-- dump date 20140620_032850 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001989039.1 192288434 6413025 220..1638 1 NC_011004.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1638 dnaA 6413025 dnaA Rhodopseudomonas palustris TIE-1 chromosomal replication initiation protein YP_001989039.1 220 D 395960 CDS YP_001989040.1 192288435 6407643 1872..2990 1 NC_011004.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2990 6407643 Rpal_0002 Rhodopseudomonas palustris TIE-1 DNA polymerase III subunit beta YP_001989040.1 1872 D 395960 CDS YP_001989041.1 192288436 6407644 3234..4373 1 NC_011004.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4373 recF 6407644 recF Rhodopseudomonas palustris TIE-1 recombination protein F YP_001989041.1 3234 D 395960 CDS YP_001989042.1 192288437 6407645 4590..7031 1 NC_011004.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 7031 gyrB 6407645 gyrB Rhodopseudomonas palustris TIE-1 DNA gyrase subunit B YP_001989042.1 4590 D 395960 CDS YP_001989043.1 192288438 6407646 complement(7213..8331) 1 NC_011004.1 KEGG: bja:bll0339 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 8331 6407646 Rpal_0005 Rhodopseudomonas palustris TIE-1 4-hydroxyphenylpyruvate dioxygenase YP_001989043.1 7213 R 395960 CDS YP_001989044.1 192288439 6407647 8457..8936 1 NC_011004.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bja:blr0340 transcriptional regulatory protein; AsnC family transcriptional regulator 8936 6407647 Rpal_0006 Rhodopseudomonas palustris TIE-1 AsnC family transcriptional regulator YP_001989044.1 8457 D 395960 CDS YP_001989045.1 192288440 6407648 complement(8982..10430) 1 NC_011004.1 KEGG: rru:Rru_A2544 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase 10430 6407648 Rpal_0007 Rhodopseudomonas palustris TIE-1 signal transduction histidine kinase YP_001989045.1 8982 R 395960 CDS YP_001989046.1 192288441 6407649 complement(10430..10714) 1 NC_011004.1 PFAM: KaiB domain protein; KEGG: rru:Rru_A2543 KaiB; KaiB domain-containing protein 10714 6407649 Rpal_0008 Rhodopseudomonas palustris TIE-1 KaiB domain-containing protein YP_001989046.1 10430 R 395960 CDS YP_001989047.1 192288442 6407650 complement(10724..12415) 1 NC_011004.1 acts as a promotor non-specific transcription repressor; circadian clock protein KaiC 12415 6407650 Rpal_0009 Rhodopseudomonas palustris TIE-1 circadian clock protein KaiC YP_001989047.1 10724 R 395960 CDS YP_001989048.1 192288443 6407651 complement(12809..13318) 1 NC_011004.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bra:BRADO0760 transcriptional regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 13318 6407651 Rpal_0010 Rhodopseudomonas palustris TIE-1 AsnC family transcriptional regulator YP_001989048.1 12809 R 395960 CDS YP_001989049.1 192288444 6407652 complement(13458..13667) 1 NC_011004.1 KEGG: bbt:BBta_2219 hypothetical protein; hypothetical protein 13667 6407652 Rpal_0011 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989049.1 13458 R 395960 CDS YP_001989050.1 192288445 6407653 complement(13806..14054) 1 NC_011004.1 hypothetical protein 14054 6407653 Rpal_0012 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989050.1 13806 R 395960 CDS YP_001989051.1 192288446 6407654 complement(14056..14232) 1 NC_011004.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: bra:BRADO2445 nitrogen fixation protein FixS; cbb3-type cytochrome oxidase maturation protein 14232 6407654 Rpal_0013 Rhodopseudomonas palustris TIE-1 cbb3-type cytochrome oxidase maturation protein YP_001989051.1 14056 R 395960 CDS YP_001989052.1 192288447 6407655 complement(14232..16430) 1 NC_011004.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_2797 nitrogen fixation protein FixI; ATPase P 16430 6407655 Rpal_0014 Rhodopseudomonas palustris TIE-1 ATPase P YP_001989052.1 14232 R 395960 CDS YP_001989053.1 192288448 6407656 complement(16465..16965) 1 NC_011004.1 PFAM: FixH family protein; KEGG: bra:BRADO2443 nitrogen fixation protein FixH; FixH family protein 16965 6407656 Rpal_0015 Rhodopseudomonas palustris TIE-1 FixH family protein YP_001989053.1 16465 R 395960 CDS YP_001989054.1 192288449 6407657 complement(16985..18442) 1 NC_011004.1 TIGRFAM: cytochrome C oxidase accessory protein CcoG; KEGG: bbt:BBta_2795 nitrogen fixation protein; cytochrome C oxidase accessory protein CcoG 18442 6407657 Rpal_0016 Rhodopseudomonas palustris TIE-1 cytochrome C oxidase accessory protein CcoG YP_001989054.1 16985 R 395960 CDS YP_001989055.1 192288450 6407658 complement(18559..19440) 1 NC_011004.1 TIGRFAM: cytochrome C oxidase, cbb3-type, subunit III; PFAM: cytochrome C class I; KEGG: bra:BRADO2441 cytochrome-c oxidase FixP chain; cytochrome C oxidase, cbb3-type subunit III 19440 6407658 Rpal_0017 Rhodopseudomonas palustris TIE-1 cytochrome C oxidase, cbb3-type subunit III YP_001989055.1 18559 R 395960 CDS YP_001989056.1 192288451 6407659 complement(19448..19612) 1 NC_011004.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: bra:BRADO2440 cytochrome oxidase subunit, FixQ; cbb3-type cytochrome oxidase subunit 19612 6407659 Rpal_0018 Rhodopseudomonas palustris TIE-1 cbb3-type cytochrome oxidase subunit YP_001989056.1 19448 R 395960 CDS YP_001989057.1 192288452 6407660 complement(19622..20356) 1 NC_011004.1 CcoO; FixO; cbb3-type cytochrome C oxidase subunit II 20356 6407660 Rpal_0019 Rhodopseudomonas palustris TIE-1 cbb3-type cytochrome C oxidase subunit II YP_001989057.1 19622 R 395960 CDS YP_001989058.1 192288453 6407661 complement(20369..22015) 1 NC_011004.1 CcoN; FixN; cbb3-type cytochrome C oxidase subunit I 22015 6407661 Rpal_0020 Rhodopseudomonas palustris TIE-1 cbb3-type cytochrome C oxidase subunit I YP_001989058.1 20369 R 395960 CDS YP_001989059.1 192288454 6407662 complement(22326..23246) 1 NC_011004.1 KEGG: bbt:BBta_0313 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 23246 6407662 Rpal_0021 Rhodopseudomonas palustris TIE-1 2-dehydropantoate 2-reductase YP_001989059.1 22326 R 395960 CDS YP_001989060.1 192288455 6407663 complement(23320..24057) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO0329 acetoin(diacetyl) reductase (acetoin dehydrogenase) (AR) (meso-2,3-butanediol dehydrogenase); oxidoreductase, short chain dehydrogenase; short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 24057 6407663 Rpal_0022 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001989060.1 23320 R 395960 CDS YP_001989061.1 192288456 6407664 complement(24176..24778) 1 NC_011004.1 PFAM: DSBA oxidoreductase; KEGG: bja:blr0588 hypothetical protein; DSBA oxidoreductase 24778 6407664 Rpal_0023 Rhodopseudomonas palustris TIE-1 DSBA oxidoreductase YP_001989061.1 24176 R 395960 CDS YP_001989062.1 192288457 6407665 24994..25662 1 NC_011004.1 PFAM: glutathione S-transferase domain; KEGG: bja:bll0585 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 25662 6407665 Rpal_0024 Rhodopseudomonas palustris TIE-1 glutathione S-transferase domain-containing protein YP_001989062.1 24994 D 395960 CDS YP_001989063.1 192288458 6407666 complement(25778..26653) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mex:Mext_3612 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 26653 6407666 Rpal_0025 Rhodopseudomonas palustris TIE-1 short chain dehydrogenase YP_001989063.1 25778 R 395960 CDS YP_001989064.1 192288459 6407667 complement(26926..28659) 1 NC_011004.1 KEGG: nha:Nham_0191 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 28659 6407667 Rpal_0026 Rhodopseudomonas palustris TIE-1 gamma-glutamyltransferase YP_001989064.1 26926 R 395960 CDS YP_001989065.1 192288460 6407668 28765..30162 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_0192 major facilitator superfamily MFS_1; major facilitator superfamily protein 30162 6407668 Rpal_0027 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001989065.1 28765 D 395960 CDS YP_001989066.1 192288461 6407669 30377..31471 1 NC_011004.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 31471 6407669 Rpal_0028 Rhodopseudomonas palustris TIE-1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001989066.1 30377 D 395960 CDS YP_001989067.1 192288462 6407670 complement(31529..33121) 1 NC_011004.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 33121 purH 6407670 purH Rhodopseudomonas palustris TIE-1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001989067.1 31529 R 395960 CDS YP_001989068.1 192288463 6407671 complement(33307..35061) 1 NC_011004.1 PFAM: heparinase II/III family protein; KEGG: bja:blr0580 hypothetical protein; heparinase II/III family protein 35061 6407671 Rpal_0030 Rhodopseudomonas palustris TIE-1 heparinase II/III family protein YP_001989068.1 33307 R 395960 CDS YP_001989069.1 192288464 6407672 complement(35360..36712) 1 NC_011004.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: bja:blr0579 SUN protein; Fmu (Sun) domain-containing protein 36712 6407672 Rpal_0031 Rhodopseudomonas palustris TIE-1 Fmu (Sun) domain-containing protein YP_001989069.1 35360 R 395960 CDS YP_001989070.1 192288465 6407673 36865..37083 1 NC_011004.1 PFAM: protein of unknown function DUF1674; KEGG: bbt:BBta_0326 hypothetical protein; hypothetical protein 37083 6407673 Rpal_0032 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989070.1 36865 D 395960 CDS YP_001989071.1 192288466 6407674 37169..37744 1 NC_011004.1 PFAM: nuclease (SNase domain protein); KEGG: nwi:Nwi_0154 staphylococcus nuclease (SNase-like); nuclease 37744 6407674 Rpal_0033 Rhodopseudomonas palustris TIE-1 nuclease YP_001989071.1 37169 D 395960 CDS YP_001989072.1 192288467 6407675 complement(37748..38632) 1 NC_011004.1 KEGG: bra:BRADO0145 hypothetical protein; hypothetical protein 38632 6407675 Rpal_0034 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989072.1 37748 R 395960 CDS YP_001989073.1 192288468 6407676 38980..40437 1 NC_011004.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bja:blr0703 hypothetical protein; amine oxidase 40437 6407676 Rpal_0035 Rhodopseudomonas palustris TIE-1 amine oxidase YP_001989073.1 38980 D 395960 CDS YP_001989074.1 192288469 6407677 complement(40444..42855) 1 NC_011004.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 42855 pheT 6407677 pheT Rhodopseudomonas palustris TIE-1 phenylalanyl-tRNA synthetase subunit beta YP_001989074.1 40444 R 395960 CDS YP_001989075.1 192288470 6407678 complement(43000..43479) 1 NC_011004.1 PFAM: protein of unknown function DUF559; KEGG: bbt:BBta_0213 hypothetical protein; hypothetical protein 43479 6407678 Rpal_0037 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989075.1 43000 R 395960 CDS YP_001989076.1 192288471 6407679 complement(43710..44792) 1 NC_011004.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 44792 pheS 6407679 pheS Rhodopseudomonas palustris TIE-1 phenylalanyl-tRNA synthetase subunit alpha YP_001989076.1 43710 R 395960 CDS YP_001989077.1 192288472 6407680 complement(44936..45295) 1 NC_011004.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 45295 rplT 6407680 rplT Rhodopseudomonas palustris TIE-1 50S ribosomal protein L20 YP_001989077.1 44936 R 395960 CDS YP_001989078.1 192288473 6407681 complement(45379..45579) 1 NC_011004.1 PFAM: ribosomal protein L35; KEGG: bbt:BBta_0216 50S ribosomal protein L35; 50S ribosomal protein L35 45579 rpmI 6407681 rpmI Rhodopseudomonas palustris TIE-1 50S ribosomal protein L35 YP_001989078.1 45379 R 395960 CDS YP_001989079.1 192288474 6407682 complement(45913..46491) 1 NC_011004.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 46491 infC 6407682 infC Rhodopseudomonas palustris TIE-1 translation initiation factor IF-3 YP_001989079.1 45913 R 395960 CDS YP_001989080.1 192288475 6407683 46773..47558 1 NC_011004.1 KEGG: bra:BRADO0132 conserved hypothetical protein, alpha/beta hydrolase superfamily; hypothetical protein 47558 6407683 Rpal_0042 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989080.1 46773 D 395960 CDS YP_001989081.1 192288476 6407684 complement(47716..48828) 1 NC_011004.1 PFAM: domain of unknown function DUF1730; KEGG: bja:bll0714 iron-sulfur cluster binding protein; hypothetical protein 48828 6407684 Rpal_0043 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989081.1 47716 R 395960 CDS YP_001989082.1 192288477 6407685 complement(48873..49565) 1 NC_011004.1 PFAM: glutathione S-transferase domain; KEGG: bbt:BBta_0222 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 49565 6407685 Rpal_0044 Rhodopseudomonas palustris TIE-1 glutathione S-transferase domain-containing protein YP_001989082.1 48873 R 395960 CDS YP_001989083.1 192288478 6407686 49765..50571 1 NC_011004.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 50571 6407686 Rpal_0045 Rhodopseudomonas palustris TIE-1 undecaprenyl pyrophosphate phosphatase YP_001989083.1 49765 D 395960 CDS YP_001989084.1 192288479 6407687 complement(50621..51586) 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: bra:BRADO0128 conserved hypothetical protein; NAD dependent epimerase/dehydratase family protein; NADH dehydrogenase (ubiquinone) 51586 6407687 Rpal_0046 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase (ubiquinone) YP_001989084.1 50621 R 395960 CDS YP_001989085.1 192288480 6407689 52000..52614 1 NC_011004.1 PFAM: 3'-5' exonuclease; KEGG: bja:blr0719 hypothetical protein; 3'-5' exonuclease 52614 6407689 Rpal_0047 Rhodopseudomonas palustris TIE-1 3'-5' exonuclease YP_001989085.1 52000 D 395960 CDS YP_001989086.1 192288481 6407690 52844..53584 1 NC_011004.1 PFAM: protein of unknown function DUF1239; KEGG: bja:blr0720 hypothetical protein; hypothetical protein 53584 6407690 Rpal_0048 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989086.1 52844 D 395960 CDS YP_001989087.1 192288482 6407691 53593..54258 1 NC_011004.1 PFAM: OstA family protein; KEGG: nha:Nham_0177 OstA-like protein; OstA family protein 54258 6407691 Rpal_0049 Rhodopseudomonas palustris TIE-1 OstA family protein YP_001989087.1 53593 D 395960 CDS YP_001989088.1 192288483 6407692 54394..55344 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nwi:Nwi_0174 ABC transporter ATPase subunit; ABC transporter 55344 6407692 Rpal_0050 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001989088.1 54394 D 395960 CDS YP_001989089.1 192288484 6407693 55375..55515 1 NC_011004.1 hypothetical protein 55515 6407693 Rpal_0051 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989089.1 55375 D 395960 CDS YP_001989090.1 192288485 6407694 55551..57197 1 NC_011004.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 57197 6407694 Rpal_0052 Rhodopseudomonas palustris TIE-1 RNA polymerase factor sigma-54 YP_001989090.1 55551 D 395960 CDS YP_001989091.1 192288486 6407695 57255..57860 1 NC_011004.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: bbt:BBta_0120 sigma (54) modulation protein; sigma 54 modulation protein/30S ribosomal protein S30EA 57860 6407695 Rpal_0053 Rhodopseudomonas palustris TIE-1 sigma 54 modulation protein/30S ribosomal protein S30EA YP_001989091.1 57255 D 395960 CDS YP_001989092.1 192288487 6407696 58136..58597 1 NC_011004.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: bra:BRADO0111 nitrogen regulatory protein; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 58597 6407696 Rpal_0054 Rhodopseudomonas palustris TIE-1 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_001989092.1 58136 D 395960 CDS YP_001989093.1 192288488 6407697 complement(59203..59469) 1 NC_011004.1 PFAM: protein of unknown function DUF1150; KEGG: bbt:BBta_0116 hypothetical protein; hypothetical protein 59469 6407697 Rpal_0055 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989093.1 59203 R 395960 CDS YP_001989094.1 192288489 6407698 complement(59520..59945) 1 NC_011004.1 PFAM: heat shock protein Hsp20; KEGG: bja:bll0729 small heat shock protein; heat shock protein Hsp20 59945 6407698 Rpal_0056 Rhodopseudomonas palustris TIE-1 heat shock protein Hsp20 YP_001989094.1 59520 R 395960 CDS YP_001989095.1 192288490 6407699 complement(60099..61190) 1 NC_011004.1 part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit 61190 ugpC 6407699 ugpC Rhodopseudomonas palustris TIE-1 glycerol-3-phosphate transporter ATP-binding subunit YP_001989095.1 60099 R 395960 CDS YP_001989096.1 192288491 6407700 complement(61193..62041) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:bll0731 glycerol-3-phosphate ABC transporter membrane spanning protein; ABC transporter inner membrane protein 62041 6407700 Rpal_0058 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001989096.1 61193 R 395960 CDS YP_001989097.1 192288492 6407701 complement(62041..62922) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:bll0732 glycerol-3-phosphate ABC transporter permease protein; ABC transporter inner membrane protein 62922 6407701 Rpal_0059 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001989097.1 62041 R 395960 CDS YP_001989098.1 192288493 6407702 complement(63087..64415) 1 NC_011004.1 PFAM: extracellular solute-binding protein family 1; KEGG: bja:bll0733 ABC transporter glycerol-3-phosphate-binding protein; family 1 extracellular solute-binding protein 64415 6407702 Rpal_0060 Rhodopseudomonas palustris TIE-1 family 1 extracellular solute-binding protein YP_001989098.1 63087 R 395960 CDS YP_001989099.1 192288494 6407703 complement(64647..65852) 1 NC_011004.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:bll0734 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 65852 6407703 Rpal_0061 Rhodopseudomonas palustris TIE-1 L-carnitine dehydratase/bile acid-inducible protein F YP_001989099.1 64647 R 395960 CDS YP_001989100.1 192288495 6407704 complement(65898..66134) 1 NC_011004.1 PFAM: excinuclease ABC subunit C; KEGG: rle:RL0110 hypothetical protein; excinuclease ABC subunit C 66134 6407704 Rpal_0062 Rhodopseudomonas palustris TIE-1 excinuclease ABC subunit C YP_001989100.1 65898 R 395960 CDS YP_001989101.1 192288496 6407706 complement(66681..67082) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bja:bll0737 hypothetical protein; hypothetical protein 67082 6407706 Rpal_0063 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989101.1 66681 R 395960 CDS YP_001989102.1 192288497 6407707 67223..68560 1 NC_011004.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 68560 6407707 Rpal_0064 Rhodopseudomonas palustris TIE-1 3-phosphoshikimate 1-carboxyvinyltransferase YP_001989102.1 67223 D 395960 CDS YP_001989103.1 192288498 6407708 complement(68564..69238) 1 NC_011004.1 PFAM: protein of unknown function DUF374; KEGG: mag:amb4091 hypothetical protein; hypothetical protein 69238 6407708 Rpal_0065 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989103.1 68564 R 395960 CDS YP_001989104.1 192288499 6407709 69403..70041 1 NC_011004.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 70041 cmk 6407709 cmk Rhodopseudomonas palustris TIE-1 cytidylate kinase YP_001989104.1 69403 D 395960 CDS YP_001989105.1 192288500 6407710 70342..72039 1 NC_011004.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 72039 rpsA 6407710 rpsA Rhodopseudomonas palustris TIE-1 30S ribosomal protein S1 YP_001989105.1 70342 D 395960 CDS YP_001989106.1 192288501 6407711 72268..73248 1 NC_011004.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: bra:BRADO0095 peptidase S49 family; signal peptide peptidase SppA; signal peptide peptidase SppA, 36K type 73248 6407711 Rpal_0068 Rhodopseudomonas palustris TIE-1 signal peptide peptidase SppA, 36K type YP_001989106.1 72268 D 395960 CDS YP_001989107.1 192288502 6407712 73414..73728 1 NC_011004.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 73728 ihfB 6407712 ihfB Rhodopseudomonas palustris TIE-1 integration host factor subunit beta YP_001989107.1 73414 D 395960 CDS YP_001989108.1 192288503 6407713 73766..74152 1 NC_011004.1 KEGG: bja:blr0743 hypothetical protein; hypothetical protein 74152 6407713 Rpal_0070 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989108.1 73766 D 395960 CDS YP_001989109.1 192288504 6407714 74211..74852 1 NC_011004.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 74852 6407714 Rpal_0071 Rhodopseudomonas palustris TIE-1 N-(5'-phosphoribosyl)anthranilate isomerase YP_001989109.1 74211 D 395960 CDS YP_001989110.1 192288505 6407715 74866..76080 1 NC_011004.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 76080 6407715 Rpal_0072 Rhodopseudomonas palustris TIE-1 tryptophan synthase subunit beta YP_001989110.1 74866 D 395960 CDS YP_001989111.1 192288506 6407716 76080..76916 1 NC_011004.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 76916 trpA 6407716 trpA Rhodopseudomonas palustris TIE-1 tryptophan synthase subunit alpha YP_001989111.1 76080 D 395960 CDS YP_001989112.1 192288507 6407717 77026..78009 1 NC_011004.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 78009 6407717 Rpal_0074 Rhodopseudomonas palustris TIE-1 acetyl-CoA carboxylase subunit beta YP_001989112.1 77026 D 395960 CDS YP_001989113.1 192288508 6407718 78006..79334 1 NC_011004.1 KEGG: nha:Nham_0060 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 79334 6407718 Rpal_0075 Rhodopseudomonas palustris TIE-1 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_001989113.1 78006 D 395960 CDS YP_001989114.1 192288509 6407719 complement(79508..79828) 1 NC_011004.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: bbt:BBta_0091 thioredoxin 1, redox factor; thioredoxin 79828 6407719 Rpal_0076 Rhodopseudomonas palustris TIE-1 thioredoxin YP_001989114.1 79508 R 395960 CDS YP_001989115.1 192288510 6407720 complement(79925..83410) 1 NC_011004.1 TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: bja:bll0752 helicase 2; double-strand break repair helicase AddA 83410 6407720 Rpal_0077 Rhodopseudomonas palustris TIE-1 double-strand break repair helicase AddA YP_001989115.1 79925 R 395960 CDS YP_001989116.1 192288511 6407721 complement(83407..86556) 1 NC_011004.1 TIGRFAM: double-strand break repair protein AddB; KEGG: bbt:BBta_0089 helicase-exonuclease type V protein family, AddB subunit; double-strand break repair protein AddB 86556 6407721 Rpal_0078 Rhodopseudomonas palustris TIE-1 double-strand break repair protein AddB YP_001989116.1 83407 R 395960 CDS YP_001989117.1 192288512 6407722 complement(86632..87354) 1 NC_011004.1 PFAM: nucleotidyl transferase; KEGG: nha:Nham_0056 nucleotidyl transferase; nucleotidyl transferase 87354 6407722 Rpal_0079 Rhodopseudomonas palustris TIE-1 nucleotidyl transferase YP_001989117.1 86632 R 395960 CDS YP_001989118.1 192288513 6407723 complement(87512..87820) 1 NC_011004.1 KEGG: bbt:BBta_0087 hypothetical protein; hypothetical protein 87820 6407723 Rpal_0080 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989118.1 87512 R 395960 CDS YP_001989119.1 192288514 6407724 complement(87924..89444) 1 NC_011004.1 PFAM: aminoglycoside phosphotransferase; protein of unknown function UPF0079; KEGG: nha:Nham_0054 protein of unknown function UPF0079; hypothetical protein 89444 6407724 Rpal_0081 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989119.1 87924 R 395960 CDS YP_001989120.1 192288515 6407725 complement(89441..91954) 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: nwi:Nwi_0045 histidine kinase; PAS/PAC sensor signal transduction histidine kinase 91954 6407725 Rpal_0082 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor signal transduction histidine kinase YP_001989120.1 89441 R 395960 CDS YP_001989121.1 192288516 6407726 complement(92174..92632) 1 NC_011004.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 92632 dut 6407726 dut Rhodopseudomonas palustris TIE-1 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001989121.1 92174 R 395960 CDS YP_001989122.1 192288517 6407727 complement(92629..94074) 1 NC_011004.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; in the alphaproteobacteria, this protein contains an N-terminal SbtC-like domain; bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 94074 6407727 Rpal_0084 Rhodopseudomonas palustris TIE-1 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_001989122.1 92629 R 395960 CDS YP_001989123.1 192288518 6407728 complement(94128..95705) 1 NC_011004.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: bbt:BBta_0082 ubiquinone biosynthesis protein UbiB; 2-polyprenylphenol 6-hydroxylase 95705 6407728 Rpal_0085 Rhodopseudomonas palustris TIE-1 2-polyprenylphenol 6-hydroxylase YP_001989123.1 94128 R 395960 CDS YP_001989124.1 192288519 6407729 complement(95702..96463) 1 NC_011004.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 96463 ubiE 6407729 ubiE Rhodopseudomonas palustris TIE-1 ubiquinone/menaquinone biosynthesis methyltransferase YP_001989124.1 95702 R 395960 CDS YP_001989125.1 192288520 6407730 96707..97582 1 NC_011004.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 97582 6407730 Rpal_0087 Rhodopseudomonas palustris TIE-1 formamidopyrimidine-DNA glycosylase YP_001989125.1 96707 D 395960 CDS YP_001989126.1 192288521 6407731 complement(97634..98980) 1 NC_011004.1 PFAM: peptidoglycan-binding domain 1 protein; KEGG: bja:bll0764 hypothetical protein; peptidoglycan-binding domain 1 protein 98980 6407731 Rpal_0088 Rhodopseudomonas palustris TIE-1 peptidoglycan-binding domain 1 protein YP_001989126.1 97634 R 395960 CDS YP_001989127.1 192288522 6407732 99189..99989 1 NC_011004.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: bja:blr0765 molybdopterin biosynthesis protein; UBA/THIF-type NAD/FAD binding protein 99989 6407732 Rpal_0089 Rhodopseudomonas palustris TIE-1 UBA/THIF-type NAD/FAD binding protein YP_001989127.1 99189 D 395960 CDS YP_001989128.1 192288523 6407733 100114..101802 1 NC_011004.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: bja:blr0559 MFS permease; hypothetical protein 101802 6407733 Rpal_0090 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989128.1 100114 D 395960 CDS YP_001989129.1 192288524 6407734 complement(101783..101881) 1 NC_011004.1 hypothetical protein 101881 6407734 Rpal_0091 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989129.1 101783 R 395960 CDS YP_001989130.1 192288525 6407735 complement(101934..102152) 1 NC_011004.1 KEGG: bra:BRADO0286 conserved hypothetical protein; signal peptide; hypothetical protein 102152 6407735 Rpal_0092 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989130.1 101934 R 395960 CDS YP_001989131.1 192288526 6407736 complement(102281..102622) 1 NC_011004.1 KEGG: bja:blr3464 hypothetical protein; hypothetical protein 102622 6407736 Rpal_0093 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989131.1 102281 R 395960 CDS YP_001989132.1 192288527 6407737 complement(102861..103265) 1 NC_011004.1 hypothetical protein 103265 6407737 Rpal_0094 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989132.1 102861 R 395960 CDS YP_001989133.1 192288528 6407738 complement(103344..103685) 1 NC_011004.1 KEGG: mex:Mext_0878 collagen triple helix repeat; hypothetical protein 103685 6407738 Rpal_0095 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989133.1 103344 R 395960 CDS YP_001989134.1 192288529 6407739 complement(104226..104501) 1 NC_011004.1 KEGG: bra:BRADO2381 hypothetical protein; hypothetical protein 104501 6407739 Rpal_0096 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989134.1 104226 R 395960 CDS YP_001989135.1 192288530 6407740 104632..105279 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: bbt:BBta_2740 transcriptional regulator, TetR family; TetR family transcriptional regulator 105279 6407740 Rpal_0097 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001989135.1 104632 D 395960 CDS YP_001989136.1 192288531 6407741 105276..106193 1 NC_011004.1 PFAM: PepSY-associated TM helix domain protein; KEGG: bja:bll3835 hypothetical protein; PepSY-associated TM helix domain-containing protein 106193 6407741 Rpal_0098 Rhodopseudomonas palustris TIE-1 PepSY-associated TM helix domain-containing protein YP_001989136.1 105276 D 395960 CDS YP_001989137.1 192288532 6407742 106242..107468 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: nha:Nham_0992 secretion protein HlyD; RND family efflux transporter MFP subunit 107468 6407742 Rpal_0099 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001989137.1 106242 D 395960 CDS YP_001989138.1 192288533 6407743 107472..110621 1 NC_011004.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: nha:Nham_0993 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 110621 6407743 Rpal_0100 Rhodopseudomonas palustris TIE-1 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_001989138.1 107472 D 395960 CDS YP_001989139.1 192288534 6407744 110760..111170 1 NC_011004.1 PFAM: protein of unknown function DUF1078 domain protein; KEGG: bra:BRADO6624 flagellar basal-body rod protein (FlgC); hypothetical protein 111170 6407744 Rpal_0101 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989139.1 110760 D 395960 CDS YP_001989140.1 192288535 6407745 complement(111313..112371) 1 NC_011004.1 KEGG: mrd:Mrad2831_4760 oligopeptide/dipeptide ABC transporter ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 112371 6407745 Rpal_0102 Rhodopseudomonas palustris TIE-1 oligopeptide/dipeptide ABC transporter ATPase YP_001989140.1 111313 R 395960 CDS YP_001989141.1 192288536 6407746 complement(112368..113366) 1 NC_011004.1 KEGG: mrd:Mrad2831_4761 oligopeptide/dipeptide ABC transporter ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 113366 6407746 Rpal_0103 Rhodopseudomonas palustris TIE-1 oligopeptide/dipeptide ABC transporter ATPase YP_001989141.1 112368 R 395960 CDS YP_001989142.1 192288537 6407747 complement(113369..114277) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: mrd:Mrad2831_4762 ABC transporter inner membrane protein; ABC transporter inner membrane protein 114277 6407747 Rpal_0104 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001989142.1 113369 R 395960 CDS YP_001989143.1 192288538 6407748 complement(114274..115254) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: mrd:Mrad2831_4763 ABC transporter inner membrane protein; ABC transporter inner membrane protein 115254 6407748 Rpal_0105 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001989143.1 114274 R 395960 CDS YP_001989144.1 192288539 6407749 complement(115283..116884) 1 NC_011004.1 PFAM: extracellular solute-binding protein family 5; KEGG: mrd:Mrad2831_4764 extracellular solute-binding protein family 5; family 5 extracellular solute-binding protein 116884 6407749 Rpal_0106 Rhodopseudomonas palustris TIE-1 family 5 extracellular solute-binding protein YP_001989144.1 115283 R 395960 CDS YP_001989145.1 192288540 6407750 complement(116974..117930) 1 NC_011004.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mrd:Mrad2831_4765 cobalamin synthesis protein P47K; cobalamin synthesis protein P47K 117930 6407750 Rpal_0107 Rhodopseudomonas palustris TIE-1 cobalamin synthesis protein P47K YP_001989145.1 116974 R 395960 CDS YP_001989146.1 192288541 6407751 complement(117927..119570) 1 NC_011004.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mrd:Mrad2831_4766 amidohydrolase 3; amidohydrolase 119570 6407751 Rpal_0108 Rhodopseudomonas palustris TIE-1 amidohydrolase YP_001989146.1 117927 R 395960 CDS YP_001989147.1 192288542 6407752 119809..121350 1 NC_011004.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: mrd:Mrad2831_4755 transcriptional regulator, GntR family with aminotransferase domain protein; GntR family transcriptional regulator 121350 6407752 Rpal_0109 Rhodopseudomonas palustris TIE-1 GntR family transcriptional regulator YP_001989147.1 119809 D 395960 CDS YP_001989148.1 192288543 6407753 complement(121366..122574) 1 NC_011004.1 KEGG: bra:BRADO6883 ABC transporter substrate-binding protein; branched-chain amino acid transporter; branched-chain amino acid ABC transporter substrate-binding protein 122574 6407753 Rpal_0110 Rhodopseudomonas palustris TIE-1 branched-chain amino acid ABC transporter substrate-binding protein YP_001989148.1 121366 R 395960 CDS YP_001989149.1 192288544 6407754 complement(122594..123634) 1 NC_011004.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gme:Gmet_2235 alcohol dehydrogenase superfamily, zinc-containing; alcohol dehydrogenase GroES domain-containing protein 123634 6407754 Rpal_0111 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase GroES domain-containing protein YP_001989149.1 122594 R 395960 CDS YP_001989150.1 192288545 6407755 complement(123664..125412) 1 NC_011004.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: mjl:Mjls_2332 thiamine pyrophosphate enzyme TPP binding domain protein; thiamine pyrophosphate protein TPP binding domain-containing protein 125412 6407755 Rpal_0112 Rhodopseudomonas palustris TIE-1 thiamine pyrophosphate protein TPP binding domain-containing protein YP_001989150.1 123664 R 395960 CDS YP_001989151.1 192288546 6407756 complement(125453..126241) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_0924 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 126241 6407756 Rpal_0113 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001989151.1 125453 R 395960 CDS YP_001989152.1 192288547 6407757 126442..127104 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: hne:HNE_2415 transcriptional regulator, TetR family; TetR family transcriptional regulator 127104 6407757 Rpal_0114 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001989152.1 126442 D 395960 CDS YP_001989153.1 192288548 6407758 complement(127157..127945) 1 NC_011004.1 PFAM: protein of unknown function DUF81; KEGG: mrd:Mrad2831_4756 protein of unknown function DUF81; hypothetical protein 127945 6407758 Rpal_0115 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989153.1 127157 R 395960 CDS YP_001989154.1 192288549 6407759 complement(127954..129465) 1 NC_011004.1 PFAM: Aldehyde Dehydrogenase_; KEGG: mrd:Mrad2831_4757 aldehyde dehydrogenase; aldehyde dehydrogenase 129465 6407759 Rpal_0116 Rhodopseudomonas palustris TIE-1 aldehyde dehydrogenase YP_001989154.1 127954 R 395960 CDS YP_001989155.1 192288550 6407760 129677..130084 1 NC_011004.1 PFAM: protein of unknown function DUF1486; KEGG: mrd:Mrad2831_4758 protein of unknown function DUF1486; hypothetical protein 130084 6407760 Rpal_0117 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989155.1 129677 D 395960 CDS YP_001989156.1 192288551 6407761 130081..131475 1 NC_011004.1 PFAM: FAD dependent oxidoreductase; KEGG: mrd:Mrad2831_4759 FAD dependent oxidoreductase; FAD dependent oxidoreductase 131475 6407761 Rpal_0118 Rhodopseudomonas palustris TIE-1 FAD dependent oxidoreductase YP_001989156.1 130081 D 395960 CDS YP_001989157.1 192288552 6407762 complement(131599..131952) 1 NC_011004.1 KEGG: xau:Xaut_4360 hypothetical protein; hypothetical protein 131952 6407762 Rpal_0119 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989157.1 131599 R 395960 CDS YP_001989158.1 192288553 6407763 132295..133356 1 NC_011004.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: azc:AZC_1833 dTDP-D-glucose-4,6-dehydratase; dTDP-glucose 4,6-dehydratase 133356 6407763 Rpal_0120 Rhodopseudomonas palustris TIE-1 dTDP-glucose 4,6-dehydratase YP_001989158.1 132295 D 395960 CDS YP_001989159.1 192288554 6407764 133382..133939 1 NC_011004.1 KEGG: rru:Rru_B0038 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 133939 6407764 Rpal_0121 Rhodopseudomonas palustris TIE-1 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001989159.1 133382 D 395960 CDS YP_001989160.1 192288555 6407765 133944..134837 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rle:RL1624 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 134837 6407765 Rpal_0122 Rhodopseudomonas palustris TIE-1 dTDP-4-dehydrorhamnose reductase YP_001989160.1 133944 D 395960 CDS YP_001989161.1 192288556 6407766 134839..135714 1 NC_011004.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: ccr:CC_1141 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 135714 6407766 Rpal_0123 Rhodopseudomonas palustris TIE-1 glucose-1-phosphate thymidylyltransferase YP_001989161.1 134839 D 395960 CDS YP_001989162.1 192288557 6407767 135802..136692 1 NC_011004.1 KEGG: azc:AZC_3956 hypothetical protein; hypothetical protein 136692 6407767 Rpal_0124 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989162.1 135802 D 395960 CDS YP_001989163.1 192288558 6407768 136785..139064 1 NC_011004.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: ava:Ava_1003 multi-sensor signal transduction histidine kinase; GAF sensor signal transduction histidine kinase 139064 6407768 Rpal_0125 Rhodopseudomonas palustris TIE-1 GAF sensor signal transduction histidine kinase YP_001989163.1 136785 D 395960 CDS YP_001989164.1 192288559 6407769 139057..140697 1 NC_011004.1 PFAM: TrkA-N domain protein; ion transport 2 domain protein; KEGG: eba:ebA5259 KTN NAD-binding domain involved with K+ transport precursor; TrkA-N domain-containing protein 140697 6407769 Rpal_0126 Rhodopseudomonas palustris TIE-1 TrkA-N domain-containing protein YP_001989164.1 139057 D 395960 CDS YP_001989165.1 192288560 6407770 complement(140704..141528) 1 NC_011004.1 PFAM: metallophosphoesterase; KEGG: bja:bll4141 hypothetical protein; metallophosphoesterase 141528 6407770 Rpal_0127 Rhodopseudomonas palustris TIE-1 metallophosphoesterase YP_001989165.1 140704 R 395960 CDS YP_001989166.1 192288561 6407771 complement(141525..142349) 1 NC_011004.1 PFAM: metallophosphoesterase; KEGG: mlo:mll3631 3',5'-cyclic-nucleotide phosphodiesterase, CpdA; metallophosphoesterase 142349 6407771 Rpal_0128 Rhodopseudomonas palustris TIE-1 metallophosphoesterase YP_001989166.1 141525 R 395960 CDS YP_001989167.1 192288562 6407772 complement(142414..143694) 1 NC_011004.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcs:BCAN_B1211 hypothetical protein; family 1 extracellular solute-binding protein 143694 6407772 Rpal_0129 Rhodopseudomonas palustris TIE-1 family 1 extracellular solute-binding protein YP_001989167.1 142414 R 395960 CDS YP_001989168.1 192288563 6407773 complement(143717..144553) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bcs:BCAN_B1212 lactose transport system permease protein LacG; ABC transporter inner membrane protein 144553 6407773 Rpal_0130 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001989168.1 143717 R 395960 CDS YP_001989169.1 192288564 6407774 complement(144550..145509) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: oan:Oant_1668 ABC transporter inner membrane protein; ABC transporter inner membrane protein 145509 6407774 Rpal_0131 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001989169.1 144550 R 395960 CDS YP_001989170.1 192288565 6407775 complement(145502..146656) 1 NC_011004.1 PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: sil:SPO1823 sugar ABC transporter ATP-binding protein; ABC transporter 146656 6407775 Rpal_0132 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001989170.1 145502 R 395960 CDS YP_001989171.1 192288566 6407776 146784..147662 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMb21535 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 147662 6407776 Rpal_0133 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001989171.1 146784 D 395960 CDS YP_001989172.1 192288567 6407777 complement(147668..148363) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: smd:Smed_4541 sulfate ABC transporter ATPase subunit; ABC transporter 148363 6407777 Rpal_0134 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001989172.1 147668 R 395960 CDS YP_001989173.1 192288568 6407778 complement(148360..149133) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: xau:Xaut_4037 ABC transporter inner membrane protein; ABC transporter inner membrane protein 149133 6407778 Rpal_0135 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001989173.1 148360 R 395960 CDS YP_001989174.1 192288569 6407779 complement(149123..150115) 1 NC_011004.1 KEGG: sth:STH760 ABC transporter substrate-binding protein; ABC transporter substrate-binding protein 150115 6407779 Rpal_0136 Rhodopseudomonas palustris TIE-1 ABC transporter substrate-binding protein YP_001989174.1 149123 R 395960 CDS YP_001989175.1 192288570 6407780 complement(150131..151990) 1 NC_011004.1 TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: dvu:DVU1771 [Fe] hydrogenase gamma; hydrogenase, Fe-only 151990 6407780 Rpal_0137 Rhodopseudomonas palustris TIE-1 hydrogenase, Fe-only YP_001989175.1 150131 R 395960 CDS YP_001989176.1 192288571 6407781 complement(151995..153986) 1 NC_011004.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvl:Dvul_1383 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 153986 6407781 Rpal_0138 Rhodopseudomonas palustris TIE-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001989176.1 151995 R 395960 CDS YP_001989177.1 192288572 6407782 complement(154156..155865) 1 NC_011004.1 KEGG: bja:blr2350 hypothetical protein; methyl-accepting chemotaxis sensory transducer 155865 6407782 Rpal_0139 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001989177.1 154156 R 395960 CDS YP_001989178.1 192288573 6407783 complement(155870..156961) 1 NC_011004.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: bja:blr2349 chemotaxis two-component response regulator; response regulator receiver modulated CheB methylesterase 156961 6407783 Rpal_0140 Rhodopseudomonas palustris TIE-1 response regulator receiver modulated CheB methylesterase YP_001989178.1 155870 R 395960 CDS YP_001989179.1 192288574 6407784 complement(156982..157824) 1 NC_011004.1 PFAM: MCP methyltransferase CheR-type; KEGG: bja:blr2348 protein-glutamate O-methyltransferase; CheR-type MCP methyltransferase 157824 6407784 Rpal_0141 Rhodopseudomonas palustris TIE-1 CheR-type MCP methyltransferase YP_001989179.1 156982 R 395960 CDS YP_001989180.1 192288575 6407785 complement(157985..160186) 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_7837 methyl-accepting chemotaxis protein (MCP); methyl-accepting chemotaxis sensory transducer 160186 6407785 Rpal_0142 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001989180.1 157985 R 395960 CDS YP_001989181.1 192288576 6407786 complement(160253..160741) 1 NC_011004.1 PFAM: CheW domain protein; KEGG: bbt:BBta_7835 chemotaxis protein CheW; CheW protein 160741 6407786 Rpal_0143 Rhodopseudomonas palustris TIE-1 CheW protein YP_001989181.1 160253 R 395960 CDS YP_001989182.1 192288577 6407787 complement(160802..161272) 1 NC_011004.1 PFAM: CheW domain protein; KEGG: bja:blr2344 probable chemotaxis protein; CheW protein 161272 6407787 Rpal_0144 Rhodopseudomonas palustris TIE-1 CheW protein YP_001989182.1 160802 R 395960 CDS YP_001989183.1 192288578 6407788 complement(161272..163338) 1 NC_011004.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: bbt:BBta_6737 chemotaxis protein CheA; CheA signal transduction histidine kinase 163338 6407788 Rpal_0145 Rhodopseudomonas palustris TIE-1 CheA signal transduction histidine kinase YP_001989183.1 161272 R 395960 CDS YP_001989184.1 192288579 6407789 complement(163335..163700) 1 NC_011004.1 PFAM: response regulator receiver; KEGG: bja:blr2342 chemotaxis two-component response regulator; response regulator receiver protein 163700 6407789 Rpal_0146 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001989184.1 163335 R 395960 CDS YP_001989185.1 192288580 6407790 complement(163700..164023) 1 NC_011004.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: bja:blr2341 hypothetical protein; anti-sigma-factor antagonist 164023 6407790 Rpal_0147 Rhodopseudomonas palustris TIE-1 anti-sigma-factor antagonist YP_001989185.1 163700 R 395960 CDS YP_001989186.1 192288581 6407791 164312..165469 1 NC_011004.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: bja:bll2340 two-component response regulator; response regulator receiver modulated metal dependent phosphohydrolase 165469 6407791 Rpal_0148 Rhodopseudomonas palustris TIE-1 response regulator receiver modulated metal dependent phosphohydrolase YP_001989186.1 164312 D 395960 CDS YP_001989187.1 192288582 6407792 complement(165638..165820) 1 NC_011004.1 hypothetical protein 165820 6407792 Rpal_0149 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989187.1 165638 R 395960 CDS YP_001989188.1 192288583 6407794 complement(166287..167450) 1 NC_011004.1 KEGG: bra:BRADO0437 conserved hypothetical protein; glucokinase; hypothetical protein 167450 6407794 Rpal_0150 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989188.1 166287 R 395960 CDS YP_001989189.1 192288584 6407795 167773..168153 1 NC_011004.1 PFAM: ribosomal protein L21; KEGG: nwi:Nwi_0439 50S ribosomal protein L21; 50S ribosomal protein L21 168153 rplU 6407795 rplU Rhodopseudomonas palustris TIE-1 50S ribosomal protein L21 YP_001989189.1 167773 D 395960 CDS YP_001989190.1 192288585 6407796 168243..168515 1 NC_011004.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 168515 rpmA 6407796 rpmA Rhodopseudomonas palustris TIE-1 50S ribosomal protein L27 YP_001989190.1 168243 D 395960 CDS YP_001989191.1 192288586 6407797 168650..169249 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_0516 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 169249 6407797 Rpal_0153 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001989191.1 168650 D 395960 CDS YP_001989192.1 192288587 6407798 169461..169652 1 NC_011004.1 hypothetical protein 169652 6407798 Rpal_0154 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989192.1 169461 D 395960 CDS YP_001989193.1 192288588 6407799 169782..169955 1 NC_011004.1 hypothetical protein 169955 6407799 Rpal_0155 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989193.1 169782 D 395960 CDS YP_001989194.1 192288589 6407800 complement(169956..170861) 1 NC_011004.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:bll0423 hypothetical protein; hypothetical protein 170861 6407800 Rpal_0156 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989194.1 169956 R 395960 CDS YP_001989195.1 192288590 6407801 171013..172074 1 NC_011004.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 172074 obgE 6407801 obgE Rhodopseudomonas palustris TIE-1 GTPase ObgE YP_001989195.1 171013 D 395960 CDS YP_001989196.1 192288591 6407802 172213..173343 1 NC_011004.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 173343 6407802 Rpal_0158 Rhodopseudomonas palustris TIE-1 gamma-glutamyl kinase YP_001989196.1 172213 D 395960 CDS YP_001989197.1 192288592 6407803 173547..174839 1 NC_011004.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 174839 proA 6407803 proA Rhodopseudomonas palustris TIE-1 gamma-glutamyl phosphate reductase YP_001989197.1 173547 D 395960 CDS YP_001989198.1 192288593 6407804 174864..175493 1 NC_011004.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 175493 nadD 6407804 nadD Rhodopseudomonas palustris TIE-1 nicotinic acid mononucleotide adenylyltransferase YP_001989198.1 174864 D 395960 CDS YP_001989199.1 192288594 6407805 175708..176160 1 NC_011004.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: bbt:BBta_0417 hypothetical protein; iojap family protein 176160 6407805 Rpal_0161 Rhodopseudomonas palustris TIE-1 iojap family protein YP_001989199.1 175708 D 395960 CDS YP_001989200.1 192288595 6407806 176250..176732 1 NC_011004.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 176732 6407806 Rpal_0162 Rhodopseudomonas palustris TIE-1 rRNA large subunit methyltransferase YP_001989200.1 176250 D 395960 CDS YP_001989201.1 192288596 6407807 176752..178143 1 NC_011004.1 PFAM: peptidase M23; KEGG: nha:Nham_0524 peptidase M23B; peptidase M23 178143 6407807 Rpal_0163 Rhodopseudomonas palustris TIE-1 peptidase M23 YP_001989201.1 176752 D 395960 CDS YP_001989202.1 192288597 6407808 178140..179516 1 NC_011004.1 KEGG: bja:blr0434 carboxy-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 179516 6407808 Rpal_0164 Rhodopseudomonas palustris TIE-1 carboxyl-terminal protease YP_001989202.1 178140 D 395960 CDS YP_001989203.1 192288598 6407809 179667..180905 1 NC_011004.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: nha:Nham_0526 protein of unknown function DUF610, YibQ; hypothetical protein 180905 6407809 Rpal_0165 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989203.1 179667 D 395960 CDS YP_001989204.1 192288599 6407810 180944..181450 1 NC_011004.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 181450 6407810 Rpal_0166 Rhodopseudomonas palustris TIE-1 dinucleoside polyphosphate hydrolase YP_001989204.1 180944 D 395960 CDS YP_001989205.1 192288600 6407811 complement(181632..182702) 1 NC_011004.1 KEGG: mex:Mext_4348 hypothetical protein; hypothetical protein 182702 6407811 Rpal_0167 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989205.1 181632 R 395960 CDS YP_001989206.1 192288601 6407812 182970..183917 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: mca:MCA1165 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 183917 6407812 Rpal_0168 Rhodopseudomonas palustris TIE-1 NAD-dependent epimerase/dehydratase YP_001989206.1 182970 D 395960 CDS YP_001989207.1 192288602 6407813 183914..184435 1 NC_011004.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 184435 6407813 Rpal_0169 Rhodopseudomonas palustris TIE-1 dinucleoside polyphosphate hydrolase YP_001989207.1 183914 D 395960 CDS YP_001989208.1 192288603 6407814 complement(184618..185025) 1 NC_011004.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit epsilon 185025 atpC 6407814 atpC Rhodopseudomonas palustris TIE-1 F0F1 ATP synthase subunit epsilon YP_001989208.1 184618 R 395960 CDS YP_001989209.1 192288604 6407815 complement(185139..186569) 1 NC_011004.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 186569 6407815 Rpal_0171 Rhodopseudomonas palustris TIE-1 F0F1 ATP synthase subunit beta YP_001989209.1 185139 R 395960 CDS YP_001989210.1 192288605 6407816 complement(186641..187516) 1 NC_011004.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 187516 6407816 Rpal_0172 Rhodopseudomonas palustris TIE-1 F0F1 ATP synthase subunit gamma YP_001989210.1 186641 R 395960 CDS YP_001989211.1 192288606 6407817 complement(187660..189192) 1 NC_011004.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 189192 6407817 Rpal_0173 Rhodopseudomonas palustris TIE-1 F0F1 ATP synthase subunit alpha YP_001989211.1 187660 R 395960 CDS YP_001989212.1 192288607 6407818 complement(189192..189752) 1 NC_011004.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 189752 6407818 Rpal_0174 Rhodopseudomonas palustris TIE-1 F0F1 ATP synthase subunit delta YP_001989212.1 189192 R 395960 CDS YP_001989213.1 192288608 6407819 190456..190926 1 NC_011004.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: bja:blr044 hypothetical protein; rare lipoprotein A 190926 6407819 Rpal_0175 Rhodopseudomonas palustris TIE-1 rare lipoprotein A YP_001989213.1 190456 D 395960 CDS YP_001989214.1 192288609 6407820 complement(191082..193292) 1 NC_011004.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 193292 6407820 Rpal_0176 Rhodopseudomonas palustris TIE-1 primosome assembly protein PriA YP_001989214.1 191082 R 395960 CDS YP_001989215.1 192288610 6407821 193494..194465 1 NC_011004.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 194465 xerC 6407821 xerC Rhodopseudomonas palustris TIE-1 site-specific tyrosine recombinase XerC YP_001989215.1 193494 D 395960 CDS YP_001989216.1 192288611 6407822 194606..195196 1 NC_011004.1 KEGG: bbt:BBta_0400 membrane protein of unknown function; hypothetical protein 195196 6407822 Rpal_0178 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989216.1 194606 D 395960 CDS YP_001989217.1 192288612 6407823 complement(195260..195802) 1 NC_011004.1 KEGG: bja:bll0448 hypothetical protein; hypothetical protein 195802 6407823 Rpal_0179 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989217.1 195260 R 395960 CDS YP_001989218.1 192288613 6407824 complement(195842..197245) 1 NC_011004.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 197245 6407824 Rpal_0180 Rhodopseudomonas palustris TIE-1 dihydrolipoamide dehydrogenase YP_001989218.1 195842 R 395960 CDS YP_001989219.1 192288614 6407825 complement(197277..198023) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_0397 oxidoreductase (YgfF), NAD(P)-binding domain; short-chain dehydrogenase/reductase SDR 198023 6407825 Rpal_0181 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001989219.1 197277 R 395960 CDS YP_001989220.1 192288615 6407826 complement(198031..198432) 1 NC_011004.1 KEGG: bcs:BCAN_A1965 hypothetical protein; hypothetical protein 198432 6407826 Rpal_0182 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989220.1 198031 R 395960 CDS YP_001989221.1 192288616 6407827 complement(198491..199744) 1 NC_011004.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 199744 6407827 Rpal_0183 Rhodopseudomonas palustris TIE-1 dihydrolipoamide succinyltransferase YP_001989221.1 198491 R 395960 CDS YP_001989222.1 192288617 6407828 complement(199849..202806) 1 NC_011004.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 202806 sucA 6407828 sucA Rhodopseudomonas palustris TIE-1 2-oxoglutarate dehydrogenase E1 component YP_001989222.1 199849 R 395960 CDS YP_001989223.1 192288618 6407829 complement(202934..203818) 1 NC_011004.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: bbt:BBta_0394 succinyl-CoA synthetase, alpha subunit, NAD(P)-binding; succinyl-CoA synthetase subunit alpha 203818 6407829 Rpal_0185 Rhodopseudomonas palustris TIE-1 succinyl-CoA synthetase subunit alpha YP_001989223.1 202934 R 395960 CDS YP_001989224.1 192288619 6407830 complement(203883..205079) 1 NC_011004.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 205079 sucC 6407830 sucC Rhodopseudomonas palustris TIE-1 succinyl-CoA synthetase subunit beta YP_001989224.1 203883 R 395960 CDS YP_001989225.1 192288620 6407831 complement(205175..206143) 1 NC_011004.1 Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 206143 6407831 Rpal_0187 Rhodopseudomonas palustris TIE-1 malate dehydrogenase YP_001989225.1 205175 R 395960 CDS YP_001989226.1 192288621 6407832 complement(206289..207473) 1 NC_011004.1 PFAM: AFG1-family ATPase; KEGG: bra:BRADO0402 ATPase (YhcM) AFG1 family; AFG1 family ATPase 207473 6407832 Rpal_0188 Rhodopseudomonas palustris TIE-1 AFG1 family ATPase YP_001989226.1 206289 R 395960 CDS YP_001989227.1 192288622 6407833 complement(207556..208095) 1 NC_011004.1 TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: bra:BRADO0401 2'-5' RNA ligase; 2'-5' RNA ligase 208095 6407833 Rpal_0189 Rhodopseudomonas palustris TIE-1 2'-5' RNA ligase YP_001989227.1 207556 R 395960 CDS YP_001989228.1 192288623 6407834 complement(208301..208915) 1 NC_011004.1 PFAM: lipolytic protein G-D-S-L family; KEGG: bja:bll0459 esterase; G-D-S-L family lipolytic protein 208915 6407834 Rpal_0190 Rhodopseudomonas palustris TIE-1 G-D-S-L family lipolytic protein YP_001989228.1 208301 R 395960 CDS YP_001989229.1 192288624 6407835 208995..209738 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr0460 probable ABC transporter ATP-binding protein; ABC transporter 209738 6407835 Rpal_0191 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001989229.1 208995 D 395960 CDS YP_001989230.1 192288625 6407836 209742..212312 1 NC_011004.1 PFAM: protein of unknown function DUF214; KEGG: nha:Nham_0550 protein of unknown function DUF214; hypothetical protein 212312 6407836 Rpal_0192 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989230.1 209742 D 395960 CDS YP_001989231.1 192288626 6407839 214465..215259 1 NC_011004.1 PFAM: aminoglycoside phosphotransferase; KEGG: pap:PSPA7_3721 aminoglycoside 3'-phosphotransferase; aminoglycoside phosphotransferase 215259 6407839 Rpal_0195 Rhodopseudomonas palustris TIE-1 aminoglycoside phosphotransferase YP_001989231.1 214465 D 395960 CDS YP_001989232.1 192288627 6407840 215859..216389 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_0238 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 216389 6407840 Rpal_0196 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001989232.1 215859 D 395960 CDS YP_001989233.1 192288628 6407841 complement(216449..216817) 1 NC_011004.1 KEGG: nha:Nham_0406 hypothetical protein; hypothetical protein 216817 6407841 Rpal_0197 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989233.1 216449 R 395960 CDS YP_001989234.1 192288629 6407842 complement(217221..217976) 1 NC_011004.1 PFAM: protein of unknown function DUF1223; KEGG: nha:Nham_0407 protein of unknown function DUF1223; hypothetical protein 217976 6407842 Rpal_0198 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989234.1 217221 R 395960 CDS YP_001989235.1 192288630 6407843 complement(218143..220860) 1 NC_011004.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 220860 6407843 Rpal_0199 Rhodopseudomonas palustris TIE-1 aconitate hydratase YP_001989235.1 218143 R 395960 CDS YP_001989236.1 192288631 6407844 221076..221678 1 NC_011004.1 ATP-binding protein; required for proper cytochrome C maturation; cytochrome C biogenesis protein CcmA 221678 6407844 Rpal_0200 Rhodopseudomonas palustris TIE-1 cytochrome C biogenesis protein CcmA YP_001989236.1 221076 D 395960 CDS YP_001989237.1 192288632 6407845 221675..222343 1 NC_011004.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome C-type biogenesis protein CcmB; KEGG: bja:blr0468 heme exporter protein B; heme exporter protein CcmB 222343 6407845 Rpal_0201 Rhodopseudomonas palustris TIE-1 heme exporter protein CcmB YP_001989237.1 221675 D 395960 CDS YP_001989238.1 192288633 6407846 222436..223170 1 NC_011004.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome C assembly protein; KEGG: nwi:Nwi_0320 cytochrome C-type biogenesis protein CcmC; heme exporter protein CcmC 223170 6407846 Rpal_0202 Rhodopseudomonas palustris TIE-1 heme exporter protein CcmC YP_001989238.1 222436 D 395960 CDS YP_001989239.1 192288634 6407847 223170..223343 1 NC_011004.1 TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); KEGG: nha:Nham_0412 heme exporter protein D (CcmD); heme exporter protein CcmD 223343 6407847 Rpal_0203 Rhodopseudomonas palustris TIE-1 heme exporter protein CcmD YP_001989239.1 223170 D 395960 CDS YP_001989240.1 192288635 6407848 223360..223956 1 NC_011004.1 TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: bja:blr0471 thiol:disulfide interchange protein; protein thiol/disulfide oxidoreductase DsbE 223956 6407848 Rpal_0204 Rhodopseudomonas palustris TIE-1 protein thiol/disulfide oxidoreductase DsbE YP_001989240.1 223360 D 395960 CDS YP_001989241.1 192288636 6407849 224096..224479 1 NC_011004.1 KEGG: mex:Mext_2496 hypothetical protein; hypothetical protein 224479 6407849 Rpal_0205 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989241.1 224096 D 395960 CDS YP_001989242.1 192288637 6407850 complement(224619..225236) 1 NC_011004.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 225236 6407850 Rpal_0206 Rhodopseudomonas palustris TIE-1 intracellular septation protein A YP_001989242.1 224619 R 395960 CDS YP_001989243.1 192288638 6407851 complement(225233..226180) 1 NC_011004.1 KEGG: bja:bll0473 probable cell division protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; signal recognition particle-docking protein FtsY 226180 6407851 Rpal_0207 Rhodopseudomonas palustris TIE-1 signal recognition particle-docking protein FtsY YP_001989243.1 225233 R 395960 CDS YP_001989244.1 192288639 6407852 226209..227177 1 NC_011004.1 PFAM: pseudouridine synthase; KEGG: bra:BRADO0385 RNA pseudouridine synthase (uracil hydrolyase); pseudouridine synthase 227177 6407852 Rpal_0208 Rhodopseudomonas palustris TIE-1 pseudouridine synthase YP_001989244.1 226209 D 395960 CDS YP_001989245.1 192288640 6407853 227541..229493 1 NC_011004.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 229493 6407853 Rpal_0209 Rhodopseudomonas palustris TIE-1 acetyl-CoA synthetase YP_001989245.1 227541 D 395960 CDS YP_001989246.1 192288641 6407854 229876..230403 1 NC_011004.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr0574 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 230403 6407854 Rpal_0210 Rhodopseudomonas palustris TIE-1 ErfK/YbiS/YcfS/YnhG family protein YP_001989246.1 229876 D 395960 CDS YP_001989247.1 192288642 6407855 complement(230478..231398) 1 NC_011004.1 PFAM: OmpA/MotB domain protein; KEGG: bra:BRADO0242 hypothetical protein; OmpA/MotB domain-containing protein 231398 6407855 Rpal_0211 Rhodopseudomonas palustris TIE-1 OmpA/MotB domain-containing protein YP_001989247.1 230478 R 395960 CDS YP_001989248.1 192288643 6407856 231500..232618 1 NC_011004.1 KEGG: ani:AN5649.2 hypothetical protein; hypothetical protein 232618 6407856 Rpal_0212 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989248.1 231500 D 395960 CDS YP_001989249.1 192288644 6407857 complement(232778..233035) 1 NC_011004.1 KEGG: bja:bsr0520 hypothetical protein; hypothetical protein 233035 6407857 Rpal_0213 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989249.1 232778 R 395960 CDS YP_001989250.1 192288645 6407858 complement(233035..233523) 1 NC_011004.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bbt:BBta_0235 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 233523 6407858 Rpal_0214 Rhodopseudomonas palustris TIE-1 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001989250.1 233035 R 395960 CDS YP_001989251.1 192288646 6407859 complement(233760..234542) 1 NC_011004.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 234542 sdhB 6407859 sdhB Rhodopseudomonas palustris TIE-1 succinate dehydrogenase iron-sulfur subunit YP_001989251.1 233760 R 395960 CDS YP_001989252.1 192288647 6407860 complement(234650..236473) 1 NC_011004.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 236473 sdhA 6407860 sdhA Rhodopseudomonas palustris TIE-1 succinate dehydrogenase flavoprotein subunit YP_001989252.1 234650 R 395960 CDS YP_001989253.1 192288648 6407861 complement(236477..236890) 1 NC_011004.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: nha:Nham_3617 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, hydrophobic membrane anchor protein 236890 6407861 Rpal_0217 Rhodopseudomonas palustris TIE-1 succinate dehydrogenase, hydrophobic membrane anchor protein YP_001989253.1 236477 R 395960 CDS YP_001989254.1 192288649 6407862 complement(236887..237285) 1 NC_011004.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: bja:blr0512 succinate dehydrogenase cytochrome b-556 subunit; succinate dehydrogenase, cytochrome b556 subunit 237285 6407862 Rpal_0218 Rhodopseudomonas palustris TIE-1 succinate dehydrogenase, cytochrome b556 subunit YP_001989254.1 236887 R 395960 CDS YP_001989255.1 192288650 6407863 237664..238608 1 NC_011004.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: nha:Nham_3422 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 238608 6407863 Rpal_0219 Rhodopseudomonas palustris TIE-1 cation diffusion facilitator family transporter YP_001989255.1 237664 D 395960 CDS YP_001989256.1 192288651 6407864 complement(238841..240352) 1 NC_011004.1 catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase 240352 6407864 Rpal_0220 Rhodopseudomonas palustris TIE-1 malonyl-CoA synthase YP_001989256.1 238841 R 395960 CDS YP_001989257.1 192288652 6407865 240629..241204 1 NC_011004.1 PFAM: beta-Ig-H3/fasciclin; KEGG: bbt:BBta_0336 exported protein of unknown function with Fas1 domain; beta-Ig-H3/fasciclin 241204 6407865 Rpal_0221 Rhodopseudomonas palustris TIE-1 beta-Ig-H3/fasciclin YP_001989257.1 240629 D 395960 CDS YP_001989258.1 192288653 6407866 241426..242064 1 NC_011004.1 KEGG: bja:bll0506 hypothetical protein; hypothetical protein 242064 6407866 Rpal_0222 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989258.1 241426 D 395960 CDS YP_001989259.1 192288654 6407867 242180..242959 1 NC_011004.1 PFAM: oxidoreductase molybdopterin binding; KEGG: nha:Nham_3598 oxidoreductase, molybdopterin binding; molybdopterin binding oxidoreductase 242959 6407867 Rpal_0223 Rhodopseudomonas palustris TIE-1 molybdopterin binding oxidoreductase YP_001989259.1 242180 D 395960 CDS YP_001989260.1 192288655 6407868 243232..243750 1 NC_011004.1 PFAM: superoxide dismutase copper/zinc binding; KEGG: nha:Nham_3597 superoxide dismutase, copper/zinc binding; copper/zinc binding superoxide dismutase 243750 6407868 Rpal_0224 Rhodopseudomonas palustris TIE-1 copper/zinc binding superoxide dismutase YP_001989260.1 243232 D 395960 CDS YP_001989261.1 192288656 6407869 complement(243816..245003) 1 NC_011004.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: bja:blr0503 hypothetical protein; hypothetical protein 245003 6407869 Rpal_0225 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989261.1 243816 R 395960 CDS YP_001989262.1 192288657 6407870 245224..246336 1 NC_011004.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 246336 6407870 Rpal_0226 Rhodopseudomonas palustris TIE-1 3-isopropylmalate dehydrogenase YP_001989262.1 245224 D 395960 CDS YP_001989263.1 192288658 6407871 complement(246494..246895) 1 NC_011004.1 KEGG: nha:Nham_3594 hypothetical protein; hypothetical protein 246895 6407871 Rpal_0227 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989263.1 246494 R 395960 CDS YP_001989264.1 192288659 6407872 complement(247039..247848) 1 NC_011004.1 KEGG: bbt:BBta_0343 hypothetical protein; hypothetical protein 247848 6407872 Rpal_0228 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989264.1 247039 R 395960 CDS YP_001989265.1 192288660 6407873 247963..248997 1 NC_011004.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 248997 6407873 Rpal_0229 Rhodopseudomonas palustris TIE-1 aspartate-semialdehyde dehydrogenase YP_001989265.1 247963 D 395960 CDS YP_001989266.1 192288661 6407874 249133..249687 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bra:BRADO0359 hypothetical protein; hypothetical protein 249687 6407874 Rpal_0230 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989266.1 249133 D 395960 CDS YP_001989267.1 192288662 6407875 complement(249839..250483) 1 NC_011004.1 PFAM: carbonic anhydrase; KEGG: bbt:BBta_0346 carbonic anhydrase 2; carbonate dehydratase 250483 6407875 Rpal_0231 Rhodopseudomonas palustris TIE-1 carbonate dehydratase YP_001989267.1 249839 R 395960 CDS YP_001989268.1 192288663 6407876 250664..251542 1 NC_011004.1 PFAM: HpcH/HpaI aldolase; KEGG: bbt:BBta_0347 citrate lyase beta chain; citryl-CoA lyase 251542 6407876 Rpal_0232 Rhodopseudomonas palustris TIE-1 citryl-CoA lyase YP_001989268.1 250664 D 395960 CDS YP_001989269.1 192288664 6407877 complement(251718..253409) 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mag:amb3991 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 253409 6407877 Rpal_0233 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001989269.1 251718 R 395960 CDS YP_001989270.1 192288665 6407878 complement(254159..254764) 1 NC_011004.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 254764 leuD 6407878 leuD Rhodopseudomonas palustris TIE-1 isopropylmalate isomerase small subunit YP_001989270.1 254159 R 395960 CDS YP_001989271.1 192288666 6407879 complement(254850..255263) 1 NC_011004.1 PFAM: protein of unknown function DUF1025; KEGG: bja:blr0494 hypothetical protein; hypothetical protein 255263 6407879 Rpal_0235 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989271.1 254850 R 395960 CDS YP_001989272.1 192288667 6407880 255369..255716 1 NC_011004.1 KEGG: bbt:BBta_0353 exported protein of unknown function; hypothetical protein 255716 6407880 Rpal_0236 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989272.1 255369 D 395960 CDS YP_001989273.1 192288668 6407881 255948..256229 1 NC_011004.1 KEGG: nwi:Nwi_2788 hypothetical protein; hypothetical protein 256229 6407881 Rpal_0237 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989273.1 255948 D 395960 CDS YP_001989274.1 192288669 6407882 256340..256651 1 NC_011004.1 KEGG: nha:Nham_3587 hypothetical protein; hypothetical protein 256651 6407882 Rpal_0238 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989274.1 256340 D 395960 CDS YP_001989275.1 192288670 6407883 256772..257443 1 NC_011004.1 KEGG: bra:BRADO0372 conserved hypothetical protein (partial); hypothetical protein 257443 6407883 Rpal_0239 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989275.1 256772 D 395960 CDS YP_001989276.1 192288671 6407884 complement(257510..258919) 1 NC_011004.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 258919 6407884 Rpal_0240 Rhodopseudomonas palustris TIE-1 isopropylmalate isomerase large subunit YP_001989276.1 257510 R 395960 CDS YP_001989277.1 192288672 6407885 complement(258996..259109) 1 NC_011004.1 KEGG: nha:Nham_3583 hypothetical protein; hypothetical protein 259109 6407885 Rpal_0241 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989277.1 258996 R 395960 CDS YP_001989278.1 192288673 6407886 complement(259229..259618) 1 NC_011004.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 259618 rplS 6407886 rplS Rhodopseudomonas palustris TIE-1 50S ribosomal protein L19 YP_001989278.1 259229 R 395960 CDS YP_001989279.1 192288674 6407887 complement(259732..260478) 1 NC_011004.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 260478 trmD 6407887 trmD Rhodopseudomonas palustris TIE-1 tRNA (guanine-N(1)-)-methyltransferase YP_001989279.1 259732 R 395960 CDS YP_001989280.1 192288675 6407888 complement(260621..261151) 1 NC_011004.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 261151 rimM 6407888 rimM Rhodopseudomonas palustris TIE-1 16S rRNA-processing protein RimM YP_001989280.1 260621 R 395960 CDS YP_001989281.1 192288676 6407889 complement(261164..261484) 1 NC_011004.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 261484 rpsP 6407889 rpsP Rhodopseudomonas palustris TIE-1 30S ribosomal protein S16 YP_001989281.1 261164 R 395960 CDS YP_001989282.1 192288677 6407890 complement(261654..263204) 1 NC_011004.1 KEGG: bbt:BBta_0368 signal recognition particle with 4.5 RNA, ffh family; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; signal recognition particle protein 263204 6407890 Rpal_0246 Rhodopseudomonas palustris TIE-1 signal recognition particle protein YP_001989282.1 261654 R 395960 CDS YP_001989283.1 192288678 6407891 263657..263926 1 NC_011004.1 KEGG: sus:Acid_1771 prevent-host-death family protein; prevent-host-death family protein 263926 6407891 Rpal_0247 Rhodopseudomonas palustris TIE-1 prevent-host-death family protein YP_001989283.1 263657 D 395960 CDS YP_001989284.1 192288679 6407892 264152..265213 1 NC_011004.1 PFAM: beta-lactamase domain protein; KEGG: bra:BRADO0380 metallo-hydrolase/oxidoreductase; beta-lactamase domain-containing protein 265213 6407892 Rpal_0248 Rhodopseudomonas palustris TIE-1 beta-lactamase domain-containing protein YP_001989284.1 264152 D 395960 CDS YP_001989285.1 192288680 6407893 complement(265223..265921) 1 NC_011004.1 PFAM: protein of unknown function DUF541; KEGG: nha:Nham_3577 protein of unknown function DUF541; hypothetical protein 265921 6407893 Rpal_0249 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989285.1 265223 R 395960 CDS YP_001989286.1 192288681 6407894 complement(265918..266700) 1 NC_011004.1 PFAM: transcription activator effector binding; KEGG: bja:blr0478 hypothetical protein; transcription activator effector binding 266700 6407894 Rpal_0250 Rhodopseudomonas palustris TIE-1 transcription activator effector binding YP_001989286.1 265918 R 395960 CDS YP_001989287.1 192288682 6407895 266937..267818 1 NC_011004.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 267818 dapF 6407895 dapF Rhodopseudomonas palustris TIE-1 diaminopimelate epimerase YP_001989287.1 266937 D 395960 CDS YP_001989288.1 192288683 6407896 267818..269089 1 NC_011004.1 KEGG: bra:BRADO0384 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein 269089 6407896 Rpal_0252 Rhodopseudomonas palustris TIE-1 MiaB-like tRNA modifying protein YP_001989288.1 267818 D 395960 CDS YP_001989289.1 192288684 6407897 complement(269099..269761) 1 NC_011004.1 KEGG: xau:Xaut_1107 hypothetical protein; hypothetical protein 269761 6407897 Rpal_0253 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989289.1 269099 R 395960 CDS YP_001989290.1 192288685 6407898 complement(269947..270360) 1 NC_011004.1 PFAM: protein of unknown function DUF55; KEGG: bja:blr0569 hypothetical protein; hypothetical protein 270360 6407898 Rpal_0254 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989290.1 269947 R 395960 CDS YP_001989291.1 192288686 6407899 complement(270363..271352) 1 NC_011004.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 271352 gpsA 6407899 gpsA Rhodopseudomonas palustris TIE-1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001989291.1 270363 R 395960 CDS YP_001989292.1 192288687 6407900 complement(271388..272479) 1 NC_011004.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 272479 6407900 Rpal_0256 Rhodopseudomonas palustris TIE-1 DNA-binding/iron metalloprotein/AP endonuclease YP_001989292.1 271388 R 395960 CDS YP_001989293.1 192288688 6407901 272704..273450 1 NC_011004.1 PFAM: uroporphyrinogen III synthase HEM4; KEGG: bja:bll0566 uroporphyrinogen III synthase; uroporphyrinogen III synthase HEM4 273450 6407901 Rpal_0257 Rhodopseudomonas palustris TIE-1 uroporphyrinogen III synthase HEM4 YP_001989293.1 272704 D 395960 CDS YP_001989294.1 192288689 6407902 273502..274911 1 NC_011004.1 KEGG: nha:Nham_0564 hypothetical protein; hypothetical protein 274911 6407902 Rpal_0258 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989294.1 273502 D 395960 CDS YP_001989295.1 192288690 6407903 274920..276617 1 NC_011004.1 PFAM: HemY domain protein; KEGG: bja:bll0564 hypothetical protein; HemY domain-containing protein 276617 6407903 Rpal_0259 Rhodopseudomonas palustris TIE-1 HemY domain-containing protein YP_001989295.1 274920 D 395960 CDS YP_001989296.1 192288691 6407905 complement(277309..278091) 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; KEGG: atc:AGR_C_4040 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 278091 6407905 Rpal_0260 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001989296.1 277309 R 395960 CDS YP_001989297.1 192288692 6407906 278933..279724 1 NC_011004.1 KEGG: mex:Mext_4818 cobalamin B12-binding; cobalamin B12-binding 279724 6407906 Rpal_0261 Rhodopseudomonas palustris TIE-1 cobalamin B12-binding YP_001989297.1 278933 D 395960 CDS YP_001989298.1 192288693 6407907 279898..280983 1 NC_011004.1 KEGG: nwi:Nwi_2399 hypothetical protein; hypothetical protein 280983 6407907 Rpal_0262 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989298.1 279898 D 395960 CDS YP_001989299.1 192288694 6407908 complement(281011..282309) 1 NC_011004.1 PFAM: ribulose bisphosphate carboxylase large chain; KEGG: plt:Plut_0412 ribulose-bisphosphate carboxylase; RuBisCO-like protein 282309 6407908 Rpal_0263 Rhodopseudomonas palustris TIE-1 RuBisCO-like protein YP_001989299.1 281011 R 395960 CDS YP_001989300.1 192288695 6407909 complement(282424..282846) 1 NC_011004.1 PFAM: protein of unknown function UPF0047; KEGG: cph:Cpha266_0672 protein of unknown function UPF0047; hypothetical protein 282846 6407909 Rpal_0264 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989300.1 282424 R 395960 CDS YP_001989301.1 192288696 6407910 283072..285009 1 NC_011004.1 PFAM: acyltransferase 3; KEGG: bte:BTH_I1858 acyltransferase family protein; acyltransferase 3 285009 6407910 Rpal_0265 Rhodopseudomonas palustris TIE-1 acyltransferase 3 YP_001989301.1 283072 D 395960 CDS YP_001989302.1 192288697 6407911 complement(285062..286228) 1 NC_011004.1 KEGG: fps:FP1412 probable sugar O-acetyltransferase precursor; hypothetical protein 286228 6407911 Rpal_0266 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989302.1 285062 R 395960 CDS YP_001989303.1 192288698 6407912 complement(286231..287643) 1 NC_011004.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: mag:amb1065 predicted membrane protein; membrane bound O-acyl transferase MBOAT family protein 287643 6407912 Rpal_0267 Rhodopseudomonas palustris TIE-1 membrane bound O-acyl transferase MBOAT family protein YP_001989303.1 286231 R 395960 CDS YP_001989304.1 192288699 6407914 288238..289158 1 NC_011004.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: bra:BRADO0321 thioredoxin; thioredoxin 289158 6407914 Rpal_0268 Rhodopseudomonas palustris TIE-1 thioredoxin YP_001989304.1 288238 D 395960 CDS YP_001989305.1 192288700 6407915 289185..289862 1 NC_011004.1 PFAM: peptidase S16 lon domain protein; KEGG: bja:blr0595 hypothetical protein; peptidase S16 lon domain-containing protein 289862 6407915 Rpal_0269 Rhodopseudomonas palustris TIE-1 peptidase S16 lon domain-containing protein YP_001989305.1 289185 D 395960 CDS YP_001989306.1 192288701 6407916 289952..290149 1 NC_011004.1 PFAM: protein of unknown function DUF343; KEGG: nha:Nham_0083 protein of unknown function DUF343; hypothetical protein 290149 6407916 Rpal_0270 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989306.1 289952 D 395960 CDS YP_001989307.1 192288702 6407917 complement(290285..291505) 1 NC_011004.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: nwi:Nwi_0079 2-octaprenyl-6-methoxyphenyl hydroxylase; 2-octaprenyl-6-methoxyphenyl hydroxylase 291505 6407917 Rpal_0271 Rhodopseudomonas palustris TIE-1 2-octaprenyl-6-methoxyphenyl hydroxylase YP_001989307.1 290285 R 395960 CDS YP_001989308.1 192288703 6407918 291745..292620 1 NC_011004.1 KEGG: bja:blr0604 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 292620 6407918 Rpal_0272 Rhodopseudomonas palustris TIE-1 acyl-CoA thioesterase II YP_001989308.1 291745 D 395960 CDS YP_001989309.1 192288704 6407919 complement(292654..293487) 1 NC_011004.1 KEGG: scl:sce3213 hypothetical protein; hypothetical protein 293487 6407919 Rpal_0273 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989309.1 292654 R 395960 CDS YP_001989310.1 192288705 6407920 293576..294157 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: sal:Sala_0735 transcriptional regulator, TetR family; TetR family transcriptional regulator 294157 6407920 Rpal_0274 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001989310.1 293576 D 395960 CDS YP_001989311.1 192288706 6407921 294303..294641 1 NC_011004.1 PFAM: nitrogen regulatory protein P-II; KEGG: bbt:BBta_0295 regulatory protein for nitrogen assimilation, regulates GlnL , GlnE , and AmtB; nitrogen regulatory protein P-II 294641 6407921 Rpal_0275 Rhodopseudomonas palustris TIE-1 nitrogen regulatory protein P-II YP_001989311.1 294303 D 395960 CDS YP_001989312.1 192288707 6407922 294716..296047 1 NC_011004.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: bbt:BBta_0294 ammonium transport protein (Amt family); ammonium transporter 296047 6407922 Rpal_0276 Rhodopseudomonas palustris TIE-1 ammonium transporter YP_001989312.1 294716 D 395960 CDS YP_001989313.1 192288708 6407923 296357..296695 1 NC_011004.1 PFAM: nitrogen regulatory protein P-II; KEGG: bja:blr0612 nitrogen regulatory protein PII; nitrogen regulatory protein P-II 296695 6407923 Rpal_0277 Rhodopseudomonas palustris TIE-1 nitrogen regulatory protein P-II YP_001989313.1 296357 D 395960 CDS YP_001989314.1 192288709 6407924 296733..298175 1 NC_011004.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: bja:blr0613 ammonium transporter; ammonium transporter 298175 6407924 Rpal_0278 Rhodopseudomonas palustris TIE-1 ammonium transporter YP_001989314.1 296733 D 395960 CDS YP_001989315.1 192288710 6407925 298294..298641 1 NC_011004.1 PFAM: DNA polymerase beta domain protein region; KEGG: cak:Caul_1178 DNA polymerase beta domain protein region; DNA polymerase beta domain-containing protein 298641 6407925 Rpal_0279 Rhodopseudomonas palustris TIE-1 DNA polymerase beta domain-containing protein YP_001989315.1 298294 D 395960 CDS YP_001989316.1 192288711 6407926 298743..298988 1 NC_011004.1 PFAM: protein of unknown function DUF86; KEGG: mrd:Mrad2831_3537 protein of unknown function DUF86; hypothetical protein 298988 6407926 Rpal_0280 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989316.1 298743 D 395960 CDS YP_001989317.1 192288712 6407927 299111..300337 1 NC_011004.1 PFAM: aminotransferase class I and II; KEGG: nha:Nham_0089 aminotransferase, class I and II; class I and II aminotransferase 300337 6407927 Rpal_0281 Rhodopseudomonas palustris TIE-1 class I and II aminotransferase YP_001989317.1 299111 D 395960 CDS YP_001989318.1 192288713 6407928 300351..302819 1 NC_011004.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: bja:blr0616 cell division protein; cell division protein FtsK 302819 6407928 Rpal_0282 Rhodopseudomonas palustris TIE-1 cell division protein FtsK YP_001989318.1 300351 D 395960 CDS YP_001989319.1 192288714 6407929 302837..303778 1 NC_011004.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: bbt:BBta_0134 exported protein of unknown function; outer membrane lipoprotein carrier protein LolA 303778 6407929 Rpal_0283 Rhodopseudomonas palustris TIE-1 outer membrane lipoprotein carrier protein LolA YP_001989319.1 302837 D 395960 CDS YP_001989320.1 192288715 6407930 304067..304879 1 NC_011004.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bja:blr0618 exodeoxyribonuclease III; exodeoxyribonuclease III Xth 304879 6407930 Rpal_0284 Rhodopseudomonas palustris TIE-1 exodeoxyribonuclease III Xth YP_001989320.1 304067 D 395960 CDS YP_001989321.1 192288716 6407931 complement(304931..305380) 1 NC_011004.1 PFAM: cyclic nucleotide-binding; KEGG: bja:bll0619 hypothetical protein; cyclic nucleotide-binding protein 305380 6407931 Rpal_0285 Rhodopseudomonas palustris TIE-1 cyclic nucleotide-binding protein YP_001989321.1 304931 R 395960 CDS YP_001989322.1 192288717 6407932 complement(305420..306106) 1 NC_011004.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:bll0620 two-component response regulator; winged helix family two component transcriptional regulator 306106 6407932 Rpal_0286 Rhodopseudomonas palustris TIE-1 winged helix family two component transcriptional regulator YP_001989322.1 305420 R 395960 CDS YP_001989323.1 192288718 6407933 306271..306834 1 NC_011004.1 KEGG: nha:Nham_0095 hypothetical protein; hypothetical protein 306834 6407933 Rpal_0287 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989323.1 306271 D 395960 CDS YP_001989324.1 192288719 6407934 complement(306916..307575) 1 NC_011004.1 PFAM: alanine racemase domain protein; KEGG: bbt:BBta_0174 exported protein of unknown function; alanine racemase domain-containing protein 307575 6407934 Rpal_0288 Rhodopseudomonas palustris TIE-1 alanine racemase domain-containing protein YP_001989324.1 306916 R 395960 CDS YP_001989325.1 192288720 6407935 307746..309419 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: bja:blr0624 hypothetical protein; diguanylate cyclase 309419 6407935 Rpal_0289 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001989325.1 307746 D 395960 CDS YP_001989326.1 192288721 6407936 309625..312255 1 NC_011004.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 312255 leuS 6407936 leuS Rhodopseudomonas palustris TIE-1 leucyl-tRNA synthetase YP_001989326.1 309625 D 395960 CDS YP_001989327.1 192288722 6407937 312242..312805 1 NC_011004.1 KEGG: nha:Nham_0099 hypothetical protein; hypothetical protein 312805 6407937 Rpal_0291 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989327.1 312242 D 395960 CDS YP_001989328.1 192288723 6407938 312862..313893 1 NC_011004.1 required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 313893 holA 6407938 holA Rhodopseudomonas palustris TIE-1 DNA polymerase III subunit delta YP_001989328.1 312862 D 395960 CDS YP_001989329.1 192288724 6407939 complement(314155..315045) 1 NC_011004.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: nwi:Nwi_0094 ParB-like partition protein; parB-like partition protein 315045 6407939 Rpal_0293 Rhodopseudomonas palustris TIE-1 parB-like partition protein YP_001989329.1 314155 R 395960 CDS YP_001989330.1 192288725 6407940 complement(315218..316072) 1 NC_011004.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: nha:Nham_0103 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 316072 6407940 Rpal_0294 Rhodopseudomonas palustris TIE-1 Cobyrinic acid ac-diamide synthase YP_001989330.1 315218 R 395960 CDS YP_001989331.1 192288726 6407941 complement(316100..316771) 1 NC_011004.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 316771 gidB 6407941 gidB Rhodopseudomonas palustris TIE-1 16S rRNA methyltransferase GidB YP_001989331.1 316100 R 395960 CDS YP_001989332.1 192288727 6407942 complement(316944..318812) 1 NC_011004.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 318812 6407942 Rpal_0296 Rhodopseudomonas palustris TIE-1 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001989332.1 316944 R 395960 CDS YP_001989333.1 192288728 6407943 complement(318978..320303) 1 NC_011004.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 320303 trmE 6407943 trmE Rhodopseudomonas palustris TIE-1 tRNA modification GTPase TrmE YP_001989333.1 318978 R 395960 CDS YP_001989334.1 192288729 6407944 complement(320391..321656) 1 NC_011004.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 321656 rho 6407944 rho Rhodopseudomonas palustris TIE-1 transcription termination factor Rho YP_001989334.1 320391 R 395960 CDS YP_001989335.1 192288730 6407945 complement(321916..322356) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bra:BRADO0198 hypothetical protein; hypothetical protein 322356 6407945 Rpal_0299 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989335.1 321916 R 395960 CDS YP_001989336.1 192288731 6407946 322811..323650 1 NC_011004.1 PFAM: protein of unknown function DUF299; KEGG: bbt:BBta_0161 hypothetical protein; hypothetical protein 323650 6407946 Rpal_0300 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989336.1 322811 D 395960 CDS YP_001989337.1 192288732 6407947 323647..324255 1 NC_011004.1 PFAM: Maf family protein; KEGG: bja:blr0638 Maf-like protein; Maf family protein 324255 6407947 Rpal_0301 Rhodopseudomonas palustris TIE-1 Maf family protein YP_001989337.1 323647 D 395960 CDS YP_001989338.1 192288733 6407948 324352..324951 1 NC_011004.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 324951 coaE 6407948 coaE Rhodopseudomonas palustris TIE-1 dephospho-CoA kinase YP_001989338.1 324352 D 395960 CDS YP_001989339.1 192288734 6407949 324987..325685 1 NC_011004.1 KEGG: bja:blr0640 DNA polymerase III epsilon chain; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; DNA polymerase III subunit epsilon 325685 6407949 Rpal_0303 Rhodopseudomonas palustris TIE-1 DNA polymerase III subunit epsilon YP_001989339.1 324987 D 395960 CDS YP_001989340.1 192288735 6407950 complement(325765..326238) 1 NC_011004.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 326238 6407950 Rpal_0304 Rhodopseudomonas palustris TIE-1 preprotein translocase subunit SecB YP_001989340.1 325765 R 395960 CDS YP_001989341.1 192288736 6407951 326702..327409 1 NC_011004.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: bja:blr0642 hypothetical protein; import inner membrane translocase subunit Tim44 327409 6407951 Rpal_0305 Rhodopseudomonas palustris TIE-1 import inner membrane translocase subunit Tim44 YP_001989341.1 326702 D 395960 CDS YP_001989342.1 192288737 6407952 327387..328880 1 NC_011004.1 PFAM: MltA domain protein; 3D domain protein; KEGG: bbt:BBta_0155 membrane-bound lytic murein transglycosylase; MltA domain-containing protein 328880 6407952 Rpal_0306 Rhodopseudomonas palustris TIE-1 MltA domain-containing protein YP_001989342.1 327387 D 395960 CDS YP_001989343.1 192288738 6407953 328886..329470 1 NC_011004.1 PFAM: Smr protein/MutS2; KEGG: bja:blr0644 hypothetical protein; Smr protein/MutS2 329470 6407953 Rpal_0307 Rhodopseudomonas palustris TIE-1 Smr protein/MutS2 YP_001989343.1 328886 D 395960 CDS YP_001989344.1 192288739 6407954 complement(329807..331108) 1 NC_011004.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 331108 hslU 6407954 hslU Rhodopseudomonas palustris TIE-1 ATP-dependent protease ATP-binding subunit HslU YP_001989344.1 329807 R 395960 CDS YP_001989345.1 192288740 6407955 complement(331150..331761) 1 NC_011004.1 KEGG: bbt:BBta_0150 hypothetical protein; hypothetical protein 331761 6407955 Rpal_0309 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989345.1 331150 R 395960 CDS YP_001989346.1 192288741 6407956 complement(331758..332327) 1 NC_011004.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 332327 6407956 Rpal_0310 Rhodopseudomonas palustris TIE-1 ATP-dependent protease peptidase subunit YP_001989346.1 331758 R 395960 CDS YP_001989347.1 192288742 6407957 332515..333108 1 NC_011004.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 333108 hisB 6407957 hisB Rhodopseudomonas palustris TIE-1 imidazoleglycerol-phosphate dehydratase YP_001989347.1 332515 D 395960 CDS YP_001989348.1 192288743 6407958 333136..333657 1 NC_011004.1 KEGG: nha:Nham_0123 hypothetical protein; hypothetical protein 333657 6407958 Rpal_0312 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989348.1 333136 D 395960 CDS YP_001989349.1 192288744 6407959 333654..334304 1 NC_011004.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 334304 hisH 6407959 hisH Rhodopseudomonas palustris TIE-1 imidazole glycerol phosphate synthase subunit HisH YP_001989349.1 333654 D 395960 CDS YP_001989350.1 192288745 6407960 334301..335038 1 NC_011004.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 335038 6407960 Rpal_0314 Rhodopseudomonas palustris TIE-1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_001989350.1 334301 D 395960 CDS YP_001989351.1 192288746 6407961 335049..335816 1 NC_011004.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 335816 6407961 Rpal_0315 Rhodopseudomonas palustris TIE-1 imidazole glycerol phosphate synthase subunit HisF YP_001989351.1 335049 D 395960 CDS YP_001989352.1 192288747 6407962 335870..336193 1 NC_011004.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 336193 hisE 6407962 hisE Rhodopseudomonas palustris TIE-1 phosphoribosyl-ATP pyrophosphatase YP_001989352.1 335870 D 395960 CDS YP_001989353.1 192288748 6407963 336268..337224 1 NC_011004.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 337224 6407963 Rpal_0317 Rhodopseudomonas palustris TIE-1 pantothenate kinase YP_001989353.1 336268 D 395960 CDS YP_001989354.1 192288749 6407964 complement(337371..338321) 1 NC_011004.1 KEGG: azc:AZC_0076 hemolysin; hemolysin 338321 6407964 Rpal_0318 Rhodopseudomonas palustris TIE-1 hemolysin YP_001989354.1 337371 R 395960 CDS YP_001989355.1 192288750 6407965 complement(338482..340392) 1 NC_011004.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bja:bll0659 two-component hybrid sensor and regulator; integral membrane sensor hybrid histidine kinase 340392 6407965 Rpal_0319 Rhodopseudomonas palustris TIE-1 integral membrane sensor hybrid histidine kinase YP_001989355.1 338482 R 395960 CDS YP_001989356.1 192288751 6407966 complement(340519..342057) 1 NC_011004.1 KEGG: bja:bll0661 hypothetical protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase AAA; SMART: ATPase AAA; Mg chelatase subunit ChlI 342057 6407966 Rpal_0320 Rhodopseudomonas palustris TIE-1 Mg chelatase subunit ChlI YP_001989356.1 340519 R 395960 CDS YP_001989357.1 192288752 6407967 complement(342157..342381) 1 NC_011004.1 hypothetical protein 342381 6407967 Rpal_0321 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989357.1 342157 R 395960 CDS YP_001989358.1 192288753 6407968 complement(342378..343034) 1 NC_011004.1 KEGG: bra:BRADO0941 autoinducer (acylhomoserine lactone) synthase; autoinducer (acylhomoserine lactone) synthase 343034 6407968 Rpal_0322 Rhodopseudomonas palustris TIE-1 autoinducer (acylhomoserine lactone) synthase YP_001989358.1 342378 R 395960 CDS YP_001989359.1 192288754 6407969 complement(343120..343851) 1 NC_011004.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: bbt:BBta_7112 N-acyl homoserine lactone transcriptional regulator, LuxR-like protein; LuxR family transcriptional regulator 343851 6407969 Rpal_0323 Rhodopseudomonas palustris TIE-1 LuxR family transcriptional regulator YP_001989359.1 343120 R 395960 CDS YP_001989360.1 192288755 6407970 complement(344088..345029) 1 NC_011004.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 345029 6407970 Rpal_0324 Rhodopseudomonas palustris TIE-1 glutathione synthetase YP_001989360.1 344088 R 395960 CDS YP_001989361.1 192288756 6407971 complement(345102..345494) 1 NC_011004.1 PFAM: protein of unknown function UPF0102; KEGG: bra:BRADO0179 hypothetical protein; hypothetical protein 345494 6407971 Rpal_0325 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989361.1 345102 R 395960 CDS YP_001989362.1 192288757 6407972 complement(345481..346437) 1 NC_011004.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nha:Nham_0147 protein of unknown function UPF0011; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 346437 6407972 Rpal_0326 Rhodopseudomonas palustris TIE-1 uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_001989362.1 345481 R 395960 CDS YP_001989363.1 192288758 6407973 346656..347855 1 NC_011004.1 KEGG: nha:Nham_0148 extracellular ligand-binding receptor; extracellular ligand-binding receptor 347855 6407973 Rpal_0327 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001989363.1 346656 D 395960 CDS YP_001989364.1 192288759 6407974 complement(347873..348235) 1 NC_011004.1 PFAM: helix-turn-helix HxlR type; KEGG: pla:Plav_3490 transcriptional regulator, HxlR family; HxlR family transcriptional regulator 348235 6407974 Rpal_0328 Rhodopseudomonas palustris TIE-1 HxlR family transcriptional regulator YP_001989364.1 347873 R 395960 CDS YP_001989365.1 192288760 6407975 348306..348635 1 NC_011004.1 KEGG: pde:Pden_4576 hypothetical protein; hypothetical protein 348635 6407975 Rpal_0329 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989365.1 348306 D 395960 CDS YP_001989366.1 192288761 6407976 complement(348640..349797) 1 NC_011004.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 349797 6407976 Rpal_0330 Rhodopseudomonas palustris TIE-1 coproporphyrinogen III oxidase YP_001989366.1 348640 R 395960 CDS YP_001989367.1 192288762 6407977 complement(349787..350419) 1 NC_011004.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 350419 6407977 Rpal_0331 Rhodopseudomonas palustris TIE-1 deoxyribonucleotide triphosphate pyrophosphatase YP_001989367.1 349787 R 395960 CDS YP_001989368.1 192288763 6407978 complement(350471..351184) 1 NC_011004.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 351184 rph 6407978 rph Rhodopseudomonas palustris TIE-1 ribonuclease PH YP_001989368.1 350471 R 395960 CDS YP_001989369.1 192288764 6407979 351340..352428 1 NC_011004.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 352428 hrcA 6407979 hrcA Rhodopseudomonas palustris TIE-1 heat-inducible transcription repressor YP_001989369.1 351340 D 395960 CDS YP_001989370.1 192288765 6407980 352519..353142 1 NC_011004.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 353142 6407980 Rpal_0334 Rhodopseudomonas palustris TIE-1 heat shock protein GrpE YP_001989370.1 352519 D 395960 CDS YP_001989371.1 192288766 6407981 complement(353249..354190) 1 NC_011004.1 KEGG: bja:bll0679 hypothetical protein; hypothetical protein 354190 6407981 Rpal_0335 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989371.1 353249 R 395960 CDS YP_001989372.1 192288767 6407982 354525..356420 1 NC_011004.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 356420 dnaK 6407982 dnaK Rhodopseudomonas palustris TIE-1 molecular chaperone DnaK YP_001989372.1 354525 D 395960 CDS YP_001989373.1 192288768 6407983 356635..357774 1 NC_011004.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 357774 6407983 Rpal_0337 Rhodopseudomonas palustris TIE-1 chaperone protein DnaJ YP_001989373.1 356635 D 395960 CDS YP_001989374.1 192288769 6407984 357868..358473 1 NC_011004.1 SMART: ribosomal RNA adenine methylase transferase; KEGG: bja:blr0681 phospholipid N-methyltransferase; ribosomal RNA adenine methylase transferase 358473 6407984 Rpal_0338 Rhodopseudomonas palustris TIE-1 ribosomal RNA adenine methylase transferase YP_001989374.1 357868 D 395960 CDS YP_001989375.1 192288770 6407985 358575..359156 1 NC_011004.1 PFAM: NADPH-dependent FMN reductase; KEGG: bja:blr0682 oxidoreductase; NADPH-dependent FMN reductase 359156 6407985 Rpal_0339 Rhodopseudomonas palustris TIE-1 NADPH-dependent FMN reductase YP_001989375.1 358575 D 395960 CDS YP_001989376.1 192288771 6407986 359164..359877 1 NC_011004.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 359877 6407986 Rpal_0340 Rhodopseudomonas palustris TIE-1 orotidine 5'-phosphate decarboxylase YP_001989376.1 359164 D 395960 CDS YP_001989377.1 192288772 6407987 359903..360211 1 NC_011004.1 PFAM: protein of unknown function DUF1330; KEGG: bra:BRADO0159 conserved hypothetical protein; dimeric alpha-beta barrel domain; hypothetical protein 360211 6407987 Rpal_0341 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989377.1 359903 D 395960 CDS YP_001989378.1 192288773 6407988 360308..361123 1 NC_011004.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 361123 6407988 Rpal_0342 Rhodopseudomonas palustris TIE-1 dihydrodipicolinate reductase YP_001989378.1 360308 D 395960 CDS YP_001989379.1 192288774 6407989 complement(361203..362717) 1 NC_011004.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 362717 6407989 Rpal_0343 Rhodopseudomonas palustris TIE-1 phosphoglyceromutase YP_001989379.1 361203 R 395960 CDS YP_001989380.1 192288775 6407990 complement(362809..363741) 1 NC_011004.