP_001045250.1	KEGG: rru:Rru_A0512 hypothetical protein
YP_001045251.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rru:Rru_A0511 DEAD/DEAH box helicase
YP_001045252.1	KEGG: neu:NE2513 putative (AF322013) ID483 [Bradyrhizobium japonicum]
YP_001045253.1	PFAM: DNA mismatch endonuclease vsr; KEGG: nha:Nham_2517 DNA mismatch endonuclease vsr
YP_001045254.1	KEGG: dvu:DVU2841 type II restriction endonuclease, putative
YP_001045255.1	KEGG: lpf:lpl0145 DNA (cytosine-5-)-methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase
YP_001045256.1	KEGG: rsp:RSP_3646 DNA topology modulation kinase FlaR, putative
YP_001045257.1	KEGG: rsp:RSP_3608 hypothetical protein
YP_001045258.1	catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate
YP_001045259.1	PFAM: aldehyde dehydrogenase; KEGG: rsp:RSP_3656 NAD-dependent aldehyde dehydrogenase
YP_001045260.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: rsp:RSP_3657 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase
YP_001045261.1	PFAM: HpcH/HpaI aldolase; KEGG: rsp:RSP_3658 putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
YP_001045262.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rsp:RSP_3659 predicted amidohydrolase
YP_001045263.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_3661 TRAP-T family transporter, periplasmic binding protein
YP_001045264.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_3662 TRAP-T family transporter, large (12TMs) inner membrane subunit
YP_001045265.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rsp:RSP_3663 TRAP-T family transporter, small (4TMs) inner membrane subunit
YP_001045266.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_3664 transcriptional regulator, GntR family
YP_001045267.1	PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: rsp:RSP_3665 transcriptional regulator, LuxR family
YP_001045268.1	TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rsp:RSP_3667 transcriptional regulator, AraC family with parallel beta-helix repeat
YP_001045269.1	KEGG: rsp:RSP_3669 hypothetical protein
YP_001045270.1	PFAM: oxidoreductase domain protein; KEGG: rsp:RSP_3670 putative oxidoreductase myo-inositol 2-dehydrogenase
YP_001045271.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rsp:RSP_3671 putative D-tagatose 3-epimerase
YP_001045272.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3672 ABC sugar transporter, inner membrane subunit
YP_001045273.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3673 ABC sugar transporter, inner membrane subunit
YP_001045274.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_3674 ABC sugar transporter, periplasmic binding protein
YP_001045275.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rsp:RSP_3675 esterase/lipase/thioesterase
YP_001045276.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_3676 transcriptional regulator, GntR family
YP_001045277.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_3677 ABC sugar transporter, ATPase subunit
YP_001045278.1	PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: rsp:RSP_3678 siderophore-interacting protein
YP_001045279.1	KEGG: rsp:RSP_3679 hypothetical protein
YP_001045280.1	PFAM: regulatory protein, TetR; KEGG: rsp:RSP_3680 transcriptional regulator, TetR family
YP_001045281.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsp:RSP_3681 putative NADH-dependent oxidase
YP_001045282.1	KEGG: rsp:RSP_3683 possible FemAB family protein
YP_001045283.1	PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: rsp:RSP_3684 transcriptional regulator, LuxR family
YP_001045284.1	KEGG: rsp:RSP_6198 hypothetical protein
YP_001045285.1	KEGG: rsp:RSP_6199 hypothetical protein
YP_001045286.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rsp:RSP_3686 transcriptional regulator, LacI family
YP_001045287.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rsp:RSP_3687 ABC sugar transporter, periplasmic binding protein
YP_001045288.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3688 ABC sugar transporter, ATPase subunit
YP_001045289.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_3689 ABC sugar transporter, inner membrane subunit
YP_001045290.1	PFAM: aryldialkylphosphatase; KEGG: rsp:RSP_3690 resiniferatoxin-binding, phosphotriesterase-related protein
YP_001045291.1	PFAM: protein of unknown function DUF1355; KEGG: rsp:RSP_3691 putative cytoplasmic protein
YP_001045292.1	PFAM: PfkB domain protein; KEGG: rsp:RSP_3692 carbohydrate kinase, PfkB/ribokinase
YP_001045293.1	PFAM: photosystem I assembly BtpA; KEGG: rsp:RSP_3693 BtpA protein
YP_001045294.1	PFAM: TENA/THI-4 domain protein; KEGG: rsp:RSP_3694 putative transcription activator
YP_001045295.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rsp:RSP_3695 putative acetylornithine deacetylase (acetylornithinase)
YP_001045296.1	KEGG: rsp:RSP_3696 ABC sulfate/thiosulfate transporter, ATPase subunit CysA; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_001045297.1	TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_3697 ABC sulfate/thiosulfate transporter, periplasmic binding protein CysP
YP_001045298.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3698 ABC sulfate/thiosulfate transporter, inner membrane subunit CysT
YP_001045299.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3699 ABC sulfate/thiosulfate transporter, inner membrane subunit CysW
YP_001045300.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rsp:RSP_3700 transcriptional regulator, LacI family
YP_001045301.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rsp:RSP_3701 ABC sugar transporter, periplasmic binding protein
YP_001045302.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3702 ABC sugar transporter, ATPase subunit
YP_001045303.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_3703 ABC sugar transporter, inner membrane subunit
YP_001045304.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_3704 ribitol 2-dehydrogenase
YP_001045305.1	TIGRFAM: FGGY-family pentulose kinase; PFAM: carbohydrate kinase, FGGY; KEGG: rsp:RSP_3705 D-ribulokinase
YP_001045306.1	KEGG: rsp:RSP_3706 hypothetical protein
YP_001045307.1	PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsp:RSP_3707 putative NADH dehydrogenase
YP_001045308.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rsp:RSP_3708 methyl accepting chemotaxis protein
YP_001045309.1	subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_001045310.1	subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport
YP_001045311.1	subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_001045312.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone
YP_001045313.1	subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_001045314.1	subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+
YP_001045315.1	catalyzes the formation of selenophosphate from selenide and ATP
YP_001045316.1	KEGG: rsp:RSP_3717 hypothetical protein
YP_001045317.1	KEGG: rsp:RSP_3718 hypothetical protein
YP_001045318.1	PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: rsp:RSP_3719 polysaccharide export transporter, PST family
YP_001045319.1	KEGG: rsp:RSP_3720 hypothetical protein
YP_001045320.1	PFAM: glycosyl transferase, group 1; KEGG: rsp:RSP_3721 hypothetical protein
YP_001045321.1	PFAM: phosphoribosyltransferase; KEGG: rsp:RSP_3722 hypothetical protein
YP_001045322.1	PFAM: acyltransferase 3; KEGG: rsp:RSP_3723 hypothetical protein
YP_001045323.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; KEGG: rsp:RSP_3724 periplasmic sensor signal transduction histidine kinase
YP_001045324.1	KEGG: rsp:RSP_3725 hypothetical protein
YP_001045325.1	KEGG: rsp:RSP_3727 hypothetical protein
YP_001045326.1	PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rsp:RSP_3728 putative acyl carrier protein phosphodiesterase
YP_001045327.1	KEGG: rsp:RSP_3729 hypothetical protein
YP_001045328.1	YghU; B2989; one of eight putative glutathione transferase proteins from E. coli
YP_001045329.1	PFAM: regulatory protein, DeoR; KEGG: rsp:RSP_3731 transcriptional regulator, DeoR family
YP_001045330.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rsp:RSP_3732 ABC sugar transporter, periplasmic binding protein
YP_001045331.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3733 ABC sugar transporter, fused ATPase domains