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: bja:bll0687 transcriptional regulatory protein; AraC family transcriptional regulator 363741 6407990 Rpal_0344 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001989380.1 362809 R 395960 CDS YP_001989381.1 192288776 6407991 complement(363756..364271) 1 NC_011004.1 KEGG: bbt:BBta_0200 membrane protein of unknown function; hypothetical protein 364271 6407991 Rpal_0345 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989381.1 363756 R 395960 CDS YP_001989382.1 192288777 6407992 364294..365079 1 NC_011004.1 KEGG: bra:BRADO0152 endonuclease III DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 365079 6407992 Rpal_0346 Rhodopseudomonas palustris TIE-1 endonuclease III YP_001989382.1 364294 D 395960 CDS YP_001989383.1 192288778 6407993 complement(365195..366760) 1 NC_011004.1 PFAM: peptidase S10 serine carboxypeptidase; KEGG: bja:bll5514 hypothetical protein; peptidase S10 serine carboxypeptidase 366760 6407993 Rpal_0347 Rhodopseudomonas palustris TIE-1 peptidase S10 serine carboxypeptidase YP_001989383.1 365195 R 395960 CDS YP_001989384.1 192288779 6407994 complement(366889..367857) 1 NC_011004.1 TIGRFAM: magnesium chelatase accessory protein; PFAM: alpha/beta hydrolase fold; KEGG: bbt:BBta_6446 alpha/beta hydrolase, protoporphyrin IX magnesium chelatase BchO-like protein; magnesium chelatase accessory protein 367857 6407994 Rpal_0348 Rhodopseudomonas palustris TIE-1 magnesium chelatase accessory protein YP_001989384.1 366889 R 395960 CDS YP_001989385.1 192288780 6407995 complement(368431..369174) 1 NC_011004.1 role in sulfur assimilation; CysZ-like protein 369174 6407995 Rpal_0349 Rhodopseudomonas palustris TIE-1 CysZ-like protein YP_001989385.1 368431 R 395960 CDS YP_001989386.1 192288781 6407996 complement(369262..371094) 1 NC_011004.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 371094 aceK 6407996 aceK Rhodopseudomonas palustris TIE-1 bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_001989386.1 369262 R 395960 CDS YP_001989387.1 192288782 6407997 complement(371430..372281) 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: mbn:Mboo_0148 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 372281 6407997 Rpal_0351 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001989387.1 371430 R 395960 CDS YP_001989388.1 192288783 6407998 372492..373664 1 NC_011004.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: ade:Adeh_3442 DNA-cytosine methyltransferase; DNA-cytosine methyltransferase 373664 6407998 Rpal_0352 Rhodopseudomonas palustris TIE-1 DNA-cytosine methyltransferase YP_001989388.1 372492 D 395960 CDS YP_001989389.1 192288784 6407999 373661..374077 1 NC_011004.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: ppw:PputW619_0683 DNA mismatch endonuclease Vsr; DNA mismatch endonuclease Vsr 374077 6407999 Rpal_0353 Rhodopseudomonas palustris TIE-1 DNA mismatch endonuclease Vsr YP_001989389.1 373661 D 395960 CDS YP_001989390.1 192288785 6408000 374082..374903 1 NC_011004.1 KEGG: ade:Adeh_3444 hypothetical protein; hypothetical protein 374903 6408000 Rpal_0354 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989390.1 374082 D 395960 CDS YP_001989391.1 192288786 6408001 complement(374910..376721) 1 NC_011004.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 376721 6408001 Rpal_0355 Rhodopseudomonas palustris TIE-1 GTP-binding protein LepA YP_001989391.1 374910 R 395960 CDS YP_001989392.1 192288787 6408002 376866..378404 1 NC_011004.1 KEGG: bra:BRADO0839 hypothetical protein; hypothetical protein 378404 6408002 Rpal_0356 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989392.1 376866 D 395960 CDS YP_001989393.1 192288788 6408003 complement(378456..378788) 1 NC_011004.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: nha:Nham_0439 HPrNtr; phosphotransferase system, phosphocarrier protein HPr 378788 6408003 Rpal_0357 Rhodopseudomonas palustris TIE-1 phosphotransferase system, phosphocarrier protein HPr YP_001989393.1 378456 R 395960 CDS YP_001989394.1 192288789 6408004 complement(378785..379186) 1 NC_011004.1 PFAM: PTS system fructose subfamily IIA component; KEGG: nha:Nham_0440 PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA 379186 6408004 Rpal_0358 Rhodopseudomonas palustris TIE-1 PTS system fructose subfamily transporter subunit IIA YP_001989394.1 378785 R 395960 CDS YP_001989395.1 192288790 6408005 complement(379374..379841) 1 NC_011004.1 KEGG: nha:Nham_0441 HPr kinase; HPr kinase 379841 6408005 Rpal_0359 Rhodopseudomonas palustris TIE-1 HPr kinase YP_001989395.1 379374 R 395960 CDS YP_001989396.1 192288791 6408006 complement(379838..381583) 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: nha:Nham_0442 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 381583 6408006 Rpal_0360 Rhodopseudomonas palustris TIE-1 integral membrane sensor signal transduction histidine kinase YP_001989396.1 379838 R 395960 CDS YP_001989397.1 192288792 6408007 complement(381746..382447) 1 NC_011004.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:blr8144 two-component response regulator; winged helix family two component transcriptional regulator 382447 6408007 Rpal_0361 Rhodopseudomonas palustris TIE-1 winged helix family two component transcriptional regulator YP_001989397.1 381746 R 395960 CDS YP_001989398.1 192288793 6408008 382681..383415 1 NC_011004.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bja:bll8143 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 383415 6408008 Rpal_0362 Rhodopseudomonas palustris TIE-1 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001989398.1 382681 D 395960 CDS YP_001989399.1 192288794 6408009 383604..385217 1 NC_011004.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 385217 6408009 Rpal_0363 Rhodopseudomonas palustris TIE-1 phosphoenolpyruvate carboxykinase YP_001989399.1 383604 D 395960 CDS YP_001989400.1 192288795 6408010 385465..388350 1 NC_011004.1 KEGG: sbn:Sbal195_0330 RNA binding S1 domain protein; hypothetical protein 388350 6408010 Rpal_0364 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989400.1 385465 D 395960 CDS YP_001989401.1 192288796 6408011 complement(388605..389480) 1 NC_011004.1 KEGG: azo:azo3831 conserved hypothetical secreted protein; hypothetical protein 389480 6408011 Rpal_0365 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989401.1 388605 R 395960 CDS YP_001989402.1 192288797 6408012 389770..390645 1 NC_011004.1 PFAM: beta-lactamase; KEGG: nha:Nham_0446 beta-lactamase; beta-lactamase 390645 6408012 Rpal_0366 Rhodopseudomonas palustris TIE-1 beta-lactamase YP_001989402.1 389770 D 395960 CDS YP_001989403.1 192288798 6408013 complement(390670..391788) 1 NC_011004.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mmr:Mmar10_0829 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 391788 6408013 Rpal_0367 Rhodopseudomonas palustris TIE-1 endonuclease/exonuclease/phosphatase YP_001989403.1 390670 R 395960 CDS YP_001989404.1 192288799 6408014 complement(391867..392670) 1 NC_011004.1 PFAM: protein of unknown function DUF81; KEGG: xau:Xaut_2893 protein of unknown function DUF81; hypothetical protein 392670 6408014 Rpal_0368 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989404.1 391867 R 395960 CDS YP_001989405.1 192288800 6408015 392764..393660 1 NC_011004.1 PFAM: beta-lactamase domain protein; KEGG: pla:Plav_1618 beta-lactamase domain protein; beta-lactamase domain-containing protein 393660 6408015 Rpal_0369 Rhodopseudomonas palustris TIE-1 beta-lactamase domain-containing protein YP_001989405.1 392764 D 395960 CDS YP_001989406.1 192288801 6408016 393759..394121 1 NC_011004.1 KEGG: bbt:BBta_5525 hypothetical protein; hypothetical protein 394121 6408016 Rpal_0370 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989406.1 393759 D 395960 CDS YP_001989407.1 192288802 6408017 complement(394333..395232) 1 NC_011004.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 395232 6408017 Rpal_0371 Rhodopseudomonas palustris TIE-1 RNA polymerase factor sigma-32 YP_001989407.1 394333 R 395960 CDS YP_001989408.1 192288803 6408018 complement(395454..396458) 1 NC_011004.1 KEGG: bja:blr7336 pseudouridine synthase homolog; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 396458 6408018 Rpal_0372 Rhodopseudomonas palustris TIE-1 RluA family pseudouridine synthase YP_001989408.1 395454 R 395960 CDS YP_001989409.1 192288804 6408019 396501..396836 1 NC_011004.1 KEGG: bja:bll7335 hypothetical protein; hypothetical protein 396836 6408019 Rpal_0373 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989409.1 396501 D 395960 CDS YP_001989410.1 192288805 6408021 complement(397224..399746) 1 NC_011004.1 KEGG: pin:Ping_3328 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 399746 6408021 Rpal_0374 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001989410.1 397224 R 395960 CDS YP_001989411.1 192288806 6408022 complement(399947..401131) 1 NC_011004.1 KEGG: mgm:Mmc1_0771 methionine gamma-lyase; TIGRFAM: methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; methionine gamma-lyase 401131 6408022 Rpal_0375 Rhodopseudomonas palustris TIE-1 methionine gamma-lyase YP_001989411.1 399947 R 395960 CDS YP_001989412.1 192288807 6408023 401242..401727 1 NC_011004.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: oan:Oant_0505 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 401727 6408023 Rpal_0376 Rhodopseudomonas palustris TIE-1 AsnC family transcriptional regulator YP_001989412.1 401242 D 395960 CDS YP_001989413.1 192288808 6408024 complement(401728..402165) 1 NC_011004.1 TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: mlo:mll6589 thioredoxin; thioredoxin 402165 6408024 Rpal_0377 Rhodopseudomonas palustris TIE-1 thioredoxin YP_001989413.1 401728 R 395960 CDS YP_001989414.1 192288809 6408025 complement(402305..403288) 1 NC_011004.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr6070 alcohol dehydrogenase; zinc-binding alcohol dehydrogenase 403288 6408025 Rpal_0378 Rhodopseudomonas palustris TIE-1 zinc-binding alcohol dehydrogenase YP_001989414.1 402305 R 395960 CDS YP_001989415.1 192288810 6408026 complement(403362..403583) 1 NC_011004.1 PFAM: ChaB family protein; KEGG: tcx:Tcr_2071 ChaB; ChaB family protein 403583 6408026 Rpal_0379 Rhodopseudomonas palustris TIE-1 ChaB family protein YP_001989415.1 403362 R 395960 CDS YP_001989416.1 192288811 6408027 403814..404536 1 NC_011004.1 KEGG: nha:Nham_1929 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 404536 6408027 Rpal_0380 Rhodopseudomonas palustris TIE-1 protein-L-isoaspartate O-methyltransferase YP_001989416.1 403814 D 395960 CDS YP_001989417.1 192288812 6408028 404689..405513 1 NC_011004.1 PFAM: UspA domain protein; KEGG: nha:Nham_1926 UspA; UspA domain-containing protein 405513 6408028 Rpal_0381 Rhodopseudomonas palustris TIE-1 UspA domain-containing protein YP_001989417.1 404689 D 395960 CDS YP_001989418.1 192288813 6408029 complement(405710..406990) 1 NC_011004.1 PFAM: glycoside hydrolase family 4; KEGG: bra:BRADO2867 alpha-galactosidase (melibiase); glycoside hydrolase family protein 406990 6408029 Rpal_0382 Rhodopseudomonas palustris TIE-1 glycoside hydrolase family protein YP_001989418.1 405710 R 395960 CDS YP_001989419.1 192288814 6408030 407214..408152 1 NC_011004.1 KEGG: bbt:BBta_6479 carbohydrate kinase PfkB family; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 408152 6408030 Rpal_0383 Rhodopseudomonas palustris TIE-1 1-phosphofructokinase YP_001989419.1 407214 D 395960 CDS YP_001989420.1 192288815 6408031 408267..410579 1 NC_011004.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: bbt:BBta_3664 oxidoreductase alpha (molybdopterin) subunit; oxidoreductase alpha (molybdopterin) subunit 410579 6408031 Rpal_0384 Rhodopseudomonas palustris TIE-1 oxidoreductase alpha (molybdopterin) subunit YP_001989420.1 408267 D 395960 CDS YP_001989421.1 192288816 6408032 410851..412113 1 NC_011004.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 412113 glgC 6408032 glgC Rhodopseudomonas palustris TIE-1 glucose-1-phosphate adenylyltransferase YP_001989421.1 410851 D 395960 CDS YP_001989422.1 192288817 6408033 412110..413561 1 NC_011004.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 413561 6408033 Rpal_0386 Rhodopseudomonas palustris TIE-1 glycogen synthase YP_001989422.1 412110 D 395960 CDS YP_001989423.1 192288818 6408034 413707..414507 1 NC_011004.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 414507 6408034 Rpal_0387 Rhodopseudomonas palustris TIE-1 enoyl-CoA hydratase YP_001989423.1 413707 D 395960 CDS YP_001989424.1 192288819 6408035 414504..415076 1 NC_011004.1 PFAM: protein of unknown function DUF1566; KEGG: pat:Patl_3291 protein of unknown function DUF1566; hypothetical protein 415076 6408035 Rpal_0388 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989424.1 414504 D 395960 CDS YP_001989425.1 192288820 6408036 complement(415092..415811) 1 NC_011004.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 415811 radC 6408036 radC Rhodopseudomonas palustris TIE-1 DNA repair protein RadC YP_001989425.1 415092 R 395960 CDS YP_001989426.1 192288821 6408037 complement(415906..416148) 1 NC_011004.1 KEGG: bbt:BBta_5458 hypothetical protein; hypothetical protein 416148 6408037 Rpal_0390 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989426.1 415906 R 395960 CDS YP_001989427.1 192288822 6408038 416255..417250 1 NC_011004.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: nha:Nham_0450 hypothetical protein; Ku protein 417250 6408038 Rpal_0391 Rhodopseudomonas palustris TIE-1 Ku protein YP_001989427.1 416255 D 395960 CDS YP_001989428.1 192288823 6408039 complement(417363..418187) 1 NC_011004.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: nha:Nham_0431 methionine aminopeptidase, type I; methionine aminopeptidase 418187 6408039 Rpal_0392 Rhodopseudomonas palustris TIE-1 methionine aminopeptidase YP_001989428.1 417363 R 395960 CDS YP_001989429.1 192288824 6408040 418383..420176 1 NC_011004.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 420176 6408040 Rpal_0393 Rhodopseudomonas palustris TIE-1 potassium/proton antiporter YP_001989429.1 418383 D 395960 CDS YP_001989430.1 192288825 6408041 complement(420201..421163) 1 NC_011004.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 421163 mepA 6408041 mepA Rhodopseudomonas palustris TIE-1 penicillin-insensitive murein endopeptidase YP_001989430.1 420201 R 395960 CDS YP_001989431.1 192288826 6408042 421544..423781 1 NC_011004.1 KEGG: bja:bll8156 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 423781 6408042 Rpal_0395 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001989431.1 421544 D 395960 CDS YP_001989432.1 192288827 6408043 complement(423796..425553) 1 NC_011004.1 PFAM: Alkaline phosphatase; KEGG: rru:Rru_A1289 alkaline phosphatase; alkaline phosphatase 425553 6408043 Rpal_0396 Rhodopseudomonas palustris TIE-1 alkaline phosphatase YP_001989432.1 423796 R 395960 CDS YP_001989433.1 192288828 6408044 complement(425794..427131) 1 NC_011004.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 427131 6408044 Rpal_0397 Rhodopseudomonas palustris TIE-1 argininosuccinate synthase YP_001989433.1 425794 R 395960 CDS YP_001989434.1 192288829 6408045 complement(427232..428011) 1 NC_011004.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: nwi:Nwi_2804 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 428011 6408045 Rpal_0398 Rhodopseudomonas palustris TIE-1 PA-phosphatase-like phosphoesterase YP_001989434.1 427232 R 395960 CDS YP_001989435.1 192288830 6408046 complement(428008..428508) 1 NC_011004.1 KEGG: bra:BRADO0245 hypothetical protein; hypothetical protein 428508 6408046 Rpal_0399 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989435.1 428008 R 395960 CDS YP_001989436.1 192288831 6408047 complement(428508..429101) 1 NC_011004.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: pfl:PFL_2689 metal-dependent phosphohydrolase; metal dependent phosphohydrolase 429101 6408047 Rpal_0400 Rhodopseudomonas palustris TIE-1 metal dependent phosphohydrolase YP_001989436.1 428508 R 395960 CDS YP_001989437.1 192288832 6408048 complement(429106..430305) 1 NC_011004.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: radical SAM domain protein; KEGG: bbt:BBta_0241 pyruvate formate lyase activating enzyme 2 (YfgB); radical SAM enzyme, Cfr family 430305 6408048 Rpal_0401 Rhodopseudomonas palustris TIE-1 radical SAM enzyme, Cfr family YP_001989437.1 429106 R 395960 CDS YP_001989438.1 192288833 6408049 complement(430492..431067) 1 NC_011004.1 KEGG: bja:bll0526 hypothetical protein; hypothetical protein 431067 6408049 Rpal_0402 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989438.1 430492 R 395960 CDS YP_001989439.1 192288834 6408050 complement(431221..432057) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll0527 hypothetical oxidoreductase; short-chain dehydrogenase/reductase SDR 432057 6408050 Rpal_0403 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001989439.1 431221 R 395960 CDS YP_001989440.1 192288835 6408051 432289..433263 1 NC_011004.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_0243 quinone oxidoreductase (NADPH) and Zn-dependent alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein 433263 6408051 Rpal_0404 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase zinc-binding domain-containing protein YP_001989440.1 432289 D 395960 CDS YP_001989441.1 192288836 6408052 complement(433392..435527) 1 NC_011004.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bbt:BBta_7528 phytoene dehydrogenase and related proteins; amine oxidase 435527 6408052 Rpal_0405 Rhodopseudomonas palustris TIE-1 amine oxidase YP_001989441.1 433392 R 395960 CDS YP_001989442.1 192288837 6408053 435666..436286 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: ade:Adeh_2875 transcriptional regulator, TetR family; TetR family transcriptional regulator 436286 6408053 Rpal_0406 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001989442.1 435666 D 395960 CDS YP_001989443.1 192288838 6408054 complement(436304..436678) 1 NC_011004.1 PFAM: protein of unknown function DUF1232; KEGG: bja:bll0531 hypothetical protein; hypothetical protein 436678 6408054 Rpal_0407 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989443.1 436304 R 395960 CDS YP_001989444.1 192288839 6408055 complement(436761..437063) 1 NC_011004.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 437063 phhB 6408055 phhB Rhodopseudomonas palustris TIE-1 pterin-4-alpha-carbinolamine dehydratase YP_001989444.1 436761 R 395960 CDS YP_001989445.1 192288840 6408056 437263..438651 1 NC_011004.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bja:blr0533 hypothetical protein; TRAP transporter solute receptor, TAXI family 438651 6408056 Rpal_0409 Rhodopseudomonas palustris TIE-1 TRAP transporter solute receptor, TAXI family YP_001989445.1 437263 D 395960 CDS YP_001989446.1 192288841 6408057 complement(438655..440100) 1 NC_011004.1 PFAM: PepSY-associated TM helix domain protein; KEGG: azc:AZC_2703 hypothetical protein; PepSY-associated TM helix domain-containing protein 440100 6408057 Rpal_0410 Rhodopseudomonas palustris TIE-1 PepSY-associated TM helix domain-containing protein YP_001989446.1 438655 R 395960 CDS YP_001989447.1 192288842 6408058 complement(440105..442381) 1 NC_011004.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azc:AZC_2702 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 442381 6408058 Rpal_0411 Rhodopseudomonas palustris TIE-1 TonB-dependent siderophore receptor YP_001989447.1 440105 R 395960 CDS YP_001989448.1 192288843 6408059 443110..444933 1 NC_011004.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: bra:BRADO0265 GTP-binding protein TypA/BipA (tyrosine phosphorylated protein A); GTP-binding protein TypA 444933 6408059 Rpal_0412 Rhodopseudomonas palustris TIE-1 GTP-binding protein TypA YP_001989448.1 443110 D 395960 CDS YP_001989449.1 192288844 6408060 445043..446311 1 NC_011004.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bja:blr0541 hypothetical protein; amine oxidase 446311 6408060 Rpal_0413 Rhodopseudomonas palustris TIE-1 amine oxidase YP_001989449.1 445043 D 395960 CDS YP_001989450.1 192288845 6408061 446487..446996 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr0547 hypothetical protein; N-acetyltransferase GCN5 446996 6408061 Rpal_0414 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001989450.1 446487 D 395960 CDS YP_001989451.1 192288846 6408062 447073..447609 1 NC_011004.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 447609 6408062 Rpal_0415 Rhodopseudomonas palustris TIE-1 inorganic pyrophosphatase YP_001989451.1 447073 D 395960 CDS YP_001989452.1 192288847 6408063 447645..449126 1 NC_011004.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bra:BRADO0276 hypothetical protein; hypothetical protein 449126 6408063 Rpal_0416 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989452.1 447645 D 395960 CDS YP_001989453.1 192288848 6408064 complement(449315..450202) 1 NC_011004.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 450202 6408064 Rpal_0417 Rhodopseudomonas palustris TIE-1 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001989453.1 449315 R 395960 CDS YP_001989454.1 192288849 6408065 complement(450309..450635) 1 NC_011004.1 PFAM: protein of unknown function DUF167; KEGG: nwi:Nwi_0479 hypothetical protein; hypothetical protein 450635 6408065 Rpal_0418 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989454.1 450309 R 395960 CDS YP_001989455.1 192288850 6408066 complement(450661..450951) 1 NC_011004.1 PFAM: protein of unknown function YGGT; KEGG: nwi:Nwi_0478 protein of unknown function YGGT; hypothetical protein 450951 6408066 Rpal_0419 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989455.1 450661 R 395960 CDS YP_001989456.1 192288851 6408068 complement(451429..452241) 1 NC_011004.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 452241 6408068 Rpal_0420 Rhodopseudomonas palustris TIE-1 enoyl-CoA hydratase YP_001989456.1 451429 R 395960 CDS YP_001989457.1 192288852 6408069 complement(452323..452823) 1 NC_011004.1 KEGG: vei:Veis_3840 protein of unknown function DUF1486; hypothetical protein 452823 6408069 Rpal_0421 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989457.1 452323 R 395960 CDS YP_001989458.1 192288853 6408070 complement(452927..453724) 1 NC_011004.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 453724 6408070 Rpal_0422 Rhodopseudomonas palustris TIE-1 glutamine amidotransferase YP_001989458.1 452927 R 395960 CDS YP_001989459.1 192288854 6408071 complement(453845..454624) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nha:Nham_0606 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 454624 6408071 Rpal_0423 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001989459.1 453845 R 395960 CDS YP_001989460.1 192288855 6408072 complement(454807..455334) 1 NC_011004.1 PFAM: protein of unknown function DUF1332; KEGG: bbt:BBta_0275 hypothetical protein; hypothetical protein 455334 6408072 Rpal_0424 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989460.1 454807 R 395960 CDS YP_001989461.1 192288856 6408073 complement(455471..456856) 1 NC_011004.1 PFAM: cytochrome P450; KEGG: bbt:BBta_0276 cytochrome P450 hydroxylase superfamily protein; cytochrome P450 456856 6408073 Rpal_0425 Rhodopseudomonas palustris TIE-1 cytochrome P450 YP_001989461.1 455471 R 395960 CDS YP_001989462.1 192288857 6408074 complement(456977..457978) 1 NC_011004.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bja:bll0766 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 457978 6408074 Rpal_0426 Rhodopseudomonas palustris TIE-1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001989462.1 456977 R 395960 CDS YP_001989463.1 192288858 6408075 458213..458737 1 NC_011004.1 PFAM: protein of unknown function DUF1058; KEGG: nha:Nham_0044 protein of unknown function DUF1058; hypothetical protein 458737 6408075 Rpal_0427 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989463.1 458213 D 395960 CDS YP_001989464.1 192288859 6408076 complement(458845..459294) 1 NC_011004.1 PFAM: ferric-uptake regulator; KEGG: nwi:Nwi_0035 ferric-uptake regulator; Fur family ferric uptake regulator 459294 6408076 Rpal_0428 Rhodopseudomonas palustris TIE-1 Fur family ferric uptake regulator YP_001989464.1 458845 R 395960 CDS YP_001989465.1 192288860 6408077 459595..460122 1 NC_011004.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 460122 6408077 Rpal_0429 Rhodopseudomonas palustris TIE-1 3-hydroxydecanoyl-ACP dehydratase YP_001989465.1 459595 D 395960 CDS YP_001989466.1 192288861 6408078 460184..461410 1 NC_011004.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 461410 6408078 Rpal_0430 Rhodopseudomonas palustris TIE-1 3-oxoacyl-ACP synthase YP_001989466.1 460184 D 395960 CDS YP_001989467.1 192288862 6408079 461586..462395 1 NC_011004.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 462395 6408079 Rpal_0431 Rhodopseudomonas palustris TIE-1 enoyl-(acyl carrier protein) reductase YP_001989467.1 461586 D 395960 CDS YP_001989468.1 192288863 6408080 complement(462579..463097) 1 NC_011004.1 KEGG: oan:Oant_3604 hypothetical protein; hypothetical protein 463097 6408080 Rpal_0432 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989468.1 462579 R 395960 CDS YP_001989469.1 192288864 6408081 complement(463325..465535) 1 NC_011004.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: mes:Meso_0626 catalase/peroxidase HPI; catalase/peroxidase HPI 465535 6408081 Rpal_0433 Rhodopseudomonas palustris TIE-1 catalase/peroxidase HPI YP_001989469.1 463325 R 395960 CDS YP_001989470.1 192288865 6408082 465805..466743 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nwi:Nwi_0029 regulatory protein, LysR; LysR family transcriptional regulator 466743 6408082 Rpal_0434 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001989470.1 465805 D 395960 CDS YP_001989471.1 192288866 6408083 complement(466755..468437) 1 NC_011004.1 KEGG: bbt:BBta_2308 methyl-accepting chemotaxis receptor/sensory transducer with PAS domain; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 468437 6408083 Rpal_0435 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_001989471.1 466755 R 395960 CDS YP_001989472.1 192288867 6408084 complement(468727..470895) 1 NC_011004.1 KEGG: nwi:Nwi_0028 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 470895 6408084 Rpal_0436 Rhodopseudomonas palustris TIE-1 polynucleotide phosphorylase/polyadenylase YP_001989472.1 468727 R 395960 CDS YP_001989473.1 192288868 6408085 complement(471234..471503) 1 NC_011004.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 471503 rpsO 6408085 rpsO Rhodopseudomonas palustris TIE-1 30S ribosomal protein S15 YP_001989473.1 471234 R 395960 CDS YP_001989474.1 192288869 6408086 complement(471506..472606) 1 NC_011004.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 472606 truB 6408086 truB Rhodopseudomonas palustris TIE-1 tRNA pseudouridine synthase B YP_001989474.1 471506 R 395960 CDS YP_001989475.1 192288870 6408087 complement(472606..473019) 1 NC_011004.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 473019 rbfA 6408087 rbfA Rhodopseudomonas palustris TIE-1 ribosome-binding factor A YP_001989475.1 472606 R 395960 CDS YP_001989476.1 192288871 6408088 complement(473193..475844) 1 NC_011004.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 475844 infB 6408088 infB Rhodopseudomonas palustris TIE-1 translation initiation factor IF-2 YP_001989476.1 473193 R 395960 CDS YP_001989477.1 192288872 6408089 complement(475837..476616) 1 NC_011004.1 PFAM: protein of unknown function DUF448; KEGG: nwi:Nwi_0023 hypothetical protein; hypothetical protein 476616 6408089 Rpal_0441 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989477.1 475837 R 395960 CDS YP_001989478.1 192288873 6408090 complement(476678..478291) 1 NC_011004.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 478291 nusA 6408090 nusA Rhodopseudomonas palustris TIE-1 transcription elongation factor NusA YP_001989478.1 476678 R 395960 CDS YP_001989479.1 192288874 6408091 complement(478294..479073) 1 NC_011004.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 479073 6408091 Rpal_0443 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989479.1 478294 R 395960 CDS YP_001989480.1 192288875 6408092 479406..480491 1 NC_011004.1 KEGG: bja:blr0787 hypothetical protein; hypothetical protein 480491 6408092 Rpal_0444 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989480.1 479406 D 395960 CDS YP_001989481.1 192288876 6408093 480615..481463 1 NC_011004.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: pla:Plav_0212 phytanoyl-CoA dioxygenase; Phytanoyl-CoA dioxygenase 481463 6408093 Rpal_0445 Rhodopseudomonas palustris TIE-1 Phytanoyl-CoA dioxygenase YP_001989481.1 480615 D 395960 CDS YP_001989482.1 192288877 6408094 complement(481476..482273) 1 NC_011004.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 482273 trmB 6408094 trmB Rhodopseudomonas palustris TIE-1 tRNA (guanine-N(7)-)-methyltransferase YP_001989482.1 481476 R 395960 CDS YP_001989483.1 192288878 6408095 complement(482348..482767) 1 NC_011004.1 PFAM: helix-turn-helix domain protein; KEGG: nha:Nham_0026 transcriptional regulator, XRE family; XRE family transcriptional regulator 482767 6408095 Rpal_0447 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001989483.1 482348 R 395960 CDS YP_001989484.1 192288879 6408096 complement(482968..484578) 1 NC_011004.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 484578 lnt 6408096 lnt Rhodopseudomonas palustris TIE-1 apolipoprotein N-acyltransferase YP_001989484.1 482968 R 395960 CDS YP_001989485.1 192288880 6408097 complement(484575..485720) 1 NC_011004.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: bja:bll0792 magnesium and cobalt efflux protein; hypothetical protein 485720 6408097 Rpal_0449 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989485.1 484575 R 395960 CDS YP_001989486.1 192288881 6408098 complement(485722..486225) 1 NC_011004.1 PFAM: protein of unknown function UPF0054; KEGG: nha:Nham_0023 protein of unknown function UPF0054; hypothetical protein 486225 6408098 Rpal_0450 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989486.1 485722 R 395960 CDS YP_001989487.1 192288882 6408099 complement(486294..487349) 1 NC_011004.1 PFAM: PhoH family protein; KH type 1 domain protein; KEGG: bbt:BBta_0047 phosphate starvation-inducible protein, PhoH-like protein; PhoH family protein 487349 6408099 Rpal_0451 Rhodopseudomonas palustris TIE-1 PhoH family protein YP_001989487.1 486294 R 395960 CDS YP_001989488.1 192288883 6408100 complement(487356..488747) 1 NC_011004.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 488747 6408100 Rpal_0452 Rhodopseudomonas palustris TIE-1 (dimethylallyl)adenosine tRNA methylthiotransferase YP_001989488.1 487356 R 395960 CDS YP_001989489.1 192288884 6408101 complement(488867..489526) 1 NC_011004.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:bll0796 hypothetical protein; HAD family hydrolase 489526 6408101 Rpal_0453 Rhodopseudomonas palustris TIE-1 HAD family hydrolase YP_001989489.1 488867 R 395960 CDS YP_001989490.1 192288885 6408102 complement(489614..490045) 1 NC_011004.1 PFAM: ferric-uptake regulator; KEGG: nha:Nham_0020 ferric uptake regulator, FUR family; Fur family ferric uptake regulator 490045 6408102 Rpal_0454 Rhodopseudomonas palustris TIE-1 Fur family ferric uptake regulator YP_001989490.1 489614 R 395960 CDS YP_001989491.1 192288886 6408103 complement(490108..490593) 1 NC_011004.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: bja:bll0798 acetyltransferase; ribosomal-protein-alanine acetyltransferase 490593 6408103 Rpal_0455 Rhodopseudomonas palustris TIE-1 ribosomal-protein-alanine acetyltransferase YP_001989491.1 490108 R 395960 CDS YP_001989492.1 192288887 6408104 complement(490616..491311) 1 NC_011004.1 PFAM: peptidase M22 glycoprotease; KEGG: nha:Nham_0018 peptidase M22, glycoprotease; peptidase M22 glycoprotease 491311 6408104 Rpal_0456 Rhodopseudomonas palustris TIE-1 peptidase M22 glycoprotease YP_001989492.1 490616 R 395960 CDS YP_001989493.1 192288888 6408105 complement(491447..492013) 1 NC_011004.1 PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU; KEGG: bbt:BBta_0040 NifU protein; Scaffold protein Nfu/NifU 492013 6408105 Rpal_0457 Rhodopseudomonas palustris TIE-1 Scaffold protein Nfu/NifU YP_001989493.1 491447 R 395960 CDS YP_001989494.1 192288889 6408106 complement(492159..492653) 1 NC_011004.1 KEGG: nha:Nham_0015 UspA; UspA protein 492653 6408106 Rpal_0458 Rhodopseudomonas palustris TIE-1 UspA protein YP_001989494.1 492159 R 395960 CDS YP_001989495.1 192288890 6408107 complement(492898..493950) 1 NC_011004.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 493950 6408107 Rpal_0459 Rhodopseudomonas palustris TIE-1 tryptophanyl-tRNA synthetase YP_001989495.1 492898 R 395960 CDS YP_001989496.1 192288891 6408108 complement(494006..495562) 1 NC_011004.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: bja:bll0803 virulence factor; integral membrane protein MviN 495562 6408108 Rpal_0460 Rhodopseudomonas palustris TIE-1 integral membrane protein MviN YP_001989496.1 494006 R 395960 CDS YP_001989497.1 192288892 6408109 495903..496904 1 NC_011004.1 PFAM: PfkB domain protein; KEGG: nwi:Nwi_0218 PfkB; PfkB domain-containing protein 496904 6408109 Rpal_0461 Rhodopseudomonas palustris TIE-1 PfkB domain-containing protein YP_001989497.1 495903 D 395960 CDS YP_001989498.1 192288893 6408110 complement(497127..498821) 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: azo:azo3066 acyl-CoA synthetase; AMP-binding domain-containing protein 498821 6408110 Rpal_0462 Rhodopseudomonas palustris TIE-1 AMP-binding domain-containing protein YP_001989498.1 497127 R 395960 CDS YP_001989499.1 192288894 6408111 complement(498951..500138) 1 NC_011004.1 PFAM: beta-lactamase; KEGG: bja:bll0805 hypothetical protein; beta-lactamase 500138 6408111 Rpal_0463 Rhodopseudomonas palustris TIE-1 beta-lactamase YP_001989499.1 498951 R 395960 CDS YP_001989500.1 192288895 6408112 500379..500705 1 NC_011004.1 KEGG: bja:blr0806 hypothetical protein; hypothetical protein 500705 6408112 Rpal_0464 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989500.1 500379 D 395960 CDS YP_001989501.1 192288896 6408113 500867..502360 1 NC_011004.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bra:BRADO0028 succinate-semialdehyde dehydrogenase [NADP+] (SSDH); succinate-semialdehyde dehydrogenase 502360 6408113 Rpal_0465 Rhodopseudomonas palustris TIE-1 succinate-semialdehyde dehydrogenase YP_001989501.1 500867 D 395960 CDS YP_001989502.1 192288897 6408114 complement(502415..503851) 1 NC_011004.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: rle:RL1126 hypothetical protein; hypothetical protein 503851 6408114 Rpal_0466 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989502.1 502415 R 395960 CDS YP_001989503.1 192288898 6408115 complement(503991..504674) 1 NC_011004.1 KEGG: bja:bll0087 hypothetical protein; hypothetical protein 504674 6408115 Rpal_0467 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989503.1 503991 R 395960 CDS YP_001989504.1 192288899 6408116 complement(504677..505663) 1 NC_011004.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: nha:Nham_0428 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 505663 6408116 Rpal_0468 Rhodopseudomonas palustris TIE-1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001989504.1 504677 R 395960 CDS YP_001989505.1 192288900 6408117 complement(505663..506487) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: nha:Nham_0427 ABC transporter inner membrane protein; ABC transporter inner membrane protein 506487 6408117 Rpal_0469 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001989505.1 505663 R 395960 CDS YP_001989506.1 192288901 6408118 complement(506484..507314) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_7481 ABC transporter ATP-binding protein; ABC transporter 507314 6408118 Rpal_0470 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001989506.1 506484 R 395960 CDS YP_001989507.1 192288902 6408119 complement(507323..508465) 1 NC_011004.1 PFAM: NMT1/THI5 like domain protein; KEGG: nha:Nham_0425 perplasmic binding protein of ABC transporter; NMT1/THI5 like domain-containing protein 508465 6408119 Rpal_0471 Rhodopseudomonas palustris TIE-1 NMT1/THI5 like domain-containing protein YP_001989507.1 507323 R 395960 CDS YP_001989508.1 192288903 6408120 508595..509407 1 NC_011004.1 PFAM: Creatininase; KEGG: nha:Nham_0424 creatininase; creatininase 509407 6408120 Rpal_0472 Rhodopseudomonas palustris TIE-1 creatininase YP_001989508.1 508595 D 395960 CDS YP_001989509.1 192288904 6408121 509782..511851 1 NC_011004.1 PFAM: carbohydrate-selective porin OprB; KEGG: bja:blr0095 hypothetical protein; carbohydrate-selective porin OprB 511851 6408121 Rpal_0473 Rhodopseudomonas palustris TIE-1 carbohydrate-selective porin OprB YP_001989509.1 509782 D 395960 CDS YP_001989510.1 192288905 6408122 complement(511882..513513) 1 NC_011004.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: nha:Nham_0422 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 513513 6408122 Rpal_0474 Rhodopseudomonas palustris TIE-1 ferredoxin-dependent glutamate synthase YP_001989510.1 511882 R 395960 CDS YP_001989511.1 192288906 6408123 513809..514759 1 NC_011004.1 KEGG: bja:blr0101 hypothetical protein; hypothetical protein 514759 6408123 Rpal_0475 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989511.1 513809 D 395960 CDS YP_001989512.1 192288907 6408126 516207..517538 1 NC_011004.1 KEGG: bbt:BBta_7591 hypothetical protein; hypothetical protein 517538 6408126 Rpal_0477 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989512.1 516207 D 395960 CDS YP_001989513.1 192288908 6408127 517672..518232 1 NC_011004.1 PFAM: protein of unknown function DUF937; KEGG: nha:Nham_0511 protein of unknown function DUF937; hypothetical protein 518232 6408127 Rpal_0478 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989513.1 517672 D 395960 CDS YP_001989514.1 192288909 6408128 518290..518586 1 NC_011004.1 KEGG: nha:Nham_0510 transglycosylase-associated protein; transglycosylase-associated protein 518586 6408128 Rpal_0479 Rhodopseudomonas palustris TIE-1 transglycosylase-associated protein YP_001989514.1 518290 D 395960 CDS YP_001989515.1 192288910 6408129 complement(518640..519422) 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: bja:bll0137 hypothetical oxidoreductase; short-chain dehydrogenase/reductase SDR 519422 6408129 Rpal_0480 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001989515.1 518640 R 395960 CDS YP_001989516.1 192288911 6408130 519683..520747 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:blr0138 hypothetical protein; acyl-CoA dehydrogenase domain-containing protein 520747 6408130 Rpal_0481 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001989516.1 519683 D 395960 CDS YP_001989517.1 192288912 6408131 520774..521934 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:blr0139 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 521934 6408131 Rpal_0482 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001989517.1 520774 D 395960 CDS YP_001989518.1 192288913 6408132 521968..522774 1 NC_011004.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr0140 enoyl-CoA hydratase; Enoyl-CoA hydratase/isomerase 522774 6408132 Rpal_0483 Rhodopseudomonas palustris TIE-1 Enoyl-CoA hydratase/isomerase YP_001989518.1 521968 D 395960 CDS YP_001989519.1 192288914 6408133 complement(522919..523683) 1 NC_011004.1 KEGG: bja:bll0142 hypothetical protein; hypothetical protein 523683 6408133 Rpal_0484 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989519.1 522919 R 395960 CDS YP_001989520.1 192288915 6408134 complement(523686..524471) 1 NC_011004.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 524471 6408134 Rpal_0485 Rhodopseudomonas palustris TIE-1 enoyl-CoA hydratase YP_001989520.1 523686 R 395960 CDS YP_001989521.1 192288916 6408135 complement(524648..525853) 1 NC_011004.1 KEGG: bja:bll0144 substrate-binding protein; substrate-binding protein 525853 6408135 Rpal_0486 Rhodopseudomonas palustris TIE-1 substrate-binding protein YP_001989521.1 524648 R 395960 CDS YP_001989522.1 192288917 6408136 526207..526995 1 NC_011004.1 PFAM: nuclease (SNase domain protein); KEGG: nha:Nham_0509 nuclease (SNase-like); nuclease 526995 6408136 Rpal_0487 Rhodopseudomonas palustris TIE-1 nuclease YP_001989522.1 526207 D 395960 CDS YP_001989523.1 192288918 6408137 527007..528524 1 NC_011004.1 PFAM: peptidase M48 Ste24p; KEGG: nha:Nham_0508 peptidase M48, Ste24p; peptidase M48 Ste24p 528524 6408137 Rpal_0488 Rhodopseudomonas palustris TIE-1 peptidase M48 Ste24p YP_001989523.1 527007 D 395960 CDS YP_001989524.1 192288919 6408138 complement(528629..529465) 1 NC_011004.1 PFAM: transcription factor CarD; KEGG: bja:bll0156 probable transcriptional regulator; CarD family transcriptional regulator 529465 6408138 Rpal_0489 Rhodopseudomonas palustris TIE-1 CarD family transcriptional regulator YP_001989524.1 528629 R 395960 CDS YP_001989525.1 192288920 6408139 complement(529988..530326) 1 NC_011004.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bja:bll0157 ferredoxin; 4Fe-4S ferredoxin 530326 6408139 Rpal_0490 Rhodopseudomonas palustris TIE-1 4Fe-4S ferredoxin YP_001989525.1 529988 R 395960 CDS YP_001989526.1 192288921 6408140 complement(530401..530670) 1 NC_011004.1 PFAM: RNA-binding S4 domain protein; KEGG: nha:Nham_0505 RNA-binding S4; RNA-binding S4 domain-containing protein 530670 6408140 Rpal_0491 Rhodopseudomonas palustris TIE-1 RNA-binding S4 domain-containing protein YP_001989526.1 530401 R 395960 CDS YP_001989527.1 192288922 6408141 complement(530701..533982) 1 NC_011004.1 PFAM: helicase domain protein; KEGG: nha:Nham_0504 helicase-like; helicase domain-containing protein 533982 6408141 Rpal_0492 Rhodopseudomonas palustris TIE-1 helicase domain-containing protein YP_001989527.1 530701 R 395960 CDS YP_001989528.1 192288923 6408142 complement(534292..535164) 1 NC_011004.1 KEGG: nha:Nham_0503 hypothetical protein; hypothetical protein 535164 6408142 Rpal_0493 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989528.1 534292 R 395960 CDS YP_001989529.1 192288924 6408143 535465..535770 1 NC_011004.1 required for 70S ribosome assembly; 50S ribosomal protein L28 535770 rpmB 6408143 rpmB Rhodopseudomonas palustris TIE-1 50S ribosomal protein L28 YP_001989529.1 535465 D 395960 CDS YP_001989530.1 192288925 6408144 536095..539325 1 NC_011004.1 KEGG: bbt:BBta_0531 sensor histidine kinase with HAMP, PAS and response regulator receiver domains; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 539325 6408144 Rpal_0495 Rhodopseudomonas palustris TIE-1 multi-sensor hybrid histidine kinase YP_001989530.1 536095 D 395960 CDS YP_001989531.1 192288926 6408145 complement(539349..540497) 1 NC_011004.1 KEGG: nha:Nham_0500 hypothetical protein; hypothetical protein 540497 6408145 Rpal_0496 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989531.1 539349 R 395960 CDS YP_001989532.1 192288927 6408146 complement(540522..542426) 1 NC_011004.1 KEGG: bbt:BBta_7564 aerobic cobaltochelatase CobT subunit (cobalamin biosynthesis); TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit; SMART: von Willebrand factor type A; cobalt chelatase large subunit 542426 6408146 Rpal_0497 Rhodopseudomonas palustris TIE-1 cobalt chelatase large subunit YP_001989532.1 540522 R 395960 CDS YP_001989533.1 192288928 6408147 complement(542423..542833) 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bja:bll0179 acetyltransferase; N-acetyltransferase GCN5 542833 6408147 Rpal_0498 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001989533.1 542423 R 395960 CDS YP_001989534.1 192288929 6408148 complement(542838..543833) 1 NC_011004.1 KEGG: bja:bll0180 cobalt insertion protein; TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase AAA; cobalt chelatase small subunit 543833 6408148 Rpal_0499 Rhodopseudomonas palustris TIE-1 cobalt chelatase small subunit YP_001989534.1 542838 R 395960 CDS YP_001989535.1 192288930 6408149 544113..544730 1 NC_011004.1 PFAM: SNARE associated Golgi protein; KEGG: bja:blr0181 hypothetical protein; hypothetical protein 544730 6408149 Rpal_0500 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989535.1 544113 D 395960 CDS YP_001989536.1 192288931 6408150 complement(544795..545439) 1 NC_011004.1 PFAM: heat shock protein DnaJ domain protein; KEGG: nha:Nham_0496 heat shock protein DnaJ-like; heat shock protein DnaJ domain-containing protein 545439 6408150 Rpal_0501 Rhodopseudomonas palustris TIE-1 heat shock protein DnaJ domain-containing protein YP_001989536.1 544795 R 395960 CDS YP_001989537.1 192288932 6408151 545560..545829 1 NC_011004.1 PFAM: BolA family protein; KEGG: bja:bsr0185 hypothetical protein; BolA family protein 545829 6408151 Rpal_0502 Rhodopseudomonas palustris TIE-1 BolA family protein YP_001989537.1 545560 D 395960 CDS YP_001989538.1 192288933 6408152 complement(545847..547208) 1 NC_011004.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: nha:Nham_0492 protein of unknown function DUF21; hypothetical protein 547208 6408152 Rpal_0503 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989538.1 545847 R 395960 CDS YP_001989539.1 192288934 6408153 complement(547256..548401) 1 NC_011004.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 548401 aroB 6408153 aroB Rhodopseudomonas palustris TIE-1 3-dehydroquinate synthase YP_001989539.1 547256 R 395960 CDS YP_001989540.1 192288935 6408154 complement(548412..549014) 1 NC_011004.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 549014 6408154 Rpal_0505 Rhodopseudomonas palustris TIE-1 shikimate kinase YP_001989540.1 548412 R 395960 CDS YP_001989541.1 192288936 6408155 549153..549299 1 NC_011004.1 KEGG: bja:bsr0189 hypothetical protein; hypothetical protein 549299 6408155 Rpal_0506 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989541.1 549153 D 395960 CDS YP_001989542.1 192288937 6408156 549316..550335 1 NC_011004.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: nha:Nham_0488 tyrosine recombinase XerD; tyrosine recombinase XerD 550335 6408156 Rpal_0507 Rhodopseudomonas palustris TIE-1 tyrosine recombinase XerD YP_001989542.1 549316 D 395960 CDS YP_001989543.1 192288938 6408157 complement(550342..550917) 1 NC_011004.1 PFAM: cytochrome B561; KEGG: bbt:BBta_5356 cytochrome b561; cytochrome B561 550917 6408157 Rpal_0508 Rhodopseudomonas palustris TIE-1 cytochrome B561 YP_001989543.1 550342 R 395960 CDS YP_001989544.1 192288939 6408158 551193..552143 1 NC_011004.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 552143 6408158 Rpal_0509 Rhodopseudomonas palustris TIE-1 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_001989544.1 551193 D 395960 CDS YP_001989545.1 192288940 6408159 552515..553951 1 NC_011004.1 PFAM: protein of unknown function DUF949; KEGG: bbt:BBta_7577 exported protein of unknown function with transcriptiona regulatory protein domain (C-term); hypothetical protein 553951 6408159 Rpal_0510 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989545.1 552515 D 395960 CDS YP_001989546.1 192288941 6408160 complement(554193..557033) 1 NC_011004.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 557033 6408160 Rpal_0511 Rhodopseudomonas palustris TIE-1 preprotein translocase subunit SecA YP_001989546.1 554193 R 395960 CDS YP_001989547.1 192288942 6408161 557376..558326 1 NC_011004.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bja:blr0205 hypothetical protein; PpiC-type peptidyl-prolyl cis-trans isomerase 558326 6408161 Rpal_0512 Rhodopseudomonas palustris TIE-1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001989547.1 557376 D 395960 CDS YP_001989548.1 192288943 6408162 complement(558419..561142) 1 NC_011004.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 561142 6408162 Rpal_0513 Rhodopseudomonas palustris TIE-1 DNA mismatch repair protein MutS YP_001989548.1 558419 R 395960 CDS YP_001989549.1 192288944 6408163 561318..562526 1 NC_011004.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 562526 6408163 Rpal_0514 Rhodopseudomonas palustris TIE-1 beta-ketoadipyl CoA thiolase YP_001989549.1 561318 D 395960 CDS YP_001989550.1 192288945 6408164 complement(562706..564268) 1 NC_011004.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_7638 drug resistance transporter EmrB-FarB-QacA family; EmrB/QacA subfamily drug resistance transporter 564268 6408164 Rpal_0515 Rhodopseudomonas palustris TIE-1 EmrB/QacA subfamily drug resistance transporter YP_001989550.1 562706 R 395960 CDS YP_001989551.1 192288946 6408165 complement(564272..565441) 1 NC_011004.1 PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO0542 efflux pump protein (HlyD domain), EmrA-FarA family; secretion protein HlyD family protein 565441 6408165 Rpal_0516 Rhodopseudomonas palustris TIE-1 secretion protein HlyD family protein YP_001989551.1 564272 R 395960 CDS YP_001989552.1 192288947 6408166 complement(565434..565919) 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: bja:bll0933 transcriptional regulatory protein; MarR family transcriptional regulator 565919 6408166 Rpal_0517 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001989552.1 565434 R 395960 CDS YP_001989553.1 192288948 6408167 566109..566606 1 NC_011004.1 PFAM: ferric-uptake regulator; KEGG: nha:Nham_0618 ferric uptake regulator, FUR family; Fur family ferric uptake regulator 566606 6408167 Rpal_0518 Rhodopseudomonas palustris TIE-1 Fur family ferric uptake regulator YP_001989553.1 566109 D 395960 CDS YP_001989554.1 192288949 6408168 566771..567694 1 NC_011004.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr0935 hypothetical protein; hypothetical protein 567694 6408168 Rpal_0519 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989554.1 566771 D 395960 CDS YP_001989555.1 192288950 6408169 567708..569003 1 NC_011004.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 569003 ispG 6408169 ispG Rhodopseudomonas palustris TIE-1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_001989555.1 567708 D 395960 CDS YP_001989556.1 192288951 6408170 complement(569246..570898) 1 NC_011004.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: bja:bll0940 Na(+)/H(+) exchanger; Na+/H+ antiporter 570898 6408170 Rpal_0521 Rhodopseudomonas palustris TIE-1 Na+/H+ antiporter YP_001989556.1 569246 R 395960 CDS YP_001989557.1 192288952 6408171 571208..572791 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: mrd:Mrad2831_4412 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 572791 6408171 Rpal_0522 Rhodopseudomonas palustris TIE-1 diguanylate cyclase/phosphodiesterase YP_001989557.1 571208 D 395960 CDS YP_001989558.1 192288953 6408172 572809..573252 1 NC_011004.1 PFAM: BLUF domain protein; KEGG: mex:Mext_4031 BLUF domain protein; BLUF domain-containing protein 573252 6408172 Rpal_0523 Rhodopseudomonas palustris TIE-1 BLUF domain-containing protein YP_001989558.1 572809 D 395960 CDS YP_001989559.1 192288954 6408173 complement(573263..573949) 1 NC_011004.1 PFAM: protein of unknown function DUF1345; KEGG: nha:Nham_0622 protein of unknown function DUF1345; hypothetical protein 573949 6408173 Rpal_0524 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989559.1 573263 R 395960 CDS YP_001989560.1 192288955 6408174 complement(573957..574883) 1 NC_011004.1 PFAM: polyprenyl synthetase; KEGG: nha:Nham_0623 polyprenyl synthetase; polyprenyl synthetase 574883 6408174 Rpal_0525 Rhodopseudomonas palustris TIE-1 polyprenyl synthetase YP_001989560.1 573957 R 395960 CDS YP_001989561.1 192288956 6408175 574985..575695 1 NC_011004.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 575695 mtgA 6408175 mtgA Rhodopseudomonas palustris TIE-1 monofunctional biosynthetic peptidoglycan transglycosylase YP_001989561.1 574985 D 395960 CDS YP_001989562.1 192288957 6408176 575857..576039 1 NC_011004.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 576039 rpmF 6408176 rpmF Rhodopseudomonas palustris TIE-1 50S ribosomal protein L32 YP_001989562.1 575857 D 395960 CDS YP_001989563.1 192288958 6408177 576282..576905 1 NC_011004.1 KEGG: bra:BRADO0558 hypothetical protein; hypothetical protein 576905 6408177 Rpal_0528 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989563.1 576282 D 395960 CDS YP_001989564.1 192288959 6408178 complement(576922..577236) 1 NC_011004.1 hypothetical protein 577236 6408178 Rpal_0529 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989564.1 576922 R 395960 CDS YP_001989565.1 192288960 6408179 577475..579217 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bja:blr0951 hypothetical protein; diguanylate cyclase/phosphodiesterase 579217 6408179 Rpal_0530 Rhodopseudomonas palustris TIE-1 diguanylate cyclase/phosphodiesterase YP_001989565.1 577475 D 395960 CDS YP_001989566.1 192288961 6408180 complement(579348..579938) 1 NC_011004.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: bbt:BBta_7615 polyhydroxyalkanoate synthesis repressor PhaR-like protein; polyhydroxyalkonate synthesis repressor PhaR 579938 6408180 Rpal_0531 Rhodopseudomonas palustris TIE-1 polyhydroxyalkonate synthesis repressor PhaR YP_001989566.1 579348 R 395960 CDS YP_001989567.1 192288962 6408181 580220..581398 1 NC_011004.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 581398 6408181 Rpal_0532 Rhodopseudomonas palustris TIE-1 acetyl-CoA acetyltransferase YP_001989567.1 580220 D 395960 CDS YP_001989568.1 192288963 6408182 581581..582306 1 NC_011004.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nha:Nham_3689 acetoacetyl-CoA reductase; acetoacetyl-CoA reductase 582306 6408182 Rpal_0533 Rhodopseudomonas palustris TIE-1 acetoacetyl-CoA reductase YP_001989568.1 581581 D 395960 CDS YP_001989569.1 192288964 6408183 582383..583249 1 NC_011004.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bra:BRADO0564 conserved hypothetical protein; transmembrane protein; hypothetical protein 583249 6408183 Rpal_0534 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989569.1 582383 D 395960 CDS YP_001989570.1 192288965 6408184 complement(583269..583790) 1 NC_011004.1 KEGG: bra:BRADO0756 conserved hypothetical protein; signal peptide; protease; hypothetical protein 583790 6408184 Rpal_0535 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989570.1 583269 R 395960 CDS YP_001989571.1 192288966 6408185 complement(583921..586398) 1 NC_011004.1 KEGG: bbt:BBta_7352 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB 586398 6408185 Rpal_0536 Rhodopseudomonas palustris TIE-1 ATP-dependent helicase HrpB YP_001989571.1 583921 R 395960 CDS YP_001989572.1 192288967 6408186 586572..587624 1 NC_011004.1 PFAM: acyltransferase 3; KEGG: nwi:Nwi_0358 acyltransferase 3; acyltransferase 3 587624 6408186 Rpal_0537 Rhodopseudomonas palustris TIE-1 acyltransferase 3 YP_001989572.1 586572 D 395960 CDS YP_001989573.1 192288968 6408187 complement(587743..589302) 1 NC_011004.1 KEGG: azo:azo3307 probable coenzyme A transferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase 589302 6408187 Rpal_0538 Rhodopseudomonas palustris TIE-1 succinate CoA transferase YP_001989573.1 587743 R 395960 CDS YP_001989574.1 192288969 6408188 complement(590049..591503) 1 NC_011004.1 PFAM: porin; KEGG: bbt:BBta_3063 exported protein of unknown function with porin precursor domain; porin 591503 6408188 Rpal_0539 Rhodopseudomonas palustris TIE-1 porin YP_001989574.1 590049 R 395960 CDS YP_001989575.1 192288970 6408189 592093..592605 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: bja:blr4984 transcriptional regulatory protein; MarR family transcriptional regulator 592605 6408189 Rpal_0540 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001989575.1 592093 D 395960 CDS YP_001989576.1 192288971 6408190 complement(592600..593718) 1 NC_011004.1 KEGG: bja:bll4985 hypothetical protein; hypothetical protein 593718 6408190 Rpal_0541 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989576.1 592600 R 395960 CDS YP_001989577.1 192288972 6408192 594191..594739 1 NC_011004.1 KEGG: nha:Nham_3497 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 594739 6408192 Rpal_0542 Rhodopseudomonas palustris TIE-1 disulfide bond formation protein DsbB YP_001989577.1 594191 D 395960 CDS YP_001989578.1 192288973 6408193 complement(594742..595794) 1 NC_011004.1 TIGRFAM: membrane protein AbrB duplication; PFAM: ammonia monooxygenase; KEGG: bja:bll1341 hypothetical protein; membrane protein 595794 6408193 Rpal_0543 Rhodopseudomonas palustris TIE-1 membrane protein YP_001989578.1 594742 R 395960 CDS YP_001989579.1 192288974 6408194 595989..596516 1 NC_011004.1 KEGG: bra:BRADO6543 conserved hypothetical protein; signal peptide; hypothetical protein 596516 6408194 Rpal_0544 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989579.1 595989 D 395960 CDS YP_001989580.1 192288975 6408195 596670..597053 1 NC_011004.1 PFAM: LrgA family protein; KEGG: bja:blr1347 hypothetical protein; LrgA family protein 597053 6408195 Rpal_0545 Rhodopseudomonas palustris TIE-1 LrgA family protein YP_001989580.1 596670 D 395960 CDS YP_001989581.1 192288976 6408196 597050..597772 1 NC_011004.1 PFAM: LrgB family protein; KEGG: bja:blr1348 hypothetical protein; LrgB family protein 597772 6408196 Rpal_0546 Rhodopseudomonas palustris TIE-1 LrgB family protein YP_001989581.1 597050 D 395960 CDS YP_001989582.1 192288977 6408197 597867..598331 1 NC_011004.1 KEGG: mrd:Mrad2831_1254 hypothetical protein; hypothetical protein 598331 6408197 Rpal_0547 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989582.1 597867 D 395960 CDS YP_001989583.1 192288978 6408198 complement(598335..599411) 1 NC_011004.1 PFAM: phospholipase/carboxylesterase; KEGG: bra:BRADO6537 hypothetical protein; phospholipase/carboxylesterase 599411 6408198 Rpal_0548 Rhodopseudomonas palustris TIE-1 phospholipase/carboxylesterase YP_001989583.1 598335 R 395960 CDS YP_001989584.1 192288979 6408199 599594..600748 1 NC_011004.1 PFAM: protein of unknown function UPF0118; KEGG: bbt:BBta_2998 membrane protein of unknown function; hypothetical protein 600748 6408199 Rpal_0549 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989584.1 599594 D 395960 CDS YP_001989585.1 192288980 6408200 complement(600745..601407) 1 NC_011004.1 TIGRFAM: anti-sigma factor, , ChrR family; KEGG: rle:pRL120581 transcriptional regulator; anti-ECFsigma factor ChrR 601407 6408200 Rpal_0550 Rhodopseudomonas palustris TIE-1 anti-ECFsigma factor ChrR YP_001989585.1 600745 R 395960 CDS YP_001989586.1 192288981 6408201 complement(601404..601991) 1 NC_011004.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 601991 6408201 Rpal_0551 Rhodopseudomonas palustris TIE-1 RNA polymerase sigma factor RpoE YP_001989586.1 601404 R 395960 CDS YP_001989587.1 192288982 6408202 602382..602483 1 NC_011004.1 hypothetical protein 602483 6408202 Rpal_0552 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989587.1 602382 D 395960 CDS YP_001989588.1 192288983 6408203 complement(602619..603500) 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mrd:Mrad2831_3013 transcriptional regulator, LysR family; LysR family transcriptional regulator 603500 6408203 Rpal_0553 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001989588.1 602619 R 395960 CDS YP_001989589.1 192288984 6408204 603606..604913 1 NC_011004.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 604913 6408204 Rpal_0554 Rhodopseudomonas palustris TIE-1 C4-dicarboxylate transporter DctA YP_001989589.1 603606 D 395960 CDS YP_001989590.1 192288985 6408205 604951..605790 1 NC_011004.1 TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; cupin; KEGG: mrd:Mrad2831_3011 allantoin catabolism protein; hypothetical protein 605790 6408205 Rpal_0555 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989590.1 604951 D 395960 CDS YP_001989591.1 192288986 6408206 605787..606299 1 NC_011004.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 606299 6408206 Rpal_0556 Rhodopseudomonas palustris TIE-1 ureidoglycolate hydrolase YP_001989591.1 605787 D 395960 CDS YP_001989592.1 192288987 6408207 complement(606349..606969) 1 NC_011004.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: dac:Daci_2653 methyltransferase type 11; type 11 methyltransferase 606969 6408207 Rpal_0557 Rhodopseudomonas palustris TIE-1 type 11 methyltransferase YP_001989592.1 606349 R 395960 CDS YP_001989593.1 192288988 6408208 complement(607089..607646) 1 NC_011004.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: bja:bll1367 hypothetical protein; HNH endonuclease 607646 6408208 Rpal_0558 Rhodopseudomonas palustris TIE-1 HNH endonuclease YP_001989593.1 607089 R 395960 CDS YP_001989594.1 192288989 6408209 607927..608925 1 NC_011004.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bja:bll4682 cysteine synthase; cysteine synthase A 608925 6408209 Rpal_0559 Rhodopseudomonas palustris TIE-1 cysteine synthase A YP_001989594.1 607927 D 395960 CDS YP_001989595.1 192288990 6408210 complement(608997..609914) 1 NC_011004.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 609914 6408210 Rpal_0560 Rhodopseudomonas palustris TIE-1 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001989595.1 608997 R 395960 CDS YP_001989596.1 192288991 6408211 complement(609985..610902) 1 NC_011004.1 PFAM: pirin; KEGG: bbt:BBta_0019 pirin family protein; pirin 610902 6408211 Rpal_0561 Rhodopseudomonas palustris TIE-1 pirin YP_001989596.1 609985 R 395960 CDS YP_001989597.1 192288992 6408212 complement(611033..612454) 1 NC_011004.1 PFAM: Malonyl-CoA decarboxylase; KEGG: pde:Pden_1720 malonyl-CoA decarboxylase; malonyl-CoA decarboxylase 612454 6408212 Rpal_0562 Rhodopseudomonas palustris TIE-1 malonyl-CoA decarboxylase YP_001989597.1 611033 R 395960 CDS YP_001989598.1 192288993 6408213 complement(612630..613235) 1 NC_011004.1 PFAM: PAS fold-4 domain protein; KEGG: sma:SAV698 magnesium or manganese-dependent protein phosphatase; PAS fold-4 domain-containing protein 613235 6408213 Rpal_0563 Rhodopseudomonas palustris TIE-1 PAS fold-4 domain-containing protein YP_001989598.1 612630 R 395960 CDS YP_001989599.1 192288994 6408214 complement(613311..614675) 1 NC_011004.1 PFAM: MmgE/PrpD family protein; KEGG: bja:bll0816 hypothetical protein; MmgE/PrpD family protein 614675 6408214 Rpal_0564 Rhodopseudomonas palustris TIE-1 MmgE/PrpD family protein YP_001989599.1 613311 R 395960 CDS YP_001989600.1 192288995 6408215 614846..615958 1 NC_011004.1 KEGG: nha:Nham_0005 hypothetical protein; hypothetical protein 615958 6408215 Rpal_0565 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989600.1 614846 D 395960 CDS YP_001989601.1 192288996 6408216 complement(615963..616424) 1 NC_011004.1 KEGG: mxa:MXAN_4080 hypothetical protein; hypothetical protein 616424 6408216 Rpal_0566 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989601.1 615963 R 395960 CDS YP_001989602.1 192288997 6408217 616799..617065 1 NC_011004.1 hypothetical protein 617065 6408217 Rpal_0567 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989602.1 616799 D 395960 CDS YP_001989603.1 192288998 6408218 617228..618415 1 NC_011004.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: bja:blr0899 poly(3-hydroxyalkanoate) depolymerase; esterase, PHB depolymerase family 618415 6408218 Rpal_0568 Rhodopseudomonas palustris TIE-1 esterase, PHB depolymerase family YP_001989603.1 617228 D 395960 CDS YP_001989604.1 192288999 6408219 618543..618962 1 NC_011004.1 PFAM: protein of unknown function DUF1236; KEGG: nha:Nham_0234 hypothetical protein; hypothetical protein 618962 6408219 Rpal_0569 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989604.1 618543 D 395960 CDS YP_001989605.1 192289000 6408220 complement(619039..620016) 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bja:blr7666 transcriptional regulatory protein; AraC family transcriptional regulator 620016 6408220 Rpal_0570 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001989605.1 619039 R 395960 CDS YP_001989606.1 192289001 6408221 complement(620277..620942) 1 NC_011004.1 PFAM: beta-lactamase domain protein; KEGG: bbt:BBta_7673 enzyme with metallo-hydrolase/oxidoreductase domain; beta-lactamase domain-containing protein 620942 6408221 Rpal_0571 Rhodopseudomonas palustris TIE-1 beta-lactamase domain-containing protein YP_001989606.1 620277 R 395960 CDS YP_001989607.1 192289002 6408222 complement(621032..622150) 1 NC_011004.1 PFAM: von Willebrand factor type A; KEGG: hch:HCH_00942 protein containing VWFA domain; von Willebrand factor type A 622150 6408222 Rpal_0572 Rhodopseudomonas palustris TIE-1 von Willebrand factor type A YP_001989607.1 621032 R 395960 CDS YP_001989608.1 192289003 6408223 622327..622785 1 NC_011004.1 PFAM: protein of unknown function DUF1052; KEGG: bra:BRADO0513 hypothetical protein; hypothetical protein 622785 6408223 Rpal_0573 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989608.1 622327 D 395960 CDS YP_001989609.1 192289004 6408224 complement(622923..623477) 1 NC_011004.1 PFAM: response regulator receiver; KEGG: bja:bll0904 two-component response regulator; Fis family transcriptional regulator 623477 6408224 Rpal_0574 Rhodopseudomonas palustris TIE-1 Fis family transcriptional regulator YP_001989609.1 622923 R 395960 CDS YP_001989610.1 192289005 6408225 complement(623569..624891) 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nha:Nham_0230 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 624891 6408225 Rpal_0575 Rhodopseudomonas palustris TIE-1 integral membrane sensor signal transduction histidine kinase YP_001989610.1 623569 R 395960 CDS YP_001989611.1 192289006 6408226 625002..625796 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr0906 nodulation ATP-binding protein I; ABC transporter 625796 6408226 Rpal_0576 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001989611.1 625002 D 395960 CDS YP_001989612.1 192289007 6408227 625793..626623 1 NC_011004.1 PFAM: ABC transporter; KEGG: bbt:BBta_7657 ABC transporter permease protein; ABC transporter 626623 6408227 Rpal_0577 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001989612.1 625793 D 395960 CDS YP_001989613.1 192289008 6408228 626762..628090 1 NC_011004.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: bja:blr0908 hypothetical protein; polyhydroxyalkanoate depolymerase 628090 6408228 Rpal_0578 Rhodopseudomonas palustris TIE-1 polyhydroxyalkanoate depolymerase YP_001989613.1 626762 D 395960 CDS YP_001989614.1 192289009 6408229 628431..629180 1 NC_011004.1 PFAM: protein of unknown function DUF45; KEGG: bja:blr0909 hypothetical protein; hypothetical protein 629180 6408229 Rpal_0579 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989614.1 628431 D 395960 CDS YP_001989615.1 192289010 6408230 complement(629453..631672) 1 NC_011004.1 KEGG: nha:Nham_0227 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 631672 6408230 Rpal_0580 Rhodopseudomonas palustris TIE-1 penicillin-binding protein YP_001989615.1 629453 R 395960 CDS YP_001989616.1 192289011 6408231 631855..632106 1 NC_011004.1 hypothetical protein 632106 6408231 Rpal_0581 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989616.1 631855 D 395960 CDS YP_001989617.1 192289012 6408232 complement(632202..632414) 1 NC_011004.1 hypothetical protein 632414 6408232 Rpal_0582 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989617.1 632202 R 395960 CDS YP_001989618.1 192289013 6408233 complement(632706..633926) 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO0527 branched-chain amino acid ABC transporter periplasmic binding protein; extracellular ligand-binding receptor 633926 6408233 Rpal_0583 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001989618.1 632706 R 395960 CDS YP_001989619.1 192289014 6408234 complement(634077..634439) 1 NC_011004.1 PFAM: protein of unknown function DUF1304; KEGG: bja:bll0914 hypothetical protein; hypothetical protein 634439 6408234 Rpal_0584 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989619.1 634077 R 395960 CDS YP_001989620.1 192289015 6408235 634522..634950 1 NC_011004.1 KEGG: bja:blr0911 hypothetical protein; hypothetical protein 634950 6408235 Rpal_0585 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989620.1 634522 D 395960 CDS YP_001989621.1 192289016 6408236 635045..637786 1 NC_011004.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bbt:BBta_4235 sensor histidine kinase with a CHASE3 and a response regulator receiver domain; multi-sensor hybrid histidine kinase 637786 6408236 Rpal_0586 Rhodopseudomonas palustris TIE-1 multi-sensor hybrid histidine kinase YP_001989621.1 635045 D 395960 CDS YP_001989622.1 192289017 6408237 637978..640311 1 NC_011004.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: bra:BRADO0672 transcriptional accessory protein containing S1 RNA-binding domain; RNA binding S1 domain-containing protein 640311 6408237 Rpal_0587 Rhodopseudomonas palustris TIE-1 RNA binding S1 domain-containing protein YP_001989622.1 637978 D 395960 CDS YP_001989623.1 192289018 6408238 complement(640334..641557) 1 NC_011004.1 TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: nha:Nham_1938 chromate transporter; chromate transporter 641557 6408238 Rpal_0588 Rhodopseudomonas palustris TIE-1 chromate transporter YP_001989623.1 640334 R 395960 CDS YP_001989624.1 192289019 6408239 complement(641554..642447) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hau:Haur_5203 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 642447 6408239 Rpal_0589 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001989624.1 641554 R 395960 CDS YP_001989625.1 192289020 6408240 complement(642477..643946) 1 NC_011004.1 PFAM: amino acid permease-associated region; KEGG: gvi:gll1666 probable amino acid transporter; amino acid permease-associated protein 643946 6408240 Rpal_0590 Rhodopseudomonas palustris TIE-1 amino acid permease-associated protein YP_001989625.1 642477 R 395960 CDS YP_001989626.1 192289021 6408241 complement(643987..644667) 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: rme:Rmet_3816 transcriptional regulator, TetR family; TetR family transcriptional regulator 644667 6408241 Rpal_0591 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001989626.1 643987 R 395960 CDS YP_001989627.1 192289022 6408242 644762..646429 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rfr:Rfer_0523 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 646429 6408242 Rpal_0592 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001989627.1 644762 D 395960 CDS YP_001989628.1 192289023 6408243 complement(646592..647932) 1 NC_011004.1 KEGG: mag:amb0303 periplasmic protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 647932 6408243 Rpal_0593 Rhodopseudomonas palustris TIE-1 carboxyl-terminal protease YP_001989628.1 646592 R 395960 CDS YP_001989629.1 192289024 6408244 complement(648096..650897) 1 NC_011004.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 650897 6408244 Rpal_0594 Rhodopseudomonas palustris TIE-1 PII uridylyl-transferase YP_001989629.1 648096 R 395960 CDS YP_001989630.1 192289025 6408245 651120..652361 1 NC_011004.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 652361 argJ 6408245 argJ Rhodopseudomonas palustris TIE-1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_001989630.1 651120 D 395960 CDS YP_001989631.1 192289026 6408246 652358..652855 1 NC_011004.1 KEGG: bbt:BBta_0762 exported protein of unknown function; hypothetical protein 652855 6408246 Rpal_0596 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989631.1 652358 D 395960 CDS YP_001989632.1 192289027 6408247 652863..653264 1 NC_011004.1 PFAM: NUDIX hydrolase; KEGG: bbt:BBta_7592 mutator protein MutT; NUDIX hydrolase 653264 6408247 Rpal_0597 Rhodopseudomonas palustris TIE-1 NUDIX hydrolase YP_001989632.1 652863 D 395960 CDS YP_001989633.1 192289028 6408248 complement(653392..654561) 1 NC_011004.1 PFAM: Integrase catalytic region; KEGG: sme:SMc04250 transposase protein; integrase catalytic subunit 654561 6408248 Rpal_0598 Rhodopseudomonas palustris TIE-1 integrase catalytic subunit YP_001989633.1 653392 R 395960 CDS YP_001989634.1 192289029 6408249 complement(654707..655531) 1 NC_011004.1 PFAM: methyltransferase type 11; KEGG: bja:bll0208 methyltransferase; type 11 methyltransferase 655531 6408249 Rpal_0599 Rhodopseudomonas palustris TIE-1 type 11 methyltransferase YP_001989634.1 654707 R 395960 CDS YP_001989635.1 192289030 6408250 complement(655558..655857) 1 NC_011004.1 KEGG: bbt:BBta_7253 hypothetical protein; hypothetical protein 655857 6408250 Rpal_0600 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989635.1 655558 R 395960 CDS YP_001989636.1 192289031 6408251 655963..656778 1 NC_011004.1 PFAM: phosphoribosyltransferase; KEGG: nha:Nham_0480 phosphoribosyltransferase; phosphoribosyltransferase 656778 6408251 Rpal_0601 Rhodopseudomonas palustris TIE-1 phosphoribosyltransferase YP_001989636.1 655963 D 395960 CDS YP_001989637.1 192289032 6408252 656821..657096 1 NC_011004.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: bra:BRADO0582 glutaredoxin 3; glutaredoxin 3 657096 6408252 Rpal_0602 Rhodopseudomonas palustris TIE-1 glutaredoxin 3 YP_001989637.1 656821 D 395960 CDS YP_001989638.1 192289033 6408253 657093..657968 1 NC_011004.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bbt:BBta_7596 nitrilase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 657968 6408253 Rpal_0603 Rhodopseudomonas palustris TIE-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001989638.1 657093 D 395960 CDS YP_001989639.1 192289034 6408254 657965..658459 1 NC_011004.1 PFAM: protein of unknown function DUF1178; KEGG: bja:blr0212 hypothetical protein; hypothetical protein 658459 6408254 Rpal_0604 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989639.1 657965 D 395960 CDS YP_001989640.1 192289035 6408255 658681..659118 1 NC_011004.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: nha:Nham_0476 protein of unknown function DUF6, transmembrane; hypothetical protein 659118 6408255 Rpal_0605 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989640.1 658681 D 395960 CDS YP_001989641.1 192289036 6408256 complement(659119..660018) 1 NC_011004.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: nha:Nham_0475 hypothetical protein; hypothetical protein 660018 6408256 Rpal_0606 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989641.1 659119 R 395960 CDS YP_001989642.1 192289037 6408257 complement(660146..660907) 1 NC_011004.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 660907 6408257 Rpal_0607 Rhodopseudomonas palustris TIE-1 3-demethylubiquinone-9 3-methyltransferase YP_001989642.1 660146 R 395960 CDS YP_001989643.1 192289038 6408258 661101..662354 1 NC_011004.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 662354 6408258 Rpal_0608 Rhodopseudomonas palustris TIE-1 aspartate kinase YP_001989643.1 661101 D 395960 CDS YP_001989644.1 192289039 6408259 662690..664957 1 NC_011004.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: bja:blr0217 phosphoenolpyruvate-protein phosphotransferase; protein PtsP 664957 6408259 Rpal_0609 Rhodopseudomonas palustris TIE-1 protein PtsP YP_001989644.1 662690 D 395960 CDS YP_001989645.1 192289040 6408260 665014..666099 1 NC_011004.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 666099 prfA 6408260 prfA Rhodopseudomonas palustris TIE-1 peptide chain release factor 1 YP_001989645.1 665014 D 395960 CDS YP_001989646.1 192289041 6408261 666096..666965 1 NC_011004.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; methyltransferase type 11; KEGG: nha:Nham_0469 modification methylase, HemK family; protein-(glutamine-N5) methyltransferase 666965 6408261 Rpal_0611 Rhodopseudomonas palustris TIE-1 protein-(glutamine-N5) methyltransferase YP_001989646.1 666096 D 395960 CDS YP_001989647.1 192289042 6408262 667417..668112 1 NC_011004.1 KEGG: nha:Nham_0468 hypothetical protein; hypothetical protein 668112 6408262 Rpal_0612 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989647.1 667417 D 395960 CDS YP_001989648.1 192289043 6408263 complement(668215..668994) 1 NC_011004.1 PFAM: methyltransferase type 11; KEGG: bja:bll0221 hypothetical protein; type 11 methyltransferase 668994 6408263 Rpal_0613 Rhodopseudomonas palustris TIE-1 type 11 methyltransferase YP_001989648.1 668215 R 395960 CDS YP_001989649.1 192289044 6408264 669163..669930 1 NC_011004.1 KEGG: nha:Nham_0466 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 669930 6408264 Rpal_0614 Rhodopseudomonas palustris TIE-1 hydroxyacylglutathione hydrolase YP_001989649.1 669163 D 395960 CDS YP_001989650.1 192289045 6408265 669963..670364 1 NC_011004.1 PFAM: protein of unknown function DUF985; KEGG: bja:blr0223 hypothetical protein; hypothetical protein 670364 6408265 Rpal_0615 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989650.1 669963 D 395960 CDS YP_001989651.1 192289046 6408266 complement(670485..671423) 1 NC_011004.1 PFAM: PfkB domain protein; KEGG: nha:Nham_0460 PfkB; PfkB domain-containing protein 671423 6408266 Rpal_0616 Rhodopseudomonas palustris TIE-1 PfkB domain-containing protein YP_001989651.1 670485 R 395960 CDS YP_001989652.1 192289047 6408267 complement(671420..672352) 1 NC_011004.1 PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: bja:blr8123 MutT/NUDIX family protein; NUDIX hydrolase 672352 6408267 Rpal_0617 Rhodopseudomonas palustris TIE-1 NUDIX hydrolase YP_001989652.1 671420 R 395960 CDS YP_001989653.1 192289048 6408268 complement(672357..672776) 1 NC_011004.1 PFAM: histidine triad (HIT) protein; KEGG: bja:blr8122 hypothetical protein; histidine triad (HIT) protein 672776 6408268 Rpal_0618 Rhodopseudomonas palustris TIE-1 histidine triad (HIT) protein YP_001989653.1 672357 R 395960 CDS YP_001989654.1 192289049 6408270 673248..675119 1 NC_011004.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 675119 6408270 Rpal_0619 Rhodopseudomonas palustris TIE-1 DNA polymerase III subunits gamma and tau YP_001989654.1 673248 D 395960 CDS YP_001989655.1 192289050 6408271 675141..675461 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: nha:Nham_0463 conserved hypothetical protein 103; hypothetical protein 675461 6408271 Rpal_0620 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989655.1 675141 D 395960 CDS YP_001989656.1 192289051 6408272 675559..676161 1 NC_011004.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 676161 recR 6408272 recR Rhodopseudomonas palustris TIE-1 recombination protein RecR YP_001989656.1 675559 D 395960 CDS YP_001989657.1 192289052 6408273 676181..676609 1 NC_011004.1 KEGG: bja:bll8113 hypothetical protein; hypothetical protein 676609 6408273 Rpal_0622 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989657.1 676181 D 395960 CDS YP_001989658.1 192289053 6408274 complement(676650..678029) 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr8112 hypothetical protein; major facilitator superfamily protein 678029 6408274 Rpal_0623 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001989658.1 676650 R 395960 CDS YP_001989659.1 192289054 6408275 complement(678097..679299) 1 NC_011004.1 PFAM: protein of unknown function DUF195; KEGG: bbt:BBta_7338 hypothetical protein; hypothetical protein 679299 6408275 Rpal_0624 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989659.1 678097 R 395960 CDS YP_001989660.1 192289055 6408276 679449..679976 1 NC_011004.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 679976 def 6408276 def Rhodopseudomonas palustris TIE-1 peptide deformylase YP_001989660.1 679449 D 395960 CDS YP_001989661.1 192289056 6408277 680055..680987 1 NC_011004.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 680987 fmt 6408277 fmt Rhodopseudomonas palustris TIE-1 methionyl-tRNA formyltransferase YP_001989661.1 680055 D 395960 CDS YP_001989662.1 192289057 6408278 681174..681911 1 NC_011004.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 681911 truA 6408278 truA Rhodopseudomonas palustris TIE-1 tRNA pseudouridine synthase A YP_001989662.1 681174 D 395960 CDS YP_001989663.1 192289058 6408279 complement(682049..683212) 1 NC_011004.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 683212 6408279 Rpal_0628 Rhodopseudomonas palustris TIE-1 succinyl-diaminopimelate desuccinylase YP_001989663.1 682049 R 395960 CDS YP_001989664.1 192289059 6408280 complement(683212..683685) 1 NC_011004.1 PFAM: protein of unknown function DUF805; KEGG: bja:blr8105 hypothetical protein; hypothetical protein 683685 6408280 Rpal_0629 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989664.1 683212 R 395960 CDS YP_001989665.1 192289060 6408281 complement(683704..684549) 1 NC_011004.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 684549 dapD 6408281 dapD Rhodopseudomonas palustris TIE-1 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_001989665.1 683704 R 395960 CDS YP_001989666.1 192289061 6408282 complement(684734..685435) 1 NC_011004.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nha:Nham_3699 pyrimidine 5-nucleotidase; pyrimidine 5'-nucleotidase 685435 6408282 Rpal_0631 Rhodopseudomonas palustris TIE-1 pyrimidine 5'-nucleotidase YP_001989666.1 684734 R 395960 CDS YP_001989667.1 192289062 6408283 complement(685432..686451) 1 NC_011004.1 KEGG: bja:blr8102 hypothetical protein; hypothetical protein 686451 6408283 Rpal_0632 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989667.1 685432 R 395960 CDS YP_001989668.1 192289063 6408284 complement(686553..687449) 1 NC_011004.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 687449 6408284 Rpal_0633 Rhodopseudomonas palustris TIE-1 acetylglutamate kinase YP_001989668.1 686553 R 395960 CDS YP_001989669.1 192289064 6408285 complement(687574..687942) 1 NC_011004.1 PFAM: protein of unknown function DUF423; KEGG: bbt:BBta_7328 membrane protein of unknown function; hypothetical protein 687942 6408285 Rpal_0634 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989669.1 687574 R 395960 CDS YP_001989670.1 192289065 6408286 complement(687942..688592) 1 NC_011004.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 688592 engB 6408286 engB Rhodopseudomonas palustris TIE-1 ribosome biogenesis GTP-binding protein YsxC YP_001989670.1 687942 R 395960 CDS YP_001989671.1 192289066 6408287 complement(688744..690612) 1 NC_011004.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 690612 6408287 Rpal_0636 Rhodopseudomonas palustris TIE-1 inner membrane protein translocase component YidC YP_001989671.1 688744 R 395960 CDS YP_001989672.1 192289067 6408288 complement(690629..690970) 1 NC_011004.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: nha:Nham_3704 ribonuclease P protein component; ribonuclease P protein component 690970 6408288 Rpal_0637 Rhodopseudomonas palustris TIE-1 ribonuclease P protein component YP_001989672.1 690629 R 395960 CDS YP_001989673.1 192289068 6408289 complement(690994..691128) 1 NC_011004.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 691128 rpmH 6408289 rpmH Rhodopseudomonas palustris TIE-1 50S ribosomal protein L34 YP_001989673.1 690994 R 395960 CDS YP_001989674.1 192289069 6408290 691459..692937 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nha:Nham_3706 histidine kinase; integral membrane sensor signal transduction histidine kinase 692937 6408290 Rpal_0639 Rhodopseudomonas palustris TIE-1 integral membrane sensor signal transduction histidine kinase YP_001989674.1 691459 D 395960 CDS YP_001989675.1 192289070 6408292 complement(693685..694212) 1 NC_011004.1 KEGG: tfu:Tfu_0999 hypothetical protein; hypothetical protein 694212 6408292 Rpal_0640 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989675.1 693685 R 395960 CDS YP_001989676.1 192289071 6408293 complement(694225..695016) 1 NC_011004.1 PFAM: peptidase S24 and S26 domain protein; KEGG: sbn:Sbal195_2114 phage repressor; phage repressor 695016 6408293 Rpal_0641 Rhodopseudomonas palustris TIE-1 phage repressor YP_001989676.1 694225 R 395960 CDS YP_001989677.1 192289072 6408294 695097..695396 1 NC_011004.1 KEGG: azc:AZC_2125 transcriptional regulator; Nlp family transcriptional regulator 695396 6408294 Rpal_0642 Rhodopseudomonas palustris TIE-1 Nlp family transcriptional regulator YP_001989677.1 695097 D 395960 CDS YP_001989678.1 192289073 6408295 695393..695665 1 NC_011004.1 hypothetical protein 695665 6408295 Rpal_0643 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989678.1 695393 D 395960 CDS YP_001989679.1 192289074 6408296 695730..696545 1 NC_011004.1 SMART: ParB domain protein nuclease; KEGG: xau:Xaut_4529 ParB domain protein nuclease; ParB domain-containing protein nuclease 696545 6408296 Rpal_0644 Rhodopseudomonas palustris TIE-1 ParB domain-containing protein nuclease YP_001989679.1 695730 D 395960 CDS YP_001989680.1 192289075 6408297 696550..697002 1 NC_011004.1 KEGG: azc:AZC_2127 hypothetical protein; hypothetical protein 697002 6408297 Rpal_0645 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989680.1 696550 D 395960 CDS YP_001989681.1 192289076 6408298 696999..699173 1 NC_011004.1 PFAM: Integrase catalytic region; Transposase-like Mu; KEGG: azc:AZC_2128 transposase protein A; integrase catalytic subunit 699173 6408298 Rpal_0646 Rhodopseudomonas palustris TIE-1 integrase catalytic subunit YP_001989681.1 696999 D 395960 CDS YP_001989682.1 192289077 6408299 699185..699955 1 NC_011004.1 KEGG: azc:AZC_2129 transposase protein B; transposase protein B 699955 6408299 Rpal_0647 Rhodopseudomonas palustris TIE-1 transposase protein B YP_001989682.1 699185 D 395960 CDS YP_001989683.1 192289078 6408300 699957..700598 1 NC_011004.1 KEGG: azc:AZC_2130 hypothetical protein; hypothetical protein 700598 6408300 Rpal_0648 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989683.1 699957 D 395960 CDS YP_001989684.1 192289079 6408301 700598..700984 1 NC_011004.1 KEGG: azc:AZC_2131 hypothetical protein; hypothetical protein 700984 6408301 Rpal_0649 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989684.1 700598 D 395960 CDS YP_001989685.1 192289080 6408302 700981..701607 1 NC_011004.1 PFAM: Chromosomal replication initiator DnaA domain; KEGG: azc:AZC_2132 chromosomal replication initiator protein; Chromosomal replication initiator DnaA domain 701607 6408302 Rpal_0650 Rhodopseudomonas palustris TIE-1 Chromosomal replication initiator DnaA domain YP_001989685.1 700981 D 395960 CDS YP_001989686.1 192289081 6408303 701600..701845 1 NC_011004.1 hypothetical protein 701845 6408303 Rpal_0651 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989686.1 701600 D 395960 CDS YP_001989687.1 192289082 6408304 701838..702488 1 NC_011004.1 KEGG: azc:AZC_2133 hypothetical protein; hypothetical protein 702488 6408304 Rpal_0652 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989687.1 701838 D 395960 CDS YP_001989688.1 192289083 6408305 703103..703315 1 NC_011004.1 hypothetical protein 703315 6408305 Rpal_0653 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989688.1 703103 D 395960 CDS YP_001989689.1 192289084 6408306 703312..703539 1 NC_011004.1 KEGG: aav:Aave_2922 hypothetical protein; hypothetical protein 703539 6408306 Rpal_0654 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989689.1 703312 D 395960 CDS YP_001989690.1 192289085 6408307 703542..703742 1 NC_011004.1 hypothetical protein 703742 6408307 Rpal_0655 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989690.1 703542 D 395960 CDS YP_001989691.1 192289086 6408308 703739..704167 1 NC_011004.1 response regulator receiver protein 704167 6408308 Rpal_0656 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001989691.1 703739 D 395960 CDS YP_001989692.1 192289087 6408309 704164..704916 1 NC_011004.1 KEGG: mag:amb0461 hypothetical protein; hypothetical protein 704916 6408309 Rpal_0657 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989692.1 704164 D 395960 CDS YP_001989693.1 192289088 6408310 704913..705521 1 NC_011004.1 KEGG: azc:AZC_2134 Mu-like prophage protein GP16; Mu-like prophage protein GP16 705521 6408310 Rpal_0658 Rhodopseudomonas palustris TIE-1 Mu-like prophage protein GP16 YP_001989693.1 704913 D 395960 CDS YP_001989694.1 192289089 6408311 705524..705700 1 NC_011004.1 hypothetical protein 705700 6408311 Rpal_0659 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989694.1 705524 D 395960 CDS YP_001989695.1 192289090 6408312 705746..705979 1 NC_011004.1 KEGG: rsq:Rsph17025_2113 hypothetical protein; hypothetical protein 705979 6408312 Rpal_0660 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989695.1 705746 D 395960 CDS YP_001989696.1 192289091 6408313 705976..706386 1 NC_011004.1 KEGG: azc:AZC_2135 hypothetical protein; hypothetical protein 706386 6408313 Rpal_0661 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989696.1 705976 D 395960 CDS YP_001989697.1 192289092 6408314 706503..707897 1 NC_011004.1 PFAM: peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: rsq:Rsph17025_2109 N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 707897 6408314 Rpal_0662 Rhodopseudomonas palustris TIE-1 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_001989697.1 706503 D 395960 CDS YP_001989698.1 192289093 6408315 707910..708122 1 NC_011004.1 hypothetical protein 708122 6408315 Rpal_0663 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989698.1 707910 D 395960 CDS YP_001989699.1 192289094 6408316 708119..708517 1 NC_011004.1 KEGG: ade:Adeh_0433 exonuclease SbcC; exonuclease SbcC 708517 6408316 Rpal_0664 Rhodopseudomonas palustris TIE-1 exonuclease SbcC YP_001989699.1 708119 D 395960 CDS YP_001989700.1 192289095 6408317 708444..708719 1 NC_011004.1 hypothetical protein 708719 6408317 Rpal_0665 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989700.1 708444 D 395960 CDS YP_001989701.1 192289096 6408318 708716..708937 1 NC_011004.1 TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger DksA/TraR C4-type; KEGG: cvi:CV_0352 hypothetical protein; TraR/DksA family transcriptional regulator 708937 6408318 Rpal_0666 Rhodopseudomonas palustris TIE-1 TraR/DksA family transcriptional regulator YP_001989701.1 708716 D 395960 CDS YP_001989702.1 192289097 6408319 708937..709392 1 NC_011004.1 KEGG: xau:Xaut_4506 hypothetical protein; hypothetical protein 709392 6408319 Rpal_0667 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989702.1 708937 D 395960 CDS YP_001989703.1 192289098 6408320 709389..709700 1 NC_011004.1 KEGG: xau:Xaut_4505 hypothetical protein; hypothetical protein 709700 6408320 Rpal_0668 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989703.1 709389 D 395960 CDS YP_001989704.1 192289099 6408321 709705..710283 1 NC_011004.1 KEGG: xau:Xaut_4504 Mu-like prophage FluMu protein GP27; Mu-like prophage FluMu protein GP27 710283 6408321 Rpal_0669 Rhodopseudomonas palustris TIE-1 Mu-like prophage FluMu protein GP27 YP_001989704.1 709705 D 395960 CDS YP_001989705.1 192289100 6408322 710280..711605 1 NC_011004.1 PFAM: protein of unknown function DUF264; KEGG: xau:Xaut_4503 protein of unknown function DUF264; hypothetical protein 711605 6408322 Rpal_0670 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989705.1 710280 D 395960 CDS YP_001989706.1 192289101 6408323 711599..713191 1 NC_011004.1 PFAM: protein of unknown function DUF935; KEGG: azc:AZC_2143 Mu-like prophage protein GP29; hypothetical protein 713191 6408323 Rpal_0671 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989706.1 711599 D 395960 CDS YP_001989707.1 192289102 6408324 713194..714375 1 NC_011004.1 PFAM: head morphogenesis protein SPP1 gp7; KEGG: azc:AZC_2144 phage Mu protein F like protein; head morphogenesis protein SPP1 gp7 714375 6408324 Rpal_0672 Rhodopseudomonas palustris TIE-1 head morphogenesis protein SPP1 gp7 YP_001989707.1 713194 D 395960 CDS YP_001989708.1 192289103 6408325 714647..715609 1 NC_011004.1 KEGG: azc:AZC_2147 prophage MuSo2 protein; prophage MuSo2 protein 715609 6408325 Rpal_0673 Rhodopseudomonas palustris TIE-1 prophage MuSo2 protein YP_001989708.1 714647 D 395960 CDS YP_001989709.1 192289104 6408326 715609..715998 1 NC_011004.1 KEGG: pol:Bpro_3746 hypothetical protein; hypothetical protein 715998 6408326 Rpal_0674 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989709.1 715609 D 395960 CDS YP_001989710.1 192289105 6408328 716133..717095 1 NC_011004.1 KEGG: btr:Btr_2623 hypothetical protein; hypothetical protein 717095 6408328 Rpal_0675 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989710.1 716133 D 395960 CDS YP_001989711.1 192289106 6408329 717108..717407 1 NC_011004.1 KEGG: swd:Swoo_3561 translation initiation factor IF-2; translation initiation factor IF-2 717407 6408329 Rpal_0676 Rhodopseudomonas palustris TIE-1 translation initiation factor IF-2 YP_001989711.1 717108 D 395960 CDS YP_001989712.1 192289107 6408330 717511..717795 1 NC_011004.1 hypothetical protein 717795 6408330 Rpal_0677 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989712.1 717511 D 395960 CDS YP_001989713.1 192289108 6408331 717792..718019 1 NC_011004.1 hypothetical protein 718019 6408331 Rpal_0678 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989713.1 717792 D 395960 CDS YP_001989714.1 192289109 6408332 718019..718492 1 NC_011004.1 KEGG: azc:AZC_2151 hypothetical protein; hypothetical protein 718492 6408332 Rpal_0679 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989714.1 718019 D 395960 CDS YP_001989715.1 192289110 6408333 718492..718986 1 NC_011004.1 TIGRFAM: phage virion morphogenesis protein; KEGG: azc:AZC_2152 prophage MuSo2; phage virion morphogenesis protein 718986 6408333 Rpal_0680 Rhodopseudomonas palustris TIE-1 phage virion morphogenesis protein YP_001989715.1 718492 D 395960 CDS YP_001989716.1 192289111 6408334 718983..719570 1 NC_011004.1 KEGG: azc:AZC_2153 hypothetical protein; hypothetical protein 719570 6408334 Rpal_0681 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989716.1 718983 D 395960 CDS YP_001989717.1 192289112 6408335 719567..720187 1 NC_011004.1 KEGG: azc:AZC_2154 phage baseplate assembly protein V; hypothetical protein 720187 6408335 Rpal_0682 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989717.1 719567 D 395960 CDS YP_001989718.1 192289113 6408336 720193..720474 1 NC_011004.1 hypothetical protein 720474 6408336 Rpal_0683 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989718.1 720193 D 395960 CDS YP_001989719.1 192289114 6408337 720478..720894 1 NC_011004.1 KEGG: azc:AZC_2156 phage GP25 protein; hypothetical protein 720894 6408337 Rpal_0684 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989719.1 720478 D 395960 CDS YP_001989720.1 192289115 6408338 720891..721829 1 NC_011004.1 PFAM: Baseplate J family protein; KEGG: nha:Nham_3331 baseplate J-like protein; baseplate J family protein 721829 6408338 Rpal_0685 Rhodopseudomonas palustris TIE-1 baseplate J family protein YP_001989720.1 720891 D 395960 CDS YP_001989721.1 192289116 6408339 721826..723085 1 NC_011004.1 TIGRFAM: phage tail protein I; PFAM: ATP-dependent DNA ligase, conserved site; KEGG: nha:Nham_3330 phage tail protein I; phage tail protein I 723085 6408339 Rpal_0686 Rhodopseudomonas palustris TIE-1 phage tail protein I YP_001989721.1 721826 D 395960 CDS YP_001989722.1 192289117 6408340 723097..725418 1 NC_011004.1 KEGG: nha:Nham_3329 hypothetical protein; hypothetical protein 725418 6408340 Rpal_0687 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989722.1 723097 D 395960 CDS YP_001989723.1 192289118 6408341 725422..725625 1 NC_011004.1 hypothetical protein 725625 6408341 Rpal_0688 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989723.1 725422 D 395960 CDS YP_001989724.1 192289119 6408342 725647..727221 1 NC_011004.1 KEGG: btr:Btr_2267 hypothetical protein; hypothetical protein 727221 6408342 Rpal_0689 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989724.1 725647 D 395960 CDS YP_001989725.1 192289120 6408343 727280..727924 1 NC_011004.1 KEGG: nha:Nham_2379 hypothetical protein; hypothetical protein 727924 6408343 Rpal_0690 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989725.1 727280 D 395960 CDS YP_001989726.1 192289121 6408344 728021..729478 1 NC_011004.1 KEGG: oan:Oant_1491 hypothetical protein; Phage tail sheath protein FI-like protein 729478 6408344 Rpal_0691 Rhodopseudomonas palustris TIE-1 Phage tail sheath protein FI-like protein YP_001989726.1 728021 D 395960 CDS YP_001989727.1 192289122 6408345 729491..730012 1 NC_011004.1 KEGG: btr:Btr_2610 hypothetical protein; hypothetical protein 730012 6408345 Rpal_0692 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989727.1 729491 D 395960 CDS YP_001989728.1 192289123 6408346 730294..730752 1 NC_011004.1 KEGG: azc:AZC_2164 hypothetical protein; hypothetical protein 730752 6408346 Rpal_0693 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989728.1 730294 D 395960 CDS YP_001989729.1 192289124 6408347 730755..730913 1 NC_011004.1 hypothetical protein 730913 6408347 Rpal_0694 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989729.1 730755 D 395960 CDS YP_001989730.1 192289125 6408348 730910..733198 1 NC_011004.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: azc:AZC_2165 phage-related tail protein; phage tail tape measure protein, TP901 family 733198 6408348 Rpal_0695 Rhodopseudomonas palustris TIE-1 phage tail tape measure protein, TP901 family YP_001989730.1 730910 D 395960 CDS YP_001989731.1 192289126 6408349 733213..733578 1 NC_011004.1 KEGG: btr:Btr_2606 phage tail protein; phage tail protein 733578 6408349 Rpal_0696 Rhodopseudomonas palustris TIE-1 phage tail protein YP_001989731.1 733213 D 395960 CDS YP_001989732.1 192289127 6408350 733575..733811 1 NC_011004.1 PFAM: tail X family protein; KEGG: nha:Nham_3320 phage tail X; tail X family protein 733811 6408350 Rpal_0697 Rhodopseudomonas palustris TIE-1 tail X family protein YP_001989732.1 733575 D 395960 CDS YP_001989733.1 192289128 6408351 733808..734884 1 NC_011004.1 PFAM: late control D family protein; KEGG: btr:Btr_1650 hypothetical protein; late control D family protein 734884 6408351 Rpal_0698 Rhodopseudomonas palustris TIE-1 late control D family protein YP_001989733.1 733808 D 395960 CDS YP_001989734.1 192289129 6408352 734897..735313 1 NC_011004.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: nha:Nham_0534 rare lipoprotein A; rare lipoprotein A 735313 6408352 Rpal_0699 Rhodopseudomonas palustris TIE-1 rare lipoprotein A YP_001989734.1 734897 D 395960 CDS YP_001989735.1 192289130 6408353 735313..735660 1 NC_011004.1 hypothetical protein 735660 6408353 Rpal_0700 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989735.1 735313 D 395960 CDS YP_001989736.1 192289131 6408354 735980..736696 1 NC_011004.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: azc:AZC_2169 site-specific DNA-methyltransferase; DNA methylase N-4/N-6 domain-containing protein 736696 6408354 Rpal_0701 Rhodopseudomonas palustris TIE-1 DNA methylase N-4/N-6 domain-containing protein YP_001989736.1 735980 D 395960 CDS YP_001989737.1 192289132 6408355 736760..737029 1 NC_011004.1 hypothetical protein 737029 6408355 Rpal_0702 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989737.1 736760 D 395960 CDS YP_001989738.1 192289133 6408356 complement(737106..737615) 1 NC_011004.1 KEGG: bja:bll3690 hypothetical protein; hypothetical protein 737615 6408356 Rpal_0703 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989738.1 737106 R 395960 CDS YP_001989739.1 192289134 6408357 complement(737642..738970) 1 NC_011004.1 KEGG: bja:bll3691 hypothetical protein; hypothetical protein 738970 6408357 Rpal_0704 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989739.1 737642 R 395960 CDS YP_001989740.1 192289135 6408358 complement(739047..741449) 1 NC_011004.1 KEGG: bja:bll3692 hypothetical protein; hypothetical protein 741449 6408358 Rpal_0705 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989740.1 739047 R 395960 CDS YP_001989741.1 192289136 6408359 741952..742650 1 NC_011004.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 742650 6408359 Rpal_0706 Rhodopseudomonas palustris TIE-1 RNA polymerase sigma factor YP_001989741.1 741952 D 395960 CDS YP_001989742.1 192289137 6408360 742793..743617 1 NC_011004.1 PFAM: flagellin domain protein; KEGG: bja:blr3695 probable flagellin; flagellin domain-containing protein 743617 6408360 Rpal_0707 Rhodopseudomonas palustris TIE-1 flagellin domain-containing protein YP_001989742.1 742793 D 395960 CDS YP_001989743.1 192289138 6408361 743679..745394 1 NC_011004.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: bbt:BBta_3160 flagellar hook-associated protein 2 (HAP2, FliD protein); flagellar hook-associated 2 domain-containing protein 745394 6408361 Rpal_0708 Rhodopseudomonas palustris TIE-1 flagellar hook-associated 2 domain-containing protein YP_001989743.1 743679 D 395960 CDS YP_001989744.1 192289139 6408362 745394..745786 1 NC_011004.1 KEGG: bbt:BBta_3161 flagellar protein FliS; flagellar protein FliS 745786 6408362 Rpal_0709 Rhodopseudomonas palustris TIE-1 flagellar protein FliS YP_001989744.1 745394 D 395960 CDS YP_001989745.1 192289140 6408363 745882..746181 1 NC_011004.1 KEGG: bja:blr3698 hypothetical protein; hypothetical protein 746181 6408363 Rpal_0710 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989745.1 745882 D 395960 CDS YP_001989746.1 192289141 6408364 746559..747227 1 NC_011004.1 PFAM: flagellar hook capping protein; KEGG: bbt:BBta_3164 basal-body rod modification protein FlgD; flagellar hook capping protein 747227 6408364 Rpal_0711 Rhodopseudomonas palustris TIE-1 flagellar hook capping protein YP_001989746.1 746559 D 395960 CDS YP_001989747.1 192289142 6408365 747247..748512 1 NC_011004.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 748512 flgE 6408365 flgE Rhodopseudomonas palustris TIE-1 flagellar hook protein FlgE YP_001989747.1 747247 D 395960 CDS YP_001989748.1 192289143 6408366 748518..748775 1 NC_011004.1 KEGG: bra:BRADO4883 hypothetical protein; hypothetical protein 748775 6408366 Rpal_0713 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989748.1 748518 D 395960 CDS YP_001989749.1 192289144 6408367 748800..749252 1 NC_011004.1 KEGG: bbt:BBta_3167 hypothetical protein; hypothetical protein 749252 6408367 Rpal_0714 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989749.1 748800 D 395960 CDS YP_001989750.1 192289145 6408368 749274..751037 1 NC_011004.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; flagellin hook IN repeat protein; protein of unknown function DUF1078 domain protein; KEGG: bja:blr3703 probable flagellar hook-associated protein; flagellar hook-associated protein FlgK 751037 6408368 Rpal_0715 Rhodopseudomonas palustris TIE-1 flagellar hook-associated protein FlgK YP_001989750.1 749274 D 395960 CDS YP_001989751.1 192289146 6408369 751053..751964 1 NC_011004.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 751964 flgL 6408369 flgL Rhodopseudomonas palustris TIE-1 flagellar hook-associated protein FlgL YP_001989751.1 751053 D 395960 CDS YP_001989752.1 192289147 6408370 complement(751984..752760) 1 NC_011004.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pna:Pnap_2128 enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase 752760 6408370 Rpal_0717 Rhodopseudomonas palustris TIE-1 Enoyl-CoA hydratase/isomerase YP_001989752.1 751984 R 395960 CDS YP_001989753.1 192289148 6408371 complement(752788..754431) 1 NC_011004.1 AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate; cyclohexanecarboxylate-CoA ligase 754431 6408371 Rpal_0718 Rhodopseudomonas palustris TIE-1 cyclohexanecarboxylate-CoA ligase YP_001989753.1 752788 R 395960 CDS YP_001989754.1 192289149 6408372 complement(754488..755639) 1 NC_011004.1 TIGRFAM: cyclohexanecarboxyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: reu:Reut_B3917 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; cyclohexanecarboxyl-CoA dehydrogenase 755639 6408372 Rpal_0719 Rhodopseudomonas palustris TIE-1 cyclohexanecarboxyl-CoA dehydrogenase YP_001989754.1 754488 R 395960 CDS YP_001989755.1 192289150 6408373 complement(755704..756486) 1 NC_011004.1 TIGRFAM: 2-ketocyclohexanecarboxyl-CoA hydrolase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pna:Pnap_2124 naphthoate synthase; 2-ketocyclohexanecarboxyl-CoA hydrolase 756486 6408373 Rpal_0720 Rhodopseudomonas palustris TIE-1 2-ketocyclohexanecarboxyl-CoA hydrolase YP_001989755.1 755704 R 395960 CDS YP_001989756.1 192289151 6408374 complement(756515..757282) 1 NC_011004.1 TIGRFAM: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2123 short-chain dehydrogenase/reductase SDR; 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase 757282 6408374 Rpal_0721 Rhodopseudomonas palustris TIE-1 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase YP_001989756.1 756515 R 395960 CDS YP_001989757.1 192289152 6408375 757405..757932 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: reu:Reut_B3914 transcriptional regulator, MarR family; MarR family transcriptional regulator 757932 6408375 Rpal_0722 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001989757.1 757405 D 395960 CDS YP_001989758.1 192289153 6408376 758021..759025 1 NC_011004.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_2134 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase zinc-binding domain-containing protein 759025 6408376 Rpal_0723 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase zinc-binding domain-containing protein YP_001989758.1 758021 D 395960 CDS YP_001989759.1 192289154 6408377 759194..760378 1 NC_011004.1 TIGRFAM: benzoyl-CoA reductase, subunit C; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: mag:amb2141 C-subunit of benzoyl-CoA reductase; benzoyl-CoA reductase subunit C 760378 6408377 Rpal_0724 Rhodopseudomonas palustris TIE-1 benzoyl-CoA reductase subunit C YP_001989759.1 759194 D 395960 CDS YP_001989760.1 192289155 6408378 760375..761685 1 NC_011004.1 TIGRFAM: benzoyl-CoA reductase, subunit B; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: mag:amb2140 B-subunit of benzoyl-CoA reductase; benzoyl-CoA reductase subunit B 761685 6408378 Rpal_0725 Rhodopseudomonas palustris TIE-1 benzoyl-CoA reductase subunit B YP_001989760.1 760375 D 395960 CDS YP_001989761.1 192289156 6408379 761697..763010 1 NC_011004.1 TIGRFAM: CoA-substrate-specific enzyme activase; benzoyl-CoA reductase, subunit A; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: mag:amb2139 activator of 2-hydroxyglutaryl-CoA dehydratase; benzoyl-CoA reductase subunit A 763010 6408379 Rpal_0726 Rhodopseudomonas palustris TIE-1 benzoyl-CoA reductase subunit A YP_001989761.1 761697 D 395960 CDS YP_001989762.1 192289157 6408380 763104..763937 1 NC_011004.1 TIGRFAM: CoA-substrate-specific enzyme activase; benzoyl-CoA reductase, subunit D; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: mag:amb2138 D-subunit of benzoyl-CoA reductase; benzoyl-CoA reductase subunit D 763937 6408380 Rpal_0727 Rhodopseudomonas palustris TIE-1 benzoyl-CoA reductase subunit D YP_001989762.1 763104 D 395960 CDS YP_001989763.1 192289158 6408381 764053..765627 1 NC_011004.1 TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_0216 benzoate-CoA ligase family; benzoate-CoA ligase family 765627 6408381 Rpal_0728 Rhodopseudomonas palustris TIE-1 benzoate-CoA ligase family YP_001989763.1 764053 D 395960 CDS YP_001989764.1 192289159 6408382 765644..765889 1 NC_011004.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mms:mma_3134 ferredoxin; 4Fe-4S ferredoxin 765889 6408382 Rpal_0729 Rhodopseudomonas palustris TIE-1 4Fe-4S ferredoxin YP_001989764.1 765644 D 395960 CDS YP_001989765.1 192289160 6408383 complement(765938..766408) 1 NC_011004.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; hypothetical protein; KEGG: mag:amb3391 predicted transcriptional regulator; BadM/Rrf2 family transcriptional regulator 766408 6408383 Rpal_0730 Rhodopseudomonas palustris TIE-1 BadM/Rrf2 family transcriptional regulator YP_001989765.1 765938 R 395960 CDS YP_001989766.1 192289161 6408384 complement(766463..766942) 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gme:Gmet_2096 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 766942 6408384 Rpal_0731 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001989766.1 766463 R 395960 CDS YP_001989767.1 192289162 6408385 complement(767041..767763) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mag:amb2870 ABC-type branched-chain amino acid transport systems, ATPase component; branched-chain amino acid ABC transporter ATPase 767763 6408385 Rpal_0732 Rhodopseudomonas palustris TIE-1 branched-chain amino acid ABC transporter ATPase YP_001989767.1 767041 R 395960 CDS YP_001989768.1 192289163 6408386 complement(767760..769553) 1 NC_011004.1 PFAM: inner-membrane translocator; ABC transporter; SMART: ATPase AAA; KEGG: xau:Xaut_2704 ABC transporter; ABC transporter 769553 6408386 Rpal_0733 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001989768.1 767760 R 395960 CDS YP_001989769.1 192289164 6408387 complement(769550..770410) 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: pna:Pnap_1906 inner-membrane translocator; inner-membrane translocator 770410 6408387 Rpal_0734 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001989769.1 769550 R 395960 CDS YP_001989770.1 192289165 6408388 complement(770496..771674) 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: dar:Daro_2772 extracellular ligand-binding receptor; extracellular ligand-binding receptor 771674 6408388 Rpal_0735 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001989770.1 770496 R 395960 CDS YP_001989771.1 192289166 6408389 complement(771851..773470) 1 NC_011004.1 TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr1077 acetyl-CoA synthetase; benzoate-CoA ligase family 773470 6408389 Rpal_0736 Rhodopseudomonas palustris TIE-1 benzoate-CoA ligase family YP_001989771.1 771851 R 395960 CDS YP_001989772.1 192289167 6408390 773637..774128 1 NC_011004.1 TIGRFAM: 4-hydroxybenzoyl-CoA reductase, gamma subunit; PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: eba:ebA3604 4-hydroxybenzoyl-CoA reductase, gamma subunit; 4-hydroxybenzoyl-CoA reductase subunit gamma 774128 6408390 Rpal_0737 Rhodopseudomonas palustris TIE-1 4-hydroxybenzoyl-CoA reductase subunit gamma YP_001989772.1 773637 D 395960 CDS YP_001989773.1 192289168 6408391 774125..776458 1 NC_011004.1 TIGRFAM: 4-hydroxybenzoyl-CoA reductase, alpha subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: eba:ebA3603 4-hydroxybenzoyl-CoA reductase, alpha subunit; 4-hydroxybenzoyl-CoA reductase subunit alpha 776458 6408391 Rpal_0738 Rhodopseudomonas palustris TIE-1 4-hydroxybenzoyl-CoA reductase subunit alpha YP_001989773.1 774125 D 395960 CDS YP_001989774.1 192289169 6408392 776455..777438 1 NC_011004.1 TIGRFAM: 4-hydroxybenzoyl-CoA reductase, beta subunit; PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: eba:ebA3602 4-hydroxybenzoyl-CoA reductase, beta subunit; 4-hydroxybenzoyl-CoA reductase subunit beta 777438 6408392 Rpal_0739 Rhodopseudomonas palustris TIE-1 4-hydroxybenzoyl-CoA reductase subunit beta YP_001989774.1 776455 D 395960 CDS YP_001989775.1 192289170 6408393 complement(777421..778188) 1 NC_011004.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: sil:SPOA0323 cyclic nucleotide-binding protein; Crp/Fnr family transcriptional regulator 778188 6408393 Rpal_0740 Rhodopseudomonas palustris TIE-1 Crp/Fnr family transcriptional regulator YP_001989775.1 777421 R 395960 CDS YP_001989776.1 192289171 6408394 778380..779492 1 NC_011004.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_3153 alcohol dehydrogenase, zinc-binding protein; alcohol dehydrogenase GroES domain-containing protein 779492 6408394 Rpal_0741 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase GroES domain-containing protein YP_001989776.1 778380 D 395960 CDS YP_001989777.1 192289172 6408395 779528..780349 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: bbt:BBta_0748 hydrolase (alpha/beta hydrolase superfamily); alpha/beta hydrolase fold protein 780349 6408395 Rpal_0742 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001989777.1 779528 D 395960 CDS YP_001989778.1 192289173 6408396 780478..782172 1 NC_011004.1 cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA; benzoyl-CoA-dihydrodiol lyase 782172 6408396 Rpal_0743 Rhodopseudomonas palustris TIE-1 benzoyl-CoA-dihydrodiol lyase YP_001989778.1 780478 D 395960 CDS YP_001989779.1 192289174 6408397 782343..783794 1 NC_011004.1 TIGRFAM: benzoyl-CoA oxygenase, B subunit; KEGG: bja:blr1081 probable benzoyl-CoA oxygenase component; benzoyl-CoA oxygenase subunit B 783794 6408397 Rpal_0744 Rhodopseudomonas palustris TIE-1 benzoyl-CoA oxygenase subunit B YP_001989779.1 782343 D 395960 CDS YP_001989780.1 192289175 6408398 784122..787106 1 NC_011004.1 TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: ade:Adeh_2791 trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein 787106 6408398 Rpal_0745 Rhodopseudomonas palustris TIE-1 trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein YP_001989780.1 784122 D 395960 CDS YP_001989781.1 192289176 6408399 complement(787130..789163) 1 NC_011004.1 PFAM: radical SAM domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bra:BRADO0847 conserved hypothetical protein; radical SAM domain; radical SAM domain-containing protein 789163 6408399 Rpal_0746 Rhodopseudomonas palustris TIE-1 radical SAM domain-containing protein YP_001989781.1 787130 R 395960 CDS YP_001989782.1 192289177 6408400 complement(789230..789793) 1 NC_011004.1 KEGG: fre:Franean1_3028 transcriptional regulator, TetR family; TetR family transcriptional regulator 789793 6408400 Rpal_0747 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001989782.1 789230 R 395960 CDS YP_001989783.1 192289178 6408401 789992..791023 1 NC_011004.1 PFAM: secretion protein HlyD family protein; KEGG: rle:pRL90043 transmembrane transport protein; secretion protein HlyD family protein 791023 6408401 Rpal_0748 Rhodopseudomonas palustris TIE-1 secretion protein HlyD family protein YP_001989783.1 789992 D 395960 CDS YP_001989784.1 192289179 6408402 791020..793734 1 NC_011004.1 PFAM: ABC transporter; ABC transporter; SMART: ATPase AAA; KEGG: mex:Mext_0565 ABC transporter; ABC transporter 793734 6408402 Rpal_0749 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001989784.1 791020 D 395960 CDS YP_001989785.1 192289180 6408403 793737..794864 1 NC_011004.1 PFAM: ABC transporter; KEGG: sil:SPO0109 hypothetical protein; ABC transporter 794864 6408403 Rpal_0750 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001989785.1 793737 D 395960 CDS YP_001989786.1 192289181 6408404 complement(794872..795051) 1 NC_011004.1 KEGG: bbt:BBta_4009 hypothetical protein; hypothetical protein 795051 6408404 Rpal_0751 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989786.1 794872 R 395960 CDS YP_001989787.1 192289182 6408405 795194..796069 1 NC_011004.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bja:blr5288 transcriptional regulatory protein; IclR family transcriptional regulator 796069 6408405 Rpal_0752 Rhodopseudomonas palustris TIE-1 IclR family transcriptional regulator YP_001989787.1 795194 D 395960 CDS YP_001989788.1 192289183 6408407 complement(797252..797899) 1 NC_011004.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bra:BRADO5348 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 797899 6408407 Rpal_0754 Rhodopseudomonas palustris TIE-1 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001989788.1 797252 R 395960 CDS YP_001989789.1 192289184 6408408 complement(797880..798464) 1 NC_011004.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: bja:blr1228 guanylate kinase; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 798464 6408408 Rpal_0755 Rhodopseudomonas palustris TIE-1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN YP_001989789.1 797880 R 395960 CDS YP_001989790.1 192289185 6408409 complement(798461..799639) 1 NC_011004.1 TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bja:blr1227 phosphonate metabolism protein; phosphonate metabolism protein PhnM 799639 6408409 Rpal_0756 Rhodopseudomonas palustris TIE-1 phosphonate metabolism protein PhnM YP_001989790.1 798461 R 395960 CDS YP_001989791.1 192289186 6408410 complement(799636..800346) 1 NC_011004.1 KEGG: bja:blr1226 phosphonate uptake transporter ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter; SMART: ATPase AAA; phosphonate C-P lyase system protein PhnL 800346 6408410 Rpal_0757 Rhodopseudomonas palustris TIE-1 phosphonate C-P lyase system protein PhnL YP_001989791.1 799636 R 395960 CDS YP_001989792.1 192289187 6408411 complement(800346..801164) 1 NC_011004.1 KEGG: bra:BRADO5352 phosphonates transport ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter; SMART: ATPase AAA; phosphonate C-P lyase system protein PhnK 801164 phnK 6408411 phnK Rhodopseudomonas palustris TIE-1 phosphonate C-P lyase system protein PhnK YP_001989792.1 800346 R 395960 CDS YP_001989793.1 192289188 6408412 complement(801157..802035) 1 NC_011004.1 PFAM: phosphonate metabolism PhnJ; KEGG: bbt:BBta_5845 PhnJ protein, phosphonate metabolism; phosphonate metabolism PhnJ 802035 6408412 Rpal_0759 Rhodopseudomonas palustris TIE-1 phosphonate metabolism PhnJ YP_001989793.1 801157 R 395960 CDS YP_001989794.1 192289189 6408413 complement(802032..803129) 1 NC_011004.1 PFAM: phosphonate metabolism; KEGG: bja:blr1223 phosphonate metabolism protein; phosphonate metabolism protein 803129 6408413 Rpal_0760 Rhodopseudomonas palustris TIE-1 phosphonate metabolism protein YP_001989794.1 802032 R 395960 CDS YP_001989795.1 192289190 6408414 complement(803133..803735) 1 NC_011004.1 TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: bja:blr1222 carbon-phosphorus lyase complex subunit; carbon-phosphorus lyase complex subunit 803735 phnH 6408414 phnH Rhodopseudomonas palustris TIE-1 carbon-phosphorus lyase complex subunit YP_001989795.1 803133 R 395960 CDS YP_001989796.1 192289191 6408415 complement(803738..804211) 1 NC_011004.1 TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; KEGG: bja:blr1221 phosphonate metabolism protein; phosphonate C-P lyase system protein PhnG 804211 6408415 Rpal_0762 Rhodopseudomonas palustris TIE-1 phosphonate C-P lyase system protein PhnG YP_001989796.1 803738 R 395960 CDS YP_001989797.1 192289192 6408416 804323..805051 1 NC_011004.1 TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bbt:BBta_5849 transcriptional regulator, GntR family, with an UbiC transcription regulator-associated domain; GntR family transcriptional regulator 805051 6408416 Rpal_0763 Rhodopseudomonas palustris TIE-1 GntR family transcriptional regulator YP_001989797.1 804323 D 395960 CDS YP_001989798.1 192289193 6408417 complement(805073..805228) 1 NC_011004.1 hypothetical protein 805228 6408417 Rpal_0764 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989798.1 805073 R 395960 CDS YP_001989799.1 192289194 6408418 complement(805375..806241) 1 NC_011004.1 TIGRFAM: phosphonate ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO5363 PhnE protein, phosphonate ABC transporter membrane protein; phosphonate ABC transporter inner membrane subunit 806241 6408418 Rpal_0765 Rhodopseudomonas palustris TIE-1 phosphonate ABC transporter inner membrane subunit YP_001989799.1 805375 R 395960 CDS YP_001989800.1 192289195 6408419 complement(806238..807119) 1 NC_011004.1 TIGRFAM: phosphonate ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: xau:Xaut_1320 phosphonate ABC transporter inner membrane subunit; phosphonate ABC transporter inner membrane subunit 807119 6408419 Rpal_0766 Rhodopseudomonas palustris TIE-1 phosphonate ABC transporter inner membrane subunit YP_001989800.1 806238 R 395960 CDS YP_001989801.1 192289196 6408420 complement(807188..808096) 1 NC_011004.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate binding protein; KEGG: xau:Xaut_1321 phosphonate ABC transporter periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate binding protein 808096 6408420 Rpal_0767 Rhodopseudomonas palustris TIE-1 phosphonate ABC transporter periplasmic phosphonate binding protein YP_001989801.1 807188 R 395960 CDS YP_001989802.1 192289197 6408421 complement(808206..809018) 1 NC_011004.1 KEGG: bja:bll7947 phosphonates transport system nucleotide binding/ATPase protein; TIGRFAM: phosphonate ABC transporter ATPase subunit; PFAM: ABC transporter; SMART: ATPase AAA; phosphonate ABC transporter ATPase 809018 6408421 Rpal_0768 Rhodopseudomonas palustris TIE-1 phosphonate ABC transporter ATPase YP_001989802.1 808206 R 395960 CDS YP_001989803.1 192289198 6408422 809198..809875 1 NC_011004.1 TIGRFAM: phosphonate metabolim protein, transferase hexapeptide repeat family; KEGG: bbt:BBta_5859 acetyltransferase; phosphonate metabolism protein 809875 6408422 Rpal_0769 Rhodopseudomonas palustris TIE-1 phosphonate metabolism protein YP_001989803.1 809198 D 395960 CDS YP_001989804.1 192289199 6408423 809872..811065 1 NC_011004.1 TIGRFAM: phosphonate metabolism protein PhnM; PFAM: Amidohydrolase 3; KEGG: bja:blr7949 phosphonate metabolism protein; phosphonate metabolism protein PhnM 811065 6408423 Rpal_0770 Rhodopseudomonas palustris TIE-1 phosphonate metabolism protein PhnM YP_001989804.1 809872 D 395960 CDS YP_001989805.1 192289200 6408424 811088..811792 1 NC_011004.1 TIGRFAM: phosphonate metabolism protein; PFAM: protein of unknown function DUF1045; KEGG: bja:blr7950 hypothetical protein; phosphonate metabolism protein 811792 6408424 Rpal_0771 Rhodopseudomonas palustris TIE-1 phosphonate metabolism protein YP_001989805.1 811088 D 395960 CDS YP_001989806.1 192289201 6408425 complement(811789..812769) 1 NC_011004.1 KEGG: mpt:Mpe_A3544 hypothetical protein; hypothetical protein 812769 6408425 Rpal_0772 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989806.1 811789 R 395960 CDS YP_001989807.1 192289202 6408426 813014..813208 1 NC_011004.1 hypothetical protein 813208 6408426 Rpal_0773 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989807.1 813014 D 395960 CDS YP_001989808.1 192289203 6408427 complement(813501..814244) 1 NC_011004.1 KEGG: ecp:ECP_1925 hypothetical protein; hypothetical protein 814244 6408427 Rpal_0774 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989808.1 813501 R 395960 CDS YP_001989809.1 192289204 6408429 815154..815630 1 NC_011004.1 PFAM: protein of unknown function DUF123; KEGG: rru:Rru_A0067 protein of unknown function DUF123; hypothetical protein 815630 6408429 Rpal_0776 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989809.1 815154 D 395960 CDS YP_001989810.1 192289205 6408430 complement(815608..815931) 1 NC_011004.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: cte:CT1607 periplasmic divalent cation tolerance protein CutA; CutA1 divalent ion tolerance protein 815931 6408430 Rpal_0777 Rhodopseudomonas palustris TIE-1 CutA1 divalent ion tolerance protein YP_001989810.1 815608 R 395960 CDS YP_001989811.1 192289206 6408431 816031..816246 1 NC_011004.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: aba:Acid345_1009 hypothetical protein; FmdB family regulatory protein 816246 6408431 Rpal_0778 Rhodopseudomonas palustris TIE-1 FmdB family regulatory protein YP_001989811.1 816031 D 395960 CDS YP_001989812.1 192289207 6408432 816352..816864 1 NC_011004.1 KEGG: osa:4324453 hypothetical protein; hypothetical protein 816864 6408432 Rpal_0779 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989812.1 816352 D 395960 CDS YP_001989813.1 192289208 6408433 817036..817524 1 NC_011004.1 PFAM: PEBP family protein; KEGG: lbl:LBL_0708 phospholipid binding protein; PEBP family protein 817524 6408433 Rpal_0780 Rhodopseudomonas palustris TIE-1 PEBP family protein YP_001989813.1 817036 D 395960 CDS YP_001989814.1 192289209 6408434 817567..817827 1 NC_011004.1 hypothetical protein 817827 6408434 Rpal_0781 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989814.1 817567 D 395960 CDS YP_001989815.1 192289210 6408435 complement(818074..818775) 1 NC_011004.1 KEGG: bbt:BBta_3155 Cob(II)yrinic acid a,c-diamide reductase, BluB; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; cob(II)yrinic acid a,c-diamide reductase 818775 6408435 Rpal_0782 Rhodopseudomonas palustris TIE-1 cob(II)yrinic acid a,c-diamide reductase YP_001989815.1 818074 R 395960 CDS YP_001989816.1 192289211 6408436 complement(818772..819827) 1 NC_011004.1 KEGG: cak:Caul_2742 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 819827 6408436 Rpal_0783 Rhodopseudomonas palustris TIE-1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_001989816.1 818772 R 395960 CDS YP_001989817.1 192289212 6408437 820232..820663 1 NC_011004.1 PFAM: protein of unknown function DUF1636; KEGG: mrd:Mrad2831_3113 protein of unknown function DUF1636; hypothetical protein 820663 6408437 Rpal_0784 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989817.1 820232 D 395960 CDS YP_001989818.1 192289213 6408438 820660..821190 1 NC_011004.1 PFAM: cobalbumin biosynthesis protein; KEGG: mag:amb4425 adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; adenosylcobinamide-phosphate guanylyltransferase 821190 6408438 Rpal_0785 Rhodopseudomonas palustris TIE-1 adenosylcobinamide-phosphate guanylyltransferase YP_001989818.1 820660 D 395960 CDS YP_001989819.1 192289214 6408439 821194..822198 1 NC_011004.1 TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mrd:Mrad2831_3114 cobalamin biosynthesis protein CobW; cobalamin biosynthesis protein CobW 822198 6408439 Rpal_0786 Rhodopseudomonas palustris TIE-1 cobalamin biosynthesis protein CobW YP_001989819.1 821194 D 395960 CDS YP_001989820.1 192289215 6408440 822333..826082 1 NC_011004.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 826082 cobN 6408440 cobN Rhodopseudomonas palustris TIE-1 cobaltochelatase subunit CobN YP_001989820.1 822333 D 395960 CDS YP_001989821.1 192289216 6408441 826079..826705 1 NC_011004.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 826705 6408441 Rpal_0788 Rhodopseudomonas palustris TIE-1 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_001989821.1 826079 D 395960 CDS YP_001989822.1 192289217 6408442 826853..828337 1 NC_011004.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 828337 6408442 Rpal_0789 Rhodopseudomonas palustris TIE-1 cobyric acid synthase YP_001989822.1 826853 D 395960 CDS YP_001989823.1 192289218 6408443 complement(828310..829281) 1 NC_011004.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: sme:SMc04279 probable cobalamin biosynthesis transmembrane protein; cobalamin biosynthesis protein CobD 829281 6408443 Rpal_0790 Rhodopseudomonas palustris TIE-1 cobalamin biosynthesis protein CobD YP_001989823.1 828310 R 395960 CDS YP_001989824.1 192289219 6408444 complement(829283..830092) 1 NC_011004.1 PFAM: periplasmic binding protein; KEGG: nha:Nham_3728 periplasmic binding protein; periplasmic binding protein 830092 6408444 Rpal_0791 Rhodopseudomonas palustris TIE-1 periplasmic binding protein YP_001989824.1 829283 R 395960 CDS YP_001989825.1 192289220 6408445 830159..831148 1 NC_011004.1 TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: bcs:BCAN_A1318 threonine-phosphate decarboxylase; L-threonine-O-3-phosphate decarboxylase 831148 6408445 Rpal_0792 Rhodopseudomonas palustris TIE-1 L-threonine-O-3-phosphate decarboxylase YP_001989825.1 830159 D 395960 CDS YP_001989826.1 192289221 6408446 complement(831160..831939) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nwi:Nwi_3049 ABC transporter ATPase subunit; ABC transporter 831939 6408446 Rpal_0793 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001989826.1 831160 R 395960 CDS YP_001989827.1 192289222 6408447 complement(831936..832961) 1 NC_011004.1 PFAM: transport system permease protein; KEGG: nha:Nham_3730 transport system permease protein; transport system permease 832961 6408447 Rpal_0794 Rhodopseudomonas palustris TIE-1 transport system permease YP_001989827.1 831936 R 395960 CDS YP_001989828.1 192289223 6408448 complement(832969..834027) 1 NC_011004.1 TIGRFAM: high-affinity nickel-transporter; KEGG: bmv:BMASAVP1_A1617 high-affinity nickel transport protein; high-affinity nickel-transporter 834027 6408448 Rpal_0795 Rhodopseudomonas palustris TIE-1 high-affinity nickel-transporter YP_001989828.1 832969 R 395960 CDS YP_001989829.1 192289224 6408449 complement(834360..834683) 1 NC_011004.1 PFAM: small multidrug resistance protein; KEGG: bra:BRADO5344 quaternary ammonium compound-resistance protein SugE (SMR family); small multidrug resistance protein 834683 6408449 Rpal_0796 Rhodopseudomonas palustris TIE-1 small multidrug resistance protein YP_001989829.1 834360 R 395960 CDS YP_001989830.1 192289225 6408450 complement(834680..835417) 1 NC_011004.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mlo:mlr1575 hypothetical protein; type 12 methyltransferase 835417 6408450 Rpal_0797 Rhodopseudomonas palustris TIE-1 type 12 methyltransferase YP_001989830.1 834680 R 395960 CDS YP_001989831.1 192289226 6408451 835570..836793 1 NC_011004.1 KEGG: rsh:Rsph17029_2515 S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase; S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase 836793 6408451 Rpal_0798 Rhodopseudomonas palustris TIE-1 S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase YP_001989831.1 835570 D 395960 CDS YP_001989832.1 192289227 6408452 837348..838754 1 NC_011004.1 KEGG: bja:blr3941 hypothetical protein; hypothetical protein 838754 6408452 Rpal_0799 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989832.1 837348 D 395960 CDS YP_001989833.1 192289228 6408453 838765..839343 1 NC_011004.1 PFAM: TadE family protein; KEGG: bja:blr3942 hypothetical protein; TadE family protein 839343 6408453 Rpal_0800 Rhodopseudomonas palustris TIE-1 TadE family protein YP_001989833.1 838765 D 395960 CDS YP_001989834.1 192289229 6408454 839356..840045 1 NC_011004.1 KEGG: bja:blr3943 hypothetical protein; hypothetical protein 840045 6408454 Rpal_0801 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989834.1 839356 D 395960 CDS YP_001989835.1 192289230 6408455 840576..841469 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_3092 transcriptional regulatory protein, LysR family; LysR family transcriptional regulator 841469 6408455 Rpal_0802 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001989835.1 840576 D 395960 CDS YP_001989836.1 192289231 6408456 841734..842204 1 NC_011004.1 catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma 842204 6408456 Rpal_0803 Rhodopseudomonas palustris TIE-1 formate dehydrogenase subunit gamma YP_001989836.1 841734 D 395960 CDS YP_001989837.1 192289232 6408457 842201..843757 1 NC_011004.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: bja:bll3137 NADH dehydrogenase I chain F; NADH dehydrogenase (quinone) 843757 6408457 Rpal_0804 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase (quinone) YP_001989837.1 842201 D 395960 CDS YP_001989838.1 192289233 6408458 843769..846615 1 NC_011004.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: bja:bll3136 formate dehydrogenase alpha subunit; formate dehydrogenase subunit alpha 846615 6408458 Rpal_0805 Rhodopseudomonas palustris TIE-1 formate dehydrogenase subunit alpha YP_001989838.1 843769 D 395960 CDS YP_001989839.1 192289234 6408459 846615..847445 1 NC_011004.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 847445 6408459 Rpal_0806 Rhodopseudomonas palustris TIE-1 formate dehydrogenase accessory protein YP_001989839.1 846615 D 395960 CDS YP_001989840.1 192289235 6408460 847435..847650 1 NC_011004.1 KEGG: bja:bsl3134 NAD-dependent formate dehydrogenase; NAD-dependent formate dehydrogenase 847650 6408460 Rpal_0807 Rhodopseudomonas palustris TIE-1 NAD-dependent formate dehydrogenase YP_001989840.1 847435 D 395960 CDS YP_001989841.1 192289236 6408461 847714..849363 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr2314 MFS permease; major facilitator superfamily protein 849363 6408461 Rpal_0808 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001989841.1 847714 D 395960 CDS YP_001989842.1 192289237 6408462 849626..850879 1 NC_011004.1 KEGG: bra:BRADO0326 glucose/sorbosone dehydrogenase; glucose/sorbosone dehydrogenase 850879 6408462 Rpal_0809 Rhodopseudomonas palustris TIE-1 glucose/sorbosone dehydrogenase YP_001989842.1 849626 D 395960 CDS YP_001989843.1 192289238 6408463 851024..851620 1 NC_011004.1 KEGG: bra:BRADO0327 cytochrome C4 precursor; cytochrome C4 851620 6408463 Rpal_0810 Rhodopseudomonas palustris TIE-1 cytochrome C4 YP_001989843.1 851024 D 395960 CDS YP_001989844.1 192289239 6408464 851695..852804 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mxa:MXAN_3760 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 852804 6408464 Rpal_0811 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001989844.1 851695 D 395960 CDS YP_001989845.1 192289240 6408465 852801..853748 1 NC_011004.1 SMART: ATPase AAA; KEGG: bja:blr6138 hypothetical protein; ATPase AAA 853748 6408465 Rpal_0812 Rhodopseudomonas palustris TIE-1 ATPase AAA YP_001989845.1 852801 D 395960 CDS YP_001989846.1 192289241 6408466 853748..855139 1 NC_011004.1 PFAM: VWA containing CoxE family protein; KEGG: bja:blr6139 hypothetical protein; VWA containing CoxE family protein 855139 6408466 Rpal_0813 Rhodopseudomonas palustris TIE-1 VWA containing CoxE family protein YP_001989846.1 853748 D 395960 CDS YP_001989847.1 192289242 6408467 855316..856842 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bbt:BBta_0667 O-succinylbenzoate--CoA ligase; AMP-dependent synthetase and ligase 856842 6408467 Rpal_0814 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001989847.1 855316 D 395960 CDS YP_001989848.1 192289243 6408468 complement(857017..857301) 1 NC_011004.1 KEGG: rso:RSc2290 probable iron oxidase precursor oxidoreductase protein; iron oxidase oxidoreductase protein 857301 6408468 Rpal_0815 Rhodopseudomonas palustris TIE-1 iron oxidase oxidoreductase protein YP_001989848.1 857017 R 395960 CDS YP_001989849.1 192289244 6408469 complement(857441..859873) 1 NC_011004.1 KEGG: gur:Gura_3627 hypothetical protein; hypothetical protein 859873 6408469 Rpal_0816 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989849.1 857441 R 395960 CDS YP_001989850.1 192289245 6408470 complement(859972..861594) 1 NC_011004.1 TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: dar:Daro_1402 Doubled CXXCH motif; cytochrome C family protein 861594 6408470 Rpal_0817 Rhodopseudomonas palustris TIE-1 cytochrome C family protein YP_001989850.1 859972 R 395960 CDS YP_001989851.1 192289246 6408471 complement(862336..863382) 1 NC_011004.1 KEGG: nwi:Nwi_2757 sulphate transport system permease protein 1; TIGRFAM: sulfate ABC transporter ATPase subunit; PFAM: ABC transporter; SMART: ATPase AAA; sulfate ABC transporter ATPase 863382 6408471 Rpal_0818 Rhodopseudomonas palustris TIE-1 sulfate ABC transporter ATPase YP_001989851.1 862336 R 395960 CDS YP_001989852.1 192289247 6408472 complement(863372..864286) 1 NC_011004.1 TIGRFAM: sulfate ABC transporter inner membrane subunit; sulfate ABC transporter inner membrane subunit CysW; PFAM: ABC transporter inner membrane protein; KEGG: bja:blr1484 sulfate ABC transporter permease protein; sulfate ABC transporter permease 864286 6408472 Rpal_0819 Rhodopseudomonas palustris TIE-1 sulfate ABC transporter permease YP_001989852.1 863372 R 395960 CDS YP_001989853.1 192289248 6408473 complement(864291..865127) 1 NC_011004.1 TIGRFAM: sulfate ABC transporter inner membrane subunit; sulfate ABC transporter inner membrane subunit CysT; PFAM: ABC transporter inner membrane protein; KEGG: nha:Nham_3559 sulfate ABC transporter permease protein CysT; sulfate ABC transporter permease 865127 6408473 Rpal_0820 Rhodopseudomonas palustris TIE-1 sulfate ABC transporter permease YP_001989853.1 864291 R 395960 CDS YP_001989854.1 192289249 6408474 complement(865420..866409) 1 NC_011004.1 TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bbt:BBta_6977 sulfate transport protein (ABC superfamily, peri_bind); sulfate ABC transporter substrate-binding protein 866409 6408474 Rpal_0821 Rhodopseudomonas palustris TIE-1 sulfate ABC transporter substrate-binding protein YP_001989854.1 865420 R 395960 CDS YP_001989855.1 192289250 6408475 complement(866534..867274) 1 NC_011004.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 867274 6408475 Rpal_0822 Rhodopseudomonas palustris TIE-1 phosphoadenosine phosphosulfate reductase YP_001989855.1 866534 R 395960 CDS YP_001989856.1 192289251 6408476 867573..868442 1 NC_011004.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 868442 6408476 Rpal_0823 Rhodopseudomonas palustris TIE-1 sulfate adenylyltransferase subunit 2 YP_001989856.1 867573 D 395960 CDS YP_001989857.1 192289252 6408477 868464..870374 1 NC_011004.1 KEGG: nwi:Nwi_2764 adenylylsulfate kinase; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; adenylylsulfate kinase; elongation factor Tu domain 2 protein; sulfate adenylyltransferase, large subunit 870374 6408477 Rpal_0824 Rhodopseudomonas palustris TIE-1 sulfate adenylyltransferase, large subunit YP_001989857.1 868464 D 395960 CDS YP_001989858.1 192289253 6408478 complement(870381..871748) 1 NC_011004.1 KEGG: nar:Saro_2666 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; signal transduction histidine kinase 871748 6408478 Rpal_0825 Rhodopseudomonas palustris TIE-1 signal transduction histidine kinase YP_001989858.1 870381 R 395960 CDS YP_001989859.1 192289254 6408479 complement(871880..872857) 1 NC_011004.1 KEGG: bja:bll7916 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 872857 6408479 Rpal_0826 Rhodopseudomonas palustris TIE-1 oligopeptide/dipeptide ABC transporter ATPase YP_001989859.1 871880 R 395960 CDS YP_001989860.1 192289255 6408480 complement(872858..874270) 1 NC_011004.1 PFAM: Amidase; KEGG: bja:bll7917 glutamyl-tRNA(Gln) amidotransferase; amidase 874270 6408480 Rpal_0827 Rhodopseudomonas palustris TIE-1 amidase YP_001989860.1 872858 R 395960 CDS YP_001989861.1 192289256 6408481 complement(874267..874461) 1 NC_011004.1 KEGG: bbt:BBta_7146 hypothetical protein; hypothetical protein 874461 6408481 Rpal_0828 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989861.1 874267 R 395960 CDS YP_001989862.1 192289257 6408482 complement(874475..875533) 1 NC_011004.1 KEGG: bja:bll7918 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 875533 6408482 Rpal_0829 Rhodopseudomonas palustris TIE-1 oligopeptide/dipeptide ABC transporter ATPase YP_001989862.1 874475 R 395960 CDS YP_001989863.1 192289258 6408483 complement(875538..876428) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: azc:AZC_1552 ABC transporter permease protein; ABC transporter inner membrane protein 876428 6408483 Rpal_0830 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001989863.1 875538 R 395960 CDS YP_001989864.1 192289259 6408484 complement(876448..877401) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:bll7920 ABC transporter permease protein; ABC transporter inner membrane protein 877401 6408484 Rpal_0831 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001989864.1 876448 R 395960 CDS YP_001989865.1 192289260 6408485 complement(877599..879260) 1 NC_011004.1 PFAM: extracellular solute-binding protein family 5; KEGG: bja:bll7921 ABC transporter substrate-binding protein; 4-phytase 879260 6408485 Rpal_0832 Rhodopseudomonas palustris TIE-1 4-phytase YP_001989865.1 877599 R 395960 CDS YP_001989866.1 192289261 6408486 879448..881046 1 NC_011004.1 PFAM: extracellular solute-binding protein family 5; KEGG: bja:blr7922 ABC transporter substrate-binding protein; family 5 extracellular solute-binding protein 881046 6408486 Rpal_0833 Rhodopseudomonas palustris TIE-1 family 5 extracellular solute-binding protein YP_001989866.1 879448 D 395960 CDS YP_001989867.1 192289262 6408487 881377..881994 1 NC_011004.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rsq:Rsph17025_3983 hypothetical protein; type 12 methyltransferase 881994 6408487 Rpal_0834 Rhodopseudomonas palustris TIE-1 type 12 methyltransferase YP_001989867.1 881377 D 395960 CDS YP_001989868.1 192289263 6408488 complement(882050..882484) 1 NC_011004.1 KEGG: sil:SPO0636 EF hand domain protein; EF hand domain-containing protein 882484 6408488 Rpal_0835 Rhodopseudomonas palustris TIE-1 EF hand domain-containing protein YP_001989868.1 882050 R 395960 CDS YP_001989869.1 192289264 6408489 complement(882505..884868) 1 NC_011004.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: neu:NE1205 TonB-dependent receptor protein; TonB-dependent receptor 884868 6408489 Rpal_0836 Rhodopseudomonas palustris TIE-1 TonB-dependent receptor YP_001989869.1 882505 R 395960 CDS YP_001989870.1 192289265 6408490 885268..885972 1 NC_011004.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: smd:Smed_6276 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator 885972 6408490 Rpal_0837 Rhodopseudomonas palustris TIE-1 Crp/Fnr family transcriptional regulator YP_001989870.1 885268 D 395960 CDS YP_001989871.1 192289266 6408491 886078..887019 1 NC_011004.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: mlo:mll2240 hypothetical protein; PAS/PAC sensor-containing diguanylate cyclase 887019 6408491 Rpal_0838 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor-containing diguanylate cyclase YP_001989871.1 886078 D 395960 CDS YP_001989872.1 192289267 6408492 complement(887327..889186) 1 NC_011004.1 KEGG: psb:Psyr_3809 hypothetical protein; hypothetical protein 889186 6408492 Rpal_0839 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989872.1 887327 R 395960 CDS YP_001989873.1 192289268 6408493 complement(889183..889629) 1 NC_011004.1 KEGG: psb:Psyr_3808 hypothetical protein; hypothetical protein 889629 6408493 Rpal_0840 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989873.1 889183 R 395960 CDS YP_001989874.1 192289269 6408494 complement(889626..890840) 1 NC_011004.1 KEGG: psb:Psyr_3807 hypothetical protein; hypothetical protein 890840 6408494 Rpal_0841 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989874.1 889626 R 395960 CDS YP_001989875.1 192289270 6408496 complement(891569..891994) 1 NC_011004.1 PFAM: protein of unknown function DUF307; KEGG: bja:blr2954 hypothetical protein; hypothetical protein 891994 6408496 Rpal_0842 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989875.1 891569 R 395960 CDS YP_001989876.1 192289271 6408497 892203..892526 1 NC_011004.1 KEGG: bja:bsr4225 hypothetical protein; hypothetical protein 892526 6408497 Rpal_0843 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989876.1 892203 D 395960 CDS YP_001989877.1 192289272 6408498 complement(892559..894151) 1 NC_011004.1 PFAM: gamma-glutamyltranspeptidase; KEGG: bja:bll2229 similar to ACY1 bifunctional acylase; gamma-glutamyltransferase 894151 6408498 Rpal_0844 Rhodopseudomonas palustris TIE-1 gamma-glutamyltransferase YP_001989877.1 892559 R 395960 CDS YP_001989878.1 192289273 6408499 complement(894270..896909) 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: bja:blr4813 hypothetical protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 896909 6408499 Rpal_0845 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001989878.1 894270 R 395960 CDS YP_001989879.1 192289274 6408500 complement(897233..897634) 1 NC_011004.1 KEGG: sah:SaurJH1_0919 phage tape measure protein; hypothetical protein 897634 6408500 Rpal_0846 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989879.1 897233 R 395960 CDS YP_001989880.1 192289275 6408501 898066..898260 1 NC_011004.1 KEGG: bbt:BBta_0515 hypothetical protein; hypothetical protein 898260 6408501 Rpal_0847 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989880.1 898066 D 395960 CDS YP_001989881.1 192289276 6408502 complement(898261..899526) 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xau:Xaut_4077 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 899526 6408502 Rpal_0848 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001989881.1 898261 R 395960 CDS YP_001989882.1 192289277 6408503 complement(899607..899951) 1 NC_011004.1 KEGG: bra:BRADO0362 cytochrome C precursor (cytochrome C552)(CycB); cytochrome C (cytochrome C552)(CycB) 899951 6408503 Rpal_0849 Rhodopseudomonas palustris TIE-1 cytochrome C (cytochrome C552)(CycB) YP_001989882.1 899607 R 395960 CDS YP_001989883.1 192289278 6408504 complement(899960..900394) 1 NC_011004.1 KEGG: bja:blr0497 hypothetical protein; hypothetical protein 900394 6408504 Rpal_0850 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989883.1 899960 R 395960 CDS YP_001989884.1 192289279 6408505 complement(900583..902400) 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: nha:Nham_3276 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); diguanylate cyclase/phosphodiesterase 902400 6408505 Rpal_0851 Rhodopseudomonas palustris TIE-1 diguanylate cyclase/phosphodiesterase YP_001989884.1 900583 R 395960 CDS YP_001989885.1 192289280 6408506 902578..903420 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr0893 oxidoreductase; short-chain dehydrogenase/reductase SDR 903420 6408506 Rpal_0852 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001989885.1 902578 D 395960 CDS YP_001989886.1 192289281 6408507 complement(903545..904924) 1 NC_011004.1 PFAM: cytochrome P450; KEGG: bbt:BBta_7679 cytochrome P450 family protein; cytochrome P450 904924 6408507 Rpal_0853 Rhodopseudomonas palustris TIE-1 cytochrome P450 YP_001989886.1 903545 R 395960 CDS YP_001989887.1 192289282 6408508 complement(905045..906439) 1 NC_011004.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bja:blr4264 adenylate cyclase protein; adenylate/guanylate cyclase 906439 6408508 Rpal_0854 Rhodopseudomonas palustris TIE-1 adenylate/guanylate cyclase YP_001989887.1 905045 R 395960 CDS YP_001989888.1 192289283 6408509 906496..907470 1 NC_011004.1 metalloprotease; heat shock protein HtpX 907470 6408509 Rpal_0855 Rhodopseudomonas palustris TIE-1 heat shock protein HtpX YP_001989888.1 906496 D 395960 CDS YP_001989889.1 192289284 6408510 907723..909138 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr0898 probable ATP-binding protein; major facilitator superfamily protein 909138 6408510 Rpal_0856 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001989889.1 907723 D 395960 CDS YP_001989890.1 192289285 6408511 complement(909135..910322) 1 NC_011004.1 PFAM: aminotransferase class V; KEGG: bra:BRADO6985 aminotransferase, class V; serine--glyoxylate aminotransferase; class V aminotransferase 910322 6408511 Rpal_0857 Rhodopseudomonas palustris TIE-1 class V aminotransferase YP_001989890.1 909135 R 395960 CDS YP_001989891.1 192289286 6408512 complement(910378..911232) 1 NC_011004.1 KEGG: mlo:mlr2577 hypothetical protein; hypothetical protein 911232 6408512 Rpal_0858 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989891.1 910378 R 395960 CDS YP_001989892.1 192289287 6408513 complement(911266..911997) 1 NC_011004.1 PFAM: nuclease (SNase domain protein); KEGG: bbt:BBta_0545 nuclease-like protein; nuclease 911997 6408513 Rpal_0859 Rhodopseudomonas palustris TIE-1 nuclease YP_001989892.1 911266 R 395960 CDS YP_001989893.1 192289288 6408514 complement(912111..913850) 1 NC_011004.1 KEGG: nha:Nham_3607 hypothetical protein; hypothetical protein 913850 6408514 Rpal_0860 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989893.1 912111 R 395960 CDS YP_001989894.1 192289289 6408515 914305..915171 1 NC_011004.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: bja:bll0370 hypothetical protein; peptidase C14 caspase catalytic subunit p20 915171 6408515 Rpal_0861 Rhodopseudomonas palustris TIE-1 peptidase C14 caspase catalytic subunit p20 YP_001989894.1 914305 D 395960 CDS YP_001989895.1 192289290 6408516 complement(915262..916020) 1 NC_011004.1 PFAM: carbonic anhydrase; KEGG: bbt:BBta_0791 carbonic anhydrase (carbonate dehydratase); carbonate dehydratase 916020 6408516 Rpal_0862 Rhodopseudomonas palustris TIE-1 carbonate dehydratase YP_001989895.1 915262 R 395960 CDS YP_001989896.1 192289291 6408517 complement(916107..916739) 1 NC_011004.1 PFAM: peptidase S24 and S26 domain protein; KEGG: nha:Nham_0557 phage repressor; phage repressor 916739 6408517 Rpal_0863 Rhodopseudomonas palustris TIE-1 phage repressor YP_001989896.1 916107 R 395960 CDS YP_001989897.1 192289292 6408518 917070..917414 1 NC_011004.1 PFAM: protein of unknown function DUF952; KEGG: nha:Nham_0556 protein of unknown function DUF952; hypothetical protein 917414 6408518 Rpal_0864 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989897.1 917070 D 395960 CDS YP_001989898.1 192289293 6408519 917411..918505 1 NC_011004.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 918505 6408519 Rpal_0865 Rhodopseudomonas palustris TIE-1 dihydroorotate dehydrogenase 2 YP_001989898.1 917411 D 395960 CDS YP_001989899.1 192289294 6408520 complement(918642..919376) 1 NC_011004.1 PFAM: beta-lactamase domain protein; KEGG: bja:bll1142 hypothetical protein; beta-lactamase domain-containing protein 919376 6408520 Rpal_0866 Rhodopseudomonas palustris TIE-1 beta-lactamase domain-containing protein YP_001989899.1 918642 R 395960 CDS YP_001989900.1 192289295 6408521 complement(919520..920227) 1 NC_011004.1 PFAM: carbonic anhydrase; KEGG: azc:AZC_0918 carbonic anhydrase; carbonic anhydrase 920227 6408521 Rpal_0867 Rhodopseudomonas palustris TIE-1 carbonic anhydrase YP_001989900.1 919520 R 395960 CDS YP_001989901.1 192289296 6408522 complement(920365..921687) 1 NC_011004.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bja:bll1141 DNA-damage-inducible protein F; MATE efflux family protein 921687 6408522 Rpal_0868 Rhodopseudomonas palustris TIE-1 MATE efflux family protein YP_001989901.1 920365 R 395960 CDS YP_001989902.1 192289297 6408523 complement(921706..922008) 1 NC_011004.1 KEGG: nwi:Nwi_0463 hypothetical protein; hypothetical protein 922008 6408523 Rpal_0869 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989902.1 921706 R 395960 CDS YP_001989903.1 192289298 6408524 complement(922080..923948) 1 NC_011004.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase 923948 6408524 Rpal_0870 Rhodopseudomonas palustris TIE-1 ATP-dependent DNA ligase YP_001989903.1 922080 R 395960 CDS YP_001989904.1 192289299 6408525 complement(923945..924991) 1 NC_011004.1 KEGG: bbt:BBta_0799 metallo-hydrolase/oxidoreductase; metallo-hydrolase/oxidoreductase 924991 6408525 Rpal_0871 Rhodopseudomonas palustris TIE-1 metallo-hydrolase/oxidoreductase YP_001989904.1 923945 R 395960 CDS YP_001989905.1 192289300 6408526 925050..925985 1 NC_011004.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bja:blr1146 hypothetical protein; type 11 methyltransferase 925985 6408526 Rpal_0872 Rhodopseudomonas palustris TIE-1 type 11 methyltransferase YP_001989905.1 925050 D 395960 CDS YP_001989906.1 192289301 6408527 complement(926137..927486) 1 NC_011004.1 PFAM: porin; KEGG: nha:Nham_0239 outer membrane protein; porin 927486 6408527 Rpal_0873 Rhodopseudomonas palustris TIE-1 porin YP_001989906.1 926137 R 395960 CDS YP_001989907.1 192289302 6408528 927830..929050 1 NC_011004.1 KEGG: bbt:BBta_0801 amino-acid ABC transport system, periplasmic binding protein; amino-acid ABC transport system, periplasmic binding protein 929050 6408528 Rpal_0874 Rhodopseudomonas palustris TIE-1 amino-acid ABC transport system, periplasmic binding protein YP_001989907.1 927830 D 395960 CDS YP_001989908.1 192289303 6408529 929226..931952 1 NC_011004.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: bbt:BBta_0802 ATP dependent DNA helicase; DEAD/DEAH box helicase 931952 6408529 Rpal_0875 Rhodopseudomonas palustris TIE-1 DEAD/DEAH box helicase YP_001989908.1 929226 D 395960 CDS YP_001989909.1 192289304 6408530 932017..932739 1 NC_011004.1 KEGG: nha:Nham_0241 metallophosphoesterase; metallophosphoesterase 932739 6408530 Rpal_0876 Rhodopseudomonas palustris TIE-1 metallophosphoesterase YP_001989909.1 932017 D 395960 CDS YP_001989910.1 192289305 6408531 complement(932884..933747) 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll1150 transcriptional regulatory protein; LysR family transcriptional regulator 933747 6408531 Rpal_0877 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001989910.1 932884 R 395960 CDS YP_001989911.1 192289306 6408532 933846..934766 1 NC_011004.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr1151 hypothetical protein; hypothetical protein 934766 6408532 Rpal_0878 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989911.1 933846 D 395960 CDS YP_001989912.1 192289307 6408533 934852..936198 1 NC_011004.1 KEGG: bja:bll8038 manganese transport protein; manganese transport protein 936198 6408533 Rpal_0879 Rhodopseudomonas palustris TIE-1 manganese transport protein YP_001989912.1 934852 D 395960 CDS YP_001989913.1 192289308 6408534 complement(936363..937163) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bbt:BBta_0806 exported protein of unknown function; hypothetical protein 937163 6408534 Rpal_0880 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989913.1 936363 R 395960 CDS YP_001989914.1 192289309 6408535 complement(937160..938122) 1 NC_011004.1 PFAM: protein of unknown function DUF81; KEGG: bja:bll1154 hypothetical protein; hypothetical protein 938122 6408535 Rpal_0881 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989914.1 937160 R 395960 CDS YP_001989915.1 192289310 6408536 complement(938359..941691) 1 NC_011004.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: bja:bll1155 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 941691 6408536 Rpal_0882 Rhodopseudomonas palustris TIE-1 Sel1 domain-containing protein repeat-containing protein YP_001989915.1 938359 R 395960 CDS YP_001989916.1 192289311 6408537 complement(941945..942502) 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: bja:blr0601 transcriptional regulatory protein; TetR family transcriptional regulator 942502 6408537 Rpal_0883 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001989916.1 941945 R 395960 CDS YP_001989917.1 192289312 6408538 942835..943221 1 NC_011004.1 KEGG: bra:BRADO6726 hypothetical protein; hypothetical protein 943221 6408538 Rpal_0884 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989917.1 942835 D 395960 CDS YP_001989918.1 192289313 6408539 943315..945105 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bra:BRADO6725 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 945105 6408539 Rpal_0885 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001989918.1 943315 D 395960 CDS YP_001989919.1 192289314 6408540 945276..946484 1 NC_011004.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 946484 6408540 Rpal_0886 Rhodopseudomonas palustris TIE-1 acetyl-CoA acetyltransferase YP_001989919.1 945276 D 395960 CDS YP_001989920.1 192289315 6408541 946609..948825 1 NC_011004.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bbt:BBta_0817 anaerobic fatty acid oxidation complex protein; 3-hydroxyacyl-CoA dehydrogenase 948825 6408541 Rpal_0887 Rhodopseudomonas palustris TIE-1 3-hydroxyacyl-CoA dehydrogenase YP_001989920.1 946609 D 395960 CDS YP_001989921.1 192289316 6408542 complement(949277..949891) 1 NC_011004.1 PFAM: glutathione S-transferase domain; KEGG: bja:bll1162 glutathione S-transferase; glutathione S-transferase domain-containing protein 949891 6408542 Rpal_0888 Rhodopseudomonas palustris TIE-1 glutathione S-transferase domain-containing protein YP_001989921.1 949277 R 395960 CDS YP_001989922.1 192289317 6408543 950013..950504 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: bra:BRADO6719 transcriptional regulator, MarR family; MarR family transcriptional regulator 950504 6408543 Rpal_0889 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001989922.1 950013 D 395960 CDS YP_001989923.1 192289318 6408544 950598..951968 1 NC_011004.1 KEGG: bja:blr1164 glutathione synthetase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GCS2; glutamate/cysteine ligase 951968 6408544 Rpal_0890 Rhodopseudomonas palustris TIE-1 glutamate/cysteine ligase YP_001989923.1 950598 D 395960 CDS YP_001989924.1 192289319 6408545 952114..952665 1 NC_011004.1 SMART: Apple; KEGG: bja:blr1165 hypothetical protein; hypothetical protein 952665 6408545 Rpal_0891 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989924.1 952114 D 395960 CDS YP_001989925.1 192289320 6408546 complement(952699..953469) 1 NC_011004.1 KEGG: nha:Nham_0252 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 953469 6408546 Rpal_0892 Rhodopseudomonas palustris TIE-1 signal peptidase I YP_001989925.1 952699 R 395960 CDS YP_001989926.1 192289321 6408547 complement(953466..954893) 1 NC_011004.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: bbt:BBta_0825 peptidase TldD; peptidase U62 modulator of DNA gyrase 954893 6408547 Rpal_0893 Rhodopseudomonas palustris TIE-1 peptidase U62 modulator of DNA gyrase YP_001989926.1 953466 R 395960 CDS YP_001989927.1 192289322 6408548 955015..955236 1 NC_011004.1 PFAM: protein of unknown function DUF433; KEGG: ana:asr2958 hypothetical protein; hypothetical protein 955236 6408548 Rpal_0894 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989927.1 955015 D 395960 CDS YP_001989928.1 192289323 6408549 955236..955565 1 NC_011004.1 KEGG: rca:Rcas_0081 hypothetical protein; hypothetical protein 955565 6408549 Rpal_0895 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989928.1 955236 D 395960 CDS YP_001989929.1 192289324 6408550 955648..956118 1 NC_011004.1 PFAM: regulatory protein MarR; Penicillinase repressor; KEGG: rso:RS02614 transcription regulator protein; MarR family transcriptional regulator 956118 6408550 Rpal_0896 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001989929.1 955648 D 395960 CDS YP_001989930.1 192289325 6408551 956233..956658 1 NC_011004.1 PFAM: OsmC family protein; KEGG: pmy:Pmen_2630 OsmC family protein; OsmC family protein 956658 6408551 Rpal_0897 Rhodopseudomonas palustris TIE-1 OsmC family protein YP_001989930.1 956233 D 395960 CDS YP_001989931.1 192289326 6408552 complement(956891..957439) 1 NC_011004.1 PFAM: Invasion associated locus B family protein; KEGG: nwi:Nwi_0222 invasion associated locus B; invasion associated locus B family protein 957439 6408552 Rpal_0898 Rhodopseudomonas palustris TIE-1 invasion associated locus B family protein YP_001989931.1 956891 R 395960 CDS YP_001989932.1 192289327 6408553 957848..958705 1 NC_011004.1 KEGG: bbt:BBta_0828 cytochrome C oxidase, subunit II; TIGRFAM: cytochrome C oxidase, subunit II; PFAM: cytochrome C oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; cytochrome C oxidase subunit II 958705 6408553 Rpal_0899 Rhodopseudomonas palustris TIE-1 cytochrome C oxidase subunit II YP_001989932.1 957848 D 395960 CDS YP_001989933.1 192289328 6408554 958773..960398 1 NC_011004.1 KEGG: bra:BRADO6706 cytochrome C oxidase, subunit I; TIGRFAM: cytochrome C oxidase, subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome C oxidase subunit I 960398 6408554 Rpal_0900 Rhodopseudomonas palustris TIE-1 cytochrome C oxidase subunit I YP_001989933.1 958773 D 395960 CDS YP_001989934.1 192289329 6408555 960471..961409 1 NC_011004.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 961409 6408555 Rpal_0901 Rhodopseudomonas palustris TIE-1 protoheme IX farnesyltransferase YP_001989934.1 960471 D 395960 CDS YP_001989935.1 192289330 6408556 961421..961588 1 NC_011004.1 KEGG: bja:bsr1173 CoxF protein; CoxF protein 961588 6408556 Rpal_0902 Rhodopseudomonas palustris TIE-1 CoxF protein YP_001989935.1 961421 D 395960 CDS YP_001989936.1 192289331 6408557 961603..962229 1 NC_011004.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 962229 6408557 Rpal_0903 Rhodopseudomonas palustris TIE-1 cytochrome C oxidase assembly protein YP_001989936.1 961603 D 395960 CDS YP_001989937.1 192289332 6408558 962301..963155 1 NC_011004.1 PFAM: cytochrome C oxidase subunit III; KEGG: bbt:BBta_0833 cytochrome C oxidase, subunit III; cytochrome C oxidase subunit III 963155 6408558 Rpal_0904 Rhodopseudomonas palustris TIE-1 cytochrome C oxidase subunit III YP_001989937.1 962301 D 395960 CDS YP_001989938.1 192289333 6408559 963318..963713 1 NC_011004.1 PFAM: protein of unknown function DUF983; KEGG: bja:blr1176 hypothetical protein; hypothetical protein 963713 6408559 Rpal_0905 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989938.1 963318 D 395960 CDS YP_001989939.1 192289334 6408560 963710..964513 1 NC_011004.1 PFAM: Surfeit locus 1 family protein; KEGG: bja:blr1177 SUR1-like protein; surfeit locus 1 family protein 964513 6408560 Rpal_0906 Rhodopseudomonas palustris TIE-1 surfeit locus 1 family protein YP_001989939.1 963710 D 395960 CDS YP_001989940.1 192289335 6408561 964660..966078 1 NC_011004.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 966078 6408561 Rpal_0907 Rhodopseudomonas palustris TIE-1 threonine synthase YP_001989940.1 964660 D 395960 CDS YP_001989941.1 192289336 6408562 966075..967364 1 NC_011004.1 PFAM: peptidase M16 domain protein; KEGG: bja:blr1182 mitochondrial processing peptidase-like protein; peptidase M16 domain-containing protein 967364 6408562 Rpal_0908 Rhodopseudomonas palustris TIE-1 peptidase M16 domain-containing protein YP_001989941.1 966075 D 395960 CDS YP_001989942.1 192289337 6408563 967426..968013 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr1183 ribosomal-protein-alanine N-acetyltransferase; N-acetyltransferase GCN5 968013 6408563 Rpal_0909 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001989942.1 967426 D 395960 CDS YP_001989943.1 192289338 6408564 968132..968764 1 NC_011004.1 KEGG: bja:blr1184 hypothetical protein; hypothetical protein 968764 6408564 Rpal_0910 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989943.1 968132 D 395960 CDS YP_001989944.1 192289339 6408565 complement(968895..969386) 1 NC_011004.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: nha:Nham_0266 H+-transporting two-sector ATPase, B/B' subunit; H+transporting two-sector ATPase subunit B/B' 969386 6408565 Rpal_0911 Rhodopseudomonas palustris TIE-1 H+transporting two-sector ATPase subunit B/B' YP_001989944.1 968895 R 395960 CDS YP_001989945.1 192289340 6408566 complement(969392..969949) 1 NC_011004.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: nwi:Nwi_0236 H+-transporting two-sector ATPase, B/B' subunit; H+transporting two-sector ATPase subunit B/B' 969949 6408566 Rpal_0912 Rhodopseudomonas palustris TIE-1 H+transporting two-sector ATPase subunit B/B' YP_001989945.1 969392 R 395960 CDS YP_001989946.1 192289341 6408567 complement(970007..970234) 1 NC_011004.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 970234 6408567 Rpal_0913 Rhodopseudomonas palustris TIE-1 F0F1 ATP synthase subunit C YP_001989946.1 970007 R 395960 CDS YP_001989947.1 192289342 6408568 complement(970283..971029) 1 NC_011004.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 971029 6408568 Rpal_0914 Rhodopseudomonas palustris TIE-1 F0F1 ATP synthase subunit A YP_001989947.1 970283 R 395960 CDS YP_001989948.1 192289343 6408569 complement(971099..971485) 1 NC_011004.1 KEGG: nha:Nham_0270 FoF1 ATP synthase, subunit I; FoF1 ATP synthase subunit I 971485 6408569 Rpal_0915 Rhodopseudomonas palustris TIE-1 FoF1 ATP synthase subunit I YP_001989948.1 971099 R 395960 CDS YP_001989949.1 192289344 6408570 971788..972411 1 NC_011004.1 PFAM: DSBA oxidoreductase; KEGG: bbt:BBta_0848 hypothetical protein; DSBA oxidoreductase 972411 6408570 Rpal_0916 Rhodopseudomonas palustris TIE-1 DSBA oxidoreductase YP_001989949.1 971788 D 395960 CDS YP_001989950.1 192289345 6408571 972457..973041 1 NC_011004.1 KEGG: bja:blr1191 hypothetical protein; hypothetical protein 973041 6408571 Rpal_0917 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989950.1 972457 D 395960 CDS YP_001989951.1 192289346 6408572 973065..973538 1 NC_011004.1 PFAM: protein of unknown function UPF0047; KEGG: bja:blr1192 hypothetical protein; hypothetical protein 973538 6408572 Rpal_0918 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989951.1 973065 D 395960 CDS YP_001989952.1 192289347 6408573 complement(973736..975400) 1 NC_011004.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bbt:BBta_0851 sugar transporter MFS family; general substrate transporter 975400 6408573 Rpal_0919 Rhodopseudomonas palustris TIE-1 general substrate transporter YP_001989952.1 973736 R 395960 CDS YP_001989953.1 192289348 6408574 975737..976414 1 NC_011004.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bja:blr1194 two-component response regulator; LuxR family transcriptional regulator 976414 6408574 Rpal_0920 Rhodopseudomonas palustris TIE-1 LuxR family transcriptional regulator YP_001989953.1 975737 D 395960 CDS YP_001989954.1 192289349 6408575 complement(976576..980085) 1 NC_011004.1 PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bbt:BBta_0860 two-component hybrid sensor histidine kinase and response regulator; integral membrane sensor hybrid histidine kinase 980085 6408575 Rpal_0921 Rhodopseudomonas palustris TIE-1 integral membrane sensor hybrid histidine kinase YP_001989954.1 976576 R 395960 CDS YP_001989955.1 192289350 6408576 complement(980273..981502) 1 NC_011004.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 981502 6408576 Rpal_0922 Rhodopseudomonas palustris TIE-1 5-aminolevulinate synthase YP_001989955.1 980273 R 395960 CDS YP_001989956.1 192289351 6408577 complement(981723..982787) 1 NC_011004.1 PFAM: beta-lactamase domain protein; KEGG: bja:bll1202 hypothetical protein; beta-lactamase domain-containing protein 982787 6408577 Rpal_0923 Rhodopseudomonas palustris TIE-1 beta-lactamase domain-containing protein YP_001989956.1 981723 R 395960 CDS YP_001989957.1 192289352 6408578 complement(982953..985091) 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:bll1203 probable methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 985091 6408578 Rpal_0924 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001989957.1 982953 R 395960 CDS YP_001989958.1 192289353 6408579 complement(985307..986038) 1 NC_011004.1 PFAM: porin; KEGG: bra:BRADO6669 conserved hypothetical protein; outer-membrane immunogenic protein precursor; secreted protein; porin 986038 6408579 Rpal_0925 Rhodopseudomonas palustris TIE-1 porin YP_001989958.1 985307 R 395960 CDS YP_001989959.1 192289354 6408580 986608..987357 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_3428 ABC transporter; ABC transporter 987357 6408580 Rpal_0926 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001989959.1 986608 D 395960 CDS YP_001989960.1 192289355 6408581 987362..988234 1 NC_011004.1 PFAM: ABC transporter; KEGG: nha:Nham_3427 ABC-3; ABC transporter 988234 6408581 Rpal_0927 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001989960.1 987362 D 395960 CDS YP_001989961.1 192289356 6408582 988240..989157 1 NC_011004.1 PFAM: periplasmic solute binding protein; KEGG: nha:Nham_3426 periplasmic solute binding protein; periplasmic solute binding protein 989157 6408582 Rpal_0928 Rhodopseudomonas palustris TIE-1 periplasmic solute binding protein YP_001989961.1 988240 D 395960 CDS YP_001989962.1 192289357 6408583 989304..990353 1 NC_011004.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bbt:BBta_1342 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein P47K 990353 6408583 Rpal_0929 Rhodopseudomonas palustris TIE-1 cobalamin synthesis protein P47K YP_001989962.1 989304 D 395960 CDS YP_001989963.1 192289358 6408584 990350..991369 1 NC_011004.1 SMART: hypothetical protein; KEGG: bja:bll7767 hypothetical protein; hypothetical protein 991369 6408584 Rpal_0930 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989963.1 990350 D 395960 CDS YP_001989964.1 192289359 6408585 991404..992126 1 NC_011004.1 PFAM: MgtC/SapB transporter; KEGG: bja:bll7766 hypothetical protein; MgtC/SapB transporter 992126 6408585 Rpal_0931 Rhodopseudomonas palustris TIE-1 MgtC/SapB transporter YP_001989964.1 991404 D 395960 CDS YP_001989965.1 192289360 6408586 992187..992585 1 NC_011004.1 KEGG: bra:BRADO6265 conserved hypothetical protein; signal peptide; hypothetical protein 992585 6408586 Rpal_0932 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989965.1 992187 D 395960 CDS YP_001989966.1 192289361 6408587 complement(992855..994285) 1 NC_011004.1 PFAM: homospermidine synthase; KEGG: nwi:Nwi_0921 homospermidine synthase; homospermidine synthase 994285 6408587 Rpal_0933 Rhodopseudomonas palustris TIE-1 homospermidine synthase YP_001989966.1 992855 R 395960 CDS YP_001989967.1 192289362 6408588 complement(994395..994799) 1 NC_011004.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: nha:Nham_3421 GreA/GreB family elongation factor; GreA/GreB family elongation factor 994799 6408588 Rpal_0934 Rhodopseudomonas palustris TIE-1 GreA/GreB family elongation factor YP_001989967.1 994395 R 395960 CDS YP_001989968.1 192289363 6408589 complement(995094..995480) 1 NC_011004.1 PFAM: Endoribonuclease L-PSP; KEGG: bja:blr7761 hypothetical protein; endoribonuclease L-PSP 995480 6408589 Rpal_0935 Rhodopseudomonas palustris TIE-1 endoribonuclease L-PSP YP_001989968.1 995094 R 395960 CDS YP_001989969.1 192289364 6408590 complement(995578..995736) 1 NC_011004.1 hypothetical protein 995736 6408590 Rpal_0936 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989969.1 995578 R 395960 CDS YP_001989970.1 192289365 6408591 complement(995747..996334) 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr7760 hypothetical protein; N-acetyltransferase GCN5 996334 6408591 Rpal_0937 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001989970.1 995747 R 395960 CDS YP_001989971.1 192289366 6408592 complement(996477..997619) 1 NC_011004.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bja:blr7759 ornithine decarboxylase; ornithine decarboxylase 997619 6408592 Rpal_0938 Rhodopseudomonas palustris TIE-1 ornithine decarboxylase YP_001989971.1 996477 R 395960 CDS YP_001989972.1 192289367 6408593 complement(998283..998543) 1 NC_011004.1 KEGG: bbt:BBta_1350 exported protein of unknown function; hypothetical protein 998543 6408593 Rpal_0939 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989972.1 998283 R 395960 CDS YP_001989973.1 192289368 6408594 998752..1000842 1 NC_011004.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: bja:bll7756 peptidyl-dipeptidase; peptidyl-dipeptidase Dcp 1000842 6408594 Rpal_0940 Rhodopseudomonas palustris TIE-1 peptidyl-dipeptidase Dcp YP_001989973.1 998752 D 395960 CDS YP_001989974.1 192289369 6408595 1000847..1001500 1 NC_011004.1 PFAM: protein of unknown function DUF1007; KEGG: bja:bll7755 hypothetical protein; hypothetical protein 1001500 6408595 Rpal_0941 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989974.1 1000847 D 395960 CDS YP_001989975.1 192289370 6408596 1001656..1002810 1 NC_011004.1 PFAM: high-affinity nickel-transporter; KEGG: bja:bll7754 hypothetical protein; high-affinity nickel-transporter 1002810 6408596 Rpal_0942 Rhodopseudomonas palustris TIE-1 high-affinity nickel-transporter YP_001989975.1 1001656 D 395960 CDS YP_001989976.1 192289371 6408597 1002986..1004023 1 NC_011004.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1004023 hemH 6408597 hemH Rhodopseudomonas palustris TIE-1 ferrochelatase YP_001989976.1 1002986 D 395960 CDS YP_001989977.1 192289372 6408598 1004180..1005175 1 NC_011004.1 PFAM: band 7 protein; KEGG: bja:bll7750 hypothetical protein; hypothetical protein 1005175 6408598 Rpal_0944 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989977.1 1004180 D 395960 CDS YP_001989978.1 192289373 6408599 1005192..1005641 1 NC_011004.1 PFAM: protein of unknown function DUF107; KEGG: bbt:BBta_1360 membrane protein of unknown function; hypothetical protein 1005641 6408599 Rpal_0945 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989978.1 1005192 D 395960 CDS YP_001989979.1 192289374 6408600 complement(1005745..1006605) 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: rle:RL2634 AraC family transcriptional regulator; AraC family transcriptional regulator 1006605 6408600 Rpal_0946 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001989979.1 1005745 R 395960 CDS YP_001989980.1 192289375 6408601 complement(1006955..1007968) 1 NC_011004.1 KEGG: nha:Nham_3413 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 1007968 6408601 Rpal_0947 Rhodopseudomonas palustris TIE-1 KpsF/GutQ family protein YP_001989980.1 1006955 R 395960 CDS YP_001989981.1 192289376 6408602 1008173..1009888 1 NC_011004.1 KEGG: bja:bll7745 hypothetical protein; hypothetical protein 1009888 6408602 Rpal_0948 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989981.1 1008173 D 395960 CDS YP_001989982.1 192289377 6408603 1010001..1011017 1 NC_011004.1 KEGG: bbt:BBta_4227 membrane protein of unknown function; hypothetical protein 1011017 6408603 Rpal_0949 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989982.1 1010001 D 395960 CDS YP_001989983.1 192289378 6408604 complement(1011007..1011858) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bxe:Bxe_B0493 ABC nitrate/sulfonate/bicarbonate family transporter inner membrane subunit; ABC transporter inner membrane protein 1011858 6408604 Rpal_0950 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001989983.1 1011007 R 395960 CDS YP_001989984.1 192289379 6408605 complement(1011968..1012762) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rfr:Rfer_3115 ABC transporter; ABC transporter 1012762 6408605 Rpal_0951 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001989984.1 1011968 R 395960 CDS YP_001989985.1 192289380 6408606 complement(1013011..1014009) 1 NC_011004.1 KEGG: xau:Xaut_1529 substrate-binding component of ABC transporter; ABC transporter substrate-binding protein 1014009 6408606 Rpal_0952 Rhodopseudomonas palustris TIE-1 ABC transporter substrate-binding protein YP_001989985.1 1013011 R 395960 CDS YP_001989986.1 192289381 6408607 complement(1014137..1014409) 1 NC_011004.1 KEGG: bra:BRADO1091 hypothetical protein; hypothetical protein 1014409 6408607 Rpal_0953 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989986.1 1014137 R 395960 CDS YP_001989987.1 192289382 6408608 1014577..1016085 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bja:bll1500 hypothetical protein; diguanylate cyclase 1016085 6408608 Rpal_0954 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001989987.1 1014577 D 395960 CDS YP_001989988.1 192289383 6408609 complement(1016116..1016991) 1 NC_011004.1 KEGG: bbt:BBta_6959 glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 1016991 6408609 Rpal_0955 Rhodopseudomonas palustris TIE-1 UTP-glucose-1-phosphate uridylyltransferase YP_001989988.1 1016116 R 395960 CDS YP_001989989.1 192289384 6408610 complement(1017115..1018059) 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: bja:bll7739 lysophospholipase; alpha/beta hydrolase fold protein 1018059 6408610 Rpal_0956 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001989989.1 1017115 R 395960 CDS YP_001989990.1 192289385 6408611 1018280..1018756 1 NC_011004.1 PFAM: heat shock protein Hsp20; KEGG: nwi:Nwi_2952 heat shock protein HSP20; heat shock protein Hsp20 1018756 6408611 Rpal_0957 Rhodopseudomonas palustris TIE-1 heat shock protein Hsp20 YP_001989990.1 1018280 D 395960 CDS YP_001989991.1 192289386 6408612 complement(1018898..1019674) 1 NC_011004.1 KEGG: bja:bll7742 hypothetical protein; hypothetical protein 1019674 6408612 Rpal_0958 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989991.1 1018898 R 395960 CDS YP_001989992.1 192289387 6408613 1020134..1024861 1 NC_011004.1 PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: nha:Nham_1138 glutamate synthase (ferredoxin); glutamate synthase 1024861 6408613 Rpal_0959 Rhodopseudomonas palustris TIE-1 glutamate synthase YP_001989992.1 1020134 D 395960 CDS YP_001989993.1 192289388 6408614 1025034..1026488 1 NC_011004.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 1026488 gltD 6408614 gltD Rhodopseudomonas palustris TIE-1 glutamate synthase subunit beta YP_001989993.1 1025034 D 395960 CDS YP_001989994.1 192289389 6408615 1026846..1027250 1 NC_011004.1 PFAM: protein of unknown function DUF559; KEGG: cak:Caul_1522 protein of unknown function DUF559; hypothetical protein 1027250 6408615 Rpal_0961 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989994.1 1026846 D 395960 CDS YP_001989995.1 192289390 6408616 complement(1027700..1029184) 1 NC_011004.1 KEGG: cph:Cpha266_0459 hypothetical protein; hypothetical protein 1029184 6408616 Rpal_0962 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989995.1 1027700 R 395960 CDS YP_001989996.1 192289391 6408617 complement(1030224..1031000) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_6964 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR 1031000 6408617 Rpal_0963 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001989996.1 1030224 R 395960 CDS YP_001989997.1 192289392 6408618 1031140..1031874 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bja:blr1495 oxidoreductase; short-chain dehydrogenase/reductase SDR 1031874 6408618 Rpal_0964 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001989997.1 1031140 D 395960 CDS YP_001989998.1 192289393 6408619 complement(1031946..1033631) 1 NC_011004.1 PFAM: protein of unknown function DUF459; KEGG: bja:bll1497 hypothetical protein; hypothetical protein 1033631 6408619 Rpal_0965 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001989998.1 1031946 R 395960 CDS YP_001989999.1 192289394 6408620 complement(1033778..1034695) 1 NC_011004.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1034695 6408620 Rpal_0966 Rhodopseudomonas palustris TIE-1 dihydrodipicolinate synthase YP_001989999.1 1033778 R 395960 CDS YP_001990000.1 192289395 6408621 complement(1034963..1035106) 1 NC_011004.1 hypothetical protein 1035106 6408621 Rpal_0967 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990000.1 1034963 R 395960 CDS YP_001990001.1 192289396 6408622 complement(1035230..1036615) 1 NC_011004.1 TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: bra:BRADO1088 membrane-bound lytic murein transglycosylase, signal peptide; lytic murein transglycosylase 1036615 6408622 Rpal_0968 Rhodopseudomonas palustris TIE-1 lytic murein transglycosylase YP_001990001.1 1035230 R 395960 CDS YP_001990002.1 192289397 6408623 1036790..1037446 1 NC_011004.1 PFAM: lysine exporter; KEGG: bja:bll7736 efflux protein; lysine exporter 1037446 6408623 Rpal_0969 Rhodopseudomonas palustris TIE-1 lysine exporter YP_001990002.1 1036790 D 395960 CDS YP_001990003.1 192289398 6408624 complement(1037463..1038215) 1 NC_011004.1 PFAM: protein of unknown function DUF81; KEGG: bja:blr7734 hypothetical protein; hypothetical protein 1038215 6408624 Rpal_0970 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990003.1 1037463 R 395960 CDS YP_001990004.1 192289399 6408626 1038757..1039341 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: mlo:mlr2419 probable transcriptional regulator; TetR family transcriptional regulator 1039341 6408626 Rpal_0972 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001990004.1 1038757 D 395960 CDS YP_001990005.1 192289400 6408627 complement(1039357..1040139) 1 NC_011004.1 TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: bja:blr7731 inositol monophosphatase family protein; histidinol-phosphate phosphatase 1040139 6408627 Rpal_0973 Rhodopseudomonas palustris TIE-1 histidinol-phosphate phosphatase YP_001990005.1 1039357 R 395960 CDS YP_001990006.1 192289401 6408628 complement(1040838..1041008) 1 NC_011004.1 PFAM: Flp/Fap pilin component; KEGG: bra:BRADO5701 Flp/Fap pilin component; Flp/Fap pilin component 1041008 6408628 Rpal_0974 Rhodopseudomonas palustris TIE-1 Flp/Fap pilin component YP_001990006.1 1040838 R 395960 CDS YP_001990007.1 192289402 6408629 complement(1041159..1042046) 1 NC_011004.1 PFAM: N-formylglutamate amidohydrolase; KEGG: bja:blr7730 hypothetical protein; N-formylglutamate amidohydrolase 1042046 6408629 Rpal_0975 Rhodopseudomonas palustris TIE-1 N-formylglutamate amidohydrolase YP_001990007.1 1041159 R 395960 CDS YP_001990008.1 192289403 6408630 1042357..1042716 1 NC_011004.1 PFAM: response regulator receiver; KEGG: nha:Nham_1143 response regulator receiver domain protein (CheY-like); response regulator receiver protein 1042716 6408630 Rpal_0976 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001990008.1 1042357 D 395960 CDS YP_001990009.1 192289404 6408632 1043108..1043233 1 NC_011004.1 KEGG: atc:AGR_pAT_739 hypothetical protein; hypothetical protein 1043233 6408632 Rpal_0977 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990009.1 1043108 D 395960 CDS YP_001990010.1 192289405 6408633 complement(1043378..1043527) 1 NC_011004.1 KEGG: bbt:BBta_1649 hypothetical protein; hypothetical protein 1043527 6408633 Rpal_0978 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990010.1 1043378 R 395960 CDS YP_001990011.1 192289406 6408634 complement(1043682..1044281) 1 NC_011004.1 stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA 1044281 6408634 Rpal_0979 Rhodopseudomonas palustris TIE-1 TrpR binding protein WrbA YP_001990011.1 1043682 R 395960 CDS YP_001990012.1 192289407 6408635 complement(1044447..1045145) 1 NC_011004.1 PFAM: pirin; KEGG: bbt:BBta_1651 pirin family protein; pirin 1045145 6408635 Rpal_0980 Rhodopseudomonas palustris TIE-1 pirin YP_001990012.1 1044447 R 395960 CDS YP_001990013.1 192289408 6408636 1045278..1046201 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll7565 transcriptional regulatory protein; LysR family transcriptional regulator 1046201 6408636 Rpal_0981 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001990013.1 1045278 D 395960 CDS YP_001990014.1 192289409 6408637 complement(1046216..1047049) 1 NC_011004.1 KEGG: bja:bll1491 hypothetical protein; hypothetical protein 1047049 6408637 Rpal_0982 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990014.1 1046216 R 395960 CDS YP_001990015.1 192289410 6408638 1047184..1047837 1 NC_011004.1 PFAM: protein of unknown function DUF179; KEGG: nha:Nham_3550 hypothetical protein; hypothetical protein 1047837 6408638 Rpal_0983 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990015.1 1047184 D 395960 CDS YP_001990016.1 192289411 6408639 complement(1048059..1050938) 1 NC_011004.1 KEGG: bja:bll1502 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1050938 6408639 Rpal_0984 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001990016.1 1048059 R 395960 CDS YP_001990017.1 192289412 6408640 complement(1051061..1052059) 1 NC_011004.1 TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bra:BRADO1103 NADPH quinone oxidoreductase; NAD(P)H quinone oxidoreductase 1052059 6408640 Rpal_0985 Rhodopseudomonas palustris TIE-1 NAD(P)H quinone oxidoreductase YP_001990017.1 1051061 R 395960 CDS YP_001990018.1 192289413 6408641 1052173..1052364 1 NC_011004.1 PFAM: protein of unknown function DUF1192; KEGG: bja:bsr1504 hypothetical protein; hypothetical protein 1052364 6408641 Rpal_0986 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990018.1 1052173 D 395960 CDS YP_001990019.1 192289414 6408642 1052785..1053294 1 NC_011004.1 PFAM: protein of unknown function DUF1465; KEGG: bbt:BBta_6944 hypothetical protein; hypothetical protein 1053294 6408642 Rpal_0987 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990019.1 1052785 D 395960 CDS YP_001990020.1 192289415 6408643 complement(1053516..1053743) 1 NC_011004.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1053743 rpmE 6408643 rpmE Rhodopseudomonas palustris TIE-1 50S ribosomal protein L31 YP_001990020.1 1053516 R 395960 CDS YP_001990021.1 192289416 6408644 1053941..1055845 1 NC_011004.1 KEGG: nwi:Nwi_2746 ABC transporter ATP-binding/permease protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter; SMART: ATPase AAA; lipid A ABC exporter family, fused ATPase and inner membrane subunits 1055845 6408644 Rpal_0989 Rhodopseudomonas palustris TIE-1 lipid A ABC exporter family, fused ATPase and inner membrane subunits YP_001990021.1 1053941 D 395960 CDS YP_001990022.1 192289417 6408645 complement(1055989..1056435) 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_3543 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1056435 6408645 Rpal_0990 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001990022.1 1055989 R 395960 CDS YP_001990023.1 192289418 6408646 complement(1056572..1057597) 1 NC_011004.1 PFAM: OmpA/MotB domain protein; KEGG: bja:bll1510 hypothetical protein; hypothetical protein 1057597 6408646 Rpal_0991 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990023.1 1056572 R 395960 CDS YP_001990024.1 192289419 6408647 complement(1057597..1058616) 1 NC_011004.1 KEGG: nha:Nham_3541 hypothetical protein; hypothetical protein 1058616 6408647 Rpal_0992 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990024.1 1057597 R 395960 CDS YP_001990025.1 192289420 6408648 1058796..1059623 1 NC_011004.1 PFAM: protein of unknown function DUF1295; KEGG: bbt:BBta_6937 membrane protein of unknown function; hypothetical protein 1059623 6408648 Rpal_0993 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990025.1 1058796 D 395960 CDS YP_001990026.1 192289421 6408649 1059620..1060645 1 NC_011004.1 PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: bra:BRADO1113 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1060645 6408649 Rpal_0994 Rhodopseudomonas palustris TIE-1 cyclopropane-fatty-acyl-phospholipid synthase YP_001990026.1 1059620 D 395960 CDS YP_001990027.1 192289422 6408650 1060928..1061122 1 NC_011004.1 hypothetical protein 1061122 6408650 Rpal_0995 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990027.1 1060928 D 395960 CDS YP_001990028.1 192289423 6408651 1061207..1061401 1 NC_011004.1 hypothetical protein 1061401 6408651 Rpal_0996 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990028.1 1061207 D 395960 CDS YP_001990029.1 192289424 6408652 complement(1061499..1061708) 1 NC_011004.1 SMART: helix-turn-helix domain protein; KEGG: xau:Xaut_0314 transcriptional regulator, XRE family; XRE family transcriptional regulator 1061708 6408652 Rpal_0997 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001990029.1 1061499 R 395960 CDS YP_001990030.1 192289425 6408653 complement(1061712..1062287) 1 NC_011004.1 KEGG: xau:Xaut_0315 hypothetical protein; hypothetical protein 1062287 6408653 Rpal_0998 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990030.1 1061712 R 395960 CDS YP_001990031.1 192289426 6408654 1062366..1062944 1 NC_011004.1 KEGG: xau:Xaut_0316 hypothetical protein; hypothetical protein 1062944 6408654 Rpal_0999 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990031.1 1062366 D 395960 CDS YP_001990032.1 192289427 6408655 complement(1063168..1063770) 1 NC_011004.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: bja:blr7630 probable decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1063770 6408655 Rpal_1000 Rhodopseudomonas palustris TIE-1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_001990032.1 1063168 R 395960 CDS YP_001990033.1 192289428 6408656 complement(1063767..1065305) 1 NC_011004.1 TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein; KEGG: bja:blr7629 hypothetical protein; UbiD family decarboxylase 1065305 6408656 Rpal_1001 Rhodopseudomonas palustris TIE-1 UbiD family decarboxylase YP_001990033.1 1063767 R 395960 CDS YP_001990034.1 192289429 6408657 1065421..1065966 1 NC_011004.1 KEGG: bja:bll7628 hypothetical protein; hypothetical protein 1065966 6408657 Rpal_1002 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990034.1 1065421 D 395960 CDS YP_001990035.1 192289430 6408658 1065970..1066947 1 NC_011004.1 PFAM: peptidase U32; KEGG: bja:bll7627 hypothetical protein; peptidase U32 1066947 6408658 Rpal_1003 Rhodopseudomonas palustris TIE-1 peptidase U32 YP_001990035.1 1065970 D 395960 CDS YP_001990036.1 192289431 6408659 1067016..1067936 1 NC_011004.1 PFAM: peptidase U32; KEGG: bja:bll7626 hypothetical protein; peptidase U32 1067936 6408659 Rpal_1004 Rhodopseudomonas palustris TIE-1 peptidase U32 YP_001990036.1 1067016 D 395960 CDS YP_001990037.1 192289432 6408660 complement(1068350..1069654) 1 NC_011004.1 KEGG: mem:Memar_2113 dipeptidyl aminopeptidase/acylaminoacyl-peptidase related protein; dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 1069654 6408660 Rpal_1005 Rhodopseudomonas palustris TIE-1 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein YP_001990037.1 1068350 R 395960 CDS YP_001990038.1 192289433 6408661 1069736..1070308 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: fre:Franean1_6626 transcriptional regulator, TetR family; TetR family transcriptional regulator 1070308 6408661 Rpal_1006 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001990038.1 1069736 D 395960 CDS YP_001990039.1 192289434 6408662 complement(1070337..1071125) 1 NC_011004.1 PFAM: inositol monophosphatase; KEGG: bbt:BBta_6932 inositol monophosphatase; inositol-phosphate phosphatase 1071125 6408662 Rpal_1007 Rhodopseudomonas palustris TIE-1 inositol-phosphate phosphatase YP_001990039.1 1070337 R 395960 CDS YP_001990040.1 192289435 6408663 complement(1071230..1072321) 1 NC_011004.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: bra:BRADO1118 beta-lactamase; Sel1 domain-containing protein repeat-containing protein 1072321 6408663 Rpal_1008 Rhodopseudomonas palustris TIE-1 Sel1 domain-containing protein repeat-containing protein YP_001990040.1 1071230 R 395960 CDS YP_001990041.1 192289436 6408664 complement(1072338..1072997) 1 NC_011004.1 PFAM: thiamine monophosphate synthase; KEGG: nha:Nham_3535 thiamine monophosphate synthase; thiamine monophosphate synthase 1072997 6408664 Rpal_1009 Rhodopseudomonas palustris TIE-1 thiamine monophosphate synthase YP_001990041.1 1072338 R 395960 CDS YP_001990042.1 192289437 6408665 complement(1073003..1074037) 1 NC_011004.1 PFAM: fructose-bisphosphate aldolase class-I; KEGG: nha:Nham_3534 fructose-bisphosphate aldolase; fructose-bisphosphate aldolase 1074037 6408665 Rpal_1010 Rhodopseudomonas palustris TIE-1 fructose-bisphosphate aldolase YP_001990042.1 1073003 R 395960 CDS YP_001990043.1 192289438 6408666 complement(1074092..1074415) 1 NC_011004.1 PFAM: PemK family protein; KEGG: psp:PSPPH_A0142 hypothetical protein; MazE family transcriptional regulator 1074415 6408666 Rpal_1011 Rhodopseudomonas palustris TIE-1 MazE family transcriptional regulator YP_001990043.1 1074092 R 395960 CDS YP_001990044.1 192289439 6408667 complement(1074412..1074696) 1 NC_011004.1 KEGG: xcv:XCVc0003 hypothetical protein; hypothetical protein 1074696 6408667 Rpal_1012 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990044.1 1074412 R 395960 CDS YP_001990045.1 192289440 6408668 complement(1074795..1075991) 1 NC_011004.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1075991 pgk 6408668 pgk Rhodopseudomonas palustris TIE-1 phosphoglycerate kinase YP_001990045.1 1074795 R 395960 CDS YP_001990046.1 192289441 6408669 complement(1076213..1077220) 1 NC_011004.1 KEGG: bra:BRADO1124 glyceraldehyde-3-phosphate dehydrogenase (GAPDH); TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 1077220 6408669 Rpal_1014 Rhodopseudomonas palustris TIE-1 glyceraldehyde-3-phosphate dehydrogenase, type I YP_001990046.1 1076213 R 395960 CDS YP_001990047.1 192289442 6408670 complement(1077436..1079421) 1 NC_011004.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1079421 6408670 Rpal_1015 Rhodopseudomonas palustris TIE-1 transketolase YP_001990047.1 1077436 R 395960 CDS YP_001990048.1 192289443 6408671 1079749..1080093 1 NC_011004.1 KEGG: nha:Nham_3530 hypothetical protein; hypothetical protein 1080093 6408671 Rpal_1016 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990048.1 1079749 D 395960 CDS YP_001990049.1 192289444 6408672 1080090..1080500 1 NC_011004.1 PFAM: protein of unknown function DUF710; KEGG: bra:BRADO1128 hypothetical protein; hypothetical protein 1080500 6408672 Rpal_1017 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990049.1 1080090 D 395960 CDS YP_001990050.1 192289445 6408673 complement(1080635..1081876) 1 NC_011004.1 PFAM: (uracil-5)-methyltransferase; KEGG: bra:BRADO2158 RNA methyltransferase; (uracil-5)-methyltransferase 1081876 6408673 Rpal_1018 Rhodopseudomonas palustris TIE-1 (uracil-5)-methyltransferase YP_001990050.1 1080635 R 395960 CDS YP_001990051.1 192289446 6408674 complement(1081923..1083347) 1 NC_011004.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bja:bll0821 multidrug efflux protein; MATE efflux family protein 1083347 6408674 Rpal_1019 Rhodopseudomonas palustris TIE-1 MATE efflux family protein YP_001990051.1 1081923 R 395960 CDS YP_001990052.1 192289447 6408675 complement(1083410..1084150) 1 NC_011004.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: nha:Nham_0777 hemolysin A; hemolysin A 1084150 6408675 Rpal_1020 Rhodopseudomonas palustris TIE-1 hemolysin A YP_001990052.1 1083410 R 395960 CDS YP_001990053.1 192289448 6408676 complement(1084153..1084716) 1 NC_011004.1 PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: bbt:BBta_2478 nucleoside 2-deoxyribosyltransferase; nucleoside 2-deoxyribosyltransferase 1084716 6408676 Rpal_1021 Rhodopseudomonas palustris TIE-1 nucleoside 2-deoxyribosyltransferase YP_001990053.1 1084153 R 395960 CDS YP_001990054.1 192289449 6408677 complement(1084939..1086864) 1 NC_011004.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1086864 6408677 Rpal_1022 Rhodopseudomonas palustris TIE-1 1-deoxy-D-xylulose-5-phosphate synthase YP_001990054.1 1084939 R 395960 CDS YP_001990055.1 192289450 6408678 complement(1087279..1087530) 1 NC_011004.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1087530 6408678 Rpal_1023 Rhodopseudomonas palustris TIE-1 exodeoxyribonuclease VII small subunit YP_001990055.1 1087279 R 395960 CDS YP_001990056.1 192289451 6408679 complement(1087613..1088542) 1 NC_011004.1 PFAM: histone deacetylase superfamily; KEGG: bja:bll2653 hypothetical protein; histone deacetylase superfamily protein 1088542 6408679 Rpal_1024 Rhodopseudomonas palustris TIE-1 histone deacetylase superfamily protein YP_001990056.1 1087613 R 395960 CDS YP_001990057.1 192289452 6408680 complement(1088648..1090330) 1 NC_011004.1 PFAM: metallophosphoesterase; 5'-nucleotidase; KEGG: bja:bll2654 5'-nucleotidase family protein; 5'-nucleotidase 1090330 6408680 Rpal_1025 Rhodopseudomonas palustris TIE-1 5'-nucleotidase YP_001990057.1 1088648 R 395960 CDS YP_001990058.1 192289453 6408681 1090550..1091026 1 NC_011004.1 KEGG: bra:BRADO3396 conserved hypothetical protein; signal peptide; hypothetical protein 1091026 6408681 Rpal_1026 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990058.1 1090550 D 395960 CDS YP_001990059.1 192289454 6408682 complement(1091065..1091859) 1 NC_011004.