YP_001045332.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_3734 ABC sugar transporter, inner membrane subunit
YP_001045333.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_3735 ABC sugar transporter, inner membrane subunit
YP_001045334.1	KEGG: rsp:RSP_3736 hypothetical protein
YP_001045335.1	TIGRFAM: ribokinase; PFAM: PfkB domain protein; KEGG: rsp:RSP_3738 carbohydrate kinase, PfkB family
YP_001045336.1	KEGG: rsp:RSP_3739 deoxyribose phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase
YP_001045337.1	PFAM: aldehyde dehydrogenase; KEGG: rsp:RSP_3740 aldehyde dehydrogenase
YP_001045338.1	PFAM: extracellular solute-binding protein, family 3; KEGG: rsp:RSP_3742 ABC amino acid transporter, periplasmic binding protein
YP_001045339.1	TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rsp:RSP_3743 putative agmatinase
YP_001045340.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3744 ABC amino acid transporter, inner membrane subunit
YP_001045341.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3745 ABC amino acid transporter, ATPase subunit
YP_001045342.1	KEGG: rsp:RSP_3746 hypothetical protein
YP_001045343.1	PFAM: peptidase M24; KEGG: rsp:RSP_3747 putative dipeptidase
YP_001045344.1	PFAM: protein of unknown function DUF849; KEGG: rsp:RSP_3804 hypothetical protein
YP_001045345.1	PFAM: aminotransferase class-III; KEGG: rsp:RSP_3803 hypothetical protein
YP_001045346.1	PFAM: UspA domain protein; KEGG: rsp:RSP_3802 hypothetical protein
YP_001045347.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_1412 TRAP-T family transporter with fused DctQ/DctM subunits
YP_001045348.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: rsp:RSP_1413 TRAP-T family transporter, periplasmic binding component
YP_001045349.1	PFAM: sugar isomerase (SIS); KEGG: rsp:RSP_1414 hypothetical protein
YP_001045350.1	PFAM: polysaccharide deacetylase; KEGG: rsp:RSP_1415 putative polysaccharide deacetylase
YP_001045351.1	KEGG: rsp:RSP_1416 hypothetical protein
YP_001045352.1	PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rsp:RSP_1417 hypothetical protein
YP_001045353.1	PFAM: protein of unknown function DUF112, transmembrane; KEGG: rsp:RSP_1418 TRAP-T family transporter, large (12 TMs) inner membrane subunit
YP_001045354.1	KEGG: rsp:RSP_1419 TRAP-T family transporter, small (4 TMs) inner membrane subunit
YP_001045355.1	PFAM: Uncharacterized protein UPF0065; KEGG: rsp:RSP_1420 TRAP-T family transporter, periplasmic binding protein
YP_001045356.1	KEGG: rsp:RSP_1421 hypothetical protein
YP_001045357.1	PFAM: ParB domain protein nuclease; KEGG: rsp:RSP_1422 ParB-like nuclease
YP_001045358.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rsp:RSP_1423 ParA family ATPase
YP_001045359.1	KEGG: rsp:RSP_1425 plasmid replication initiation protein
YP_001045360.1	KEGG: rsp:RSP_3806 hypothetical protein
YP_001045361.1	KEGG: rsp:RSP_3808 hypothetical protein
YP_001045362.1	PFAM: plasmid stabilization system; KEGG: rsp:RSP_3809 hypothetical protein
YP_001045363.1	KEGG: rsp:RSP_3810 hypothetical protein
YP_001045364.1	KEGG: rsp:RSP_3811 hypothetical protein
YP_001045366.1	PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: rsp:RSP_3812 recombinase
YP_001045367.1	PFAM: ParB domain protein nuclease; RepB plasmid partition; KEGG: rsp:RSP_3813 ParB-like nuclease
YP_001045368.1	PFAM: RepB plasmid partition; SMART: ParB domain protein nuclease; KEGG: rsp:RSP_3814 hypothetical protein
YP_001045369.1	KEGG: sil:SPOA0122 ISSpo9, transposase
YP_001045373.1	KEGG: rsp:RSP_3313 possible phage integrase family protein
YP_001045374.1	KEGG: rsp:RSP_6232 hypothetical protein
YP_001045375.1	PFAM: ribosomal protein L21; KEGG: rsp:RSP_3819 ribosomal protein L21
YP_001045376.1	involved in the peptidyltransferase reaction during translation
YP_001045377.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_3821 putative acetyltransferase
YP_001045378.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_001045379.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_001045380.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_001045381.1	KEGG: rsp:RSP_3825 hypothetical protein
YP_001045382.1	KEGG: rsp:RSP_6239 hypothetical protein
YP_001045383.1	KEGG: rsp:RSP_3826 hypothetical protein
YP_001045384.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: rsp:RSP_3827 phospholipid/glycerol acyltransferase
YP_001045385.1	PFAM: thiamine monophosphate synthase; KEGG: rsp:RSP_3828 putative thiamine-phosphate pyrophosphorylase
YP_001045386.1	TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rsp:RSP_3829 tRNA/rRNA methyltransferase (SpoU)
YP_001045387.1	PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: rsp:RSP_3830 hypothetical protein
YP_001045388.1	PFAM: cytochrome oxidase assembly; KEGG: rsp:RSP_3831 putative cytochrome oxidase assembly factor
YP_001045389.1	PFAM: peptidase M32, carboxypeptidase Taq metallopeptidase; KEGG: rsp:RSP_3832 putative thermostable carboxypeptidase 1
YP_001045392.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001045393.1	TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rsp:RSP_3834 hypothetical protein
YP_001045394.1	PFAM: protein of unknown function DUF583; KEGG: rsp:RSP_3835 hypothetical protein
YP_001045395.1	KEGG: rsp:RSP_6211 hypothetical protein
YP_001045396.1	PFAM: Amidohydrolase 3; KEGG: rsp:RSP_3836 putative metal-dependent hydrolase
YP_001045397.1	KEGG: sil:SPOA0091 IS3 family transposase orfA
YP_001045398.1	KEGG: sit:TM1040_3780 conserved hypothetical protein
YP_001045399.1	PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sit:TM1040_3784 RNA polymerase, sigma-24 subunit, ECF subfamily
YP_001045400.1	KEGG: sit:TM1040_3783 conserved hypothetical protein
YP_001045401.1	KEGG: mlo:mll1500 glucose dehydrogenase
YP_001045402.1	PFAM: Pyrrolo-quinoline quinone; KEGG: xcb:XC_2659 glucose dehydrogenase
YP_001045403.1	PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rru:Rru_A1726 transcription-repair coupling factor
YP_001045404.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rde:RD1_0833 periplasmic substrate-binding transport protein, putative
YP_001045405.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vvy:VVA1579 TRAP-type C4-dicarboxylate transport system, large permease component
YP_001045406.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rde:RD1_0832 C4-dicarboxylate transport system, small permease protein, putative
YP_001045407.1	PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: mlo:mlr1886 D-mannonate oxidoreductase
YP_001045408.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rde:RD1_1048 L-idonate 5-dehydrogenase, putative
YP_001045409.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: rle:RL1496 putative sugar isomerase family protein
YP_001045410.1	PFAM: PfkB domain protein; KEGG: pde:Pden_1676 PfkB domain protein
YP_001045411.1	PFAM: regulatory protein, TetR; KEGG: tfu:Tfu_2799 TetR/AcrR family transcriptional regulator
YP_001045412.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rxy:Rxyl_0346 short-chain dehydrogenase/reductase SDR
YP_001045413.1	PFAM: AMP-dependent synthetase and ligase; KEGG: nfa:nfa55900 acyl-CoA synthase
YP_001045414.1	PFAM: Extracellular ligand-binding receptor; KEGG: fnu:FN1432 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein
YP_001045415.1	PFAM: inner-membrane translocator; KEGG: dge:Dgeo_2166 inner-membrane translocator
YP_001045416.1	PFAM: inner-membrane translocator; KEGG: gsu:GSU1732 branched-chain amino acid ABC transporter, permease protein
YP_001045417.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU3392 branched-chain amino acid ABC transporter, ATP-binding protein
YP_001045418.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1294 ABC-type branched-chain amino acid transport systems ATPase component
YP_001045419.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reh:H16_B0420 enoyl-CoA hydratase
YP_001045420.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: fal:FRAAL0183 putative enoyl-CoA hydratase-isomerase
YP_001045422.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpb:RPB_2554 TonB-dependent siderophore receptor
YP_001045423.1	PFAM: PepSY-associated TM helix domain protein; KEGG: sit:TM1040_0303 PepSY-associated TM helix
YP_001045424.1	KEGG: pde:Pden_0116 transferase hexapeptide repeat containing protein
YP_001045425.1	KEGG: rru:Rru_A3547 hypothetical protein
YP_001045426.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_001045427.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_001045428.1	KEGG: rsp:RSP_3186 hypothetical protein
YP_001045429.1	PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rpc:RPC_3502 cobalamin synthesis protein, P47K
YP_001045430.1	KEGG: jan:Jann_2252 hypothetical protein
YP_001045431.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mlo:mlr7815 transcriptional regulator
YP_001045432.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sme:SMc03185 putative NADPH dehydrogenase quinone reductase transmembrane protein
YP_001045433.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sma:SAV7278 GntR-family transcriptional regulator
YP_001045434.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sme:SMb21438 putative C4-dicarboxylate transport system, C4-dicarboxylate-binding protein precursor signal peptide
YP_001045435.1	KEGG: bcl:ABC4078 C4-dicarboxylate transport system permease small protein
YP_001045436.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: csa:Csal_3212 TRAP dicarboxylate transporter-DctM subunit
YP_001045437.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: bxe:Bxe_B0994 putative mandelate racemase / muconatelactonizing enzyme
YP_001045438.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rpb:RPB_0244 GCN5-related N-acetyltransferase
YP_001045439.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppu:PP_2054 transcriptional regulator, LysR family
YP_001045440.1	PFAM: protein of unknown function DUF453; KEGG: pfl:PFL_2497 protein of unknown function (DUF453) superfamily
YP_001045441.1	PFAM: Uncharacterized protein UPF0065; KEGG: csa:Csal_0164 uncharacterized protein UPF0065
YP_001045442.1	PFAM: protein of unknown function DUF112, transmembrane; KEGG: csa:Csal_0165 protein of unknown function DUF112, transmembrane
YP_001045443.1	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: bur:Bcep18194_C7686 glutathione S-transferase-like
YP_001045444.1	PFAM: MmgE/PrpD family protein; KEGG: bxe:Bxe_B0284 putative MmgE/PRP family protein
YP_001045445.1	PFAM: MmgE/PrpD family protein; KEGG: bxe:Bxe_B0284 putative MmgE/PRP family protein
YP_001045446.1	PFAM: MmgE/PrpD family protein; KEGG: bxe:Bxe_B0284 putative MmgE/PRP family protein
YP_001045447.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_1750 ABC glutamate/glutamine/aspartate/asparagine transporter, ATPase subunit BztD
YP_001045448.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr2913 probable ABC transporter permease protein
YP_001045449.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpa:BPP3974 putative amino acid ABC transporter permease protein
YP_001045450.1	SMART: extracellular solute-binding protein, family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein
YP_001045451.1	KEGG: rru:Rru_A1613 cystathionine beta-lyase; TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_001045452.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: jan:Jann_1244 transcriptional regulator, GntR family
YP_001045454.1	KEGG: rru:Rru_A2387 ABC transporter, periplasmic substrate-binding protein, putative
YP_001045455.1	PFAM: ABC-3 protein; KEGG: psb:Psyr_1949 ABC-3
YP_001045456.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_33550 putative ATP-binding component of ABC transporter
YP_001045457.1	PFAM: periplasmic solute binding protein; KEGG: pst:PSPTO_2141 cation ABC transporter, periplasmic cation-binding protein
YP_001045458.1	KEGG: pae:PA2406 hypothetical protein
YP_001045459.1	KEGG: pau:PA14_33580 hypothetical protein
YP_001045460.1	KEGG: psp:PSPPH_1920 hypothetical protein
YP_001045461.1	KEGG: pfl:PFL_0985 hypothetical protein
YP_001045462.1	PFAM: PepSY-associated TM helix domain protein; KEGG: xcv:XCV0278 hypothetical protein
YP_001045463.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; KEGG: nwi:Nwi_1732 TonB-dependent siderophore receptor
YP_001045464.1	PFAM: FecR protein; KEGG: rru:Rru_A1439 putative FecR
YP_001045465.1	PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpc:RPC_2994 sigma-24 (FecI-like)
YP_001045466.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: reh:H16_B1722 transcriptional regulator
YP_001045467.1	PFAM: transcriptional regulator TrmB; KEGG: bbr:BB3556 putative transcriptional regulator
YP_001045468.1	KEGG: bxe:Bxe_A2050 putative tricarboxylic transporter, TctA (12TM)subunit
YP_001045469.1	PFAM: protein of unknown function DUF453; KEGG: bbr:BB3558 hypothetical protein
YP_001045470.1	PFAM: MmgE/PrpD family protein; KEGG: bbr:BB3562 hypothetical protein
YP_001045471.1	PFAM: Chromate transporter; KEGG: bch:Bcen2424_3011 chromate transporter
YP_001045472.1	PFAM: Chromate transporter; KEGG: rpa:RPA3497 possible chromate transporter related to ChrA
YP_001045473.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB3563 putative ATP-binding protein of a transporter
YP_001045474.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB3564 probable inner membrane component of binding-protein-dependent transport system
YP_001045475.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB3565 probable inner membrane component of binding-protein-dependent transport system
YP_001045476.1	PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: mlo:mlr4742 2-dehydro-3-deoxygalactonate kinase
YP_001045477.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism
YP_001045478.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: ilo:IL0306 transcriptional regulator, FadR family
YP_001045479.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_001045480.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sil:SPOA0333 TRAP dicarboxylate transporter, DctM subunit
YP_001045481.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: sil:SPOA0334 TRAP dicarboxylate family transporter, DctQ subunit
YP_001045482.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sil:SPOA0335 TRAP dicarboxylate family transporter, DctP subunit
YP_001045483.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Methyltransferase type 11; KEGG: bja:blr5278 IdnD L-idonate 5-dehydrogenase
YP_001045484.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: atc:AGR_C_2598 probable gluconate dehydrogenase
YP_001045485.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: bja:blr5276 hypothetical protein
YP_001045486.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: sme:SMb20510 probable galactonate dehydratase protein
YP_001045488.1	PFAM: Animal haem peroxidase; KEGG: rde:RD1_1072 putative cyclooxygenase
YP_001045489.1	KEGG: bja:bll0020 hypothetical protein
YP_001045492.1	catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
YP_001045493.1	PFAM: FAD linked oxidase domain protein; KEGG: mlo:mlr7184 hypothetical protein
YP_001045494.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rle:pRL120182 putative alcohol dehydrogenase
YP_001045495.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rle:pRL120176 putative enoyl-CoA hydratase
YP_001045496.1	PFAM: AMP-dependent synthetase and ligase; KEGG: psb:Psyr_2726 feruloyl-CoA synthase
YP_001045497.1	PFAM: regulatory protein GntR, HTH; protein of unknown function UPF0074; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: rle:pRL120181 putative GntR family transcriptional regulator
YP_001045498.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rle:pRL120172 putative substrate-binding component of ABC transporter
YP_001045499.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_4419 ABC transporter related
YP_001045500.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120170 putative permease component of ABC transporter
YP_001045501.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120169 putative permease component of ABC transporter
YP_001045502.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: mes:Meso_3619 short-chain dehydrogenase/reductase SDR
YP_001045503.1	PFAM: Transketolase, central region; Transketolase domain protein; KEGG: mes:Meso_3618 transketolase, central region
YP_001045504.1	PFAM: Transketolase domain protein; KEGG: mes:Meso_3617 transketolase-like