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bra:BRADO2169 enoyl-CoA hydratase; Enoyl-CoA hydratase/isomerase 1091859 6408682 Rpal_1027 Rhodopseudomonas palustris TIE-1 Enoyl-CoA hydratase/isomerase YP_001990059.1 1091065 R 395960 CDS YP_001990060.1 192289455 6408683 complement(1092033..1093814) 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_2498 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1093814 6408683 Rpal_1028 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001990060.1 1092033 R 395960 CDS YP_001990061.1 192289456 6408685 1094206..1096179 1 NC_011004.1 PFAM: integrase family protein; KEGG: nha:Nham_0896 hypothetical protein; integrase family protein 1096179 6408685 Rpal_1029 Rhodopseudomonas palustris TIE-1 integrase family protein YP_001990061.1 1094206 D 395960 CDS YP_001990062.1 192289457 6408686 1096397..1097671 1 NC_011004.1 PFAM: integrase family protein; KEGG: ret:RHE_CH00241 recombinase protein, phage integrase family; integrase family protein 1097671 6408686 Rpal_1030 Rhodopseudomonas palustris TIE-1 integrase family protein YP_001990062.1 1096397 D 395960 CDS YP_001990063.1 192289458 6408687 1097689..1098066 1 NC_011004.1 hypothetical protein 1098066 6408687 Rpal_1031 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990063.1 1097689 D 395960 CDS YP_001990064.1 192289459 6408688 1098059..1098727 1 NC_011004.1 hypothetical protein 1098727 6408688 Rpal_1032 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990064.1 1098059 D 395960 CDS YP_001990065.1 192289460 6408689 1098751..1099458 1 NC_011004.1 hypothetical protein 1099458 6408689 Rpal_1033 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990065.1 1098751 D 395960 CDS YP_001990066.1 192289461 6408690 1099505..1100218 1 NC_011004.1 hypothetical protein 1100218 6408690 Rpal_1034 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990066.1 1099505 D 395960 CDS YP_001990067.1 192289462 6408691 1100215..1101009 1 NC_011004.1 KEGG: net:Neut_2625 hypothetical protein; hypothetical protein 1101009 6408691 Rpal_1035 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990067.1 1100215 D 395960 CDS YP_001990068.1 192289463 6408692 1101009..1101302 1 NC_011004.1 hypothetical protein 1101302 6408692 Rpal_1036 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990068.1 1101009 D 395960 CDS YP_001990069.1 192289464 6408693 1101523..1102431 1 NC_011004.1 KEGG: bra:BRADO6401 hypothetical protein; hypothetical protein 1102431 6408693 Rpal_1037 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990069.1 1101523 D 395960 CDS YP_001990070.1 192289465 6408694 complement(1102411..1103274) 1 NC_011004.1 PFAM: IstB domain protein ATP-binding protein; SMART: ATPase AAA; KEGG: nha:Nham_3913 IstB-like ATP-binding protein; IstB domain-containing protein ATP-binding protein 1103274 6408694 Rpal_1038 Rhodopseudomonas palustris TIE-1 IstB domain-containing protein ATP-binding protein YP_001990070.1 1102411 R 395960 CDS YP_001990071.1 192289466 6408695 complement(1103274..1104764) 1 NC_011004.1 PFAM: Integrase catalytic region; KEGG: nha:Nham_3914 integrase, catalytic region; integrase catalytic subunit 1104764 6408695 Rpal_1039 Rhodopseudomonas palustris TIE-1 integrase catalytic subunit YP_001990071.1 1103274 R 395960 CDS YP_001990072.1 192289467 6408696 complement(1105025..1106854) 1 NC_011004.1 PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bbt:BBta_p0072 multicopper oxidase domain; multicopper oxidase type 3 1106854 6408696 Rpal_1040 Rhodopseudomonas palustris TIE-1 multicopper oxidase type 3 YP_001990072.1 1105025 R 395960 CDS YP_001990073.1 192289468 6408698 1107714..1110155 1 NC_011004.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_p0125 copper-translocating P-type ATPase; ATPase P 1110155 6408698 Rpal_1042 Rhodopseudomonas palustris TIE-1 ATPase P YP_001990073.1 1107714 D 395960 CDS YP_001990074.1 192289469 6408700 complement(join(1110610..1111212,1111212..1111556)) 1 NC_011004.1 KEGG: cak:Caul_5240 ISSpo6, transposase orf A; Transposase and inactivated derivatives-like protein 1111556 6408700 Rpal_1044 Rhodopseudomonas palustris TIE-1 Transposase and inactivated derivatives-like protein YP_001990074.1 1110610 R 395960 CDS YP_001990075.1 192289470 6408701 complement(1112164..1115313) 1 NC_011004.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: psa:PST_3361 heavy metal efflux pump CzcA; CzcA family heavy metal efflux pump 1115313 6408701 Rpal_1045 Rhodopseudomonas palustris TIE-1 CzcA family heavy metal efflux pump YP_001990075.1 1112164 R 395960 CDS YP_001990076.1 192289471 6408702 complement(1115328..1116626) 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: sfu:Sfum_2436 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit 1116626 6408702 Rpal_1046 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001990076.1 1115328 R 395960 CDS YP_001990077.1 192289472 6408703 complement(1116652..1118127) 1 NC_011004.1 PFAM: outer membrane efflux protein; KEGG: mxa:MXAN_0990 cation efflux system protein CusC; outer membrane efflux protein 1118127 6408703 Rpal_1047 Rhodopseudomonas palustris TIE-1 outer membrane efflux protein YP_001990077.1 1116652 R 395960 CDS YP_001990078.1 192289473 6408704 complement(1118653..1119114) 1 NC_011004.1 PFAM: protein of unknown function DUF411; KEGG: bbt:BBta_p0065 exported protein of unknown function; hypothetical protein 1119114 6408704 Rpal_1048 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990078.1 1118653 R 395960 CDS YP_001990079.1 192289474 6408705 complement(1119323..1120195) 1 NC_011004.1 PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: gox:GOX2175 ATP synthase gamma chain; H+transporting two-sector ATPase subunit gamma 1120195 6408705 Rpal_1049 Rhodopseudomonas palustris TIE-1 H+transporting two-sector ATPase subunit gamma YP_001990079.1 1119323 R 395960 CDS YP_001990080.1 192289475 6408706 complement(1120192..1121745) 1 NC_011004.1 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1121745 6408706 Rpal_1050 Rhodopseudomonas palustris TIE-1 F0F1 ATP synthase subunit alpha YP_001990080.1 1120192 R 395960 CDS YP_001990081.1 192289476 6408707 complement(1121726..1122472) 1 NC_011004.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: gox:GOX2173 ATP synthase subunit B; H+transporting two-sector ATPase subunit B/B' 1122472 6408707 Rpal_1051 Rhodopseudomonas palustris TIE-1 H+transporting two-sector ATPase subunit B/B' YP_001990081.1 1121726 R 395960 CDS YP_001990082.1 192289477 6408708 complement(1122477..1122722) 1 NC_011004.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 1122722 6408708 Rpal_1052 Rhodopseudomonas palustris TIE-1 F0F1 ATP synthase subunit C YP_001990082.1 1122477 R 395960 CDS YP_001990083.1 192289478 6408709 complement(1122719..1123417) 1 NC_011004.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 1123417 6408709 Rpal_1053 Rhodopseudomonas palustris TIE-1 F0F1 ATP synthase subunit A YP_001990083.1 1122719 R 395960 CDS YP_001990084.1 192289479 6408710 complement(1123414..1123719) 1 NC_011004.1 KEGG: gox:GOX2170 transmembrane protein; hypothetical protein 1123719 6408710 Rpal_1054 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990084.1 1123414 R 395960 CDS YP_001990085.1 192289480 6408711 complement(1123716..1124033) 1 NC_011004.1 TIGRFAM: F0F1-ATPase subunit; PFAM: F0F1-ATPase subunit KEGG: bxe:Bxe_C0047 ATP synthesis-related protein; F0F1-ATPase subunit 1124033 6408711 Rpal_1055 Rhodopseudomonas palustris TIE-1 F0F1-ATPase subunit YP_001990085.1 1123716 R 395960 CDS YP_001990086.1 192289481 6408712 complement(1124030..1124449) 1 NC_011004.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit epsilon 1124449 6408712 Rpal_1056 Rhodopseudomonas palustris TIE-1 F0F1 ATP synthase subunit epsilon YP_001990086.1 1124030 R 395960 CDS YP_001990087.1 192289482 6408713 complement(1124446..1125870) 1 NC_011004.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1125870 6408713 Rpal_1057 Rhodopseudomonas palustris TIE-1 F0F1 ATP synthase subunit beta YP_001990087.1 1124446 R 395960 CDS YP_001990088.1 192289483 6408714 1126447..1126995 1 NC_011004.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1126995 6408714 Rpal_1058 Rhodopseudomonas palustris TIE-1 RNA polymerase sigma factor YP_001990088.1 1126447 D 395960 CDS YP_001990089.1 192289484 6408715 1126992..1127630 1 NC_011004.1 PFAM: protein of unknown function DUF1109; KEGG: bja:blr4929 hypothetical protein; hypothetical protein 1127630 6408715 Rpal_1059 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990089.1 1126992 D 395960 CDS YP_001990090.1 192289485 6408716 1127760..1127996 1 NC_011004.1 hypothetical protein 1127996 6408716 Rpal_1060 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990090.1 1127760 D 395960 CDS YP_001990091.1 192289486 6408718 1128648..1128911 1 NC_011004.1 KEGG: bbt:BBta_p0110 exported protein of unknown function; hypothetical protein 1128911 6408718 Rpal_1062 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990091.1 1128648 D 395960 CDS YP_001990092.1 192289487 6408720 complement(1130069..1131289) 1 NC_011004.1 KEGG: bbt:BBta_p0145 membrane protein of unknown function; hypothetical protein 1131289 6408720 Rpal_1064 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990092.1 1130069 R 395960 CDS YP_001990093.1 192289488 6408722 1133573..1133953 1 NC_011004.1 KEGG: bbt:BBta_3429 exported protein of unknown function; hypothetical protein 1133953 6408722 Rpal_1066 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990093.1 1133573 D 395960 CDS YP_001990094.1 192289489 6408724 1134574..1135125 1 NC_011004.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1135125 6408724 Rpal_1068 Rhodopseudomonas palustris TIE-1 RNA polymerase sigma factor YP_001990094.1 1134574 D 395960 CDS YP_001990095.1 192289490 6408725 1135122..1135760 1 NC_011004.1 PFAM: protein of unknown function DUF1109; KEGG: bja:blr4929 hypothetical protein; hypothetical protein 1135760 6408725 Rpal_1069 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990095.1 1135122 D 395960 CDS YP_001990096.1 192289491 6408726 1135900..1136130 1 NC_011004.1 hypothetical protein 1136130 6408726 Rpal_1070 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990096.1 1135900 D 395960 CDS YP_001990097.1 192289492 6408727 1136163..1136405 1 NC_011004.1 KEGG: nha:Nham_1942 hypothetical protein; hypothetical protein 1136405 6408727 Rpal_1071 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990097.1 1136163 D 395960 CDS YP_001990098.1 192289493 6408728 1136895..1139162 1 NC_011004.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_p0056 copper-transporting P-type ATPase; ATPase P 1139162 6408728 Rpal_1072 Rhodopseudomonas palustris TIE-1 ATPase P YP_001990098.1 1136895 D 395960 CDS YP_001990099.1 192289494 6408729 1139184..1139429 1 NC_011004.1 KEGG: pna:Pnap_1254 hypothetical protein; hypothetical protein 1139429 6408729 Rpal_1073 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990099.1 1139184 D 395960 CDS YP_001990100.1 192289495 6408730 complement(1139704..1140531) 1 NC_011004.1 PFAM: transposase IS4 family protein; KEGG: gox:GOX2731 transposase (class IV); transposase IS4 family protein 1140531 6408730 Rpal_1074 Rhodopseudomonas palustris TIE-1 transposase IS4 family protein YP_001990100.1 1139704 R 395960 CDS YP_001990101.1 192289496 6408733 complement(1142470..1143300) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bbt:BBta_p0149 hypothetical protein; hypothetical protein 1143300 6408733 Rpal_1077 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990101.1 1142470 R 395960 CDS YP_001990102.1 192289497 6408734 1143527..1144891 1 NC_011004.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bbt:BBta_p0148 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 1144891 6408734 Rpal_1078 Rhodopseudomonas palustris TIE-1 beta-lactamase domain-containing protein YP_001990102.1 1143527 D 395960 CDS YP_001990103.1 192289498 6408735 complement(1144951..1145205) 1 NC_011004.1 KEGG: bbt:BBta_p0110 exported protein of unknown function; hypothetical protein 1145205 6408735 Rpal_1079 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990103.1 1144951 R 395960 CDS YP_001990104.1 192289499 6408736 1145535..1145864 1 NC_011004.1 KEGG: bbt:BBta_p0147 exported protein of unknown function; hypothetical protein 1145864 6408736 Rpal_1080 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990104.1 1145535 D 395960 CDS YP_001990105.1 192289500 6408738 1147384..1147797 1 NC_011004.1 PFAM: protein of unknown function DUF1622; KEGG: bbt:BBta_p0144 membrane protein of unknown function; hypothetical protein 1147797 6408738 Rpal_1082 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990105.1 1147384 D 395960 CDS YP_001990106.1 192289501 6408739 complement(1147782..1149566) 1 NC_011004.1 KEGG: bbt:BBta_p0197 hypothetical protein; hypothetical protein 1149566 6408739 Rpal_1083 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990106.1 1147782 R 395960 CDS YP_001990107.1 192289502 6408740 1149739..1150434 1 NC_011004.1 PFAM: protein of unknown function DUF1520; KEGG: bja:bll4817 hypothetical protein; hypothetical protein 1150434 6408740 Rpal_1084 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990107.1 1149739 D 395960 CDS YP_001990108.1 192289503 6408741 1150461..1152569 1 NC_011004.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding protein; KEGG: bja:bll4816 hypothetical protein; oxidoreductase FAD-binding protein 1152569 6408741 Rpal_1085 Rhodopseudomonas palustris TIE-1 oxidoreductase FAD-binding protein YP_001990108.1 1150461 D 395960 CDS YP_001990109.1 192289504 6408742 1152571..1153266 1 NC_011004.1 KEGG: bja:bll4815 hypothetical protein; hypothetical protein 1153266 6408742 Rpal_1086 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990109.1 1152571 D 395960 CDS YP_001990110.1 192289505 6408743 1153263..1154039 1 NC_011004.1 KEGG: bja:bll4814 hypothetical protein; hypothetical protein 1154039 6408743 Rpal_1087 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990110.1 1153263 D 395960 CDS YP_001990111.1 192289506 6408744 complement(1155293..1155670) 1 NC_011004.1 hypothetical protein 1155670 6408744 Rpal_1088 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990111.1 1155293 R 395960 CDS YP_001990112.1 192289507 6408745 1155910..1156200 1 NC_011004.1 KEGG: nha:Nham_4383 hypothetical protein; hypothetical protein 1156200 6408745 Rpal_1089 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990112.1 1155910 D 395960 CDS YP_001990113.1 192289508 6408746 1156204..1157655 1 NC_011004.1 KEGG: nha:Nham_4633 outer membrane efflux protein; outer membrane efflux protein 1157655 6408746 Rpal_1090 Rhodopseudomonas palustris TIE-1 outer membrane efflux protein YP_001990113.1 1156204 D 395960 CDS YP_001990114.1 192289509 6408747 1157668..1159050 1 NC_011004.1 PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bbt:BBta_p0117 twin-arginine translocation pathway signal; copper resistance protein (CopA); multicopper oxidase type 3 1159050 6408747 Rpal_1091 Rhodopseudomonas palustris TIE-1 multicopper oxidase type 3 YP_001990114.1 1157668 D 395960 CDS YP_001990115.1 192289510 6408748 1159047..1159544 1 NC_011004.1 PFAM: blue (type 1) copper domain protein; KEGG: xau:Xaut_4902 blue (type 1) copper domain protein; blue (type 1) copper domain-containing protein 1159544 6408748 Rpal_1092 Rhodopseudomonas palustris TIE-1 blue (type 1) copper domain-containing protein YP_001990115.1 1159047 D 395960 CDS YP_001990116.1 192289511 6408749 1159574..1159879 1 NC_011004.1 KEGG: bbt:BBta_p0116 hypothetical protein; hypothetical protein 1159879 6408749 Rpal_1093 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990116.1 1159574 D 395960 CDS YP_001990117.1 192289512 6408750 1159954..1160619 1 NC_011004.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mes:Meso_3863 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 1160619 6408750 Rpal_1094 Rhodopseudomonas palustris TIE-1 ECF subfamily RNA polymerase sigma-24 subunit YP_001990117.1 1159954 D 395960 CDS YP_001990118.1 192289513 6408751 1160849..1161877 1 NC_011004.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: nha:Nham_3900 transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein 1161877 6408751 Rpal_1095 Rhodopseudomonas palustris TIE-1 transposase IS116/IS110/IS902 family protein YP_001990118.1 1160849 D 395960 CDS YP_001990119.1 192289514 6408752 complement(1162499..1162681) 1 NC_011004.1 KEGG: bra:BRADO2812 hypothetical protein; hypothetical protein 1162681 6408752 Rpal_1096 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990119.1 1162499 R 395960 CDS YP_001990120.1 192289515 6408753 1163192..1164082 1 NC_011004.1 KEGG: bbt:BBta_1404 hypothetical protein; hypothetical protein 1164082 6408753 Rpal_1097 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990120.1 1163192 D 395960 CDS YP_001990121.1 192289516 6408754 1164063..1164425 1 NC_011004.1 KEGG: lpp:lpp1217 hypothetical protein; hypothetical protein 1164425 6408754 Rpal_1098 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990121.1 1164063 D 395960 CDS YP_001990122.1 192289517 6408755 1164974..1166158 1 NC_011004.1 KEGG: bbt:BBta_5400 membrane protein of unknown function with acyltransferase family protein domain; hypothetical protein 1166158 6408755 Rpal_1099 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990122.1 1164974 D 395960 CDS YP_001990123.1 192289518 6408756 complement(1166311..1166775) 1 NC_011004.1 hypothetical protein 1166775 6408756 Rpal_1100 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990123.1 1166311 R 395960 CDS YP_001990124.1 192289519 6408757 complement(1166772..1167986) 1 NC_011004.1 hypothetical protein 1167986 6408757 Rpal_1101 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990124.1 1166772 R 395960 CDS YP_001990125.1 192289520 6408758 complement(1168088..1168858) 1 NC_011004.1 KEGG: mab:MAB_3233 hypothetical protein; hypothetical protein 1168858 6408758 Rpal_1102 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990125.1 1168088 R 395960 CDS YP_001990126.1 192289521 6408759 complement(1169446..1169991) 1 NC_011004.1 KEGG: bbt:BBta_p0070 cytochrome C class I protein; cytochrome C class I protein 1169991 6408759 Rpal_1103 Rhodopseudomonas palustris TIE-1 cytochrome C class I protein YP_001990126.1 1169446 R 395960 CDS YP_001990127.1 192289522 6408760 complement(1170221..1171399) 1 NC_011004.1 KEGG: bbt:BBta_p0208 membrane protein of unknown function; hypothetical protein 1171399 6408760 Rpal_1104 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990127.1 1170221 R 395960 CDS YP_001990128.1 192289523 6408761 complement(1171598..1171765) 1 NC_011004.1 hypothetical protein 1171765 6408761 Rpal_1105 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990128.1 1171598 R 395960 CDS YP_001990129.1 192289524 6408762 complement(1172683..1174284) 1 NC_011004.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dol:Dole_0828 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 1174284 6408762 Rpal_1106 Rhodopseudomonas palustris TIE-1 filamentation induced by cAMP protein fic YP_001990129.1 1172683 R 395960 CDS YP_001990130.1 192289525 6408764 1176314..1177042 1 NC_011004.1 PFAM: IstB domain protein ATP-binding protein; SMART: ATPase AAA; KEGG: bja:bll8199 transposase; IstB domain-containing protein ATP-binding protein 1177042 6408764 Rpal_1108 Rhodopseudomonas palustris TIE-1 IstB domain-containing protein ATP-binding protein YP_001990130.1 1176314 D 395960 CDS YP_001990131.1 192289526 6408767 complement(1178947..1179303) 1 NC_011004.1 PFAM: IS66 Orf2 family protein; KEGG: azc:AZC_1284 transposase; IS66 Orf2 family protein 1179303 6408767 Rpal_1111 Rhodopseudomonas palustris TIE-1 IS66 Orf2 family protein YP_001990131.1 1178947 R 395960 CDS YP_001990132.1 192289527 6408768 complement(1179300..1179749) 1 NC_011004.1 PFAM: transposase IS3/IS911 family protein; KEGG: nha:Nham_3008 transposase IS3/IS911; transposase IS3/IS911 family protein 1179749 6408768 Rpal_1112 Rhodopseudomonas palustris TIE-1 transposase IS3/IS911 family protein YP_001990132.1 1179300 R 395960 CDS YP_001990133.1 192289528 6408770 complement(1180059..1183502) 1 NC_011004.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mgm:Mmc1_1385 TPR repeat-containing protein; hypothetical protein 1183502 6408770 Rpal_1114 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990133.1 1180059 R 395960 CDS YP_001990134.1 192289529 6408772 complement(1184889..1185056) 1 NC_011004.1 KEGG: nha:Nham_1982 hypothetical protein; hypothetical protein 1185056 6408772 Rpal_1116 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990134.1 1184889 R 395960 CDS YP_001990135.1 192289530 6408773 complement(1185058..1185300) 1 NC_011004.1 KEGG: nha:Nham_1357 hypothetical protein; hypothetical protein 1185300 6408773 Rpal_1117 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990135.1 1185058 R 395960 CDS YP_001990136.1 192289531 6408774 complement(1185251..1185577) 1 NC_011004.1 hypothetical protein 1185577 6408774 Rpal_1118 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990136.1 1185251 R 395960 CDS YP_001990137.1 192289532 6408775 1185879..1186073 1 NC_011004.1 KEGG: nha:Nham_1356 hypothetical protein; hypothetical protein 1186073 6408775 Rpal_1119 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990137.1 1185879 D 395960 CDS YP_001990138.1 192289533 6408776 1186082..1186660 1 NC_011004.1 hypothetical protein 1186660 6408776 Rpal_1120 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990138.1 1186082 D 395960 CDS YP_001990139.1 192289534 6408777 1186657..1187427 1 NC_011004.1 KEGG: gsu:GSU2110 hypothetical protein; hypothetical protein 1187427 6408777 Rpal_1121 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990139.1 1186657 D 395960 CDS YP_001990140.1 192289535 6408778 1187424..1187999 1 NC_011004.1 KEGG: gsu:GSU2109 hypothetical protein; hypothetical protein 1187999 6408778 Rpal_1122 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990140.1 1187424 D 395960 CDS YP_001990141.1 192289536 6408779 1188010..1191543 1 NC_011004.1 KEGG: gsu:GSU2108 hypothetical protein; hypothetical protein 1191543 6408779 Rpal_1123 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990141.1 1188010 D 395960 CDS YP_001990142.1 192289537 6408780 1191554..1195534 1 NC_011004.1 KEGG: gsu:GSU2107 hypothetical protein; hypothetical protein 1195534 6408780 Rpal_1124 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990142.1 1191554 D 395960 CDS YP_001990143.1 192289538 6408781 1195540..1198110 1 NC_011004.1 PFAM: PglZ domain protein; KEGG: gsu:GSU2106 hypothetical protein; PglZ domain-containing protein 1198110 6408781 Rpal_1125 Rhodopseudomonas palustris TIE-1 PglZ domain-containing protein YP_001990143.1 1195540 D 395960 CDS YP_001990144.1 192289539 6408782 1198114..1200150 1 NC_011004.1 KEGG: gsu:GSU2105 hypothetical protein; hypothetical protein 1200150 6408782 Rpal_1126 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990144.1 1198114 D 395960 CDS YP_001990145.1 192289540 6408783 1200150..1201118 1 NC_011004.1 KEGG: rha:RHA1_ro08741 hypothetical protein; hypothetical protein 1201118 6408783 Rpal_1127 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990145.1 1200150 D 395960 CDS YP_001990146.1 192289541 6408784 complement(1201130..1201933) 1 NC_011004.1 KEGG: xcb:XC_2667 chromosome segregation protein; hypothetical protein 1201933 6408784 Rpal_1128 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990146.1 1201130 R 395960 CDS YP_001990147.1 192289542 6408785 complement(1201926..1203074) 1 NC_011004.1 hypothetical protein 1203074 6408785 Rpal_1129 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990147.1 1201926 R 395960 CDS YP_001990148.1 192289543 6408786 complement(1203053..1203415) 1 NC_011004.1 hypothetical protein 1203415 6408786 Rpal_1130 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990148.1 1203053 R 395960 CDS YP_001990149.1 192289544 6408787 complement(1203420..1203986) 1 NC_011004.1 hypothetical protein 1203986 6408787 Rpal_1131 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990149.1 1203420 R 395960 CDS YP_001990150.1 192289545 6408789 1204534..1204983 1 NC_011004.1 KEGG: bbt:BBta_3431 hypothetical protein; hypothetical protein 1204983 6408789 Rpal_1133 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990150.1 1204534 D 395960 CDS YP_001990151.1 192289546 6408790 1204986..1205711 1 NC_011004.1 PFAM: protein of unknown function DUF159; KEGG: bbt:BBta_3432 hypothetical protein; hypothetical protein 1205711 6408790 Rpal_1134 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990151.1 1204986 D 395960 CDS YP_001990152.1 192289547 6408791 1205849..1206736 1 NC_011004.1 hypothetical protein 1206736 6408791 Rpal_1135 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990152.1 1205849 D 395960 CDS YP_001990153.1 192289548 6408792 1206736..1207035 1 NC_011004.1 KEGG: pna:Pnap_4679 hypothetical protein; hypothetical protein 1207035 6408792 Rpal_1136 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990153.1 1206736 D 395960 CDS YP_001990154.1 192289549 6408793 1207067..1207864 1 NC_011004.1 KEGG: reh:H16_B0149 hypothetical protein; hypothetical protein 1207864 6408793 Rpal_1137 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990154.1 1207067 D 395960 CDS YP_001990155.1 192289550 6408794 1208034..1208864 1 NC_011004.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1208864 6408794 Rpal_1138 Rhodopseudomonas palustris TIE-1 DNA polymerase III subunit epsilon YP_001990155.1 1208034 D 395960 CDS YP_001990156.1 192289551 6408795 complement(1208874..1209818) 1 NC_011004.1 hypothetical protein 1209818 6408795 Rpal_1139 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990156.1 1208874 R 395960 CDS YP_001990157.1 192289552 6408796 1210180..1211601 1 NC_011004.1 hypothetical protein 1211601 6408796 Rpal_1140 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990157.1 1210180 D 395960 CDS YP_001990158.1 192289553 6408797 1211795..1212379 1 NC_011004.1 hypothetical protein 1212379 6408797 Rpal_1141 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990158.1 1211795 D 395960 CDS YP_001990159.1 192289554 6408798 1212385..1213146 1 NC_011004.1 KEGG: oan:Oant_1849 hypothetical protein; hypothetical protein 1213146 6408798 Rpal_1142 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990159.1 1212385 D 395960 CDS YP_001990160.1 192289555 6408799 complement(1213175..1213672) 1 NC_011004.1 hypothetical protein 1213672 6408799 Rpal_1143 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990160.1 1213175 R 395960 CDS YP_001990161.1 192289556 6408801 complement(1214422..1215051) 1 NC_011004.1 KEGG: ade:Adeh_0499 hypothetical protein; hypothetical protein 1215051 6408801 Rpal_1145 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990161.1 1214422 R 395960 CDS YP_001990162.1 192289557 6408802 1215361..1215555 1 NC_011004.1 hypothetical protein 1215555 6408802 Rpal_1146 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990162.1 1215361 D 395960 CDS YP_001990163.1 192289558 6408803 1215731..1216693 1 NC_011004.1 KEGG: bja:bll8084 hypothetical protein; hypothetical protein 1216693 6408803 Rpal_1147 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990163.1 1215731 D 395960 CDS YP_001990164.1 192289559 6408804 1216690..1217358 1 NC_011004.1 KEGG: nha:Nham_3778 hypothetical protein; hypothetical protein 1217358 6408804 Rpal_1148 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990164.1 1216690 D 395960 CDS YP_001990165.1 192289560 6408805 1217355..1217561 1 NC_011004.1 KEGG: nha:Nham_3779 metallophosphoesterase; metallophosphoesterase 1217561 6408805 Rpal_1149 Rhodopseudomonas palustris TIE-1 metallophosphoesterase YP_001990165.1 1217355 D 395960 CDS YP_001990166.1 192289561 6408806 1217551..1219122 1 NC_011004.1 PFAM: ATPase AAA; KEGG: nha:Nham_3781 ATPase AAA; ATPase AAA 1219122 6408806 Rpal_1150 Rhodopseudomonas palustris TIE-1 ATPase AAA YP_001990166.1 1217551 D 395960 CDS YP_001990167.1 192289562 6408808 1221959..1222960 1 NC_011004.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: bbt:BBta_1994 uptake hydrogenase accessory; NADH ubiquinone oxidoreductase 20 kDa subunit 1222960 6408808 Rpal_1152 Rhodopseudomonas palustris TIE-1 NADH ubiquinone oxidoreductase 20 kDa subunit YP_001990167.1 1221959 D 395960 CDS YP_001990168.1 192289563 6408809 1222957..1224402 1 NC_011004.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: bbt:BBta_1995 uptake hydrogenase accessory; nickel-dependent hydrogenase large subunit 1224402 6408809 Rpal_1153 Rhodopseudomonas palustris TIE-1 nickel-dependent hydrogenase large subunit YP_001990168.1 1222957 D 395960 CDS YP_001990169.1 192289564 6408810 1224638..1225750 1 NC_011004.1 KEGG: bja:bll6942 uptake hydrogenase precursor; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein; hydrogenase (NiFe) small subunit HydA 1225750 6408810 Rpal_1154 Rhodopseudomonas palustris TIE-1 hydrogenase (NiFe) small subunit HydA YP_001990169.1 1224638 D 395960 CDS YP_001990170.1 192289565 6408811 1225769..1227562 1 NC_011004.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: bbt:BBta_1997 uptake hydrogenase large subunit precursor; nickel-dependent hydrogenase large subunit 1227562 6408811 Rpal_1155 Rhodopseudomonas palustris TIE-1 nickel-dependent hydrogenase large subunit YP_001990170.1 1225769 D 395960 CDS YP_001990171.1 192289566 6408812 1227579..1228307 1 NC_011004.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: bja:blr6947 probable Ni/Fe-hydrogenase B-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 1228307 6408812 Rpal_1156 Rhodopseudomonas palustris TIE-1 Ni/Fe-hydrogenase, b-type cytochrome subunit YP_001990171.1 1227579 D 395960 CDS YP_001990172.1 192289567 6408813 1228435..1229022 1 NC_011004.1 TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: bja:bll6939 HupD protein; hydrogenase expression/formation protein 1229022 6408813 Rpal_1157 Rhodopseudomonas palustris TIE-1 hydrogenase expression/formation protein YP_001990172.1 1228435 D 395960 CDS YP_001990173.1 192289568 6408814 1229036..1229629 1 NC_011004.1 PFAM: HupE/UreJ protein; KEGG: psb:Psyr_4454 HupE/UreJ protein; HupE/UreJ protein 1229629 6408814 Rpal_1158 Rhodopseudomonas palustris TIE-1 HupE/UreJ protein YP_001990173.1 1229036 D 395960 CDS YP_001990174.1 192289569 6408815 1229651..1229953 1 NC_011004.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: bja:bsl6938 hydrogenase expression/formation protein; hydrogenase assembly chaperone HypC/HupF 1229953 6408815 Rpal_1159 Rhodopseudomonas palustris TIE-1 hydrogenase assembly chaperone HypC/HupF YP_001990174.1 1229651 D 395960 CDS YP_001990175.1 192289570 6408816 1230174..1230575 1 NC_011004.1 PFAM: hydrogenase-1 expression HyaE; KEGG: bra:BRADO1689 hydrogenase expression/formation protein HupG; hydrogenase-1 expression HyaE 1230575 6408816 Rpal_1160 Rhodopseudomonas palustris TIE-1 hydrogenase-1 expression HyaE YP_001990175.1 1230174 D 395960 CDS YP_001990176.1 192289571 6408817 1230572..1231438 1 NC_011004.1 PFAM: HupH hydrogenase expression protein; KEGG: bja:bll6936 HupH protein; HupH hydrogenase expression protein 1231438 6408817 Rpal_1161 Rhodopseudomonas palustris TIE-1 HupH hydrogenase expression protein YP_001990176.1 1230572 D 395960 CDS YP_001990177.1 192289572 6408818 1231435..1231647 1 NC_011004.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: azo:azo3796 probable rubredoxin protein; rubredoxin-type Fe(Cys)4 protein 1231647 6408818 Rpal_1162 Rhodopseudomonas palustris TIE-1 rubredoxin-type Fe(Cys)4 protein YP_001990177.1 1231435 D 395960 CDS YP_001990178.1 192289573 6408819 1231637..1232161 1 NC_011004.1 KEGG: bja:bll6934 HupJ protein; HupJ protein 1232161 6408819 Rpal_1163 Rhodopseudomonas palustris TIE-1 HupJ protein YP_001990178.1 1231637 D 395960 CDS YP_001990179.1 192289574 6408820 1232158..1233267 1 NC_011004.1 KEGG: bbt:BBta_2005 hydrogenase expression/formation; hydrogenase expression/formation 1233267 6408820 Rpal_1164 Rhodopseudomonas palustris TIE-1 hydrogenase expression/formation YP_001990179.1 1232158 D 395960 CDS YP_001990180.1 192289575 6408821 1233260..1233601 1 NC_011004.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: bja:bll6932 HypA protein; hydrogenase nickel incorporation protein HypA 1233601 6408821 Rpal_1165 Rhodopseudomonas palustris TIE-1 hydrogenase nickel incorporation protein HypA YP_001990180.1 1233260 D 395960 CDS YP_001990181.1 192289576 6408822 1233601..1234557 1 NC_011004.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: bbt:BBta_2007 hydrogenase nickel incorporation; hydrogenase nickel incorporation protein HypB 1234557 6408822 Rpal_1166 Rhodopseudomonas palustris TIE-1 hydrogenase nickel incorporation protein HypB YP_001990181.1 1233601 D 395960 CDS YP_001990182.1 192289577 6408823 1234562..1236835 1 NC_011004.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: bbt:BBta_2008 carbamoyl phosphate phosphatase, (NiFe) hydrogenase maturation protein; (NiFe) hydrogenase maturation protein HypF 1236835 6408823 Rpal_1167 Rhodopseudomonas palustris TIE-1 (NiFe) hydrogenase maturation protein HypF YP_001990182.1 1234562 D 395960 CDS YP_001990183.1 192289578 6408824 1236835..1237068 1 NC_011004.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: bja:bsl6929 hydrogenase expression/formation protein; hydrogenase assembly chaperone HypC/HupF 1237068 6408824 Rpal_1168 Rhodopseudomonas palustris TIE-1 hydrogenase assembly chaperone HypC/HupF YP_001990183.1 1236835 D 395960 CDS YP_001990184.1 192289579 6408825 1237065..1238207 1 NC_011004.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: bbt:BBta_2010 hydrogenase expression/formation; hydrogenase expression/formation protein HypD 1238207 6408825 Rpal_1169 Rhodopseudomonas palustris TIE-1 hydrogenase expression/formation protein HypD YP_001990184.1 1237065 D 395960 CDS YP_001990185.1 192289580 6408826 1238204..1239250 1 NC_011004.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: bbt:BBta_2011 hydrogenase maturation; hydrogenase expression/formation protein HypE 1239250 6408826 Rpal_1170 Rhodopseudomonas palustris TIE-1 hydrogenase expression/formation protein HypE YP_001990185.1 1238204 D 395960 CDS YP_001990186.1 192289581 6408827 1239291..1240739 1 NC_011004.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; SMART: ATPase AAA; KEGG: bra:BRADO1701 two component sigma-54-dependent hydrogenase transcriptional regulator, fis family; Fis family transcriptional regulator 1240739 6408827 Rpal_1171 Rhodopseudomonas palustris TIE-1 Fis family transcriptional regulator YP_001990186.1 1239291 D 395960 CDS YP_001990187.1 192289582 6408828 1240729..1242081 1 NC_011004.1 KEGG: bja:bll6924 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 1242081 6408828 Rpal_1172 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor signal transduction histidine kinase YP_001990187.1 1240729 D 395960 CDS YP_001990188.1 192289583 6408829 1242187..1244574 1 NC_011004.1 KEGG: bja:blr5269 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 1244574 6408829 Rpal_1173 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor hybrid histidine kinase YP_001990188.1 1242187 D 395960 CDS YP_001990189.1 192289584 6408830 complement(1244598..1245389) 1 NC_011004.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bra:BRADO6658 transcriptional regulator (PcaR-like), IclR family; IclR family transcriptional regulator 1245389 6408830 Rpal_1174 Rhodopseudomonas palustris TIE-1 IclR family transcriptional regulator YP_001990189.1 1244598 R 395960 CDS YP_001990190.1 192289585 6408831 1245750..1247108 1 NC_011004.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bja:bll1070 probable dioxygenase; phthalate 4,5-dioxygenase 1247108 6408831 Rpal_1175 Rhodopseudomonas palustris TIE-1 phthalate 4,5-dioxygenase YP_001990190.1 1245750 D 395960 CDS YP_001990191.1 192289586 6408832 1247105..1248565 1 NC_011004.1 PFAM: glutamine synthetase catalytic region; KEGG: bja:bll1069 probable glutamine synthetase; glutamine synthetase 1248565 6408832 Rpal_1176 Rhodopseudomonas palustris TIE-1 glutamine synthetase YP_001990191.1 1247105 D 395960 CDS YP_001990192.1 192289587 6408833 1248612..1249784 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: rle:RL3906 solute-binding component of ABC transporter; extracellular ligand-binding receptor 1249784 6408833 Rpal_1177 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001990192.1 1248612 D 395960 CDS YP_001990193.1 192289588 6408834 1249996..1250862 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bcs:BCAN_B0649 hypothetical protein; inner-membrane translocator 1250862 6408834 Rpal_1178 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001990193.1 1249996 D 395960 CDS YP_001990194.1 192289589 6408835 1250865..1251863 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: rle:RL3908 transmembrane component of ABC transporter; inner-membrane translocator 1251863 6408835 Rpal_1179 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001990194.1 1250865 D 395960 CDS YP_001990195.1 192289590 6408836 1251860..1252624 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sme:SMb20785 branched-chain amino acid uptake ABC transporter ATP-binding protein; ABC transporter 1252624 6408836 Rpal_1180 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990195.1 1251860 D 395960 CDS YP_001990196.1 192289591 6408837 1252605..1253318 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH03449 probable branched-chain amino acid ABC transporter ATP-binding protein; ABC transporter 1253318 6408837 Rpal_1181 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990196.1 1252605 D 395960 CDS YP_001990197.1 192289592 6408838 complement(1253332..1255872) 1 NC_011004.1 PFAM: response regulator receiver; GAF domain protein; HWE histidine kinase; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: atc:AGR_C_3927 hypothetical protein; response regulator receiver modulated GAF sensor protein 1255872 6408838 Rpal_1182 Rhodopseudomonas palustris TIE-1 response regulator receiver modulated GAF sensor protein YP_001990197.1 1253332 R 395960 CDS YP_001990198.1 192289593 6408839 1256130..1256873 1 NC_011004.1 SMART: regulatory protein Crp; KEGG: bja:blr0536 transcriptional regulatory protein; Crp/Fnr family transcriptional regulator 1256873 6408839 Rpal_1183 Rhodopseudomonas palustris TIE-1 Crp/Fnr family transcriptional regulator YP_001990198.1 1256130 D 395960 CDS YP_001990199.1 192289594 6408840 complement(1256895..1257626) 1 NC_011004.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bbt:BBta_6056 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator 1257626 6408840 Rpal_1184 Rhodopseudomonas palustris TIE-1 Crp/Fnr family transcriptional regulator YP_001990199.1 1256895 R 395960 CDS YP_001990200.1 192289595 6408841 1257793..1258368 1 NC_011004.1 PFAM: phosphoglycerate mutase; KEGG: bja:bll327 probable cobalamin synthesis protein; phosphoglycerate mutase 1258368 6408841 Rpal_1185 Rhodopseudomonas palustris TIE-1 phosphoglycerate mutase YP_001990200.1 1257793 D 395960 CDS YP_001990201.1 192289596 6408842 1258811..1259146 1 NC_011004.1 KEGG: rsq:Rsph17025_3448 hypothetical protein; hypothetical protein 1259146 6408842 Rpal_1186 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990201.1 1258811 D 395960 CDS YP_001990202.1 192289597 6408843 complement(1259211..1260356) 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pla:Plav_0463 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 1260356 6408843 Rpal_1187 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001990202.1 1259211 R 395960 CDS YP_001990203.1 192289598 6408844 complement(1260735..1261604) 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: bja:bll2527 hydrolase; alpha/beta hydrolase fold protein 1261604 6408844 Rpal_1188 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001990203.1 1260735 R 395960 CDS YP_001990204.1 192289599 6408845 1261803..1262231 1 NC_011004.1 PFAM: regulatory protein ArsR; KEGG: bbt:BBta_3666 transcriptional regulatory protein, ARS family, SoxR protein; ArsR family transcriptional regulator 1262231 6408845 Rpal_1189 Rhodopseudomonas palustris TIE-1 ArsR family transcriptional regulator YP_001990204.1 1261803 D 395960 CDS YP_001990205.1 192289600 6408846 complement(1262245..1262625) 1 NC_011004.1 SMART: rhodanese domain protein; KEGG: rme:Rmet_2371 rhodanese-like protein; rhodanese domain-containing protein 1262625 6408846 Rpal_1190 Rhodopseudomonas palustris TIE-1 rhodanese domain-containing protein YP_001990205.1 1262245 R 395960 CDS YP_001990206.1 192289601 6408847 1262834..1263448 1 NC_011004.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: tbd:Tbd_2330 hypothetical protein; type 12 methyltransferase 1263448 6408847 Rpal_1191 Rhodopseudomonas palustris TIE-1 type 12 methyltransferase YP_001990206.1 1262834 D 395960 CDS YP_001990207.1 192289602 6408848 complement(1263456..1263851) 1 NC_011004.1 TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: ppd:Ppro_2504 nitrogenase-associated protein; nitrogenase-associated protein 1263851 6408848 Rpal_1192 Rhodopseudomonas palustris TIE-1 nitrogenase-associated protein YP_001990207.1 1263456 R 395960 CDS YP_001990208.1 192289603 6408849 complement(1263865..1264455) 1 NC_011004.1 KEGG: bja:blr6953 molybdenum ABC transporter ATP-binding protein; molybdenum ABC transporter ATP-binding protein 1264455 6408849 Rpal_1193 Rhodopseudomonas palustris TIE-1 molybdenum ABC transporter ATP-binding protein YP_001990208.1 1263865 R 395960 CDS YP_001990209.1 192289604 6408850 1264702..1265544 1 NC_011004.1 TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: bja:bll6950 pyrophosphorylase; modD protein 1265544 6408850 Rpal_1194 Rhodopseudomonas palustris TIE-1 modD protein YP_001990209.1 1264702 D 395960 CDS YP_001990210.1 192289605 6408851 complement(1265675..1267309) 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: xau:Xaut_4075 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1267309 6408851 Rpal_1195 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001990210.1 1265675 R 395960 CDS YP_001990211.1 192289606 6408852 1267553..1267759 1 NC_011004.1 KEGG: bra:BRADO2820 hypothetical protein; hypothetical protein 1267759 6408852 Rpal_1196 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990211.1 1267553 D 395960 CDS YP_001990212.1 192289607 6408853 1267838..1268488 1 NC_011004.1 PFAM: NUDIX hydrolase; KEGG: bja:bll6630 hypothetical protein; NUDIX hydrolase 1268488 6408853 Rpal_1197 Rhodopseudomonas palustris TIE-1 NUDIX hydrolase YP_001990212.1 1267838 D 395960 CDS YP_001990213.1 192289608 6408854 1268628..1269002 1 NC_011004.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha 1269002 6408854 Rpal_1198 Rhodopseudomonas palustris TIE-1 protocatechuate 4,5-dioxygenase subunit alpha YP_001990213.1 1268628 D 395960 CDS YP_001990214.1 192289609 6408855 1269018..1269875 1 NC_011004.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta 1269875 6408855 Rpal_1199 Rhodopseudomonas palustris TIE-1 protocatechuate 4,5-dioxygenase subunit beta YP_001990214.1 1269018 D 395960 CDS YP_001990215.1 192289610 6408856 complement(1270012..1270902) 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bbt:BBta_2709 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 1270902 6408856 Rpal_1200 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001990215.1 1270012 R 395960 CDS YP_001990216.1 192289611 6408857 1271054..1272241 1 NC_011004.1 PFAM: cytochrome P450; KEGG: bra:BRADO2350 cytochrome P450; cytochrome P450 1272241 6408857 Rpal_1201 Rhodopseudomonas palustris TIE-1 cytochrome P450 YP_001990216.1 1271054 D 395960 CDS YP_001990217.1 192289612 6408858 complement(1272278..1274224) 1 NC_011004.1 PFAM: beta-lactamase domain protein; KEGG: bra:BRADO2425 hypothetical protein; beta-lactamase domain-containing protein 1274224 6408858 Rpal_1202 Rhodopseudomonas palustris TIE-1 beta-lactamase domain-containing protein YP_001990217.1 1272278 R 395960 CDS YP_001990218.1 192289613 6408859 1274485..1275138 1 NC_011004.1 PFAM: DSBA oxidoreductase; KEGG: bja:bll0819 hypothetical protein; DSBA oxidoreductase 1275138 6408859 Rpal_1203 Rhodopseudomonas palustris TIE-1 DSBA oxidoreductase YP_001990218.1 1274485 D 395960 CDS YP_001990219.1 192289614 6408860 1275271..1276035 1 NC_011004.1 PFAM: protein of unknown function DUF81; KEGG: mlo:mll3907 integral membrane protein; hypothetical protein 1276035 6408860 Rpal_1204 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990219.1 1275271 D 395960 CDS YP_001990220.1 192289615 6408861 complement(1276061..1277503) 1 NC_011004.1 TIGRFAM: cytochrome C oxidase accessory protein CcoG; KEGG: bra:BRADO3206 nitrogen fixation protein FixG (homologous to RdxB), with 4Fe-4S ferredoxin, iron-sulfur binding domain; cytochrome C oxidase accessory protein CcoG 1277503 6408861 Rpal_1205 Rhodopseudomonas palustris TIE-1 cytochrome C oxidase accessory protein CcoG YP_001990220.1 1276061 R 395960 CDS YP_001990221.1 192289616 6408862 complement(1277622..1277822) 1 NC_011004.1 KEGG: bja:bsr3073 hypothetical protein; hypothetical protein 1277822 6408862 Rpal_1206 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990221.1 1277622 R 395960 CDS YP_001990222.1 192289617 6408863 1278127..1278717 1 NC_011004.1 PFAM: transcriptional regulator PadR family protein; KEGG: xau:Xaut_0164 transcriptional regulator, PadR-like family; PadR family transcriptional regulator 1278717 6408863 Rpal_1207 Rhodopseudomonas palustris TIE-1 PadR family transcriptional regulator YP_001990222.1 1278127 D 395960 CDS YP_001990223.1 192289618 6408864 1278806..1279339 1 NC_011004.1 TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: bja:blr2485 Rieske iron-sulfur protein; ubiquinol-cytochrome C reductase, iron-sulfur subunit 1279339 6408864 Rpal_1208 Rhodopseudomonas palustris TIE-1 ubiquinol-cytochrome C reductase, iron-sulfur subunit YP_001990223.1 1278806 D 395960 CDS YP_001990224.1 192289619 6408865 1279589..1279981 1 NC_011004.1 KEGG: rsq:Rsph17025_1840 hypothetical protein; hypothetical protein 1279981 6408865 Rpal_1209 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990224.1 1279589 D 395960 CDS YP_001990225.1 192289620 6408866 complement(1280163..1280363) 1 NC_011004.1 KEGG: bra:BRADO4593 conserved hypothetical protein; secreted protein; hypothetical protein 1280363 6408866 Rpal_1210 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990225.1 1280163 R 395960 CDS YP_001990226.1 192289621 6408867 1280444..1280785 1 NC_011004.1 PFAM: regulatory protein ArsR; KEGG: bja:bll5773 transcriptional regulatory protein; ArsR family transcriptional regulator 1280785 6408867 Rpal_1211 Rhodopseudomonas palustris TIE-1 ArsR family transcriptional regulator YP_001990226.1 1280444 D 395960 CDS YP_001990227.1 192289622 6408868 1280787..1281782 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: bra:BRADO3201 membrane fusion protein, component of an efflux pump (RND family, MFP subunit); RND family efflux transporter MFP subunit 1281782 6408868 Rpal_1212 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001990227.1 1280787 D 395960 CDS YP_001990228.1 192289623 6408869 1281779..1285003 1 NC_011004.1 PFAM: acriflavin resistance protein; KEGG: bja:bll5771 AcrB/AcrD/AcrF family cation efflux protein; acriflavin resistance protein 1285003 6408869 Rpal_1213 Rhodopseudomonas palustris TIE-1 acriflavin resistance protein YP_001990228.1 1281779 D 395960 CDS YP_001990229.1 192289624 6408870 1285065..1285718 1 NC_011004.1 PFAM: DSBA oxidoreductase; KEGG: bja:blr1349 hypothetical protein; DSBA oxidoreductase 1285718 6408870 Rpal_1214 Rhodopseudomonas palustris TIE-1 DSBA oxidoreductase YP_001990229.1 1285065 D 395960 CDS YP_001990230.1 192289625 6408871 1285927..1286238 1 NC_011004.1 KEGG: eba:ebA3059 hypothetical protein; hypothetical protein 1286238 6408871 Rpal_1215 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990230.1 1285927 D 395960 CDS YP_001990231.1 192289626 6408872 1286243..1287505 1 NC_011004.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: jan:Jann_3739 oxidoreductase FAD/NAD(P)-binding; Ferric reductase transmembrane protein domain-containing protein 1287505 6408872 Rpal_1216 Rhodopseudomonas palustris TIE-1 Ferric reductase transmembrane protein domain-containing protein YP_001990231.1 1286243 D 395960 CDS YP_001990232.1 192289627 6408873 1287502..1287867 1 NC_011004.1 PFAM: cytochrome b5; KEGG: mgr:MGG_09315 hypothetical protein; cytochrome b5 1287867 6408873 Rpal_1217 Rhodopseudomonas palustris TIE-1 cytochrome b5 YP_001990232.1 1287502 D 395960 CDS YP_001990233.1 192289628 6408874 complement(1287967..1289097) 1 NC_011004.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: nha:Nham_3225 DNA methylase N-4/N-6; DNA methylase N-4/N-6 domain-containing protein 1289097 6408874 Rpal_1218 Rhodopseudomonas palustris TIE-1 DNA methylase N-4/N-6 domain-containing protein YP_001990233.1 1287967 R 395960 CDS YP_001990234.1 192289629 6408875 1289477..1290394 1 NC_011004.1 PFAM: protein of unknown function zinc metallopeptidase KEGG: nha:Nham_3224 protein of unknown function, zinc metallopeptidase; hypothetical protein 1290394 6408875 Rpal_1219 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990234.1 1289477 D 395960 CDS YP_001990235.1 192289630 6408876 1290533..1291081 1 NC_011004.1 TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: bja:blr2511 molybdopterin biosynthesis protein B; molybdenum cofactor biosynthesis protein B 1291081 6408876 Rpal_1220 Rhodopseudomonas palustris TIE-1 molybdenum cofactor biosynthesis protein B YP_001990235.1 1290533 D 395960 CDS YP_001990236.1 192289631 6408877 1291194..1292012 1 NC_011004.1 PFAM: coenzyme A transferase; KEGG: bja:bll1293 glutaconate CoA-transferase subunit A; coenzyme A transferase 1292012 6408877 Rpal_1221 Rhodopseudomonas palustris TIE-1 coenzyme A transferase YP_001990236.1 1291194 D 395960 CDS YP_001990237.1 192289632 6408878 1292009..1292761 1 NC_011004.1 PFAM: coenzyme A transferase; KEGG: pde:Pden_4599 CoA transferase, subunit B; coenzyme A transferase 1292761 6408878 Rpal_1222 Rhodopseudomonas palustris TIE-1 coenzyme A transferase YP_001990237.1 1292009 D 395960 CDS YP_001990238.1 192289633 6408879 complement(1292921..1293859) 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: bja:bll2512 transcriptional regulatory protein; MarR family transcriptional regulator 1293859 6408879 Rpal_1223 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001990238.1 1292921 R 395960 CDS YP_001990239.1 192289634 6408880 complement(1294027..1294593) 1 NC_011004.1 KEGG: bja:bll2513 hypothetical protein; hypothetical protein 1294593 6408880 Rpal_1224 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990239.1 1294027 R 395960 CDS YP_001990240.1 192289635 6408881 1294774..1295934 1 NC_011004.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bja:blr2519 hypothetical protein; radical SAM domain-containing protein 1295934 6408881 Rpal_1225 Rhodopseudomonas palustris TIE-1 radical SAM domain-containing protein YP_001990240.1 1294774 D 395960 CDS YP_001990241.1 192289636 6408882 1296031..1296876 1 NC_011004.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1296876 rnhB 6408882 rnhB Rhodopseudomonas palustris TIE-1 ribonuclease HII YP_001990241.1 1296031 D 395960 CDS YP_001990242.1 192289637 6408883 1296948..1298456 1 NC_011004.1 KEGG: nha:Nham_3220 hypothetical protein; hypothetical protein 1298456 6408883 Rpal_1227 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990242.1 1296948 D 395960 CDS YP_001990243.1 192289638 6408884 complement(1298515..1299345) 1 NC_011004.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: bja:bll2523 hypothetical protein; phage SPO1 DNA polymerase-like protein 1299345 6408884 Rpal_1228 Rhodopseudomonas palustris TIE-1 phage SPO1 DNA polymerase-like protein YP_001990243.1 1298515 R 395960 CDS YP_001990244.1 192289639 6408885 1299547..1301205 1 NC_011004.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: bra:BRADO2020 electron transfer flavoprotein dehydrogenases; electron-transferring-flavoprotein dehydrogenase 1301205 6408885 Rpal_1229 Rhodopseudomonas palustris TIE-1 electron-transferring-flavoprotein dehydrogenase YP_001990244.1 1299547 D 395960 CDS YP_001990245.1 192289640 6408886 1301464..1303248 1 NC_011004.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr2525 hypothetical protein; hypothetical protein 1303248 6408886 Rpal_1230 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990245.1 1301464 D 395960 CDS YP_001990246.1 192289641 6408887 1303353..1304252 1 NC_011004.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1304252 6408887 Rpal_1231 Rhodopseudomonas palustris TIE-1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001990246.1 1303353 D 395960 CDS YP_001990247.1 192289642 6408888 complement(1304398..1305408) 1 NC_011004.1 PFAM: polyprenyl synthetase; KEGG: bbt:BBta_2349 octaprenyl diphosphate synthase; polyprenyl synthetase 1305408 6408888 Rpal_1232 Rhodopseudomonas palustris TIE-1 polyprenyl synthetase YP_001990247.1 1304398 R 395960 CDS YP_001990248.1 192289643 6408889 1305616..1305843 1 NC_011004.1 KEGG: bbt:BBta_2350 hypothetical protein; hypothetical protein 1305843 6408889 Rpal_1233 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990248.1 1305616 D 395960 CDS YP_001990249.1 192289644 6408890 1305836..1306615 1 NC_011004.1 PFAM: methyltransferase small; KEGG: bra:BRADO2025 conserved hypothetical protein; S-adenosyl-L-methionine-dependent methyltransferase domain; methyltransferase small 1306615 6408890 Rpal_1234 Rhodopseudomonas palustris TIE-1 methyltransferase small YP_001990249.1 1305836 D 395960 CDS YP_001990250.1 192289645 6408891 1306861..1307763 1 NC_011004.1 PFAM: peptidase S49; KEGG: bja:blr2534 proteinase; peptidase S49 1307763 6408891 Rpal_1235 Rhodopseudomonas palustris TIE-1 peptidase S49 YP_001990250.1 1306861 D 395960 CDS YP_001990251.1 192289646 6408892 1307882..1308070 1 NC_011004.1 KEGG: bbt:BBta_2354 hypothetical protein; hypothetical protein 1308070 6408892 Rpal_1236 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990251.1 1307882 D 395960 CDS YP_001990252.1 192289647 6408893 1308496..1309440 1 NC_011004.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1309440 glyQ 6408893 glyQ Rhodopseudomonas palustris TIE-1 glycyl-tRNA synthetase subunit alpha YP_001990252.1 1308496 D 395960 CDS YP_001990253.1 192289648 6408894 1309522..1309956 1 NC_011004.1 PFAM: protein of unknown function DUF559; KEGG: bbt:BBta_2356 hypothetical protein; hypothetical protein 1309956 6408894 Rpal_1238 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990253.1 1309522 D 395960 CDS YP_001990254.1 192289649 6408895 1309956..1312238 1 NC_011004.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1312238 glyS 6408895 glyS Rhodopseudomonas palustris TIE-1 glycyl-tRNA synthetase subunit beta YP_001990254.1 1309956 D 395960 CDS YP_001990255.1 192289650 6408896 1312697..1313800 1 NC_011004.1 KEGG: cak:Caul_3593 hypothetical protein; hypothetical protein 1313800 6408896 Rpal_1240 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990255.1 1312697 D 395960 CDS YP_001990256.1 192289651 6408897 complement(1313814..1315100) 1 NC_011004.1 KEGG: acr:Acry_0183 membrane protein-like protein; membrane protein 1315100 6408897 Rpal_1241 Rhodopseudomonas palustris TIE-1 membrane protein YP_001990256.1 1313814 R 395960 CDS YP_001990257.1 192289652 6408898 1315575..1315730 1 NC_011004.1 KEGG: bbt:BBta_2359 hypothetical protein; hypothetical protein 1315730 6408898 Rpal_1242 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990257.1 1315575 D 395960 CDS YP_001990258.1 192289653 6408899 1315822..1318848 1 NC_011004.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 1318848 6408899 Rpal_1243 Rhodopseudomonas palustris TIE-1 pyruvate phosphate dikinase YP_001990258.1 1315822 D 395960 CDS YP_001990259.1 192289654 6408900 1319165..1320595 1 NC_011004.1 PFAM: cell wall hydrolase SleB; KEGG: nha:Nham_3504 cell wall hydrolase, SleB; cell wall hydrolase SleB 1320595 6408900 Rpal_1244 Rhodopseudomonas palustris TIE-1 cell wall hydrolase SleB YP_001990259.1 1319165 D 395960 CDS YP_001990260.1 192289655 6408901 complement(1321153..1322028) 1 NC_011004.1 KEGG: bja:bll2540 nicotinate-mononucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 1322028 6408901 Rpal_1245 Rhodopseudomonas palustris TIE-1 nicotinate-nucleotide pyrophosphorylase YP_001990260.1 1321153 R 395960 CDS YP_001990261.1 192289656 6408902 complement(1322045..1323661) 1 NC_011004.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 1323661 6408902 Rpal_1246 Rhodopseudomonas palustris TIE-1 L-aspartate oxidase YP_001990261.1 1322045 R 395960 CDS YP_001990262.1 192289657 6408903 complement(1323755..1324867) 1 NC_011004.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1324867 6408903 Rpal_1247 Rhodopseudomonas palustris TIE-1 quinolinate synthetase YP_001990262.1 1323755 R 395960 CDS YP_001990263.1 192289658 6408904 1325221..1326207 1 NC_011004.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: nha:Nham_3502 alcohol dehydrogenase GroES-like; YhdH/YhfP family quinone oxidoreductase 1326207 6408904 Rpal_1248 Rhodopseudomonas palustris TIE-1 YhdH/YhfP family quinone oxidoreductase YP_001990263.1 1325221 D 395960 CDS YP_001990264.1 192289659 6408905 1326322..1326906 1 NC_011004.1 KEGG: nha:Nham_3501 hypothetical protein; hypothetical protein 1326906 6408905 Rpal_1249 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990264.1 1326322 D 395960 CDS YP_001990265.1 192289660 6408906 complement(1326940..1329621) 1 NC_011004.1 KEGG: bja:bll2549 hypothetical protein; hypothetical protein 1329621 6408906 Rpal_1250 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990265.1 1326940 R 395960 CDS YP_001990266.1 192289661 6408907 complement(1329673..1330668) 1 NC_011004.1 KEGG: bja:bll2550 hypothetical protein; hypothetical protein 1330668 6408907 Rpal_1251 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990266.1 1329673 R 395960 CDS YP_001990267.1 192289662 6408908 complement(1330665..1331171) 1 NC_011004.1 KEGG: nha:Nham_4022 hypothetical protein; hypothetical protein 1331171 6408908 Rpal_1252 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990267.1 1330665 R 395960 CDS YP_001990268.1 192289663 6408909 complement(1331238..1331855) 1 NC_011004.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: nha:Nham_4021 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1331855 6408909 Rpal_1253 Rhodopseudomonas palustris TIE-1 metal dependent phosphohydrolase YP_001990268.1 1331238 R 395960 CDS YP_001990269.1 192289664 6408910 1332033..1332203 1 NC_011004.1 hypothetical protein 1332203 6408910 Rpal_1254 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990269.1 1332033 D 395960 CDS YP_001990270.1 192289665 6408911 complement(1332210..1332866) 1 NC_011004.1 KEGG: bja:bll2553 3-methyladenine-DNA glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 1332866 6408911 Rpal_1255 Rhodopseudomonas palustris TIE-1 DNA-3-methyladenine glycosylase I YP_001990270.1 1332210 R 395960 CDS YP_001990271.1 192289666 6408912 complement(1332863..1333744) 1 NC_011004.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: nwi:Nwi_2704 glycine cleavage T protein (aminomethyl transferase); folate-binding protein YgfZ 1333744 6408912 Rpal_1256 Rhodopseudomonas palustris TIE-1 folate-binding protein YgfZ YP_001990271.1 1332863 R 395960 CDS YP_001990272.1 192289667 6408913 1333892..1335226 1 NC_011004.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 1335226 6408913 Rpal_1257 Rhodopseudomonas palustris TIE-1 dihydroorotase YP_001990272.1 1333892 D 395960 CDS YP_001990273.1 192289668 6408914 1335735..1335890 1 NC_011004.1 KEGG: bra:BRADO5216 hypothetical protein; hypothetical protein 1335890 6408914 Rpal_1258 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990273.1 1335735 D 395960 CDS YP_001990274.1 192289669 6408915 complement(1335911..1336174) 1 NC_011004.1 KEGG: nha:Nham_4017 hypothetical protein; hypothetical protein 1336174 6408915 Rpal_1259 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990274.1 1335911 R 395960 CDS YP_001990275.1 192289670 6408916 complement(1336305..1336682) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bbt:BBta_2380 exported protein of unknown function; hypothetical protein 1336682 6408916 Rpal_1260 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990275.1 1336305 R 395960 CDS YP_001990276.1 192289671 6408917 complement(1336745..1337188) 1 NC_011004.1 PFAM: NUDIX hydrolase; KEGG: bja:bll2562 GDP-mannose mannosyl hydrolase; NUDIX hydrolase 1337188 6408917 Rpal_1261 Rhodopseudomonas palustris TIE-1 NUDIX hydrolase YP_001990276.1 1336745 R 395960 CDS YP_001990277.1 192289672 6408918 complement(1337185..1337691) 1 NC_011004.1 KEGG: nha:Nham_4012 hypothetical protein; hypothetical protein 1337691 6408918 Rpal_1262 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990277.1 1337185 R 395960 CDS YP_001990278.1 192289673 6408919 1337744..1338517 1 NC_011004.1 PFAM: protein of unknown function DUF159; KEGG: bja:blr2564 hypothetical protein; hypothetical protein 1338517 6408919 Rpal_1263 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990278.1 1337744 D 395960 CDS YP_001990279.1 192289674 6408920 1338543..1338773 1 NC_011004.1 KEGG: bra:BRADO3468 hypothetical protein; hypothetical protein 1338773 6408920 Rpal_1264 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990279.1 1338543 D 395960 CDS YP_001990280.1 192289675 6408921 1338770..1339066 1 NC_011004.1 PFAM: plasmid stabilization system; KEGG: rle:pRL70123 stabilisation protein; plasmid stabilization system protein 1339066 6408921 Rpal_1265 Rhodopseudomonas palustris TIE-1 plasmid stabilization system protein YP_001990280.1 1338770 D 395960 CDS YP_001990281.1 192289676 6408922 complement(1339069..1340496) 1 NC_011004.1 PFAM: FAD linked oxidase domain protein; KEGG: bbt:BBta_2386 D-lactate ferricytochrome C oxidoreductase; FAD linked oxidase domain-containing protein 1340496 6408922 Rpal_1266 Rhodopseudomonas palustris TIE-1 FAD linked oxidase domain-containing protein YP_001990281.1 1339069 R 395960 CDS YP_001990282.1 192289677 6408923 complement(1340615..1341595) 1 NC_011004.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: bja:bll2570 hypothetical protein; Sua5/YciO/YrdC/YwlC family protein 1341595 6408923 Rpal_1267 Rhodopseudomonas palustris TIE-1 Sua5/YciO/YrdC/YwlC family protein YP_001990282.1 1340615 R 395960 CDS YP_001990283.1 192289678 6408924 1341841..1342743 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_3223 transcriptional regulator; AraC family transcriptional regulator 1342743 6408924 Rpal_1268 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001990283.1 1341841 D 395960 CDS YP_001990284.1 192289679 6408925 1342869..1344155 1 NC_011004.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azc:AZC_3224 4-methylmuconolactone transporter; major facilitator superfamily protein 1344155 6408925 Rpal_1269 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001990284.1 1342869 D 395960 CDS YP_001990285.1 192289680 6408926 1344148..1345050 1 NC_011004.1 PFAM: amidohydrolase 2; KEGG: azc:AZC_3225 2-pyrone-4,6-dicarboxylate hydrolase; amidohydrolase 2 1345050 6408926 Rpal_1270 Rhodopseudomonas palustris TIE-1 amidohydrolase 2 YP_001990285.1 1344148 D 395960 CDS YP_001990286.1 192289681 6408928 complement(1345348..1346001) 1 NC_011004.1 KEGG: dre:553448 hypothetical protein LOC553448; hypothetical protein 1346001 6408928 Rpal_1271 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990286.1 1345348 R 395960 CDS YP_001990287.1 192289682 6408929 1346352..1347686 1 NC_011004.1 PFAM: Curlin associated repeat protein; KEGG: shm:Shewmr7_3300 curlin associated repeat protein; curlin associated repeat-containing protein 1347686 6408929 Rpal_1272 Rhodopseudomonas palustris TIE-1 curlin associated repeat-containing protein YP_001990287.1 1346352 D 395960 CDS YP_001990288.1 192289683 6408930 1347801..1348121 1 NC_011004.1 KEGG: ret:RHE_PE00163 hypothetical protein; hypothetical protein 1348121 6408930 Rpal_1273 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990288.1 1347801 D 395960 CDS YP_001990289.1 192289684 6408931 1348118..1348609 1 NC_011004.1 KEGG: bur:Bcep18194_B2589 hypothetical protein; hypothetical protein 1348609 6408931 Rpal_1274 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990289.1 1348118 D 395960 CDS YP_001990290.1 192289685 6408932 1348606..1349022 1 NC_011004.1 KEGG: fjo:Fjoh_2350 hypothetical protein; hypothetical protein 1349022 6408932 Rpal_1275 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990290.1 1348606 D 395960 CDS YP_001990291.1 192289686 6408933 1349074..1350015 1 NC_011004.1 KEGG: fjo:Fjoh_2351 curli production assembly/transport component CsgG; curli production assembly/transport component CsgG 1350015 6408933 Rpal_1276 Rhodopseudomonas palustris TIE-1 curli production assembly/transport component CsgG YP_001990291.1 1349074 D 395960 CDS YP_001990292.1 192289687 6408934 1350018..1350812 1 NC_011004.1 PFAM: lytic transglycosylase; KEGG: bja:bll2706 probable transglycosylase; lytic transglycosylase 1350812 6408934 Rpal_1277 Rhodopseudomonas palustris TIE-1 lytic transglycosylase YP_001990292.1 1350018 D 395960 CDS YP_001990293.1 192289688 6408935 complement(1350844..1351125) 1 NC_011004.1 hypothetical protein 1351125 6408935 Rpal_1278 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990293.1 1350844 R 395960 CDS YP_001990294.1 192289689 6408936 1351400..1351660 1 NC_011004.1 KEGG: xau:Xaut_1427 hypothetical protein; hypothetical protein 1351660 6408936 Rpal_1279 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990294.1 1351400 D 395960 CDS YP_001990295.1 192289690 6408937 1351814..1352485 1 NC_011004.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mag:amb3351 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; Crp/Fnr family transcriptional regulator 1352485 6408937 Rpal_1280 Rhodopseudomonas palustris TIE-1 Crp/Fnr family transcriptional regulator YP_001990295.1 1351814 D 395960 CDS YP_001990296.1 192289691 6408938 1352601..1352789 1 NC_011004.1 KEGG: azo:azo2883 conserved hypothetical secreted protein; hypothetical protein 1352789 6408938 Rpal_1281 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990296.1 1352601 D 395960 CDS YP_001990297.1 192289692 6408939 1352866..1353237 1 NC_011004.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: hha:Hhal_0074 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase 1353237 6408939 Rpal_1282 Rhodopseudomonas palustris TIE-1 alkylhydroperoxidase YP_001990297.1 1352866 D 395960 CDS YP_001990298.1 192289693 6408940 1353373..1354452 1 NC_011004.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: bra:BRADO2133 GTP cyclohydrolase II, riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1354452 6408940 Rpal_1283 Rhodopseudomonas palustris TIE-1 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001990298.1 1353373 D 395960 CDS YP_001990299.1 192289694 6408941 1354513..1355727 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_2451 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1355727 6408941 Rpal_1284 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001990299.1 1354513 D 395960 CDS YP_001990300.1 192289695 6408942 1355922..1356854 1 NC_011004.1 PFAM: beta-lactamase domain protein; KEGG: bra:BRADO2135 beta-lactamase; beta-lactamase domain-containing protein 1356854 6408942 Rpal_1285 Rhodopseudomonas palustris TIE-1 beta-lactamase domain-containing protein YP_001990300.1 1355922 D 395960 CDS YP_001990301.1 192289696 6408943 complement(1356868..1358619) 1 NC_011004.1 PFAM: chemotaxis sensory transducer; KEGG: bja:bll1533 methyl accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1358619 6408943 Rpal_1286 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001990301.1 1356868 R 395960 CDS YP_001990302.1 192289697 6408944 1358816..1359562 1 NC_011004.1 PFAM: protein of unknown function DUF28; KEGG: bja:blr1534 hypothetical protein; hypothetical protein 1359562 6408944 Rpal_1287 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990302.1 1358816 D 395960 CDS YP_001990303.1 192289698 6408945 complement(1359608..1359913) 1 NC_011004.1 KEGG: cpv:cgd1_590 hypothetical protein, proline rich C-terminus, signal peptide, very large protein; hypothetical protein 1359913 6408945 Rpal_1288 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990303.1 1359608 R 395960 CDS YP_001990304.1 192289699 6408946 1360115..1360639 1 NC_011004.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1360639 ruvC 6408946 ruvC Rhodopseudomonas palustris TIE-1 Holliday junction resolvase YP_001990304.1 1360115 D 395960 CDS YP_001990305.1 192289700 6408947 1360824..1361441 1 NC_011004.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1361441 ruvA 6408947 ruvA Rhodopseudomonas palustris TIE-1 Holliday junction DNA helicase RuvA YP_001990305.1 1360824 D 395960 CDS YP_001990306.1 192289701 6408948 1361438..1361863 1 NC_011004.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bbt:BBta_6907 hypothetical protein; hypothetical protein 1361863 6408948 Rpal_1291 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990306.1 1361438 D 395960 CDS YP_001990307.1 192289702 6408949 1362042..1363091 1 NC_011004.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1363091 ruvB 6408949 ruvB Rhodopseudomonas palustris TIE-1 Holliday junction DNA helicase RuvB YP_001990307.1 1362042 D 395960 CDS YP_001990308.1 192289703 6408950 1363099..1363563 1 NC_011004.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: nha:Nham_3520 4-hydroxybenzoyl-CoA thioesterase; tol-pal system-associated acyl-CoA thioesterase 1363563 6408950 Rpal_1293 Rhodopseudomonas palustris TIE-1 tol-pal system-associated acyl-CoA thioesterase YP_001990308.1 1363099 D 395960 CDS YP_001990309.1 192289704 6408951 1363663..1364973 1 NC_011004.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gbe:GbCGDNIH1_1652 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1364973 6408951 Rpal_1294 Rhodopseudomonas palustris TIE-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001990309.1 1363663 D 395960 CDS YP_001990310.1 192289705 6408952 1365083..1366333 1 NC_011004.1 KEGG: bja:bll7876 similar to OpgC protein; OpgC protein-like protein 1366333 6408952 Rpal_1295 Rhodopseudomonas palustris TIE-1 OpgC protein-like protein YP_001990310.1 1365083 D 395960 CDS YP_001990311.1 192289706 6408953 1366391..1366858 1 NC_011004.1 PFAM: protein of unknown function DUF1348; KEGG: bja:bll7210 hypothetical protein; hypothetical protein 1366858 6408953 Rpal_1296 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990311.1 1366391 D 395960 CDS YP_001990312.1 192289707 6408954 1366875..1367423 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: xau:Xaut_1146 transcriptional regulator, TetR family; TetR family transcriptional regulator 1367423 6408954 Rpal_1297 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001990312.1 1366875 D 395960 CDS YP_001990313.1 192289708 6408955 1367573..1367944 1 NC_011004.1 PFAM: DGPFAETKE family protein; KEGG: bja:bll7171 hypothetical protein; DGPFAETKE family protein 1367944 6408955 Rpal_1298 Rhodopseudomonas palustris TIE-1 DGPFAETKE family protein YP_001990313.1 1367573 D 395960 CDS YP_001990314.1 192289709 6408956 1367941..1369209 1 NC_011004.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bja:bll7170 hypothetical protein; ECF subfamily RNA polymerase sigma-24 subunit 1369209 6408956 Rpal_1299 Rhodopseudomonas palustris TIE-1 ECF subfamily RNA polymerase sigma-24 subunit YP_001990314.1 1367941 D 395960 CDS YP_001990315.1 192289710 6408957 complement(1369230..1370018) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr7165 oxidoreductase; short-chain dehydrogenase/reductase SDR 1370018 6408957 Rpal_1300 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001990315.1 1369230 R 395960 CDS YP_001990316.1 192289711 6408958 1370259..1370435 1 NC_011004.1 KEGG: rsh:Rsph17029_3809 hypothetical protein; hypothetical protein 1370435 6408958 Rpal_1301 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990316.1 1370259 D 395960 CDS YP_001990317.1 192289712 6408959 complement(1370511..1370612) 1 NC_011004.1 hypothetical protein 1370612 6408959 Rpal_1302 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990317.1 1370511 R 395960 CDS YP_001990318.1 192289713 6408960 1370940..1371356 1 NC_011004.1 PFAM: DGPFAETKE family protein; KEGG: nha:Nham_3518 hypothetical protein; DGPFAETKE family protein 1371356 6408960 Rpal_1303 Rhodopseudomonas palustris TIE-1 DGPFAETKE family protein YP_001990318.1 1370940 D 395960 CDS YP_001990319.1 192289714 6408961 1371495..1372199 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: nha:Nham_3517 transcriptional regulator, TetR family; TetR family transcriptional regulator 1372199 6408961 Rpal_1304 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001990319.1 1371495 D 395960 CDS YP_001990320.1 192289715 6408962 1372342..1372809 1 NC_011004.1 KEGG: bja:bll7160 hypothetical protein; hypothetical protein 1372809 6408962 Rpal_1305 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990320.1 1372342 D 395960 CDS YP_001990321.1 192289716 6408963 1372959..1373426 1 NC_011004.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: nha:Nham_3277 alkylhydroperoxidase AhpD core; alkylhydroperoxidase 1373426 6408963 Rpal_1306 Rhodopseudomonas palustris TIE-1 alkylhydroperoxidase YP_001990321.1 1372959 D 395960 CDS YP_001990322.1 192289717 6408964 1373410..1374315 1 NC_011004.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigJ 1374315 6408964 Rpal_1307 Rhodopseudomonas palustris TIE-1 RNA polymerase sigma factor SigJ YP_001990322.1 1373410 D 395960 CDS YP_001990323.1 192289718 6408965 1374623..1375333 1 NC_011004.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: nha:Nham_3515 MotA/TolQ/ExbB proton channel; protein TolQ 1375333 6408965 Rpal_1308 Rhodopseudomonas palustris TIE-1 protein TolQ YP_001990323.1 1374623 D 395960 CDS YP_001990324.1 192289719 6408966 1375431..1375838 1 NC_011004.1 PFAM: biopolymer transport protein ExbD/TolR; KEGG: bra:BRADO1171 TolR protein; biopolymer transport protein ExbD/TolR 1375838 6408966 Rpal_1309 Rhodopseudomonas palustris TIE-1 biopolymer transport protein ExbD/TolR YP_001990324.1 1375431 D 395960 CDS YP_001990325.1 192289720 6408967 1375887..1376870 1 NC_011004.1 TIGRFAM: protein TolA; KEGG: nha:Nham_3513 TolA; protein TolA 1376870 6408967 Rpal_1310 Rhodopseudomonas palustris TIE-1 protein TolA YP_001990325.1 1375887 D 395960 CDS YP_001990326.1 192289721 6408968 1376943..1378277 1 NC_011004.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1378277 tolB 6408968 tolB Rhodopseudomonas palustris TIE-1 translocation protein TolB YP_001990326.1 1376943 D 395960 CDS YP_001990327.1 192289722 6408969 1378448..1380778 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: nha:Nham_3511 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains); diguanylate cyclase/phosphodiesterase 1380778 6408969 Rpal_1312 Rhodopseudomonas palustris TIE-1 diguanylate cyclase/phosphodiesterase YP_001990327.1 1378448 D 395960 CDS YP_001990328.1 192289723 6408970 1380973..1381722 1 NC_011004.1 KEGG: nha:Nham_3510 hypothetical protein; hypothetical protein 1381722 6408970 Rpal_1313 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990328.1 1380973 D 395960 CDS YP_001990329.1 192289724 6408971 1382049..1382546 1 NC_011004.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: bja:bll7149 peptidoglycan-associated lipoprotein; peptidoglycan-associated lipoprotein 1382546 6408971 Rpal_1314 Rhodopseudomonas palustris TIE-1 peptidoglycan-associated lipoprotein YP_001990329.1 1382049 D 395960 CDS YP_001990330.1 192289725 6408972 1382702..1383739 1 NC_011004.1 TIGRFAM: tol-pal system protein YbgF; KEGG: bja:bll7148 hypothetical protein; tol-pal system protein YbgF 1383739 6408972 Rpal_1315 Rhodopseudomonas palustris TIE-1 tol-pal system protein YbgF YP_001990330.1 1382702 D 395960 CDS YP_001990331.1 192289726 6408973 1383794..1384834 1 NC_011004.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: bja:bll7147 hypothetical protein; tRNA(Ile)-lysidine synthetase 1384834 6408973 Rpal_1316 Rhodopseudomonas palustris TIE-1 tRNA(Ile)-lysidine synthetase YP_001990331.1 1383794 D 395960 CDS YP_001990332.1 192289727 6408974 1385066..1386982 1 NC_011004.1 KEGG: nha:Nham_3506 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; ATPase AAA; SMART: ATPase AAA; ATP-dependent metalloprotease FtsH 1386982 6408974 Rpal_1317 Rhodopseudomonas palustris TIE-1 ATP-dependent metalloprotease FtsH YP_001990332.1 1385066 D 395960 CDS YP_001990333.1 192289728 6408975 1387115..1387864 1 NC_011004.1 PFAM: AzlC family protein; KEGG: azc:AZC_0085 branched-chain amino acid transport protein; AzlC family protein 1387864 6408975 Rpal_1318 Rhodopseudomonas palustris TIE-1 AzlC family protein YP_001990333.1 1387115 D 395960 CDS YP_001990334.1 192289729 6408976 1387861..1388178 1 NC_011004.1 PFAM: branched-chain amino acid transport; KEGG: xau:Xaut_1764 branched-chain amino acid transport; branched-chain amino acid transport 1388178 6408976 Rpal_1319 Rhodopseudomonas palustris TIE-1 branched-chain amino acid transport YP_001990334.1 1387861 D 395960 CDS YP_001990335.1 192289730 6408977 1388365..1389039 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: bbt:BBta_6871 transcriptional regulator, TetR family; TetR family transcriptional regulator 1389039 6408977 Rpal_1320 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001990335.1 1388365 D 395960 CDS YP_001990336.1 192289731 6408978 1389163..1390656 1 NC_011004.1 PFAM: FAD linked oxidase domain protein; KEGG: bbt:BBta_1662 glycolate oxidase, subunit GlcD; FAD linked oxidase domain-containing protein 1390656 6408978 Rpal_1321 Rhodopseudomonas palustris TIE-1 FAD linked oxidase domain-containing protein YP_001990336.1 1389163 D 395960 CDS YP_001990337.1 192289732 6408979 1390819..1392060 1 NC_011004.1 PFAM: FAD linked oxidase domain protein; KEGG: bja:bll7541 glycolate oxidase subunit; FAD linked oxidase domain-containing protein 1392060 6408979 Rpal_1322 Rhodopseudomonas palustris TIE-1 FAD linked oxidase domain-containing protein YP_001990337.1 1390819 D 395960 CDS YP_001990338.1 192289733 6408980 1392057..1393370 1 NC_011004.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: nha:Nham_3202 protein of unknown function DUF224, cysteine-rich region; hypothetical protein 1393370 6408980 Rpal_1323 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990338.1 1392057 D 395960 CDS YP_001990339.1 192289734 6408981 1393445..1394380 1 NC_011004.1 KEGG: pae:PA5253 alginate regulatory protein AlgP; hypothetical protein 1394380 6408981 Rpal_1324 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990339.1 1393445 D 395960 CDS YP_001990340.1 192289735 6408982 1394801..1395772 1 NC_011004.1 KEGG: nha:Nham_3199 hypothetical protein; hypothetical protein 1395772 6408982 Rpal_1325 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990340.1 1394801 D 395960 CDS YP_001990341.1 192289736 6408983 complement(1396034..1397794) 1 NC_011004.1 PFAM: ABC transporter; SbmABacA family protein; ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_1667 ABC transporter (fused ATP-binding and permease components); ABC transporter 1397794 6408983 Rpal_1326 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990341.1 1396034 R 395960 CDS YP_001990342.1 192289737 6408984 1398065..1399729 1 NC_011004.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: bra:BRADO6118 glycolate permease (LctP family); L-lactate transport 1399729 6408984 Rpal_1327 Rhodopseudomonas palustris TIE-1 L-lactate transport YP_001990342.1 1398065 D 395960 CDS YP_001990343.1 192289738 6408985 1399874..1400290 1 NC_011004.1 KEGG: nwi:Nwi_2577 hypothetical protein; hypothetical protein 1400290 6408985 Rpal_1328 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990343.1 1399874 D 395960 CDS YP_001990344.1 192289739 6408986 complement(1400293..1401798) 1 NC_011004.1 PFAM: FAD dependent oxidoreductase; KEGG: bja:blr7054 hypothetical protein; FAD dependent oxidoreductase 1401798 6408986 Rpal_1329 Rhodopseudomonas palustris TIE-1 FAD dependent oxidoreductase YP_001990344.1 1400293 R 395960 CDS YP_001990345.1 192289740 6408987 complement(1401911..1403104) 1 NC_011004.1 KEGG: bbt:BBta_1670 exported protein of unknown function; hypothetical protein 1403104 6408987 Rpal_1330 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990345.1 1401911 R 395960 CDS YP_001990346.1 192289741 6408988 complement(1403319..1404962) 1 NC_011004.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; the rhizobia have multiple copies of the groEL gene which are active under different environmental conditions; the S. meliloti protein in this cluster is not associated with a groES gene; chaperonin GroEL 1404962 groEL 6408988 groEL Rhodopseudomonas palustris TIE-1 chaperonin GroEL YP_001990346.1 1403319 R 395960 CDS YP_001990347.1 192289742 6408989 complement(1405002..1405298) 1 NC_011004.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1405298 groES 6408989 groES Rhodopseudomonas palustris TIE-1 co-chaperonin GroES YP_001990347.1 1405002 R 395960 CDS YP_001990348.1 192289743 6408990 1405596..1406111 1 NC_011004.1 KEGG: nha:Nham_3194 hypothetical protein; hypothetical protein 1406111 6408990 Rpal_1333 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990348.1 1405596 D 395960 CDS YP_001990349.1 192289744 6408991 1406155..1407363 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_1381 major facilitator superfamily MFS_1; major facilitator superfamily protein 1407363 6408991 Rpal_1334 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001990349.1 1406155 D 395960 CDS YP_001990350.1 192289745 6408992 complement(1407379..1408170) 1 NC_011004.1 KEGG: bra:BRADO6112 conserved hypothetical protein; methyl-accepting chemotaxis protein; chemotaxis phosphatase, CheZ 1408170 6408992 Rpal_1335 Rhodopseudomonas palustris TIE-1 chemotaxis phosphatase, CheZ YP_001990350.1 1407379 R 395960 CDS YP_001990351.1 192289746 6408993 1408471..1409259 1 NC_011004.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: nha:Nham_3192 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 1409259 6408993 Rpal_1336 Rhodopseudomonas palustris TIE-1 ErfK/YbiS/YcfS/YnhG family protein YP_001990351.1 1408471 D 395960 CDS YP_001990352.1 192289747 6408994 complement(1409347..1410201) 1 NC_011004.1 KEGG: bja:blr7528 hypothetical protein; periplasmic ligand-binding sensor protein 1410201 6408994 Rpal_1337 Rhodopseudomonas palustris TIE-1 periplasmic ligand-binding sensor protein YP_001990352.1 1409347 R 395960 CDS YP_001990353.1 192289748 6408995 complement(1410317..1411210) 1 NC_011004.1 PFAM: YdjC family protein; KEGG: nha:Nham_3190 YdjC-like protein; hypothetical protein 1411210 6408995 Rpal_1338 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990353.1 1410317 R 395960 CDS YP_001990354.1 192289749 6408996 complement(1411207..1412250) 1 NC_011004.1 PFAM: glycosyl transferase family 2; KEGG: bja:blr7526 probable glycosyl transferase; family 2 glycosyl transferase 1412250 6408996 Rpal_1339 Rhodopseudomonas palustris TIE-1 family 2 glycosyl transferase YP_001990354.1 1411207 R 395960 CDS YP_001990355.1 192289750 6408997 complement(1412344..1413321) 1 NC_011004.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 1413321 hisG 6408997 hisG Rhodopseudomonas palustris TIE-1 ATP phosphoribosyltransferase YP_001990355.1 1412344 R 395960 CDS YP_001990356.1 192289751 6408998 complement(1413318..1414466) 1 NC_011004.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 1414466 hisZ 6408998 hisZ Rhodopseudomonas palustris TIE-1 ATP phosphoribosyltransferase regulatory subunit YP_001990356.1 1413318 R 395960 CDS YP_001990357.1 192289752 6408999 complement(1414611..1415366) 1 NC_011004.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1415366 6408999 Rpal_1342 Rhodopseudomonas palustris TIE-1 16S ribosomal RNA methyltransferase RsmE YP_001990357.1 1414611 R 395960 CDS YP_001990358.1 192289753 6409000 1415558..1416274 1 NC_011004.1 KEGG: bja:bll7522 hypothetical protein; hypothetical protein 1416274 6409000 Rpal_1343 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990358.1 1415558 D 395960 CDS YP_001990359.1 192289754 6409001 1416271..1417221 1 NC_011004.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase 1417221 ubiA 6409001 ubiA Rhodopseudomonas palustris TIE-1 4-hydroxybenzoate polyprenyltransferase YP_001990359.1 1416271 D 395960 CDS YP_001990360.1 192289755 6409002 complement(1417258..1417782) 1 NC_011004.1 KEGG: bra:BRADO6101 hypothetical protein; hypothetical protein 1417782 6409002 Rpal_1345 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990360.1 1417258 R 395960 CDS YP_001990361.1 192289756 6409003 1418082..1419479 1 NC_011004.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: bja:bll7519 PmbA/TldD related protein; peptidase U62 modulator of DNA gyrase 1419479 6409003 Rpal_1346 Rhodopseudomonas palustris TIE-1 peptidase U62 modulator of DNA gyrase YP_001990361.1 1418082 D 395960 CDS YP_001990362.1 192289757 6409004 1419466..1420281 1 NC_011004.1 PFAM: inositol monophosphatase; KEGG: nha:Nham_3181 inositol monophosphatase; inositol monophosphatase 1420281 6409004 Rpal_1347 Rhodopseudomonas palustris TIE-1 inositol monophosphatase YP_001990362.1 1419466 D 395960 CDS YP_001990363.1 192289758 6409005 1420319..1420567 1 NC_011004.1 KEGG: nha:Nham_3180 hypothetical protein; hypothetical protein 1420567 6409005 Rpal_1348 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990363.1 1420319 D 395960 CDS YP_001990364.1 192289759 6409006 1420655..1421941 1 NC_011004.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: bja:bll7515 3-deoxy-D-manno-octulosonic acid transferase-like protein; 3-deoxy-D-manno-octulosonic-acid transferase 1421941 6409006 Rpal_1349 Rhodopseudomonas palustris TIE-1 3-deoxy-D-manno-octulosonic-acid transferase YP_001990364.1 1420655 D 395960 CDS YP_001990365.1 192289760 6409007 1421934..1422956 1 NC_011004.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1422956 lpxK 6409007 lpxK Rhodopseudomonas palustris TIE-1 tetraacyldisaccharide 4'-kinase YP_001990365.1 1421934 D 395960 CDS YP_001990366.1 192289761 6409008 complement(1422966..1423193) 1 NC_011004.1 KEGG: bja:bsr7510 hypothetical protein; hypothetical protein 1423193 6409008 Rpal_1351 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990366.1 1422966 R 395960 CDS YP_001990367.1 192289762 6409009 complement(1423340..1424953) 1 NC_011004.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1424953 xseA 6409009 xseA Rhodopseudomonas palustris TIE-1 exodeoxyribonuclease VII large subunit YP_001990367.1 1423340 R 395960 CDS YP_001990368.1 192289763 6409010 1425191..1426474 1 NC_011004.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1426474 6409010 Rpal_1353 Rhodopseudomonas palustris TIE-1 phosphoribosylamine--glycine ligase YP_001990368.1 1425191 D 395960 CDS YP_001990369.1 192289764 6409011 1426638..1427546 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: bja:bll7497 haloacetate dehalogenase; alpha/beta hydrolase fold protein 1427546 6409011 Rpal_1354 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001990369.1 1426638 D 395960 CDS YP_001990370.1 192289765 6409012 complement(1427530..1427976) 1 NC_011004.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: nha:Nham_3172 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 1427976 6409012 Rpal_1355 Rhodopseudomonas palustris TIE-1 zinc-binding CMP/dCMP deaminase YP_001990370.1 1427530 R 395960 CDS YP_001990371.1 192289766 6409013 1428142..1430352 1 NC_011004.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: nha:Nham_3171 pseudouridine synthase, Rsu; RNA-binding S4 domain-containing protein 1430352 6409013 Rpal_1356 Rhodopseudomonas palustris TIE-1 RNA-binding S4 domain-containing protein YP_001990371.1 1428142 D 395960 CDS YP_001990372.1 192289767 6409014 1430591..1431157 1 NC_011004.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase KEGG: bja:bll7494 hypothetical protein; methyltransferase 1431157 6409014 Rpal_1357 Rhodopseudomonas palustris TIE-1 methyltransferase YP_001990372.1 1430591 D 395960 CDS YP_001990373.1 192289768 6409015 complement(1431361..1432383) 1 NC_011004.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1432383 6409015 Rpal_1358 Rhodopseudomonas palustris TIE-1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_001990373.1 1431361 R 395960 CDS YP_001990374.1 192289769 6409016 complement(1432383..1432850) 1 NC_011004.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: nha:Nham_3143 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE protein 1432850 6409016 Rpal_1359 Rhodopseudomonas palustris TIE-1 molybdopterin biosynthesis MoaE protein YP_001990374.1 1432383 R 395960 CDS YP_001990375.1 192289770 6409017 complement(1432877..1433128) 1 NC_011004.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: bbt:BBta_1725 molybdenum cofactor biosynthesis protein D; molybdopterin converting factor subunit 1 1433128 6409017 Rpal_1360 Rhodopseudomonas palustris TIE-1 molybdopterin converting factor subunit 1 YP_001990375.1 1432877 R 395960 CDS YP_001990376.1 192289771 6409018 complement(1433125..1433751) 1 NC_011004.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: nwi:Nwi_2525 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1433751 6409018 Rpal_1361 Rhodopseudomonas palustris TIE-1 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_001990376.1 1433125 R 395960 CDS YP_001990377.1 192289772 6409019 complement(1433891..1436005) 1 NC_011004.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1436005 uvrC 6409019 uvrC Rhodopseudomonas palustris TIE-1 excinuclease ABC subunit C YP_001990377.1 1433891 R 395960 CDS YP_001990378.1 192289773 6409020 1436316..1436939 1 NC_011004.1 KEGG: nha:Nham_3147 outer-membrane immunogenic protein precursor; outer-membrane immunogenic protein 1436939 6409020 Rpal_1363 Rhodopseudomonas palustris TIE-1 outer-membrane immunogenic protein YP_001990378.1 1436316 D 395960 CDS YP_001990379.1 192289774 6409021 complement(1437358..1437573) 1 NC_011004.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bra:BRADO6053 cold shock protein, DNA binding; cold-shock DNA-binding domain-containing protein 1437573 6409021 Rpal_1364 Rhodopseudomonas palustris TIE-1 cold-shock DNA-binding domain-containing protein YP_001990379.1 1437358 R 395960 CDS YP_001990380.1 192289775 6409022 complement(1437847..1438704) 1 NC_011004.1 PFAM: protein of unknown function DUF519; KEGG: nwi:Nwi_2528 protein of unknown function DUF519; hypothetical protein 1438704 6409022 Rpal_1365 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990380.1 1437847 R 395960 CDS YP_001990381.1 192289776 6409023 1438998..1439393 1 NC_011004.1 PFAM: response regulator receiver; KEGG: nha:Nham_3160 response regulator receiver domain protein (CheY-like); response regulator receiver protein 1439393 6409023 Rpal_1366 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001990381.1 1438998 D 395960 CDS YP_001990382.1 192289777 6409024 complement(1439478..1439873) 1 NC_011004.1 KEGG: bja:bll7455 hypothetical protein; hypothetical protein 1439873 6409024 Rpal_1367 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990382.1 1439478 R 395960 CDS YP_001990383.1 192289778 6409025 complement(1440042..1440245) 1 NC_011004.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: bbt:BBta_1741 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 1440245 6409025 Rpal_1368 Rhodopseudomonas palustris TIE-1 4-oxalocrotonate tautomerase YP_001990383.1 1440042 R 395960 CDS YP_001990384.1 192289779 6409026 complement(1440384..1441913) 1 NC_011004.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1441913 hisS 6409026 hisS Rhodopseudomonas palustris TIE-1 histidyl-tRNA synthetase YP_001990384.1 1440384 R 395960 CDS YP_001990385.1 192289780 6409027 1442128..1443474 1 NC_011004.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 1443474 6409027 Rpal_1370 Rhodopseudomonas palustris TIE-1 beta alanine--pyruvate transaminase YP_001990385.1 1442128 D 395960 CDS YP_001990386.1 192289781 6409028 1443571..1445136 1 NC_011004.1 PFAM: EAL domain protein; KEGG: bra:BRADO6063 conserved hypothetical protein; signal peptide; EAL domain; diguanylate phosphodiesterase 1445136 6409028 Rpal_1371 Rhodopseudomonas palustris TIE-1 diguanylate phosphodiesterase YP_001990386.1 1443571 D 395960 CDS YP_001990387.1 192289782 6409029 1445149..1446003 1 NC_011004.1 TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:blr7478 hypothetical protein; HAD family hydrolase 1446003 6409029 Rpal_1372 Rhodopseudomonas palustris TIE-1 HAD family hydrolase YP_001990387.1 1445149 D 395960 CDS YP_001990388.1 192289783 6409030 complement(1446035..1448098) 1 NC_011004.1 KEGG: bra:BRADO1961 hypothetical protein; hypothetical protein 1448098 6409030 Rpal_1373 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990388.1 1446035 R 395960 CDS YP_001990389.1 192289784 6409031 complement(1448265..1451090) 1 NC_011004.1 TIGRFAM: conserved hypothetical membrane protein; KEGG: nha:Nham_3253 double-transmembrane region-like; hypothetical protein 1451090 6409031 Rpal_1374 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990389.1 1448265 R 395960 CDS YP_001990390.1 192289785 6409032 complement(1451087..1452019) 1 NC_011004.1 KEGG: bbt:BBta_2270 hypothetical protein; hypothetical protein 1452019 6409032 Rpal_1375 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990390.1 1451087 R 395960 CDS YP_001990391.1 192289786 6409033 complement(1452019..1453023) 1 NC_011004.1 PFAM: ATPase AAA; ATPase AAA; KEGG: bra:BRADO1964 MoxR family protein; ATPase AAA 1453023 6409033 Rpal_1376 Rhodopseudomonas palustris TIE-1 ATPase AAA YP_001990391.1 1452019 R 395960 CDS YP_001990392.1 192289787 6409034 1453257..1453868 1 NC_011004.1 PFAM: protein of unknown function DUF1285; KEGG: bja:blr2466 hypothetical protein; hypothetical protein 1453868 6409034 Rpal_1377 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990392.1 1453257 D 395960 CDS YP_001990393.1 192289788 6409035 1453865..1454542 1 NC_011004.1 PFAM: NUDIX hydrolase; KEGG: bra:BRADO1966 NUDIX hydrolase; NUDIX hydrolase 1454542 6409035 Rpal_1378 Rhodopseudomonas palustris TIE-1 NUDIX hydrolase YP_001990393.1 1453865 D 395960 CDS YP_001990394.1 192289789 6409036 1454539..1454802 1 NC_011004.1 KEGG: bbt:BBta_2274 hypothetical protein; hypothetical protein 1454802 6409036 Rpal_1379 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990394.1 1454539 D 395960 CDS YP_001990395.1 192289790 6409037 1454799..1456055 1 NC_011004.1 PFAM: polynucleotide adenylyltransferase region; KEGG: nha:Nham_3247 polynucleotide adenylyltransferase region; polynucleotide adenylyltransferase 1456055 6409037 Rpal_1380 Rhodopseudomonas palustris TIE-1 polynucleotide adenylyltransferase YP_001990395.1 1454799 D 395960 CDS YP_001990396.1 192289791 6409038 complement(1456185..1456412) 1 NC_011004.1 KEGG: bja:bsl2479 hypothetical protein; hypothetical protein 1456412 6409038 Rpal_1381 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990396.1 1456185 R 395960 CDS YP_001990397.1 192289792 6409039 complement(1456490..1457122) 1 NC_011004.1 KEGG: nwi:Nwi_2619 hypothetical protein; hypothetical protein 1457122 6409039 Rpal_1382 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990397.1 1456490 R 395960 CDS YP_001990398.1 192289793 6409040 complement(1457133..1457588) 1 NC_011004.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: nwi:Nwi_2618 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 1457588 6409040 Rpal_1383 Rhodopseudomonas palustris TIE-1 tRNA/rRNA methyltransferase SpoU YP_001990398.1 1457133 R 395960 CDS YP_001990399.1 192289794 6409041 1457865..1458392 1 NC_011004.1 TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: bja:blr2485 Rieske iron-sulfur protein; ubiquinol-cytochrome C reductase, iron-sulfur subunit 1458392 6409041 Rpal_1384 Rhodopseudomonas palustris TIE-1 ubiquinol-cytochrome C reductase, iron-sulfur subunit YP_001990399.1 1457865 D 395960 CDS YP_001990400.1 192289795 6409042 1458433..1460499 1 NC_011004.1 PFAM: cytochrome C1; cytochrome b/b6 domain; KEGG: bbt:BBta_2301 cytochrome b/c1; cytochrome C1 1460499 6409042 Rpal_1385 Rhodopseudomonas palustris TIE-1 cytochrome C1 YP_001990400.1 1458433 D 395960 CDS YP_001990401.1 192289796 6409043 1460658..1461332 1 NC_011004.1 PFAM: dienelactone hydrolase; KEGG: bja:blr2487 hypothetical protein; carboxymethylenebutenolidase 1461332 6409043 Rpal_1386 Rhodopseudomonas palustris TIE-1 carboxymethylenebutenolidase YP_001990401.1 1460658 D 395960 CDS YP_001990402.1 192289797 6409044 1461423..1461641 1 NC_011004.1 KEGG: bbt:BBta_2461 hypothetical protein; hypothetical protein 1461641 6409044 Rpal_1387 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990402.1 1461423 D 395960 CDS YP_001990403.1 192289798 6409045 complement(1461815..1462591) 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_2462 short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 1462591 6409045 Rpal_1388 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001990403.1 1461815 R 395960 CDS YP_001990404.1 192289799 6409046 complement(1462588..1463226) 1 NC_011004.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1463226 6409046 Rpal_1389 Rhodopseudomonas palustris TIE-1 pyridoxamine 5'-phosphate oxidase YP_001990404.1 1462588 R 395960 CDS YP_001990405.1 192289800 6409047 1463350..1463760 1 NC_011004.1 KEGG: nha:Nham_0766 hypothetical protein; hypothetical protein 1463760 6409047 Rpal_1390 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990405.1 1463350 D 395960 CDS YP_001990406.1 192289801 6409048 1463880..1464848 1 NC_011004.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: bbt:BBta_2465 heat shock (DnaJ-kile); heat shock protein DnaJ domain-containing protein 1464848 6409048 Rpal_1391 Rhodopseudomonas palustris TIE-1 heat shock protein DnaJ domain-containing protein YP_001990406.1 1463880 D 395960 CDS YP_001990407.1 192289802 6409049 1465247..1466068 1 NC_011004.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 1466068 6409049 Rpal_1392 Rhodopseudomonas palustris TIE-1 enoyl-(acyl carrier protein) reductase YP_001990407.1 1465247 D 395960 CDS YP_001990408.1 192289803 6409050 1466177..1466770 1 NC_011004.1 PFAM: phosphoglycerate mutase; KEGG: bja:blr2630 phosphoglycerate mutase; phosphoglycerate mutase 1466770 6409050 Rpal_1393 Rhodopseudomonas palustris TIE-1 phosphoglycerate mutase YP_001990408.1 1466177 D 395960 CDS YP_001990409.1 192289804 6409051 1466905..1467993 1 NC_011004.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1467993 6409051 Rpal_1394 Rhodopseudomonas palustris TIE-1 chorismate synthase YP_001990409.1 1466905 D 395960 CDS YP_001990410.1 192289805 6409052 1468097..1469296 1 NC_011004.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bja:blr2632 adenylate cyclase protein; adenylate/guanylate cyclase 1469296 6409052 Rpal_1395 Rhodopseudomonas palustris TIE-1 adenylate/guanylate cyclase YP_001990410.1 1468097 D 395960 CDS YP_001990411.1 192289806 6409053 complement(1469472..1469783) 1 NC_011004.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor 1469783 clpS 6409053 clpS Rhodopseudomonas palustris TIE-1 ATP-dependent Clp protease adaptor YP_001990411.1 1469472 R 395960 CDS YP_001990412.1 192289807 6409054 1470029..1470865 1 NC_011004.1 PFAM: protein of unknown function DUF1194; KEGG: bbt:BBta_2473 exported protein of unknown function; hypothetical protein 1470865 6409054 Rpal_1397 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990412.1 1470029 D 395960 CDS YP_001990413.1 192289808 6409055 complement(1470990..1472141) 1 NC_011004.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: rru:Rru_A0930 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 1472141 6409055 Rpal_1398 Rhodopseudomonas palustris TIE-1 iron-containing alcohol dehydrogenase YP_001990413.1 1470990 R 395960 CDS YP_001990414.1 192289809 6409056 complement(1472331..1473851) 1 NC_011004.1 PFAM: Aldehyde Dehydrogenase_; KEGG: mlo:mll6639 aldehyde dehydrogenase; aldehyde dehydrogenase 1473851 6409056 Rpal_1399 Rhodopseudomonas palustris TIE-1 aldehyde dehydrogenase YP_001990414.1 1472331 R 395960 CDS YP_001990415.1 192289810 6409057 1474090..1475979 1 NC_011004.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase AAA; SMART: ATPase AAA; KEGG: xau:Xaut_0367 GAF modulated sigma54 specific transcriptional regulator, fis family; Fis family transcriptional regulator 1475979 6409057 Rpal_1400 Rhodopseudomonas palustris TIE-1 Fis family transcriptional regulator YP_001990415.1 1474090 D 395960 CDS YP_001990416.1 192289811 6409058 complement(1476020..1477423) 1 NC_011004.1 PFAM: carotenoid oxygenase; KEGG: bja:blr5790 lignostilbene-alpha,beta-dioxygenase; carotenoid oxygenase 1477423 6409058 Rpal_1401 Rhodopseudomonas palustris TIE-1 carotenoid oxygenase YP_001990416.1 1476020 R 395960 CDS YP_001990417.1 192289812 6409059 complement(1477465..1478844) 1 NC_011004.1 KEGG: hha:Hhal_0248 hypothetical protein; hypothetical protein 1478844 6409059 Rpal_1402 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990417.1 1477465 R 395960 CDS YP_001990418.1 192289813 6409060 complement(1478837..1479946) 1 NC_011004.1 KEGG: hha:Hhal_0249 hypothetical protein; hypothetical protein 1479946 6409060 Rpal_1403 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990418.1 1478837 R 395960 CDS YP_001990419.1 192289814 6409061 complement(1479965..1481017) 1 NC_011004.1 KEGG: hha:Hhal_0250 hypothetical protein; hypothetical protein 1481017 6409061 Rpal_1404 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990419.1 1479965 R 395960 CDS YP_001990420.1 192289815 6409062 complement(1481191..1482186) 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: bra:BRADO1608 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1482186 6409062 Rpal_1405 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001990420.1 1481191 R 395960 CDS YP_001990421.1 192289816 6409063 complement(1482406..1483911) 1 NC_011004.1 PFAM: MlrC domain protein; Microcystin LR degradation protein MlrC-like; KEGG: bja:blr5601 hypothetical protein; MlrC domain-containing protein 1483911 6409063 Rpal_1406 Rhodopseudomonas palustris TIE-1 MlrC domain-containing protein YP_001990421.1 1482406 R 395960 CDS YP_001990422.1 192289817 6409064 complement(1484047..1485699) 1 NC_011004.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_5258 ABC transporter (ATP-binding protein); ABC transporter 1485699 6409064 Rpal_1407 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990422.1 1484047 R 395960 CDS YP_001990423.1 192289818 6409065 complement(1485808..1486698) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO2920 ABC transporter (permease protein); membrane protein; ABC transporter inner membrane protein 1486698 6409065 Rpal_1408 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001990423.1 1485808 R 395960 CDS YP_001990424.1 192289819 6409066 complement(1486712..1487653) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_5256 ABC transporter (permease protein); ABC transporter inner membrane protein 1487653 6409066 Rpal_1409 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001990424.1 1486712 R 395960 CDS YP_001990425.1 192289820 6409067 complement(1487818..1488948) 1 NC_011004.1 catalyzes the release of C-terminal glutamate residues from N-acylating moieties; carboxypeptidase 1488948 6409067 Rpal_1410 Rhodopseudomonas palustris TIE-1 carboxypeptidase YP_001990425.1 1487818 R 395960 CDS YP_001990426.1 192289821 6409068 1489200..1490813 1 NC_011004.1 PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_5254 ABC transporter (substrate-binding protein); ABC transporter substrate-binding protein 1490813 6409068 Rpal_1411 Rhodopseudomonas palustris TIE-1 ABC transporter substrate-binding protein YP_001990426.1 1489200 D 395960 CDS YP_001990427.1 192289822 6409069 complement(1491353..1491988) 1 NC_011004.1 KEGG: sma:SAV6022 dihydrolipoamide S-succinyltransferase; hypothetical protein 1491988 6409069 Rpal_1412 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990427.1 1491353 R 395960 CDS YP_001990428.1 192289823 6409070 1492473..1493489 1 NC_011004.1 PFAM: CBS domain containing protein; KEGG: bbt:BBta_3002 signal-transduction protein with CBS domains; signal-transduction protein with CBS domains 1493489 6409070 Rpal_1413 Rhodopseudomonas palustris TIE-1 signal-transduction protein with CBS domains YP_001990428.1 1492473 D 395960 CDS YP_001990429.1 192289824 6409071 complement(1493540..1494331) 1 NC_011004.1 hypothetical protein 1494331 6409071 Rpal_1414 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990429.1 1493540 R 395960 CDS YP_001990430.1 192289825 6409072 complement(1494360..1495292) 1 NC_011004.1 PFAM: CHAD domain containing protein; KEGG: mex:Mext_3081 CHAD domain containing protein; CHAD domain-containing protein 1495292 6409072 Rpal_1415 Rhodopseudomonas palustris TIE-1 CHAD domain-containing protein YP_001990430.1 1494360 R 395960 CDS YP_001990431.1 192289826 6409073 complement(1495399..1495722) 1 NC_011004.1 hypothetical protein 1495722 6409073 Rpal_1416 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990431.1 1495399 R 395960 CDS YP_001990432.1 192289827 6409074 1495991..1497814 1 NC_011004.1 TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: chy:CHY_0121 indolepyruvate ferredoxin oxidoreductase, IorA subunit; indolepyruvate ferredoxin oxidoreductase subunit alpha 1497814 6409074 Rpal_1417 Rhodopseudomonas palustris TIE-1 indolepyruvate ferredoxin oxidoreductase subunit alpha YP_001990432.1 1495991 D 395960 CDS YP_001990433.1 192289828 6409075 1497811..1498755 1 NC_011004.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: swo:Swol_1195 indolepyruvate oxidoreductase subunit beta 2; pyruvate ferredoxin/flavodoxin oxidoreductase 1498755 6409075 Rpal_1418 Rhodopseudomonas palustris TIE-1 pyruvate ferredoxin/flavodoxin oxidoreductase YP_001990433.1 1497811 D 395960 CDS YP_001990434.1 192289829 6409076 1498752..1499915 1 NC_011004.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: pth:PTH_0847 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha 1499915 6409076 Rpal_1419 Rhodopseudomonas palustris TIE-1 2-oxoglutarate ferredoxin oxidoreductase subunit alpha YP_001990434.1 1498752 D 395960 CDS YP_001990435.1 192289830 6409077 1499917..1500747 1 NC_011004.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 1500747 6409077 Rpal_1420 Rhodopseudomonas palustris TIE-1 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_001990435.1 1499917 D 395960 CDS YP_001990436.1 192289831 6409078 1500762..1501322 1 NC_011004.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sat:SYN_02500 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit; pyruvate ferredoxin/flavodoxin oxidoreductase 1501322 6409078 Rpal_1421 Rhodopseudomonas palustris TIE-1 pyruvate ferredoxin/flavodoxin oxidoreductase YP_001990436.1 1500762 D 395960 CDS YP_001990437.1 192289832 6409079 1501346..1502680 1 NC_011004.1 KEGG: mag:amb1245 coenzyme F390 synthetase; phenylacetate--CoA ligase 1502680 6409079 Rpal_1422 Rhodopseudomonas palustris TIE-1 phenylacetate--CoA ligase YP_001990437.1 1501346 D 395960 CDS YP_001990438.1 192289833 6409080 1502890..1503762 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bja:bll7932 ABC transporter permease protein; inner-membrane translocator 1503762 6409080 Rpal_1423 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001990438.1 1502890 D 395960 CDS YP_001990439.1 192289834 6409081 1503765..1504910 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bja:bll7931 ABC transporter permease protein; inner-membrane translocator 1504910 6409081 Rpal_1424 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001990439.1 1503765 D 395960 CDS YP_001990440.1 192289835 6409082 1504907..1505668 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll7930 ABC transporter ATP-binding protein; ABC transporter 1505668 6409082 Rpal_1425 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990440.1 1504907 D 395960 CDS YP_001990441.1 192289836 6409083 1505672..1506421 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll7929 ABC transporter ATP-binding protein; ABC transporter 1506421 6409083 Rpal_1426 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990441.1 1505672 D 395960 CDS YP_001990442.1 192289837 6409084 1506405..1508105 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll7928 fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 1508105 6409084 Rpal_1427 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001990442.1 1506405 D 395960 CDS YP_001990443.1 192289838 6409085 1508145..1509350 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: bja:bll7927 hypothetical protein; extracellular ligand-binding receptor 1509350 6409085 Rpal_1428 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001990443.1 1508145 D 395960 CDS YP_001990444.1 192289839 6409086 complement(1509534..1510730) 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:blr7270 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1510730 6409086 Rpal_1429 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001990444.1 1509534 R 395960 CDS YP_001990445.1 192289840 6409087 complement(1510749..1511885) 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:blr7269 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1511885 6409087 Rpal_1430 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001990445.1 1510749 R 395960 CDS YP_001990446.1 192289841 6409088 complement(1511889..1512737) 1 NC_011004.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1512737 6409088 Rpal_1431 Rhodopseudomonas palustris TIE-1 enoyl-CoA hydratase YP_001990446.1 1511889 R 395960 CDS YP_001990447.1 192289842 6409089 1513089..1513862 1 NC_011004.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: bja:bll7073 biopolymer transport protein; tonB-system energizer ExbB 1513862 6409089 Rpal_1432 Rhodopseudomonas palustris TIE-1 tonB-system energizer ExbB YP_001990447.1 1513089 D 395960 CDS YP_001990448.1 192289843 6409090 1513867..1514304 1 NC_011004.1 TIGRFAM: TonB system transport protein ExbD; PFAM: biopolymer transport protein ExbD/TolR; KEGG: bja:bll7072 biopolymer transport protein; TonB system transport protein ExbD 1514304 6409090 Rpal_1433 Rhodopseudomonas palustris TIE-1 TonB system transport protein ExbD YP_001990448.1 1513867 D 395960 CDS YP_001990449.1 192289844 6409091 1514301..1515173 1 NC_011004.1 TIGRFAM: TonB family protein; KEGG: bja:bll7071 TonB protein; TonB family protein 1515173 6409091 Rpal_1434 Rhodopseudomonas palustris TIE-1 TonB family protein YP_001990449.1 1514301 D 395960 CDS YP_001990450.1 192289845 6409092 complement(1515193..1516704) 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_5258 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1516704 6409092 Rpal_1435 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001990450.1 1515193 R 395960 CDS YP_001990451.1 192289846 6409093 1517035..1518222 1 NC_011004.1 KEGG: nha:Nham_3876 hypothetical protein; hypothetical protein 1518222 6409093 Rpal_1436 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990451.1 1517035 D 395960 CDS YP_001990452.1 192289847 6409094 1518238..1518843 1 NC_011004.1 KEGG: nha:Nham_3877 hypothetical protein; hypothetical protein 1518843 6409094 Rpal_1437 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990452.1 1518238 D 395960 CDS YP_001990453.1 192289848 6409095 1518830..1519222 1 NC_011004.1 PFAM: protein of unknown function DUF1469; KEGG: nha:Nham_3878 protein of unknown function DUF1469; hypothetical protein 1519222 6409095 Rpal_1438 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990453.1 1518830 D 395960 CDS YP_001990454.1 192289849 6409096 1519219..1519920 1 NC_011004.1 KEGG: noc:Noc_1592 hypothetical protein; hypothetical protein 1519920 6409096 Rpal_1439 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990454.1 1519219 D 395960 CDS YP_001990455.1 192289850 6409097 1520112..1521065 1 NC_011004.1 PFAM: ribonuclease BN; KEGG: bja:blr7476 hypothetical protein; ribonuclease BN 1521065 6409097 Rpal_1440 Rhodopseudomonas palustris TIE-1 ribonuclease BN YP_001990455.1 1520112 D 395960 CDS YP_001990456.1 192289851 6409098 complement(1521062..1521988) 1 NC_011004.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bbt:BBta_0652 transcriptional regulatory protein, LuxR family; LuxR family transcriptional regulator 1521988 6409098 Rpal_1441 Rhodopseudomonas palustris TIE-1 LuxR family transcriptional regulator YP_001990456.1 1521062 R 395960 CDS YP_001990457.1 192289852 6409099 complement(1521978..1525346) 1 NC_011004.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bja:bll0966 two-component hybrid sensor and regulator; integral membrane sensor hybrid histidine kinase 1525346 6409099 Rpal_1442 Rhodopseudomonas palustris TIE-1 integral membrane sensor hybrid histidine kinase YP_001990457.1 1521978 R 395960 CDS YP_001990458.1 192289853 6409100 1525603..1526865 1 NC_011004.1 TIGRFAM: urea ABC transporter urea binding protein; KEGG: bja:blr0967 ABC transporter substrate-binding protein; urea ABC transporter substrate-binding protein 1526865 6409100 Rpal_1443 Rhodopseudomonas palustris TIE-1 urea ABC transporter substrate-binding protein YP_001990458.1 1525603 D 395960 CDS YP_001990459.1 192289854 6409101 1527032..1527958 1 NC_011004.1 TIGRFAM: urea ABC transporter permease protein UrtB; PFAM: inner-membrane translocator; KEGG: bja:blr0968 ABC transporter permease protein; urea ABC transporter permease 1527958 6409101 Rpal_1444 Rhodopseudomonas palustris TIE-1 urea ABC transporter permease YP_001990459.1 1527032 D 395960 CDS YP_001990460.1 192289855 6409102 1527973..1529124 1 NC_011004.1 TIGRFAM: urea ABC transporter permease protein UrtC; PFAM: inner-membrane translocator; KEGG: bja:blr0969 ABC transporter permease protein; urea ABC transporter permease 1529124 6409102 Rpal_1445 Rhodopseudomonas palustris TIE-1 urea ABC transporter permease YP_001990460.1 1527973 D 395960 CDS YP_001990461.1 192289856 6409103 1529135..1529890 1 NC_011004.1 TIGRFAM: urea ABC transporter ATP-binding protein UrtD; PFAM: ABC transporter; KEGG: bja:blr0970 ABC transporter ATP-binding protein; urea ABC transporter ATP-binding protein 1529890 6409103 Rpal_1446 Rhodopseudomonas palustris TIE-1 urea ABC transporter ATP-binding protein YP_001990461.1 1529135 D 395960 CDS YP_001990462.1 192289857 6409104 1529901..1530590 1 NC_011004.1 KEGG: bbt:BBta_0658 branched-chain amino acid ABC transporter (ATP-binding protein); TIGRFAM: urea ABC transporter ATP-binding protein UrtE; PFAM: ABC transporter; SMART: ATPase AAA; urea ABC transporter ATP-binding protein 1530590 6409104 Rpal_1447 Rhodopseudomonas palustris TIE-1 urea ABC transporter ATP-binding protein YP_001990462.1 1529901 D 395960 CDS YP_001990463.1 192289858 6409105 1530627..1531856 1 NC_011004.1 PFAM: Acetamidase/formamidase; KEGG: bbt:BBta_0659 formamidase (formamide amidohydrolase); formamidase 1531856 6409105 Rpal_1448 Rhodopseudomonas palustris TIE-1 formamidase YP_001990463.1 1530627 D 395960 CDS YP_001990464.1 192289859 6409106 1532094..1532438 1 NC_011004.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: bbt:BBta_0660 formamidase regulatory protein FmdB; FmdB family regulatory protein 1532438 6409106 Rpal_1449 Rhodopseudomonas palustris TIE-1 FmdB family regulatory protein YP_001990464.1 1532094 D 395960 CDS YP_001990465.1 192289860 6409107 complement(1532553..1533350) 1 NC_011004.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cak:Caul_2743 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase 1533350 6409107 Rpal_1450 Rhodopseudomonas palustris TIE-1 cobalamin 5'-phosphate synthase YP_001990465.1 1532553 R 395960 CDS YP_001990466.1 192289861 6409108 1533629..1533952 1 NC_011004.1 hypothetical protein 1533952 6409108 Rpal_1451 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990466.1 1533629 D 395960 CDS YP_001990467.1 192289862 6409109 1534213..1536957 1 NC_011004.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pde:Pden_5102 ATPase, P-type (transporting), HAD superfamily, subfamily IC; ATPase P 1536957 6409109 Rpal_1452 Rhodopseudomonas palustris TIE-1 ATPase P YP_001990467.1 1534213 D 395960 CDS YP_001990468.1 192289863 6409110 1537046..1537951 1 NC_011004.1 PFAM: UspA domain protein; KEGG: pla:Plav_3480 UspA domain protein; UspA domain-containing protein 1537951 6409110 Rpal_1453 Rhodopseudomonas palustris TIE-1 UspA domain-containing protein YP_001990468.1 1537046 D 395960 CDS YP_001990469.1 192289864 6409111 1538048..1539643 1 NC_011004.1 PFAM: FAD linked oxidase domain protein; KEGG: mtu:Rv3107c possible alkyldihydroxyacetonephosphate synthase AgrS (alkyl-DHAP synthase) (alkylglycerone-phosphate synthase); FAD linked oxidase domain-containing protein 1539643 6409111 Rpal_1454 Rhodopseudomonas palustris TIE-1 FAD linked oxidase domain-containing protein YP_001990469.1 1538048 D 395960 CDS YP_001990470.1 192289865 6409112 complement(1539615..1540079) 1 NC_011004.1 KEGG: bja:blr7780 hypothetical protein; hypothetical protein 1540079 6409112 Rpal_1455 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990470.1 1539615 R 395960 CDS YP_001990471.1 192289866 6409113 1540311..1540586 1 NC_011004.1 PFAM: protein of unknown function DUF1153; KEGG: nha:Nham_0692 protein of unknown function DUF1153; hypothetical protein 1540586 6409113 Rpal_1456 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990471.1 1540311 D 395960 CDS YP_001990472.1 192289867 6409114 1540786..1542402 1 NC_011004.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1542402 fliF 6409114 fliF Rhodopseudomonas palustris TIE-1 flagellar MS-ring protein YP_001990472.1 1540786 D 395960 CDS YP_001990473.1 192289868 6409115 1542409..1543497 1 NC_011004.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1543497 fliG 6409115 fliG Rhodopseudomonas palustris TIE-1 flagellar motor switch protein G YP_001990473.1 1542409 D 395960 CDS YP_001990474.1 192289869 6409116 1543497..1544123 1 NC_011004.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1544123 fliH 6409116 fliH Rhodopseudomonas palustris TIE-1 flagellar assembly protein H YP_001990474.1 1543497 D 395960 CDS YP_001990475.1 192289870 6409117 1544141..1544488 1 NC_011004.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1544488 6409117 Rpal_1460 Rhodopseudomonas palustris TIE-1 flagellar motor switch protein YP_001990475.1 1544141 D 395960 CDS YP_001990476.1 192289871 6409118 1544536..1545915 1 NC_011004.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; SMART: ATPase AAA; KEGG: nha:Nham_0687 two component, sigma54 specific, transcriptional regulator, fis family; Fis family transcriptional regulator 1545915 6409118 Rpal_1461 Rhodopseudomonas palustris TIE-1 Fis family transcriptional regulator YP_001990476.1 1544536 D 395960 CDS YP_001990477.1 192289872 6409119 complement(1546287..1546442) 1 NC_011004.1 KEGG: bbt:BBta_1870 exported protein of unknown function; hypothetical protein 1546442 6409119 Rpal_1462 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990477.1 1546287 R 395960 CDS YP_001990478.1 192289873 6409120 complement(1546497..1546775) 1 NC_011004.1 KEGG: bja:bsl0168 hypothetical protein; hypothetical protein 1546775 6409120 Rpal_1463 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990478.1 1546497 R 395960 CDS YP_001990479.1 192289874 6409121 complement(1546812..1547081) 1 NC_011004.1 KEGG: bja:bsl0170 hypothetical protein; hypothetical protein 1547081 6409121 Rpal_1464 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990479.1 1546812 R 395960 CDS YP_001990480.1 192289875 6409122 1547310..1548137 1 NC_011004.1 PFAM: transglutaminase domain protein; KEGG: bja:bll5557 hypothetical protein; transglutaminase domain-containing protein 1548137 6409122 Rpal_1465 Rhodopseudomonas palustris TIE-1 transglutaminase domain-containing protein YP_001990480.1 1547310 D 395960 CDS YP_001990481.1 192289876 6409123 1548269..1549378 1 NC_011004.1 KEGG: nha:Nham_0686 exodeoxyribonuclease V; exodeoxyribonuclease V 1549378 6409123 Rpal_1466 Rhodopseudomonas palustris TIE-1 exodeoxyribonuclease V YP_001990481.1 1548269 D 395960 CDS YP_001990482.1 192289877 6409124 complement(1549468..1550163) 1 NC_011004.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bra:BRADO1328 S-adenosyl-L-methionine-dependent methyltransferase; type 11 methyltransferase 1550163 6409124 Rpal_1467 Rhodopseudomonas palustris TIE-1 type 11 methyltransferase YP_001990482.1 1549468 R 395960 CDS YP_001990483.1 192289878 6409125 1550446..1550973 1 NC_011004.1 PFAM: Ferritin Dps family protein; KEGG: bra:BRADO1329 DNA-binding stress protein (oxydative damage protectant); ferritin Dps family protein 1550973 6409125 Rpal_1468 Rhodopseudomonas palustris TIE-1 ferritin Dps family protein YP_001990483.1 1550446 D 395960 CDS YP_001990484.1 192289879 6409126 complement(1551233..1551757) 1 NC_011004.1 KEGG: bra:BRADO1333 hypothetical protein; hypothetical protein 1551757 6409126 Rpal_1469 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990484.1 1551233 R 395960 CDS YP_001990485.1 192289880 6409127 complement(1551990..1553183) 1 NC_011004.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1553183 6409127 Rpal_1470 Rhodopseudomonas palustris TIE-1 carbamoyl phosphate synthase small subunit YP_001990485.1 1551990 R 395960 CDS YP_001990486.1 192289881 6409128 1553332..1554036 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; Thioesterase; KEGG: bja:bll7370 probable hydrolase; alpha/beta hydrolase fold protein 1554036 6409128 Rpal_1471 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001990486.1 1553332 D 395960 CDS YP_001990487.1 192289882 6409129 1554194..1554649 1 NC_011004.1 KEGG: nha:Nham_2870 GatB/YqeY; GatB/YqeY 1554649 6409129 Rpal_1472 Rhodopseudomonas palustris TIE-1 GatB/YqeY YP_001990487.1 1554194 D 395960 CDS YP_001990488.1 192289883 6409130 1555234..1556082 1 NC_011004.1 KEGG: bja:bll7362 hypothetical protein; hypothetical protein 1556082 6409130 Rpal_1473 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990488.1 1555234 D 395960 CDS YP_001990489.1 192289884 6409131 complement(1556196..1556669) 1 NC_011004.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bja:blr7360 hypothetical protein; Activator of Hsp90 ATPase 1 family protein 1556669 6409131 Rpal_1474 Rhodopseudomonas palustris TIE-1 Activator of Hsp90 ATPase 1 family protein YP_001990489.1 1556196 R 395960 CDS YP_001990490.1 192289885 6409132 complement(1556662..1556976) 1 NC_011004.1 PFAM: regulatory protein ArsR; KEGG: bja:blr7359 transcriptional regulatory protein; ArsR family transcriptional regulator 1556976 6409132 Rpal_1475 Rhodopseudomonas palustris TIE-1 ArsR family transcriptional regulator YP_001990490.1 1556662 R 395960 CDS YP_001990491.1 192289886 6409133 1557105..1557722 1 NC_011004.1 PFAM: lysine exporter; KEGG: bja:bll7356 efflux protein; lysine exporter 1557722 6409133 Rpal_1476 Rhodopseudomonas palustris TIE-1 lysine exporter YP_001990491.1 1557105 D 395960 CDS YP_001990492.1 192289887 6409134 complement(1557848..1558645) 1 NC_011004.1 PFAM: N-formylglutamate amidohydrolase; KEGG: nwi:Nwi_2443 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 1558645 6409134 Rpal_1477 Rhodopseudomonas palustris TIE-1 N-formylglutamate amidohydrolase YP_001990492.1 1557848 R 395960 CDS YP_001990493.1 192289888 6409135 1558807..1559214 1 NC_011004.1 PFAM: AIG2 family protein; KEGG: bja:bll7352 hypothetical protein; AIG2 family protein 1559214 6409135 Rpal_1478 Rhodopseudomonas palustris TIE-1 AIG2 family protein YP_001990493.1 1558807 D 395960 CDS YP_001990494.1 192289889 6409136 complement(1559231..1559473) 1 NC_011004.1 hypothetical protein 1559473 6409136 Rpal_1479 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990494.1 1559231 R 395960 CDS YP_001990495.1 192289890 6409137 1559930..1561939 1 NC_011004.1 synthesizes RNA primers at the replication forks; DNA primase 1561939 dnaG 6409137 dnaG Rhodopseudomonas palustris TIE-1 DNA primase YP_001990495.1 1559930 D 395960 CDS YP_001990496.1 192289891 6409138 1562199..1564295 1 NC_011004.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 1564295 6409138 Rpal_1481 Rhodopseudomonas palustris TIE-1 RNA polymerase sigma factor RpoD YP_001990496.1 1562199 D 395960 CDS YP_001990497.1 192289892 6409139 1564368..1564646 1 NC_011004.1 KEGG: ccr:CC_2514 hypothetical protein; hypothetical protein 1564646 6409139 Rpal_1482 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990497.1 1564368 D 395960 CDS YP_001990498.1 192289893 6409141 complement(1565047..1565370) 1 NC_011004.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: azc:AZC_3257 plasmid maintenance system antidote protein; XRE family transcriptional regulator 1565370 6409141 Rpal_1484 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001990498.1 1565047 R 395960 CDS YP_001990499.1 192289894 6409142 complement(1565380..1565670) 1 NC_011004.1 PFAM: plasmid maintenance system killer; KEGG: rru:Rru_A2778 plasmid maintenance system killer; plasmid maintenance system killer protein 1565670 6409142 Rpal_1485 Rhodopseudomonas palustris TIE-1 plasmid maintenance system killer protein YP_001990499.1 1565380 R 395960 CDS YP_001990500.1 192289895 6409144 1569014..1570777 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: maq:Maqu_3791 diguanylate cyclase; diguanylate cyclase 1570777 6409144 Rpal_1487 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001990500.1 1569014 D 395960 CDS YP_001990501.1 192289896 6409145 complement(1571029..1571880) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_0442 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1571880 6409145 Rpal_1488 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001990501.1 1571029 R 395960 CDS YP_001990502.1 192289897 6409146 complement(1572069..1573184) 1 NC_011004.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1573184 6409146 Rpal_1489 Rhodopseudomonas palustris TIE-1 3-oxoacyl-ACP synthase YP_001990502.1 1572069 R 395960 CDS YP_001990503.1 192289898 6409147 1573482..1573823 1 NC_011004.1 KEGG: reh:H16_A1583 hypothetical protein; hypothetical protein 1573823 6409147 Rpal_1490 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990503.1 1573482 D 395960 CDS YP_001990504.1 192289899 6409148 1574095..1574658 1 NC_011004.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bbt:BBta_4318 intracellular proteinase; Pfpi family intracellular protease 1574658 6409148 Rpal_1491 Rhodopseudomonas palustris TIE-1 Pfpi family intracellular protease YP_001990504.1 1574095 D 395960 CDS YP_001990505.1 192289900 6409149 complement(1574848..1575219) 1 NC_011004.1 KEGG: bra:BRADO1363 hypothetical protein; hypothetical protein 1575219 6409149 Rpal_1492 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990505.1 1574848 R 395960 CDS YP_001990506.1 192289901 6409150 1575446..1576264 1 NC_011004.1 TIGRFAM: lytic murein transglycosylase; KEGG: nha:Nham_2862 lytic murein transglycosylase; lytic murein transglycosylase 1576264 6409150 Rpal_1493 Rhodopseudomonas palustris TIE-1 lytic murein transglycosylase YP_001990506.1 1575446 D 395960 CDS YP_001990507.1 192289902 6409151 complement(1576295..1577008) 1 NC_011004.1 PFAM: flagellar hook capping protein; KEGG: nha:Nham_0693 flagellar hook capping protein; flagellar hook capping protein 1577008 6409151 Rpal_1494 Rhodopseudomonas palustris TIE-1 flagellar hook capping protein YP_001990507.1 1576295 R 395960 CDS YP_001990508.1 192289903 6409152 complement(1577021..1578619) 1 NC_011004.1 PFAM: flagellar hook-length control protein; KEGG: bja:blr6996 hypothetical protein; flagellar hook-length control protein 1578619 6409152 Rpal_1495 Rhodopseudomonas palustris TIE-1 flagellar hook-length control protein YP_001990508.1 1577021 R 395960 CDS YP_001990509.1 192289904 6409153 1578920..1580125 1 NC_011004.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1580125 mnmA 6409153 mnmA Rhodopseudomonas palustris TIE-1 tRNA-specific 2-thiouridylase MnmA YP_001990509.1 1578920 D 395960 CDS YP_001990510.1 192289905 6409154 1580145..1580783 1 NC_011004.1 PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: bja:bll6994 phosphatidylethanolamine N-methyltransferase; phosphatidylethanolamine N-methyltransferase 1580783 6409154 Rpal_1497 Rhodopseudomonas palustris TIE-1 phosphatidylethanolamine N-methyltransferase YP_001990510.1 1580145 D 395960 CDS YP_001990511.1 192289906 6409155 1580829..1581167 1 NC_011004.1 KEGG: bra:BRADO5892 conserved hypothetical protein; signal peptide; hypothetical protein 1581167 6409155 Rpal_1498 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990511.1 1580829 D 395960 CDS YP_001990512.1 192289907 6409157 complement(1581477..1581839) 1 NC_011004.1 hypothetical protein 1581839 6409157 Rpal_1499 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990512.1 1581477 R 395960 CDS YP_001990513.1 192289908 6409158 1581951..1582931 1 NC_011004.1 PFAM: integrase family protein; KEGG: acr:Acry_3449 hypothetical protein; integrase family protein 1582931 6409158 Rpal_1500 Rhodopseudomonas palustris TIE-1 integrase family protein YP_001990513.1 1581951 D 395960 CDS YP_001990514.1 192289909 6409159 1583161..1584702 1 NC_011004.1 PFAM: RNA methylase; N-6 DNA methylase; KEGG: rba:RB11642 type I restriction enzym, M protein; N-6 DNA methylase 1584702 6409159 Rpal_1501 Rhodopseudomonas palustris TIE-1 N-6 DNA methylase YP_001990514.1 1583161 D 395960 CDS YP_001990515.1 192289910 6409160 1584699..1585880 1 NC_011004.1 PFAM: restriction modification system DNA specificity domain; KEGG: gur:Gura_2097 restriction modification system DNA specificity domain; restriction modification system DNA specificity domain-containing protein 1585880 6409160 Rpal_1502 Rhodopseudomonas palustris TIE-1 restriction modification system DNA specificity domain-containing protein YP_001990515.1 1584699 D 395960 CDS YP_001990516.1 192289911 6409161 1585990..1586523 1 NC_011004.1 KEGG: mmr:Mmar10_0163 hypothetical protein; hypothetical protein 1586523 6409161 Rpal_1503 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990516.1 1585990 D 395960 CDS YP_001990517.1 192289912 6409163 complement(1589993..1590229) 1 NC_011004.1 PFAM: helix-turn-helix domain protein; KEGG: rle:pRL110239 hypothetical protein; XRE family transcriptional regulator 1590229 6409163 Rpal_1506 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001990517.1 1589993 R 395960 CDS YP_001990518.1 192289913 6409164 1590314..1591204 1 NC_011004.1 hypothetical protein 1591204 6409164 Rpal_1507 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990518.1 1590314 D 395960 CDS YP_001990519.1 192289914 6409165 1591305..1591862 1 NC_011004.1 KEGG: bja:blr7722 hypothetical protein; hypothetical protein 1591862 6409165 Rpal_1508 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990519.1 1591305 D 395960 CDS YP_001990520.1 192289915 6409166 1591862..1592746 1 NC_011004.1 PFAM: metallophosphoesterase; KEGG: nha:Nham_3779 metallophosphoesterase; metallophosphoesterase 1592746 6409166 Rpal_1509 Rhodopseudomonas palustris TIE-1 metallophosphoesterase YP_001990520.1 1591862 D 395960 CDS YP_001990521.1 192289916 6409167 1592780..1593634 1 NC_011004.1 KEGG: nha:Nham_3781 ATPase AAA; ATPase AAA 1593634 6409167 Rpal_1510 Rhodopseudomonas palustris TIE-1 ATPase AAA YP_001990521.1 1592780 D 395960 CDS YP_001990522.1 192289917 6409168 1593627..1594304 1 NC_011004.1 PFAM: ATPase AAA; SMART: ATPase AAA; KEGG: nha:Nham_3781 ATPase AAA; ATPase AAA 1594304 6409168 Rpal_1511 Rhodopseudomonas palustris TIE-1 ATPase AAA YP_001990522.1 1593627 D 395960 CDS YP_001990523.1 192289918 6409171 1595621..1596736 1 NC_011004.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mes:Meso_1173 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1596736 6409171 Rpal_1514 Rhodopseudomonas palustris TIE-1 NADH:flavin oxidoreductase YP_001990523.1 1595621 D 395960 CDS YP_001990524.1 192289919 6409172 1597021..1597353 1 NC_011004.1 PFAM: carboxymuconolactone decarboxylase; KEGG: bvi:Bcep1808_4940 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 1597353 6409172 Rpal_1515 Rhodopseudomonas palustris TIE-1 carboxymuconolactone decarboxylase YP_001990524.1 1597021 D 395960 CDS YP_001990525.1 192289920 6409173 1597583..1598125 1 NC_011004.1 KEGG: azc:AZC_1312 hypothetical protein; hypothetical protein 1598125 6409173 Rpal_1516 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990525.1 1597583 D 395960 CDS YP_001990526.1 192289921 6409174 1598526..1600424 1 NC_011004.1 KEGG: bja:blr0257 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 1600424 6409174 Rpal_1517 Rhodopseudomonas palustris TIE-1 multi-sensor signal transduction histidine kinase YP_001990526.1 1598526 D 395960 CDS YP_001990527.1 192289922 6409175 1600480..1600911 1 NC_011004.1 PFAM: response regulator receiver; KEGG: aba:Acid345_3714 response regulator receiver protein; response regulator receiver protein 1600911 6409175 Rpal_1518 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001990527.1 1600480 D 395960 CDS YP_001990528.1 192289923 6409176 1600908..1601594 1 NC_011004.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: azc:AZC_1361 high similarity to two-component response regulator; LuxR family transcriptional regulator 1601594 6409176 Rpal_1519 Rhodopseudomonas palustris TIE-1 LuxR family transcriptional regulator YP_001990528.1 1600908 D 395960 CDS YP_001990529.1 192289924 6409177 1601971..1602792 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: mac:MA0993 chloride peroxidase; alpha/beta hydrolase fold protein 1602792 6409177 Rpal_1520 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001990529.1 1601971 D 395960 CDS YP_001990530.1 192289925 6409178 1602954..1603475 1 NC_011004.1 PFAM: Ferritin Dps family protein; KEGG: bja:bll0290 hypothetical low temperature-induced protein; ferritin Dps family protein 1603475 6409178 Rpal_1521 Rhodopseudomonas palustris TIE-1 ferritin Dps family protein YP_001990530.1 1602954 D 395960 CDS YP_001990531.1 192289926 6409179 1603490..1604092 1 NC_011004.1 KEGG: bja:bll0289 hypothetical protein; hypothetical protein 1604092 6409179 Rpal_1522 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990531.1 1603490 D 395960 CDS YP_001990532.1 192289927 6409180 complement(1604215..1605057) 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; KEGG: azc:AZC_1344 sensor protein; histidine kinase 1605057 6409180 Rpal_1523 Rhodopseudomonas palustris TIE-1 histidine kinase YP_001990532.1 1604215 R 395960 CDS YP_001990533.1 192289928 6409181 complement(1605203..1606108) 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_1314 transcriptional regulator; AraC family transcriptional regulator 1606108 6409181 Rpal_1524 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001990533.1 1605203 R 395960 CDS YP_001990534.1 192289929 6409182 complement(1606239..1607219) 1 NC_011004.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bja:bll0302 RNA polymerase subunit; RNA polymerase sigma-32 subunit RpoH 1607219 6409182 Rpal_1525 Rhodopseudomonas palustris TIE-1 RNA polymerase sigma-32 subunit RpoH YP_001990534.1 1606239 R 395960 CDS YP_001990535.1 192289930 6409183 complement(1607535..1609511) 1 NC_011004.1 KEGG: azc:AZC_1348 oxalate decarboxylase; TIGRFAM: bicupin, oxalate decarboxylase family; PFAM: Cupin domain protein; protein of unknown function DUF1275; cupin; oxalate decarboxylase family bicupin 1609511 6409183 Rpal_1526 Rhodopseudomonas palustris TIE-1 oxalate decarboxylase family bicupin YP_001990535.1 1607535 R 395960 CDS YP_001990536.1 192289931 6409184 complement(1609692..1610135) 1 NC_011004.1 PFAM: Camphor resistance CrcB protein; KEGG: bmt:BSUIS_B0810 hypothetical protein; camphor resistance protein CrcB 1610135 6409184 Rpal_1527 Rhodopseudomonas palustris TIE-1 camphor resistance protein CrcB YP_001990536.1 1609692 R 395960 CDS YP_001990537.1 192289932 6409185 complement(1610138..1610539) 1 NC_011004.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1610539 6409185 Rpal_1528 Rhodopseudomonas palustris TIE-1 camphor resistance protein CrcB YP_001990537.1 1610138 R 395960 CDS YP_001990538.1 192289933 6409186 complement(1610550..1613702) 1 NC_011004.1 PFAM: acriflavin resistance protein; KEGG: bja:blr0277 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 1613702 6409186 Rpal_1529 Rhodopseudomonas palustris TIE-1 acriflavin resistance protein YP_001990538.1 1610550 R 395960 CDS YP_001990539.1 192289934 6409187 complement(1613699..1614874) 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:blr0276 hypothetical protein; RND family efflux transporter MFP subunit 1614874 6409187 Rpal_1530 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001990539.1 1613699 R 395960 CDS YP_001990540.1 192289935 6409188 1615272..1617002 1 NC_011004.1 catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase 1617002 6409188 Rpal_1531 Rhodopseudomonas palustris TIE-1 pyruvate dehydrogenase YP_001990540.1 1615272 D 395960 CDS YP_001990541.1 192289936 6409189 1617248..1619644 1 NC_011004.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: atc:AGR_L_213 hypothetical protein; oxidoreductase alpha (molybdopterin) subunit 1619644 6409189 Rpal_1532 Rhodopseudomonas palustris TIE-1 oxidoreductase alpha (molybdopterin) subunit YP_001990541.1 1617248 D 395960 CDS YP_001990542.1 192289937 6409190 1619663..1621060 1 NC_011004.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: mex:Mext_1976 cytochrome bd ubiquinol oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I 1621060 6409190 Rpal_1533 Rhodopseudomonas palustris TIE-1 cytochrome bd ubiquinol oxidase subunit I YP_001990542.1 1619663 D 395960 CDS YP_001990543.1 192289938 6409191 1621057..1622082 1 NC_011004.1 PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: xau:Xaut_1267 cytochrome d ubiquinol oxidase, subunit II; cytochrome bd ubiquinol oxidase subunit II 1622082 6409191 Rpal_1534 Rhodopseudomonas palustris TIE-1 cytochrome bd ubiquinol oxidase subunit II YP_001990543.1 1621057 D 395960 CDS YP_001990544.1 192289939 6409192 1622166..1622474 1 NC_011004.1 KEGG: mlo:mlr4646 hypothetical protein; hypothetical protein 1622474 6409192 Rpal_1535 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990544.1 1622166 D 395960 CDS YP_001990545.1 192289940 6409193 1622590..1622946 1 NC_011004.1 KEGG: bja:blr0274 hypothetical protein; hypothetical protein 1622946 6409193 Rpal_1536 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990545.1 1622590 D 395960 CDS YP_001990546.1 192289941 6409194 1623132..1623980 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_2279 transcriptional regulator; AraC family transcriptional regulator 1623980 6409194 Rpal_1537 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001990546.1 1623132 D 395960 CDS YP_001990547.1 192289942 6409195 1624174..1624872 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: mlo:mlr5739 two-component sensor protein; signal transduction histidine kinase 1624872 6409195 Rpal_1538 Rhodopseudomonas palustris TIE-1 signal transduction histidine kinase YP_001990547.1 1624174 D 395960 CDS YP_001990548.1 192289943 6409196 complement(1625238..1625468) 1 NC_011004.1 KEGG: bra:BRADO7127 conserved hypothetical protein; signal peptide; hypothetical protein 1625468 6409196 Rpal_1539 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990548.1 1625238 R 395960 CDS YP_001990549.1 192289944 6409197 1625741..1627792 1 NC_011004.1 PFAM: fusaric acid resistance protein conserved region; KEGG: azc:AZC_1359 bacterial membrane protein of unknown function; fusaric acid resistance protein 1627792 6409197 Rpal_1540 Rhodopseudomonas palustris TIE-1 fusaric acid resistance protein YP_001990549.1 1625741 D 395960 CDS YP_001990550.1 192289945 6409198 1627806..1628012 1 NC_011004.1 PFAM: protein of unknown function DUF1656; KEGG: azc:AZC_1358 hypothetical protein; hypothetical protein 1628012 6409198 Rpal_1541 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990550.1 1627806 D 395960 CDS YP_001990551.1 192289946 6409199 1628009..1628950 1 NC_011004.1 PFAM: secretion protein HlyD family protein; KEGG: azc:AZC_1357 membrane fusion protein; secretion protein HlyD family protein 1628950 6409199 Rpal_1542 Rhodopseudomonas palustris TIE-1 secretion protein HlyD family protein YP_001990551.1 1628009 D 395960 CDS YP_001990552.1 192289947 6409200 complement(1628986..1629888) 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_1345 transcriptional regulator; AraC family transcriptional regulator 1629888 6409200 Rpal_1543 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001990552.1 1628986 R 395960 CDS YP_001990553.1 192289948 6409201 1630069..1635201 1 NC_011004.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: serine/threonine protein kinase; KEGG: azc:AZC_1344 sensor protein; ATP-binding protein 1635201 6409201 Rpal_1544 Rhodopseudomonas palustris TIE-1 ATP-binding protein YP_001990553.1 1630069 D 395960 CDS YP_001990554.1 192289949 6409202 1635331..1636788 1 NC_011004.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1636788 fumC 6409202 fumC Rhodopseudomonas palustris TIE-1 fumarate hydratase YP_001990554.1 1635331 D 395960 CDS YP_001990555.1 192289950 6409203 1636790..1638070 1 NC_011004.1 PFAM: protein of unknown function DUF1212; KEGG: azc:AZC_1898 hypothetical protein; hypothetical protein 1638070 6409203 Rpal_1546 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990555.1 1636790 D 395960 CDS YP_001990556.1 192289951 6409204 1638067..1638468 1 NC_011004.1 KEGG: gbe:GbCGDNIH1_1043 hypothetical protein; hypothetical protein 1638468 6409204 Rpal_1547 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990556.1 1638067 D 395960 CDS YP_001990557.1 192289952 6409205 1638465..1639958 1 NC_011004.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 1639958 6409205 Rpal_1548 Rhodopseudomonas palustris TIE-1 malate:quinone oxidoreductase YP_001990557.1 1638465 D 395960 CDS YP_001990558.1 192289953 6409206 1641010..1642047 1 NC_011004.1 PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120687 hypothetical protein; glycosyl hydrolase family protein 1642047 6409206 Rpal_1549 Rhodopseudomonas palustris TIE-1 glycosyl hydrolase family protein YP_001990558.1 1641010 D 395960 CDS YP_001990559.1 192289954 6409207 1642044..1643195 1 NC_011004.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: xau:Xaut_3575 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1643195 6409207 Rpal_1550 Rhodopseudomonas palustris TIE-1 L-carnitine dehydratase/bile acid-inducible protein F YP_001990559.1 1642044 D 395960 CDS YP_001990560.1 192289955 6409208 1643222..1644346 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rha:RHA1_ro08153 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1644346 6409208 Rpal_1551 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001990560.1 1643222 D 395960 CDS YP_001990561.1 192289956 6409209 1644355..1645530 1 NC_011004.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: msm:MSMEG_3981 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1645530 6409209 Rpal_1552 Rhodopseudomonas palustris TIE-1 L-carnitine dehydratase/bile acid-inducible protein F YP_001990561.1 1644355 D 395960 CDS YP_001990562.1 192289957 6409210 1645543..1647183 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: nca:Noca_4121 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1647183 6409210 Rpal_1553 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001990562.1 1645543 D 395960 CDS YP_001990563.1 192289958 6409211 1647176..1650643 1 NC_011004.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 1650643 6409211 Rpal_1554 Rhodopseudomonas palustris TIE-1 indolepyruvate ferredoxin oxidoreductase YP_001990563.1 1647176 D 395960 CDS YP_001990564.1 192289959 6409212 1650640..1651494 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: nca:Noca_4122 inner-membrane translocator; inner-membrane translocator 1651494 6409212 Rpal_1555 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001990564.1 1650640 D 395960 CDS YP_001990565.1 192289960 6409213 1651491..1652429 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: nca:Noca_4123 inner-membrane translocator; inner-membrane translocator 1652429 6409213 Rpal_1556 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001990565.1 1651491 D 395960 CDS YP_001990566.1 192289961 6409214 1652419..1653198 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nca:Noca_4124 ABC transporter; ABC transporter 1653198 6409214 Rpal_1557 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990566.1 1652419 D 395960 CDS YP_001990567.1 192289962 6409215 1653195..1653905 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nca:Noca_4125 ABC transporter; ABC transporter 1653905 6409215 Rpal_1558 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990567.1 1653195 D 395960 CDS YP_001990568.1 192289963 6409216 1653935..1655095 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: nca:Noca_4127 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1655095 6409216 Rpal_1559 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001990568.1 1653935 D 395960 CDS YP_001990569.1 192289964 6409217 1655152..1655817 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: cau:Caur_2221 regulatory protein TetR; TetR family transcriptional regulator 1655817 6409217 Rpal_1560 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001990569.1 1655152 D 395960 CDS YP_001990570.1 192289965 6409219 complement(1656794..1658116) 1 NC_011004.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_7140 secretion protein (HlyD family); HlyD family type I secretion membrane fusion protein 1658116 6409219 Rpal_1562 Rhodopseudomonas palustris TIE-1 HlyD family type I secretion membrane fusion protein YP_001990570.1 1656794 R 395960 CDS YP_001990571.1 192289966 6409220 complement(1658127..1659938) 1 NC_011004.1 KEGG: mlo:mll1027 rhizobiocin secretion protein RspD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter; SMART: ATPase AAA; type I secretion system ATPase 1659938 6409220 Rpal_1563 Rhodopseudomonas palustris TIE-1 type I secretion system ATPase YP_001990571.1 1658127 R 395960 CDS YP_001990572.1 192289967 6409221 1660415..1668742 1 NC_011004.1 PFAM: Hemolysin-type calcium-binding region; Endonuclease/exonuclease/phosphatase; 5'-nucleotidase; KEGG: syp:SYNPCC7002_G0067 endonuclease/exonuclease/phosphatase family; 5'-nucleotidase 1668742 6409221 Rpal_1564 Rhodopseudomonas palustris TIE-1 5'-nucleotidase YP_001990572.1 1660415 D 395960 CDS YP_001990573.1 192289968 6409222 1669157..1669957 1 NC_011004.1 PFAM: regulatory protein DeoR; hypothetical protein; KEGG: xcb:XC_0373 glycerol-3-phosphate regulon repressor; DeoR family transcriptional regulator 1669957 6409222 Rpal_1565 Rhodopseudomonas palustris TIE-1 DeoR family transcriptional regulator YP_001990573.1 1669157 D 395960 CDS YP_001990574.1 192289969 6409223 1670106..1675244 1 NC_011004.1 TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; glycerophosphoryl diester phosphodiesterase; KEGG: amr:AM1_3186 hemolysin-type calcium-binding protein; outer membrane adhesin-like protein 1675244 6409223 Rpal_1566 Rhodopseudomonas palustris TIE-1 outer membrane adhesin-like protein YP_001990574.1 1670106 D 395960 CDS YP_001990575.1 192289970 6409224 complement(1675391..1676320) 1 NC_011004.1 PFAM: Integrase catalytic region; KEGG: bja:blr2054 transposase; integrase catalytic subunit 1676320 6409224 Rpal_1567 Rhodopseudomonas palustris TIE-1 integrase catalytic subunit YP_001990575.1 1675391 R 395960 CDS YP_001990576.1 192289971 6409226 complement(1676675..1677721) 1 NC_011004.1 KEGG: swi:Swit_2460 phage integrase family protein; hypothetical protein 1677721 6409226 Rpal_1569 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990576.1 1676675 R 395960 CDS YP_001990577.1 192289972 6409227 complement(1677684..1678484) 1 NC_011004.1 hypothetical protein 1678484 6409227 Rpal_1570 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990577.1 1677684 R 395960 CDS YP_001990578.1 192289973 6409228 1679823..1680887 1 NC_011004.1 KEGG: eca:ECA1558 sulfate ester transporter periplasmic binding component; sulfate ester transporter periplasmic binding component 1680887 6409228 Rpal_1571 Rhodopseudomonas palustris TIE-1 sulfate ester transporter periplasmic binding component YP_001990578.1 1679823 D 395960 CDS YP_001990579.1 192289974 6409229 1680884..1682500 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: pfl:PFL_0207 aliphatic sulfonates ABC transporter permease protein; ABC transporter inner membrane protein 1682500 6409229 Rpal_1572 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001990579.1 1680884 D 395960 CDS YP_001990580.1 192289975 6409230 1682497..1683306 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pau:PA14_02330 BC-type transporter ATP-binding component; ABC transporter 1683306 6409230 Rpal_1573 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990580.1 1682497 D 395960 CDS YP_001990581.1 192289976 6409231 1683348..1685012 1 NC_011004.1 PFAM: sulfatase; KEGG: bja:blr0426 phosphonate monoester hydrolase; sulfatase 1685012 6409231 Rpal_1574 Rhodopseudomonas palustris TIE-1 sulfatase YP_001990581.1 1683348 D 395960 CDS YP_001990582.1 192289977 6409232 complement(1685067..1685402) 1 NC_011004.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: bbt:BBta_3673 sulfur oxidation protein (SoxZ); sulfur oxidation protein SoxZ 1685402 6409232 Rpal_1575 Rhodopseudomonas palustris TIE-1 sulfur oxidation protein SoxZ YP_001990582.1 1685067 R 395960 CDS YP_001990583.1 192289978 6409233 complement(1685399..1685869) 1 NC_011004.1 with SoxZ catalyzes the oxidation of sulfur compounds; sulfur oxidation protein SoxY 1685869 6409233 Rpal_1576 Rhodopseudomonas palustris TIE-1 sulfur oxidation protein SoxY YP_001990583.1 1685399 R 395960 CDS YP_001990584.1 192289979 6409234 complement(1685869..1687161) 1 NC_011004.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome C sulphide dehydrogenase flavin-binding; KEGG: aeh:Mlg_1267 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit; flavocytochrome c sulfide dehydrogenase 1687161 6409234 Rpal_1577 Rhodopseudomonas palustris TIE-1 flavocytochrome c sulfide dehydrogenase YP_001990584.1 1685869 R 395960 CDS YP_001990585.1 192289980 6409235 complement(1687172..1687513) 1 NC_011004.1 KEGG: pna:Pnap_1665 cytochrome C, class I; cytochrome C, class I 1687513 6409235 Rpal_1578 Rhodopseudomonas palustris TIE-1 cytochrome C, class I YP_001990585.1 1687172 R 395960 CDS YP_001990586.1 192289981 6409236 complement(1687532..1688731) 1 NC_011004.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pau:PA14_71670 hypothetical protein; hypothetical protein 1688731 6409236 Rpal_1579 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990586.1 1687532 R 395960 CDS YP_001990587.1 192289982 6409240 1690466..1691281 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO1409 ABC transporter (ATP binding subunit); ABC transporter 1691281 6409240 Rpal_1583 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990587.1 1690466 D 395960 CDS YP_001990588.1 192289983 6409241 1691278..1692144 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: ppg:PputGB1_0191 ABC transporter inner membrane protein; ABC transporter inner membrane protein 1692144 6409241 Rpal_1584 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001990588.1 1691278 D 395960 CDS YP_001990589.1 192289984 6409242 1692141..1693703 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bmu:Bmul_0738 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1693703 6409242 Rpal_1585 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001990589.1 1692141 D 395960 CDS YP_001990590.1 192289985 6409243 1693816..1694811 1 NC_011004.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: bur:Bcep18194_C6742 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 1694811 6409243 Rpal_1586 Rhodopseudomonas palustris TIE-1 2-nitropropane dioxygenase YP_001990590.1 1693816 D 395960 CDS YP_001990591.1 192289986 6409244 complement(1695225..1697048) 1 NC_011004.1 catalyzes the hydrolysis of allophanate; allophanate hydrolase 1697048 6409244 Rpal_1587 Rhodopseudomonas palustris TIE-1 allophanate hydrolase YP_001990591.1 1695225 R 395960 CDS YP_001990592.1 192289987 6409245 complement(1697048..1700596) 1 NC_011004.1 TIGRFAM: urea amidolyase related protein; urea carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rle:pRL90293 UreA amidolyase; urea carboxylase 1700596 6409245 Rpal_1588 Rhodopseudomonas palustris TIE-1 urea carboxylase YP_001990592.1 1697048 R 395960 CDS YP_001990593.1 192289988 6409246 complement(1700599..1701234) 1 NC_011004.1 TIGRFAM: urea carboxylase-associated protein 1; KEGG: rle:pRL90292 hypothetical protein; urea carboxylase-associated protein 1 1701234 6409246 Rpal_1589 Rhodopseudomonas palustris TIE-1 urea carboxylase-associated protein 1 YP_001990593.1 1700599 R 395960 CDS YP_001990594.1 192289989 6409247 complement(1701237..1702076) 1 NC_011004.1 TIGRFAM: urea carboxylase-associated protein 2; KEGG: xau:Xaut_1224 hypothetical protein; urea carboxylase-associated protein 2 1702076 6409247 Rpal_1590 Rhodopseudomonas palustris TIE-1 urea carboxylase-associated protein 2 YP_001990594.1 1701237 R 395960 CDS YP_001990595.1 192289990 6409248 complement(1702115..1702906) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: azc:AZC_4399 ABC transporter ATP-binding protein; ABC transporter 1702906 6409248 Rpal_1591 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990595.1 1702115 R 395960 CDS YP_001990596.1 192289991 6409249 complement(1702903..1703721) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: xau:Xaut_1226 ABC transporter inner membrane protein; ABC transporter inner membrane protein 1703721 6409249 Rpal_1592 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001990596.1 1702903 R 395960 CDS YP_001990597.1 192289992 6409250 complement(1703755..1704825) 1 NC_011004.1 TIGRFAM: ABC transporter periplasmic binding protein, urea carboxylase region; PFAM: NLPA lipoprotein; KEGG: xau:Xaut_1227 NlpA lipoprotein; urea ABC transporter periplasmic protein 1704825 6409250 Rpal_1593 Rhodopseudomonas palustris TIE-1 urea ABC transporter periplasmic protein YP_001990597.1 1703755 R 395960 CDS YP_001990598.1 192289993 6409251 complement(1705199..1705990) 1 NC_011004.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB4711 probable enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1705990 6409251 Rpal_1594 Rhodopseudomonas palustris TIE-1 enoyl-CoA hydratase/isomerase YP_001990598.1 1705199 R 395960 CDS YP_001990599.1 192289994 6409252 1706111..1707670 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_5827 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1707670 6409252 Rpal_1595 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001990599.1 1706111 D 395960 CDS YP_001990600.1 192289995 6409253 complement(1707827..1708765) 1 NC_011004.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: mag:amb2598 transcriptional regulator; IclR family transcriptional regulator 1708765 6409253 Rpal_1596 Rhodopseudomonas palustris TIE-1 IclR family transcriptional regulator YP_001990600.1 1707827 R 395960 CDS YP_001990601.1 192289996 6409254 1708885..1709745 1 NC_011004.1 PFAM: MaoC domain protein dehydratase; KEGG: bbr:BB4767 (R)-specific enoyl-CoA hydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase 1709745 6409254 Rpal_1597 Rhodopseudomonas palustris TIE-1 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase YP_001990601.1 1708885 D 395960 CDS YP_001990602.1 192289997 6409255 1709871..1711115 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: xau:Xaut_1620 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1711115 6409255 Rpal_1598 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001990602.1 1709871 D 395960 CDS YP_001990603.1 192289998 6409256 1711123..1711842 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: tle:Tlet_1122 ABC transporter; ABC transporter 1711842 6409256 Rpal_1599 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990603.1 1711123 D 395960 CDS YP_001990604.1 192289999 6409257 1711835..1712539 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: azc:AZC_2113 ABC transporter ATP-binding protein; ABC transporter 1712539 6409257 Rpal_1600 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990604.1 1711835 D 395960 CDS YP_001990605.1 192290000 6409258 1712553..1713416 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bxe:Bxe_C0862 ABC branched chain amino acid family transporter inner membrane subunit; branched-chain amino acid ABC transporter inner membrane protein 1713416 6409258 Rpal_1601 Rhodopseudomonas palustris TIE-1 branched-chain amino acid ABC transporter inner membrane protein YP_001990605.1 1712553 D 395960 CDS YP_001990606.1 192290001 6409259 1713413..1714423 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: xau:Xaut_1500 inner-membrane translocator; inner-membrane translocator 1714423 6409259 Rpal_1602 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001990606.1 1713413 D 395960 CDS YP_001990607.1 192290002 6409260 complement(1714450..1717608) 1 NC_011004.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: bbt:BBta_p0061 outer membrane copper (silver) and drug transport protein (RND family); CzcA family heavy metal efflux pump 1717608 6409260 Rpal_1603 Rhodopseudomonas palustris TIE-1 CzcA family heavy metal efflux pump YP_001990607.1 1714450 R 395960 CDS YP_001990608.1 192290003 6409261 complement(1717605..1718999) 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_3427 cation efflux system protein CusB precursor; RND family efflux transporter MFP subunit 1718999 6409261 Rpal_1604 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001990608.1 1717605 R 395960 CDS YP_001990609.1 192290004 6409262 complement(1719087..1719482) 1 NC_011004.1 KEGG: bbt:BBta_3428 exported protein of unknown function; hypothetical protein 1719482 6409262 Rpal_1605 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990609.1 1719087 R 395960 CDS YP_001990610.1 192290005 6409263 complement(1719579..1719989) 1 NC_011004.1 KEGG: bbt:BBta_3429 exported protein of unknown function; hypothetical protein 1719989 6409263 Rpal_1606 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990610.1 1719579 R 395960 CDS YP_001990611.1 192290006 6409264 1720533..1721477 1 NC_011004.1 KEGG: mag:amb1850 SRPI protein; SRPI protein 1721477 6409264 Rpal_1607 Rhodopseudomonas palustris TIE-1 SRPI protein YP_001990611.1 1720533 D 395960 CDS YP_001990612.1 192290007 6409265 1721464..1723437 1 NC_011004.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: mag:amb1849 probable cysteine desulfurase 1; SufS subfamily cysteine desulfurase 1723437 6409265 Rpal_1608 Rhodopseudomonas palustris TIE-1 SufS subfamily cysteine desulfurase YP_001990612.1 1721464 D 395960 CDS YP_001990613.1 192290008 6409266 1723602..1724549 1 NC_011004.1 KEGG: scl:sce4640 hypothetical protein; Serine O-acetyltransferase 1724549 6409266 Rpal_1609 Rhodopseudomonas palustris TIE-1 Serine O-acetyltransferase YP_001990613.1 1723602 D 395960 CDS YP_001990614.1 192290009 6409267 1724739..1725845 1 NC_011004.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 1725845 metN 6409267 metN Rhodopseudomonas palustris TIE-1 DL-methionine transporter ATP-binding subunit YP_001990614.1 1724739 D 395960 CDS YP_001990615.1 192290010 6409268 1725835..1726503 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: azc:AZC_3692 ABC transporter permease protein; ABC transporter inner membrane protein 1726503 6409268 Rpal_1611 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001990615.1 1725835 D 395960 CDS YP_001990616.1 192290011 6409269 1726532..1727305 1 NC_011004.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bra:BRADO4285 D-methionine ABC transporter protein, periplasmic binding protein; lipoprotein 1727305 6409269 Rpal_1612 Rhodopseudomonas palustris TIE-1 lipoprotein YP_001990616.1 1726532 D 395960 CDS YP_001990617.1 192290012 6409270 complement(1727661..1728998) 1 NC_011004.1 KEGG: azo:azo2395 phenylacetate--CoA ligase; phenylacetate--CoA ligase 1728998 6409270 Rpal_1613 Rhodopseudomonas palustris TIE-1 phenylacetate--CoA ligase YP_001990617.1 1727661 R 395960 CDS YP_001990618.1 192290013 6409271 complement(1729094..1729879) 1 NC_011004.1 PFAM: NLPA lipoprotein; KEGG: rru:Rru_A0791 NlpA lipoprotein; NLPA lipoprotein 1729879 6409271 Rpal_1614 Rhodopseudomonas palustris TIE-1 NLPA lipoprotein YP_001990618.1 1729094 R 395960 CDS YP_001990619.1 192290014 6409272 complement(1730127..1730318) 1 NC_011004.1 KEGG: bbt:BBta_2219 hypothetical protein; hypothetical protein 1730318 6409272 Rpal_1615 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990619.1 1730127 R 395960 CDS YP_001990620.1 192290015 6409273 1731010..1731843 1 NC_011004.1 PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: mca:MCA1828 dinitrogenase reductase ADP-ribosyltransferase-like protein; NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase 1731843 6409273 Rpal_1616 Rhodopseudomonas palustris TIE-1 NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase YP_001990620.1 1731010 D 395960 CDS YP_001990621.1 192290016 6409274 complement(1731952..1732482) 1 NC_011004.1 KEGG: mma:MM_2842 5-nitroimidazole antibiotic resistance protein; 5-nitroimidazole antibiotic resistance protein 1732482 6409274 Rpal_1617 Rhodopseudomonas palustris TIE-1 5-nitroimidazole antibiotic resistance protein YP_001990621.1 1731952 R 395960 CDS YP_001990622.1 192290017 6409275 complement(1732540..1733130) 1 NC_011004.1 KEGG: rru:Rru_A1390 hypothetical protein; hypothetical protein 1733130 6409275 Rpal_1618 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990622.1 1732540 R 395960 CDS YP_001990623.1 192290018 6409276 complement(1733127..1733819) 1 NC_011004.1 TIGRFAM: Fe-only nitrogenase accessory protein AnfO; PFAM: Nitrogenase iron-iron accessory protein AnfO; KEGG: rru:Rru_A1391 hypothetical protein; Fe-only nitrogenase accessory protein AnfO 1733819 6409276 Rpal_1619 Rhodopseudomonas palustris TIE-1 Fe-only nitrogenase accessory protein AnfO YP_001990623.1 1733127 R 395960 CDS YP_001990624.1 192290019 6409277 complement(1733902..1735287) 1 NC_011004.1 KEGG: rru:Rru_A1392 nitrogenase; TIGRFAM: Fe-only nitrogenase, beta subunit; PFAM: oxidoreductase/nitrogenase component 1; Fe-only nitrogenase subunit beta 1735287 6409277 Rpal_1620 Rhodopseudomonas palustris TIE-1 Fe-only nitrogenase subunit beta YP_001990624.1 1733902 R 395960 CDS YP_001990625.1 192290020 6409278 complement(1735301..1735741) 1 NC_011004.1 KEGG: rru:Rru_A1393 nitrogenase; TIGRFAM: Fe-only nitrogenase, delta subunit; PFAM: Vanadium/alternative nitrogenase delta subunit; Fe-only nitrogenase subunit delta 1735741 6409278 Rpal_1621 Rhodopseudomonas palustris TIE-1 Fe-only nitrogenase subunit delta YP_001990625.1 1735301 R 395960 CDS YP_001990626.1 192290021 6409279 complement(1735753..1737321) 1 NC_011004.1 KEGG: rru:Rru_A1394 nitrogenase iron-iron protein, alpha chain; TIGRFAM: nitrogenase alpha chain; nitrogenase component I, alpha chain; nitrogenase iron-iron protein, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase alpha chain 1737321 6409279 Rpal_1622 Rhodopseudomonas palustris TIE-1 nitrogenase alpha chain YP_001990626.1 1735753 R 395960 CDS YP_001990627.1 192290022 6409280 complement(1737371..1738198) 1 NC_011004.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; alternative NifH, may be molybdenum-independent; nitrogenase reductase 1738198 nifH 6409280 nifH Rhodopseudomonas palustris TIE-1 nitrogenase reductase YP_001990627.1 1737371 R 395960 CDS YP_001990628.1 192290023 6409281 complement(1738722..1740407) 1 NC_011004.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase AAA; SMART: ATPase AAA; KEGG: rru:Rru_A1388 transcriptional regulator, NifA subfamily, fis family; Fis family transcriptional regulator 1740407 6409281 Rpal_1624 Rhodopseudomonas palustris TIE-1 Fis family transcriptional regulator YP_001990628.1 1738722 R 395960 CDS YP_001990629.1 192290024 6409282 complement(1740411..1740935) 1 NC_011004.1 KEGG: bja:blr8159 hypothetical protein; hypothetical protein 1740935 6409282 Rpal_1625 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990629.1 1740411 R 395960 CDS YP_001990630.1 192290025 6409283 complement(1741118..1741939) 1 NC_011004.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: nha:Nham_2954 aspartate/glutamate/uridylate kinase; aspartate/glutamate/uridylate kinase 1741939 6409283 Rpal_1626 Rhodopseudomonas palustris TIE-1 aspartate/glutamate/uridylate kinase YP_001990630.1 1741118 R 395960 CDS YP_001990631.1 192290026 6409284 complement(1741949..1742761) 1 NC_011004.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: azc:AZC_3023 aspartate/glutamate/uridylate kinase; aspartate/glutamate/uridylate kinase 1742761 6409284 Rpal_1627 Rhodopseudomonas palustris TIE-1 aspartate/glutamate/uridylate kinase YP_001990631.1 1741949 R 395960 CDS YP_001990632.1 192290027 6409285 complement(1743053..1743868) 1 NC_011004.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: fal:FRAAL6172 GntR-family transcription regulator; GntR family transcriptional regulator 1743868 6409285 Rpal_1628 Rhodopseudomonas palustris TIE-1 GntR family transcriptional regulator YP_001990632.1 1743053 R 395960 CDS YP_001990633.1 192290028 6409286 1744056..1744196 1 NC_011004.1 hypothetical protein 1744196 6409286 Rpal_1629 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990633.1 1744056 D 395960 CDS YP_001990634.1 192290029 6409287 1744243..1745244 1 NC_011004.1 KEGG: vei:Veis_3425 oligopeptide/dipeptide ABC transporter ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 1745244 6409287 Rpal_1630 Rhodopseudomonas palustris TIE-1 oligopeptide/dipeptide ABC transporter ATPase YP_001990634.1 1744243 D 395960 CDS YP_001990635.1 192290030 6409288 1745241..1746290 1 NC_011004.1 KEGG: vei:Veis_3426 oligopeptide/dipeptide ABC transporter ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 1746290 6409288 Rpal_1631 Rhodopseudomonas palustris TIE-1 oligopeptide/dipeptide ABC transporter ATPase YP_001990635.1 1745241 D 395960 CDS YP_001990636.1 192290031 6409289 1746281..1747834 1 NC_011004.1 PFAM: extracellular solute-binding protein family 5; KEGG: vei:Veis_3427 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 1747834 6409289 Rpal_1632 Rhodopseudomonas palustris TIE-1 family 5 extracellular solute-binding protein YP_001990636.1 1746281 D 395960 CDS YP_001990637.1 192290032 6409290 1747887..1748843 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: vei:Veis_3428 ABC transporter inner membrane protein; ABC transporter inner membrane protein 1748843 6409290 Rpal_1633 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001990637.1 1747887 D 395960 CDS YP_001990638.1 192290033 6409291 1748840..1749724 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: vei:Veis_3435 ABC transporter inner membrane protein; ABC transporter inner membrane protein 1749724 6409291 Rpal_1634 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001990638.1 1748840 D 395960 CDS YP_001990639.1 192290034 6409292 1749750..1751465 1 NC_011004.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 1751465 6409292 Rpal_1635 Rhodopseudomonas palustris TIE-1 acyl-CoA synthetase YP_001990639.1 1749750 D 395960 CDS YP_001990640.1 192290035 6409293 1751529..1754840 1 NC_011004.1 PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: bja:bll7292 probable pyruvate carboxylase; carbamoyl-phosphate synthase L chain ATP-binding 1754840 6409293 Rpal_1636 Rhodopseudomonas palustris TIE-1 carbamoyl-phosphate synthase L chain ATP-binding YP_001990640.1 1751529 D 395960 CDS YP_001990641.1 192290036 6409294 1754878..1755831 1 NC_011004.1 KEGG: bja:blr2724 hypothetical protein; hypothetical protein 1755831 6409294 Rpal_1637 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990641.1 1754878 D 395960 CDS YP_001990642.1 192290037 6409295 complement(1755838..1755993) 1 NC_011004.1 KEGG: bra:BRADO1773 conserved hypothetical protein; signal peptide; hypothetical protein 1755993 6409295 Rpal_1638 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990642.1 1755838 R 395960 CDS YP_001990643.1 192290038 6409296 1756131..1756739 1 NC_011004.1 PFAM: cytochrome C oxidase subunit III; KEGG: bbt:BBta_2086 NorE protein involved in nitric oxide reduction; cytochrome C oxidase subunit III 1756739 6409296 Rpal_1639 Rhodopseudomonas palustris TIE-1 cytochrome C oxidase subunit III YP_001990643.1 1756131 D 395960 CDS YP_001990644.1 192290039 6409297 1756744..1757013 1 NC_011004.1 KEGG: dsh:Dshi_3188 nitric oxide reductase F protein; hypothetical protein 1757013 6409297 Rpal_1640 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990644.1 1756744 D 395960 CDS YP_001990645.1 192290040 6409298 1757124..1757576 1 NC_011004.1 KEGG: bov:BOV_A0224 nitric-oxide reductase, small subunit; nitric-oxide reductase, small subunit 1757576 6409298 Rpal_1641 Rhodopseudomonas palustris TIE-1 nitric-oxide reductase, small subunit YP_001990645.1 1757124 D 395960 CDS YP_001990646.1 192290041 6409299 1757614..1758960 1 NC_011004.1 PFAM: cytochrome C oxidase subunit I; KEGG: bja:blr3215 nitric oxide reductase subunit B; nitric-oxide reductase 1758960 6409299 Rpal_1642 Rhodopseudomonas palustris TIE-1 nitric-oxide reductase YP_001990646.1 1757614 D 395960 CDS YP_001990647.1 192290042 6409300 1759017..1759829 1 NC_011004.1 PFAM: ATPase AAA; CbbQ/NirQ/NorQ domain protein; KEGG: bja:blr3216 NorQ protein; ATPase AAA 1759829 6409300 Rpal_1643 Rhodopseudomonas palustris TIE-1 ATPase AAA YP_001990647.1 1759017 D 395960 CDS YP_001990648.1 192290043 6409301 1759970..1761880 1 NC_011004.1 PFAM: von Willebrand factor type A; KEGG: bja:blr3217 NorD protein; von Willebrand factor type A 1761880 6409301 Rpal_1644 Rhodopseudomonas palustris TIE-1 von Willebrand factor type A YP_001990648.1 1759970 D 395960 CDS YP_001990649.1 192290044 6409302 complement(1761892..1762764) 1 NC_011004.1 KEGG: sfr:Sfri_0063 hypothetical protein; hypothetical protein 1762764 6409302 Rpal_1645 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990649.1 1761892 R 395960 CDS YP_001990650.1 192290045 6409303 complement(1762884..1763900) 1 NC_011004.1 KEGG: azc:AZC_2320 hypothetical protein; hypothetical protein 1763900 6409303 Rpal_1646 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990650.1 1762884 R 395960 CDS YP_001990651.1 192290046 6409304 complement(1763992..1765200) 1 NC_011004.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: oan:Oant_4174 cobalamin synthesis protein P47K; cobalamin synthesis protein P47K 1765200 6409304 Rpal_1647 Rhodopseudomonas palustris TIE-1 cobalamin synthesis protein P47K YP_001990651.1 1763992 R 395960 CDS YP_001990652.1 192290047 6409305 1765529..1767385 1 NC_011004.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1767385 6409305 Rpal_1648 Rhodopseudomonas palustris TIE-1 dihydroxy-acid dehydratase YP_001990652.1 1765529 D 395960 CDS YP_001990653.1 192290048 6409306 complement(1767511..1768314) 1 NC_011004.1 PFAM: peptidase C26; KEGG: bra:BRADO4209 gamma-glutamyl hydrolase family protein; peptidase C26 1768314 6409306 Rpal_1649 Rhodopseudomonas palustris TIE-1 peptidase C26 YP_001990653.1 1767511 R 395960 CDS YP_001990654.1 192290049 6409307 1768560..1770374 1 NC_011004.1 PFAM: CBS domain containing protein; Chloride channel core; KEGG: ret:RHE_CH02492 chloride channel protein; chloride channel protein 1770374 6409307 Rpal_1650 Rhodopseudomonas palustris TIE-1 chloride channel protein YP_001990654.1 1768560 D 395960 CDS YP_001990655.1 192290050 6409308 complement(1770388..1772193) 1 NC_011004.1 catalyzes the hydrolysis of allophanate; allophanate hydrolase 1772193 6409308 Rpal_1651 Rhodopseudomonas palustris TIE-1 allophanate hydrolase YP_001990655.1 1770388 R 395960 CDS YP_001990656.1 192290051 6409309 complement(1772190..1772936) 1 NC_011004.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bbt:BBta_0723 transcriptional regulatory protein, GntR family; GntR family transcriptional regulator 1772936 6409309 Rpal_1652 Rhodopseudomonas palustris TIE-1 GntR family transcriptional regulator YP_001990656.1 1772190 R 395960 CDS YP_001990657.1 192290052 6409310 complement(1772933..1773328) 1 NC_011004.1 KEGG: bra:BRADO6817 hypothetical protein; hypothetical protein 1773328 6409310 Rpal_1653 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990657.1 1772933 R 395960 CDS YP_001990658.1 192290053 6409311 complement(1773331..1774707) 1 NC_011004.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 1774707 6409311 Rpal_1654 Rhodopseudomonas palustris TIE-1 amidase YP_001990658.1 1773331 R 395960 CDS YP_001990659.1 192290054 6409312 complement(1774736..1774927) 1 NC_011004.1 KEGG: bbt:BBta_0720 hypothetical protein; hypothetical protein 1774927 6409312 Rpal_1655 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990659.1 1774736 R 395960 CDS YP_001990660.1 192290055 6409313 complement(1775020..1776861) 1 NC_011004.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_0719 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; ABC transporter 1776861 6409313 Rpal_1656 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990660.1 1775020 R 395960 CDS YP_001990661.1 192290056 6409315 complement(1777017..1777928) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:blr1038 ABC transporter permease protein; ABC transporter inner membrane protein 1777928 6409315 Rpal_1658 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001990661.1 1777017 R 395960 CDS YP_001990662.1 192290057 6409316 complement(1777939..1778952) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:blr1037 ABC transporter permease protein; ABC transporter inner membrane protein 1778952 6409316 Rpal_1659 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001990662.1 1777939 R 395960 CDS YP_001990663.1 192290058 6409317 complement(1779123..1780742) 1 NC_011004.1 PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_0716 dipeptide/oligopeptide/nickel ABC transporter substrate-binding protein; family 5 extracellular solute-binding protein 1780742 6409317 Rpal_1660 Rhodopseudomonas palustris TIE-1 family 5 extracellular solute-binding protein YP_001990663.1 1779123 R 395960 CDS YP_001990664.1 192290059 6409318 complement(1781121..1781585) 1 NC_011004.1 hypothetical protein 1781585 6409318 Rpal_1661 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990664.1 1781121 R 395960 CDS YP_001990665.1 192290060 6409319 complement(1781839..1782078) 1 NC_011004.1 hypothetical protein 1782078 6409319 Rpal_1662 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990665.1 1781839 R 395960 CDS YP_001990666.1 192290061 6409320 1782403..1783410 1 NC_011004.1 PFAM: extracellular solute-binding protein family 1; KEGG: bra:BRADO5362 conserved hypothetical protein; ABC-type Fe3+ transport system; exported protein; iron ABC transporter substrate-binding protein 1783410 6409320 Rpal_1663 Rhodopseudomonas palustris TIE-1 iron ABC transporter substrate-binding protein YP_001990666.1 1782403 D 395960 CDS YP_001990667.1 192290062 6409321 1783458..1784273 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_5853 permease protein; ABC transporter inner membrane protein 1784273 6409321 Rpal_1664 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001990667.1 1783458 D 395960 CDS YP_001990668.1 192290063 6409322 1784278..1785063 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO5360 molybdenum transport system permease protein ModB; exported protein; ABC transporter inner membrane protein 1785063 6409322 Rpal_1665 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001990668.1 1784278 D 395960 CDS YP_001990669.1 192290064 6409323 1785060..1786121 1 NC_011004.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: bbt:BBta_5851 ATP binding protein (ABC superfamily, atp_bind); ABC transporter 1786121 6409323 Rpal_1666 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990669.1 1785060 D 395960 CDS YP_001990670.1 192290065 6409324 1786121..1786975 1 NC_011004.1 PFAM: metallophosphoesterase; KEGG: bra:BRADO5358 hypothetical protein; metallophosphoesterase 1786975 6409324 Rpal_1667 Rhodopseudomonas palustris TIE-1 metallophosphoesterase YP_001990670.1 1786121 D 395960 CDS YP_001990671.1 192290066 6409325 1787079..1787474 1 NC_011004.1 PFAM: response regulator receiver; KEGG: mlo:mll2300 probable response regulator; response regulator receiver protein 1787474 6409325 Rpal_1668 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001990671.1 1787079 D 395960 CDS YP_001990672.1 192290067 6409326 1787605..1788450 1 NC_011004.1 KEGG: bja:blr6127 hypothetical protein; hypothetical protein 1788450 6409326 Rpal_1669 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990672.1 1787605 D 395960 CDS YP_001990673.1 192290068 6409327 complement(1788461..1789696) 1 NC_011004.1 PFAM: FAD dependent oxidoreductase; KEGG: rle:RL1363 oxidoreductase; FAD dependent oxidoreductase 1789696 6409327 Rpal_1670 Rhodopseudomonas palustris TIE-1 FAD dependent oxidoreductase YP_001990673.1 1788461 R 395960 CDS YP_001990674.1 192290069 6409328 1790046..1791698 1 NC_011004.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 1791698 6409328 Rpal_1671 Rhodopseudomonas palustris TIE-1 phosphoglucomutase YP_001990674.1 1790046 D 395960 CDS YP_001990675.1 192290070 6409329 1791876..1792568 1 NC_011004.1 PFAM: NnrUfamily protein; KEGG: sil:SPO1134 NnrU family protein; NnrU family protein 1792568 6409329 Rpal_1672 Rhodopseudomonas palustris TIE-1 NnrU family protein YP_001990675.1 1791876 D 395960 CDS YP_001990676.1 192290071 6409330 1792785..1794011 1 NC_011004.1 PFAM: NnrS family protein; KEGG: bbt:BBta_6821 membrane protein, NnrS-like protein; NnrS family protein 1794011 6409330 Rpal_1673 Rhodopseudomonas palustris TIE-1 NnrS family protein YP_001990676.1 1792785 D 395960 CDS YP_001990677.1 192290072 6409331 1794050..1794298 1 NC_011004.1 KEGG: ace:Acel_0511 hypothetical protein; hypothetical protein 1794298 6409331 Rpal_1674 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990677.1 1794050 D 395960 CDS YP_001990678.1 192290073 6409332 complement(1794302..1795504) 1 NC_011004.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr2779 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 1795504 6409332 Rpal_1675 Rhodopseudomonas palustris TIE-1 L-carnitine dehydratase/bile acid-inducible protein F YP_001990678.1 1794302 R 395960 CDS YP_001990679.1 192290074 6409333 complement(1795639..1796325) 1 NC_011004.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bbt:BBta_3079 two-component transcriptional regulator, LuxR family; LuxR family transcriptional regulator 1796325 6409333 Rpal_1676 Rhodopseudomonas palustris TIE-1 LuxR family transcriptional regulator YP_001990679.1 1795639 R 395960 CDS YP_001990680.1 192290075 6409334 complement(1796330..1798642) 1 NC_011004.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: bbt:BBta_3080 bacteriophytochrome; GAF sensor signal transduction histidine kinase 1798642 6409334 Rpal_1677 Rhodopseudomonas palustris TIE-1 GAF sensor signal transduction histidine kinase YP_001990680.1 1796330 R 395960 CDS YP_001990681.1 192290076 6409335 1798988..1799143 1 NC_011004.1 PFAM: antenna complex alpha/beta subunit; KEGG: bbt:BBta_3081 light harvesting protein B-800-850; antenna complex alpha/beta subunit 1799143 6409335 Rpal_1678 Rhodopseudomonas palustris TIE-1 antenna complex alpha/beta subunit YP_001990681.1 1798988 D 395960 CDS YP_001990682.1 192290077 6409336 1799156..1799335 1 NC_011004.1 PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1408 antenna complex, alpha/beta subunit; antenna complex alpha/beta subunit 1799335 6409336 Rpal_1679 Rhodopseudomonas palustris TIE-1 antenna complex alpha/beta subunit YP_001990682.1 1799156 D 395960 CDS YP_001990683.1 192290078 6409337 1799522..1800958 1 NC_011004.1 PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: bbt:BBta_3083 PucC, chlorophyll major facilitator superfamily (MFS) exporter; PUCC protein 1800958 6409337 Rpal_1680 Rhodopseudomonas palustris TIE-1 PUCC protein YP_001990683.1 1799522 D 395960 CDS YP_001990684.1 192290079 6409338 1800977..1801627 1 NC_011004.1 KEGG: bbt:BBta_3084 hypothetical protein; hypothetical protein 1801627 6409338 Rpal_1681 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990684.1 1800977 D 395960 CDS YP_001990685.1 192290080 6409339 1801643..1801936 1 NC_011004.1 KEGG: nve:NEMVE_v1g94016 predicted protein Pfam: Extensin_2 PROSITE: LEU_RICH PRO_RICH; hypothetical protein 1801936 6409339 Rpal_1682 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990685.1 1801643 D 395960 CDS YP_001990686.1 192290081 6409340 1802077..1803618 1 NC_011004.1 PFAM: FAD dependent oxidoreductase; KEGG: bbt:BBta_0651 flavin-containing monooxygenase; FAD dependent oxidoreductase 1803618 6409340 Rpal_1683 Rhodopseudomonas palustris TIE-1 FAD dependent oxidoreductase YP_001990686.1 1802077 D 395960 CDS YP_001990687.1 192290082 6409341 1803968..1805167 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:blr1515 RND multidrug efflux membrane permease; RND family efflux transporter MFP subunit 1805167 6409341 Rpal_1684 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001990687.1 1803968 D 395960 CDS YP_001990688.1 192290083 6409342 1805178..1808345 1 NC_011004.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bja:blr1516 RND multidrug efflux transporter; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 1808345 6409342 Rpal_1685 Rhodopseudomonas palustris TIE-1 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_001990688.1 1805178 D 395960 CDS YP_001990689.1 192290084 6409343 1808483..1808935 1 NC_011004.1 KEGG: bra:BRADO6559 hypothetical protein; hypothetical protein 1808935 6409343 Rpal_1686 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990689.1 1808483 D 395960 CDS YP_001990690.1 192290085 6409344 complement(1809192..1809641) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bra:BRADO4339 conserved hypothetical protein; ribonucleotide reductase; hypothetical protein 1809641 6409344 Rpal_1687 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990690.1 1809192 R 395960 CDS YP_001990691.1 192290086 6409345 complement(1809756..1810985) 1 NC_011004.1 PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: rru:Rru_A0937 coenzyme F420 hydrogenase/dehydrogenase beta subunit-like; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain-containing protein 1810985 6409345 Rpal_1688 Rhodopseudomonas palustris TIE-1 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain-containing protein YP_001990691.1 1809756 R 395960 CDS YP_001990692.1 192290087 6409346 complement(1811046..1811534) 1 NC_011004.1 PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: rde:RD1_4107 hypothetical protein; NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 1811534 6409346 Rpal_1689 Rhodopseudomonas palustris TIE-1 NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 YP_001990692.1 1811046 R 395960 CDS YP_001990693.1 192290088 6409347 complement(1811534..1813138) 1 NC_011004.1 KEGG: hha:Hhal_1627 dienelactone hydrolase; dienelactone hydrolase 1813138 6409347 Rpal_1690 Rhodopseudomonas palustris TIE-1 dienelactone hydrolase YP_001990693.1 1811534 R 395960 CDS YP_001990694.1 192290089 6409348 complement(1813138..1814451) 1 NC_011004.1 KEGG: nha:Nham_1076 hypothetical protein; hypothetical protein 1814451 6409348 Rpal_1691 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990694.1 1813138 R 395960 CDS YP_001990695.1 192290090 6409349 1814702..1815682 1 NC_011004.1 KEGG: bra:BRADO1874 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 1815682 6409349 Rpal_1692 Rhodopseudomonas palustris TIE-1 porphobilinogen deaminase YP_001990695.1 1814702 D 395960 CDS YP_001990696.1 192290091 6409350 1815688..1816710 1 NC_011004.1 KEGG: bbt:BBta_6449 magnesium-chelatase 38 kDa subunit; TIGRFAM: magnesium chelatase ATPase subunit I; PFAM: magnesium chelatase ChlI subunit; SMART: ATPase AAA; magnesium chelatase ATPase subunit I 1816710 6409350 Rpal_1693 Rhodopseudomonas palustris TIE-1 magnesium chelatase ATPase subunit I YP_001990696.1 1815688 D 395960 CDS YP_001990697.1 192290092 6409351 1816707..1818479 1 NC_011004.1 involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; part of a complex with BchI, BchD, and BchH; magnesium chelatase subunit D 1818479 bchD 6409351 bchD Rhodopseudomonas palustris TIE-1 magnesium chelatase subunit D YP_001990697.1 1816707 D 395960 CDS YP_001990698.1 192290093 6409352 complement(1818522..1819253) 1 NC_011004.1 PFAM: type IV pilus assembly PilZ; KEGG: bra:BRADO5217 hypothetical protein; type IV pilus assembly PilZ 1819253 6409352 Rpal_1695 Rhodopseudomonas palustris TIE-1 type IV pilus assembly PilZ YP_001990698.1 1818522 R 395960 CDS YP_001990699.1 192290094 6409353 complement(1819636..1820652) 1 NC_011004.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1820652 hemE 6409353 hemE Rhodopseudomonas palustris TIE-1 uroporphyrinogen decarboxylase YP_001990699.1 1819636 R 395960 CDS YP_001990700.1 192290095 6409354 1820793..1821746 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: bbt:BBta_6447 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1821746 6409354 Rpal_1697 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001990700.1 1820793 D 395960 CDS YP_001990701.1 192290096 6409355 1821757..1822644 1 NC_011004.1 KEGG: bbt:BBta_6446 alpha/beta hydrolase, protoporphyrin IX magnesium chelatase BchO-like protein; TIGRFAM: magnesium chelatase accessory protein; PFAM: alpha/beta hydrolase fold; magnesium chelatase accessory protein 1822644 6409355 Rpal_1698 Rhodopseudomonas palustris TIE-1 magnesium chelatase accessory protein YP_001990701.1 1821757 D 395960 CDS YP_001990702.1 192290097 6409356 1822720..1824255 1 NC_011004.1 TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bra:BRADO1610 phytoene dehydrogenase (phytoene desaturase); phytoene desaturase 1824255 6409356 Rpal_1699 Rhodopseudomonas palustris TIE-1 phytoene desaturase YP_001990702.1 1822720 D 395960 CDS YP_001990703.1 192290098 6409357 1824252..1825319 1 NC_011004.1 PFAM: Squalene/phytoene synthase; KEGG: rru:Rru_A0494 squalene/phytoene synthase; squalene/phytoene synthase 1825319 6409357 Rpal_1700 Rhodopseudomonas palustris TIE-1 squalene/phytoene synthase YP_001990703.1 1824252 D 395960 CDS YP_001990704.1 192290099 6409358 1825622..1826533 1 NC_011004.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1826533 6409358 Rpal_1701 Rhodopseudomonas palustris TIE-1 coproporphyrinogen III oxidase YP_001990704.1 1825622 D 395960 CDS YP_001990705.1 192290100 6409359 complement(1826582..1827418) 1 NC_011004.1 PFAM: UspA domain protein; KEGG: mrd:Mrad2831_0427 UspA domain protein; UspA domain-containing protein 1827418 6409359 Rpal_1702 Rhodopseudomonas palustris TIE-1 UspA domain-containing protein YP_001990705.1 1826582 R 395960 CDS YP_001990706.1 192290101 6409360 1827719..1827853 1 NC_011004.1 KEGG: bra:BRADO1612 hypothetical protein; hypothetical protein 1827853 6409360 Rpal_1703 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990706.1 1827719 D 395960 CDS YP_001990707.1 192290102 6409361 1827889..1828002 1 NC_011004.1 KEGG: bbt:BBta_6443 hypothetical protein; hypothetical protein 1828002 6409361 Rpal_1704 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990707.1 1827889 D 395960 CDS YP_001990708.1 192290103 6409362 complement(1828029..1828982) 1 NC_011004.1 PFAM: hydroxyneurosporene synthase; KEGG: bbt:BBta_6442 neurosporene and anhydrorhodovibrin hydratase; hydroxyneurosporene synthase 1828982 6409362 Rpal_1705 Rhodopseudomonas palustris TIE-1 hydroxyneurosporene synthase YP_001990708.1 1828029 R 395960 CDS YP_001990709.1 192290104 6409363 complement(1828987..1830546) 1 NC_011004.1 TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bra:BRADO1614 hydroxyneurosporene and rhodopin dehydrogenase; phytoene desaturase 1830546 6409363 Rpal_1706 Rhodopseudomonas palustris TIE-1 phytoene desaturase YP_001990709.1 1828987 R 395960 CDS YP_001990710.1 192290105 6409364 1830668..1831534 1 NC_011004.1 PFAM: polyprenyl synthetase; KEGG: bra:BRADO1615 geranylgeranyl pyrophosphate synthetase (GgpP synthetase) (farnesyltranstransferase); polyprenyl synthetase 1831534 6409364 Rpal_1707 Rhodopseudomonas palustris TIE-1 polyprenyl synthetase YP_001990710.1 1830668 D 395960 CDS YP_001990711.1 192290106 6409365 1831584..1832705 1 NC_011004.1 PFAM: O-methyltransferase family 2; methyltransferase type 12; KEGG: rru:Rru_A2982 O-methyltransferase, family 2; O-methyltransferase family 2 1832705 6409365 Rpal_1708 Rhodopseudomonas palustris TIE-1 O-methyltransferase family 2 YP_001990711.1 1831584 D 395960 CDS YP_001990712.1 192290107 6409366 1832794..1833732 1 NC_011004.1 TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rru:Rru_A2981 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide; chlorophyll synthesis pathway protein BchC 1833732 6409366 Rpal_1709 Rhodopseudomonas palustris TIE-1 chlorophyll synthesis pathway protein BchC YP_001990712.1 1832794 D 395960 CDS YP_001990713.1 192290108 6409367 1833732..1834730 1 NC_011004.1 KEGG: mrd:Mrad2831_2818 chlorophyllide reductase iron protein subunit X; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein; chlorophyllide reductase iron protein subunit X 1834730 6409367 Rpal_1710 Rhodopseudomonas palustris TIE-1 chlorophyllide reductase iron protein subunit X YP_001990713.1 1833732 D 395960 CDS YP_001990714.1 192290109 6409368 1834754..1836340 1 NC_011004.1 TIGRFAM: chlorophyllide reductase subunit Y; KEGG: bbt:BBta_6436 bacteriochlorophyllide reductase subunit 52.5 kDa chain; chlorophyllide reductase subunit Y 1836340 6409368 Rpal_1711 Rhodopseudomonas palustris TIE-1 chlorophyllide reductase subunit Y YP_001990714.1 1834754 D 395960 CDS YP_001990715.1 192290110 6409369 1836340..1837788 1 NC_011004.1 TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1; protein of unknown function DUF1197; KEGG: bra:BRADO1620 bacteriochlorophyllide reductase Z subunit; chlorophyllide reductase subunit Z 1837788 6409369 Rpal_1712 Rhodopseudomonas palustris TIE-1 chlorophyllide reductase subunit Z YP_001990715.1 1836340 D 395960 CDS YP_001990716.1 192290111 6409370 1837866..1838090 1 NC_011004.1 hypothetical protein 1838090 6409370 Rpal_1713 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990716.1 1837866 D 395960 CDS YP_001990717.1 192290112 6409371 1838244..1838441 1 NC_011004.1 PFAM: antenna complex alpha/beta subunit; KEGG: bbt:BBta_6433 light harvesting 1 beta subunit; antenna complex alpha/beta subunit 1838441 6409371 Rpal_1714 Rhodopseudomonas palustris TIE-1 antenna complex alpha/beta subunit YP_001990717.1 1838244 D 395960 CDS YP_001990718.1 192290113 6409372 1838457..1838648 1 NC_011004.1 PFAM: antenna complex alpha/beta subunit; KEGG: bra:BRADO1623 light harvesting 1 alpha subunit; antenna complex alpha/beta subunit 1838648 6409372 Rpal_1715 Rhodopseudomonas palustris TIE-1 antenna complex alpha/beta subunit YP_001990718.1 1838457 D 395960 CDS YP_001990719.1 192290114 6409373 1838780..1839613 1 NC_011004.1 TIGRFAM: photosynthetic reaction center L subunit; PFAM: photosynthetic reaction centre protein; KEGG: bbt:BBta_6431 photosynthetic reaction center L subunit; photosynthetic reaction center subunit L 1839613 6409373 Rpal_1716 Rhodopseudomonas palustris TIE-1 photosynthetic reaction center subunit L YP_001990719.1 1838780 D 395960 CDS YP_001990720.1 192290115 6409374 1839641..1840564 1 NC_011004.1 TIGRFAM: photosynthetic reaction center, M subunit; PFAM: photosynthetic reaction centre protein; KEGG: bra:BRADO1625 photosynthetic reaction center M protein; photosynthetic reaction center subunit M 1840564 6409374 Rpal_1717 Rhodopseudomonas palustris TIE-1 photosynthetic reaction center subunit M YP_001990720.1 1839641 D 395960 CDS YP_001990721.1 192290116 6409375 1840849..1842282 1 NC_011004.1 KEGG: bbt:BBta_6421 transcriptional regulatory protein, HTH fis-type family; TIGRFAM: transcriptional regulator PpsR; PFAM: helix-turn-helix Fis-type; PAS fold domain protein; SMART: PAS domain containing protein; Fis family transcriptional regulator 1842282 6409375 Rpal_1718 Rhodopseudomonas palustris TIE-1 Fis family transcriptional regulator YP_001990721.1 1840849 D 395960 CDS YP_001990722.1 192290117 6409376 1842275..1843168 1 NC_011004.1 TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: mex:Mext_4820 bacteriochlorophyll/chlorophyll synthetase; bacteriochlorophyll/chlorophyll a synthase 1843168 6409376 Rpal_1719 Rhodopseudomonas palustris TIE-1 bacteriochlorophyll/chlorophyll a synthase YP_001990722.1 1842275 D 395960 CDS YP_001990723.1 192290118 6409377 1843171..1844487 1 NC_011004.1 PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: bbt:BBta_6423 light harvesting pigment major facilitator family (MFS) transporter Bch2-like protein; PUCC protein 1844487 6409377 Rpal_1720 Rhodopseudomonas palustris TIE-1 PUCC protein YP_001990723.1 1843171 D 395960 CDS YP_001990724.1 192290119 6409378 1844489..1845694 1 NC_011004.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bra:BRADO1632 geranylgeranyl reductase; geranylgeranyl reductase 1845694 6409378 Rpal_1721 Rhodopseudomonas palustris TIE-1 geranylgeranyl reductase YP_001990724.1 1844489 D 395960 CDS YP_001990725.1 192290120 6409379 1845714..1846178 1 NC_011004.1 PFAM: TspO/MBR family protein; KEGG: mpt:Mpe_A2778 tryptophan-rich sensory protein; TspO and MBR-like protein 1846178 6409379 Rpal_1722 Rhodopseudomonas palustris TIE-1 TspO and MBR-like protein YP_001990725.1 1845714 D 395960 CDS YP_001990726.1 192290121 6409380 1846215..1846487 1 NC_011004.1 KEGG: bbt:BBta_6425 hypothetical protein; hypothetical protein 1846487 6409380 Rpal_1723 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990726.1 1846215 D 395960 CDS YP_001990727.1 192290122 6409381 complement(1846612..1847031) 1 NC_011004.1 PFAM: cytochrome C class I; KEGG: bra:BRADO1630 cytochrome C2; cytochrome C class I 1847031 6409381 Rpal_1724 Rhodopseudomonas palustris TIE-1 cytochrome C class I YP_001990727.1 1846612 R 395960 CDS YP_001990728.1 192290123 6409382 1847353..1848747 1 NC_011004.1 KEGG: bra:BRADO1629 transcriptional regulator PpsR2; fis family; TIGRFAM: transcriptional regulator PpsR; PFAM: helix-turn-helix Fis-type; PAS fold domain protein; SMART: PAS domain containing protein; Fis family transcriptional regulator 1848747 6409382 Rpal_1725 Rhodopseudomonas palustris TIE-1 Fis family transcriptional regulator YP_001990728.1 1847353 D 395960 CDS YP_001990729.1 192290124 6409383 1848748..1850943 1 NC_011004.