YP_001045505.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mes:Meso_3616 short-chain dehydrogenase/reductase SDR
YP_001045506.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: mes:Meso_3615 TRAP dicarboxylate transporter, DctM subunit
YP_001045507.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mes:Meso_3614 TRAP dicarboxylate transporter, DctP subunit
YP_001045508.1	PFAM: regulatory proteins, IclR; KEGG: mes:Meso_3613 transcriptional regulator, IclR family
YP_001045509.1	KEGG: mes:Meso_3612 hypothetical protein
YP_001045510.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: mes:Meso_3611 molybdopterin oxidoreductase
YP_001045511.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_1715 transcriptional regulator, GntR family
YP_001045512.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_001045513.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_04273 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
YP_001045514.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: hch:HCH_04274 TRAP-type mannitol/chloroaromatic compound transport system, small permease component
YP_001045515.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: hch:HCH_04275 TRAP-type mannitol/chloroaromatic compound transport system, large permease component
YP_001045516.1	PFAM: cobalamin B12-binding domain protein; KEGG: nca:Noca_2128 cobalamin B12-binding domain protein
YP_001045517.1	KEGG: rru:Rru_A0790 phenylacetate--CoA ligase
YP_001045518.1	KEGG: ade:Adeh_1649 LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase
YP_001045519.1	KEGG: pab:PAB1800 methylmalonyl-CoA mutase, subunit alpha, N-terminus; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase
YP_001045521.1	KEGG: aeh:Mlg_0205 transferase hexapeptide repeat containing protein
YP_001045522.1	TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: psp:PSPPH_4096 ATP:cob(I)alamin adenosyltransferase, putative
YP_001045523.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sil:SPOA0344 transcriptional regulator, LysR family
YP_001045524.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: bca:BCE_4826 hypothetical protein
YP_001045525.1	PFAM: protein of unknown function DUF1089; KEGG: mlo:mll3441 hypothetical protein
YP_001045526.1	PFAM: glycosyl transferase, group 1; KEGG: rde:RD1_2341 glycosyltransferase, putative
YP_001045527.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_2342 ABC transporter, permease protein, putative
YP_001045528.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: jan:Jann_0307 ABC transporter related
YP_001045529.1	KEGG: rde:RD1_2344 hypothetical protein
YP_001045530.1	KEGG: pde:Pden_4358 sulfatase
YP_001045531.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rde:RD1_2347 hypothetical protein
YP_001045532.1	PFAM: cytochrome B561; KEGG: jan:Jann_0302 cytochrome b561
YP_001045533.1	TIGRFAM: 4-coumarate--CoA ligase; KEGG: ilo:IL2386 4-coumarate-CoA ligase, putative
YP_001045536.1	TIGRFAM: photoactive yellow protein; KEGG: ilo:IL2385 photoactive yellow protein
YP_001045538.1	KEGG: gox:GOX0533 hypothetical protein
YP_001045539.1	PFAM: protein of unknown function DUF305; KEGG: sde:Sde_1942 hypothetical protein
YP_001045540.1	PFAM: Cadherin; KEGG: ret:RHE_CH01374 hypothetical protein
YP_001045541.1	PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: sit:TM1040_0080 cobalamin synthesis protein, P47K
YP_001045542.1	PFAM: sugar transferase; KEGG: ret:RHE_CH01359 putative sugar transferase involved in lipopolysaccharide synthesis, UDP-galactose-lipid carriertransferase protein
YP_001045543.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rle:pRL90147 putative epimerase
YP_001045544.1	KEGG: rle:pRL90148 hypothetical protein
YP_001045545.1	PFAM: glycosyl transferase, family 8; KEGG: bsu:BG10558 general stress protein A
YP_001045546.1	PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: nha:Nham_3039 polysaccharide biosynthesis protein
YP_001045548.1	SMART: Parallel beta-helix repeat; KEGG: rle:pRL90140 putative calcium-binding hemolysin-like protein
YP_001045549.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: mag:amb0106 acetyltransferase
YP_001045550.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rle:pRL90151 putative GFO/IDH/MocA family oxidoreductase
YP_001045551.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rle:pRL90152 putative pleiotropic regulator
YP_001045552.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: nha:Nham_3036 NAD-dependent epimerase/dehydratase
YP_001045553.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ret:RHE_CH01368 probable aminotransferase protein (involved in cell wall biogenesis)
YP_001045554.1	PFAM: lipopolysaccharide biosynthesis; SMART: AAA ATPase; KEGG: rle:pRL90134 putative transmembrane polysaccaride biosynthesis protein
YP_001045555.1	PFAM: glycosyl transferase, group 1; KEGG: ret:RHE_CH01352 probable glycosyltransferase protein
YP_001045556.1	PFAM: glycosyl transferase, group 1; KEGG: rle:pRL90136 putative glycosyl transferase
YP_001045557.1	PFAM: polysaccharide export protein; KEGG: mes:Meso_0652 polysaccharide export protein
YP_001045558.1	PFAM: O-antigen polymerase; KEGG: rle:pRL90138 putative transmembrane exopolysaccharide production protein
YP_001045559.1	TIGRFAM: methyltransferase FkbM family; KEGG: mpa:MAP0950c hypothetical protein
YP_001045560.1	TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: dge:Dgeo_2647 glycosyl transferase, WecB/TagA/CpsF family
YP_001045561.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rba:RB7482 CDP-tyvelose epimerase
YP_001045562.1	PFAM: glycosyl transferase, group 1; KEGG: hne:HNE_1287 hypothetical protein
YP_001045563.1	PFAM: regulatory protein, LuxR; KEGG: bmb:BruAb2_0786 transcriptional regulator, LuxR family
YP_001045564.1	KEGG: ace:Acel_1935 acetyltransferase (the isoleucine patch superfamily)
YP_001045566.1	PFAM: regulatory protein, MarR; KEGG: pde:Pden_2677 transcriptional regulator, MarR family
YP_001045567.1	PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMc00563 putative transport protein transmembrane
YP_001045568.1	PFAM: secretion protein HlyD family protein; KEGG: pde:Pden_2675 secretion protein HlyD family protein
YP_001045569.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_3424 hypothetical protein
YP_001045570.1	PFAM: IS66 Orf2 family protein; KEGG: rsp:RSP_4156 transposase, IS66 Orf2
YP_001045571.1	PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gme:Gmet_0101 radical SAM
YP_001045572.1	PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: xcv:XCV0270 putative aminopeptidase precursor
YP_001045573.1	PFAM: nitroreductase; KEGG: tko:TK0840 NAD(P)H-flavin oxidoreductase
YP_001045574.1	TIGRFAM: uncharacterized domain; PFAM: protein of unknown function DUF181; KEGG: sat:SYN_00274 fatty acid binding protein
YP_001045575.1	KEGG: pde:Pden_4197 UBA/ThiF-type NAD/FAD binding protein
YP_001045578.1	PFAM: Radical SAM domain protein; KEGG: mca:MCA0891 hypothetical protein
YP_001045579.1	PFAM: DNA repair protein RadC; KEGG: rde:RD1_3690 DNA repair protein RadC
YP_001045580.1	PFAM: protein of unknown function DUF1330; KEGG: bur:Bcep18194_B2715 protein of unknown function DUF1330
YP_001045581.1	PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rde:RD1_3542 ATP-dependent DNA helicase, UvrD/REP family domain
YP_001045582.1	KEGG: tfu:Tfu_0899 similar to V8-like Glu-specific endopeptidase
YP_001045584.1	PFAM: transposase, IS4 family protein; KEGG: pde:Pden_2404 hypothetical protein
YP_001045585.1	KEGG: gox:GOX2571 hypothetical protein
YP_001045586.1	KEGG: cpf:CPF_1497 ATPase domain protein
YP_001045587.1	KEGG: rde:RD1_C0006 mobilization protein
YP_001045588.1	PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: bca:BCE_1587 sensor histidine kinase
YP_001045591.1	PFAM: Integrase, catalytic region; KEGG: rsp:RSP_1966 possible ISSod13, transposase
YP_001045592.1	KEGG: nwi:Nwi_0831 phage integrase
YP_001045593.1	KEGG: sil:SPOA0091 IS3 family transposase orfA
YP_001045594.1	PFAM: HpcH/HpaI aldolase; KEGG: rsp:RSP_3014 putative aldolase protein
YP_001045595.1	PFAM: protein of unknown function DUF849; KEGG: rsp:RSP_3015 hypothetical protein
YP_001045596.1	KEGG: rsp:RSP_3016 possible phenol degradation enzyme
YP_001045597.1	PFAM: flavin reductase domain protein, FMN-binding; KEGG: rsp:RSP_3017 nitrilotriacetate monooxygenase