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: bbt:BBta_6428 bacteriophytochrome; PAS/PAC sensor protein 1850943 6409383 Rpal_1726 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor protein YP_001990729.1 1848748 D 395960 CDS YP_001990730.1 192290125 6409384 complement(1851075..1851737) 1 NC_011004.1 PFAM: Haem oxygenase-like; KEGG: bra:BRADO1626 heme oxygenase; heme oxygenase 1851737 6409384 Rpal_1727 Rhodopseudomonas palustris TIE-1 heme oxygenase YP_001990730.1 1851075 R 395960 CDS YP_001990731.1 192290126 6409385 complement(1851798..1852679) 1 NC_011004.1 PFAM: cobalamin B12-binding domain protein; KEGG: bbt:BBta_6420 regulator with a cobalamin (vitamin B12)-binding domain, AerR-like protein; cobalamin B12-binding domain-containing protein 1852679 6409385 Rpal_1728 Rhodopseudomonas palustris TIE-1 cobalamin B12-binding domain-containing protein YP_001990731.1 1851798 R 395960 CDS YP_001990732.1 192290127 6409386 1852957..1853496 1 NC_011004.1 PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: bra:BRADO1638 2-vinyl bacteriochlorophyllide hydratase; 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD 1853496 6409386 Rpal_1729 Rhodopseudomonas palustris TIE-1 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD YP_001990732.1 1852957 D 395960 CDS YP_001990733.1 192290128 6409387 1853493..1854782 1 NC_011004.1 light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit N 1854782 6409387 Rpal_1730 Rhodopseudomonas palustris TIE-1 light-independent protochlorophyllide reductase subunit N YP_001990733.1 1853493 D 395960 CDS YP_001990734.1 192290129 6409388 1854785..1856407 1 NC_011004.1 light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit B 1856407 6409388 Rpal_1731 Rhodopseudomonas palustris TIE-1 light-independent protochlorophyllide reductase subunit B YP_001990734.1 1854785 D 395960 CDS YP_001990735.1 192290130 6409389 1856382..1860128 1 NC_011004.1 involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; the enzyme from Rhodobacter capsulatus contains an Fe-S cluster; part of a complex with BchI, BchD, and BchH; magnesium chelatase subunit H 1860128 bchH 6409389 bchH Rhodopseudomonas palustris TIE-1 magnesium chelatase subunit H YP_001990735.1 1856382 D 395960 CDS YP_001990736.1 192290131 6409390 1860125..1861063 1 NC_011004.1 light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production; protochlorophyllide reductase iron-sulfur ATP-binding protein 1861063 chlL 6409390 chlL Rhodopseudomonas palustris TIE-1 protochlorophyllide reductase iron-sulfur ATP-binding protein YP_001990736.1 1860125 D 395960 CDS YP_001990737.1 192290132 6409391 1861063..1861764 1 NC_011004.1 catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine; Mg-protoporphyrin IX methyl transferase 1861764 6409391 Rpal_1734 Rhodopseudomonas palustris TIE-1 Mg-protoporphyrin IX methyl transferase YP_001990737.1 1861063 D 395960 CDS YP_001990738.1 192290133 6409392 1861761..1863194 1 NC_011004.1 PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: bra:BRADO1644 photosynthetic complex (LH1) assembly protein LhaA, major facilitator superfamily (MFS) transporter; PUCC protein 1863194 6409392 Rpal_1735 Rhodopseudomonas palustris TIE-1 PUCC protein YP_001990738.1 1861761 D 395960 CDS YP_001990739.1 192290134 6409393 1863217..1863984 1 NC_011004.1 TIGRFAM: photosynthetic reaction center H subunit; PFAM: PRC-barrel domain protein; Photosynthetic reaction centre H subunit; KEGG: bbt:BBta_6411 reaction center protein H chain (photosynthetic reaction center H subunit); photosynthetic reaction center H subunit 1863984 6409393 Rpal_1736 Rhodopseudomonas palustris TIE-1 photosynthetic reaction center H subunit YP_001990739.1 1863217 D 395960 CDS YP_001990740.1 192290135 6409394 1863981..1864643 1 NC_011004.1 KEGG: mex:Mext_4809 photosynthetic complex assembly protein; photosynthetic complex assembly protein 1864643 6409394 Rpal_1737 Rhodopseudomonas palustris TIE-1 photosynthetic complex assembly protein YP_001990740.1 1863981 D 395960 CDS YP_001990741.1 192290136 6409395 1864659..1865165 1 NC_011004.1 TIGRFAM: photosynthetic complex assembly protein; KEGG: bbt:BBta_6409 hypothetical protein; photosynthetic complex assembly protein 1865165 6409395 Rpal_1738 Rhodopseudomonas palustris TIE-1 photosynthetic complex assembly protein YP_001990741.1 1864659 D 395960 CDS YP_001990742.1 192290137 6409396 1865168..1865467 1 NC_011004.1 KEGG: mex:Mext_4807 hypothetical protein; hypothetical protein 1865467 6409396 Rpal_1739 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990742.1 1865168 D 395960 CDS YP_001990743.1 192290138 6409397 1865464..1866561 1 NC_011004.1 oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis; magnesium-protoporphyrin IX monomethyl ester cyclase 1866561 6409397 Rpal_1740 Rhodopseudomonas palustris TIE-1 magnesium-protoporphyrin IX monomethyl ester cyclase YP_001990743.1 1865464 D 395960 CDS YP_001990744.1 192290139 6409398 1866575..1867639 1 NC_011004.1 TIGRFAM: photosynthetic complex assembly protein 2; KEGG: bra:BRADO1650 hypothetical protein; photosynthetic complex assembly protein 2 1867639 6409398 Rpal_1741 Rhodopseudomonas palustris TIE-1 photosynthetic complex assembly protein 2 YP_001990744.1 1866575 D 395960 CDS YP_001990745.1 192290140 6409399 1867636..1868847 1 NC_011004.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 1868847 6409399 Rpal_1742 Rhodopseudomonas palustris TIE-1 5-aminolevulinate synthase YP_001990745.1 1867636 D 395960 CDS YP_001990746.1 192290141 6409400 complement(1869189..1870157) 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nha:Nham_3755 transcriptional regulator, LysR family; LysR family transcriptional regulator 1870157 6409400 Rpal_1743 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001990746.1 1869189 R 395960 CDS YP_001990747.1 192290142 6409401 1870751..1871440 1 NC_011004.1 PFAM: response regulator receiver; KEGG: mlo:mlr6690 two-component response regulator; response regulator receiver protein 1871440 6409401 Rpal_1744 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001990747.1 1870751 D 395960 CDS YP_001990748.1 192290143 6409402 1871462..1872298 1 NC_011004.1 PFAM: response regulator receiver; KEGG: mac:MA4377 sensory transduction histidine kinase; response regulator receiver protein 1872298 6409402 Rpal_1745 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001990748.1 1871462 D 395960 CDS YP_001990749.1 192290144 6409403 1872314..1875025 1 NC_011004.1 KEGG: xac:XAC2492 two-component system sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 1875025 6409403 Rpal_1746 Rhodopseudomonas palustris TIE-1 multi-sensor hybrid histidine kinase YP_001990749.1 1872314 D 395960 CDS YP_001990750.1 192290145 6409404 1875226..1876683 1 NC_011004.1 type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase 1876683 rbcL 6409404 rbcL Rhodopseudomonas palustris TIE-1 ribulose bisophosphate carboxylase YP_001990750.1 1875226 D 395960 CDS YP_001990751.1 192290146 6409405 1876697..1877119 1 NC_011004.1 PFAM: ribulose bisphosphate carboxylase small chain; KEGG: bbt:BBta_6396 ribulose bisphosphate carboxylase small chain (RuBisCO small subunit); ribulose-bisphosphate carboxylase 1877119 6409405 Rpal_1748 Rhodopseudomonas palustris TIE-1 ribulose-bisphosphate carboxylase YP_001990751.1 1876697 D 395960 CDS YP_001990752.1 192290147 6409406 1877122..1878048 1 NC_011004.1 KEGG: bra:BRADO1661 CbbX-like protein, containing AAA-ATPase domain; TIGRFAM: CbbX protein; PFAM: ATPase AAA; SMART: ATPase AAA; CbbX protein 1878048 6409406 Rpal_1749 Rhodopseudomonas palustris TIE-1 CbbX protein YP_001990752.1 1877122 D 395960 CDS YP_001990753.1 192290148 6409407 complement(1878106..1879080) 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rle:pRL80074 LysR-family transcriptional regulator; LysR family transcriptional regulator 1879080 6409407 Rpal_1750 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001990753.1 1878106 R 395960 CDS YP_001990754.1 192290149 6409408 1879217..1880266 1 NC_011004.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mex:Mext_1157 nitrilase; nitrilase 1880266 6409408 Rpal_1751 Rhodopseudomonas palustris TIE-1 nitrilase YP_001990754.1 1879217 D 395960 CDS YP_001990755.1 192290150 6409409 1880342..1881658 1 NC_011004.1 KEGG: mpt:Mpe_A3673 UreA/short-chain amide transport system substrate-binding protein; UreA/short-chain amide transport system substrate-binding protein 1881658 6409409 Rpal_1752 Rhodopseudomonas palustris TIE-1 UreA/short-chain amide transport system substrate-binding protein YP_001990755.1 1880342 D 395960 CDS YP_001990756.1 192290151 6409410 1881667..1882542 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: nha:Nham_2810 inner-membrane translocator; inner-membrane translocator 1882542 6409410 Rpal_1753 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001990756.1 1881667 D 395960 CDS YP_001990757.1 192290152 6409411 1882539..1884404 1 NC_011004.1 PFAM: inner-membrane translocator; ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2809 ABC transporter; ABC transporter 1884404 6409411 Rpal_1754 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990757.1 1882539 D 395960 CDS YP_001990758.1 192290153 6409412 1884391..1885095 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2808 ABC transporter; ABC transporter 1885095 6409412 Rpal_1755 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990758.1 1884391 D 395960 CDS YP_001990759.1 192290154 6409413 complement(1885145..1885927) 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: bra:BRADO4874 conserved hypothetical protein; alpha/beta hydrolase fold-containing protein; alpha/beta hydrolase fold protein 1885927 6409413 Rpal_1756 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001990759.1 1885145 R 395960 CDS YP_001990760.1 192290155 6409414 complement(1885931..1887226) 1 NC_011004.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase 1887226 6409414 Rpal_1757 Rhodopseudomonas palustris TIE-1 O-acetylhomoserine aminocarboxypropyltransferase YP_001990760.1 1885931 R 395960 CDS YP_001990761.1 192290156 6409415 complement(1887378..1889495) 1 NC_011004.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: bra:BRADO6986 peptidase S9A family; protease II; oligopeptidase B 1889495 6409415 Rpal_1758 Rhodopseudomonas palustris TIE-1 oligopeptidase B YP_001990761.1 1887378 R 395960 CDS YP_001990762.1 192290157 6409416 1889626..1890501 1 NC_011004.1 PFAM: dihydrodipicolinate synthetase; KEGG: bja:bll7272 dihydrodipicolinate synthase; dihydrodipicolinate synthetase 1890501 6409416 Rpal_1759 Rhodopseudomonas palustris TIE-1 dihydrodipicolinate synthetase YP_001990762.1 1889626 D 395960 CDS YP_001990763.1 192290158 6409417 1890772..1893102 1 NC_011004.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bja:bll7271 carbon monoxide dehydrogenase large chain; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 1893102 6409417 Rpal_1760 Rhodopseudomonas palustris TIE-1 molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001990763.1 1890772 D 395960 CDS YP_001990764.1 192290159 6409418 1893180..1893794 1 NC_011004.1 PFAM: LemA family protein; KEGG: bja:bll7267 probable lipoprotein; LemA family protein 1893794 6409418 Rpal_1761 Rhodopseudomonas palustris TIE-1 LemA family protein YP_001990764.1 1893180 D 395960 CDS YP_001990765.1 192290160 6409419 1893799..1894722 1 NC_011004.1 PFAM: protein of unknown function DUF477; KEGG: bbt:BBta_6688 membrane protein of unknown function; hypothetical protein 1894722 6409419 Rpal_1762 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990765.1 1893799 D 395960 CDS YP_001990766.1 192290161 6409420 1894736..1895233 1 NC_011004.1 PFAM: protein of unknown function DUF477; KEGG: nha:Nham_3400 protein of unknown function DUF477; hypothetical protein 1895233 6409420 Rpal_1763 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990766.1 1894736 D 395960 CDS YP_001990767.1 192290162 6409421 complement(1895315..1895926) 1 NC_011004.1 PFAM: glutathione S-transferase domain; KEGG: pla:Plav_3102 glutathione S-transferase domain; glutathione S-transferase domain-containing protein 1895926 6409421 Rpal_1764 Rhodopseudomonas palustris TIE-1 glutathione S-transferase domain-containing protein YP_001990767.1 1895315 R 395960 CDS YP_001990768.1 192290163 6409422 1896135..1897106 1 NC_011004.1 KEGG: bja:bll7264 hypothetical protein; hypothetical protein 1897106 6409422 Rpal_1765 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990768.1 1896135 D 395960 CDS YP_001990769.1 192290164 6409423 complement(1897263..1898036) 1 NC_011004.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding protein; KEGG: bja:blr3195 ferredoxin NADP+ reductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 1898036 6409423 Rpal_1766 Rhodopseudomonas palustris TIE-1 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_001990769.1 1897263 R 395960 CDS YP_001990770.1 192290165 6409424 complement(1898355..1899563) 1 NC_011004.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbt:BBta_6680 acyl-coenzyme A transferase; L-carnitine dehydratase/bile acid-inducible protein F 1899563 6409424 Rpal_1767 Rhodopseudomonas palustris TIE-1 L-carnitine dehydratase/bile acid-inducible protein F YP_001990770.1 1898355 R 395960 CDS YP_001990771.1 192290166 6409425 complement(1899728..1902736) 1 NC_011004.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 1902736 6409425 Rpal_1768 Rhodopseudomonas palustris TIE-1 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_001990771.1 1899728 R 395960 CDS YP_001990772.1 192290167 6409426 1902881..1903528 1 NC_011004.1 KEGG: nha:Nham_3397 hypothetical protein; hypothetical protein 1903528 6409426 Rpal_1769 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990772.1 1902881 D 395960 CDS YP_001990773.1 192290168 6409427 complement(1903553..1905322) 1 NC_011004.1 PFAM: ferredoxin; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bra:BRADO1430 ferredoxin:adenylate/guanylate cyclase; adenylate/guanylate cyclase 1905322 6409427 Rpal_1770 Rhodopseudomonas palustris TIE-1 adenylate/guanylate cyclase YP_001990773.1 1903553 R 395960 CDS YP_001990774.1 192290169 6409428 complement(1905527..1906636) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bra:BRADO1432 hypothetical protein; hypothetical protein 1906636 6409428 Rpal_1771 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990774.1 1905527 R 395960 CDS YP_001990775.1 192290170 6409429 complement(1906633..1908102) 1 NC_011004.1 PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: nwi:Nwi_3019 YcjX-like protein; hypothetical protein 1908102 6409429 Rpal_1772 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990775.1 1906633 R 395960 CDS YP_001990776.1 192290171 6409430 1908346..1909041 1 NC_011004.1 PFAM: Hly-III family protein; KEGG: bbt:BBta_6673 hemmolysin III, HlyIII family; Hly-III family protein 1909041 6409430 Rpal_1773 Rhodopseudomonas palustris TIE-1 Hly-III family protein YP_001990776.1 1908346 D 395960 CDS YP_001990777.1 192290172 6409431 1909100..1909900 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:bll7251 dehydrogenase; short-chain dehydrogenase/reductase SDR 1909900 6409431 Rpal_1774 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001990777.1 1909100 D 395960 CDS YP_001990778.1 192290173 6409432 1910098..1910382 1 NC_011004.1 KEGG: nha:Nham_2128 hypothetical protein; hypothetical protein 1910382 6409432 Rpal_1775 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990778.1 1910098 D 395960 CDS YP_001990779.1 192290174 6409433 complement(1910386..1911468) 1 NC_011004.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bra:BRADO2796 L-allo-threonine aldolase; aromatic amino acid beta-eliminating lyase/threonine aldolase 1911468 6409433 Rpal_1776 Rhodopseudomonas palustris TIE-1 aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001990779.1 1910386 R 395960 CDS YP_001990780.1 192290175 6409434 complement(1911781..1912398) 1 NC_011004.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1912398 rpsD 6409434 rpsD Rhodopseudomonas palustris TIE-1 30S ribosomal protein S4 YP_001990780.1 1911781 R 395960 CDS YP_001990781.1 192290176 6409435 complement(1912588..1913364) 1 NC_011004.1 KEGG: bja:blr5705 hypothetical protein; hypothetical protein 1913364 6409435 Rpal_1778 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990781.1 1912588 R 395960 CDS YP_001990782.1 192290177 6409436 complement(1913364..1913759) 1 NC_011004.1 PFAM: cupin; KEGG: bja:blr5704 hypothetical protein; cupin 1913759 6409436 Rpal_1779 Rhodopseudomonas palustris TIE-1 cupin YP_001990782.1 1913364 R 395960 CDS YP_001990783.1 192290178 6409437 complement(1913811..1914605) 1 NC_011004.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1914605 6409437 Rpal_1780 Rhodopseudomonas palustris TIE-1 glutamate racemase YP_001990783.1 1913811 R 395960 CDS YP_001990784.1 192290179 6409438 complement(1914688..1915176) 1 NC_011004.1 PFAM: thioesterase superfamily protein; KEGG: bra:BRADO2784 conserved hypothetical protein; thioesterase superfamily; thioesterase superfamily protein 1915176 6409438 Rpal_1781 Rhodopseudomonas palustris TIE-1 thioesterase superfamily protein YP_001990784.1 1914688 R 395960 CDS YP_001990785.1 192290180 6409439 1915331..1916695 1 NC_011004.1 catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 1916695 6409439 Rpal_1782 Rhodopseudomonas palustris TIE-1 tryptophan synthase subunit beta YP_001990785.1 1915331 D 395960 CDS YP_001990786.1 192290181 6409440 1917033..1917983 1 NC_011004.1 SMART: TIR protein; KEGG: xac:XAC3296 hypothetical protein; TIR protein 1917983 6409440 Rpal_1783 Rhodopseudomonas palustris TIE-1 TIR protein YP_001990786.1 1917033 D 395960 CDS YP_001990787.1 192290182 6409441 1917986..1918447 1 NC_011004.1 hypothetical protein 1918447 6409441 Rpal_1784 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990787.1 1917986 D 395960 CDS YP_001990788.1 192290183 6409443 1919146..1921356 1 NC_011004.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 1921356 6409443 Rpal_1786 Rhodopseudomonas palustris TIE-1 phosphoribosylformylglycinamidine synthase II YP_001990788.1 1919146 D 395960 CDS YP_001990789.1 192290184 6409444 complement(1921602..1922783) 1 NC_011004.1 PFAM: acyltransferase 3; KEGG: bbt:BBta_5400 membrane protein of unknown function with acyltransferase family protein domain; acyltransferase 3 1922783 6409444 Rpal_1787 Rhodopseudomonas palustris TIE-1 acyltransferase 3 YP_001990789.1 1921602 R 395960 CDS YP_001990790.1 192290185 6409445 complement(1922858..1923220) 1 NC_011004.1 PFAM: protein of unknown function DUF427; KEGG: bbt:BBta_5398 hypothetical protein; hypothetical protein 1923220 6409445 Rpal_1788 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990790.1 1922858 R 395960 CDS YP_001990791.1 192290186 6409446 1923383..1923619 1 NC_011004.1 PFAM: BolA family protein; KEGG: bja:bsl5715 hypothetical protein; BolA family protein 1923619 6409446 Rpal_1789 Rhodopseudomonas palustris TIE-1 BolA family protein YP_001990791.1 1923383 D 395960 CDS YP_001990792.1 192290187 6409447 complement(1923694..1924218) 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: bja:blr4984 transcriptional regulatory protein; MarR family transcriptional regulator 1924218 6409447 Rpal_1790 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001990792.1 1923694 R 395960 CDS YP_001990793.1 192290188 6409448 complement(1924402..1924773) 1 NC_011004.1 KEGG: nha:Nham_4529 hypothetical protein; hypothetical protein 1924773 6409448 Rpal_1791 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990793.1 1924402 R 395960 CDS YP_001990794.1 192290189 6409449 1924892..1925614 1 NC_011004.1 KEGG: mrd:Mrad2831_4407 hypothetical protein; hypothetical protein 1925614 6409449 Rpal_1792 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990794.1 1924892 D 395960 CDS YP_001990795.1 192290190 6409450 complement(1925670..1926743) 1 NC_011004.1 PFAM: fatty acid desaturase; KEGG: nha:Nham_1170 fatty acid desaturase; fatty acid desaturase 1926743 6409450 Rpal_1793 Rhodopseudomonas palustris TIE-1 fatty acid desaturase YP_001990795.1 1925670 R 395960 CDS YP_001990796.1 192290191 6409451 complement(1927098..1928078) 1 NC_011004.1 TIGRFAM: methyltransferase; KEGG: nha:Nham_1639 hypothetical protein; methyltransferase 1928078 6409451 Rpal_1794 Rhodopseudomonas palustris TIE-1 methyltransferase YP_001990796.1 1927098 R 395960 CDS YP_001990797.1 192290192 6409452 complement(1928123..1929376) 1 NC_011004.1 PFAM: protein of unknown function DUF323; KEGG: bbt:BBta_5394 exported protein of unknown function; hypothetical protein 1929376 6409452 Rpal_1795 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990797.1 1928123 R 395960 CDS YP_001990798.1 192290193 6409453 1929667..1929993 1 NC_011004.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: bra:BRADO2793 glutaredoxin family protein; glutaredoxin-like protein 1929993 6409453 Rpal_1796 Rhodopseudomonas palustris TIE-1 glutaredoxin-like protein YP_001990798.1 1929667 D 395960 CDS YP_001990799.1 192290194 6409454 1929990..1930532 1 NC_011004.1 PFAM: Appr-1-p processing domain protein; KEGG: bja:bll5710 hypothetical protein; Appr-1-p processing protein 1930532 6409454 Rpal_1797 Rhodopseudomonas palustris TIE-1 Appr-1-p processing protein YP_001990799.1 1929990 D 395960 CDS YP_001990800.1 192290195 6409455 1930592..1931872 1 NC_011004.1 PFAM: beta-lactamase; KEGG: bja:bll5709 hypothetical protein; beta-lactamase 1931872 6409455 Rpal_1798 Rhodopseudomonas palustris TIE-1 beta-lactamase YP_001990800.1 1930592 D 395960 CDS YP_001990801.1 192290196 6409456 complement(1931883..1933511) 1 NC_011004.1 catalyzes the formation of benzaldehyde from benzoylformate; benzoylformate decarboxylase 1933511 6409456 Rpal_1799 Rhodopseudomonas palustris TIE-1 benzoylformate decarboxylase YP_001990801.1 1931883 R 395960 CDS YP_001990802.1 192290197 6409457 complement(1933779..1934636) 1 NC_011004.1 KEGG: bra:BRADO1440 hypothetical protein; hypothetical protein 1934636 6409457 Rpal_1800 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990802.1 1933779 R 395960 CDS YP_001990803.1 192290198 6409458 complement(1934649..1935743) 1 NC_011004.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bra:BRADO1441 formyl-coenzyme A transferase NAD(P)-binding; L-carnitine dehydratase/bile acid-inducible protein F 1935743 6409458 Rpal_1801 Rhodopseudomonas palustris TIE-1 L-carnitine dehydratase/bile acid-inducible protein F YP_001990803.1 1934649 R 395960 CDS YP_001990804.1 192290199 6409459 complement(1935944..1937116) 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bra:BRADO1442 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1937116 6409459 Rpal_1802 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001990804.1 1935944 R 395960 CDS YP_001990805.1 192290200 6409460 complement(1937151..1938416) 1 NC_011004.1 PFAM: cytochrome P450; KEGG: bja:blr7243 cytochrome P450; cytochrome P450 1938416 6409460 Rpal_1803 Rhodopseudomonas palustris TIE-1 cytochrome P450 YP_001990805.1 1937151 R 395960 CDS YP_001990806.1 192290201 6409461 1938764..1939936 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_6658 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1939936 6409461 Rpal_1804 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001990806.1 1938764 D 395960 CDS YP_001990807.1 192290202 6409462 1940032..1940826 1 NC_011004.1 PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: rle:RL3009 methyltransferase; type 11 methyltransferase 1940826 6409462 Rpal_1805 Rhodopseudomonas palustris TIE-1 type 11 methyltransferase YP_001990807.1 1940032 D 395960 CDS YP_001990808.1 192290203 6409463 complement(1940823..1941647) 1 NC_011004.1 KEGG: bbt:BBta_6655 exported protein of unknown function; hypothetical protein 1941647 6409463 Rpal_1806 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990808.1 1940823 R 395960 CDS YP_001990809.1 192290204 6409464 complement(1941716..1942297) 1 NC_011004.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bbt:BBta_6654 exported protein of unknown function; ErfK/YbiS/YcfS/YnhG family protein 1942297 6409464 Rpal_1807 Rhodopseudomonas palustris TIE-1 ErfK/YbiS/YcfS/YnhG family protein YP_001990809.1 1941716 R 395960 CDS YP_001990810.1 192290205 6409465 1942478..1944022 1 NC_011004.1 thiamine-pyrophosphate requiring enzyme; hypothetical protein 1944022 6409465 Rpal_1808 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990810.1 1942478 D 395960 CDS YP_001990811.1 192290206 6409466 1944135..1944566 1 NC_011004.1 KEGG: bja:bll7047 hypothetical protein; hypothetical protein 1944566 6409466 Rpal_1809 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990811.1 1944135 D 395960 CDS YP_001990812.1 192290207 6409467 complement(1944732..1945052) 1 NC_011004.1 hypothetical protein 1945052 6409467 Rpal_1810 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990812.1 1944732 R 395960 CDS YP_001990813.1 192290208 6409470 complement(1946279..1947559) 1 NC_011004.1 KEGG: bja:bll2188 hypothetical protein; hypothetical protein 1947559 6409470 Rpal_1812 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990813.1 1946279 R 395960 CDS YP_001990814.1 192290209 6409471 complement(1947800..1948393) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bja:bll2189 hypothetical protein; hypothetical protein 1948393 6409471 Rpal_1813 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990814.1 1947800 R 395960 CDS YP_001990815.1 192290210 6409472 1948501..1949007 1 NC_011004.1 KEGG: nha:Nham_3379 hypothetical protein; hypothetical protein 1949007 6409472 Rpal_1814 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990815.1 1948501 D 395960 CDS YP_001990816.1 192290211 6409473 complement(1949016..1949843) 1 NC_011004.1 PFAM: inositol monophosphatase; KEGG: nwi:Nwi_0518 inositol monophosphatase; inositol monophosphatase 1949843 6409473 Rpal_1815 Rhodopseudomonas palustris TIE-1 inositol monophosphatase YP_001990816.1 1949016 R 395960 CDS YP_001990817.1 192290212 6409474 1949977..1950633 1 NC_011004.1 KEGG: bja:blr2191 hypothetical protein; hypothetical protein 1950633 6409474 Rpal_1816 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990817.1 1949977 D 395960 CDS YP_001990818.1 192290213 6409475 1950824..1953637 1 NC_011004.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: bbt:BBta_0524 chemotaxis protein CheA; CheA signal transduction histidine kinase 1953637 6409475 Rpal_1817 Rhodopseudomonas palustris TIE-1 CheA signal transduction histidine kinase YP_001990818.1 1950824 D 395960 CDS YP_001990819.1 192290214 6409476 1953634..1954134 1 NC_011004.1 PFAM: CheW domain protein; KEGG: bra:BRADO1474 chemotaxis protein CheW; CheW protein 1954134 6409476 Rpal_1818 Rhodopseudomonas palustris TIE-1 CheW protein YP_001990819.1 1953634 D 395960 CDS YP_001990820.1 192290215 6409477 1954202..1954567 1 NC_011004.1 PFAM: response regulator receiver; KEGG: bra:BRADO1475 chemotaxis protein CheY; response regulator receiver protein 1954567 6409477 Rpal_1819 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001990820.1 1954202 D 395960 CDS YP_001990821.1 192290216 6409478 1954709..1955821 1 NC_011004.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1955821 6409478 Rpal_1820 Rhodopseudomonas palustris TIE-1 chemotaxis-specific methylesterase YP_001990821.1 1954709 D 395960 CDS YP_001990822.1 192290217 6409479 1955818..1956696 1 NC_011004.1 PFAM: MCP methyltransferase CheR-type; KEGG: nha:Nham_3372 MCP methyltransferase, CheR-type; CheR-type MCP methyltransferase 1956696 6409479 Rpal_1821 Rhodopseudomonas palustris TIE-1 CheR-type MCP methyltransferase YP_001990822.1 1955818 D 395960 CDS YP_001990823.1 192290218 6409480 complement(1956997..1957698) 1 NC_011004.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_3371 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 1957698 6409480 Rpal_1822 Rhodopseudomonas palustris TIE-1 winged helix family two component transcriptional regulator YP_001990823.1 1956997 R 395960 CDS YP_001990824.1 192290219 6409481 1958066..1959391 1 NC_011004.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1959391 fliI 6409481 fliI Rhodopseudomonas palustris TIE-1 flagellum-specific ATP synthase YP_001990824.1 1958066 D 395960 CDS YP_001990825.1 192290220 6409482 1959501..1959929 1 NC_011004.1 TIGRFAM: flagellar export protein FliJ; KEGG: bra:BRADO1499 flagelar FliJ protein; flagellar export protein FliJ 1959929 6409482 Rpal_1824 Rhodopseudomonas palustris TIE-1 flagellar export protein FliJ YP_001990825.1 1959501 D 395960 CDS YP_001990826.1 192290221 6409483 1960105..1960653 1 NC_011004.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bra:BRADO1500 RNA polymerase ECF-type sigma factor; ECF subfamily RNA polymerase sigma-24 subunit 1960653 6409483 Rpal_1825 Rhodopseudomonas palustris TIE-1 ECF subfamily RNA polymerase sigma-24 subunit YP_001990826.1 1960105 D 395960 CDS YP_001990827.1 192290222 6409484 1960653..1961600 1 NC_011004.1 KEGG: bbt:BBta_6529 hypothetical protein; hypothetical protein 1961600 6409484 Rpal_1826 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990827.1 1960653 D 395960 CDS YP_001990828.1 192290223 6409485 complement(1961798..1961998) 1 NC_011004.1 KEGG: bbt:BBta_6528 exported protein of unknown function; hypothetical protein 1961998 6409485 Rpal_1827 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990828.1 1961798 R 395960 CDS YP_001990829.1 192290224 6409486 complement(1962330..1964462) 1 NC_011004.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1964462 flhA 6409486 flhA Rhodopseudomonas palustris TIE-1 flagellar biosynthesis protein FlhA YP_001990829.1 1962330 R 395960 CDS YP_001990830.1 192290225 6409487 1964725..1965969 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr2214 hypothetical protein; major facilitator superfamily protein 1965969 6409487 Rpal_1829 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001990830.1 1964725 D 395960 CDS YP_001990831.1 192290226 6409488 complement(1966061..1967752) 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bra:BRADO2556 sensory transducer protein; signal peptide; methyl-accepting chemotaxis sensory transducer 1967752 6409488 Rpal_1830 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001990831.1 1966061 R 395960 CDS YP_001990832.1 192290227 6409490 1968531..1969589 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mlo:mlr6727 transcriptional regulator; AraC family transcriptional regulator 1969589 6409490 Rpal_1831 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001990832.1 1968531 D 395960 CDS YP_001990833.1 192290228 6409491 1969970..1971484 1 NC_011004.1 TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; Hemerythrin HHE cation binding domain protein; KEGG: nwi:Nwi_1658 diguanylate cyclase; diguanylate cyclase 1971484 6409491 Rpal_1832 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001990833.1 1969970 D 395960 CDS YP_001990834.1 192290229 6409492 complement(1971517..1971636) 1 NC_011004.1 hypothetical protein 1971636 6409492 Rpal_1833 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990834.1 1971517 R 395960 CDS YP_001990835.1 192290230 6409493 1971681..1972547 1 NC_011004.1 PFAM: iron permease FTR1; KEGG: bcs:BCAN_B0386 ferrous iron permease EfeU; iron permease FTR1 1972547 6409493 Rpal_1834 Rhodopseudomonas palustris TIE-1 iron permease FTR1 YP_001990835.1 1971681 D 395960 CDS YP_001990836.1 192290231 6409494 complement(1972538..1973248) 1 NC_011004.1 PFAM: transglutaminase domain protein; KEGG: abo:ABO_0204 hypothetical protein; transglutaminase domain-containing protein 1973248 6409494 Rpal_1835 Rhodopseudomonas palustris TIE-1 transglutaminase domain-containing protein YP_001990836.1 1972538 R 395960 CDS YP_001990837.1 192290232 6409495 complement(1973277..1973504) 1 NC_011004.1 hypothetical protein 1973504 6409495 Rpal_1836 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990837.1 1973277 R 395960 CDS YP_001990838.1 192290233 6409496 complement(1973603..1973872) 1 NC_011004.1 KEGG: nha:Nham_2805 hypothetical protein; hypothetical protein 1973872 6409496 Rpal_1837 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990838.1 1973603 R 395960 CDS YP_001990839.1 192290234 6409497 complement(1973949..1974950) 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: bra:BRADO6133 alpha/beta hydrolase; haloalkane dehalogenase; alpha/beta hydrolase fold protein 1974950 6409497 Rpal_1838 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001990839.1 1973949 R 395960 CDS YP_001990840.1 192290235 6409498 1975103..1976365 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xau:Xaut_4226 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit 1976365 6409498 Rpal_1839 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001990840.1 1975103 D 395960 CDS YP_001990841.1 192290236 6409499 1976362..1977588 1 NC_011004.1 PFAM: protein of unknown function DUF214; KEGG: bbt:BBta_1848 lipoprotein-releasing system transmembrane protein LolC; hypothetical protein 1977588 6409499 Rpal_1840 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990841.1 1976362 D 395960 CDS YP_001990842.1 192290237 6409500 1977581..1978261 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: xau:Xaut_4228 ABC transporter; ABC transporter 1978261 6409500 Rpal_1841 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990842.1 1977581 D 395960 CDS YP_001990843.1 192290238 6409501 complement(1978361..1979578) 1 NC_011004.1 KEGG: bja:blr4312 hypothetical protein; hypothetical protein 1979578 6409501 Rpal_1842 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990843.1 1978361 R 395960 CDS YP_001990844.1 192290239 6409502 1980183..1981004 1 NC_011004.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mrd:Mrad2831_3689 protein of unknown function DUF1078 domain protein; hypothetical protein 1981004 6409502 Rpal_1843 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990844.1 1980183 D 395960 CDS YP_001990845.1 192290240 6409503 complement(1981136..1981876) 1 NC_011004.1 hypothetical protein 1981876 6409503 Rpal_1844 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990845.1 1981136 R 395960 CDS YP_001990846.1 192290241 6409504 1982223..1983188 1 NC_011004.1 KEGG: sde:Sde_0514 hypothetical protein; hypothetical protein 1983188 6409504 Rpal_1845 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990846.1 1982223 D 395960 CDS YP_001990847.1 192290242 6409505 1983232..1985118 1 NC_011004.1 KEGG: sde:Sde_0513 D-tyrosyl-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase 1985118 6409505 Rpal_1846 Rhodopseudomonas palustris TIE-1 D-tyrosyl-tRNA(Tyr) deacylase YP_001990847.1 1983232 D 395960 CDS YP_001990848.1 192290243 6409506 1985212..1985598 1 NC_011004.1 KEGG: rle:pRL100171 rhizosphere induced protein; rhizosphere induced protein 1985598 6409506 Rpal_1847 Rhodopseudomonas palustris TIE-1 rhizosphere induced protein YP_001990848.1 1985212 D 395960 CDS YP_001990849.1 192290244 6409507 complement(1985602..1986063) 1 NC_011004.1 KEGG: bra:BRADO3674 hypothetical protein; hypothetical protein 1986063 6409507 Rpal_1848 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990849.1 1985602 R 395960 CDS YP_001990850.1 192290245 6409508 complement(1986198..1987211) 1 NC_011004.1 PFAM: aldo/keto reductase; KEGG: bbt:BBta_0931 oxidoreductase (aldo/keto reductase); aldo/keto reductase 1987211 6409508 Rpal_1849 Rhodopseudomonas palustris TIE-1 aldo/keto reductase YP_001990850.1 1986198 R 395960 CDS YP_001990851.1 192290246 6409509 complement(1987372..1988580) 1 NC_011004.1 KEGG: bja:bll2304 probable ABC transporter substrate-binding protein; ABC transporter substrate-binding protein 1988580 6409509 Rpal_1850 Rhodopseudomonas palustris TIE-1 ABC transporter substrate-binding protein YP_001990851.1 1987372 R 395960 CDS YP_001990852.1 192290247 6409510 1988683..1989378 1 NC_011004.1 PFAM: high-affinity nickel-transporter; KEGG: sal:Sala_3212 high-affinity nickel-transporter; high-affinity nickel-transporter 1989378 6409510 Rpal_1851 Rhodopseudomonas palustris TIE-1 high-affinity nickel-transporter YP_001990852.1 1988683 D 395960 CDS YP_001990853.1 192290248 6409511 complement(1989409..1990623) 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: nha:Nham_2861 diguanylate cyclase (GGDEF domain); diguanylate cyclase 1990623 6409511 Rpal_1852 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001990853.1 1989409 R 395960 CDS YP_001990854.1 192290249 6409512 1990996..1991193 1 NC_011004.1 KEGG: bja:blr5311 probable histon H1; histone H1 1991193 6409512 Rpal_1853 Rhodopseudomonas palustris TIE-1 histone H1 YP_001990854.1 1990996 D 395960 CDS YP_001990855.1 192290250 6409513 1991402..1991764 1 NC_011004.1 TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: azc:AZC_1071 hypothetical protein; queuosine biosynthesis protein QueD 1991764 6409513 Rpal_1854 Rhodopseudomonas palustris TIE-1 queuosine biosynthesis protein QueD YP_001990855.1 1991402 D 395960 CDS YP_001990856.1 192290251 6409514 complement(1991831..1992421) 1 NC_011004.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: bbt:BBta_4024 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 1992421 6409514 Rpal_1855 Rhodopseudomonas palustris TIE-1 hemerythrin HHE cation binding domain-containing protein YP_001990856.1 1991831 R 395960 CDS YP_001990857.1 192290252 6409515 complement(1992563..1995484) 1 NC_011004.1 KEGG: bbt:BBta_0206 copper-transporting P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; ATPase P 1995484 6409515 Rpal_1856 Rhodopseudomonas palustris TIE-1 ATPase P YP_001990857.1 1992563 R 395960 CDS YP_001990858.1 192290253 6409516 1995536..1995811 1 NC_011004.1 PFAM: protein of unknown function DUF156; KEGG: bbt:BBta_0207 hypothetical protein; hypothetical protein 1995811 6409516 Rpal_1857 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990858.1 1995536 D 395960 CDS YP_001990859.1 192290254 6409517 complement(1995842..1996522) 1 NC_011004.1 KEGG: nha:Nham_0414 hypothetical protein; hypothetical protein 1996522 6409517 Rpal_1858 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990859.1 1995842 R 395960 CDS YP_001990860.1 192290255 6409518 complement(1996630..1997481) 1 NC_011004.1 KEGG: vvy:VV1588 hypothetical protein; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1997481 6409518 Rpal_1859 Rhodopseudomonas palustris TIE-1 3,4-dihydroxyphenylacetate 2,3-dioxygenase YP_001990860.1 1996630 R 395960 CDS YP_001990861.1 192290256 6409519 complement(1997509..1998051) 1 NC_011004.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bra:BRADO6298 glyoxalase/bleomycin resistance protein/dioxygenase domain; glyoxalase/bleomycin resistance protein/dioxygenase 1998051 6409519 Rpal_1860 Rhodopseudomonas palustris TIE-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001990861.1 1997509 R 395960 CDS YP_001990862.1 192290257 6409520 complement(1998207..1998509) 1 NC_011004.1 hypothetical protein 1998509 6409520 Rpal_1861 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990862.1 1998207 R 395960 CDS YP_001990863.1 192290258 6409521 complement(1998764..2000113) 1 NC_011004.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2000113 6409521 Rpal_1862 Rhodopseudomonas palustris TIE-1 coproporphyrinogen III oxidase YP_001990863.1 1998764 R 395960 CDS YP_001990864.1 192290259 6409522 complement(2000142..2000852) 1 NC_011004.1 TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase 4VR; KEGG: bra:BRADO1653 4-vinyl protochlorophyllide reductase (bacteriochlorophyll synthase 23 kDa chain) (4-vinyl reductase); bacteriochlorophyll 4-vinyl reductase 2000852 6409522 Rpal_1863 Rhodopseudomonas palustris TIE-1 bacteriochlorophyll 4-vinyl reductase YP_001990864.1 2000142 R 395960 CDS YP_001990865.1 192290260 6409523 complement(2000824..2002521) 1 NC_011004.1 KEGG: bbt:BBta_6404 Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD subunit; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 2002521 6409523 Rpal_1864 Rhodopseudomonas palustris TIE-1 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase YP_001990865.1 2000824 R 395960 CDS YP_001990866.1 192290261 6409524 complement(2002679..2003107) 1 NC_011004.1 KEGG: bbt:BBta_0349 hypothetical protein; hypothetical protein 2003107 6409524 Rpal_1865 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990866.1 2002679 R 395960 CDS YP_001990867.1 192290262 6409525 2003329..2004069 1 NC_011004.1 PFAM: metallophosphoesterase; KEGG: bja:bll5683 probable serine/threonine phosphatase; metallophosphoesterase 2004069 6409525 Rpal_1866 Rhodopseudomonas palustris TIE-1 metallophosphoesterase YP_001990867.1 2003329 D 395960 CDS YP_001990868.1 192290263 6409526 2004073..2005512 1 NC_011004.1 PFAM: UspA domain protein; Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: bbt:BBta_5336 serine/threonine protein kinase; serine/threonine protein kinase 2005512 6409526 Rpal_1867 Rhodopseudomonas palustris TIE-1 serine/threonine protein kinase YP_001990868.1 2004073 D 395960 CDS YP_001990869.1 192290264 6409527 complement(2005558..2006208) 1 NC_011004.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: nha:Nham_1909 transport-associated; transport-associated 2006208 6409527 Rpal_1868 Rhodopseudomonas palustris TIE-1 transport-associated YP_001990869.1 2005558 R 395960 CDS YP_001990870.1 192290265 6409528 2006587..2008938 1 NC_011004.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: pna:Pnap_4497 fructose-6-phosphate phosphoketolase; phosphoketolase 2008938 6409528 Rpal_1869 Rhodopseudomonas palustris TIE-1 phosphoketolase YP_001990870.1 2006587 D 395960 CDS YP_001990871.1 192290266 6409529 2009116..2009619 1 NC_011004.1 PFAM: response regulator receiver; KEGG: bbt:BBta_0529 response regulator receiver protein; response regulator receiver protein 2009619 6409529 Rpal_1870 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001990871.1 2009116 D 395960 CDS YP_001990872.1 192290267 6409530 2010264..2012414 1 NC_011004.1 KEGG: bbt:BBta_1536 methyl-accepting chemotaxis protein with PAS domain; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 2012414 6409530 Rpal_1871 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_001990872.1 2010264 D 395960 CDS YP_001990873.1 192290268 6409531 2012593..2015406 1 NC_011004.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: bbt:BBta_0524 chemotaxis protein CheA; CheA signal transduction histidine kinase 2015406 6409531 Rpal_1872 Rhodopseudomonas palustris TIE-1 CheA signal transduction histidine kinase YP_001990873.1 2012593 D 395960 CDS YP_001990874.1 192290269 6409532 2015403..2015903 1 NC_011004.1 PFAM: CheW domain protein; KEGG: bra:BRADO1474 chemotaxis protein CheW; CheW protein 2015903 6409532 Rpal_1873 Rhodopseudomonas palustris TIE-1 CheW protein YP_001990874.1 2015403 D 395960 CDS YP_001990875.1 192290270 6409533 2015957..2016832 1 NC_011004.1 PFAM: MCP methyltransferase CheR-type; KEGG: bja:bll0390 protein-glutamate O-methyltransferase; CheR-type MCP methyltransferase 2016832 6409533 Rpal_1874 Rhodopseudomonas palustris TIE-1 CheR-type MCP methyltransferase YP_001990875.1 2015957 D 395960 CDS YP_001990876.1 192290271 6409534 2016844..2017158 1 NC_011004.1 KEGG: bra:BRADO6999 hypothetical protein; hypothetical protein 2017158 6409534 Rpal_1875 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990876.1 2016844 D 395960 CDS YP_001990877.1 192290272 6409535 2017387..2018637 1 NC_011004.1 PFAM: EAL domain protein; response regulator receiver; KEGG: rru:Rru_A3494 diguanylate phosphodiesterase (EAL domain) with response regulator receiver modulation; response regulator receiver modulated diguanylate phosphodiesterase 2018637 6409535 Rpal_1876 Rhodopseudomonas palustris TIE-1 response regulator receiver modulated diguanylate phosphodiesterase YP_001990877.1 2017387 D 395960 CDS YP_001990878.1 192290273 6409536 complement(2018668..2021259) 1 NC_011004.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: bra:BRADO7010 sensor histidine kinase with a response regulator receiver domain and a phosphotransferase (HPt) domain; multi-sensor hybrid histidine kinase 2021259 6409536 Rpal_1877 Rhodopseudomonas palustris TIE-1 multi-sensor hybrid histidine kinase YP_001990878.1 2018668 R 395960 CDS YP_001990879.1 192290274 6409537 2021682..2022308 1 NC_011004.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bra:BRADO6997 two-component transcriptional regulator, LuxR family; LuxR family transcriptional regulator 2022308 6409537 Rpal_1878 Rhodopseudomonas palustris TIE-1 LuxR family transcriptional regulator YP_001990879.1 2021682 D 395960 CDS YP_001990880.1 192290275 6409538 complement(2022359..2023141) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_1210 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR 2023141 6409538 Rpal_1879 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001990880.1 2022359 R 395960 CDS YP_001990881.1 192290276 6409539 2023250..2024011 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO6422 short-chain dehydrogenase/reductase protein; 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase); short-chain dehydrogenase/reductase SDR 2024011 6409539 Rpal_1880 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001990881.1 2023250 D 395960 CDS YP_001990882.1 192290277 6409540 2024496..2029094 1 NC_011004.1 TIGRFAM: polymorphic outer membrane protein; outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: nha:Nham_3087 outer membrane autotransporter barrel; outer membrane autotransporter barrel domain-containing protein 2029094 6409540 Rpal_1881 Rhodopseudomonas palustris TIE-1 outer membrane autotransporter barrel domain-containing protein YP_001990882.1 2024496 D 395960 CDS YP_001990883.1 192290278 6409541 complement(2029247..2030851) 1 NC_011004.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bra:BRADO6420 glucose-methanol-choline oxidoreductase family protein; glucose-methanol-choline oxidoreductase 2030851 6409541 Rpal_1882 Rhodopseudomonas palustris TIE-1 glucose-methanol-choline oxidoreductase YP_001990883.1 2029247 R 395960 CDS YP_001990884.1 192290279 6409542 complement(2030922..2032355) 1 NC_011004.1 PFAM: Aldehyde Dehydrogenase_; KEGG: bja:blr7884 probable coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase 2032355 6409542 Rpal_1883 Rhodopseudomonas palustris TIE-1 aldehyde dehydrogenase YP_001990884.1 2030922 R 395960 CDS YP_001990885.1 192290280 6409544 2032940..2033461 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nwi:Nwi_0836 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2033461 6409544 Rpal_1884 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001990885.1 2032940 D 395960 CDS YP_001990886.1 192290281 6409545 2033582..2033716 1 NC_011004.1 hypothetical protein 2033716 6409545 Rpal_1885 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990886.1 2033582 D 395960 CDS YP_001990887.1 192290282 6409546 2033788..2034951 1 NC_011004.1 KEGG: bja:bll7778 hypothetical protein; hypothetical protein 2034951 6409546 Rpal_1886 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990887.1 2033788 D 395960 CDS YP_001990888.1 192290283 6409547 complement(2034948..2035388) 1 NC_011004.1 KEGG: nwi:Nwi_0912 hypothetical protein; hypothetical protein 2035388 6409547 Rpal_1887 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990888.1 2034948 R 395960 CDS YP_001990889.1 192290284 6409548 complement(2035520..2036893) 1 NC_011004.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bja:blr7776 probable cation efflux system protein; MATE efflux family protein 2036893 6409548 Rpal_1888 Rhodopseudomonas palustris TIE-1 MATE efflux family protein YP_001990889.1 2035520 R 395960 CDS YP_001990890.1 192290285 6409549 2037168..2038403 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A1891 permease of the major facilitator superfamily; major facilitator superfamily protein 2038403 6409549 Rpal_1889 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001990890.1 2037168 D 395960 CDS YP_001990891.1 192290286 6409550 2038605..2039201 1 NC_011004.1 PFAM: manganese and iron superoxide dismutase; KEGG: bra:BRADO6273 superoxide dismutase, iron/manganese cofactor; Superoxide dismutase 2039201 6409550 Rpal_1890 Rhodopseudomonas palustris TIE-1 Superoxide dismutase YP_001990891.1 2038605 D 395960 CDS YP_001990892.1 192290287 6409551 2039354..2039728 1 NC_011004.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2039728 6409551 Rpal_1891 Rhodopseudomonas palustris TIE-1 camphor resistance protein CrcB YP_001990892.1 2039354 D 395960 CDS YP_001990893.1 192290288 6409552 complement(2039796..2040656) 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bbr:BB0428 probable transcriptional regulator; AraC family transcriptional regulator 2040656 6409552 Rpal_1892 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001990893.1 2039796 R 395960 CDS YP_001990894.1 192290289 6409554 2041076..2041711 1 NC_011004.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: azc:AZC_3390 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 2041711 6409554 Rpal_1894 Rhodopseudomonas palustris TIE-1 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001990894.1 2041076 D 395960 CDS YP_001990895.1 192290290 6409557 complement(2042527..2043015) 1 NC_011004.1 PFAM: CinA domain protein; KEGG: bja:blr7909 hypothetical protein; CinA domain-containing protein 2043015 6409557 Rpal_1897 Rhodopseudomonas palustris TIE-1 CinA domain-containing protein YP_001990895.1 2042527 R 395960 CDS YP_001990896.1 192290291 6409558 complement(2043133..2043876) 1 NC_011004.1 PFAM: protein of unknown function DUF81; KEGG: bja:blr6618 hypothetical protein; hypothetical protein 2043876 6409558 Rpal_1898 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990896.1 2043133 R 395960 CDS YP_001990897.1 192290292 6409559 2044022..2045809 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:bll7899 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2045809 6409559 Rpal_1899 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001990897.1 2044022 D 395960 CDS YP_001990898.1 192290293 6409560 complement(2045944..2047416) 1 NC_011004.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2047416 6409560 Rpal_1900 Rhodopseudomonas palustris TIE-1 amidase YP_001990898.1 2045944 R 395960 CDS YP_001990899.1 192290294 6409561 complement(2047828..2048682) 1 NC_011004.1 KEGG: nha:Nham_2429 hypothetical protein; hypothetical protein 2048682 6409561 Rpal_1901 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990899.1 2047828 R 395960 CDS YP_001990900.1 192290295 6409562 complement(2048787..2050343) 1 NC_011004.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2050343 6409562 Rpal_1902 Rhodopseudomonas palustris TIE-1 long-chain-fatty-acid--CoA ligase YP_001990900.1 2048787 R 395960 CDS YP_001990901.1 192290296 6409563 complement(2050622..2051797) 1 NC_011004.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2051797 6409563 Rpal_1903 Rhodopseudomonas palustris TIE-1 acetyl-CoA acetyltransferase YP_001990901.1 2050622 R 395960 CDS YP_001990902.1 192290297 6409564 2051929..2052606 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: bja:bll7805 transcriptional regulatory protein; TetR family transcriptional regulator 2052606 6409564 Rpal_1904 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001990902.1 2051929 D 395960 CDS YP_001990903.1 192290298 6409565 2053063..2053821 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll7804 3-hydroxyacyl-CoA dehydrogenase type II; short-chain dehydrogenase/reductase SDR 2053821 6409565 Rpal_1905 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001990903.1 2053063 D 395960 CDS YP_001990904.1 192290299 6409566 2054045..2054851 1 NC_011004.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbt:BBta_7120 enoyl-CoA hydratase; Enoyl-CoA hydratase/isomerase 2054851 6409566 Rpal_1906 Rhodopseudomonas palustris TIE-1 Enoyl-CoA hydratase/isomerase YP_001990904.1 2054045 D 395960 CDS YP_001990905.1 192290300 6409567 2054902..2056776 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bra:BRADO0933 acyl-CoA synthetase; acyl-CoA synthetase 2056776 6409567 Rpal_1907 Rhodopseudomonas palustris TIE-1 acyl-CoA synthetase YP_001990905.1 2054902 D 395960 CDS YP_001990906.1 192290301 6409568 2056943..2058070 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:bll7801 dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2058070 6409568 Rpal_1908 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001990906.1 2056943 D 395960 CDS YP_001990907.1 192290302 6409569 2058207..2059454 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:bll7800 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2059454 6409569 Rpal_1909 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001990907.1 2058207 D 395960 CDS YP_001990908.1 192290303 6409570 2059605..2060849 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bra:BRADO0936 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2060849 6409570 Rpal_1910 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001990908.1 2059605 D 395960 CDS YP_001990909.1 192290304 6409571 2061016..2061714 1 NC_011004.1 PFAM: nitroreductase; KEGG: bbt:BBta_7115 hypothetical protein; nitroreductase 2061714 6409571 Rpal_1911 Rhodopseudomonas palustris TIE-1 nitroreductase YP_001990909.1 2061016 D 395960 CDS YP_001990910.1 192290305 6409572 complement(2061890..2062672) 1 NC_011004.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr7857 3-hydroxybutyryl-CoA dehydratase; Enoyl-CoA hydratase/isomerase 2062672 6409572 Rpal_1912 Rhodopseudomonas palustris TIE-1 Enoyl-CoA hydratase/isomerase YP_001990910.1 2061890 R 395960 CDS YP_001990911.1 192290306 6409573 2062973..2063647 1 NC_011004.1 PFAM: cyclic nucleotide-binding; KEGG: bbt:BBta_7109 hypothetical protein; cyclic nucleotide-binding protein 2063647 6409573 Rpal_1913 Rhodopseudomonas palustris TIE-1 cyclic nucleotide-binding protein YP_001990911.1 2062973 D 395960 CDS YP_001990912.1 192290307 6409574 2063659..2064543 1 NC_011004.1 KEGG: nha:Nham_0653 hypothetical protein; hypothetical protein 2064543 6409574 Rpal_1914 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990912.1 2063659 D 395960 CDS YP_001990913.1 192290308 6409575 2064794..2065198 1 NC_011004.1 KEGG: nha:Nham_0654 hypothetical protein; hypothetical protein 2065198 6409575 Rpal_1915 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990913.1 2064794 D 395960 CDS YP_001990914.1 192290309 6409576 2065472..2067682 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aeh:Mlg_2511 diguanylate cyclase with PAS/PAC sensor; diguanylate cyclase 2067682 6409576 Rpal_1916 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001990914.1 2065472 D 395960 CDS YP_001990915.1 192290310 6409577 complement(2067887..2068273) 1 NC_011004.1 KEGG: sil:SPO0412 hypothetical protein; hypothetical protein 2068273 6409577 Rpal_1917 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990915.1 2067887 R 395960 CDS YP_001990916.1 192290311 6409578 2068520..2068927 1 NC_011004.1 KEGG: nha:Nham_0655 hypothetical protein; hypothetical protein 2068927 6409578 Rpal_1918 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990916.1 2068520 D 395960 CDS YP_001990917.1 192290312 6409579 complement(2068934..2069266) 1 NC_011004.1 PFAM: protein of unknown function UPF0153; KEGG: bra:BRADO0949 hypothetical protein; hypothetical protein 2069266 6409579 Rpal_1919 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990917.1 2068934 R 395960 CDS YP_001990918.1 192290313 6409580 complement(2069330..2069950) 1 NC_011004.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bja:bll7835 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 2069950 6409580 Rpal_1920 Rhodopseudomonas palustris TIE-1 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001990918.1 2069330 R 395960 CDS YP_001990919.1 192290314 6409581 2070052..2070969 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:blr7836 transcriptional regulatory protein; LysR family transcriptional regulator 2070969 6409581 Rpal_1921 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001990919.1 2070052 D 395960 CDS YP_001990920.1 192290315 6409582 2070966..2071616 1 NC_011004.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: bbt:BBta_2936 alkylated DNA repair protein AlkB; 2OG-Fe(II) oxygenase 2071616 6409582 Rpal_1922 Rhodopseudomonas palustris TIE-1 2OG-Fe(II) oxygenase YP_001990920.1 2070966 D 395960 CDS YP_001990921.1 192290316 6409583 complement(2071623..2072954) 1 NC_011004.1 TIGRFAM: phenylacetate-CoA ligase; KEGG: bja:blr2897 phenylacetate-coenzyme A ligase; phenylacetate-CoA ligase 2072954 6409583 Rpal_1923 Rhodopseudomonas palustris TIE-1 phenylacetate-CoA ligase YP_001990921.1 2071623 R 395960 CDS YP_001990922.1 192290317 6409584 complement(2072969..2073442) 1 NC_011004.1 TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: bra:BRADO2525 phenylacetic acid degradation protein with thioesterase/thiol ester dehydrase-isomerase domain; phenylacetic acid degradation protein PaaD 2073442 6409584 Rpal_1924 Rhodopseudomonas palustris TIE-1 phenylacetic acid degradation protein PaaD YP_001990922.1 2072969 R 395960 CDS YP_001990923.1 192290318 6409585 2073667..2075706 1 NC_011004.1 catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 2075706 6409585 Rpal_1925 Rhodopseudomonas palustris TIE-1 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase YP_001990923.1 2073667 D 395960 CDS YP_001990924.1 192290319 6409586 2075763..2076779 1 NC_011004.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr2898 zinc binding dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein 2076779 6409586 Rpal_1926 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase zinc-binding domain-containing protein YP_001990924.1 2075763 D 395960 CDS YP_001990925.1 192290320 6409587 2077021..2077758 1 NC_011004.1 hypothetical protein 2077758 6409587 Rpal_1927 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990925.1 2077021 D 395960 CDS YP_001990926.1 192290321 6409588 complement(2078244..2079488) 1 NC_011004.1 PFAM: RES domain protein; KEGG: spc:Sputcn32_3793 hypothetical protein; RES domain-containing protein 2079488 6409588 Rpal_1928 Rhodopseudomonas palustris TIE-1 RES domain-containing protein YP_001990926.1 2078244 R 395960 CDS YP_001990927.1 192290322 6409589 complement(2080450..2081412) 1 NC_011004.1 PFAM: fatty acid desaturase; KEGG: ccr:CC_3422 hypothetical protein; fatty acid desaturase 2081412 6409589 Rpal_1929 Rhodopseudomonas palustris TIE-1 fatty acid desaturase YP_001990927.1 2080450 R 395960 CDS YP_001990928.1 192290323 6409590 complement(2081465..2082688) 1 NC_011004.1 PFAM: OsmC family protein; KEGG: bja:bll2902 hypothetical protein; OsmC family protein 2082688 6409590 Rpal_1930 Rhodopseudomonas palustris TIE-1 OsmC family protein YP_001990928.1 2081465 R 395960 CDS YP_001990929.1 192290324 6409591 complement(2082867..2083532) 1 NC_011004.1 PFAM: oxidoreductase molybdopterin binding; KEGG: bbt:BBta_2875 hypothetical protein; molybdopterin binding oxidoreductase 2083532 6409591 Rpal_1931 Rhodopseudomonas palustris TIE-1 molybdopterin binding oxidoreductase YP_001990929.1 2082867 R 395960 CDS YP_001990930.1 192290325 6409592 complement(2083555..2084754) 1 NC_011004.1 PFAM: cytochrome P450; KEGG: nha:Nham_2693 cytochrome P450; cytochrome P450 2084754 6409592 Rpal_1932 Rhodopseudomonas palustris TIE-1 cytochrome P450 YP_001990930.1 2083555 R 395960 CDS YP_001990931.1 192290326 6409593 complement(2084823..2085050) 1 NC_011004.1 KEGG: bja:bsl2906 probable ferredoxin; ferredoxin 2085050 6409593 Rpal_1933 Rhodopseudomonas palustris TIE-1 ferredoxin YP_001990931.1 2084823 R 395960 CDS YP_001990932.1 192290327 6409594 complement(2085151..2086584) 1 NC_011004.1 PFAM: Amidase; KEGG: bra:BRADO2532 amidotransferase; amidase 2086584 6409594 Rpal_1934 Rhodopseudomonas palustris TIE-1 amidase YP_001990932.1 2085151 R 395960 CDS YP_001990933.1 192290328 6409595 2086723..2087835 1 NC_011004.1 PFAM: SbmABacA family protein; ABC transporter; KEGG: bra:BRADO1574 ABC transporter-like; SbmABacA family protein 2087835 6409595 Rpal_1935 Rhodopseudomonas palustris TIE-1 SbmABacA family protein YP_001990933.1 2086723 D 395960 CDS YP_001990934.1 192290329 6409596 complement(2087851..2089227) 1 NC_011004.1 KEGG: bja:blr4657 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1; beta-galactosidase 2089227 6409596 Rpal_1936 Rhodopseudomonas palustris TIE-1 beta-galactosidase YP_001990934.1 2087851 R 395960 CDS YP_001990935.1 192290330 6409597 complement(2089413..2090192) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_2878 short chain dehydrogenase; short chain dehydrogenase 2090192 6409597 Rpal_1937 Rhodopseudomonas palustris TIE-1 short chain dehydrogenase YP_001990935.1 2089413 R 395960 CDS YP_001990936.1 192290331 6409598 complement(2090235..2091719) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr6445 ABC transporter ATP-binding protein; ABC transporter 2091719 6409598 Rpal_1938 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990936.1 2090235 R 395960 CDS YP_001990937.1 192290332 6409599 complement(2091719..2092642) 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bja:blr6444 ABC transporter permease protein; inner-membrane translocator 2092642 6409599 Rpal_1939 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001990937.1 2091719 R 395960 CDS YP_001990938.1 192290333 6409600 complement(2092644..2093519) 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bja:blr6443 ABC transporter permease protein; inner-membrane translocator 2093519 6409600 Rpal_1940 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001990938.1 2092644 R 395960 CDS YP_001990939.1 192290334 6409601 complement(2093716..2094966) 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: bja:blr6446 ABC transporter substrate-binding protein; extracellular ligand-binding receptor 2094966 6409601 Rpal_1941 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001990939.1 2093716 R 395960 CDS YP_001990940.1 192290335 6409602 2095173..2096252 1 NC_011004.1 KEGG: bja:blr2916 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 2096252 6409602 Rpal_1942 Rhodopseudomonas palustris TIE-1 tartrate dehydrogenase YP_001990940.1 2095173 D 395960 CDS YP_001990941.1 192290336 6409603 complement(2096286..2097125) 1 NC_011004.1 KEGG: bur:Bcep18194_A5663 DNA translocase FtsK; hypothetical protein 2097125 6409603 Rpal_1943 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990941.1 2096286 R 395960 CDS YP_001990942.1 192290337 6409604 complement(2097266..2098180) 1 NC_011004.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bbt:BBta_2880 phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 2098180 6409604 Rpal_1944 Rhodopseudomonas palustris TIE-1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001990942.1 2097266 R 395960 CDS YP_001990943.1 192290338 6409605 complement(2098215..2099465) 1 NC_011004.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 2099465 6409605 Rpal_1945 Rhodopseudomonas palustris TIE-1 allantoate amidohydrolase YP_001990943.1 2098215 R 395960 CDS YP_001990944.1 192290339 6409606 complement(2099535..2100485) 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll2920 transcriptional regulatory protein; LysR family transcriptional regulator 2100485 6409606 Rpal_1946 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001990944.1 2099535 R 395960 CDS YP_001990945.1 192290340 6409607 2100601..2101419 1 NC_011004.1 PFAM: protein of unknown function DUF1445; KEGG: bra:BRADO2538 hypothetical protein; hypothetical protein 2101419 6409607 Rpal_1947 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990945.1 2100601 D 395960 CDS YP_001990946.1 192290341 6409608 2101477..2102724 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO2539 branched-chain amino acid ABC transporter (substrate-binding protein); branched-chain amino acid ABC transporter substrate-binding protein 2102724 6409608 Rpal_1948 Rhodopseudomonas palustris TIE-1 branched-chain amino acid ABC transporter substrate-binding protein YP_001990946.1 2101477 D 395960 CDS YP_001990947.1 192290342 6409609 2102852..2103730 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bja:blr2923 amino acid ABC transporter permease protein; amino acid ABC transporter permease 2103730 6409609 Rpal_1949 Rhodopseudomonas palustris TIE-1 amino acid ABC transporter permease YP_001990947.1 2102852 D 395960 CDS YP_001990948.1 192290343 6409610 2103730..2104716 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bbt:BBta_2886 ABC transporter permiase component; inner-membrane translocator 2104716 6409610 Rpal_1950 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001990948.1 2103730 D 395960 CDS YP_001990949.1 192290344 6409611 2104713..2105447 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr2925 amino acid ABC transporter ATP-binding protein; ABC transporter 2105447 6409611 Rpal_1951 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990949.1 2104713 D 395960 CDS YP_001990950.1 192290345 6409612 2105431..2106135 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO2543 high-affinity branched-chain amino acid transport protein (ABC transporter ATP-binding protein); ABC transporter 2106135 6409612 Rpal_1952 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990950.1 2105431 D 395960 CDS YP_001990951.1 192290346 6409613 2106329..2107108 1 NC_011004.1 PFAM: xylose isomerase; KEGG: bja:blr2929 hypothetical protein; Hydroxypyruvate isomerase 2107108 6409613 Rpal_1953 Rhodopseudomonas palustris TIE-1 Hydroxypyruvate isomerase YP_001990951.1 2106329 D 395960 CDS YP_001990952.1 192290347 6409614 2107321..2110515 1 NC_011004.1 PFAM: acriflavin resistance protein; KEGG: bja:blr2934 probable cation efflux protein; acriflavin resistance protein 2110515 6409614 Rpal_1954 Rhodopseudomonas palustris TIE-1 acriflavin resistance protein YP_001990952.1 2107321 D 395960 CDS YP_001990953.1 192290348 6409615 2110505..2111707 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:blr2935 hypothetical protein; RND family efflux transporter MFP subunit 2111707 6409615 Rpal_1955 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001990953.1 2110505 D 395960 CDS YP_001990954.1 192290349 6409616 complement(2111875..2113389) 1 NC_011004.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2113389 6409616 Rpal_1956 Rhodopseudomonas palustris TIE-1 acetyl-CoA acetyltransferase YP_001990954.1 2111875 R 395960 CDS YP_001990955.1 192290350 6409617 complement(2113429..2114208) 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_2917 reductase; short-chain dehydrogenase/reductase SDR 2114208 6409617 Rpal_1957 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001990955.1 2113429 R 395960 CDS YP_001990956.1 192290351 6409618 2114376..2115176 1 NC_011004.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2115176 6409618 Rpal_1958 Rhodopseudomonas palustris TIE-1 enoyl-CoA hydratase YP_001990956.1 2114376 D 395960 CDS YP_001990957.1 192290352 6409619 2115184..2116179 1 NC_011004.1 PFAM: aminoglycoside phosphotransferase; KEGG: bbt:BBta_2919 hypothetical protein; aminoglycoside phosphotransferase 2116179 6409619 Rpal_1959 Rhodopseudomonas palustris TIE-1 aminoglycoside phosphotransferase YP_001990957.1 2115184 D 395960 CDS YP_001990958.1 192290353 6409620 2116198..2116578 1 NC_011004.1 KEGG: bra:BRADO2573 hypothetical protein; hypothetical protein 2116578 6409620 Rpal_1960 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990958.1 2116198 D 395960 CDS YP_001990959.1 192290354 6409621 complement(2116605..2116946) 1 NC_011004.1 KEGG: azo:azo2629 hypothetical protein; hypothetical protein 2116946 6409621 Rpal_1961 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990959.1 2116605 R 395960 CDS YP_001990960.1 192290355 6409622 complement(2117068..2117847) 1 NC_011004.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2117847 6409622 Rpal_1962 Rhodopseudomonas palustris TIE-1 enoyl-CoA hydratase YP_001990960.1 2117068 R 395960 CDS YP_001990961.1 192290356 6409623 2117974..2119248 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bra:BRADO2575 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2119248 6409623 Rpal_1963 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001990961.1 2117974 D 395960 CDS YP_001990962.1 192290357 6409624 complement(2119622..2121199) 1 NC_011004.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2121199 6409624 Rpal_1964 Rhodopseudomonas palustris TIE-1 long-chain-fatty-acid--CoA ligase YP_001990962.1 2119622 R 395960 CDS YP_001990963.1 192290358 6409625 complement(2121497..2122369) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO2577 oxidoreductase; short-chain dehydrogenase/reductase SDR 2122369 6409625 Rpal_1965 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001990963.1 2121497 R 395960 CDS YP_001990964.1 192290359 6409626 2122477..2123289 1 NC_011004.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2123289 6409626 Rpal_1966 Rhodopseudomonas palustris TIE-1 enoyl-CoA hydratase YP_001990964.1 2122477 D 395960 CDS YP_001990965.1 192290360 6409627 2123438..2124982 1 NC_011004.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2124982 6409627 Rpal_1967 Rhodopseudomonas palustris TIE-1 long-chain-fatty-acid--CoA ligase YP_001990965.1 2123438 D 395960 CDS YP_001990966.1 192290361 6409628 complement(2124979..2127780) 1 NC_011004.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: bja:bll4276 two-component hybrid sensor and regulator; signal transduction histidine kinase, nitrogen specific, NtrB 2127780 6409628 Rpal_1968 Rhodopseudomonas palustris TIE-1 signal transduction histidine kinase, nitrogen specific, NtrB YP_001990966.1 2124979 R 395960 CDS YP_001990967.1 192290362 6409629 complement(2127941..2128831) 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_2659 transcriptional regulator, LysR family; LysR family transcriptional regulator 2128831 6409629 Rpal_1969 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001990967.1 2127941 R 395960 CDS YP_001990968.1 192290363 6409630 complement(2128828..2129892) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bra:BRADO0268 hypothetical protein; hypothetical protein 2129892 6409630 Rpal_1970 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990968.1 2128828 R 395960 CDS YP_001990969.1 192290364 6409631 2130171..2130953 1 NC_011004.1 KEGG: nha:Nham_4237 hypothetical protein; hypothetical protein 2130953 6409631 Rpal_1971 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990969.1 2130171 D 395960 CDS YP_001990970.1 192290365 6409632 2131054..2133864 1 NC_011004.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 2133864 6409632 Rpal_1972 Rhodopseudomonas palustris TIE-1 phosphoenolpyruvate carboxylase YP_001990970.1 2131054 D 395960 CDS YP_001990971.1 192290366 6409633 2134002..2134331 1 NC_011004.1 PFAM: small multidrug resistance protein; KEGG: cbd:COXBU7E912_0802 quaternary ammonium compound-resistance protein QacE; small multidrug resistance protein 2134331 6409633 Rpal_1973 Rhodopseudomonas palustris TIE-1 small multidrug resistance protein YP_001990971.1 2134002 D 395960 CDS YP_001990972.1 192290367 6409634 2134713..2135375 1 NC_011004.1 KEGG: spb:M28_Spy0864 hypothetical protein; hypothetical protein 2135375 6409634 Rpal_1974 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990972.1 2134713 D 395960 CDS YP_001990973.1 192290368 6409635 2135399..2135809 1 NC_011004.1 hypothetical protein 2135809 6409635 Rpal_1975 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990973.1 2135399 D 395960 CDS YP_001990974.1 192290369 6409636 2136231..2137556 1 NC_011004.1 PFAM: OmpA/MotB domain protein; KEGG: bra:BRADO2722 conserved hypothetical protein; outer membrane protein and related peptidoglycan-associated (LipO)proteins; OmpA/MotB domain-containing protein 2137556 6409636 Rpal_1976 Rhodopseudomonas palustris TIE-1 OmpA/MotB domain-containing protein YP_001990974.1 2136231 D 395960 CDS YP_001990975.1 192290370 6409637 complement(2137714..2138628) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO2583 short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2138628 6409637 Rpal_1977 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001990975.1 2137714 R 395960 CDS YP_001990976.1 192290371 6409638 complement(2138916..2140055) 1 NC_011004.1 KEGG: bra:BRADO2584 hypothetical protein; hypothetical protein 2140055 6409638 Rpal_1978 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990976.1 2138916 R 395960 CDS YP_001990977.1 192290372 6409639 complement(2140061..2140474) 1 NC_011004.1 PFAM: protein of unknown function DUF35; KEGG: bja:bll2959 hypothetical protein; hypothetical protein 2140474 6409639 Rpal_1979 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990977.1 2140061 R 395960 CDS YP_001990978.1 192290373 6409640 2140770..2142119 1 NC_011004.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2142119 6409640 Rpal_1980 Rhodopseudomonas palustris TIE-1 amidase YP_001990978.1 2140770 D 395960 CDS YP_001990979.1 192290374 6409641 2142112..2142798 1 NC_011004.1 KEGG: bja:blr2961 hypothetical protein; hypothetical protein 2142798 6409641 Rpal_1981 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990979.1 2142112 D 395960 CDS YP_001990980.1 192290375 6409642 complement(2142973..2143422) 1 NC_011004.1 PFAM: thioesterase superfamily protein; KEGG: pla:Plav_2272 thioesterase superfamily protein; thioesterase superfamily protein 2143422 6409642 Rpal_1982 Rhodopseudomonas palustris TIE-1 thioesterase superfamily protein YP_001990980.1 2142973 R 395960 CDS YP_001990981.1 192290376 6409643 complement(2143761..2144933) 1 NC_011004.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 2144933 6409643 Rpal_1983 Rhodopseudomonas palustris TIE-1 4-hydroxybenzoate 3-monooxygenase YP_001990981.1 2143761 R 395960 CDS YP_001990982.1 192290377 6409644 2145102..2146112 1 NC_011004.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:blr7839 probable substrate-binding protein; TRAP dicarboxylate transporter subunit DctP 2146112 6409644 Rpal_1984 Rhodopseudomonas palustris TIE-1 TRAP dicarboxylate transporter subunit DctP YP_001990982.1 2145102 D 395960 CDS YP_001990983.1 192290378 6409645 2146259..2146831 1 NC_011004.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bra:BRADO0957 TrapT family, DctQ subunit, C4-dicarboxylate transport; tripartite AtP-independent periplasmic transporter subunit DctQ 2146831 6409645 Rpal_1985 Rhodopseudomonas palustris TIE-1 tripartite AtP-independent periplasmic transporter subunit DctQ YP_001990983.1 2146259 D 395960 CDS YP_001990984.1 192290379 6409646 2146838..2148145 1 NC_011004.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:blr7841 hypothetical protein; TRAP dicarboxylate transporter subunit DctM 2148145 6409646 Rpal_1986 Rhodopseudomonas palustris TIE-1 TRAP dicarboxylate transporter subunit DctM YP_001990984.1 2146838 D 395960 CDS YP_001990985.1 192290380 6409647 2148312..2148773 1 NC_011004.1 KEGG: bja:blr7842 hypothetical protein; hypothetical protein 2148773 6409647 Rpal_1987 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990985.1 2148312 D 395960 CDS YP_001990986.1 192290381 6409648 2149071..2149877 1 NC_011004.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2149877 6409648 Rpal_1988 Rhodopseudomonas palustris TIE-1 enoyl-CoA hydratase YP_001990986.1 2149071 D 395960 CDS YP_001990987.1 192290382 6409649 2149889..2151784 1 NC_011004.1 catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase 2151784 6409649 Rpal_1989 Rhodopseudomonas palustris TIE-1 feruloyl-CoA synthase YP_001990987.1 2149889 D 395960 CDS YP_001990988.1 192290383 6409650 2152023..2152442 1 NC_011004.1 PFAM: thioesterase superfamily protein; KEGG: bbt:BBta_7090 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 2152442 6409650 Rpal_1990 Rhodopseudomonas palustris TIE-1 thioesterase superfamily protein YP_001990988.1 2152023 D 395960 CDS YP_001990989.1 192290384 6409651 2152522..2153679 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: bbt:BBta_7089 branched-chain amino acid transport protein; extracellular ligand-binding receptor 2153679 6409651 Rpal_1991 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001990989.1 2152522 D 395960 CDS YP_001990990.1 192290385 6409652 2153995..2154849 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: reu:Reut_B3994 GGDEF; diguanylate cyclase 2154849 6409652 Rpal_1992 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001990990.1 2153995 D 395960 CDS YP_001990991.1 192290386 6409653 complement(2154787..2155506) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr7834 ABC transporter ATP-binding protein; ABC transporter 2155506 6409653 Rpal_1993 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990991.1 2154787 R 395960 CDS YP_001990992.1 192290387 6409654 complement(2155503..2157275) 1 NC_011004.1 PFAM: inner-membrane translocator; ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO0970 ABC tranpsorter, permease protein (N-ter) and ATP-binding protein (C-ter); branched-chain amino acid transport protein; ABC transporter 2157275 6409654 Rpal_1994 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001990992.1 2155503 R 395960 CDS YP_001990993.1 192290388 6409655 complement(2157281..2158321) 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bra:BRADO0971 ABC transporter permease protein; branched-chain amino acid transport protein; inner-membrane translocator 2158321 6409655 Rpal_1995 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001990993.1 2157281 R 395960 CDS YP_001990994.1 192290389 6409656 2158486..2159004 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: bbt:BBta_7084 transcriptional regulator, MarR family; MarR family transcriptional regulator 2159004 6409656 Rpal_1996 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001990994.1 2158486 D 395960 CDS YP_001990995.1 192290390 6409657 complement(2159141..2160871) 1 NC_011004.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: bja:blr2614 hypothetical protein; sodium/hydrogen exchanger 2160871 6409657 Rpal_1997 Rhodopseudomonas palustris TIE-1 sodium/hydrogen exchanger YP_001990995.1 2159141 R 395960 CDS YP_001990996.1 192290391 6409658 2160920..2161504 1 NC_011004.1 KEGG: bja:bll2613 hypothetical protein; hypothetical protein 2161504 6409658 Rpal_1998 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001990996.1 2160920 D 395960 CDS YP_001990997.1 192290392 6409659 2161624..2163198 1 NC_011004.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bja:bll7624 probable adenylate cyclase; adenylate/guanylate cyclase 2163198 6409659 Rpal_1999 Rhodopseudomonas palustris TIE-1 adenylate/guanylate cyclase YP_001990997.1 2161624 D 395960 CDS YP_001990998.1 192290393 6409660 complement(2163440..2164720) 1 NC_011004.1 PFAM: MOFRL domain protein; KEGG: nha:Nham_0659 hydroxypyruvate reductase; hydroxypyruvate reductase 2164720 6409660 Rpal_2000 Rhodopseudomonas palustris TIE-1 hydroxypyruvate reductase YP_001990998.1 2163440 R 395960 CDS YP_001990999.1 192290394 6409661 complement(2164920..2166155) 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: bja:blr7827 ABC transporter substrate-binding protein; extracellular ligand-binding receptor 2166155 6409661 Rpal_2001 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001990999.1 2164920 R 395960 CDS YP_001991000.1 192290395 6409662 complement(2166398..2167885) 1 NC_011004.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: bbt:BBta_2983 uracil-DNA glycosylase; phage SPO1 DNA polymerase-like protein 2167885 6409662 Rpal_2002 Rhodopseudomonas palustris TIE-1 phage SPO1 DNA polymerase-like protein YP_001991000.1 2166398 R 395960 CDS YP_001991001.1 192290396 6409663 complement(2167982..2169232) 1 NC_011004.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: nwi:Nwi_2258 elongator protein 3/MiaB/NifB; radical SAM domain-containing protein 2169232 6409663 Rpal_2003 Rhodopseudomonas palustris TIE-1 radical SAM domain-containing protein YP_001991001.1 2167982 R 395960 CDS YP_001991002.1 192290397 6409664 2169399..2170184 1 NC_011004.1 KEGG: bbt:BBta_2985 hypothetical protein; hypothetical protein 2170184 6409664 Rpal_2004 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991002.1 2169399 D 395960 CDS YP_001991003.1 192290398 6409665 2170237..2171673 1 NC_011004.1 KEGG: nha:Nham_2667 hypothetical protein; hypothetical protein 2171673 6409665 Rpal_2005 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991003.1 2170237 D 395960 CDS YP_001991004.1 192290399 6409666 2171825..2175412 1 NC_011004.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 2175412 dnaE2 6409666 dnaE2 Rhodopseudomonas palustris TIE-1 error-prone DNA polymerase YP_001991004.1 2171825 D 395960 CDS YP_001991005.1 192290400 6409667 complement(2175418..2176371) 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sen:SACE_4472 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2176371 6409667 Rpal_2007 Rhodopseudomonas palustris TIE-1 NAD-dependent epimerase/dehydratase YP_001991005.1 2175418 R 395960 CDS YP_001991006.1 192290401 6409668 2176448..2177398 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: scl:sce0177 transcriptional regulator, LysR family; LysR family transcriptional regulator 2177398 6409668 Rpal_2008 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001991006.1 2176448 D 395960 CDS YP_001991007.1 192290402 6409669 2177447..2178844 1 NC_011004.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr3030 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 2178844 6409669 Rpal_2009 Rhodopseudomonas palustris TIE-1 L-carnitine dehydratase/bile acid-inducible protein F YP_001991007.1 2177447 D 395960 CDS YP_001991008.1 192290403 6409670 2179064..2180302 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_2988 exported protein of unknown function; RND family efflux transporter MFP subunit 2180302 6409670 Rpal_2010 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001991008.1 2179064 D 395960 CDS YP_001991009.1 192290404 6409671 2180459..2183581 1 NC_011004.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: bbt:BBta_2989 cation/heavy metal efflux system protein; CzcA family heavy metal efflux pump 2183581 6409671 Rpal_2011 Rhodopseudomonas palustris TIE-1 CzcA family heavy metal efflux pump YP_001991009.1 2180459 D 395960 CDS YP_001991010.1 192290405 6409672 2183781..2184098 1 NC_011004.1 KEGG: bbt:BBta_5457 hypothetical protein; hypothetical protein 2184098 6409672 Rpal_2012 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991010.1 2183781 D 395960 CDS YP_001991011.1 192290406 6409673 complement(2184195..2185613) 1 NC_011004.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: bbt:BBta_3004 outer TolC membrane protein; TolC family type I secretion outer membrane protein 2185613 6409673 Rpal_2013 Rhodopseudomonas palustris TIE-1 TolC family type I secretion outer membrane protein YP_001991011.1 2184195 R 395960 CDS YP_001991012.1 192290407 6409674 complement(2185812..2186591) 1 NC_011004.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:bll3036 enoyl CoA hydratase; Enoyl-CoA hydratase/isomerase 2186591 6409674 Rpal_2014 Rhodopseudomonas palustris TIE-1 Enoyl-CoA hydratase/isomerase YP_001991012.1 2185812 R 395960 CDS YP_001991013.1 192290408 6409675 complement(2186675..2187412) 1 NC_011004.1 KEGG: bja:bll3037 hypothetical protein; hypothetical protein 2187412 6409675 Rpal_2015 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991013.1 2186675 R 395960 CDS YP_001991014.1 192290409 6409676 2187667..2188212 1 NC_011004.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2188212 6409676 Rpal_2016 Rhodopseudomonas palustris TIE-1 RNA polymerase sigma factor YP_001991014.1 2187667 D 395960 CDS YP_001991015.1 192290410 6409677 2188215..2188853 1 NC_011004.1 PFAM: protein of unknown function DUF1109; KEGG: bbt:BBta_3008 membrane protein of unknown function; hypothetical protein 2188853 6409677 Rpal_2017 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991015.1 2188215 D 395960 CDS YP_001991016.1 192290411 6409678 2188970..2189314 1 NC_011004.1 KEGG: xau:Xaut_0421 hypothetical protein; hypothetical protein 2189314 6409678 Rpal_2018 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991016.1 2188970 D 395960 CDS YP_001991017.1 192290412 6409679 2189375..2191603 1 NC_011004.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_2201 TonB-dependent receptor; TonB-dependent receptor 2191603 6409679 Rpal_2019 Rhodopseudomonas palustris TIE-1 TonB-dependent receptor YP_001991017.1 2189375 D 395960 CDS YP_001991018.1 192290413 6409680 complement(2191626..2192735) 1 NC_011004.1 KEGG: nha:Nham_2660 hypothetical protein; hypothetical protein 2192735 6409680 Rpal_2020 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991018.1 2191626 R 395960 CDS YP_001991019.1 192290414 6409681 complement(2192773..2193918) 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bbt:BBta_3010 membrane protein of unknown function with diguanylate cyclase domain (GGDEF domain); diguanylate cyclase 2193918 6409681 Rpal_2021 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001991019.1 2192773 R 395960 CDS YP_001991020.1 192290415 6409682 2194307..2194876 1 NC_011004.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2194876 6409682 Rpal_2022 Rhodopseudomonas palustris TIE-1 RNA polymerase sigma factor YP_001991020.1 2194307 D 395960 CDS YP_001991021.1 192290416 6409683 2194873..2195706 1 NC_011004.1 KEGG: bbt:BBta_3012 hypothetical protein; hypothetical protein 2195706 6409683 Rpal_2023 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991021.1 2194873 D 395960 CDS YP_001991022.1 192290417 6409684 2196192..2196710 1 NC_011004.1 KEGG: nwi:Nwi_2244 hypothetical protein; hypothetical protein 2196710 6409684 Rpal_2024 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991022.1 2196192 D 395960 CDS YP_001991023.1 192290418 6409685 2197148..2199214 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:blr2506 chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2199214 6409685 Rpal_2025 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001991023.1 2197148 D 395960 CDS YP_001991024.1 192290419 6409686 2199525..2199866 1 NC_011004.1 hypothetical protein 2199866 6409686 Rpal_2026 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991024.1 2199525 D 395960 CDS YP_001991025.1 192290420 6409687 2200020..2202329 1 NC_011004.1 PFAM: TonB-dependent receptor; KEGG: azc:AZC_1341 TonB dependent receptor; TonB-dependent receptor 2202329 6409687 Rpal_2027 Rhodopseudomonas palustris TIE-1 TonB-dependent receptor YP_001991025.1 2200020 D 395960 CDS YP_001991026.1 192290421 6409688 2202497..2202940 1 NC_011004.1 KEGG: ngo:NGO1701 hypothetical protein; hypothetical protein 2202940 6409688 Rpal_2028 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991026.1 2202497 D 395960 CDS YP_001991027.1 192290422 6409689 complement(2203032..2203271) 1 NC_011004.1 PFAM: type IV pilus assembly PilZ; KEGG: nha:Nham_1523 hypothetical protein; type IV pilus assembly PilZ 2203271 6409689 Rpal_2029 Rhodopseudomonas palustris TIE-1 type IV pilus assembly PilZ YP_001991027.1 2203032 R 395960 CDS YP_001991028.1 192290423 6409690 complement(2203404..2204762) 1 NC_011004.1 KEGG: bja:bll3046 hypothetical protein; hypothetical protein 2204762 6409690 Rpal_2030 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991028.1 2203404 R 395960 CDS YP_001991029.1 192290424 6409691 complement(2204868..2205128) 1 NC_011004.1 KEGG: bbt:BBta_5165 hypothetical protein; hypothetical protein 2205128 6409691 Rpal_2031 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991029.1 2204868 R 395960 CDS YP_001991030.1 192290425 6409692 complement(2205195..2205845) 1 NC_011004.1 PFAM: peptidase C15 pyroglutamyl peptidase I; KEGG: nwi:Nwi_2241 peptidase C15, pyroglutamyl peptidase I; peptidase C15 pyroglutamyl peptidase I 2205845 6409692 Rpal_2032 Rhodopseudomonas palustris TIE-1 peptidase C15 pyroglutamyl peptidase I YP_001991030.1 2205195 R 395960 CDS YP_001991031.1 192290426 6409693 complement(2205842..2206831) 1 NC_011004.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 2206831 6409693 Rpal_2033 Rhodopseudomonas palustris TIE-1 arginine/ornithine transport system ATPase YP_001991031.1 2205842 R 395960 CDS YP_001991032.1 192290427 6409694 complement(2206918..2207247) 1 NC_011004.1 KEGG: nha:Nham_0910 carbonic anhydrase; carbonic anhydrase 2207247 6409694 Rpal_2034 Rhodopseudomonas palustris TIE-1 carbonic anhydrase YP_001991032.1 2206918 R 395960 CDS YP_001991033.1 192290428 6409695 complement(2207238..2207510) 1 NC_011004.1 KEGG: nha:Nham_0910 carbonic anhydrase; carbonic anhydrase 2207510 6409695 Rpal_2035 Rhodopseudomonas palustris TIE-1 carbonic anhydrase YP_001991033.1 2207238 R 395960 CDS YP_001991034.1 192290429 6409696 complement(2207709..2208494) 1 NC_011004.1 KEGG: bja:bll3052 hypothetical protein; hypothetical protein 2208494 6409696 Rpal_2036 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991034.1 2207709 R 395960 CDS YP_001991035.1 192290430 6409697 complement(2208555..2208965) 1 NC_011004.1 PFAM: PilT protein domain protein; KEGG: rca:Rcas_4442 PilT protein domain protein; PilT protein domain-containing protein 2208965 6409697 Rpal_2037 Rhodopseudomonas palustris TIE-1 PilT protein domain-containing protein YP_001991035.1 2208555 R 395960 CDS YP_001991036.1 192290431 6409698 complement(2208962..2209219) 1 NC_011004.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: mpt:Mpe_A3784 hypothetical protein; prevent-host-death family protein 2209219 6409698 Rpal_2038 Rhodopseudomonas palustris TIE-1 prevent-host-death family protein YP_001991036.1 2208962 R 395960 CDS YP_001991037.1 192290432 6409699 complement(2209283..2211442) 1 NC_011004.1 MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 2211442 6409699 Rpal_2039 Rhodopseudomonas palustris TIE-1 methylmalonyl-CoA mutase YP_001991037.1 2209283 R 395960 CDS YP_001991038.1 192290433 6409700 complement(2211505..2211969) 1 NC_011004.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bja:bll3055 hypothetical protein; glutathione-dependent formaldehyde-activating protein 2211969 6409700 Rpal_2040 Rhodopseudomonas palustris TIE-1 glutathione-dependent formaldehyde-activating protein YP_001991038.1 2211505 R 395960 CDS YP_001991039.1 192290434 6409701 complement(2211966..2213837) 1 NC_011004.1 PFAM: methylmalonyl-CoA mutase; KEGG: bja:bll3056 probable methylmalonyl-CoA mutase small subunit; methylmalonyl-CoA mutase 2213837 6409701 Rpal_2041 Rhodopseudomonas palustris TIE-1 methylmalonyl-CoA mutase YP_001991039.1 2211966 R 395960 CDS YP_001991040.1 192290435 6409702 complement(2213995..2214486) 1 NC_011004.1 KEGG: nha:Nham_2635 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2214486 6409702 Rpal_2042 Rhodopseudomonas palustris TIE-1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001991040.1 2213995 R 395960 CDS YP_001991041.1 192290436 6409703 complement(2214488..2214853) 1 NC_011004.1 TIGRFAM: dihydroneopterin aldolase; KEGG: bra:BRADO2684 dihydroneopterin aldolase (DhnA); dihydroneopterin aldolase 2214853 6409703 Rpal_2043 Rhodopseudomonas palustris TIE-1 dihydroneopterin aldolase YP_001991041.1 2214488 R 395960 CDS YP_001991042.1 192290437 6409704 complement(2214850..2215707) 1 NC_011004.1 KEGG: nha:Nham_2633 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 2215707 6409704 Rpal_2044 Rhodopseudomonas palustris TIE-1 dihydropteroate synthase YP_001991042.1 2214850 R 395960 CDS YP_001991043.1 192290438 6409705 complement(2215773..2216180) 1 NC_011004.1 KEGG: nwi:Nwi_2232 hypothetical protein; hypothetical protein 2216180 6409705 Rpal_2045 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991043.1 2215773 R 395960 CDS YP_001991044.1 192290439 6409706 complement(2216198..2216566) 1 NC_011004.1 KEGG: bja:bll3061 hypothetical protein; hypothetical protein 2216566 6409706 Rpal_2046 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991044.1 2216198 R 395960 CDS YP_001991045.1 192290440 6409707 2216903..2218513 1 NC_011004.1 PFAM: protein of unknown function DUF853 NPT hydrolase KEGG: bra:BRADO2688 conserved hypothetical protein; ATPase; hypothetical protein 2218513 6409707 Rpal_2047 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991045.1 2216903 D 395960 CDS YP_001991046.1 192290441 6409708 2218811..2220217 1 NC_011004.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: nha:Nham_2629 hypothetical protein; hypothetical protein 2220217 6409708 Rpal_2048 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991046.1 2218811 D 395960 CDS YP_001991047.1 192290442 6409709 2220561..2222855 1 NC_011004.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dac:Daci_1878 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2222855 6409709 Rpal_2049 Rhodopseudomonas palustris TIE-1 TonB-dependent siderophore receptor YP_001991047.1 2220561 D 395960 CDS YP_001991048.1 192290443 6409710 2222969..2223703 1 NC_011004.1 KEGG: dac:Daci_3884 hypothetical protein; hypothetical protein 2223703 6409710 Rpal_2050 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991048.1 2222969 D 395960 CDS YP_001991049.1 192290444 6409711 2223700..2223981 1 NC_011004.1 KEGG: dac:Daci_0273 hypothetical protein; hypothetical protein 2223981 6409711 Rpal_2051 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991049.1 2223700 D 395960 CDS YP_001991050.1 192290445 6409712 2223995..2225617 1 NC_011004.1 KEGG: dac:Daci_0272 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein 2225617 6409712 Rpal_2052 Rhodopseudomonas palustris TIE-1 PepSY-associated TM helix domain-containing protein YP_001991050.1 2223995 D 395960 CDS YP_001991051.1 192290446 6409713 2225614..2225901 1 NC_011004.1 KEGG: xcb:XC_0260 hypothetical protein; hypothetical protein 2225901 6409713 Rpal_2053 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991051.1 2225614 D 395960 CDS YP_001991052.1 192290447 6409714 complement(2225941..2227938) 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_5044 methyl-accepting chemotaxis receptor/sensory transducer; methyl-accepting chemotaxis sensory transducer 2227938 6409714 Rpal_2054 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001991052.1 2225941 R 395960 CDS YP_001991053.1 192290448 6409715 complement(2228395..2229177) 1 NC_011004.1 PFAM: class II aldolase/adducin family protein; KEGG: bra:BRADO2701 hypothetical protein; aldolase II superfamily protein 2229177 6409715 Rpal_2055 Rhodopseudomonas palustris TIE-1 aldolase II superfamily protein YP_001991053.1 2228395 R 395960 CDS YP_001991054.1 192290449 6409716 2229443..2230321 1 NC_011004.1 KEGG: bja:blr3067 hypothetical protein; hypothetical protein 2230321 6409716 Rpal_2056 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991054.1 2229443 D 395960 CDS YP_001991055.1 192290450 6409717 2230509..2230925 1 NC_011004.1 PFAM: ROSMUCR transcriptional regulator; KEGG: nha:Nham_2627 transcriptional regulator, MucR family; MucR family transcriptional regulator 2230925 6409717 Rpal_2057 Rhodopseudomonas palustris TIE-1 MucR family transcriptional regulator YP_001991055.1 2230509 D 395960 CDS YP_001991056.1 192290451 6409718 complement(2230933..2231673) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_3419 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2231673 6409718 Rpal_2058 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001991056.1 2230933 R 395960 CDS YP_001991057.1 192290452 6409719 2231751..2232386 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: rle:RL0480 TetR family transcriptional regulator; TetR family transcriptional regulator 2232386 6409719 Rpal_2059 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001991057.1 2231751 D 395960 CDS YP_001991058.1 192290453 6409720 2232508..2233119 1 NC_011004.1 KEGG: nwi:Nwi_2226 ATPase involved in DNA replication initiation; DNA replication initiation ATPase 2233119 6409720 Rpal_2060 Rhodopseudomonas palustris TIE-1 DNA replication initiation ATPase YP_001991058.1 2232508 D 395960 CDS YP_001991059.1 192290454 6409721 complement(2233149..2233577) 1 NC_011004.1 PFAM: Fe-S metabolism associated SufE; KEGG: bbt:BBta_3043 SufE-like protein; Fe-S metabolism associated SufE 2233577 6409721 Rpal_2061 Rhodopseudomonas palustris TIE-1 Fe-S metabolism associated SufE YP_001991059.1 2233149 R 395960 CDS YP_001991060.1 192290455 6409722 complement(2233693..2234115) 1 NC_011004.1 KEGG: bra:BRADO2707 hypothetical protein; hypothetical protein 2234115 6409722 Rpal_2062 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991060.1 2233693 R 395960 CDS YP_001991061.1 192290456 6409723 2234522..2236354 1 NC_011004.1 KEGG: nha:Nham_2623 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 2236354 6409723 Rpal_2063 Rhodopseudomonas palustris TIE-1 multi-sensor signal transduction histidine kinase YP_001991061.1 2234522 D 395960 CDS YP_001991062.1 192290457 6409724 2236431..2237132 1 NC_011004.1 PFAM: peptidoglycan-binding domain 1 protein; KEGG: bja:blr3072 hypothetical protein; peptidoglycan-binding domain 1 protein 2237132 6409724 Rpal_2064 Rhodopseudomonas palustris TIE-1 peptidoglycan-binding domain 1 protein YP_001991062.1 2236431 D 395960 CDS YP_001991063.1 192290458 6409725 2237285..2237626 1 NC_011004.1 PFAM: protein of unknown function DUF1491; KEGG: bja:blr3074 hypothetical protein; hypothetical protein 2237626 6409725 Rpal_2065 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991063.1 2237285 D 395960 CDS YP_001991064.1 192290459 6409726 complement(2237801..2238775) 1 NC_011004.1 KEGG: nha:Nham_1399 hypothetical protein; hypothetical protein 2238775 6409726 Rpal_2066 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991064.1 2237801 R 395960 CDS YP_001991065.1 192290460 6409727 complement(2238927..2239997) 1 NC_011004.1 PFAM: polysaccharide deacetylase; KEGG: nha:Nham_1255 polysaccharide deacetylase; polysaccharide deacetylase 2239997 6409727 Rpal_2067 Rhodopseudomonas palustris TIE-1 polysaccharide deacetylase YP_001991065.1 2238927 R 395960 CDS YP_001991066.1 192290461 6409728 complement(2240077..2240607) 1 NC_011004.1 KEGG: bja:blr5578 hypothetical protein; hypothetical protein 2240607 6409728 Rpal_2068 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991066.1 2240077 R 395960 CDS YP_001991067.1 192290462 6409729 2240787..2240987 1 NC_011004.1 KEGG: bbt:BBta_3049 hypothetical protein; hypothetical protein 2240987 6409729 Rpal_2069 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991067.1 2240787 D 395960 CDS YP_001991068.1 192290463 6409730 2241005..2241787 1 NC_011004.1 KEGG: bbt:BBta_3050 exported protein of unknown function; hypothetical protein 2241787 6409730 Rpal_2070 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991068.1 2241005 D 395960 CDS YP_001991069.1 192290464 6409731 complement(2241794..2242360) 1 NC_011004.1 KEGG: bra:BRADO2716 conserved hypothetical protein; signal peptide; hypothetical protein 2242360 6409731 Rpal_2071 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991069.1 2241794 R 395960 CDS YP_001991070.1 192290465 6409732 complement(2242357..2242935) 1 NC_011004.1 PFAM: protein of unknown function DUF1214; KEGG: bra:BRADO2717 conserved hypothetical protein; signal peptide; hypothetical protein 2242935 6409732 Rpal_2072 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991070.1 2242357 R 395960 CDS YP_001991071.1 192290466 6409733 complement(2242979..2245255) 1 NC_011004.1 KEGG: bra:BRADO2718 penicillin-binding protein (MrcA-like); TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 2245255 6409733 Rpal_2073 Rhodopseudomonas palustris TIE-1 penicillin-binding protein YP_001991071.1 2242979 R 395960 CDS YP_001991072.1 192290467 6409734 2245525..2246037 1 NC_011004.1 PFAM: protein of unknown function UPF0153; KEGG: bja:blr3103 hypothetical protein; hypothetical protein 2246037 6409734 Rpal_2074 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991072.1 2245525 D 395960 CDS YP_001991073.1 192290468 6409735 2246091..2246834 1 NC_011004.1 PFAM: protein of unknown function DUF81; KEGG: bcm:Bcenmc03_5380 protein of unknown function DUF81; hypothetical protein 2246834 6409735 Rpal_2075 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991073.1 2246091 D 395960 CDS YP_001991074.1 192290469 6409736 complement(2247130..2247645) 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: bja:bll1047 transcriptional regulatory protein; MarR family transcriptional regulator 2247645 6409736 Rpal_2076 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001991074.1 2247130 R 395960 CDS YP_001991075.1 192290470 6409737 2247725..2248963 1 NC_011004.1 PFAM: cytochrome P450; KEGG: bbt:BBta_0729 cytochrome P450; cytochrome P450 2248963 6409737 Rpal_2077 Rhodopseudomonas palustris TIE-1 cytochrome P450 YP_001991075.1 2247725 D 395960 CDS YP_001991076.1 192290471 6409738 2248973..2249293 1 NC_011004.1 PFAM: ferredoxin; KEGG: bja:blr1049 ferrodoxin; ferredoxin 2249293 6409738 Rpal_2078 Rhodopseudomonas palustris TIE-1 ferredoxin YP_001991076.1 2248973 D 395960 CDS YP_001991077.1 192290472 6409739 2249369..2250583 1 NC_011004.1 KEGG: bja:blr1050 branched chain amino acid transport system substrate binding protein; branched chain amino acid ABC transporter substrate-binding protein 2250583 6409739 Rpal_2079 Rhodopseudomonas palustris TIE-1 branched chain amino acid ABC transporter substrate-binding protein YP_001991077.1 2249369 D 395960 CDS YP_001991078.1 192290473 6409740 complement(2250873..2251079) 1 NC_011004.1 KEGG: bpt:Bpet2624 hypothetical protein; hypothetical protein 2251079 6409740 Rpal_2080 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991078.1 2250873 R 395960 CDS YP_001991079.1 192290474 6409741 complement(2251076..2252221) 1 NC_011004.1 PFAM: PepSY-associated TM helix domain protein; KEGG: bbt:BBta_2666 uncharacterized iron-regulated membrane protein; PepSY-associated TM helix domain-containing protein 2252221 6409741 Rpal_2081 Rhodopseudomonas palustris TIE-1 PepSY-associated TM helix domain-containing protein YP_001991079.1 2251076 R 395960 CDS YP_001991080.1 192290475 6409742 complement(2252218..2254533) 1 NC_011004.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rru:Rru_A2395 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2254533 6409742 Rpal_2082 Rhodopseudomonas palustris TIE-1 TonB-dependent siderophore receptor YP_001991080.1 2252218 R 395960 CDS YP_001991081.1 192290476 6409744 complement(2256285..2257460) 1 NC_011004.1 PFAM: beta-lactamase; KEGG: bra:BRADO4091 beta-lactamase family protein; 6-aminohexanoate-dimer hydrolase; 6-aminohexanoate-dimer hydrolase 2257460 6409744 Rpal_2084 Rhodopseudomonas palustris TIE-1 6-aminohexanoate-dimer hydrolase YP_001991081.1 2256285 R 395960 CDS YP_001991082.1 192290477 6409745 complement(2257576..2258643) 1 NC_011004.1 PFAM: Choloylglycine hydrolase; KEGG: oan:Oant_1699 choloylglycine hydrolase; Choloylglycine hydrolase 2258643 6409745 Rpal_2085 Rhodopseudomonas palustris TIE-1 Choloylglycine hydrolase YP_001991082.1 2257576 R 395960 CDS YP_001991083.1 192290478 6409746 2258799..2260442 1 NC_011004.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bbt:BBta_3058 permease of the major facilitator superfamily; major facilitator superfamily protein 2260442 6409746 Rpal_2086 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001991083.1 2258799 D 395960 CDS YP_001991084.1 192290479 6409747 2260566..2261966 1 NC_011004.1 KEGG: nha:Nham_0909 hypothetical protein; hypothetical protein 2261966 6409747 Rpal_2087 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991084.1 2260566 D 395960 CDS YP_001991085.1 192290480 6409748 2262078..2262242 1 NC_011004.1 PFAM: Flp/Fap pilin component; KEGG: bja:bsl1442 pilus assembly protein pilin subunit; Flp/Fap pilin component 2262242 6409748 Rpal_2088 Rhodopseudomonas palustris TIE-1 Flp/Fap pilin component YP_001991085.1 2262078 D 395960 CDS YP_001991086.1 192290481 6409749 2262535..2264088 1 NC_011004.1 KEGG: ppg:PputGB1_1968 major facilitator superfamily MFS_1; hypothetical protein 2264088 6409749 Rpal_2089 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991086.1 2262535 D 395960 CDS YP_001991087.1 192290482 6409750 2264366..2264512 1 NC_011004.1 KEGG: bbt:BBta_3066 hypothetical protein; hypothetical protein 2264512 6409750 Rpal_2090 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991087.1 2264366 D 395960 CDS YP_001991088.1 192290483 6409751 2264750..2266429 1 NC_011004.1 KEGG: bbt:BBta_6268 methyl-accepting chemotaxis receptor/sensory transducer with PAS domain; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 2266429 6409751 Rpal_2091 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_001991088.1 2264750 D 395960 CDS YP_001991089.1 192290484 6409752 2266569..2267744 1 NC_011004.1 TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: nha:Nham_1410 phage portal protein, HK97; phage portal protein, HK97 family 2267744 6409752 Rpal_2092 Rhodopseudomonas palustris TIE-1 phage portal protein, HK97 family YP_001991089.1 2266569 D 395960 CDS YP_001991090.1 192290485 6409753 2267770..2267970 1 NC_011004.1 KEGG: nwi:Nwi_1162 hypothetical protein; hypothetical protein 2267970 6409753 Rpal_2093 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991090.1 2267770 D 395960 CDS YP_001991091.1 192290486 6409754 2267975..2268151 1 NC_011004.1 KEGG: nha:Nham_1412 hypothetical protein; hypothetical protein 2268151 6409754 Rpal_2094 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991091.1 2267975 D 395960 CDS YP_001991092.1 192290487 6409755 2268276..2269022 1 NC_011004.1 TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: nha:Nham_1413 peptidase U35, phage prohead HK97; phage prohead protease, HK97 family 2269022 6409755 Rpal_2095 Rhodopseudomonas palustris TIE-1 phage prohead protease, HK97 family YP_001991092.1 2268276 D 395960 CDS YP_001991093.1 192290488 6409756 2269153..2270409 1 NC_011004.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: nha:Nham_1415 phage major capsid protein, HK97; phage major capsid protein, HK97 family 2270409 6409756 Rpal_2096 Rhodopseudomonas palustris TIE-1 phage major capsid protein, HK97 family YP_001991093.1 2269153 D 395960 CDS YP_001991094.1 192290489 6409757 2270689..2271582 1 NC_011004.1 KEGG: nwi:Nwi_1168 hypothetical protein; hypothetical protein 2271582 6409757 Rpal_2097 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991094.1 2270689 D 395960 CDS YP_001991095.1 192290490 6409758 2271579..2271950 1 NC_011004.1 KEGG: mes:Meso_2040 hypothetical protein; hypothetical protein 2271950 6409758 Rpal_2098 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991095.1 2271579 D 395960 CDS YP_001991096.1 192290491 6409759 complement(2272138..2273175) 1 NC_011004.1 PFAM: Appr-1-p processing domain protein; KEGG: tbd:Tbd_1489 Appr-1-p processing protein; Appr-1-p processing protein 2273175 6409759 Rpal_2099 Rhodopseudomonas palustris TIE-1 Appr-1-p processing protein YP_001991096.1 2272138 R 395960 CDS YP_001991097.1 192290492 6409760 complement(2273187..2273858) 1 NC_011004.1 KEGG: tbd:Tbd_1490 hypothetical protein; hypothetical protein 2273858 6409760 Rpal_2100 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991097.1 2273187 R 395960 CDS YP_001991098.1 192290493 6409761 2274202..2275128 1 NC_011004.1 KEGG: nha:Nham_1407 hypothetical protein; hypothetical protein 2275128 6409761 Rpal_2101 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991098.1 2274202 D 395960 CDS YP_001991099.1 192290494 6409762 2275205..2276365 1 NC_011004.1 PFAM: protein of unknown function DUF264; KEGG: azc:AZC_1105 hypothetical protein; hypothetical protein 2276365 6409762 Rpal_2102 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991099.1 2275205 D 395960 CDS YP_001991100.1 192290495 6409763 2276463..2276747 1 NC_011004.1 KEGG: bra:BRADO3033 conserved hypothetical protein; signal peptide; hypothetical protein 2276747 6409763 Rpal_2103 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991100.1 2276463 D 395960 CDS YP_001991101.1 192290496 6409764 complement(2276767..2277075) 1 NC_011004.1 KEGG: nha:Nham_2225 hypothetical protein; hypothetical protein 2277075 6409764 Rpal_2104 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991101.1 2276767 R 395960 CDS YP_001991102.1 192290497 6409765 complement(2277158..2277925) 1 NC_011004.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: bbt:BBta_0650 serine protease; peptidase S1 and S6 chymotrypsin/Hap 2277925 6409765 Rpal_2105 Rhodopseudomonas palustris TIE-1 peptidase S1 and S6 chymotrypsin/Hap YP_001991102.1 2277158 R 395960 CDS YP_001991103.1 192290498 6409766 2277990..2278550 1 NC_011004.1 KEGG: nha:Nham_1417 phage conserved hypothetical protein, phiE125 gp8; phage protein, phiE125 gp8 2278550 6409766 Rpal_2106 Rhodopseudomonas palustris TIE-1 phage protein, phiE125 gp8 YP_001991103.1 2277990 D 395960 CDS YP_001991104.1 192290499 6409767 2278547..2278867 1 NC_011004.1 TIGRFAM: phage head-tail adaptor; KEGG: xau:Xaut_3159 phage head-tail adaptor; phage head-tail adaptor 2278867 6409767 Rpal_2107 Rhodopseudomonas palustris TIE-1 phage head-tail adaptor YP_001991104.1 2278547 D 395960 CDS YP_001991105.1 192290500 6409768 2278864..2279274 1 NC_011004.1 KEGG: nha:Nham_1418 gene transfer agent (GTA) like protein; gene transfer agent (GTA) like protein 2279274 6409768 Rpal_2108 Rhodopseudomonas palustris TIE-1 gene transfer agent (GTA) like protein YP_001991105.1 2278864 D 395960 CDS YP_001991106.1 192290501 6409769 2279287..2279694 1 NC_011004.1 TIGRFAM: phage major tail protein, TP901-1 family; KEGG: nha:Nham_1419 phage major tail protein, TP901-1; phage major tail protein, TP901-1 family 2279694 6409769 Rpal_2109 Rhodopseudomonas palustris TIE-1 phage major tail protein, TP901-1 family YP_001991106.1 2279287 D 395960 CDS YP_001991107.1 192290502 6409770 2279704..2280021 1 NC_011004.1 KEGG: nha:Nham_1420 gene transfer agent (GTA) like protein; gene transfer agent (GTA) like protein 2280021 6409770 Rpal_2110 Rhodopseudomonas palustris TIE-1 gene transfer agent (GTA) like protein YP_001991107.1 2279704 D 395960 CDS YP_001991108.1 192290503 6409771 2280018..2280221 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1176 phage conserved hypothetical protein; hypothetical protein 2280221 6409771 Rpal_2111 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991108.1 2280018 D 395960 CDS YP_001991109.1 192290504 6409772 2280218..2280811 1 NC_011004.1 KEGG: nha:Nham_1422 gene transfer agent (GTA) like protein; gene transfer agent (GTA) like protein 2280811 6409772 Rpal_2112 Rhodopseudomonas palustris TIE-1 gene transfer agent (GTA) like protein YP_001991109.1 2280218 D 395960 CDS YP_001991110.1 192290505 6409773 2280950..2281588 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: nha:Nham_1423 hypothetical protein; hypothetical protein 2281588 6409773 Rpal_2113 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991110.1 2280950 D 395960 CDS YP_001991111.1 192290506 6409774 2281834..2283228 1 NC_011004.1 hypothetical protein 2283228 6409774 Rpal_2114 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991111.1 2281834 D 395960 CDS YP_001991112.1 192290507 6409775 2283582..2284493 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1179 hypothetical protein; hypothetical protein 2284493 6409775 Rpal_2115 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991112.1 2283582 D 395960 CDS YP_001991113.1 192290508 6409776 2284533..2284985 1 NC_011004.1 TIGRFAM: phage cell wall peptidase, NlpC/P60 family; KEGG: nwi:Nwi_1180 phage cell wall peptidase, NlpC/P60; Nlp family transcriptional regulator 2284985 6409776 Rpal_2116 Rhodopseudomonas palustris TIE-1 Nlp family transcriptional regulator YP_001991113.1 2284533 D 395960 CDS YP_001991114.1 192290509 6409777 2285050..2285475 1 NC_011004.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: mrd:Mrad2831_2003 glutathione-dependent formaldehyde-activating GFA; glutathione-dependent formaldehyde-activating protein 2285475 6409777 Rpal_2117 Rhodopseudomonas palustris TIE-1 glutathione-dependent formaldehyde-activating protein YP_001991114.1 2285050 D 395960 CDS YP_001991115.1 192290510 6409778 complement(2285514..2285981) 1 NC_011004.1 hypothetical protein 2285981 6409778 Rpal_2118 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991115.1 2285514 R 395960 CDS YP_001991116.1 192290511 6409779 2286135..2286608 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: mex:Mext_1446 regulatory protein MarR; MarR family transcriptional regulator 2286608 6409779 Rpal_2119 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001991116.1 2286135 D 395960 CDS YP_001991117.1 192290512 6409780 2286610..2287062 1 NC_011004.1 KEGG: mlo:mlr5153 hypothetical protein; hypothetical protein 2287062 6409780 Rpal_2120 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991117.1 2286610 D 395960 CDS YP_001991118.1 192290513 6409781 2287089..2287634 1 NC_011004.1 PFAM: cytochrome B561; KEGG: rle:RL3155 cytochrome b561; cytochrome B561 2287634 6409781 Rpal_2121 Rhodopseudomonas palustris TIE-1 cytochrome B561 YP_001991118.1 2287089 D 395960 CDS YP_001991119.1 192290514 6409782 2287789..2291661 1 NC_011004.1 KEGG: nha:Nham_1426 gene transfer agent (GTA) orfg15, like protein; hypothetical protein 2291661 6409782 Rpal_2122 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991119.1 2287789 D 395960 CDS YP_001991120.1 192290515 6409783 2291671..2293038 1 NC_011004.1 KEGG: mrd:Mrad2831_4981 hypothetical protein; hypothetical protein 2293038 6409783 Rpal_2123 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991120.1 2291671 D 395960 CDS YP_001991121.1 192290516 6409784 2293254..2294015 1 NC_011004.1 KEGG: nha:Nham_1429 glycohydrolase; chitinase-like protein 2294015 6409784 Rpal_2124 Rhodopseudomonas palustris TIE-1 chitinase-like protein YP_001991121.1 2293254 D 395960 CDS YP_001991122.1 192290517 6409785 2294018..2294590 1 NC_011004.1 KEGG: azc:AZC_2138 hypothetical protein; hypothetical protein 2294590 6409785 Rpal_2125 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991122.1 2294018 D 395960 CDS YP_001991123.1 192290518 6409786 2294702..2295376 1 NC_011004.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_1433 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 2295376 6409786 Rpal_2126 Rhodopseudomonas palustris TIE-1 winged helix family two component transcriptional regulator YP_001991123.1 2294702 D 395960 CDS YP_001991124.1 192290519 6409787 2295392..2296783 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: nha:Nham_1434 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2296783 6409787 Rpal_2127 Rhodopseudomonas palustris TIE-1 integral membrane sensor signal transduction histidine kinase YP_001991124.1 2295392 D 395960 CDS YP_001991125.1 192290520 6409788 2296880..2297344 1 NC_011004.1 KEGG: nha:Nham_1435 LipA a lipoprotein; LipA a lipoprotein 2297344 6409788 Rpal_2128 Rhodopseudomonas palustris TIE-1 LipA a lipoprotein YP_001991125.1 2296880 D 395960 CDS YP_001991126.1 192290521 6409789 2297567..2298970 1 NC_011004.1 KEGG: nha:Nham_1436 hypothetical protein; hypothetical protein 2298970 6409789 Rpal_2129 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991126.1 2297567 D 395960 CDS YP_001991127.1 192290522 6409790 2299133..2300239 1 NC_011004.1 TIGRFAM: cytochrome C-type biogenesis protein CcmI; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: bbt:BBta_3071 cytochrome C-type biogenesis protein CycH; cytochrome C-type biogenesis protein CcmI 2300239 6409790 Rpal_2130 Rhodopseudomonas palustris TIE-1 cytochrome C-type biogenesis protein CcmI YP_001991127.1 2299133 D 395960 CDS YP_001991128.1 192290523 6409791 2300353..2300856 1 NC_011004.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome C maturation system; periplasmic protein anchored to the inner membrane; cytochrome C-type biogenesis protein CcmE 2300856 6409791 Rpal_2131 Rhodopseudomonas palustris TIE-1 cytochrome C-type biogenesis protein CcmE YP_001991128.1 2300353 D 395960 CDS YP_001991129.1 192290524 6409792 2300853..2302835 1 NC_011004.1 TIGRFAM: cytochrome C-type biogenesis protein CcmF; PFAM: cytochrome C assembly protein; KEGG: nha:Nham_1439 cytochrome C-type biogenesis protein CcmF; cytochrome C-type biogenesis protein CcmF 2302835 6409792 Rpal_2132 Rhodopseudomonas palustris TIE-1 cytochrome C-type biogenesis protein CcmF YP_001991129.1 2300853 D 395960 CDS YP_001991130.1 192290525 6409793 2302849..2303346 1 NC_011004.1 PFAM: cytochrome C biogenesis protein; KEGG: bja:blr3128 cytochrome C-type biogenesis protein; cytochrome C biogenesis protein 2303346 6409793 Rpal_2133 Rhodopseudomonas palustris TIE-1 cytochrome C biogenesis protein YP_001991130.1 2302849 D 395960 CDS YP_001991131.1 192290526 6409794 complement(2303657..2304679) 1 NC_011004.1 formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate; formamidase 2304679 amiF 6409794 amiF Rhodopseudomonas palustris TIE-1 formamidase YP_001991131.1 2303657 R 395960 CDS YP_001991132.1 192290527 6409796 complement(2305533..2306999) 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A1114 major facilitator superfamily MFS_1; major facilitator superfamily protein 2306999 6409796 Rpal_2136 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001991132.1 2305533 R 395960 CDS YP_001991133.1 192290528 6409797 2307074..2307925 1 NC_011004.1 SMART: helix-turn-helix domain protein; KEGG: rru:Rru_A1115 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein 2307925 6409797 Rpal_2137 Rhodopseudomonas palustris TIE-1 helix-turn-helix domain-containing protein YP_001991133.1 2307074 D 395960 CDS YP_001991134.1 192290529 6409798 complement(2308089..2308577) 1 NC_011004.1 KEGG: pna:Pnap_2337 hypothetical protein; hypothetical protein 2308577 6409798 Rpal_2138 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991134.1 2308089 R 395960 CDS YP_001991135.1 192290530 6409799 complement(2308631..2309539) 1 NC_011004.1 PFAM: ferredoxin; KEGG: rsh:Rsph17029_0397 ferredoxin; ferredoxin 2309539 6409799 Rpal_2139 Rhodopseudomonas palustris TIE-1 ferredoxin YP_001991135.1 2308631 R 395960 CDS YP_001991136.1 192290531 6409800 2309908..2311479 1 NC_011004.1 KEGG: bra:BRADO2741 serine protease do-like precursor; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 2311479 6409800 Rpal_2140 Rhodopseudomonas palustris TIE-1 protease Do YP_001991136.1 2309908 D 395960 CDS YP_001991137.1 192290532 6409801 2311711..2312436 1 NC_011004.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bbt:BBta_3078 two-component transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis; winged helix family two component transcriptional regulator 2312436 6409801 Rpal_2141 Rhodopseudomonas palustris TIE-1 winged helix family two component transcriptional regulator YP_001991137.1 2311711 D 395960 CDS YP_001991138.1 192290533 6409802 2312671..2313957 1 NC_011004.1 PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; KEGG: bbt:BBta_0969 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2313957 6409802 Rpal_2142 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001991138.1 2312671 D 395960 CDS YP_001991139.1 192290534 6409803 2314169..2315617 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bbt:BBta_3085 two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2315617 6409803 Rpal_2143 Rhodopseudomonas palustris TIE-1 integral membrane sensor signal transduction histidine kinase YP_001991139.1 2314169 D 395960 CDS YP_001991140.1 192290535 6409804 2315614..2318586 1 NC_011004.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 2318586 6409804 Rpal_2144 Rhodopseudomonas palustris TIE-1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_001991140.1 2315614 D 395960 CDS YP_001991141.1 192290536 6409805 complement(2318645..2318896) 1 NC_011004.1 KEGG: bja:bll6166 hypothetical protein; hypothetical protein 2318896 6409805 Rpal_2145 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991141.1 2318645 R 395960 CDS YP_001991142.1 192290537 6409806 complement(2318997..2320019) 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mex:Mext_2407 helix-turn-helix-domain containing protein AraC type; AraC family transcriptional regulator 2320019 6409806 Rpal_2146 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001991142.1 2318997 R 395960 CDS YP_001991143.1 192290538 6409807 2320493..2323897 1 NC_011004.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Autotransporter beta- domain protein; KEGG: azc:AZC_3227 outer membrane autotransporter barrel precursor; outer membrane autotransporter barrel domain-containing protein 2323897 6409807 Rpal_2147 Rhodopseudomonas palustris TIE-1 outer membrane autotransporter barrel domain-containing protein YP_001991143.1 2320493 D 395960 CDS YP_001991144.1 192290539 6409808 complement(2324204..2326513) 1 NC_011004.1 KEGG: bbt:BBta_3094 two-component sensor histidine kinase with a ATP-binding domain (C-term); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 2326513 6409808 Rpal_2148 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor signal transduction histidine kinase YP_001991144.1 2324204 R 395960 CDS YP_001991145.1 192290540 6409809 complement(2326729..2328111) 1 NC_011004.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: nha:Nham_1450 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 2328111 6409809 Rpal_2149 Rhodopseudomonas palustris TIE-1 cation diffusion facilitator family transporter YP_001991145.1 2326729 R 395960 CDS YP_001991146.1 192290541 6409810 complement(2328242..2329210) 1 NC_011004.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bra:BRADO4966 NADPH quinone oxidoreductase; alcohol dehydrogenase zinc-binding domain-containing protein 2329210 6409810 Rpal_2150 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase zinc-binding domain-containing protein YP_001991146.1 2328242 R 395960 CDS YP_001991147.1 192290542 6409811 complement(2329253..2330251) 1 NC_011004.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: bja:bll3143 hypothetical protein; 2-nitropropane dioxygenase 2330251 6409811 Rpal_2151 Rhodopseudomonas palustris TIE-1 2-nitropropane dioxygenase YP_001991147.1 2329253 R 395960 CDS YP_001991148.1 192290543 6409812 complement(2330489..2331274) 1 NC_011004.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:bll3146 hypothetical protein; fumarylacetoacetate (FAA) hydrolase 2331274 6409812 Rpal_2152 Rhodopseudomonas palustris TIE-1 fumarylacetoacetate (FAA) hydrolase YP_001991148.1 2330489 R 395960 CDS YP_001991149.1 192290544 6409813 complement(2331430..2332410) 1 NC_011004.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 2332410 6409813 Rpal_2153 Rhodopseudomonas palustris TIE-1 2-dehydropantoate 2-reductase YP_001991149.1 2331430 R 395960 CDS YP_001991150.1 192290545 6409814 complement(2332511..2333803) 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_3099 oxalate/formate antiporter; major facilitator superfamily protein 2333803 6409814 Rpal_2154 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001991150.1 2332511 R 395960 CDS YP_001991151.1 192290546 6409815 complement(2333972..2335249) 1 NC_011004.1 catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; formyl-coenzyme A transferase 2335249 6409815 Rpal_2155 Rhodopseudomonas palustris TIE-1 formyl-coenzyme A transferase YP_001991151.1 2333972 R 395960 CDS YP_001991152.1 192290547 6409816 complement(2335366..2336097) 1 NC_011004.1 PFAM: regulatory protein GntR HTH; GntR domain protein; hypothetical protein; KEGG: bja:bll3158 transcriptional regulatory protein; GntR family transcriptional regulator 2336097 6409816 Rpal_2156 Rhodopseudomonas palustris TIE-1 GntR family transcriptional regulator YP_001991152.1 2335366 R 395960 CDS YP_001991153.1 192290548 6409817 complement(2336407..2336619) 1 NC_011004.1 hypothetical protein 2336619 6409817 Rpal_2157 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991153.1 2336407 R 395960 CDS YP_001991154.1 192290549 6409818 2336649..2337575 1 NC_011004.1 possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 2337575 6409818 Rpal_2158 Rhodopseudomonas palustris TIE-1 pyrroloquinoline quinone biosynthesis protein PqqB YP_001991154.1 2336649 D 395960 CDS YP_001991155.1 192290550 6409819 2337572..2338336 1 NC_011004.1 Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 2338336 6409819 Rpal_2159 Rhodopseudomonas palustris TIE-1 pyrroloquinoline quinone biosynthesis protein PqqC YP_001991155.1 2337572 D 395960 CDS YP_001991156.1 192290551 6409820 2338341..2338649 1 NC_011004.1 PFAM: coenzyme PQQ synthesis D; KEGG: bra:BRADO5796 coenzyme PQQ synthesis protein D (pyrroloquinoline quinone biosynthesis protein D)(PqqD); coenzyme PQQ synthesis D 2338649 6409820 Rpal_2160 Rhodopseudomonas palustris TIE-1 coenzyme PQQ synthesis D YP_001991156.1 2338341 D 395960 CDS YP_001991157.1 192290552 6409821 2338646..2339824 1 NC_011004.1 KEGG: bbt:BBta_6304 pyrroloquinoline quinone biosynthesis protein PqqE; TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; pyrroloquinoline quinone biosynthesis protein PqqE 2339824 6409821 Rpal_2161 Rhodopseudomonas palustris TIE-1 pyrroloquinoline quinone biosynthesis protein PqqE YP_001991157.1 2338646 D 395960 CDS YP_001991158.1 192290553 6409822 complement(2340006..2340881) 1 NC_011004.1 PFAM: secretion protein HlyD family protein; KEGG: bja:blr3854 hypothetical protein; secretion protein HlyD family protein 2340881 6409822 Rpal_2162 Rhodopseudomonas palustris TIE-1 secretion protein HlyD family protein YP_001991158.1 2340006 R 395960 CDS YP_001991159.1 192290554 6409823 complement(2340893..2341105) 1 NC_011004.1 PFAM: protein of unknown function DUF1656; KEGG: rme:Rmet_4792 protein of unknown function DUF1656; hypothetical protein 2341105 6409823 Rpal_2163 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991159.1 2340893 R 395960 CDS YP_001991160.1 192290555 6409824 complement(2341102..2343114) 1 NC_011004.1 PFAM: fusaric acid resistance protein conserved region; KEGG: bra:BRADO4669 efflux transporter permease; fusaric acid resistance pump; fusaric acid resistance protein 2343114 6409824 Rpal_2164 Rhodopseudomonas palustris TIE-1 fusaric acid resistance protein YP_001991160.1 2341102 R 395960 CDS YP_001991161.1 192290556 6409825 2343280..2343966 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: eci:UTI89_C4911 UidR transriptional regulator; TetR family transcriptional regulator 2343966 6409825 Rpal_2165 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001991161.1 2343280 D 395960 CDS YP_001991162.1 192290557 6409826 complement(2344103..2345212) 1 NC_011004.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_5970 alcohol dehydrogenase class III; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2345212 6409826 Rpal_2166 Rhodopseudomonas palustris TIE-1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase YP_001991162.1 2344103 R 395960 CDS YP_001991163.1 192290558 6409827 complement(2345311..2346834) 1 NC_011004.1 SMART: ATPase AAA; KEGG: bbt:BBta_6263 hypothetical protein; ATPase AAA 2346834 6409827 Rpal_2167 Rhodopseudomonas palustris TIE-1 ATPase AAA YP_001991163.1 2345311 R 395960 CDS YP_001991164.1 192290559 6409828 complement(2346961..2347977) 1 NC_011004.1 PFAM: monooxygenase; KEGG: bmf:BAB1_2052 bacterial luciferase; monooxygenase 2347977 6409828 Rpal_2168 Rhodopseudomonas palustris TIE-1 monooxygenase YP_001991164.1 2346961 R 395960 CDS YP_001991165.1 192290560 6409829 complement(2348089..2348712) 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: xau:Xaut_4925 transcriptional regulator, TetR family; TetR family transcriptional regulator 2348712 6409829 Rpal_2169 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001991165.1 2348089 R 395960 CDS YP_001991166.1 192290561 6409830 2348792..2349880 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO1729 component of multidrug efflux system (RND family); RND family efflux transporter MFP subunit 2349880 6409830 Rpal_2170 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001991166.1 2348792 D 395960 CDS YP_001991167.1 192290562 6409831 2349877..2350950 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_2040 component of multidrug efflux system (RND family); RND family efflux transporter MFP subunit 2350950 6409831 Rpal_2171 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001991167.1 2349877 D 395960 CDS YP_001991168.1 192290563 6409832 2350947..2353997 1 NC_011004.1 PFAM: acriflavin resistance protein; KEGG: bbt:BBta_2039 component of multidrug efflux system (RND family); acriflavin resistance protein 2353997 6409832 Rpal_2172 Rhodopseudomonas palustris TIE-1 acriflavin resistance protein YP_001991168.1 2350947 D 395960 CDS YP_001991169.1 192290564 6409833 2353999..2354280 1 NC_011004.1 hypothetical protein 2354280 6409833 Rpal_2173 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991169.1 2353999 D 395960 CDS YP_001991170.1 192290565 6409834 2354312..2355502 1 NC_011004.1 PFAM: Patatin; KEGG: bja:blr4684 hypothetical protein; patatin 2355502 6409834 Rpal_2174 Rhodopseudomonas palustris TIE-1 patatin YP_001991170.1 2354312 D 395960 CDS YP_001991171.1 192290566 6409835 2355561..2356118 1 NC_011004.1 KEGG: bra:BRADO1664 hypothetical protein; hypothetical protein 2356118 6409835 Rpal_2175 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991171.1 2355561 D 395960 CDS YP_001991172.1 192290567 6409836 complement(2356144..2358132) 1 NC_011004.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; KEGG: ret:RHE_CH02959 probable adenylate cyclase protein; adenylate/guanylate cyclase with integral membrane sensor 2358132 6409836 Rpal_2176 Rhodopseudomonas palustris TIE-1 adenylate/guanylate cyclase with integral membrane sensor YP_001991172.1 2356144 R 395960 CDS YP_001991173.1 192290568 6409837 complement(2358399..2359031) 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: psp:PSPPH_3268 transcriptional regulator, TetR family; TetR family transcriptional regulator 2359031 6409837 Rpal_2177 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001991173.1 2358399 R 395960 CDS YP_001991174.1 192290569 6409838 2359195..2360310 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO1901 component of multidrug efflux system; signal peptide; RND family efflux transporter MFP subunit 2360310 6409838 Rpal_2178 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001991174.1 2359195 D 395960 CDS YP_001991175.1 192290570 6409839 2360310..2363465 1 NC_011004.1 PFAM: acriflavin resistance protein; KEGG: nha:Nham_1082 acriflavin resistance protein; acriflavin resistance protein 2363465 6409839 Rpal_2179 Rhodopseudomonas palustris TIE-1 acriflavin resistance protein YP_001991175.1 2360310 D 395960 CDS YP_001991176.1 192290571 6409840 2363576..2364568 1 NC_011004.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: bra:BRADO4745 tRNA-dihydrouridine synthase A; tRNA-dihydrouridine synthase A 2364568 6409840 Rpal_2180 Rhodopseudomonas palustris TIE-1 tRNA-dihydrouridine synthase A YP_001991176.1 2363576 D 395960 CDS YP_001991177.1 192290572 6409841 complement(2364598..2364921) 1 NC_011004.1 KEGG: swi:Swit_0156 transcriptional regulator-like protein; XRE family transcriptional regulator 2364921 6409841 Rpal_2181 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001991177.1 2364598 R 395960 CDS YP_001991178.1 192290573 6409842 complement(2364918..2365292) 1 NC_011004.1 PFAM: protein of unknown function DUF1044; KEGG: swi:Swit_0155 protein of unknown function DUF1044; hypothetical protein 2365292 6409842 Rpal_2182 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991178.1 2364918 R 395960 CDS YP_001991179.1 192290574 6409843 complement(2365480..2366016) 1 NC_011004.1 KEGG: bbt:BBta_3458 exported protein of unknown function; hypothetical protein 2366016 6409843 Rpal_2183 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991179.1 2365480 R 395960 CDS YP_001991180.1 192290575 6409844 complement(2366039..2366263) 1 NC_011004.1 PFAM: protein of unknown function DUF1289; KEGG: bja:bsl3737 hypothetical protein; hypothetical protein 2366263 6409844 Rpal_2184 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991180.1 2366039 R 395960 CDS YP_001991181.1 192290576 6409845 complement(2366308..2367903) 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nha:Nham_1469 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2367903 6409845 Rpal_2185 Rhodopseudomonas palustris TIE-1 integral membrane sensor signal transduction histidine kinase YP_001991181.1 2366308 R 395960 CDS YP_001991182.1 192290577 6409846 complement(2368072..2368941) 1 NC_011004.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bra:BRADO4737 oxidoreductase; 3-hydroxyisobutyrate dehydrogenase; 6-phosphogluconate dehydrogenase 2368941 6409846 Rpal_2186 Rhodopseudomonas palustris TIE-1 6-phosphogluconate dehydrogenase YP_001991182.1 2368072 R 395960 CDS YP_001991183.1 192290578 6409847 2369250..2370362 1 NC_011004.1 KEGG: bja:blr3742 probable multidrug-resistance related protein; multidrug-resistance-like protein 2370362 6409847 Rpal_2187 Rhodopseudomonas palustris TIE-1 multidrug-resistance-like protein YP_001991183.1 2369250 D 395960 CDS YP_001991184.1 192290579 6409848 2370613..2371704 1 NC_011004.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bbt:BBta_3466 periplasmic mannitol-binding protein; TRAP dicarboxylate transporter subunit DctP 2371704 6409848 Rpal_2188 Rhodopseudomonas palustris TIE-1 TRAP dicarboxylate transporter subunit DctP YP_001991184.1 2370613 D 395960 CDS YP_001991185.1 192290580 6409849 complement(2371893..2373734) 1 NC_011004.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: xau:Xaut_4764 TRAP dicarboxylate transporter DctM subunit; TRAP dicarboxylate transporter subunit DctM 2373734 6409849 Rpal_2189 Rhodopseudomonas palustris TIE-1 TRAP dicarboxylate transporter subunit DctM YP_001991185.1 2371893 R 395960 CDS YP_001991186.1 192290581 6409850 complement(2373772..2374368) 1 NC_011004.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: azc:AZC_2523 glutamate transport protein; tripartite AtP-independent periplasmic transporter subunit DctQ 2374368 6409850 Rpal_2190 Rhodopseudomonas palustris TIE-1 tripartite AtP-independent periplasmic transporter subunit DctQ YP_001991186.1 2373772 R 395960 CDS YP_001991187.1 192290582 6409851 complement(2374542..2375576) 1 NC_011004.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 2375576 moaA 6409851 moaA Rhodopseudomonas palustris TIE-1 molybdenum cofactor biosynthesis protein A YP_001991187.1 2374542 R 395960 CDS YP_001991188.1 192290583 6409852 complement(2375683..2376132) 1 NC_011004.1 KEGG: nha:Nham_1478 hypothetical protein; hypothetical protein 2376132 6409852 Rpal_2192 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991188.1 2375683 R 395960 CDS YP_001991189.1 192290584 6409853 complement(2376296..2376973) 1 NC_011004.1 TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bbt:BBta_3482 phosphoglycolate phosphatase; phosphoglycolate phosphatase 2376973 6409853 Rpal_2193 Rhodopseudomonas palustris TIE-1 phosphoglycolate phosphatase YP_001991189.1 2376296 R 395960 CDS YP_001991190.1 192290585 6409854 2377124..2377822 1 NC_011004.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 2377822 6409854 Rpal_2194 Rhodopseudomonas palustris TIE-1 ribose-5-phosphate isomerase A YP_001991190.1 2377124 D 395960 CDS YP_001991191.1 192290586 6409855 2377849..2378358 1 NC_011004.1 KEGG: nwi:Nwi_1222 hypothetical protein; hypothetical protein 2378358 6409855 Rpal_2195 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991191.1 2377849 D 395960 CDS YP_001991192.1 192290587 6409856 2378376..2379761 1 NC_011004.1 TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: nha:Nham_1482 glutathione reductase; glutathione-disulfide reductase 2379761 6409856 Rpal_2196 Rhodopseudomonas palustris TIE-1 glutathione-disulfide reductase YP_001991192.1 2378376 D 395960 CDS YP_001991193.1 192290588 6409857 2379950..2381338 1 NC_011004.1 KEGG: bja:blr3778 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; phospho-2-dehydro-3-deoxyheptonate aldolase 2381338 6409857 Rpal_2197 Rhodopseudomonas palustris TIE-1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001991193.1 2379950 D 395960 CDS YP_001991194.1 192290589 6409858 2381469..2381822 1 NC_011004.1 PFAM: diacylglycerol kinase; KEGG: nha:Nham_1484 diacylglycerol kinase; diacylglycerol kinase 2381822 6409858 Rpal_2198 Rhodopseudomonas palustris TIE-1 diacylglycerol kinase YP_001991194.1 2381469 D 395960 CDS YP_001991195.1 192290590 6409859 2381869..2383632 1 NC_011004.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2383632 6409859 Rpal_2199 Rhodopseudomonas palustris TIE-1 NAD synthetase YP_001991195.1 2381869 D 395960 CDS YP_001991196.1 192290591 6409860 complement(2383880..2384209) 1 NC_011004.1 hypothetical protein 2384209 6409860 Rpal_2200 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991196.1 2383880 R 395960 CDS YP_001991197.1 192290592 6409861 complement(2384437..2385444) 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bja:blr7666 transcriptional regulatory protein; AraC family transcriptional regulator 2385444 6409861 Rpal_2201 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001991197.1 2384437 R 395960 CDS YP_001991198.1 192290593 6409862 2386502..2388292 1 NC_011004.1 PFAM: sulfatase; KEGG: reh:H16_B0315 arylsulfatase; sulfatase 2388292 6409862 Rpal_2202 Rhodopseudomonas palustris TIE-1 sulfatase YP_001991198.1 2386502 D 395960 CDS YP_001991199.1 192290594 6409863 2388328..2389377 1 NC_011004.1 KEGG: bja:blr2668 hypothetical protein; hypothetical protein 2389377 6409863 Rpal_2203 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991199.1 2388328 D 395960 CDS YP_001991200.1 192290595 6409864 complement(2389632..2390042) 1 NC_011004.1 PFAM: PilT protein domain protein; KEGG: cch:Cag_1433 possible NtrR protein; PilT protein domain-containing protein 2390042 6409864 Rpal_2204 Rhodopseudomonas palustris TIE-1 PilT protein domain-containing protein YP_001991200.1 2389632 R 395960 CDS YP_001991201.1 192290596 6409865 2390483..2390908 1 NC_011004.1 PFAM: cupin; KEGG: azc:AZC_1498 hypothetical protein; cupin 2390908 6409865 Rpal_2205 Rhodopseudomonas palustris TIE-1 cupin YP_001991201.1 2390483 D 395960 CDS YP_001991202.1 192290597 6409866 complement(2391005..2392174) 1 NC_011004.1 KEGG: bja:bll3788 hypothetical protein; hypothetical protein 2392174 6409866 Rpal_2206 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991202.1 2391005 R 395960 CDS YP_001991203.1 192290598 6409867 complement(2392360..2392668) 1 NC_011004.1 KEGG: bja:bll3789 hypothetical protein; hypothetical protein 2392668 6409867 Rpal_2207 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991203.1 2392360 R 395960 CDS YP_001991204.1 192290599 6409868 2393070..2394545 1 NC_011004.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2394545 cysS 6409868 cysS Rhodopseudomonas palustris TIE-1 cysteinyl-tRNA synthetase YP_001991204.1 2393070 D 395960 CDS YP_001991205.1 192290600 6409869 2394829..2394960 1 NC_011004.1 KEGG: bbt:BBta_3499 hypothetical protein; hypothetical protein 2394960 6409869 Rpal_2209 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991205.1 2394829 D 395960 CDS YP_001991206.1 192290601 6409870 2394960..2395460 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_3500 acetyltransferase; N-acetyltransferase GCN5 2395460 6409870 Rpal_2210 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001991206.1 2394960 D 395960 CDS YP_001991207.1 192290602 6409871 2395457..2397055 1 NC_011004.1 KEGG: nwi:Nwi_1231 alpha-isopropylmalate/homocitrate synthase family transferase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; alpha-isopropylmalate/homocitrate synthase family transferase 2397055 6409871 Rpal_2211 Rhodopseudomonas palustris TIE-1 alpha-isopropylmalate/homocitrate synthase family transferase YP_001991207.1 2395457 D 395960 CDS YP_001991208.1 192290603 6409872 2397237..2398793 1 NC_011004.1 thiamine-pyrophosphate requiring enzyme; hypothetical protein 2398793 6409872 Rpal_2212 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991208.1 2397237 D 395960 CDS YP_001991209.1 192290604 6409873 2398805..2400214 1 NC_011004.1 PFAM: FAD linked oxidase domain protein; KEGG: pla:Plav_2705 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 2400214 6409873 Rpal_2213 Rhodopseudomonas palustris TIE-1 FAD linked oxidase domain-containing protein YP_001991209.1 2398805 D 395960 CDS YP_001991210.1 192290605 6409874 complement(2400239..2402308) 1 NC_011004.1 PFAM: cytochrome C class I; KEGG: xau:Xaut_1071 gluconate 2-dehydrogenase (acceptor); gluconate 2-dehydrogenase (acceptor) 2402308 6409874 Rpal_2214 Rhodopseudomonas palustris TIE-1 gluconate 2-dehydrogenase (acceptor) YP_001991210.1 2400239 R 395960 CDS YP_001991211.1 192290606 6409875 complement(2402491..2403126) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1232 conserved hypothetical protein 730; hypothetical protein 2403126 6409875 Rpal_2215 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991211.1 2402491 R 395960 CDS YP_001991212.1 192290607 6409876 2403285..2405240 1 NC_011004.1 PFAM: ABC transporter transmembrane region; ABC transporter; SMART: ATPase AAA; KEGG: bja:blr3795 ABC transporter HlyB/MsbA family; ABC transporter 2405240 6409876 Rpal_2216 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991212.1 2403285 D 395960 CDS YP_001991213.1 192290608 6409877 2405289..2405987 1 NC_011004.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 2405987 6409877 Rpal_2217 Rhodopseudomonas palustris TIE-1 phosphatidylserine decarboxylase YP_001991213.1 2405289 D 395960 CDS YP_001991214.1 192290609 6409878 2406062..2406934 1 NC_011004.1 KEGG: bja:blr3797 phosphatidylserine synthase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; outer membrane TOM13 domain protein; CDP-diacylglycerol/serine O-phosphatidyltransferase 2406934 6409878 Rpal_2218 Rhodopseudomonas palustris TIE-1 CDP-diacylglycerol/serine O-phosphatidyltransferase YP_001991214.1 2406062 D 395960 CDS YP_001991215.1 192290610 6409879 2407085..2407804 1 NC_011004.1 KEGG: bbt:BBta_3507 hypothetical protein; hypothetical protein 2407804 6409879 Rpal_2219 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991215.1 2407085 D 395960 CDS YP_001991216.1 192290611 6409880 2408036..2408809 1 NC_011004.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: bra:BRADO4687 chemotaxis protein MotA (flagellar motor component); MotA/TolQ/ExbB proton channel 2408809 6409880 Rpal_2220 Rhodopseudomonas palustris TIE-1 MotA/TolQ/ExbB proton channel YP_001991216.1 2408036 D 395960 CDS YP_001991217.1 192290612 6409881 2408840..2409664 1 NC_011004.1 PFAM: OmpA/MotB domain protein; KEGG: bja:blr3801 probable chemotaxis protein; OmpA/MotB domain-containing protein 2409664 6409881 Rpal_2221 Rhodopseudomonas palustris TIE-1 OmpA/MotB domain-containing protein YP_001991217.1 2408840 D 395960 CDS YP_001991218.1 192290613 6409882 2409898..2411787 1 NC_011004.1 PFAM: K potassium transporter; KEGG: bbt:BBta_3512 low affinity potassium transporter (Kup family); K potassium transporter 2411787 6409882 Rpal_2222 Rhodopseudomonas palustris TIE-1 K potassium transporter YP_001991218.1 2409898 D 395960 CDS YP_001991219.1 192290614 6409883 2411997..2412323 1 NC_011004.1 SMART: rhodanese domain protein; KEGG: bja:blr3804 hypothetical protein; rhodanese domain-containing protein 2412323 6409883 Rpal_2223 Rhodopseudomonas palustris TIE-1 rhodanese domain-containing protein YP_001991219.1 2411997 D 395960 CDS YP_001991220.1 192290615 6409884 2412346..2413503 1 NC_011004.1 PFAM: aminotransferase class I and II; KEGG: bbt:BBta_3515 hypothetical protein; hypothetical protein 2413503 6409884 Rpal_2224 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991220.1 2412346 D 395960 CDS YP_001991221.1 192290616 6409885 2413511..2414626 1 NC_011004.1 PFAM: extracellular solute-binding protein family 1; KEGG: nha:Nham_1501 extracellular solute-binding protein, family 1; family 1 extracellular solute-binding protein 2414626 6409885 Rpal_2225 Rhodopseudomonas palustris TIE-1 family 1 extracellular solute-binding protein YP_001991221.1 2413511 D 395960 CDS YP_001991222.1 192290617 6409886 2414739..2415878 1 NC_011004.1 PFAM: protein of unknown function DUF1551; hypothetical protein 2415878 6409886 Rpal_2226 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991222.1 2414739 D 395960 CDS YP_001991223.1 192290618 6409887 complement(2415894..2417852) 1 NC_011004.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tac:Ta0491 P-methyltransferase related protein; radical SAM domain-containing protein 2417852 6409887 Rpal_2227 Rhodopseudomonas palustris TIE-1 radical SAM domain-containing protein YP_001991223.1 2415894 R 395960 CDS YP_001991224.1 192290619 6409888 complement(2418138..2419070) 1 NC_011004.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 2419070 6409888 Rpal_2228 Rhodopseudomonas palustris TIE-1 lipid A biosynthesis lauroyl acyltransferase YP_001991224.1 2418138 R 395960 CDS YP_001991225.1 192290620 6409889 complement(2419070..2420092) 1 NC_011004.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xau:Xaut_1258 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase zinc-binding domain-containing protein 2420092 6409889 Rpal_2229 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase zinc-binding domain-containing protein YP_001991225.1 2419070 R 395960 CDS YP_001991226.1 192290621 6409890 complement(2420189..2421469) 1 NC_011004.1 FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-(acyl carrier protein) synthase II 2421469 6409890 Rpal_2230 Rhodopseudomonas palustris TIE-1 3-oxoacyl-(acyl carrier protein) synthase II YP_001991226.1 2420189 R 395960 CDS YP_001991227.1 192290622 6409891 complement(2421480..2422688) 1 NC_011004.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 2422688 6409891 Rpal_2231 Rhodopseudomonas palustris TIE-1 3-oxoacyl-(acyl carrier protein) synthase II YP_001991227.1 2421480 R 395960 CDS YP_001991228.1 192290623 6409892 complement(2422681..2423151) 1 NC_011004.1 PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: nwi:Nwi_1245 3-hydroxymyristoyl-acyl carrier protein dehydratase; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ 2423151 6409892 Rpal_2232 Rhodopseudomonas palustris TIE-1 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_001991228.1 2422681 R 395960 CDS YP_001991229.1 192290624 6409893 complement(2423177..2423458) 1 NC_011004.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; acyl carrier protein 2423458 6409893 Rpal_2233 Rhodopseudomonas palustris TIE-1 acyl carrier protein YP_001991229.1 2423177 R 395960 CDS YP_001991230.1 192290625 6409894 complement(2423625..2423978) 1 NC_011004.1 KEGG: bbt:BBta_3523 hypothetical protein; hypothetical protein 2423978 6409894 Rpal_2234 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991230.1 2423625 R 395960 CDS YP_001991231.1 192290626 6409895 2424175..2424798 1 NC_011004.1 PFAM: ParB-like nuclease; KEGG: bbt:BBta_3524 hypothetical protein; ParB-like nuclease 2424798 6409895 Rpal_2235 Rhodopseudomonas palustris TIE-1 ParB-like nuclease YP_001991231.1 2424175 D 395960 CDS YP_001991232.1 192290627 6409896 complement(2424807..2425286) 1 NC_011004.1 PFAM: MgtC/SapB transporter; KEGG: bja:bll3816 sulfur-regulated protein; MgtC/SapB transporter 2425286 6409896 Rpal_2236 Rhodopseudomonas palustris TIE-1 MgtC/SapB transporter YP_001991232.1 2424807 R 395960 CDS YP_001991233.1 192290628 6409897 2425702..2428035 1 NC_011004.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_0972 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2428035 6409897 Rpal_2237 Rhodopseudomonas palustris TIE-1 TonB-dependent siderophore receptor YP_001991233.1 2425702 D 395960 CDS YP_001991234.1 192290629 6409898 complement(2428040..2429791) 1 NC_011004.1 PFAM: protein of unknown function DUF87; KEGG: nha:Nham_1508 protein of unknown function DUF87; hypothetical protein 2429791 6409898 Rpal_2238 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991234.1 2428040 R 395960 CDS YP_001991235.1 192290630 6409899 2430124..2430705 1 NC_011004.1 KEGG: swi:Swit_2155 hypothetical protein; hypothetical protein 2430705 6409899 Rpal_2239 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991235.1 2430124 D 395960 CDS YP_001991236.1 192290631 6409900 complement(2430730..2431623) 1 NC_011004.1 KEGG: nwi:Nwi_2345 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB 2431623 6409900 Rpal_2240 Rhodopseudomonas palustris TIE-1 phosphoserine phosphatase SerB YP_001991236.1 2430730 R 395960 CDS YP_001991237.1 192290632 6409901 2431667..2432572 1 NC_011004.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 2432572 miaA 6409901 miaA Rhodopseudomonas palustris TIE-1 tRNA delta(2)-isopentenylpyrophosphate transferase YP_001991237.1 2431667 D 395960 CDS YP_001991238.1 192290633 6409902 2432938..2434716 1 NC_011004.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bra:BRADO5564 acetolactate synthase 3 catalytic subunit; acetolactate synthase 3 catalytic subunit 2434716 6409902 Rpal_2242 Rhodopseudomonas palustris TIE-1 acetolactate synthase 3 catalytic subunit YP_001991238.1 2432938 D 395960 CDS YP_001991239.1 192290634 6409903 2434848..2435390 1 NC_011004.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2435390 ilvH 6409903 ilvH Rhodopseudomonas palustris TIE-1 acetolactate synthase 3 regulatory subunit YP_001991239.1 2434848 D 395960 CDS YP_001991240.1 192290635 6409904 complement(2435394..2435792) 1 NC_011004.1 KEGG: xcv:XCV0079 hypothetical protein; hypothetical protein 2435792 6409904 Rpal_2244 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991240.1 2435394 R 395960 CDS YP_001991241.1 192290636 6409905 2435977..2436879 1 NC_011004.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:bll6499 amino acid metabolite efflux pump; hypothetical protein 2436879 6409905 Rpal_2245 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991241.1 2435977 D 395960 CDS YP_001991242.1 192290637 6409906 2437074..2438093 1 NC_011004.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2438093 6409906 Rpal_2246 Rhodopseudomonas palustris TIE-1 ketol-acid reductoisomerase YP_001991242.1 2437074 D 395960 CDS YP_001991243.1 192290638 6409907 2438382..2439110 1 NC_011004.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_5550 GntR-like protein; GntR family transcriptional regulator 2439110 6409907 Rpal_2247 Rhodopseudomonas palustris TIE-1 GntR family transcriptional regulator YP_001991243.1 2438382 D 395960 CDS YP_001991244.1 192290639 6409908 2439209..2440441 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO0975 ABC-type branched-chain amino acid transporter periplasmic binding protein; branched-chain amino acid ABC transporter periplasmic protein 2440441 6409908 Rpal_2248 Rhodopseudomonas palustris TIE-1 branched-chain amino acid ABC transporter periplasmic protein YP_001991244.1 2439209 D 395960 CDS YP_001991245.1 192290640 6409909 2440568..2441422 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO5556 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2441422 6409909 Rpal_2249 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001991245.1 2440568 D 395960 CDS YP_001991246.1 192290641 6409910 2442009..2443073 1 NC_011004.1 hypothetical protein 2443073 6409910 Rpal_2250 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991246.1 2442009 D 395960 CDS YP_001991247.1 192290642 6409911 complement(2443225..2444772) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bra:BRADO5551 glycine betaine/carnitine/choline ABC transporter (permease and substrate binding protein); glycine/betaine ABC transporter substrate-binding protein 2444772 6409911 Rpal_2251 Rhodopseudomonas palustris TIE-1 glycine/betaine ABC transporter substrate-binding protein YP_001991247.1 2443225 R 395960 CDS YP_001991248.1 192290643 6409912 complement(2444769..2445542) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2718 ABC transporter; ABC transporter 2445542 6409912 Rpal_2252 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991248.1 2444769 R 395960 CDS YP_001991249.1 192290644 6409913 2445611..2446471 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll6488 ABC transporter ATP-binding protein; ABC transporter 2446471 6409913 Rpal_2253 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991249.1 2445611 D 395960 CDS YP_001991250.1 192290645 6409914 2446701..2447495 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_6067 ABC transporter (permease protein); ABC transporter inner membrane protein 2447495 6409914 Rpal_2254 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001991250.1 2446701 D 395960 CDS YP_001991251.1 192290646 6409915 2447554..2448576 1 NC_011004.1 PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; KEGG: bbt:BBta_6066 ABC transporter (substrate-binding protein); ABC transporter substrate-binding protein 2448576 6409915 Rpal_2255 Rhodopseudomonas palustris TIE-1 ABC transporter substrate-binding protein YP_001991251.1 2447554 D 395960 CDS YP_001991252.1 192290647 6409916 2448584..2449300 1 NC_011004.1 KEGG: bbt:BBta_6065 hypothetical protein; hypothetical protein 2449300 6409916 Rpal_2256 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991252.1 2448584 D 395960 CDS YP_001991253.1 192290648 6409917 complement(2449362..2450372) 1 NC_011004.1 KEGG: mlo:mll5831 biotin synthetase; TIGRFAM: biotin synthase; PFAM: radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 2450372 6409917 Rpal_2257 Rhodopseudomonas palustris TIE-1 biotin synthase YP_001991253.1 2449362 R 395960 CDS YP_001991254.1 192290649 6409918 2450642..2450791 1 NC_011004.1 hypothetical protein 2450791 6409918 Rpal_2258 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991254.1 2450642 D 395960 CDS YP_001991255.1 192290650 6409919 2450888..2452462 1 NC_011004.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2452462 6409919 Rpal_2259 Rhodopseudomonas palustris TIE-1 2-isopropylmalate synthase YP_001991255.1 2450888 D 395960 CDS YP_001991256.1 192290651 6409920 2452686..2453690 1 NC_011004.1 TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bra:BRADO5527 TRAP-type C4-dicarboxylate transport system, binding periplasmic protein (DctP subunit); TRAP dicarboxylate transporter subunit DctP 2453690 6409920 Rpal_2260 Rhodopseudomonas palustris TIE-1 TRAP dicarboxylate transporter subunit DctP YP_001991256.1 2452686 D 395960 CDS YP_001991257.1 192290652 6409921 2453829..2454413 1 NC_011004.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bra:BRADO5526 TRAP-type C4-dicarboxylate transport system, small permease component (DctQ subunit); tripartite AtP-independent periplasmic transporter subunit DctQ 2454413 6409921 Rpal_2261 Rhodopseudomonas palustris TIE-1 tripartite AtP-independent periplasmic transporter subunit DctQ YP_001991257.1 2453829 D 395960 CDS YP_001991258.1 192290653 6409922 2454410..2455735 1 NC_011004.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bra:BRADO5525 TRAP-type C4-dicarboxylate transport system, large permease component (DctM subunit); TRAP dicarboxylate transporter subunit DctM 2455735 6409922 Rpal_2262 Rhodopseudomonas palustris TIE-1 TRAP dicarboxylate transporter subunit DctM YP_001991258.1 2454410 D 395960 CDS YP_001991259.1 192290654 6409923 2455868..2456467 1 NC_011004.1 KEGG: bbt:BBta_6040 exported protein of unknown function; hypothetical protein 2456467 6409923 Rpal_2263 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991259.1 2455868 D 395960 CDS YP_001991260.1 192290655 6409925 complement(2456985..2457260) 1 NC_011004.1 KEGG: bra:BRADO3248 hypothetical protein; hypothetical protein 2457260 6409925 Rpal_2264 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991260.1 2456985 R 395960 CDS YP_001991261.1 192290656 6409926 2457307..2457483 1 NC_011004.1 hypothetical protein 2457483 6409926 Rpal_2265 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991261.1 2457307 D 395960 CDS YP_001991262.1 192290657 6409927 complement(2457504..2457635) 1 NC_011004.1 hypothetical protein 2457635 6409927 Rpal_2266 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991262.1 2457504 R 395960 CDS YP_001991263.1 192290658 6409928 complement(2457778..2458128) 1 NC_011004.1 hypothetical protein 2458128 6409928 Rpal_2267 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991263.1 2457778 R 395960 CDS YP_001991264.1 192290659 6409929 complement(2458128..2458355) 1 NC_011004.1 hypothetical protein 2458355 6409929 Rpal_2268 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991264.1 2458128 R 395960 CDS YP_001991265.1 192290660 6409930 complement(2458366..2458677) 1 NC_011004.1 hypothetical protein 2458677 6409930 Rpal_2269 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991265.1 2458366 R 395960 CDS YP_001991266.1 192290661 6409931 complement(2458668..2459120) 1 NC_011004.1 hypothetical protein 2459120 6409931 Rpal_2270 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991266.1 2458668 R 395960 CDS YP_001991267.1 192290662 6409932 complement(2459253..2459561) 1 NC_011004.1 KEGG: nha:Nham_1977 hypothetical protein; hypothetical protein 2459561 6409932 Rpal_2271 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991267.1 2459253 R 395960 CDS YP_001991268.1 192290663 6409933 complement(2459573..2461594) 1 NC_011004.1 PFAM: ATPase AAA; SMART: ATPase AAA; KEGG: nha:Nham_1979 ATPase AAA, central region; ATPase AAA 2461594 6409933 Rpal_2272 Rhodopseudomonas palustris TIE-1 ATPase AAA YP_001991268.1 2459573 R 395960 CDS YP_001991269.1 192290664 6409934 2461677..2462114 1 NC_011004.1 hypothetical protein 2462114 6409934 Rpal_2273 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991269.1 2461677 D 395960 CDS YP_001991270.1 192290665 6409935 2462509..2462652 1 NC_011004.1 hypothetical protein 2462652 6409935 Rpal_2274 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991270.1 2462509 D 395960 CDS YP_001991271.1 192290666 6409936 2462645..2463049 1 NC_011004.1 hypothetical protein 2463049 6409936 Rpal_2275 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991271.1 2462645 D 395960 CDS YP_001991272.1 192290667 6409938 2463449..2464042 1 NC_011004.1 KEGG: nha:Nham_2002 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 2464042 6409938 Rpal_2277 Rhodopseudomonas palustris TIE-1 DEAD/DEAH box helicase YP_001991272.1 2463449 D 395960 CDS YP_001991273.1 192290668 6409939 2464559..2469316 1 NC_011004.1 PFAM: NERD domain protein; SMART: ATPase AAA; KEGG: pol:Bpro_5029 superfamily I DNA and RNA helicases and helicase subunits-like; NERD domain-containing protein 2469316 6409939 Rpal_2278 Rhodopseudomonas palustris TIE-1 NERD domain-containing protein YP_001991273.1 2464559 D 395960 CDS YP_001991274.1 192290669 6409940 2469313..2470791 1 NC_011004.1 KEGG: spq:SPAB_03320 hypothetical protein; hypothetical protein 2470791 6409940 Rpal_2279 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991274.1 2469313 D 395960 CDS YP_001991275.1 192290670 6409942 2472192..2472608 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; KEGG: mrd:Mrad2831_3274 PAS/PAC sensor signal transduction histidine kinase; histidine kinase 2472608 6409942 Rpal_2281 Rhodopseudomonas palustris TIE-1 histidine kinase YP_001991275.1 2472192 D 395960 CDS YP_001991276.1 192290671 6409943 complement(2472605..2472874) 1 NC_011004.1 PFAM: helix-turn-helix domain protein; KEGG: oan:Oant_1301 transcriptional regulator, XRE family; XRE family transcriptional regulator 2472874 6409943 Rpal_2282 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001991276.1 2472605 R 395960 CDS YP_001991277.1 192290672 6409944 2473021..2473557 1 NC_011004.1 hypothetical protein 2473557 6409944 Rpal_2283 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991277.1 2473021 D 395960 CDS YP_001991278.1 192290673 6409946 complement(2474118..2474801) 1 NC_011004.1 hypothetical protein 2474801 6409946 Rpal_2285 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991278.1 2474118 R 395960 CDS YP_001991279.1 192290674 6409947 2475251..2476168 1 NC_011004.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bbt:BBta_7268 cation efflux system protein CzcD; cation diffusion facilitator family transporter 2476168 6409947 Rpal_2286 Rhodopseudomonas palustris TIE-1 cation diffusion facilitator family transporter YP_001991279.1 2475251 D 395960 CDS YP_001991280.1 192290675 6409948 2476693..2477169 1 NC_011004.1 PFAM: MgtC/SapB transporter; KEGG: shw:Sputw3181_3581 MgtC/SapB transporter; MgtC/SapB transporter 2477169 6409948 Rpal_2287 Rhodopseudomonas palustris TIE-1 MgtC/SapB transporter YP_001991280.1 2476693 D 395960 CDS YP_001991281.1 192290676 6409949 2477558..2479060 1 NC_011004.1 KEGG: sit:TM1040_0424 hypothetical protein; hypothetical protein 2479060 6409949 Rpal_2288 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991281.1 2477558 D 395960 CDS YP_001991282.1 192290677 6409950 complement(2479753..2480004) 1 NC_011004.1 hypothetical protein 2480004 6409950 Rpal_2289 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991282.1 2479753 R 395960 CDS YP_001991283.1 192290678 6409951 complement(2480211..2480741) 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: bja:blr4984 transcriptional regulatory protein; MarR family transcriptional regulator 2480741 6409951 Rpal_2290 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001991283.1 2480211 R 395960 CDS YP_001991284.1 192290679 6409952 complement(2480914..2481522) 1 NC_011004.1 PFAM: SNARE associated Golgi protein; KEGG: mex:Mext_0105 SNARE associated Golgi protein; hypothetical protein 2481522 6409952 Rpal_2291 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991284.1 2480914 R 395960 CDS YP_001991285.1 192290680 6409953 complement(2481624..2481923) 1 NC_011004.1 KEGG: atc:AGR_pAT_689 hypothetical protein; hypothetical protein 2481923 6409953 Rpal_2292 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991285.1 2481624 R 395960 CDS YP_001991286.1 192290681 6409954 complement(2482002..2484563) 1 NC_011004.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_7296 cadmium-exporting ATPase; ATPase P 2484563 6409954 Rpal_2293 Rhodopseudomonas palustris TIE-1 ATPase P YP_001991286.1 2482002 R 395960 CDS YP_001991287.1 192290682 6409955 complement(2484729..2485463) 1 NC_011004.1 PFAM: flagellar basal body rod protein; KEGG: bbt:BBta_p0123 flagellar basal-body rod protein FlgF; flagellar basal body rod protein 2485463 6409955 Rpal_2294 Rhodopseudomonas palustris TIE-1 flagellar basal body rod protein YP_001991287.1 2484729 R 395960 CDS YP_001991288.1 192290683 6409956 complement(2485784..2486365) 1 NC_011004.1 hypothetical protein 2486365 6409956 Rpal_2295 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991288.1 2485784 R 395960 CDS YP_001991289.1 192290684 6409957 2487098..2487619 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: bja:blr4984 transcriptional regulatory protein; MarR family transcriptional regulator 2487619 6409957 Rpal_2296 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001991289.1 2487098 D 395960 CDS YP_001991290.1 192290685 6409958 2487759..2488145 1 NC_011004.1 KEGG: nha:Nham_1847 hypothetical protein; hypothetical protein 2488145 6409958 Rpal_2297 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991290.1 2487759 D 395960 CDS YP_001991291.1 192290686 6409959 2488205..2489476 1 NC_011004.1 PFAM: outer membrane efflux protein; KEGG: nha:Nham_1848 outer membrane efflux protein; outer membrane efflux protein 2489476 6409959 Rpal_2298 Rhodopseudomonas palustris TIE-1 outer membrane efflux protein YP_001991291.1 2488205 D 395960 CDS YP_001991292.1 192290687 6409960 2489473..2490465 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: xau:Xaut_3982 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit 2490465 6409960 Rpal_2299 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001991292.1 2489473 D 395960 CDS YP_001991293.1 192290688 6409961 2490523..2493735 1 NC_011004.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: nha:Nham_4533 heavy metal efflux pump CzcA; CzcA family heavy metal efflux pump 2493735 6409961 Rpal_2300 Rhodopseudomonas palustris TIE-1 CzcA family heavy metal efflux pump YP_001991293.1 2490523 D 395960 CDS YP_001991294.1 192290689 6409962 2493735..2494103 1 NC_011004.1 KEGG: xau:Xaut_3985 hypothetical protein; hypothetical protein 2494103 6409962 Rpal_2301 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991294.1 2493735 D 395960 CDS YP_001991295.1 192290690 6409963 2494175..2495341 1 NC_011004.1 KEGG: bbt:BBta_7260 OpgC protein; OpgC protein 2495341 6409963 Rpal_2302 Rhodopseudomonas palustris TIE-1 OpgC protein YP_001991295.1 2494175 D 395960 CDS YP_001991296.1 192290691 6409964 2497057..2497431 1 NC_011004.1 hypothetical protein 2497431 6409964 Rpal_2303 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991296.1 2497057 D 395960 CDS YP_001991297.1 192290692 6409965 2497442..2497792 1 NC_011004.1 hypothetical protein 2497792 6409965 Rpal_2304 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991297.1 2497442 D 395960 CDS YP_001991298.1 192290693 6409966 2497792..2498040 1 NC_011004.1 hypothetical protein 2498040 6409966 Rpal_2305 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991298.1 2497792 D 395960 CDS YP_001991299.1 192290694 6409967 complement(2498405..2498644) 1 NC_011004.1 hypothetical protein 2498644 6409967 Rpal_2306 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991299.1 2498405 R 395960 CDS YP_001991300.1 192290695 6409968 complement(2498699..2499031) 1 NC_011004.1 hypothetical protein 2499031 6409968 Rpal_2307 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991300.1 2498699 R 395960 CDS YP_001991301.1 192290696 6409969 complement(2499040..2499213) 1 NC_011004.1 KEGG: sun:SUN_2228 hypothetical protein; hypothetical protein 2499213 6409969 Rpal_2308 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991301.1 2499040 R 395960 CDS YP_001991302.1 192290697 6409970 complement(2499654..2499941) 1 NC_011004.1 hypothetical protein 2499941 6409970 Rpal_2309 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991302.1 2499654 R 395960 CDS YP_001991303.1 192290698 6409971 2500353..2500859 1 NC_011004.1 hypothetical protein 2500859 6409971 Rpal_2310 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991303.1 2500353 D 395960 CDS YP_001991304.1 192290699 6409972 complement(2500831..2501148) 1 NC_011004.1 hypothetical protein 2501148 6409972 Rpal_2311 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991304.1 2500831 R 395960 CDS YP_001991305.1 192290700 6409973 2501293..2502141 1 NC_011004.1 PFAM: metallophosphoesterase; KEGG: ajs:Ajs_0506 metallophosphoesterase; metallophosphoesterase 2502141 6409973 Rpal_2312 Rhodopseudomonas palustris TIE-1 metallophosphoesterase YP_001991305.1 2501293 D 395960 CDS YP_001991306.1 192290701 6409974 2502141..2502623 1 NC_011004.1 PFAM: VRR-NUC domain protein; KEGG: ppf:Pput_4127 VRR-NUC domain protein; VRR-NUC domain-containing protein 2502623 6409974 Rpal_2313 Rhodopseudomonas palustris TIE-1 VRR-NUC domain-containing protein YP_001991306.1 2502141 D 395960 CDS YP_001991307.1 192290702 6409975 2502620..2503195 1 NC_011004.1 hypothetical protein 2503195 6409975 Rpal_2314 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991307.1 2502620 D 395960 CDS YP_001991308.1 192290703 6409976 2503192..2503536 1 NC_011004.1 hypothetical protein 2503536 6409976 Rpal_2315 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991308.1 2503192 D 395960 CDS YP_001991309.1 192290704 6409977 complement(2503568..2504509) 1 NC_011004.1 TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: nha:Nham_3852 ATP dependent DNA ligase; DNA polymerase LigD, ligase domain-containing protein 2504509 6409977 Rpal_2316 Rhodopseudomonas palustris TIE-1 DNA polymerase LigD, ligase domain-containing protein YP_001991309.1 2503568 R 395960 CDS YP_001991310.1 192290705 6409978 2504647..2504940 1 NC_011004.1 hypothetical protein 2504940 6409978 Rpal_2317 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991310.1 2504647 D 395960 CDS YP_001991311.1 192290706 6409979 2504894..2505142 1 NC_011004.1 hypothetical protein 2505142 6409979 Rpal_2318 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991311.1 2504894 D 395960 CDS YP_001991312.1 192290707 6409980 2505146..2506021 1 NC_011004.1 KEGG: sco:SCO3290 hypothetical protein; hypothetical protein 2506021 6409980 Rpal_2319 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991312.1 2505146 D 395960 CDS YP_001991313.1 192290708 6409981 2506018..2506560 1 NC_011004.1 KEGG: bja:bll7218 hypothetical protein; hypothetical protein 2506560 6409981 Rpal_2320 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991313.1 2506018 D 395960 CDS YP_001991314.1 192290709 6409982 2507151..2507495 1 NC_011004.1 hypothetical protein 2507495 6409982 Rpal_2321 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991314.1 2507151 D 395960 CDS YP_001991315.1 192290710 6409983 2507566..2508195 1 NC_011004.1 hypothetical protein 2508195 6409983 Rpal_2322 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991315.1 2507566 D 395960 CDS YP_001991316.1 192290711 6409984 2508206..2508478 1 NC_011004.1 hypothetical protein 2508478 6409984 Rpal_2323 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991316.1 2508206 D 395960 CDS YP_001991317.1 192290712 6409985 complement(2508562..2509047) 1 NC_011004.1 KEGG: mrd:Mrad2831_2505 hypothetical protein; hypothetical protein 2509047 6409985 Rpal_2324 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991317.1 2508562 R 395960 CDS YP_001991318.1 192290713 6409986 complement(2509550..2509855) 1 NC_011004.1 hypothetical protein 2509855 6409986 Rpal_2325 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991318.1 2509550 R 395960 CDS YP_001991319.1 192290714 6409987 2510751..2510909 1 NC_011004.1 hypothetical protein 2510909 6409987 Rpal_2326 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991319.1 2510751 D 395960 CDS YP_001991320.1 192290715 6409988 2510995..2511282 1 NC_011004.1 hypothetical protein 2511282 6409988 Rpal_2327 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991320.1 2510995 D 395960 CDS YP_001991321.1 192290716 6409989 2511745..2512023 1 NC_011004.1 hypothetical protein 2512023 6409989 Rpal_2328 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991321.1 2511745 D 395960 CDS YP_001991322.1 192290717 6409990 complement(2512768..2513784) 1 NC_011004.1 KEGG: ade:Adeh_1681 PE-PGRS family protein; hypothetical protein 2513784 6409990 Rpal_2329 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991322.1 2512768 R 395960 CDS YP_001991323.1 192290718 6409991 2514112..2514834 1 NC_011004.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: nwi:Nwi_0627 transcriptional regulatory protein, LuxR family; LuxR family transcriptional regulator 2514834 6409991 Rpal_2330 Rhodopseudomonas palustris TIE-1 LuxR family transcriptional regulator YP_001991323.1 2514112 D 395960 CDS YP_001991324.1 192290719 6409992 2514924..2515562 1 NC_011004.1 PFAM: autoinducer synthesis protein; KEGG: nwi:Nwi_0626 autoinducer synthesis protein; autoinducer synthesis protein 2515562 6409992 Rpal_2331 Rhodopseudomonas palustris TIE-1 autoinducer synthesis protein YP_001991324.1 2514924 D 395960 CDS YP_001991325.1 192290720 6409995 2518491..2518646 1 NC_011004.1 hypothetical protein 2518646 6409995 Rpal_2334 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991325.1 2518491 D 395960 CDS YP_001991326.1 192290721 6409996 complement(2518798..2520261) 1 NC_011004.1 KEGG: cvi:CV_2405 hypothetical protein; hypothetical protein 2520261 6409996 Rpal_2335 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991326.1 2518798 R 395960 CDS YP_001991327.1 192290722 6409997 2520410..2522182 1 NC_011004.1 KEGG: bra:BRADO4720 hypothetical protein; hypothetical protein 2522182 6409997 Rpal_2336 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991327.1 2520410 D 395960 CDS YP_001991328.1 192290723 6409999 2522689..2522961 1 NC_011004.1 hypothetical protein 2522961 6409999 Rpal_2338 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991328.1 2522689 D 395960 CDS YP_001991329.1 192290724 6410000 complement(2522993..2524444) 1 NC_011004.1 KEGG: mrd:Mrad2831_2505 hypothetical protein; hypothetical protein 2524444 6410000 Rpal_2339 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991329.1 2522993 R 395960 CDS YP_001991330.1 192290725 6410002 2524882..2525508 1 NC_011004.1 hypothetical protein 2525508 6410002 Rpal_2340 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991330.1 2524882 D 395960 CDS YP_001991331.1 192290726 6410003 2525654..2528011 1 NC_011004.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: azc:AZC_3019 arginine/lysine/ornithine decarboxylases; ornithine decarboxylase 2528011 6410003 Rpal_2341 Rhodopseudomonas palustris TIE-1 ornithine decarboxylase YP_001991331.1 2525654 D 395960 CDS YP_001991332.1 192290727 6410004 2528034..2528576 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xau:Xaut_0639 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2528576 6410004 Rpal_2342 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001991332.1 2528034 D 395960 CDS YP_001991333.1 192290728 6410005 2528698..2529057 1 NC_011004.1 KEGG: bja:blr4934 hypothetical protein; hypothetical protein 2529057 6410005 Rpal_2343 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991333.1 2528698 D 395960 CDS YP_001991334.1 192290729 6410006 2529112..2530383 1 NC_011004.1 PFAM: outer membrane efflux protein; KEGG: bja:blr4935 divalent cation resistant determinant protein C; outer membrane efflux protein 2530383 6410006 Rpal_2344 Rhodopseudomonas palustris TIE-1 outer membrane efflux protein YP_001991334.1 2529112 D 395960 CDS YP_001991335.1 192290730 6410007 2530380..2531375 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: xau:Xaut_3982 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit 2531375 6410007 Rpal_2345 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001991335.1 2530380 D 395960 CDS YP_001991336.1 192290731 6410008 2531405..2534620 1 NC_011004.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: nha:Nham_4533 heavy metal efflux pump CzcA; CzcA family heavy metal efflux pump 2534620 6410008 Rpal_2346 Rhodopseudomonas palustris TIE-1 CzcA family heavy metal efflux pump YP_001991336.1 2531405 D 395960 CDS YP_001991337.1 192290732 6410009 2534617..2534985 1 NC_011004.1 KEGG: xau:Xaut_3985 hypothetical protein; hypothetical protein 2534985 6410009 Rpal_2347 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991337.1 2534617 D 395960 CDS YP_001991338.1 192290733 6410010 complement(2535046..2535315) 1 NC_011004.1 KEGG: rme:Rmet_4922 hypothetical protein; hypothetical protein 2535315 6410010 Rpal_2348 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991338.1 2535046 R 395960 CDS YP_001991339.1 192290734 6410011 complement(2535389..2536288) 1 NC_011004.1 KEGG: bbt:BBta_6006 hypothetical protein; hypothetical protein 2536288 6410011 Rpal_2349 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991339.1 2535389 R 395960 CDS YP_001991340.1 192290735 6410012 2536429..2538723 1 NC_011004.1 PFAM: FMN-binding domain protein; KEGG: bja:blr0314 nitrous oxide reductase expression regulator; FMN-binding domain-containing protein 2538723 6410012 Rpal_2350 Rhodopseudomonas palustris TIE-1 FMN-binding domain-containing protein YP_001991340.1 2536429 D 395960 CDS YP_001991341.1 192290736 6410013 2538742..2540679 1 NC_011004.1 reduces nitrous oxide to nitrogen; nitrous-oxide reductase 2540679 6410013 Rpal_2351 Rhodopseudomonas palustris TIE-1 nitrous-oxide reductase YP_001991341.1 2538742 D 395960 CDS YP_001991342.1 192290737 6410014 2540682..2542046 1 NC_011004.1 PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; carbohydrate-binding and sugar hydrolysis; KEGG: bja:blr0316 periplasmic copper-binding precursor; periplasmic copper-binding protein 2542046 6410014 Rpal_2352 Rhodopseudomonas palustris TIE-1 periplasmic copper-binding protein YP_001991342.1 2540682 D 395960 CDS YP_001991343.1 192290738 6410015 2542043..2542948 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr0317 copper ABC transporter; ABC transporter 2542948 6410015 Rpal_2353 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991343.1 2542043 D 395960 CDS YP_001991344.1 192290739 6410016 2542945..2543772 1 NC_011004.1 KEGG: bja:blr0318 nitrous oxide metabolic protein; nitrous oxide metabolic protein 2543772 6410016 Rpal_2354 Rhodopseudomonas palustris TIE-1 nitrous oxide metabolic protein YP_001991344.1 2542945 D 395960 CDS YP_001991345.1 192290740 6410017 2543769..2544320 1 NC_011004.1 PFAM: NosL family protein; KEGG: bja:blr0319 NosL protein; NosL family protein 2544320 6410017 Rpal_2355 Rhodopseudomonas palustris TIE-1 NosL family protein YP_001991345.1 2543769 D 395960 CDS YP_001991346.1 192290741 6410018 2544333..2545331 1 NC_011004.1 PFAM: ApbE family lipoprotein; KEGG: bja:blr0320 NosX protein; ApbE family lipoprotein 2545331 6410018 Rpal_2356 Rhodopseudomonas palustris TIE-1 ApbE family lipoprotein YP_001991346.1 2544333 D 395960 CDS YP_001991347.1 192290742 6410019 2545367..2545837 1 NC_011004.1 KEGG: pla:Plav_1007 hypothetical protein; hypothetical protein 2545837 6410019 Rpal_2357 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991347.1 2545367 D 395960 CDS YP_001991348.1 192290743 6410020 2545924..2546214 1 NC_011004.1 KEGG: mag:amb3576 hypothetical protein; hypothetical protein 2546214 6410020 Rpal_2358 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991348.1 2545924 D 395960 CDS YP_001991349.1 192290744 6410021 2546211..2547488 1 NC_011004.1 KEGG: mag:amb3575 hypothetical protein; hypothetical protein 2547488 6410021 Rpal_2359 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991349.1 2546211 D 395960 CDS YP_001991350.1 192290745 6410022 2547508..2548017 1 NC_011004.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: mag:amb3574 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 2548017 6410022 Rpal_2360 Rhodopseudomonas palustris TIE-1 hemerythrin HHE cation binding domain-containing protein YP_001991350.1 2547508 D 395960 CDS YP_001991351.1 192290746 6410023 complement(2548169..2548420) 1 NC_011004.1 PFAM: protein of unknown function DUF378; KEGG: bra:BRADO1751 hypothetical protein; hypothetical protein 2548420 6410023 Rpal_2361 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991351.1 2548169 R 395960 CDS YP_001991352.1 192290747 6410024 complement(2548525..2549385) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO5453 oxidoreductase, NAD(P)-binding domain; short-chain dehydrogenase/reductase SDR 2549385 6410024 Rpal_2362 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001991352.1 2548525 R 395960 CDS YP_001991353.1 192290748 6410025 complement(2549453..2549821) 1 NC_011004.1 SMART: response regulator receiver; KEGG: mrd:Mrad2831_4234 response regulator receiver protein; response regulator receiver protein 2549821 6410025 Rpal_2363 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001991353.1 2549453 R 395960 CDS YP_001991354.1 192290749 6410026 complement(2549818..2551719) 1 NC_011004.1 KEGG: mrd:Mrad2831_6264 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; signal transduction histidine kinase 2551719 6410026 Rpal_2364 Rhodopseudomonas palustris TIE-1 signal transduction histidine kinase YP_001991354.1 2549818 R 395960 CDS YP_001991355.1 192290750 6410027 complement(2551807..2552004) 1 NC_011004.1 hypothetical protein 2552004 6410027 Rpal_2365 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991355.1 2551807 R 395960 CDS YP_001991356.1 192290751 6410028 complement(2552147..2552824) 1 NC_011004.1 PFAM: HWE histidine kinase; KEGG: mex:Mext_2764 HWE histidine kinase; signal transduction histidine kinase 2552824 6410028 Rpal_2366 Rhodopseudomonas palustris TIE-1 signal transduction histidine kinase YP_001991356.1 2552147 R 395960 CDS YP_001991357.1 192290752 6410029 complement(2552828..2553595) 1 NC_011004.1 PFAM: regulatory protein Crp; KEGG: mex:Mext_2763 cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator 2553595 6410029 Rpal_2367 Rhodopseudomonas palustris TIE-1 Crp/Fnr family transcriptional regulator YP_001991357.1 2552828 R 395960 CDS YP_001991358.1 192290753 6410030 2553883..2554005 1 NC_011004.1 hypothetical protein 2554005 6410030 Rpal_2368 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991358.1 2553883 D 395960 CDS YP_001991359.1 192290754 6410032 complement(2554537..2555706) 1 NC_011004.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ret:RHE_PB00045 alcohol dehydrogenase protein; alcohol dehydrogenase GroES domain-containing protein 2555706 6410032 Rpal_2370 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase GroES domain-containing protein YP_001991359.1 2554537 R 395960 CDS YP_001991360.1 192290755 6410033 2556153..2557085 1 NC_011004.1 PFAM: periplasmic binding protein; KEGG: nha:Nham_3728 periplasmic binding protein; periplasmic binding protein 2557085 6410033 Rpal_2371 Rhodopseudomonas palustris TIE-1 periplasmic binding protein YP_001991360.1 2556153 D 395960 CDS YP_001991361.1 192290756 6410034 complement(2557122..2557871) 1 NC_011004.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase 2557871 6410034 Rpal_2372 Rhodopseudomonas palustris TIE-1 uroporphyrin-III C-methyltransferase YP_001991361.1 2557122 R 395960 CDS YP_001991362.1 192290757 6410035 complement(2557871..2559232) 1 NC_011004.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 2559232 6410035 Rpal_2373 Rhodopseudomonas palustris TIE-1 cobyrinic acid a,c-diamide synthase YP_001991362.1 2557871 R 395960 CDS YP_001991363.1 192290758 6410036 complement(2559219..2559998) 1 NC_011004.1 KEGG: atc:AGR_C_5074 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase 2559998 6410036 Rpal_2374 Rhodopseudomonas palustris TIE-1 precorrin-4 C(11)-methyltransferase YP_001991363.1 2559219 R 395960 CDS YP_001991364.1 192290759 6410037 complement(2559995..2560387) 1 NC_011004.1 KEGG: mex:Mext_1035 CobE protein; CobE protein 2560387 6410037 Rpal_2375 Rhodopseudomonas palustris TIE-1 CobE protein YP_001991364.1 2559995 R 395960 CDS YP_001991365.1 192290760 6410038 complement(2560384..2561607) 1 NC_011004.1 KEGG: azc:AZC_3942 precorrin-6Y C5,15-methyltransferase; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE 2561607 6410038 Rpal_2376 Rhodopseudomonas palustris TIE-1 precorrin-6y C5,15-methyltransferase subunit CbiE YP_001991365.1 2560384 R 395960 CDS YP_001991366.1 192290761 6410039 2561639..2562388 1 NC_011004.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 2562388 6410039 Rpal_2377 Rhodopseudomonas palustris TIE-1 cobalt-precorrin-6x reductase YP_001991366.1 2561639 D 395960 CDS YP_001991367.1 192290762 6410040 complement(2562355..2563116) 1 NC_011004.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nar:Saro_0338 precorrin-3B C17-methyltransferase; precorrin-3B C(17)-methyltransferase 2563116 6410040 Rpal_2378 Rhodopseudomonas palustris TIE-1 precorrin-3B C(17)-methyltransferase YP_001991367.1 2562355 R 395960 CDS YP_001991368.1 192290763 6410041 complement(2563113..2563841) 1 NC_011004.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sil:SPO2866 precorrin-2 C20-methyltransferase; precorrin-2 C(20)-methyltransferase 2563841 6410041 Rpal_2379 Rhodopseudomonas palustris TIE-1 precorrin-2 C(20)-methyltransferase YP_001991368.1 2563113 R 395960 CDS YP_001991369.1 192290764 6410042 complement(2563838..2564467) 1 NC_011004.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase 2564467 cobH 6410042 cobH Rhodopseudomonas palustris TIE-1 precorrin-8X methylmutase YP_001991369.1 2563838 R 395960 CDS YP_001991370.1 192290765 6410043 complement(2564464..2565027) 1 NC_011004.1 KEGG: jan:Jann_2931 cobaltochelatase; hypothetical protein 2565027 6410043 Rpal_2381 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991370.1 2564464 R 395960 CDS YP_001991371.1 192290766 6410044 complement(2565428..2566564) 1 NC_011004.1 TIGRFAM: CitB domain protein; KEGG: rru:Rru_A2987 hypothetical protein; CitB domain-containing protein 2566564 6410044 Rpal_2382 Rhodopseudomonas palustris TIE-1 CitB domain-containing protein YP_001991371.1 2565428 R 395960 CDS YP_001991372.1 192290767 6410045 complement(2566551..2567855) 1 NC_011004.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 2567855 6410045 Rpal_2383 Rhodopseudomonas palustris TIE-1 tricarballylate dehydrogenase YP_001991372.1 2566551 R 395960 CDS YP_001991373.1 192290768 6410046 2568419..2569483 1 NC_011004.1 KEGG: cak:Caul_2742 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2569483 6410046 Rpal_2384 Rhodopseudomonas palustris TIE-1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_001991373.1 2568419 D 395960 CDS YP_001991374.1 192290769 6410047 2569480..2570250 1 NC_011004.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cak:Caul_2743 cobalamin 5'-phosphate synthase; cobalamin-5-phosphate synthase CobS 2570250 6410047 Rpal_2385 Rhodopseudomonas palustris TIE-1 cobalamin-5-phosphate synthase CobS YP_001991374.1 2569480 D 395960 CDS YP_001991375.1 192290770 6410048 2570334..2571908 1 NC_011004.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2571908 6410048 Rpal_2386 Rhodopseudomonas palustris TIE-1 cobyric acid synthase YP_001991375.1 2570334 D 395960 CDS YP_001991376.1 192290771 6410049 2571940..2572704 1 NC_011004.1 catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase 2572704 6410049 Rpal_2387 Rhodopseudomonas palustris TIE-1 precorrin 6A synthase YP_001991376.1 2571940 D 395960 CDS YP_001991377.1 192290772 6410050 2572824..2573588 1 NC_011004.1 PFAM: glutamine amidotransferase class-I; KEGG: xau:Xaut_4097 glutamine amidotransferase class-I; glutamine amidotransferase 2573588 6410050 Rpal_2388 Rhodopseudomonas palustris TIE-1 glutamine amidotransferase YP_001991377.1 2572824 D 395960 CDS YP_001991378.1 192290773 6410051 complement(2573593..2575242) 1 NC_011004.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: bja:bll4251 MFS permease; hypothetical protein 2575242 6410051 Rpal_2389 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991378.1 2573593 R 395960 CDS YP_001991379.1 192290774 6410052 2575569..2576219 1 NC_011004.1 PFAM: isochorismatase hydrolase; KEGG: bra:BRADO5128 isochorismatase family protein; isochorismatase hydrolase 2576219 6410052 Rpal_2390 Rhodopseudomonas palustris TIE-1 isochorismatase hydrolase YP_001991379.1 2575569 D 395960 CDS YP_001991380.1 192290775 6410053 2576244..2576534 1 NC_011004.1 PFAM: protein of unknown function DUF1427; KEGG: bja:bsl6958 hypothetical protein; hypothetical protein 2576534 6410053 Rpal_2391 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991380.1 2576244 D 395960 CDS YP_001991381.1 192290776 6410054 2576531..2578411 1 NC_011004.1 PFAM: Amidohydrolase 3; KEGG: bja:blr4259 hypothetical protein; amidohydrolase 2578411 6410054 Rpal_2392 Rhodopseudomonas palustris TIE-1 amidohydrolase YP_001991381.1 2576531 D 395960 CDS YP_001991382.1 192290777 6410055 2578413..2578838 1 NC_011004.1 PFAM: DoxX family protein; KEGG: bja:bll6956 hypothetical protein; DoxX family protein 2578838 6410055 Rpal_2393 Rhodopseudomonas palustris TIE-1 DoxX family protein YP_001991382.1 2578413 D 395960 CDS YP_001991383.1 192290778 6410056 2578858..2579778 1 NC_011004.1 KEGG: bja:blr4261 hypothetical protein; hypothetical protein 2579778 6410056 Rpal_2394 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991383.1 2578858 D 395960 CDS YP_001991384.1 192290779 6410057 2579775..2581208 1 NC_011004.1 KEGG: bja:blr4262 hypothetical protein; hypothetical protein 2581208 6410057 Rpal_2395 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991384.1 2579775 D 395960 CDS YP_001991385.1 192290780 6410058 complement(2581281..2582297) 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: atc:AGR_L_210 non-heme chloroperoxidase (chloride peroxidase) (CPO-P) (chloroperoxidase P); alpha/beta hydrolase fold protein 2582297 6410058 Rpal_2396 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001991385.1 2581281 R 395960 CDS YP_001991386.1 192290781 6410059 complement(2582338..2583054) 1 NC_011004.1 KEGG: azc:AZC_2121 hypothetical protein; hypothetical protein 2583054 6410059 Rpal_2397 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991386.1 2582338 R 395960 CDS YP_001991387.1 192290782 6410060 complement(2583206..2588344) 1 NC_011004.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: serine/threonine protein kinase; KEGG: bvi:Bcep1808_5666 histidine kinase, dimerisation/phosphoacceptor; ATP-binding protein 2588344 6410060 Rpal_2398 Rhodopseudomonas palustris TIE-1 ATP-binding protein YP_001991387.1 2583206 R 395960 CDS YP_001991388.1 192290783 6410061 complement(2588331..2588717) 1 NC_011004.1 PFAM: response regulator receiver; KEGG: azc:AZC_1362 two-component response regulator; response regulator receiver protein 2588717 6410061 Rpal_2399 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001991388.1 2588331 R 395960 CDS YP_001991389.1 192290784 6410062 complement(2588806..2589438) 1 NC_011004.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: azc:AZC_1361 high similarity to two-component response regulator; LuxR family transcriptional regulator 2589438 6410062 Rpal_2400 Rhodopseudomonas palustris TIE-1 LuxR family transcriptional regulator YP_001991389.1 2588806 R 395960 CDS YP_001991390.1 192290785 6410063 2589677..2590285 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pla:Plav_0517 helix-turn-helix-domain containing protein AraC type; AraC family transcriptional regulator 2590285 6410063 Rpal_2401 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001991390.1 2589677 D 395960 CDS YP_001991391.1 192290786 6410064 complement(2590325..2592250) 1 NC_011004.1 KEGG: bja:blr5735 transcriptional regulatory protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; ATPase AAA; Fis family transcriptional regulator 2592250 6410064 Rpal_2402 Rhodopseudomonas palustris TIE-1 Fis family transcriptional regulator YP_001991391.1 2590325 R 395960 CDS YP_001991392.1 192290787 6410065 2592412..2593800 1 NC_011004.1 KEGG: bja:bll5734 ABC transporter nitrate-binding protein; nitrate ABC transporter substrate-binding protein 2593800 6410065 Rpal_2403 Rhodopseudomonas palustris TIE-1 nitrate ABC transporter substrate-binding protein YP_001991392.1 2592412 D 395960 CDS YP_001991393.1 192290788 6410066 2593948..2594787 1 NC_011004.1 TIGRFAM: nitrate ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: bja:bll5733 nitrate ABC transporter permease protein; nitrate ABC transporter inner membrane subunit 2594787 6410066 Rpal_2404 Rhodopseudomonas palustris TIE-1 nitrate ABC transporter inner membrane subunit YP_001991393.1 2593948 D 395960 CDS YP_001991394.1 192290789 6410067 2594793..2595680 1 NC_011004.1 KEGG: bja:bll5732 ABC transporter ATP-binding protein; TIGRFAM: nitrate ABC transporter ATPase subunits C and D; PFAM: ABC transporter; SMART: ATPase AAA; nitrate ABC transporter ATPases C and D 2595680 6410067 Rpal_2405 Rhodopseudomonas palustris TIE-1 nitrate ABC transporter ATPases C and D YP_001991394.1 2594793 D 395960 CDS YP_001991395.1 192290790 6410068 2595723..2596211 1 NC_011004.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase 2596211 6410068 Rpal_2406 Rhodopseudomonas palustris TIE-1 cyanate hydratase YP_001991395.1 2595723 D 395960 CDS YP_001991396.1 192290791 6410069 complement(2596318..2596734) 1 NC_011004.1 KEGG: xau:Xaut_0833 hypothetical protein; hypothetical protein 2596734 6410069 Rpal_2407 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991396.1 2596318 R 395960 CDS YP_001991397.1 192290792 6410070 complement(2596713..2597195) 1 NC_011004.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 2597195 6410070 Rpal_2408 Rhodopseudomonas palustris TIE-1 flavodoxin FldA YP_001991397.1 2596713 R 395960 CDS YP_001991398.1 192290793 6410071 complement(2597399..2598205) 1 NC_011004.1 with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 2598205 hmuV 6410071 hmuV Rhodopseudomonas palustris TIE-1 hemin importer ATP-binding subunit YP_001991398.1 2597399 R 395960 CDS YP_001991399.1 192290794 6410072 complement(2598202..2599284) 1 NC_011004.1 PFAM: transport system permease protein; KEGG: nwi:Nwi_2323 ABC-type Fe3+-siderophore transport system permease component; iron ABC transporter permease 2599284 6410072 Rpal_2410 Rhodopseudomonas palustris TIE-1 iron ABC transporter permease YP_001991399.1 2598202 R 395960 CDS YP_001991400.1 192290795 6410073 complement(2599281..2600252) 1 NC_011004.1 PFAM: periplasmic binding protein; KEGG: bja:blr7077 hemin ABC transporter hemin-binding protein; hemin ABC transporter periplasmic protein 2600252 6410073 Rpal_2411 Rhodopseudomonas palustris TIE-1 hemin ABC transporter periplasmic protein YP_001991400.1 2599281 R 395960 CDS YP_001991401.1 192290796 6410074 complement(2600249..2600452) 1 NC_011004.1 KEGG: azc:AZC_1578 hypothetical protein; hypothetical protein 2600452 6410074 Rpal_2412 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991401.1 2600249 R 395960 CDS YP_001991402.1 192290797 6410075 2600786..2602246 1 NC_011004.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2602246 6410075 Rpal_2413 Rhodopseudomonas palustris TIE-1 coproporphyrinogen III oxidase YP_001991402.1 2600786 D 395960 CDS YP_001991403.1 192290798 6410076 2602234..2602905 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: hha:Hhal_0382 NAD dependent epimerase/dehydratase family; NAD-dependent epimerase/dehydratase 2602905 6410076 Rpal_2414 Rhodopseudomonas palustris TIE-1 NAD-dependent epimerase/dehydratase YP_001991403.1 2602234 D 395960 CDS YP_001991404.1 192290799 6410077 2603123..2605462 1 NC_011004.1 TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bja:bll7076 hemin receptor precursor; TonB-dependent heme/hemoglobin receptor family protein 2605462 6410077 Rpal_2415 Rhodopseudomonas palustris TIE-1 TonB-dependent heme/hemoglobin receptor family protein YP_001991404.1 2603123 D 395960 CDS YP_001991405.1 192290800 6410078 2605540..2605872 1 NC_011004.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bja:bll7075 hypothetical protein; antibiotic biosynthesis monooxygenase 2605872 6410078 Rpal_2416 Rhodopseudomonas palustris TIE-1 antibiotic biosynthesis monooxygenase YP_001991405.1 2605540 D 395960 CDS YP_001991406.1 192290801 6410079 2605889..2606425 1 NC_011004.1 PFAM: protein of unknown function DUF1008; KEGG: bja:bll7074 hypothetical protein; hypothetical protein 2606425 6410079 Rpal_2417 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991406.1 2605889 D 395960 CDS YP_001991407.1 192290802 6410080 2606418..2607215 1 NC_011004.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: bja:bll7073 biopolymer transport protein; tonB-system energizer ExbB 2607215 6410080 Rpal_2418 Rhodopseudomonas palustris TIE-1 tonB-system energizer ExbB YP_001991407.1 2606418 D 395960 CDS YP_001991408.1 192290803 6410081 2607221..2607658 1 NC_011004.1 TIGRFAM: TonB system transport protein ExbD; PFAM: biopolymer transport protein ExbD/TolR; KEGG: bja:bll7072 biopolymer transport protein; TonB system transport protein ExbD 2607658 6410081 Rpal_2419 Rhodopseudomonas palustris TIE-1 TonB system transport protein ExbD YP_001991408.1 2607221 D 395960 CDS YP_001991409.1 192290804 6410082 2607655..2608512 1 NC_011004.