YP_001045598.1	PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rsp:RSP_3018 putative acyl-CoA dehydrogenase
YP_001045599.1	KEGG: rsp:RSP_3019 putative hydrolase
YP_001045600.1	KEGG: rsp:RSP_3020 hypothetical protein
YP_001045601.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rsp:RSP_3021 putative catechol 2,3-dioxygenase
YP_001045602.1	PFAM: regulatory protein, TetR; KEGG: rsp:RSP_3022 transcriptional regulator, TetR family
YP_001045603.1	KEGG: rsp:RSP_3023 hypothetical protein
YP_001045604.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: rsp:RSP_3025 possible NAD(P)H oxidoreductase
YP_001045605.1	activator of 3-phenylpropionic acid catabolism
YP_001045606.1	PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rsp:RSP_3026 transcriptional regulator, MocR family
YP_001045607.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rsp:RSP_3027 RdxA, iron-sulfur cluster-binding protein
YP_001045608.1	catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine
YP_001045609.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_3029 transcriptional regulator, GntR family
YP_001045610.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3030 ABC peptide/opine transporter, inner membrane subunit
YP_001045611.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3031 ABC peptide/opine transporter, inner membrane subunit
YP_001045612.1	KEGG: rsp:RSP_3032 ABC peptide/opine transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_001045613.1	KEGG: rsp:RSP_3033 ABC peptide/opine transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_001045614.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rsp:RSP_3034 ABC peptide/opine transporter, periplasmic substrate-binding protein
YP_001045615.1	PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: rsp:RSP_3035 putative transporter, major facilitator superfamily (MFS)
YP_001045616.1	PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: rsp:RSP_3036 hypothetical protein
YP_001045617.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_3037 putative short-chain dehydrogenase/reductase
YP_001045618.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3038 ABC permidine/putrescine transporter, inner membrane subunit
YP_001045619.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3039 ABC permidine/putrescine transporter, inner membrane subunit
YP_001045620.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_3040 ABC permidine/putrescine transporter, periplasmic substrate-binding protein
YP_001045621.1	KEGG: rsp:RSP_3041 ABC permidine/putrescine transporter, ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase
YP_001045622.1	PFAM: regulatory protein, LuxR; KEGG: rsp:RSP_3042 DMSO reductase regulatory protein DorX
YP_001045623.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; Hpt domain protein; KEGG: rsp:RSP_3044 DMSO/TMAO-sensor hybrid histidine kinase
YP_001045624.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rsp:RSP_3045 DMSO/TMAO-two component transcriptional regulator, winged helix family
YP_001045625.1	TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: rsp:RSP_3046 DMSO/TMAO pentaheme cytochrome c subunit
YP_001045626.1	PFAM: cytoplasmic chaperone TorD family protein; KEGG: rsp:RSP_3047 DMSO-membrane protein
YP_001045627.1	KEGG: rsp:RSP_3048 DMSO/TMAO-reductase; TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductases; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region
YP_001045628.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: rsp:RSP_3049 molybdenum cofactor biosynthesis protein
YP_001045629.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_001045630.1	PFAM: protein of unknown function DUF839; KEGG: rsp:RSP_3051 putative phosphatase
YP_001045631.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_3052 transcriptional regulator, LysR family
YP_001045632.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rsp:RSP_3053 possible dioxygenase/glyoxalase family protein
YP_001045633.1	PFAM: phospholipase/Carboxylesterase; KEGG: rsp:RSP_3054 hypothetical protein
YP_001045634.1	PFAM: SH3, type 3 domain protein; KEGG: rsp:RSP_6161 hypothetical protein
YP_001045635.1	PFAM: regulatory protein, MarR; KEGG: rsp:RSP_3055 transcriptional regulator, MarR family
YP_001045636.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rsp:RSP_3056 TonB dependent-iron siderophore receptor
YP_001045637.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3057 ABC proline/glycine betaine transporter, ATPase subunit
YP_001045638.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3058 ABC proline/glycine betaine transporter, inner membrane subunit
YP_001045639.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rsp:RSP_3059 ABC proline/glycine betaine transporter, periplasmic substrate-binding protein
YP_001045640.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: rsp:RSP_3060 possible O-acetylserine synthase
YP_001045641.1	KEGG: rsp:RSP_3061 hypothetical protein
YP_001045642.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_3062 3-oxoacyl-(acyl-carrier-protein) reductase
YP_001045643.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rsp:RSP_3063 AMP-dependent synthetase and ligase
YP_001045644.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: rsp:RSP_3064 transcriptional regulator, DeoR family
YP_001045645.1	PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_3065 putative transporter, major facilitator superfamily (MFS)
YP_001045646.1	KEGG: rsp:RSP_3067 hypothetical protein
YP_001045647.1	KEGG: rsp:RSP_3068 hypothetical protein
YP_001045648.1	PFAM: NADPH-dependent FMN reductase; KEGG: rsp:RSP_3069 NADPH-dependent FMN reductase
YP_001045649.1	PFAM: MOFRL domain protein; KEGG: rsp:RSP_3071 putative hydroxypyruvate reductase/glycerate kinase
YP_001045650.1	PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: rsp:RSP_3070 hypothetical protein
YP_001045651.1	KEGG: rsp:RSP_3072 putative L-sorbosone dehydrogenase
YP_001045652.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rsp:RSP_3073 ErfK/YbiS/YcfS/YnhG family protein
YP_001045653.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_001045654.1	PFAM: protein of unknown function DUF323; KEGG: rsp:RSP_3075 hypothetical protein
YP_001045655.1	KEGG: rsp:RSP_3076 hypothetical protein
YP_001045656.1	PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: rsp:RSP_3077 hypothetical protein
YP_001045657.1	KEGG: rsp:RSP_3078 hypothetical protein
YP_001045658.1	PFAM: periplasmic binding protein; KEGG: rsp:RSP_3079 ABC Fe+3 siderophore transporter, periplasmic substrate-binding protein
YP_001045659.1	TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: rsp:RSP_3080 choline/carnitine/betaine transporter, BCCT family
YP_001045660.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3081 ABC multidrug efflux transporter, fused ATPase and inner membrane subunits
YP_001045661.1	KEGG: rsp:RSP_3082 hypothetical protein
YP_001045662.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rsp:RSP_3083 methyl accepting chemotaxis protein
YP_001045663.1	KEGG: rsp:RSP_3084 hypothetical protein
YP_001045664.1	PFAM: sulfatase; protein of unknown function DUF1705; KEGG: rsp:RSP_3085 hypothetical protein
YP_001045665.1	PFAM: diacylglycerol kinase; KEGG: rsp:RSP_3087 diacylglycerol kinase
YP_001045666.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_3086 periplasmic sensor signal transduction histidine kinase
YP_001045667.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rsp:RSP_3088 two component transcriptional regulator, winged helix family
YP_001045668.1	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: rsp:RSP_3089 hypothetical protein
YP_001045669.1	TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein-like; KEGG: rsp:RSP_3090 putative alkylphosphonate uptake protein, PhnA
YP_001045670.1	KEGG: rsp:RSP_3091 conserved hypothetical protein
YP_001045671.1	KEGG: rsp:RSP_3092 hypothetical protein
YP_001045672.1	PFAM: protein of unknown function UPF0005; KEGG: rsp:RSP_3093 predicted integral membrane protein
YP_001045673.1	KEGG: rsp:RSP_3094 putative transmembrane anti-sigma factor
YP_001045674.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; possibly involved in prevention of copper toxicity
YP_001045675.1	KEGG: rsp:RSP_3096 hypothetical protein
YP_001045676.1	PFAM: cytochrome c oxidase, subunit I; KEGG: rsp:RSP_3097 QoxA, quinol oxidase subunit I
YP_001045677.1	PFAM: cytochrome c oxidase, subunit II; KEGG: rsp:RSP_3098 QoxB, quinol oxidase subunit II
YP_001045678.1	KEGG: rpb:RPB_0157 hypothetical protein
YP_001045679.1	KEGG: rsp:RSP_3100 hypothetical protein
YP_001045680.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; KEGG: rsp:RSP_3101 periplasmic sensor diguanylate cyclase/phosphodiesterase
YP_001045682.1	PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: rsp:RSP_3102 putative sec-independent protein translocase protein, TatE
YP_001045684.1	PFAM: cyclase/dehydrase; KEGG: rsp:RSP_3103 hypothetical protein
YP_001045685.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsp:RSP_3104 putative glutathione-dependent formaldehyde dehydrogenase
YP_001045686.1	KEGG: rsp:RSP_3105 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_001045687.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rsp:RSP_3106 cation efflux transporter, CDF family
YP_001045688.1	PFAM: protein of unknown function DUF156; KEGG: rsp:RSP_3107 hypothetical protein
YP_001045689.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rsp:RSP_3108 putative methyl accepting chemotaxis protein
YP_001045690.1	PFAM: regulatory protein, MarR; KEGG: rsp:RSP_3109 transcriptional regulator, MarR family
YP_001045691.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rsp:RSP_3110 putative glutathione S-transferase
YP_001045692.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rsp:RSP_3111 putative glutathione S-transferase
YP_001045693.1	PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: rsp:RSP_3112 hypothetical protein
YP_001045694.1	catalyzes the oxidative deamination of D-amino acids
YP_001045695.1	KEGG: rsp:RSP_3114 hypothetical protein
YP_001045696.1	PFAM: Transglycosylase-associated protein; KEGG: rsp:RSP_3115 hypothetical protein
YP_001045697.1	PFAM: protein of unknown function UPF0118; KEGG: rsp:RSP_3116 conserved hypothetical membrane/transport protein
YP_001045699.1	KEGG: rsp:RSP_3117 hypothetical protein
YP_001045700.1	KEGG: rsp:RSP_3118 hypothetical protein
YP_001045701.1	PFAM: protein of unknown function DUF1234; KEGG: rsp:RSP_3119 conserved hypothetical protein / putative esterase
YP_001045702.1	PFAM: DoxX family protein; KEGG: rsp:RSP_3120 hypothetical protein
YP_001045703.1	KEGG: rsp:RSP_6238 hypothetical protein
YP_001045704.1	KEGG: rsp:RSP_3122 putative glutathione S-transferase
YP_001045705.1	PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rsp:RSP_3123 hypothetical protein
YP_001045706.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_3124 transcriptional regulator, LysR family
YP_001045707.1	SMART: regulatory protein, ArsR; KEGG: rsp:RSP_3125 transcriptional regulator, ArsR familyy
YP_001045708.1	TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: rsp:RSP_3126 arsenite efflux pump, ACR3 family
YP_001045709.1	TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: rsp:RSP_3127 putative arsenate reductase
YP_001045710.1	KEGG: rsp:RSP_3128 hypothetical protein
YP_001045714.1	PFAM: Forkhead-associated protein; KEGG: sco:SCO6079 hypothetical protein
YP_001045715.1	KEGG: jan:Jann_1605 FHA domain containing protein
YP_001045716.1	PFAM: protein phosphatase 2C domain protein; Stage II sporulation E family protein; KEGG: jan:Jann_1606 protein serine/threonine phosphatases
YP_001045717.1	PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rsp:RSP_3129 serine/threonine protein kinase
YP_001045718.1	PFAM: Forkhead-associated protein; peptidase S1 and S6, chymotrypsin/Hap; KEGG: rsp:RSP_3130 putative serine protease
YP_001045719.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3131 ABC (antimicrobial peptide) transporter, ATPase subunit
YP_001045720.1	KEGG: rsp:RSP_3132 putative membrane protein
YP_001045721.1	PFAM: protein of unknown function DUF323; KEGG: rsp:RSP_3133 hypothetical protein
YP_001045722.1	KEGG: rsp:RSP_6164 hypothetical protein
YP_001045723.1	PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rsp:RSP_3134 serine/threonine protein kinase
YP_001045724.1	KEGG: rsp:RSP_3135 PpkA-related protein
YP_001045725.1	PFAM: Carbohydrate-binding, CenC domain protein domain protein; protein of unknown function DUF1593; KEGG: rsp:RSP_3136 hypothetical protein
YP_001045726.1	PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_3137 hypothetical protein
YP_001045727.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rsp:RSP_3138 Smp-30/Cgr1 family protein
YP_001045728.1	KEGG: rsp:RSP_3140 hypothetical protein
YP_001045729.1	PFAM: protein of unknown function DUF485; KEGG: rsp:RSP_3141 hypothetical protein
YP_001045730.1	member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake
YP_001045731.1	PFAM: NIPSNAP family containing protein; KEGG: rsp:RSP_3143 hypothetical protein
YP_001045732.1	PFAM: conserved hypothetical protein 698; KEGG: rsp:RSP_3144 hypothetical protein
YP_001045733.1	PFAM: Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: rsp:RSP_3145 putative tartrate dehydratase beta subunit
YP_001045734.1	TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; KEGG: rsp:RSP_3146 putative tartrate dehydratase alpha subunit
YP_001045735.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: rsp:RSP_3147 putative succinate dehydrogenase/fumarate reductase, flavoprotein subunit
YP_001045736.1	PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: rsp:RSP_3148 putative succinate dehydrogenase cytochrome b-556 subunit
YP_001045737.1	KEGG: rsp:RSP_3149 putative succinate dehydrogenase membrane anchor
YP_001045738.1	KEGG: rsp:RSP_3150 succinate dehydrogenase/fumarate reductase Fe-S protein subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin
YP_001045739.1	KEGG: rsp:RSP_3151 ABC nitrate/sulfonate/bicarbonate transporter family, periplasmic substrate-binding protein
YP_001045740.1	KEGG: rsp:RSP_3152 ABC nitrate/sulfonate/bicarbonate transporter family, periplasmic substrate-binding protein
YP_001045741.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3153 ABC nitrate/sulfonate/bicarbonate transporter family, inner membrane subunit
YP_001045742.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3154 ABC nitrate/sulfonate/bicarbonate transporter family, ATPase subunit
YP_001045743.1	PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rsp:RSP_3155 thiamine pyrophosphate-requiring enzyme
YP_001045744.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_6165 transcriptional regulator, LysR family
YP_001045745.1	PFAM: protein of unknown function DUF81; KEGG: rsp:RSP_6166 hypothetical membrane protein
YP_001045746.1	PFAM: ABC-2 type transporter; KEGG: rsp:RSP_3157 ABC transporter, inner membrane subunit
YP_001045747.1	PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: rsp:RSP_3159 ABC transporter, 2 fused ATPase and 1 inner membrane subunits
YP_001045748.1	PFAM: secretion protein HlyD family protein; KEGG: rsp:RSP_3160 membrane fusion protein, HlyD family
YP_001045749.1	PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: rsp:RSP_3161 hypothetical protein
YP_001045750.1	KEGG: rsp:RSP_3162 hypothetical protein
YP_001045751.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rsp:RSP_3163 probable oxidoreductase
YP_001045752.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rsp:RSP_3164 ferredoxin like protein
YP_001045753.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_3165 transcriptional regulator, GntR family
YP_001045754.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3166 ABC transporter, inner membrane subunit
YP_001045755.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3167 ABC transporter, ATPase subunit
YP_001045756.1	PFAM: WD-40 repeat protein; KEGG: rsp:RSP_3168 ABC transporter, periplasmic binding protein
YP_001045757.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rsp:RSP_3169 FAA-hydrolase-family protein
YP_001045758.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: rsp:RSP_3170 demethylmenaquinone methyltransferase
YP_001045759.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rsp:RSP_3171 3-hydroxyisobutyrate dehydrogenase
YP_001045760.1	PFAM: protein of unknown function DUF81; KEGG: rsp:RSP_3172 hypothetical protein
YP_001045761.1	PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: rsp:RSP_3174 nucleoside transporter, NCS1 family
YP_001045762.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rsp:RSP_3175 hypothetical protein
YP_001045763.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_3176 enoyl-(acyl-carrier protein) reductase (NADH)
YP_001045764.1	PFAM: beta-ketoacyl synthase; KEGG: rsp:RSP_3177 3-oxoacyl-(acyl-carrier-protein) synthase
YP_001045765.1	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP
YP_001045766.1	PFAM: ferric-uptake regulator; KEGG: rsp:RSP_3179 probable ferric-uptake regulator
YP_001045767.1	PFAM: transglutaminase domain protein; KEGG: rsp:RSP_3180 transglutaminase-like enzyme
YP_001045768.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rsp:RSP_3181 putative fatty-acyl-CoA racemase; CoA-transferase family III
YP_001045769.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rsp:RSP_3182 acyl-CoA dehydrogenase
YP_001045770.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rsp:RSP_3183 3-hydroxyacyl-CoA dehydrogenase type II
YP_001045771.1	KEGG: rsp:RSP_3184 putative thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase
YP_001045772.1	responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid
YP_001045773.1	KEGG: rsp:RSP_3186 hypothetical protein
YP_001045774.1	KEGG: rsp:RSP_6237 hypothetical protein
YP_001045775.1	involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans
YP_001045776.1	PFAM: ApbE family lipoprotein; KEGG: rsp:RSP_3188 ApbE family protein
YP_001045777.1	PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: rsp:RSP_3188 ApbE family protein
YP_001045778.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rsp:RSP_3189 4Fe-4S ferredoxin
YP_001045779.1	PFAM: ferredoxin; KEGG: rsp:RSP_3190 2Fe-2S ferredoxin
YP_001045780.1	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: rsp:RSP_3191 flavodoxin
YP_001045781.1	TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: rsp:RSP_3192 predicted NADH-ubiquinone oxidoreductase; subunit RnfA
YP_001045782.1	TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: rsp:RSP_3193 electron transport complex protein RnfB
YP_001045783.1	TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rsp:RSP_3194 4Fe-4S ferredoxin, RnfC
YP_001045784.1	TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: rsp:RSP_3195 RnfD protein
YP_001045785.1	TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: rsp:RSP_3196 electron transport complex, RnfABCDGE type, G subunit
YP_001045786.1	in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase
YP_001045787.1	PFAM: protein of unknown function UPF0125; KEGG: rsp:RSP_3198 probable RnfH protein
YP_001045788.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsp:RSP_3199 hypothetical protein
YP_001045789.1	KEGG: rsp:RSP_3200 molecular chaperone, DnaK
YP_001045790.1	PFAM: aldo/keto reductase; KEGG: rsp:RSP_3201 putative oxidoreductase
YP_001045791.1	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: rsp:RSP_3202 transcriptional regulator, AraC family
YP_001045792.1	PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: rsp:RSP_3203 transcriptional regulator, AraC family
YP_001045793.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rsp:RSP_3204 putative oxidoreductase
YP_001045794.1	PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: rsp:RSP_3205 putative oxidoreductase subunit
YP_001045795.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rsp:RSP_3206 putative xanthine dehydrogenase
YP_001045796.1	KEGG: rsp:RSP_6168 ABC cobalt transporter, periplasmic binding protein CbiN
YP_001045797.1	catalyzes the ATP-dependent transport of cobalt
YP_001045798.1	KEGG: rsp:RSP_3208 putative CbiL protein
YP_001045799.1	TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: rsp:RSP_3209 ABC cobalt transporter, inner membrane subunit, CbiQ
YP_001045800.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3211 ABC cobalt transporter, ATPase subunit, CbiO
YP_001045801.1	TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: rsp:RSP_3210 quinol oxidase subunit II QxtB
YP_001045802.1	PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: rsp:RSP_3212 quinol oxidase subunit I QxtA
YP_001045803.1	KEGG: rsp:RSP_3213 hypothetical protein
YP_001045804.1	KEGG: rsp:RSP_3215 hypothetical protein
YP_001045805.1	PFAM: metallophosphoesterase; KEGG: rsp:RSP_3216 putative DNA repair exonuclease
YP_001045806.1	TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: rsp:RSP_3218 putative oxidoreductase NAD protein
YP_001045807.1	KEGG: rsp:RSP_6169 hypothetical protein
YP_001045808.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Cache domain protein; KEGG: rsp:RSP_3217 cache sensor protein
YP_001045809.1	PFAM: transport system permease protein; KEGG: rsp:RSP_3220 ABC ferric siderophore transporter, inner membrane subunit
YP_001045810.1	PFAM: transport system permease protein; KEGG: rsp:RSP_3221 ABC ferric siderophore transporter, inner membrane subunit
YP_001045811.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3222 ABC ferric siderophore transporter, ATPase subunit
YP_001045812.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: atc:AGR_L_1858 outer membrane protein irgA precursor
YP_001045813.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; KEGG: rsp:RSP_3225 periplasmic sensor signal transduction histidine kinase
YP_001045814.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_001045815.1	TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: rsp:RSP_3227 lysine 2,3-aminomutase
YP_001045816.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: rsp:RSP_3228 predicted mannose-6-phosphate isomerase
YP_001045817.1	TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rsp:RSP_3229 membrane-bound lytic murein transglycosylase B
YP_001045818.1	KEGG: rsp:RSP_3230 hypothetical protein
YP_001045819.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rsp:RSP_3231 ABC peptide transporter, periplasmic binding protein
YP_001045820.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3232 ABC peptide transporter, inner membrane subunit
YP_001045821.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3233 ABC peptide transporter, inner membrane subunit
YP_001045822.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_3235 ABC peptide transporter, ATPase subunit
YP_001045823.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3236 ABC peptide transporter, ATPase subunit
YP_001045824.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rsp:RSP_3237 lactoylglutathione lyase
YP_001045825.1	KEGG: rsp:RSP_3238 hypothetical protein
YP_001045826.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_3240 periplasmic sensor signal transduction histidine kinase
YP_001045827.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rsp:RSP_3241 two-component transcriptional regulator, winged helix family
YP_001045828.1	TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rsp:RSP_3242 putative trypsin-like serine protease
YP_001045830.1	PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_3245 possible transporter, major facilitator superfamily (MFS)
YP_001045831.1	intracellular enzymes acting on low molecular weight D-amino acid amides, esters and oligopeptides containing D-amino acids; these proteases release the N-terminal D-amino acid from a peptide, and show higher affinity for D-Ala, D-Ser or D-Thr; no preference for the stereochemistry of the second amino acid
YP_001045832.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rsp:RSP_3248 ABC peptide transporter, periplasmic binding protein
YP_001045833.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_3249 ABC peptide transporter, duplicated ATPase domains
YP_001045834.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3250 ABC peptide transporter, inner membrane subunit
YP_001045835.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3251 ABC peptide transporter, inner membrane subunit
YP_001045836.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_3252 ABC peptide transporter, fused ATPase domains
YP_001045837.1	PFAM: Acetamidase/Formamidase; KEGG: rsp:RSP_3253 predicted acetamidase / formamidase
YP_001045838.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rsp:RSP_3255 ABC peptide transporter, periplasmic binding protein
YP_001045839.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3257 ABC peptide transporter, inner membrane subunit
YP_001045840.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3258 ABC peptide transporter, inner membrane subunit
YP_001045841.1	PFAM: ANTAR domain protein; KEGG: rsp:RSP_3259 transcription antitermination protein
YP_001045842.1	KEGG: rsp:RSP_3260 putative negative amidase regulator, AmiC
YP_001045843.1	PFAM: aminotransferase class-III; KEGG: rsp:RSP_3261 hypothetical protein
YP_001045844.1	PFAM: thioesterase superfamily protein; KEGG: rsp:RSP_3262 putative thioesterase
YP_001045845.1	PFAM: blue (type 1) copper domain protein; KEGG: rsp:RSP_3263 putative copper binding protein
YP_001045846.1	PFAM: cytochrome c, class I; KEGG: rsp:RSP_3264 probable C-type cytochrome
YP_001045847.1	KEGG: rsp:RSP_3265 hypothetical protein
YP_001045848.1	KEGG: rsp:RSP_6171 hypothetical protein
YP_001045849.1	PFAM: Inositol phosphatase/fructose-1,6-bisphosphatase; KEGG: rsp:RSP_3266 fructose-1,6-bisphosphatase
YP_001045850.1	PFAM: phosphoribulokinase/uridine kinase; KEGG: rsp:RSP_3267 phosphoribulokinase
YP_001045851.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_001045852.1	KEGG: rsp:RSP_3269 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase
YP_001045853.1	class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis
YP_001045854.1	catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation
YP_001045855.1	KEGG: rsp:RSP_3272 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase
YP_001045856.1	PFAM: ABC-2 type transporter; KEGG: rsp:RSP_3273 ABC multidrug/carbohydrate efflux transporter, inner membrane subunit
YP_001045857.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3274 ABC multidrug/carbohydrate efflux transporter, ATPase subunit
YP_001045858.1	PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rsp:RSP_3275 MoxR-like ATPase
YP_001045859.1	KEGG: rsp:RSP_3276 hypothetical protein
YP_001045860.1	KEGG: rsp:RSP_6252 hypothetical protein
YP_001045861.1	PFAM: von Willebrand factor, type A; KEGG: rsp:RSP_3278 Von Willebrand domain containing protein
YP_001045862.1	KEGG: rsp:RSP_3280 hypothetical protein
YP_001045863.1	KEGG: rsp:RSP_3281 hypothetical protein
YP_001045864.1	KEGG: rsp:RSP_3282 hypothetical protein
YP_001045865.1	PFAM: Semialdehyde dehydrogenase, NAD - binding; oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rsp:RSP_3283 myo-inositol 2-dehydrogenase
YP_001045866.1	PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rsp:RSP_3284 acetolactate synthase
YP_001045867.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rsp:RSP_3285 possible sugar phosphate isomerase/epimerase, IolE
YP_001045868.1	PFAM: Myo-inositol catabolism IolB domain protein; KEGG: rsp:RSP_3286 uncharacterized enzyme involved in inositol metabolism, IolB
YP_001045869.1	part of the UgpABCE glycerol-3-phosphate uptake system
YP_001045870.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3288 ABC glycerol-3-phosphate transporter, inner membrane subunit UgpE
YP_001045871.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3289 ABC glycerol-3-phosphate transporter, inner membrane subunit UgpA
YP_001045872.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_3290 ABC glycerol-3-phosphate transporter, periplasmic binding protein, UgpB
YP_001045873.1	PFAM: Na+/Pi-cotransporter; PhoU family protein; KEGG: rsp:RSP_3291 putative Na+/phosphate symporter
YP_001045874.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rsp:RSP_3292 glucose-methanol-choline oxidoreductase
YP_001045875.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_3293 ABC branched-chain amino acid transporter, inner membrane subunit
YP_001045876.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_3294 ABC branched-chain amino acid transporter, inner membrane subunit
YP_001045877.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3295 ABC branched-chain amino acid transporter, ATPase subunit
YP_001045878.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3296 ABC branched-chain amino acid transporter, ATPase subunit
YP_001045879.1	KEGG: rsp:RSP_3297 ABC branched-chain amino acid transporter, periplasmic binding protein
YP_001045880.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_3298 transcriptional regulator, LysR family
YP_001045881.1	KEGG: rsp:RSP_6235 hypothetical protein
YP_001045882.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: rsp:RSP_3299 TRAP-T family transporter, periplasmic binding component
YP_001045883.1	PFAM: protein of unknown function DUF1194; KEGG: rsp:RSP_6253 hypothetical protein
YP_001045884.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism
YP_001045885.1	PFAM: response regulator receiver; KEGG: rsp:RSP_3302 chemotaxis response regulator, CheY4
YP_001045886.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rsp:RSP_3303 putative methyl accepting chemotaxis protein, McpG
YP_001045887.1	KEGG: rsp:RSP_6236 hypothetical protein
YP_001045888.1	PFAM: ABC-1 domain protein; KEGG: rsp:RSP_3305 putative ubiquinol-cytochrome-c reductase assembly protein
YP_001045889.1	KEGG: rsp:RSP_3306 hypothetical protein
YP_001045890.1	PFAM: WGR domain protein; KEGG: rsp:RSP_3307 hypothetical protein
YP_001045891.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_3308 possible transporter, DME family, DMT superfamily
YP_001045892.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rsp:RSP_3309 transcriptional regulator, AraC family
YP_001045893.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: eli:ELI_13810 hypothetical oxidoreductase, short chaindehydrogenase/reductase family protein
YP_001045894.1	PFAM: regulatory protein, TetR; KEGG: rsp:RSP_3317 transcriptional regulator, TetR family
YP_001045895.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rsp:RSP_3318 cation/multidrug efflux pump, RND family
YP_001045896.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rsp:RSP_3321 cation/multidrug efflux pump, membrane-fusion protein
YP_001045897.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rsp:RSP_3322 acetoin transcriptional regulator, sigma54 specific, AcoR
YP_001045898.1	KEGG: rsp:RSP_3323 putative flavoprotein containing monooxygenase involved in K+ transport
YP_001045899.1	PFAM: regulatory protein, LuxR; KEGG: rsp:RSP_3324 transcriptional regulator, LuxR family
YP_001045900.1	PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: rsp:RSP_3325 polysaccharide export transporter, PST family
YP_001045901.1	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rsp:RSP_3326 low molecular weight phosphotyrosine protein phosphatase
YP_001045902.1	PFAM: Rhomboid family protein; KEGG: rsp:RSP_3327 possible rhomboid family membrane protein
YP_001045903.1	KEGG: rsp:RSP_3328 hypothetical protein
YP_001045904.1	PFAM: protein of unknown function DUF465; KEGG: rsp:RSP_6254 hypothetical protein
YP_001045905.1	KEGG: rsp:RSP_3329 hypothetical protein
YP_001045906.1	PFAM: Citrate transporter; TrkA-C domain protein; KEGG: rsp:RSP_3330 putative sodium/sulfate transporter, DASS family
YP_001045907.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: rsp:RSP_3331 cupin domain containg protein
YP_001045908.1	PFAM: LrgB family protein; KEGG: rsp:RSP_3332 putative transmembrane protein
YP_001045909.1	PFAM: LrgA family protein; KEGG: rsp:RSP_3333 putative holin-like protein
YP_001045910.1	PFAM: Asp/Glu racemase; KEGG: rsp:RSP_3334 HyuE hydantoin racemase
YP_001045911.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3335 ABC spermidine/putrescine transporter, inner membrane subunit
YP_001045912.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3336 ABC spermidine/putrescine transporter, inner membrane subunit
YP_001045913.1	KEGG: rsp:RSP_3337 ABC spermidine/putrescine transporter, periplasmic binding protein
YP_001045914.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_3338 ABC spermidine/putrescine transporter, ATPase subunit
YP_001045915.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_3339 transcriptional regulator, GntR family
YP_001045916.1	TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rsp:RSP_3341 hypothetical protein
YP_001045917.1	TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_3340 possible transporter, RarD, DMT superfamily