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: bja:bll7071 TonB protein; TonB family protein 2608512 6410082 Rpal_2420 Rhodopseudomonas palustris TIE-1 TonB family protein YP_001991409.1 2607655 D 395960 CDS YP_001991410.1 192290805 6410083 complement(2609090..2609311) 1 NC_011004.1 KEGG: bbt:BBta_2219 hypothetical protein; hypothetical protein 2609311 6410083 Rpal_2421 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991410.1 2609090 R 395960 CDS YP_001991411.1 192290806 6410084 complement(2609478..2610266) 1 NC_011004.1 PFAM: protein of unknown function DUF81; KEGG: bvi:Bcep1808_3205 protein of unknown function DUF81; hypothetical protein 2610266 6410084 Rpal_2422 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991411.1 2609478 R 395960 CDS YP_001991412.1 192290807 6410085 2610898..2611917 1 NC_011004.1 KEGG: bra:BRADO1425 conserved hypothetical protein; signal peptide; hypothetical protein 2611917 6410085 Rpal_2423 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991412.1 2610898 D 395960 CDS YP_001991413.1 192290808 6410086 2612047..2613432 1 NC_011004.1 KEGG: bbt:BBta_1105 membrane protein of unknown function; hypothetical protein 2613432 6410086 Rpal_2424 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991413.1 2612047 D 395960 CDS YP_001991414.1 192290809 6410087 2613437..2614228 1 NC_011004.1 KEGG: bbt:BBta_1104 hypothetical protein; hypothetical protein 2614228 6410087 Rpal_2425 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991414.1 2613437 D 395960 CDS YP_001991415.1 192290810 6410088 2614389..2614832 1 NC_011004.1 KEGG: nha:Nham_2144 hypothetical protein; hypothetical protein 2614832 6410088 Rpal_2426 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991415.1 2614389 D 395960 CDS YP_001991416.1 192290811 6410089 complement(2614905..2617028) 1 NC_011004.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bja:blr0516 two-component hybrid sensor and regulator; integral membrane sensor hybrid histidine kinase 2617028 6410089 Rpal_2427 Rhodopseudomonas palustris TIE-1 integral membrane sensor hybrid histidine kinase YP_001991416.1 2614905 R 395960 CDS YP_001991417.1 192290812 6410090 2617249..2617563 1 NC_011004.1 PFAM: cytochrome C class I; KEGG: bja:blr6128 cytochrome C552; cytochrome C class I 2617563 6410090 Rpal_2428 Rhodopseudomonas palustris TIE-1 cytochrome C class I YP_001991417.1 2617249 D 395960 CDS YP_001991418.1 192290813 6410091 2617657..2618805 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:blr0981 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2618805 6410091 Rpal_2429 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001991418.1 2617657 D 395960 CDS YP_001991419.1 192290814 6410092 2618945..2620099 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bra:BRADO6880 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2620099 6410092 Rpal_2430 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001991419.1 2618945 D 395960 CDS YP_001991420.1 192290815 6410093 2620339..2620989 1 NC_011004.1 PFAM: glutathione S-transferase domain; KEGG: bja:blr0983 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 2620989 6410093 Rpal_2431 Rhodopseudomonas palustris TIE-1 glutathione S-transferase domain-containing protein YP_001991420.1 2620339 D 395960 CDS YP_001991421.1 192290816 6410094 2621154..2621978 1 NC_011004.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bra:BRADO6878 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 2621978 6410094 Rpal_2432 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001991421.1 2621154 D 395960 CDS YP_001991422.1 192290817 6410095 2622099..2622965 1 NC_011004.1 PFAM: protein of unknown function DUF849; KEGG: bbt:BBta_0673 hypothetical protein; hypothetical protein 2622965 6410095 Rpal_2433 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991422.1 2622099 D 395960 CDS YP_001991423.1 192290818 6410096 2623131..2624735 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bbt:BBta_0674 fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 2624735 6410096 Rpal_2434 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001991423.1 2623131 D 395960 CDS YP_001991424.1 192290819 6410097 2624975..2626597 1 NC_011004.1 PFAM: carboxyl transferase; KEGG: bbt:BBta_0675 carboxylase; propionyl-CoA carboxylase 2626597 6410097 Rpal_2435 Rhodopseudomonas palustris TIE-1 propionyl-CoA carboxylase YP_001991424.1 2624975 D 395960 CDS YP_001991425.1 192290820 6410098 2626609..2628576 1 NC_011004.1 PFAM: biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: bja:blr0987 3-methylcrotonyl-CoA carboxylase alpha subunit; carbamoyl-phosphate synthase L chain ATP-binding 2628576 6410098 Rpal_2436 Rhodopseudomonas palustris TIE-1 carbamoyl-phosphate synthase L chain ATP-binding YP_001991425.1 2626609 D 395960 CDS YP_001991426.1 192290821 6410099 2628698..2629477 1 NC_011004.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2629477 6410099 Rpal_2437 Rhodopseudomonas palustris TIE-1 enoyl-CoA hydratase YP_001991426.1 2628698 D 395960 CDS YP_001991427.1 192290822 6410100 2629656..2631194 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_B0910 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; AMP-dependent synthetase and ligase 2631194 6410100 Rpal_2438 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001991427.1 2629656 D 395960 CDS YP_001991428.1 192290823 6410101 2631298..2632734 1 NC_011004.1 KEGG: bja:blr7140 hypothetical protein; hypothetical protein 2632734 6410101 Rpal_2439 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991428.1 2631298 D 395960 CDS YP_001991429.1 192290824 6410102 complement(2632830..2634098) 1 NC_011004.1 PFAM: beta-lactamase; KEGG: nha:Nham_2704 beta-lactamase; beta-lactamase 2634098 6410102 Rpal_2440 Rhodopseudomonas palustris TIE-1 beta-lactamase YP_001991429.1 2632830 R 395960 CDS YP_001991430.1 192290825 6410103 2634329..2635234 1 NC_011004.1 PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: bbt:BBta_2816 catechol 1,2-dioxygenase; intradiol ring-cleavage dioxygenase 2635234 6410103 Rpal_2441 Rhodopseudomonas palustris TIE-1 intradiol ring-cleavage dioxygenase YP_001991430.1 2634329 D 395960 CDS YP_001991431.1 192290826 6410104 2635253..2636098 1 NC_011004.1 PFAM: aldo/keto reductase; KEGG: bbt:BBta_2824 aldo/keto reductase; aldo/keto reductase 2636098 6410104 Rpal_2442 Rhodopseudomonas palustris TIE-1 aldo/keto reductase YP_001991431.1 2635253 D 395960 CDS YP_001991432.1 192290827 6410105 2636288..2637232 1 NC_011004.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bra:BRADO2478 conserved hypothetical protein; transmembrane protein; hypothetical protein 2637232 6410105 Rpal_2443 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991432.1 2636288 D 395960 CDS YP_001991433.1 192290828 6410106 2637435..2639456 1 NC_011004.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bja:blr2589 hypothetical protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2639456 6410106 Rpal_2444 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001991433.1 2637435 D 395960 CDS YP_001991434.1 192290829 6410107 2639703..2641133 1 NC_011004.1 PFAM: Aldehyde Dehydrogenase_; KEGG: bbt:BBta_2831 aldehyde dehydrogenase; aldehyde dehydrogenase 2641133 6410107 Rpal_2445 Rhodopseudomonas palustris TIE-1 aldehyde dehydrogenase YP_001991434.1 2639703 D 395960 CDS YP_001991435.1 192290830 6410108 2641242..2642456 1 NC_011004.1 PFAM: acyltransferase 3; KEGG: azc:AZC_3119 acyltransferase; acyltransferase 3 2642456 6410108 Rpal_2446 Rhodopseudomonas palustris TIE-1 acyltransferase 3 YP_001991435.1 2641242 D 395960 CDS YP_001991436.1 192290831 6410109 2642562..2642717 1 NC_011004.1 hypothetical protein 2642717 6410109 Rpal_2447 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991436.1 2642562 D 395960 CDS YP_001991437.1 192290832 6410110 2642783..2644489 1 NC_011004.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 2644489 6410110 Rpal_2448 Rhodopseudomonas palustris TIE-1 dihydroxy-acid dehydratase YP_001991437.1 2642783 D 395960 CDS YP_001991438.1 192290833 6410111 complement(2644494..2644772) 1 NC_011004.1 KEGG: gdi:GDI3488 hypothetical protein; hypothetical protein 2644772 6410111 Rpal_2449 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991438.1 2644494 R 395960 CDS YP_001991439.1 192290834 6410112 2645171..2646367 1 NC_011004.1 KEGG: nha:Nham_0017 hypothetical protein; hypothetical protein 2646367 6410112 Rpal_2450 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991439.1 2645171 D 395960 CDS YP_001991440.1 192290835 6410113 2646503..2646832 1 NC_011004.1 KEGG: bbt:BBta_1417 exported protein of unknown function; hypothetical protein 2646832 6410113 Rpal_2451 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991440.1 2646503 D 395960 CDS YP_001991441.1 192290836 6410114 complement(2646941..2647195) 1 NC_011004.1 hypothetical protein 2647195 6410114 Rpal_2452 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991441.1 2646941 R 395960 CDS YP_001991442.1 192290837 6410115 complement(2647381..2648130) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_4242 short-chain dehydrogenases/reductases (SDR) family protein; short-chain dehydrogenase/reductase SDR 2648130 6410115 Rpal_2453 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001991442.1 2647381 R 395960 CDS YP_001991443.1 192290838 6410116 2648243..2648557 1 NC_011004.1 PFAM: regulatory protein ArsR; KEGG: bbt:BBta_4243 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 2648557 6410116 Rpal_2454 Rhodopseudomonas palustris TIE-1 ArsR family transcriptional regulator YP_001991443.1 2648243 D 395960 CDS YP_001991444.1 192290839 6410117 2649251..2652010 1 NC_011004.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: mlo:mll1534 hypothetical protein; outer membrane autotransporter barrel domain-containing protein 2652010 6410117 Rpal_2455 Rhodopseudomonas palustris TIE-1 outer membrane autotransporter barrel domain-containing protein YP_001991444.1 2649251 D 395960 CDS YP_001991445.1 192290840 6410118 complement(2652068..2652754) 1 NC_011004.1 TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: bbt:BBta_4386 transporter (YecA family protein with sec-C motif)); yecA family protein 2652754 6410118 Rpal_2456 Rhodopseudomonas palustris TIE-1 yecA family protein YP_001991445.1 2652068 R 395960 CDS YP_001991446.1 192290841 6410119 complement(2653092..2654729) 1 NC_011004.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is co-regulated with symbiotic nitrogen fixation genes; chaperonin GroEL 2654729 groEL 6410119 groEL Rhodopseudomonas palustris TIE-1 chaperonin GroEL YP_001991446.1 2653092 R 395960 CDS YP_001991447.1 192290842 6410120 complement(2654895..2655209) 1 NC_011004.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 2655209 groES 6410120 groES Rhodopseudomonas palustris TIE-1 co-chaperonin GroES YP_001991447.1 2654895 R 395960 CDS YP_001991448.1 192290843 6410121 2655652..2655936 1 NC_011004.1 PFAM: Usg family protein; KEGG: nha:Nham_2592 hypothetical protein; Usg family protein 2655936 6410121 Rpal_2459 Rhodopseudomonas palustris TIE-1 Usg family protein YP_001991448.1 2655652 D 395960 CDS YP_001991449.1 192290844 6410122 complement(2656077..2657762) 1 NC_011004.1 KEGG: xfm:Xfasm12_1694 hypothetical protein; hypothetical protein 2657762 6410122 Rpal_2460 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991449.1 2656077 R 395960 CDS YP_001991450.1 192290845 6410123 complement(2658009..2659259) 1 NC_011004.1 PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: bja:blr5621 hypothetical protein; Na+ dependent nucleoside transporter domain-containing protein 2659259 6410123 Rpal_2461 Rhodopseudomonas palustris TIE-1 Na+ dependent nucleoside transporter domain-containing protein YP_001991450.1 2658009 R 395960 CDS YP_001991451.1 192290846 6410124 2659440..2660540 1 NC_011004.1 PFAM: ribulose bisphosphate carboxylase large chain; KEGG: rru:Rru_A1998 ribulose-bisphosphate carboxylase-like protein; rubisco-like protein; RuBisCO-like protein 2660540 6410124 Rpal_2462 Rhodopseudomonas palustris TIE-1 RuBisCO-like protein YP_001991451.1 2659440 D 395960 CDS YP_001991452.1 192290847 6410125 2660530..2661027 1 NC_011004.1 PFAM: cupin; KEGG: rru:Rru_A2000 hypothetical protein; cupin 2661027 6410125 Rpal_2463 Rhodopseudomonas palustris TIE-1 cupin YP_001991452.1 2660530 D 395960 CDS YP_001991453.1 192290848 6410126 complement(2661035..2661454) 1 NC_011004.1 KEGG: mma:MM_0269 hypothetical protein; hypothetical protein 2661454 6410126 Rpal_2464 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991453.1 2661035 R 395960 CDS YP_001991454.1 192290849 6410127 2661549..2662337 1 NC_011004.1 KEGG: ppf:Pput_2833 hypothetical protein; hypothetical protein 2662337 6410127 Rpal_2465 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991454.1 2661549 D 395960 CDS YP_001991455.1 192290850 6410128 complement(2662357..2663115) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_5277 oxidoreductase; short-chain dehydrogenase/reductase SDR 2663115 6410128 Rpal_2466 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001991455.1 2662357 R 395960 CDS YP_001991456.1 192290851 6410129 complement(2663148..2663648) 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_2393 hypothetical protein; N-acetyltransferase GCN5 2663648 6410129 Rpal_2467 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001991456.1 2663148 R 395960 CDS YP_001991457.1 192290852 6410130 complement(2663667..2664413) 1 NC_011004.1 PFAM: 20S proteasome A and B subunits; KEGG: bja:blr5617 hypothetical protein; 20S proteasome subunits A and B 2664413 6410130 Rpal_2468 Rhodopseudomonas palustris TIE-1 20S proteasome subunits A and B YP_001991457.1 2663667 R 395960 CDS YP_001991458.1 192290853 6410131 complement(2664627..2665454) 1 NC_011004.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bja:blr5614 hypothetical protein; transglutaminase domain-containing protein 2665454 6410131 Rpal_2469 Rhodopseudomonas palustris TIE-1 transglutaminase domain-containing protein YP_001991458.1 2664627 R 395960 CDS YP_001991459.1 192290854 6410132 complement(2665504..2666448) 1 NC_011004.1 PFAM: protein of unknown function DUF403; KEGG: bra:BRADO2904 hypothetical protein; hypothetical protein 2666448 6410132 Rpal_2470 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991459.1 2665504 R 395960 CDS YP_001991460.1 192290855 6410133 complement(2666595..2668013) 1 NC_011004.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: bbt:BBta_5273 hypothetical protein; hypothetical protein 2668013 6410133 Rpal_2471 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991460.1 2666595 R 395960 CDS YP_001991461.1 192290856 6410134 2668237..2668974 1 NC_011004.1 PFAM: molybdopterin binding domain; KEGG: bra:BRADO2908 conserved hypothetical protein; competence damage protein; molybdopterin binding domain; molybdopterin binding domain-containing protein 2668974 6410134 Rpal_2472 Rhodopseudomonas palustris TIE-1 molybdopterin binding domain-containing protein YP_001991461.1 2668237 D 395960 CDS YP_001991462.1 192290857 6410135 2669128..2669649 1 NC_011004.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 2669649 6410135 Rpal_2473 Rhodopseudomonas palustris TIE-1 xanthine-guanine phosphoribosyltransferase YP_001991462.1 2669128 D 395960 CDS YP_001991463.1 192290858 6410136 2669978..2670652 1 NC_011004.1 KEGG: nha:Nham_2589 hypothetical protein; hypothetical protein 2670652 6410136 Rpal_2474 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991463.1 2669978 D 395960 CDS YP_001991464.1 192290859 6410137 complement(2670847..2671869) 1 NC_011004.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2671869 6410137 Rpal_2475 Rhodopseudomonas palustris TIE-1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_001991464.1 2670847 R 395960 CDS YP_001991465.1 192290860 6410138 2672021..2672740 1 NC_011004.1 PFAM: glutathione S-transferase domain; KEGG: bja:bll5607 glutathione S-transferase; glutathione S-transferase domain-containing protein 2672740 6410138 Rpal_2476 Rhodopseudomonas palustris TIE-1 glutathione S-transferase domain-containing protein YP_001991465.1 2672021 D 395960 CDS YP_001991466.1 192290861 6410139 2673160..2673780 1 NC_011004.1 PFAM: DSBA oxidoreductase; KEGG: bja:bll5606 2-hydroxychromene-2-carboxylate isomerase; DSBA oxidoreductase 2673780 6410139 Rpal_2477 Rhodopseudomonas palustris TIE-1 DSBA oxidoreductase YP_001991466.1 2673160 D 395960 CDS YP_001991467.1 192290862 6410140 2673780..2674754 1 NC_011004.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_5263 oxidoreductase; alcohol dehydrogenase zinc-binding domain-containing protein 2674754 6410140 Rpal_2478 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase zinc-binding domain-containing protein YP_001991467.1 2673780 D 395960 CDS YP_001991468.1 192290863 6410141 2674846..2675313 1 NC_011004.1 PFAM: MaoC domain protein dehydratase; KEGG: nha:Nham_2554 MaoC-like dehydratase; MaoC domain-containing protein dehydratase 2675313 6410141 Rpal_2479 Rhodopseudomonas palustris TIE-1 MaoC domain-containing protein dehydratase YP_001991468.1 2674846 D 395960 CDS YP_001991469.1 192290864 6410142 2675332..2676249 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_3584 3-oxo-(acyl) acyl carrier protein reductase; short-chain dehydrogenase/reductase SDR 2676249 6410142 Rpal_2480 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001991469.1 2675332 D 395960 CDS YP_001991470.1 192290865 6410143 2676453..2677688 1 NC_011004.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nha:Nham_2553 HI0933-like protein; hypothetical protein 2677688 6410143 Rpal_2481 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991470.1 2676453 D 395960 CDS YP_001991471.1 192290866 6410144 complement(2677695..2678006) 1 NC_011004.1 KEGG: bja:bsr4462 hypothetical protein; hypothetical protein 2678006 6410144 Rpal_2482 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991471.1 2677695 R 395960 CDS YP_001991472.1 192290867 6410145 complement(2678018..2678674) 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: bcm:Bcenmc03_5533 transcriptional regulator, TetR family; TetR family transcriptional regulator 2678674 6410145 Rpal_2483 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001991472.1 2678018 R 395960 CDS YP_001991473.1 192290868 6410146 complement(2678778..2680595) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2552 ABC transporter; ABC transporter 2680595 6410146 Rpal_2484 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991473.1 2678778 R 395960 CDS YP_001991474.1 192290869 6410147 complement(2680606..2681082) 1 NC_011004.1 PFAM: protein of unknown function DUF188; KEGG: bja:bll3966 hypothetical protein; hypothetical protein 2681082 6410147 Rpal_2485 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991474.1 2680606 R 395960 CDS YP_001991475.1 192290870 6410148 2681186..2681986 1 NC_011004.1 KEGG: bbt:BBta_3593 hypothetical protein; hypothetical protein 2681986 6410148 Rpal_2486 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991475.1 2681186 D 395960 CDS YP_001991476.1 192290871 6410149 2682181..2683395 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: bbt:BBta_5091 branched-chain amino acid ABC transporter substrate-binding protein; extracellular ligand-binding receptor 2683395 6410149 Rpal_2487 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001991476.1 2682181 D 395960 CDS YP_001991477.1 192290872 6410150 complement(2683629..2686004) 1 NC_011004.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bja:bll3968 carbon monoxide dehydrogenase large chain; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 2686004 6410150 Rpal_2488 Rhodopseudomonas palustris TIE-1 molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001991477.1 2683629 R 395960 CDS YP_001991478.1 192290873 6410151 2686246..2687313 1 NC_011004.1 PFAM: Ppx/GppA phosphatase; KEGG: bja:blr3969 probable exopolyphosphatase; Ppx/GppA phosphatase 2687313 6410151 Rpal_2489 Rhodopseudomonas palustris TIE-1 Ppx/GppA phosphatase YP_001991478.1 2686246 D 395960 CDS YP_001991479.1 192290874 6410152 complement(2687340..2687915) 1 NC_011004.1 KEGG: pde:Pden_1824 hypothetical protein; hypothetical protein 2687915 6410152 Rpal_2490 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991479.1 2687340 R 395960 CDS YP_001991480.1 192290875 6410153 2688113..2688826 1 NC_011004.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: bra:BRADO3151 ribosomal RNA large subunit (23S) methyltransferase; ribosomal RNA methyltransferase RrmJ/FtsJ 2688826 6410153 Rpal_2491 Rhodopseudomonas palustris TIE-1 ribosomal RNA methyltransferase RrmJ/FtsJ YP_001991480.1 2688113 D 395960 CDS YP_001991481.1 192290876 6410154 2688989..2689168 1 NC_011004.1 hypothetical protein 2689168 6410154 Rpal_2492 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991481.1 2688989 D 395960 CDS YP_001991482.1 192290877 6410155 complement(2689185..2690660) 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_3608 multidrug efflux protein; major facilitator superfamily protein 2690660 6410155 Rpal_2493 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001991482.1 2689185 R 395960 CDS YP_001991483.1 192290878 6410156 2690852..2691100 1 NC_011004.1 KEGG: bbt:BBta_3609 exported protein of unknown function; hypothetical protein 2691100 6410156 Rpal_2494 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991483.1 2690852 D 395960 CDS YP_001991484.1 192290879 6410157 2691454..2692950 1 NC_011004.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 2692950 6410157 Rpal_2495 Rhodopseudomonas palustris TIE-1 inosine 5'-monophosphate dehydrogenase YP_001991484.1 2691454 D 395960 CDS YP_001991485.1 192290880 6410158 2693248..2694273 1 NC_011004.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: bbt:BBta_3611 NADP-dependent oxidoreductase; alcohol dehydrogenase zinc-binding domain-containing protein 2694273 6410158 Rpal_2496 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase zinc-binding domain-containing protein YP_001991485.1 2693248 D 395960 CDS YP_001991486.1 192290881 6410159 2694466..2695767 1 NC_011004.1 PFAM: Fmu (Sun) domain protein; KEGG: bra:BRADO3168 SUN-family protein, RNA methyltransferase; Fmu (Sun) domain-containing protein 2695767 6410159 Rpal_2497 Rhodopseudomonas palustris TIE-1 Fmu (Sun) domain-containing protein YP_001991486.1 2694466 D 395960 CDS YP_001991487.1 192290882 6410160 2696001..2697698 1 NC_011004.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2697698 guaA 6410160 guaA Rhodopseudomonas palustris TIE-1 GMP synthase YP_001991487.1 2696001 D 395960 CDS YP_001991488.1 192290883 6410161 2697845..2699236 1 NC_011004.1 hypothetical protein 2699236 6410161 Rpal_2499 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991488.1 2697845 D 395960 CDS YP_001991489.1 192290884 6410163 complement(2699712..2700620) 1 NC_011004.1 hypothetical protein 2700620 6410163 Rpal_2501 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991489.1 2699712 R 395960 CDS YP_001991490.1 192290885 6410164 complement(2701196..2702410) 1 NC_011004.1 KEGG: pau:PA14_46460 hypothetical protein; hypothetical protein 2702410 6410164 Rpal_2502 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991490.1 2701196 R 395960 CDS YP_001991491.1 192290886 6410165 complement(2702700..2703029) 1 NC_011004.1 KEGG: csa:Csal_0225 hypothetical protein; hypothetical protein 2703029 6410165 Rpal_2503 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991491.1 2702700 R 395960 CDS YP_001991492.1 192290887 6410166 complement(2703357..2704553) 1 NC_011004.1 PFAM: sodium/glutamate symporter; KEGG: oan:Oant_4810 sodium/glutamate symporter; sodium/glutamate symporter 2704553 6410166 Rpal_2504 Rhodopseudomonas palustris TIE-1 sodium/glutamate symporter YP_001991492.1 2703357 R 395960 CDS YP_001991493.1 192290888 6410167 complement(2704731..2705159) 1 NC_011004.1 PFAM: PilT protein domain protein; KEGG: xau:Xaut_4574 PilT protein domain protein; PilT protein domain-containing protein 2705159 6410167 Rpal_2505 Rhodopseudomonas palustris TIE-1 PilT protein domain-containing protein YP_001991493.1 2704731 R 395960 CDS YP_001991494.1 192290889 6410168 complement(2705159..2705458) 1 NC_011004.1 KEGG: mlo:msr5902 hypothetical protein; hypothetical protein 2705458 6410168 Rpal_2506 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991494.1 2705159 R 395960 CDS YP_001991495.1 192290890 6410169 complement(2705650..2706615) 1 NC_011004.1 PFAM: protein of unknown function UPF0074; hypothetical protein; KEGG: bja:blr7860 hypothetical protein; hypothetical protein 2706615 6410169 Rpal_2507 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991495.1 2705650 R 395960 CDS YP_001991496.1 192290891 6410170 2706714..2707358 1 NC_011004.1 PFAM: glutathione S-transferase domain; KEGG: bja:bll7859 glutathione S-transferase; glutathione S-transferase domain-containing protein 2707358 6410170 Rpal_2508 Rhodopseudomonas palustris TIE-1 glutathione S-transferase domain-containing protein YP_001991496.1 2706714 D 395960 CDS YP_001991497.1 192290892 6410171 2707587..2708030 1 NC_011004.1 KEGG: azo:azo1164 hypothetical protein; hypothetical protein 2708030 6410171 Rpal_2509 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991497.1 2707587 D 395960 CDS YP_001991498.1 192290893 6410172 2708105..2708665 1 NC_011004.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: bbt:BBta_7416 hypothetical protein; flavin reductase domain-containing protein 2708665 6410172 Rpal_2510 Rhodopseudomonas palustris TIE-1 flavin reductase domain-containing protein YP_001991498.1 2708105 D 395960 CDS YP_001991499.1 192290894 6410173 complement(2708713..2710515) 1 NC_011004.1 KEGG: sme:SMb20103 monooxygenase protein; monooxygenase protein 2710515 6410173 Rpal_2511 Rhodopseudomonas palustris TIE-1 monooxygenase protein YP_001991499.1 2708713 R 395960 CDS YP_001991500.1 192290895 6410174 complement(2710703..2711674) 1 NC_011004.1 hypothetical protein 2711674 6410174 Rpal_2512 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991500.1 2710703 R 395960 CDS YP_001991501.1 192290896 6410175 complement(2711788..2713266) 1 NC_011004.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2713266 6410175 Rpal_2513 Rhodopseudomonas palustris TIE-1 pyruvate kinase YP_001991501.1 2711788 R 395960 CDS YP_001991502.1 192290897 6410176 2713450..2713797 1 NC_011004.1 PFAM: arsenate reductase and related; KEGG: cak:Caul_2487 arsenate reductase and related; arsenate reductase-like protein 2713797 6410176 Rpal_2514 Rhodopseudomonas palustris TIE-1 arsenate reductase-like protein YP_001991502.1 2713450 D 395960 CDS YP_001991503.1 192290898 6410177 2713836..2714012 1 NC_011004.1 hypothetical protein 2714012 6410177 Rpal_2515 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991503.1 2713836 D 395960 CDS YP_001991504.1 192290899 6410178 2713993..2714640 1 NC_011004.1 KEGG: cch:Cag_0427 hypothetical protein; hypothetical protein 2714640 6410178 Rpal_2516 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991504.1 2713993 D 395960 CDS YP_001991505.1 192290900 6410179 2714811..2715581 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr4037 ABC transporter ATP-binding protein; ABC transporter 2715581 6410179 Rpal_2517 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991505.1 2714811 D 395960 CDS YP_001991506.1 192290901 6410180 2715574..2716320 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_3756 branched-chain amino acid transport system ATP-binding protein; ABC transporter 2716320 6410180 Rpal_2518 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991506.1 2715574 D 395960 CDS YP_001991507.1 192290902 6410181 2716359..2717234 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bra:BRADO3733 ABC transporter permease protein; branched-chain amino acid transport permease; inner-membrane translocator 2717234 6410181 Rpal_2519 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001991507.1 2716359 D 395960 CDS YP_001991508.1 192290903 6410182 2717236..2718207 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bbt:BBta_3759 membrane protein of unknown function with ABC transporter domain; inner-membrane translocator 2718207 6410182 Rpal_2520 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001991508.1 2717236 D 395960 CDS YP_001991509.1 192290904 6410183 complement(2718358..2720970) 1 NC_011004.1 KEGG: ang:An01g09380 hypothetical protein Pfam: Extensin_2 Troponin PROSITE: HEXAPEP_TRANSFERASES ALA_RICH ARG_RICH GLN_RICH GLU_RICH PRO_RICH; hypothetical protein 2720970 6410183 Rpal_2521 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991509.1 2718358 R 395960 CDS YP_001991510.1 192290905 6410184 2721547..2722191 1 NC_011004.1 PFAM: protein of unknown function DUF47; KEGG: bbt:BBta_3760 low-affinity phosphate transport accessory protein; hypothetical protein 2722191 6410184 Rpal_2522 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991510.1 2721547 D 395960 CDS YP_001991511.1 192290906 6410185 2722206..2723222 1 NC_011004.1 PFAM: phosphate transporter; KEGG: nwi:Nwi_2031 phosphate transporter; phosphate transporter 2723222 6410185 Rpal_2523 Rhodopseudomonas palustris TIE-1 phosphate transporter YP_001991511.1 2722206 D 395960 CDS YP_001991512.1 192290907 6410186 complement(2723240..2723551) 1 NC_011004.1 TIGRFAM: addiction module antidote protein, HigA family; KEGG: btr:Btr_0496 virulence-associated protein; XRE family transcriptional regulator 2723551 6410186 Rpal_2524 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001991512.1 2723240 R 395960 CDS YP_001991513.1 192290908 6410187 complement(2723594..2723869) 1 NC_011004.1 PFAM: plasmid maintenance system killer; KEGG: bhe:BH06630 hypothetical genomic island protein; plasmid maintenance system killer protein 2723869 6410187 Rpal_2525 Rhodopseudomonas palustris TIE-1 plasmid maintenance system killer protein YP_001991513.1 2723594 R 395960 CDS YP_001991514.1 192290909 6410188 complement(2723958..2724272) 1 NC_011004.1 PFAM: small multidrug resistance protein; KEGG: nha:Nham_1679 small multidrug resistance protein; small multidrug resistance protein 2724272 6410188 Rpal_2526 Rhodopseudomonas palustris TIE-1 small multidrug resistance protein YP_001991514.1 2723958 R 395960 CDS YP_001991515.1 192290910 6410189 2724503..2726128 1 NC_011004.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: nwi:Nwi_2027 peptide chain release factor 3; peptide chain release factor 3 2726128 6410189 Rpal_2527 Rhodopseudomonas palustris TIE-1 peptide chain release factor 3 YP_001991515.1 2724503 D 395960 CDS YP_001991516.1 192290911 6410190 2727164..2730139 1 NC_011004.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mac:MA0188 hypothetical protein; hypothetical protein 2730139 6410190 Rpal_2528 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991516.1 2727164 D 395960 CDS YP_001991517.1 192290912 6410191 complement(2730323..2730463) 1 NC_011004.1 hypothetical protein 2730463 6410191 Rpal_2529 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991517.1 2730323 R 395960 CDS YP_001991518.1 192290913 6410192 complement(2730460..2732286) 1 NC_011004.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1065 TPR repeat protein; hypothetical protein 2732286 6410192 Rpal_2530 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991518.1 2730460 R 395960 CDS YP_001991519.1 192290914 6410193 complement(2732559..2733017) 1 NC_011004.1 KEGG: fal:FRAAL3046 hypothetical protein; hypothetical protein 2733017 6410193 Rpal_2531 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991519.1 2732559 R 395960 CDS YP_001991520.1 192290915 6410194 2733298..2734626 1 NC_011004.1 KEGG: nha:Nham_2170 tetratricopeptide TPR_2; hypothetical protein 2734626 6410194 Rpal_2532 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991520.1 2733298 D 395960 CDS YP_001991521.1 192290916 6410195 2734638..2736359 1 NC_011004.1 KEGG: nwi:Nwi_1759 hypothetical protein; hypothetical protein 2736359 6410195 Rpal_2533 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991521.1 2734638 D 395960 CDS YP_001991522.1 192290917 6410196 2736495..2738789 1 NC_011004.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: nha:Nham_2169 adenylate/guanylate cyclase; adenylate/guanylate cyclase with Chase sensor 2738789 6410196 Rpal_2534 Rhodopseudomonas palustris TIE-1 adenylate/guanylate cyclase with Chase sensor YP_001991522.1 2736495 D 395960 CDS YP_001991523.1 192290918 6410197 complement(2738804..2740222) 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: ccr:CC_0759 sensory box histidine kinase FixL; multi-sensor signal transduction histidine kinase 2740222 6410197 Rpal_2535 Rhodopseudomonas palustris TIE-1 multi-sensor signal transduction histidine kinase YP_001991523.1 2738804 R 395960 CDS YP_001991524.1 192290919 6410198 complement(2740416..2741012) 1 NC_011004.1 KEGG: xau:Xaut_4923 hypothetical protein; hypothetical protein 2741012 6410198 Rpal_2536 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991524.1 2740416 R 395960 CDS YP_001991525.1 192290920 6410199 2741232..2741927 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: bja:blr4685 transcriptional regulatory protein; TetR family transcriptional regulator 2741927 6410199 Rpal_2537 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001991525.1 2741232 D 395960 CDS YP_001991526.1 192290921 6410200 2742400..2743056 1 NC_011004.1 KEGG: bja:blr4686 hypothetical protein; hypothetical protein 2743056 6410200 Rpal_2538 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991526.1 2742400 D 395960 CDS YP_001991527.1 192290922 6410201 2743053..2743529 1 NC_011004.1 KEGG: mlo:mlr2406 hypothetical protein; hypothetical protein 2743529 6410201 Rpal_2539 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991527.1 2743053 D 395960 CDS YP_001991528.1 192290923 6410202 2743908..2746586 1 NC_011004.1 structural flagella protein; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellin 2746586 6410202 Rpal_2540 Rhodopseudomonas palustris TIE-1 flagellin YP_001991528.1 2743908 D 395960 CDS YP_001991529.1 192290924 6410203 2746655..2747209 1 NC_011004.1 KEGG: bra:BRADO7004 flagellar biosynthesis repressor FlbT; hypothetical protein 2747209 6410203 Rpal_2541 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991529.1 2746655 D 395960 CDS YP_001991530.1 192290925 6410204 2747338..2748084 1 NC_011004.1 PFAM: regulatory protein LuxR; KEGG: bra:BRADO1260 transcriptional regulatory protein, LuxR family; LuxR family transcriptional regulator 2748084 6410204 Rpal_2542 Rhodopseudomonas palustris TIE-1 LuxR family transcriptional regulator YP_001991530.1 2747338 D 395960 CDS YP_001991531.1 192290926 6410205 2748358..2748963 1 NC_011004.1 PFAM: regulatory protein LuxR; KEGG: azo:azo1777 hypothetical LuxR-family transcriptional regulator; LuxR family transcriptional regulator 2748963 6410205 Rpal_2543 Rhodopseudomonas palustris TIE-1 LuxR family transcriptional regulator YP_001991531.1 2748358 D 395960 CDS YP_001991532.1 192290927 6410206 complement(2748994..2749986) 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: xau:Xaut_4663 helix-turn-helix-domain containing protein AraC type; AraC family transcriptional regulator 2749986 6410206 Rpal_2544 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001991532.1 2748994 R 395960 CDS YP_001991533.1 192290928 6410207 2750140..2751831 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bcm:Bcenmc03_6706 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2751831 6410207 Rpal_2545 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001991533.1 2750140 D 395960 CDS YP_001991534.1 192290929 6410208 2751850..2752617 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xau:Xaut_4664 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2752617 6410208 Rpal_2546 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001991534.1 2751850 D 395960 CDS YP_001991535.1 192290930 6410209 2752676..2753863 1 NC_011004.1 KEGG: xau:Xaut_4665 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 2753863 6410209 Rpal_2547 Rhodopseudomonas palustris TIE-1 acetyl-CoA acetyltransferase YP_001991535.1 2752676 D 395960 CDS YP_001991536.1 192290931 6410210 2753871..2754998 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rle:pRL100302 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2754998 6410210 Rpal_2548 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001991536.1 2753871 D 395960 CDS YP_001991537.1 192290932 6410211 2755364..2755912 1 NC_011004.1 PFAM: cytochrome B561; KEGG: cvi:CV_3278 probable cytochrome b561; cytochrome B561 2755912 6410211 Rpal_2549 Rhodopseudomonas palustris TIE-1 cytochrome B561 YP_001991537.1 2755364 D 395960 CDS YP_001991538.1 192290933 6410212 complement(2755981..2758308) 1 NC_011004.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cff:CFF8240_1206 TonB-dependent receptor; TonB-dependent receptor plug 2758308 6410212 Rpal_2550 Rhodopseudomonas palustris TIE-1 TonB-dependent receptor plug YP_001991538.1 2755981 R 395960 CDS YP_001991539.1 192290934 6410213 2758637..2759722 1 NC_011004.1 PFAM: periplasmic binding protein; KEGG: rle:RL2022 solute-binding component of cationic transporter; periplasmic binding protein 2759722 6410213 Rpal_2551 Rhodopseudomonas palustris TIE-1 periplasmic binding protein YP_001991539.1 2758637 D 395960 CDS YP_001991540.1 192290935 6410214 2759719..2760810 1 NC_011004.1 PFAM: transport system permease protein; KEGG: pde:Pden_1169 transport system permease protein; transport system permease 2760810 6410214 Rpal_2552 Rhodopseudomonas palustris TIE-1 transport system permease YP_001991540.1 2759719 D 395960 CDS YP_001991541.1 192290936 6410215 2760807..2761571 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pde:Pden_1170 ABC transporter; ABC transporter 2761571 6410215 Rpal_2553 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991541.1 2760807 D 395960 CDS YP_001991542.1 192290937 6410216 complement(2761573..2762202) 1 NC_011004.1 KEGG: rle:RL2017 hypothetical protein; hypothetical protein 2762202 6410216 Rpal_2554 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991542.1 2761573 R 395960 CDS YP_001991543.1 192290938 6410217 complement(2762199..2762804) 1 NC_011004.1 KEGG: rha:RHA1_ro03621 hypothetical protein; hypothetical protein 2762804 6410217 Rpal_2555 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991543.1 2762199 R 395960 CDS YP_001991544.1 192290939 6410218 complement(2762818..2763318) 1 NC_011004.1 KEGG: rle:RL2016 hypothetical protein; hypothetical protein 2763318 6410218 Rpal_2556 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991544.1 2762818 R 395960 CDS YP_001991545.1 192290940 6410219 2763945..2764385 1 NC_011004.1 PFAM: cytochrome C prime; KEGG: azc:AZC_1821 cytochrome C precursor; cytochrome C prime 2764385 6410219 Rpal_2557 Rhodopseudomonas palustris TIE-1 cytochrome C prime YP_001991545.1 2763945 D 395960 CDS YP_001991546.1 192290941 6410220 2764389..2765063 1 NC_011004.1 PFAM: cytochrome B561; KEGG: maq:Maqu_0326 cytochrome b561; cytochrome B561 2765063 6410220 Rpal_2558 Rhodopseudomonas palustris TIE-1 cytochrome B561 YP_001991546.1 2764389 D 395960 CDS YP_001991547.1 192290942 6410221 complement(2765095..2765880) 1 NC_011004.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2765880 6410221 Rpal_2559 Rhodopseudomonas palustris TIE-1 enoyl-CoA hydratase YP_001991547.1 2765095 R 395960 CDS YP_001991548.1 192290943 6410222 complement(2765905..2766699) 1 NC_011004.1 PFAM: coenzyme A transferase; KEGG: rxy:Rxyl_1583 glutaconate CoA-transferase; coenzyme A transferase 2766699 6410222 Rpal_2560 Rhodopseudomonas palustris TIE-1 coenzyme A transferase YP_001991548.1 2765905 R 395960 CDS YP_001991549.1 192290944 6410223 complement(2766696..2767691) 1 NC_011004.1 PFAM: coenzyme A transferase; KEGG: afu:AF1199 glutaconate CoA-transferase, subunit A; coenzyme A transferase 2767691 6410223 Rpal_2561 Rhodopseudomonas palustris TIE-1 coenzyme A transferase YP_001991549.1 2766696 R 395960 CDS YP_001991550.1 192290945 6410224 complement(2767819..2768811) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: pna:Pnap_2117 uncharacterized protein UPF0065; hypothetical protein 2768811 6410224 Rpal_2562 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991550.1 2767819 R 395960 CDS YP_001991551.1 192290946 6410225 complement(2768889..2770391) 1 NC_011004.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: rme:Rmet_3964 protein of unknown function DUF112, transmembrane; hypothetical protein 2770391 6410225 Rpal_2563 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991551.1 2768889 R 395960 CDS YP_001991552.1 192290947 6410226 complement(2770391..2770867) 1 NC_011004.1 PFAM: protein of unknown function DUF1468; KEGG: rso:RSc0794 probable transmembrane protein; hypothetical protein 2770867 6410226 Rpal_2564 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991552.1 2770391 R 395960 CDS YP_001991553.1 192290948 6410227 2770951..2771478 1 NC_011004.1 hypothetical protein 2771478 6410227 Rpal_2565 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991553.1 2770951 D 395960 CDS YP_001991554.1 192290949 6410228 2771582..2772475 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_4287 transcriptional regulatory protein, LysR family; LysR family transcriptional regulator 2772475 6410228 Rpal_2566 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001991554.1 2771582 D 395960 CDS YP_001991555.1 192290950 6410229 2772643..2773917 1 NC_011004.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: bra:BRADO3420 4-aminobutyrate aminotransferase ((S)-3-amino-2-methylpropionate transaminase); 4-aminobutyrate aminotransferase 2773917 6410229 Rpal_2567 Rhodopseudomonas palustris TIE-1 4-aminobutyrate aminotransferase YP_001991555.1 2772643 D 395960 CDS YP_001991556.1 192290951 6410230 2773946..2775406 1 NC_011004.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bra:BRADO0028 succinate-semialdehyde dehydrogenase [NADP+] (SSDH); succinate-semialdehyde dehydrogenase 2775406 6410230 Rpal_2568 Rhodopseudomonas palustris TIE-1 succinate-semialdehyde dehydrogenase YP_001991556.1 2773946 D 395960 CDS YP_001991557.1 192290952 6410231 2775456..2776754 1 NC_011004.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 2776754 6410231 Rpal_2569 Rhodopseudomonas palustris TIE-1 acetylornithine deacetylase YP_001991557.1 2775456 D 395960 CDS YP_001991558.1 192290953 6410232 2776754..2778343 1 NC_011004.1 thiamine-pyrophosphate requiring enzyme; hypothetical protein 2778343 6410232 Rpal_2570 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991558.1 2776754 D 395960 CDS YP_001991559.1 192290954 6410233 2778422..2780011 1 NC_011004.1 PFAM: extracellular solute-binding protein family 5; KEGG: pol:Bpro_0426 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 2780011 6410233 Rpal_2571 Rhodopseudomonas palustris TIE-1 family 5 extracellular solute-binding protein YP_001991559.1 2778422 D 395960 CDS YP_001991560.1 192290955 6410234 2780008..2781030 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: pol:Bpro_0425 ABC transporter inner membrane protein; ABC transporter inner membrane protein 2781030 6410234 Rpal_2572 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001991560.1 2780008 D 395960 CDS YP_001991561.1 192290956 6410235 2781043..2781882 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: mrd:Mrad2831_3219 ABC transporter inner membrane protein; ABC transporter inner membrane protein 2781882 6410235 Rpal_2573 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001991561.1 2781043 D 395960 CDS YP_001991562.1 192290957 6410236 2781879..2783537 1 NC_011004.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_0751 ABC transporter; ABC transporter 2783537 6410236 Rpal_2574 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991562.1 2781879 D 395960 CDS YP_001991563.1 192290958 6410237 2783612..2785189 1 NC_011004.1 KEGG: bbt:BBta_7627 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2785189 6410237 Rpal_2575 Rhodopseudomonas palustris TIE-1 gamma-glutamyltransferase YP_001991563.1 2783612 D 395960 CDS YP_001991564.1 192290959 6410238 2785561..2786637 1 NC_011004.1 PFAM: Rare lipoprotein A; nuclease (SNase domain protein); KEGG: bja:blr0372 succinoglycan biosynthesis protein; nuclease 2786637 6410238 Rpal_2576 Rhodopseudomonas palustris TIE-1 nuclease YP_001991564.1 2785561 D 395960 CDS YP_001991565.1 192290960 6410239 complement(2786836..2788932) 1 NC_011004.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: eba:ebA609 cation transport ATPase; ATPase P 2788932 6410239 Rpal_2577 Rhodopseudomonas palustris TIE-1 ATPase P YP_001991565.1 2786836 R 395960 CDS YP_001991566.1 192290961 6410240 complement(2788929..2789267) 1 NC_011004.1 KEGG: shw:Sputw3181_0749 hypothetical protein; hypothetical protein 2789267 6410240 Rpal_2578 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991566.1 2788929 R 395960 CDS YP_001991567.1 192290962 6410241 complement(2789260..2789601) 1 NC_011004.1 KEGG: shw:Sputw3181_0748 hypothetical protein; hypothetical protein 2789601 6410241 Rpal_2579 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991567.1 2789260 R 395960 CDS YP_001991568.1 192290963 6410242 complement(2789588..2789911) 1 NC_011004.1 KEGG: tcr:507957.200 mucin-associated surface protein (MASP), Pfam: Prosystemin PROSITE: ALA_RICH; hypothetical protein 2789911 6410242 Rpal_2580 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991568.1 2789588 R 395960 CDS YP_001991569.1 192290964 6410243 complement(2789929..2790261) 1 NC_011004.1 KEGG: eba:ebB16 hypothetical protein; hypothetical protein 2790261 6410243 Rpal_2581 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991569.1 2789929 R 395960 CDS YP_001991570.1 192290965 6410244 complement(2790269..2790769) 1 NC_011004.1 KEGG: eba:ebA616 hypothetical protein; hypothetical protein 2790769 6410244 Rpal_2582 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991570.1 2790269 R 395960 CDS YP_001991571.1 192290966 6410245 2791266..2791757 1 NC_011004.1 PFAM: ferric-uptake regulator; KEGG: bra:BRADO0064 ferric uptake regulation protein, FUR family; Fur family ferric uptake regulator 2791757 6410245 Rpal_2583 Rhodopseudomonas palustris TIE-1 Fur family ferric uptake regulator YP_001991571.1 2791266 D 395960 CDS YP_001991572.1 192290967 6410246 complement(2791883..2793256) 1 NC_011004.1 PFAM: FAD dependent oxidoreductase; KEGG: msm:MSMEG_0481 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2793256 6410246 Rpal_2584 Rhodopseudomonas palustris TIE-1 FAD dependent oxidoreductase YP_001991572.1 2791883 R 395960 CDS YP_001991573.1 192290968 6410247 complement(2793311..2794990) 1 NC_011004.1 PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: mpt:Mpe_A3651 dihydroxy-acid dehydratase; Dihydroxy-acid dehydratase 2794990 6410247 Rpal_2585 Rhodopseudomonas palustris TIE-1 Dihydroxy-acid dehydratase YP_001991573.1 2793311 R 395960 CDS YP_001991574.1 192290969 6410248 complement(2795057..2796364) 1 NC_011004.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: msm:MSMEG_0483 shikimate transporter; major facilitator superfamily protein 2796364 6410248 Rpal_2586 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001991574.1 2795057 R 395960 CDS YP_001991575.1 192290970 6410249 2796773..2797450 1 NC_011004.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rru:Rru_A3003 transcriptional regulator, GntR family; GntR family transcriptional regulator 2797450 6410249 Rpal_2587 Rhodopseudomonas palustris TIE-1 GntR family transcriptional regulator YP_001991575.1 2796773 D 395960 CDS YP_001991576.1 192290971 6410250 complement(2797489..2798109) 1 NC_011004.1 KEGG: eca:ECA3961 hypothetical protein; hypothetical protein 2798109 6410250 Rpal_2588 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991576.1 2797489 R 395960 CDS YP_001991577.1 192290972 6410251 complement(2798110..2799120) 1 NC_011004.1 KEGG: ang:An18g00710 hypothetical protein Pfam: MTS; hypothetical protein 2799120 6410251 Rpal_2589 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991577.1 2798110 R 395960 CDS YP_001991578.1 192290973 6410252 complement(2799365..2800543) 1 NC_011004.1 KEGG: dar:Daro_1003 40-residue YVTN beta-propeller repeat; hypothetical protein 2800543 6410252 Rpal_2590 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991578.1 2799365 R 395960 CDS YP_001991579.1 192290974 6410253 complement(2800585..2801976) 1 NC_011004.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0793 nitrogenase; nitrogenase 2801976 6410253 Rpal_2591 Rhodopseudomonas palustris TIE-1 nitrogenase YP_001991579.1 2800585 R 395960 CDS YP_001991580.1 192290975 6410254 complement(2801976..2803511) 1 NC_011004.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0794 nitrogenase; nitrogenase 2803511 6410254 Rpal_2592 Rhodopseudomonas palustris TIE-1 nitrogenase YP_001991580.1 2801976 R 395960 CDS YP_001991581.1 192290976 6410255 complement(2803736..2804929) 1 NC_011004.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: bbt:BBta_2509 O-acetylhomoserine sulfhydrylase; Cys/Met metabolism pyridoxal-phosphate-dependent protein 2804929 6410255 Rpal_2593 Rhodopseudomonas palustris TIE-1 Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_001991581.1 2803736 R 395960 CDS YP_001991582.1 192290977 6410256 2805221..2806522 1 NC_011004.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: rru:Rru_A0774 O-acetylhomoserine/O-acetylserine sulfhydrylase; O-acetylhomoserine aminocarboxypropyltransferase 2806522 6410256 Rpal_2594 Rhodopseudomonas palustris TIE-1 O-acetylhomoserine aminocarboxypropyltransferase YP_001991582.1 2805221 D 395960 CDS YP_001991583.1 192290978 6410257 complement(2806687..2807175) 1 NC_011004.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bbt:BBta_4847 transcriptional regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 2807175 6410257 Rpal_2595 Rhodopseudomonas palustris TIE-1 AsnC family transcriptional regulator YP_001991583.1 2806687 R 395960 CDS YP_001991584.1 192290979 6410258 complement(2807457..2807954) 1 NC_011004.1 PFAM: Acireductone dioxygenase ARD; cupin; KEGG: dac:Daci_3175 acireductone dioxygenase ARD; Acireductone dioxygenase ARD 2807954 6410258 Rpal_2596 Rhodopseudomonas palustris TIE-1 Acireductone dioxygenase ARD YP_001991584.1 2807457 R 395960 CDS YP_001991585.1 192290980 6410259 complement(2807997..2808866) 1 NC_011004.1 KEGG: rru:Rru_A0795 nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein; nitrogenase iron protein 2808866 6410259 Rpal_2597 Rhodopseudomonas palustris TIE-1 nitrogenase iron protein YP_001991585.1 2807997 R 395960 CDS YP_001991586.1 192290981 6410260 complement(2808912..2809835) 1 NC_011004.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rru:Rru_A0796 radical SAM; radical SAM domain-containing protein 2809835 6410260 Rpal_2598 Rhodopseudomonas palustris TIE-1 radical SAM domain-containing protein YP_001991586.1 2808912 R 395960 CDS YP_001991587.1 192290982 6410261 complement(2809832..2810215) 1 NC_011004.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: cbe:Cbei_2005 nitrogenase cofactor biosynthesis protein NifB; dinitrogenase iron-molybdenum cofactor biosynthesis protein 2810215 6410261 Rpal_2599 Rhodopseudomonas palustris TIE-1 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_001991587.1 2809832 R 395960 CDS YP_001991588.1 192290983 6410262 2810685..2812082 1 NC_011004.1 PFAM: CBS domain containing protein; pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: spe:Spro_1627 pyridoxal-5'-phosphate-dependent protein beta subunit; pyridoxal-5'-phosphate-dependent protein beta subunit 2812082 6410262 Rpal_2600 Rhodopseudomonas palustris TIE-1 pyridoxal-5'-phosphate-dependent protein beta subunit YP_001991588.1 2810685 D 395960 CDS YP_001991589.1 192290984 6410263 2812084..2813256 1 NC_011004.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rru:Rru_A0786 cystathionine gamma-synthase; cystathionine gamma-synthase 2813256 6410263 Rpal_2601 Rhodopseudomonas palustris TIE-1 cystathionine gamma-synthase YP_001991589.1 2812084 D 395960 CDS YP_001991590.1 192290985 6410264 complement(2813358..2814404) 1 NC_011004.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: bbt:BBta_2508 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase 2814404 6410264 Rpal_2602 Rhodopseudomonas palustris TIE-1 2OG-Fe(II) oxygenase YP_001991590.1 2813358 R 395960 CDS YP_001991591.1 192290986 6410265 2814897..2815679 1 NC_011004.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: oan:Oant_3792 lipoprotein, YaeC family; lipoprotein 2815679 6410265 Rpal_2603 Rhodopseudomonas palustris TIE-1 lipoprotein YP_001991591.1 2814897 D 395960 CDS YP_001991592.1 192290987 6410266 2815757..2816821 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: oan:Oant_3791 ABC transporter; ABC transporter 2816821 6410266 Rpal_2604 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991592.1 2815757 D 395960 CDS YP_001991593.1 192290988 6410267 2816775..2817476 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: oan:Oant_3790 ABC transporter inner membrane protein; ABC transporter inner membrane protein 2817476 6410267 Rpal_2605 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001991593.1 2816775 D 395960 CDS YP_001991594.1 192290989 6410268 2817512..2818825 1 NC_011004.1 KEGG: rru:Rru_A0774 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-acetylhomoserine/O-acetylserine sulfhydrylase 2818825 6410268 Rpal_2606 Rhodopseudomonas palustris TIE-1 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_001991594.1 2817512 D 395960 CDS YP_001991595.1 192290990 6410269 2818854..2820359 1 NC_011004.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0794 nitrogenase; nitrogenase 2820359 6410269 Rpal_2607 Rhodopseudomonas palustris TIE-1 nitrogenase YP_001991595.1 2818854 D 395960 CDS YP_001991596.1 192290991 6410270 2820372..2821751 1 NC_011004.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0793 nitrogenase; nitrogenase 2821751 6410270 Rpal_2608 Rhodopseudomonas palustris TIE-1 nitrogenase YP_001991596.1 2820372 D 395960 CDS YP_001991597.1 192290992 6410271 complement(2821768..2822868) 1 NC_011004.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: bja:blr5707 threonine aldolase; threonine aldolase 2822868 6410271 Rpal_2609 Rhodopseudomonas palustris TIE-1 threonine aldolase YP_001991597.1 2821768 R 395960 CDS YP_001991598.1 192290993 6410272 2823169..2823420 1 NC_011004.1 KEGG: atc:AGR_L_1715 hypothetical protein; hypothetical protein 2823420 6410272 Rpal_2610 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991598.1 2823169 D 395960 CDS YP_001991599.1 192290994 6410273 complement(2823540..2824643) 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bja:bll3558 two-component hybrid sensor and regulator; integral membrane sensor signal transduction histidine kinase 2824643 6410273 Rpal_2611 Rhodopseudomonas palustris TIE-1 integral membrane sensor signal transduction histidine kinase YP_001991599.1 2823540 R 395960 CDS YP_001991600.1 192290995 6410274 complement(2824640..2825326) 1 NC_011004.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:bll3559 two-component response regulator; winged helix family two component transcriptional regulator 2825326 6410274 Rpal_2612 Rhodopseudomonas palustris TIE-1 winged helix family two component transcriptional regulator YP_001991600.1 2824640 R 395960 CDS YP_001991601.1 192290996 6410275 complement(2825400..2825726) 1 NC_011004.1 KEGG: rle:RL3151 hypothetical protein; hypothetical protein 2825726 6410275 Rpal_2613 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991601.1 2825400 R 395960 CDS YP_001991602.1 192290997 6410276 2826038..2827255 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gsu:GSU2697 multidrug resistance protein; RND family efflux transporter MFP subunit 2827255 6410276 Rpal_2614 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001991602.1 2826038 D 395960 CDS YP_001991603.1 192290998 6410278 2830651..2832156 1 NC_011004.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: xau:Xaut_2451 RND efflux system, outer membrane lipoprotein, NodT family; NodT family RND efflux system outer membrane lipoprotein 2832156 6410278 Rpal_2616 Rhodopseudomonas palustris TIE-1 NodT family RND efflux system outer membrane lipoprotein YP_001991603.1 2830651 D 395960 CDS YP_001991604.1 192290999 6410279 2832329..2833936 1 NC_011004.1 KEGG: bbt:BBta_7373 membrane protein of unknown function; hypothetical protein 2833936 6410279 Rpal_2617 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991604.1 2832329 D 395960 CDS YP_001991605.1 192291000 6410281 complement(2834779..2835081) 1 NC_011004.1 KEGG: nwi:Nwi_2293 hypothetical protein; hypothetical protein 2835081 6410281 Rpal_2619 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991605.1 2834779 R 395960 CDS YP_001991606.1 192291001 6410282 complement(2835196..2837508) 1 NC_011004.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nwi:Nwi_2294 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2837508 6410282 Rpal_2620 Rhodopseudomonas palustris TIE-1 TonB-dependent siderophore receptor YP_001991606.1 2835196 R 395960 CDS YP_001991607.1 192291002 6410283 complement(2837659..2838156) 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nwi:Nwi_2295 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2838156 6410283 Rpal_2621 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001991607.1 2837659 R 395960 CDS YP_001991608.1 192291003 6410284 complement(2838170..2840401) 1 NC_011004.1 PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: nwi:Nwi_2296 TonB-dependent receptor; TonB-dependent receptor plug 2840401 6410284 Rpal_2622 Rhodopseudomonas palustris TIE-1 TonB-dependent receptor plug YP_001991608.1 2838170 R 395960 CDS YP_001991609.1 192291004 6410285 complement(2840500..2841489) 1 NC_011004.1 PFAM: FecR protein; KEGG: nwi:Nwi_2297 FecR protein; anti-FecI sigma factor FecR 2841489 6410285 Rpal_2623 Rhodopseudomonas palustris TIE-1 anti-FecI sigma factor FecR YP_001991609.1 2840500 R 395960 CDS YP_001991610.1 192291005 6410286 complement(2841611..2842369) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rsh:Rsph17029_3961 ABC transporter; ABC transporter 2842369 6410286 Rpal_2624 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991610.1 2841611 R 395960 CDS YP_001991611.1 192291006 6410287 complement(2842366..2843316) 1 NC_011004.1 PFAM: transport system permease protein; KEGG: atc:AGR_C_4491 ferrichrome ABC transporter (permease) homolog; transport system permease 2843316 6410287 Rpal_2625 Rhodopseudomonas palustris TIE-1 transport system permease YP_001991611.1 2842366 R 395960 CDS YP_001991612.1 192291007 6410288 complement(2843309..2844286) 1 NC_011004.1 PFAM: transport system permease protein; KEGG: rsp:RSP_3220 ABC ferric siderophore transporter inner membrane subunit; transport system permease 2844286 6410288 Rpal_2626 Rhodopseudomonas palustris TIE-1 transport system permease YP_001991612.1 2843309 R 395960 CDS YP_001991613.1 192291008 6410289 complement(2844283..2845188) 1 NC_011004.1 PFAM: periplasmic binding protein; KEGG: rsp:RSP_3079 ABC Fe+3 siderophore transporter periplasmic substrate-binding protein; periplasmic binding protein 2845188 6410289 Rpal_2627 Rhodopseudomonas palustris TIE-1 periplasmic binding protein YP_001991613.1 2844283 R 395960 CDS YP_001991614.1 192291009 6410290 complement(2845198..2846067) 1 NC_011004.1 PFAM: xylose isomerase; KEGG: nwi:Nwi_2298 xylose isomerase-like TIM barrel; xylose isomerase 2846067 6410290 Rpal_2628 Rhodopseudomonas palustris TIE-1 xylose isomerase YP_001991614.1 2845198 R 395960 CDS YP_001991615.1 192291010 6410291 complement(2846067..2847377) 1 NC_011004.1 KEGG: nwi:Nwi_2299 hypothetical protein; hypothetical protein 2847377 6410291 Rpal_2629 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991615.1 2846067 R 395960 CDS YP_001991616.1 192291011 6410292 complement(2847374..2848639) 1 NC_011004.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 2848639 6410292 Rpal_2630 Rhodopseudomonas palustris TIE-1 acyl-CoA synthetase YP_001991616.1 2847374 R 395960 CDS YP_001991617.1 192291012 6410293 complement(2848636..2850369) 1 NC_011004.1 PFAM: IucA/IucC family protein; KEGG: nwi:Nwi_2301 siderophore synthetase component; IucA/IucC family protein 2850369 6410293 Rpal_2631 Rhodopseudomonas palustris TIE-1 IucA/IucC family protein YP_001991617.1 2848636 R 395960 CDS YP_001991618.1 192291013 6410294 complement(2850353..2852134) 1 NC_011004.1 PFAM: IucA/IucC family protein; KEGG: nwi:Nwi_2302 siderophore synthetase component; IucA/IucC family protein 2852134 6410294 Rpal_2632 Rhodopseudomonas palustris TIE-1 IucA/IucC family protein YP_001991618.1 2850353 R 395960 CDS YP_001991619.1 192291014 6410295 2852399..2852920 1 NC_011004.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: nwi:Nwi_2303 Fec I like protein; ECF subfamily RNA polymerase sigma-24 subunit 2852920 6410295 Rpal_2633 Rhodopseudomonas palustris TIE-1 ECF subfamily RNA polymerase sigma-24 subunit YP_001991619.1 2852399 D 395960 CDS YP_001991620.1 192291015 6410296 complement(2853107..2854798) 1 NC_011004.1 PFAM: ABC transporter; SbmABacA family protein; ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_1667 ABC transporter (fused ATP-binding and permease components); ABC transporter 2854798 6410296 Rpal_2634 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991620.1 2853107 R 395960 CDS YP_001991621.1 192291016 6410297 complement(2854795..2855559) 1 NC_011004.1 PFAM: ferric iron reductase; KEGG: xau:Xaut_2784 ferric iron reductase; ferric iron reductase 2855559 6410297 Rpal_2635 Rhodopseudomonas palustris TIE-1 ferric iron reductase YP_001991621.1 2854795 R 395960 CDS YP_001991622.1 192291017 6410298 complement(2855583..2857913) 1 NC_011004.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bpe:BP1138 ferric siderophore receptor; TonB-dependent siderophore receptor 2857913 6410298 Rpal_2636 Rhodopseudomonas palustris TIE-1 TonB-dependent siderophore receptor YP_001991622.1 2855583 R 395960 CDS YP_001991623.1 192291018 6410299 complement(2858517..2859137) 1 NC_011004.1 KEGG: gtn:GTNG_1127 dipicolinate synthase, A chain; hypothetical protein 2859137 6410299 Rpal_2637 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991623.1 2858517 R 395960 CDS YP_001991624.1 192291019 6410300 complement(2859390..2860511) 1 NC_011004.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 2860511 6410300 Rpal_2638 Rhodopseudomonas palustris TIE-1 ribonucleotide-diphosphate reductase subunit beta YP_001991624.1 2859390 R 395960 CDS YP_001991625.1 192291020 6410301 complement(2860532..2863456) 1 NC_011004.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2863456 6410301 Rpal_2639 Rhodopseudomonas palustris TIE-1 ribonucleotide-diphosphate reductase subunit alpha YP_001991625.1 2860532 R 395960 CDS YP_001991626.1 192291021 6410302 complement(2863776..2864477) 1 NC_011004.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: radical SAM domain protein; KEGG: pde:Pden_2987 anaerobic ribonucleoside-triphosphate reductase activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein 2864477 6410302 Rpal_2640 Rhodopseudomonas palustris TIE-1 anaerobic ribonucleoside-triphosphate reductase activating protein YP_001991626.1 2863776 R 395960 CDS YP_001991627.1 192291022 6410303 complement(2864434..2864625) 1 NC_011004.1 KEGG: pde:Pden_2988 hypothetical protein; hypothetical protein 2864625 6410303 Rpal_2641 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991627.1 2864434 R 395960 CDS YP_001991628.1 192291023 6410304 complement(2864643..2866664) 1 NC_011004.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2866664 6410304 Rpal_2642 Rhodopseudomonas palustris TIE-1 anaerobic ribonucleoside triphosphate reductase YP_001991628.1 2864643 R 395960 CDS YP_001991629.1 192291024 6410305 complement(2866999..2867535) 1 NC_011004.1 KEGG: smd:Smed_4449 hypothetical protein; hypothetical protein 2867535 6410305 Rpal_2643 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991629.1 2866999 R 395960 CDS YP_001991630.1 192291025 6410306 complement(2867587..2869011) 1 NC_011004.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: swi:Swit_4792 protein of unknown function DUF955; XRE family transcriptional regulator 2869011 6410306 Rpal_2644 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001991630.1 2867587 R 395960 CDS YP_001991631.1 192291026 6410307 2869155..2869580 1 NC_011004.1 PFAM: thioesterase superfamily protein; KEGG: pde:Pden_1349 thioesterase superfamily protein; thioesterase superfamily protein 2869580 6410307 Rpal_2645 Rhodopseudomonas palustris TIE-1 thioesterase superfamily protein YP_001991631.1 2869155 D 395960 CDS YP_001991632.1 192291027 6410308 2869577..2871109 1 NC_011004.1 PFAM: MmgE/PrpD family protein; KEGG: pde:Pden_1348 2-methylcitrate dehydratase; 2-methylcitrate dehydratase 2871109 6410308 Rpal_2646 Rhodopseudomonas palustris TIE-1 2-methylcitrate dehydratase YP_001991632.1 2869577 D 395960 CDS YP_001991633.1 192291028 6410309 2871145..2872329 1 NC_011004.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 2872329 6410309 Rpal_2647 Rhodopseudomonas palustris TIE-1 methylcitrate synthase YP_001991633.1 2871145 D 395960 CDS YP_001991634.1 192291029 6410310 2872340..2873257 1 NC_011004.1 TIGRFAM: methylisocitrate lyase; KEGG: vei:Veis_0650 methylisocitrate lyase; methylisocitrate lyase 2873257 6410310 Rpal_2648 Rhodopseudomonas palustris TIE-1 methylisocitrate lyase YP_001991634.1 2872340 D 395960 CDS YP_001991635.1 192291030 6410311 2873290..2873886 1 NC_011004.1 PFAM: protein of unknown function DUF208; KEGG: nwi:Nwi_2889 protein of unknown function DUF208; hypothetical protein 2873886 6410311 Rpal_2649 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991635.1 2873290 D 395960 CDS YP_001991636.1 192291031 6410312 2874236..2876602 1 NC_011004.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2876602 6410312 Rpal_2650 Rhodopseudomonas palustris TIE-1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_001991636.1 2874236 D 395960 CDS YP_001991637.1 192291032 6410313 2877460..2879862 1 NC_011004.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_2201 TonB-dependent receptor; TonB-dependent receptor 2879862 6410313 Rpal_2651 Rhodopseudomonas palustris TIE-1 TonB-dependent receptor YP_001991637.1 2877460 D 395960 CDS YP_001991638.1 192291033 6410314 2879871..2883773 1 NC_011004.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 2883773 cobN 6410314 cobN Rhodopseudomonas palustris TIE-1 cobaltochelatase subunit CobN YP_001991638.1 2879871 D 395960 CDS YP_001991639.1 192291034 6410315 2883770..2884246 1 NC_011004.1 KEGG: pau:PA14_39630 hypothetical protein; hypothetical protein 2884246 6410315 Rpal_2653 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991639.1 2883770 D 395960 CDS YP_001991640.1 192291035 6410316 2884246..2884581 1 NC_011004.1 KEGG: pau:PA14_39620 hypothetical protein; hypothetical protein 2884581 6410316 Rpal_2654 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991640.1 2884246 D 395960 CDS YP_001991641.1 192291036 6410319 2886979..2887983 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bja:blr7666 transcriptional regulatory protein; AraC family transcriptional regulator 2887983 6410319 Rpal_2656 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001991641.1 2886979 D 395960 CDS YP_001991642.1 192291037 6410320 2888056..2888928 1 NC_011004.1 PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: mag:amb1575 NAD(+)-dinitrogen-reductase ADP-D-ribosyltransferase; NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase 2888928 6410320 Rpal_2657 Rhodopseudomonas palustris TIE-1 NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase YP_001991642.1 2888056 D 395960 CDS YP_001991643.1 192291038 6410321 2888940..2889830 1 NC_011004.1 KEGG: mag:amb1576 ADP-ribosyl-[dinitrogen reductase] glycohydrolase; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; PFAM: ADP-ribosylation/Crystallin J1; ADP-ribosyl-(dinitrogen reductase) hydrolase 2889830 6410321 Rpal_2658 Rhodopseudomonas palustris TIE-1 ADP-ribosyl-(dinitrogen reductase) hydrolase YP_001991643.1 2888940 D 395960 CDS YP_001991644.1 192291039 6410322 complement(2889959..2890078) 1 NC_011004.1 hypothetical protein 2890078 6410322 Rpal_2659 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991644.1 2889959 R 395960 CDS YP_001991645.1 192291040 6410323 complement(2890326..2890661) 1 NC_011004.1 KEGG: bja:blr5534 hypothetical protein; hypothetical protein 2890661 6410323 Rpal_2660 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991645.1 2890326 R 395960 CDS YP_001991646.1 192291041 6410324 2891057..2892214 1 NC_011004.1 KEGG: bra:BRADO4860 aliphatic amidase expression-regulating protein, AmiC; aliphatic amidase expression-regulating protein, AmiC 2892214 6410324 Rpal_2661 Rhodopseudomonas palustris TIE-1 aliphatic amidase expression-regulating protein, AmiC YP_001991646.1 2891057 D 395960 CDS YP_001991647.1 192291042 6410325 2892211..2892876 1 NC_011004.1 PFAM: ANTAR domain protein; KEGG: bra:BRADO4859 conserved hypothetical protein; ANTAR domain (AmiR antitermination protein); response regulator receiver and ANTAR domain-containing protein 2892876 6410325 Rpal_2662 Rhodopseudomonas palustris TIE-1 response regulator receiver and ANTAR domain-containing protein YP_001991647.1 2892211 D 395960 CDS YP_001991648.1 192291043 6410326 2892888..2894126 1 NC_011004.1 KEGG: azc:AZC_3889 UreA/short-chain amide transport system substrate-binding protein precursor; UreA/short-chain amide transport system substrate-binding protein 2894126 6410326 Rpal_2663 Rhodopseudomonas palustris TIE-1 UreA/short-chain amide transport system substrate-binding protein YP_001991648.1 2892888 D 395960 CDS YP_001991649.1 192291044 6410327 2894245..2895117 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bra:BRADO4857 branched-chain amino acid ABC transporter (permease protein); inner-membrane translocator 2895117 6410327 Rpal_2664 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001991649.1 2894245 D 395960 CDS YP_001991650.1 192291045 6410328 2895129..2896193 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bra:BRADO4856 branched-chain amino acid ABC transporter (permease protein); inner-membrane translocator 2896193 6410328 Rpal_2665 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001991650.1 2895129 D 395960 CDS YP_001991651.1 192291046 6410329 2896193..2896915 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_3205 branched-chain amino acid ABC transporter (ATP-binding protein); ABC transporter 2896915 6410329 Rpal_2666 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991651.1 2896193 D 395960 CDS YP_001991652.1 192291047 6410330 2896908..2897621 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO4854 branched-chain amino acid ABC transporter (ATP-binding protein); ABC transporter 2897621 6410330 Rpal_2667 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991652.1 2896908 D 395960 CDS YP_001991653.1 192291048 6410331 2897647..2898636 1 NC_011004.1 PFAM: Acetamidase/formamidase; KEGG: bbt:BBta_3207 acetamidase/formamidase family protein; Acetamidase/formamidase 2898636 6410331 Rpal_2668 Rhodopseudomonas palustris TIE-1 Acetamidase/formamidase YP_001991653.1 2897647 D 395960 CDS YP_001991654.1 192291049 6410332 2898652..2900391 1 NC_011004.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bbt:BBta_3208 nitrilase/cyanide hydratase family protein (carbon-nitrogen hydrolase); nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2900391 6410332 Rpal_2669 Rhodopseudomonas palustris TIE-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001991654.1 2898652 D 395960 CDS YP_001991655.1 192291050 6410333 2900407..2901168 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mrd:Mrad2831_3316 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2901168 6410333 Rpal_2670 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001991655.1 2900407 D 395960 CDS YP_001991656.1 192291051 6410334 complement(2901472..2902416) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: wsu:WS1803 molybdenum transport ATP-binding protein; ABC transporter 2902416 6410334 Rpal_2671 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991656.1 2901472 R 395960 CDS YP_001991657.1 192291052 6410335 2902521..2903246 1 NC_011004.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; KEGG: azo:azo3846 molybdate transport system substrate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 2903246 6410335 Rpal_2672 Rhodopseudomonas palustris TIE-1 molybdenum ABC transporter periplasmic molybdate-binding protein YP_001991657.1 2902521 D 395960 CDS YP_001991658.1 192291053 6410336 2903250..2903945 1 NC_011004.1 TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: azo:azo3845 molybdenum ABC transporter permease protein; molybdate ABC transporter inner membrane subunit 2903945 6410336 Rpal_2673 Rhodopseudomonas palustris TIE-1 molybdate ABC transporter inner membrane subunit YP_001991658.1 2903250 D 395960 CDS YP_001991659.1 192291054 6410337 complement(2903966..2904187) 1 NC_011004.1 KEGG: bbt:BBta_6055 hypothetical protein; hypothetical protein 2904187 6410337 Rpal_2674 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991659.1 2903966 R 395960 CDS YP_001991660.1 192291055 6410338 complement(2904310..2905344) 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: smd:Smed_2599 transcriptional regulator, AraC family; AraC family transcriptional regulator 2905344 6410338 Rpal_2675 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001991660.1 2904310 R 395960 CDS YP_001991661.1 192291056 6410339 2905450..2905998 1 NC_011004.1 PFAM: isochorismatase hydrolase; KEGG: isochorismatase hydrolase; isochorismatase hydrolase 2905998 6410339 Rpal_2676 Rhodopseudomonas palustris TIE-1 isochorismatase hydrolase YP_001991661.1 2905450 D 395960 CDS YP_001991662.1 192291057 6410340 2906272..2907225 1 NC_011004.1 KEGG: xau:Xaut_4179 hypothetical protein; hypothetical protein 2907225 6410340 Rpal_2677 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991662.1 2906272 D 395960 CDS YP_001991663.1 192291058 6410341 complement(2907129..2907362) 1 NC_011004.1 hypothetical protein 2907362 6410341 Rpal_2678 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991663.1 2907129 R 395960 CDS YP_001991664.1 192291059 6410342 complement(2907414..2908079) 1 NC_011004.1 PFAM: Protein of unknown function DUF1847; KEGG: cth:Cthe_2788 hypothetical protein; hypothetical protein 2908079 6410342 Rpal_2679 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991664.1 2907414 R 395960 CDS YP_001991665.1 192291060 6410343 complement(2908175..2908831) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: pfl:PFL_0240 D-methionine ABC transporter permease protein; ABC transporter inner membrane protein 2908831 6410343 Rpal_2680 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001991665.1 2908175 R 395960 CDS YP_001991666.1 192291061 6410344 complement(2908812..2909930) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pap:PSPA7_2912 probable ATP-binding component of ABC transporter; ABC transporter 2909930 6410344 Rpal_2681 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991666.1 2908812 R 395960 CDS YP_001991667.1 192291062 6410345 complement(2909930..2910745) 1 NC_011004.1 PFAM: NLPA lipoprotein; KEGG: pmy:Pmen_2364 NlpA lipoprotein; NLPA lipoprotein 2910745 6410345 Rpal_2682 Rhodopseudomonas palustris TIE-1 NLPA lipoprotein YP_001991667.1 2909930 R 395960 CDS YP_001991668.1 192291063 6410346 2911316..2912926 1 NC_011004.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: ccr:CC_0945 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 2912926 6410346 Rpal_2683 Rhodopseudomonas palustris TIE-1 glucose-methanol-choline oxidoreductase YP_001991668.1 2911316 D 395960 CDS YP_001991669.1 192291064 6410347 2912923..2914305 1 NC_011004.1 KEGG: dol:Dole_0559 phenylacetate--CoA ligase; phenylacetate--CoA ligase 2914305 6410347 Rpal_2684 Rhodopseudomonas palustris TIE-1 phenylacetate--CoA ligase YP_001991669.1 2912923 D 395960 CDS YP_001991670.1 192291065 6410348 2914327..2915064 1 NC_011004.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_B1895 enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase 2915064 6410348 Rpal_2685 Rhodopseudomonas palustris TIE-1 Enoyl-CoA hydratase/isomerase YP_001991670.1 2914327 D 395960 CDS YP_001991671.1 192291066 6410349 2915401..2916489 1 NC_011004.1 KEGG: bja:bll6455 ABC transporter substrate-binding protein; ABC transporter substrate-binding protein 2916489 6410349 Rpal_2686 Rhodopseudomonas palustris TIE-1 ABC transporter substrate-binding protein YP_001991671.1 2915401 D 395960 CDS YP_001991672.1 192291067 6410350 2916467..2917495 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:bll6454 ABC transporter permease protein; ABC transporter inner membrane protein 2917495 6410350 Rpal_2687 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001991672.1 2916467 D 395960 CDS YP_001991673.1 192291068 6410351 2917489..2918283 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll6453 ABC transporter ATP-binding protein; ABC transporter 2918283 6410351 Rpal_2688 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991673.1 2917489 D 395960 CDS YP_001991674.1 192291069 6410352 complement(2918441..2920081) 1 NC_011004.1 PFAM: phosphate transporter; KEGG: bra:BRADO6359 low-affinity inorganic phosphate transport protein (PiT family); phosphate transporter 2920081 6410352 Rpal_2689 Rhodopseudomonas palustris TIE-1 phosphate transporter YP_001991674.1 2918441 R 395960 CDS YP_001991675.1 192291070 6410353 2920251..2920778 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: oan:Oant_0083 transcriptional regulator, MarR family; MarR family transcriptional regulator 2920778 6410353 Rpal_2690 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001991675.1 2920251 D 395960 CDS YP_001991676.1 192291071 6410354 2920765..2921502 1 NC_011004.1 KEGG: gbe:GbCGDNIH1_1303 hypothetical protein; hypothetical protein 2921502 6410354 Rpal_2691 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991676.1 2920765 D 395960 CDS YP_001991677.1 192291072 6410355 2921522..2921896 1 NC_011004.1 KEGG: oan:Oant_0082 hypothetical protein; hypothetical protein 2921896 6410355 Rpal_2692 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991677.1 2921522 D 395960 CDS YP_001991678.1 192291073 6410357 complement(2922611..2924341) 1 NC_011004.1 KEGG: rso:RS03125 probable transmembrane protein; hypothetical protein 2924341 6410357 Rpal_2694 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991678.1 2922611 R 395960 CDS YP_001991679.1 192291074 6410358 complement(2924402..2924887) 1 NC_011004.1 KEGG: bja:blr6106 hypothetical protein; hypothetical protein 2924887 6410358 Rpal_2695 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991679.1 2924402 R 395960 CDS YP_001991680.1 192291075 6410360 2926196..2927650 1 NC_011004.1 PFAM: porin; KEGG: pol:Bpro_5280 hypothetical protein; porin 2927650 6410360 Rpal_2696 Rhodopseudomonas palustris TIE-1 porin YP_001991680.1 2926196 D 395960 CDS YP_001991681.1 192291076 6410361 complement(2927951..2930188) 1 NC_011004.1 PFAM: lytic transglycosylase; KEGG: bbt:BBta_4695 soluble lytic transglycosylase (SLT); lytic transglycosylase 2930188 6410361 Rpal_2697 Rhodopseudomonas palustris TIE-1 lytic transglycosylase YP_001991681.1 2927951 R 395960 CDS YP_001991682.1 192291077 6410362 complement(2930429..2931058) 1 NC_011004.1 KEGG: bbt:BBta_4232 exported protein of unknown function; hypothetical protein 2931058 6410362 Rpal_2698 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991682.1 2930429 R 395960 CDS YP_001991683.1 192291078 6410363 2931305..2931715 1 NC_011004.1 Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis; NADH dehydrogenase 2931715 6410363 Rpal_2699 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase YP_001991683.1 2931305 D 395960 CDS YP_001991684.1 192291079 6410364 complement(2931756..2932445) 1 NC_011004.1 PFAM: ThiJ/PfpI domain protein; KEGG: bja:bll4280 probable ThiJ/PfpI family protein; ThiJ/PfpI domain-containing protein 2932445 6410364 Rpal_2700 Rhodopseudomonas palustris TIE-1 ThiJ/PfpI domain-containing protein YP_001991684.1 2931756 R 395960 CDS YP_001991685.1 192291080 6410365 2932569..2933507 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bbt:BBta_4229 transcriptional regulator AraC/XylS family; AraC family transcriptional regulator 2933507 6410365 Rpal_2701 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001991685.1 2932569 D 395960 CDS YP_001991686.1 192291081 6410366 complement(2933526..2934953) 1 NC_011004.1 KEGG: bja:bll4656 hypothetical protein; beta-agarase 2934953 6410366 Rpal_2702 Rhodopseudomonas palustris TIE-1 beta-agarase YP_001991686.1 2933526 R 395960 CDS YP_001991687.1 192291082 6410367 complement(2934967..2935917) 1 NC_011004.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: bbt:BBta_4223 lipase/esterase; alpha/beta hydrolase 2935917 6410367 Rpal_2703 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase YP_001991687.1 2934967 R 395960 CDS YP_001991688.1 192291083 6410368 2936150..2937139 1 NC_011004.1 KEGG: nha:Nham_1811 hypothetical protein; hypothetical protein 2937139 6410368 Rpal_2704 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991688.1 2936150 D 395960 CDS YP_001991689.1 192291084 6410369 complement(2937340..2938584) 1 NC_011004.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: azc:AZC_0903 serine protease; peptidase S1 and S6 chymotrypsin/Hap 2938584 6410369 Rpal_2705 Rhodopseudomonas palustris TIE-1 peptidase S1 and S6 chymotrypsin/Hap YP_001991689.1 2937340 R 395960 CDS YP_001991690.1 192291085 6410370 complement(2938648..2938968) 1 NC_011004.1 hypothetical protein 2938968 6410370 Rpal_2706 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991690.1 2938648 R 395960 CDS YP_001991691.1 192291086 6410371 complement(2939092..2939769) 1 NC_011004.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2939769 aat 6410371 aat Rhodopseudomonas palustris TIE-1 leucyl/phenylalanyl-tRNA--protein transferase YP_001991691.1 2939092 R 395960 CDS YP_001991692.1 192291087 6410372 complement(2939829..2941046) 1 NC_011004.1 KEGG: nha:Nham_3404 hypothetical protein; hypothetical protein 2941046 6410372 Rpal_2708 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991692.1 2939829 R 395960 CDS YP_001991693.1 192291088 6410373 complement(2941289..2941960) 1 NC_011004.1 KEGG: rle:pRL110433 hypothetical protein; hypothetical protein 2941960 6410373 Rpal_2709 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991693.1 2941289 R 395960 CDS YP_001991694.1 192291089 6410374 complement(2942093..2943184) 1 NC_011004.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: nha:Nham_2192 signal transduction histidine kinase; signal transduction histidine kinase 2943184 6410374 Rpal_2710 Rhodopseudomonas palustris TIE-1 signal transduction histidine kinase YP_001991694.1 2942093 R 395960 CDS YP_001991695.1 192291090 6410375 complement(2943181..2943624) 1 NC_011004.1 PFAM: response regulator receiver; KEGG: bbt:BBta_4218 two-component response regulator/receiver (CheY-like protein); response regulator receiver protein 2943624 6410375 Rpal_2711 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001991695.1 2943181 R 395960 CDS YP_001991696.1 192291091 6410376 complement(2943621..2945153) 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: bbt:BBta_4217 two-component sensor histidine kinase; multi-sensor signal transduction histidine kinase 2945153 6410376 Rpal_2712 Rhodopseudomonas palustris TIE-1 multi-sensor signal transduction histidine kinase YP_001991696.1 2943621 R 395960 CDS YP_001991697.1 192291092 6410377 complement(2945342..2946694) 1 NC_011004.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 2946694 6410377 Rpal_2713 Rhodopseudomonas palustris TIE-1 acetyl-CoA carboxylase biotin carboxylase subunit YP_001991697.1 2945342 R 395960 CDS YP_001991698.1 192291093 6410378 complement(2946812..2947306) 1 NC_011004.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: bbt:BBta_4215 acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit; acetyl-CoA carboxylase, biotin carboxyl carrier protein 2947306 6410378 Rpal_2714 Rhodopseudomonas palustris TIE-1 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001991698.1 2946812 R 395960 CDS YP_001991699.1 192291094 6410379 complement(2947345..2947800) 1 NC_011004.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 2947800 6410379 Rpal_2715 Rhodopseudomonas palustris TIE-1 3-dehydroquinate dehydratase YP_001991699.1 2947345 R 395960 CDS YP_001991700.1 192291095 6410380 complement(2948092..2948763) 1 NC_011004.1 PFAM: protein of unknown function DUF1236; KEGG: nha:Nham_4145 hypothetical protein; hypothetical protein 2948763 6410380 Rpal_2716 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991700.1 2948092 R 395960 CDS YP_001991701.1 192291096 6410381 2949030..2949242 1 NC_011004.1 KEGG: bbt:BBta_3130 hypothetical protein; hypothetical protein 2949242 6410381 Rpal_2717 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991701.1 2949030 D 395960 CDS YP_001991702.1 192291097 6410382 2949580..2950533 1 NC_011004.1 PFAM: cation efflux protein; KEGG: ppw:PputW619_3985 cation efflux protein; cation efflux protein 2950533 6410382 Rpal_2718 Rhodopseudomonas palustris TIE-1 cation efflux protein YP_001991702.1 2949580 D 395960 CDS YP_001991703.1 192291098 6410383 2950530..2951213 1 NC_011004.1 PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: bam:Bamb_0559 transcriptional regulator, TetR family; TetR family transcriptional regulator 2951213 6410383 Rpal_2719 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001991703.1 2950530 D 395960 CDS YP_001991704.1 192291099 6410384 complement(2951298..2952065) 1 NC_011004.1 PFAM: DSBA oxidoreductase; KEGG: nwi:Nwi_1750 DsbA oxidoreductase; DSBA oxidoreductase 2952065 6410384 Rpal_2720 Rhodopseudomonas palustris TIE-1 DSBA oxidoreductase YP_001991704.1 2951298 R 395960 CDS YP_001991705.1 192291100 6410385 complement(2952256..2952885) 1 NC_011004.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: maq:Maqu_0381 peroxidase; peroxidase 2952885 6410385 Rpal_2721 Rhodopseudomonas palustris TIE-1 peroxidase YP_001991705.1 2952256 R 395960 CDS YP_001991706.1 192291101 6410386 complement(2953097..2953486) 1 NC_011004.1 KEGG: nha:Nham_0685 hypothetical protein; hypothetical protein 2953486 6410386 Rpal_2722 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991706.1 2953097 R 395960 CDS YP_001991707.1 192291102 6410387 complement(2953673..2955100) 1 NC_011004.1 PFAM: peptidase M48 Ste24p; KEGG: bja:bll4295 hypothetical protein; peptidase M48 Ste24p 2955100 6410387 Rpal_2723 Rhodopseudomonas palustris TIE-1 peptidase M48 Ste24p YP_001991707.1 2953673 R 395960 CDS YP_001991708.1 192291103 6410388 2955208..2956398 1 NC_011004.1 PFAM: aminotransferase class I and II; KEGG: nha:Nham_2183 aminotransferase, class I and II; class I and II aminotransferase 2956398 6410388 Rpal_2724 Rhodopseudomonas palustris TIE-1 class I and II aminotransferase YP_001991708.1 2955208 D 395960 CDS YP_001991709.1 192291104 6410389 2956527..2957114 1 NC_011004.1 PFAM: BioY protein; KEGG: bja:blr4297 hypothetical protein; BioY protein 2957114 6410389 Rpal_2725 Rhodopseudomonas palustris TIE-1 BioY protein YP_001991709.1 2956527 D 395960 CDS YP_001991710.1 192291105 6410390 2957213..2958550 1 NC_011004.1 PFAM: sodium:dicarboxylate symporter; KEGG: bra:BRADO3510 C4-dicarboxylate transport protein; sodium:dicarboxylate symporter 2958550 6410390 Rpal_2726 Rhodopseudomonas palustris TIE-1 sodium:dicarboxylate symporter YP_001991710.1 2957213 D 395960 CDS YP_001991711.1 192291106 6410391 complement(2958655..2959674) 1 NC_011004.1 KEGG: rrs:RoseRS_0838 hypothetical protein; hypothetical protein 2959674 6410391 Rpal_2727 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991711.1 2958655 R 395960 CDS YP_001991712.1 192291107 6410392 complement(2959788..2962949) 1 NC_011004.1 TIGRFAM: ribonuclease, Rne/Rng family; KEGG: bra:BRADO3511 ribonuclease E; Rne/Rng family ribonuclease 2962949 6410392 Rpal_2728 Rhodopseudomonas palustris TIE-1 Rne/Rng family ribonuclease YP_001991712.1 2959788 R 395960 CDS YP_001991713.1 192291108 6410393 2963650..2964960 1 NC_011004.1 PFAM: cell wall hydrolase/autolysin; KEGG: bja:blr4306 N-acetylmuramoyl-L-alanine amidase precursor; N-acetylmuramoyl-L-alanine amidase 2964960 6410393 Rpal_2729 Rhodopseudomonas palustris TIE-1 N-acetylmuramoyl-L-alanine amidase YP_001991713.1 2963650 D 395960 CDS YP_001991714.1 192291109 6410394 2965180..2967678 1 NC_011004.1 KEGG: nha:Nham_1824 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 2967678 6410394 Rpal_2730 Rhodopseudomonas palustris TIE-1 penicillin-binding protein YP_001991714.1 2965180 D 395960 CDS YP_001991715.1 192291110 6410395 join(2967797..2967865,2967867..2968928) 1 NC_011004.1 KEGG: bpm:BURPS1710b_3602 hypothetical protein; hypothetical protein 2968928 6410395 Rpal_2731 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991715.1 2967797 D 395960 CDS YP_001991716.1 192291111 6410396 2968935..2969828 1 NC_011004.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bra:BRADO3517 dehydrogenase, NAD(P)-binding domain; 6-phosphogluconate dehydrogenase 2969828 6410396 Rpal_2732 Rhodopseudomonas palustris TIE-1 6-phosphogluconate dehydrogenase YP_001991716.1 2968935 D 395960 CDS YP_001991717.1 192291112 6410397 complement(2969955..2971325) 1 NC_011004.1 PFAM: peptidase M23; KEGG: bja:bll4323 hypothetical protein; peptidase M23 2971325 6410397 Rpal_2733 Rhodopseudomonas palustris TIE-1 peptidase M23 YP_001991717.1 2969955 R 395960 CDS YP_001991718.1 192291113 6410398 complement(2971421..2972137) 1 NC_011004.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bbt:BBta_3956 hypothetical protein; alkyl hydroperoxide reductase 2972137 6410398 Rpal_2734 Rhodopseudomonas palustris TIE-1 alkyl hydroperoxide reductase YP_001991718.1 2971421 R 395960 CDS YP_001991719.1 192291114 6410399 2972332..2976054 1 NC_011004.1 KEGG: nha:Nham_2333 hypothetical protein; hypothetical protein 2976054 6410399 Rpal_2735 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991719.1 2972332 D 395960 CDS YP_001991720.1 192291115 6410400 complement(2976202..2976762) 1 NC_011004.1 PFAM: cytochrome B561; KEGG: reh:H16_A3123 cytochrome b561; cytochrome B561 2976762 6410400 Rpal_2736 Rhodopseudomonas palustris TIE-1 cytochrome B561 YP_001991720.1 2976202 R 395960 CDS YP_001991721.1 192291116 6410401 complement(2976983..2978200) 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_3959 membrane protein of unknown function; major facilitator superfamily protein 2978200 6410401 Rpal_2737 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001991721.1 2976983 R 395960 CDS YP_001991722.1 192291117 6410402 complement(2978285..2979541) 1 NC_011004.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 2979541 6410402 Rpal_2738 Rhodopseudomonas palustris TIE-1 tyrosyl-tRNA synthetase YP_001991722.1 2978285 R 395960 CDS YP_001991723.1 192291118 6410403 2979699..2980802 1 NC_011004.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 2980802 anmK 6410403 anmK Rhodopseudomonas palustris TIE-1 anhydro-N-acetylmuramic acid kinase YP_001991723.1 2979699 D 395960 CDS YP_001991724.1 192291119 6410404 complement(2980856..2981503) 1 NC_011004.1 KEGG: nwi:Nwi_1666 hypothetical protein; hypothetical protein 2981503 6410404 Rpal_2740 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991724.1 2980856 R 395960 CDS YP_001991725.1 192291120 6410405 2981740..2982912 1 NC_011004.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bbt:BBta_3965 cysteine desulfurase (nitrogenase metalloclusters biosynthesis protein NifS); class V aminotransferase 2982912 6410405 Rpal_2741 Rhodopseudomonas palustris TIE-1 class V aminotransferase YP_001991725.1 2981740 D 395960 CDS YP_001991726.1 192291121 6410406 2982995..2984476 1 NC_011004.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 2984476 6410406 Rpal_2742 Rhodopseudomonas palustris TIE-1 cysteine desulfurase activator complex subunit SufB YP_001991726.1 2982995 D 395960 CDS YP_001991727.1 192291122 6410407 2984609..2985367 1 NC_011004.1 KEGG: bra:BRADO3542 SufC, related to ABC transporter associated with Fe-S cluster assembly (ATP-binding protein); TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; SMART: ATPase AAA; FeS assembly ATPase SufC 2985367 6410407 Rpal_2743 Rhodopseudomonas palustris TIE-1 FeS assembly ATPase SufC YP_001991727.1 2984609 D 395960 CDS YP_001991728.1 192291123 6410408 2985391..2986704 1 NC_011004.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: bra:BRADO3543 SufD, needed for FhuF Fe-S center production/stability; FeS assembly protein SufD 2986704 6410408 Rpal_2744 Rhodopseudomonas palustris TIE-1 FeS assembly protein SufD YP_001991728.1 2985391 D 395960 CDS YP_001991729.1 192291124 6410409 2986701..2987948 1 NC_011004.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bbt:BBta_3969 cysteine desulfurase; SufS subfamily cysteine desulfurase 2987948 6410409 Rpal_2745 Rhodopseudomonas palustris TIE-1 SufS subfamily cysteine desulfurase YP_001991729.1 2986701 D 395960 CDS YP_001991730.1 192291125 6410410 2987945..2988313 1 NC_011004.1 TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; KEGG: bja:blr4343 hypothetical protein; FeS assembly SUF system protein 2988313 6410410 Rpal_2746 Rhodopseudomonas palustris TIE-1 FeS assembly SUF system protein YP_001991730.1 2987945 D 395960 CDS YP_001991731.1 192291126 6410411 2988321..2988737 1 NC_011004.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: csa:Csal_3007 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2988737 6410411 Rpal_2747 Rhodopseudomonas palustris TIE-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001991731.1 2988321 D 395960 CDS YP_001991732.1 192291127 6410412 2988867..2989238 1 NC_011004.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: nwi:Nwi_1659 HesB/YadR/YfhF; iron-sulfur cluster assembly accessory protein 2989238 6410412 Rpal_2748 Rhodopseudomonas palustris TIE-1 iron-sulfur cluster assembly accessory protein YP_001991732.1 2988867 D 395960 CDS YP_001991733.1 192291128 6410413 2989392..2991356 1 NC_011004.1 KEGG: hch:HCH_03141 hypothetical protein; hypothetical protein 2991356 6410413 Rpal_2749 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991733.1 2989392 D 395960 CDS YP_001991734.1 192291129 6410414 2991362..2992462 1 NC_011004.1 KEGG: mgm:Mmc1_0291 FAD dependent oxidoreductase; dehydrogenase (flavoprotein)-like protein 2992462 6410414 Rpal_2750 Rhodopseudomonas palustris TIE-1 dehydrogenase (flavoprotein)-like protein YP_001991734.1 2991362 D 395960 CDS YP_001991735.1 192291130 6410415 2992459..2992932 1 NC_011004.1 PFAM: Endoribonuclease L-PSP; KEGG: hha:Hhal_0968 endoribonuclease L-PSP; endoribonuclease L-PSP 2992932 6410415 Rpal_2751 Rhodopseudomonas palustris TIE-1 endoribonuclease L-PSP YP_001991735.1 2992459 D 395960 CDS YP_001991736.1 192291131 6410416 2993018..2994688 1 NC_011004.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT0296 TPR repeat; hypothetical protein 2994688 6410416 Rpal_2752 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991736.1 2993018 D 395960 CDS YP_001991737.1 192291132 6410417 2994803..2995309 1 NC_011004.1 PFAM: TfoX domain protein; KEGG: bra:BRADO3547 conserved hypothetical protein; TfoX N-terminal domain; TfoX domain-containing protein 2995309 6410417 Rpal_2753 Rhodopseudomonas palustris TIE-1 TfoX domain-containing protein YP_001991737.1 2994803 D 395960 CDS YP_001991738.1 192291133 6410418 complement(2995318..2996385) 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bja:bll4347 hypothetical protein; diguanylate cyclase 2996385 6410418 Rpal_2754 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001991738.1 2995318 R 395960 CDS YP_001991739.1 192291134 6410419 complement(2996484..2997902) 1 NC_011004.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bja:bll4348 ATP-dependent RNA helicase; DEAD/DEAH box helicase 2997902 6410419 Rpal_2755 Rhodopseudomonas palustris TIE-1 DEAD/DEAH box helicase YP_001991739.1 2996484 R 395960 CDS YP_001991740.1 192291135 6410420 complement(2998176..2999198) 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; regulatory protein LacI; KEGG: bja:blr7666 transcriptional regulatory protein; AraC family transcriptional regulator 2999198 6410420 Rpal_2756 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001991740.1 2998176 R 395960 CDS YP_001991741.1 192291136 6410421 2999524..3001209 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bra:BRADO2559 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3001209 6410421 Rpal_2757 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001991741.1 2999524 D 395960 CDS YP_001991742.1 192291137 6410422 3001387..3002892 1 NC_011004.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: nwi:Nwi_1656 peptidase C14, caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 3002892 6410422 Rpal_2758 Rhodopseudomonas palustris TIE-1 peptidase C14 caspase catalytic subunit p20 YP_001991742.1 3001387 D 395960 CDS YP_001991743.1 192291138 6410423 complement(3002947..3003783) 1 NC_011004.1 SMART: helix-turn-helix domain protein; KEGG: gbe:GbCGDNIH1_1784 DNA-binding protein; XRE family transcriptional regulator 3003783 6410423 Rpal_2759 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001991743.1 3002947 R 395960 CDS YP_001991744.1 192291139 6410424 3003882..3004787 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: cak:Caul_3998 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3004787 6410424 Rpal_2760 Rhodopseudomonas palustris TIE-1 NAD-dependent epimerase/dehydratase YP_001991744.1 3003882 D 395960 CDS YP_001991745.1 192291140 6410425 complement(3004821..3005009) 1 NC_011004.1 KEGG: nha:Nham_2319 hypothetical protein; hypothetical protein 3005009 6410425 Rpal_2761 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991745.1 3004821 R 395960 CDS YP_001991746.1 192291141 6410426 complement(3005229..3005699) 1 NC_011004.1 KEGG: bra:BRADO3937 conserved hypothetical protein; signal peptide; hypothetical protein 3005699 6410426 Rpal_2762 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991746.1 3005229 R 395960 CDS YP_001991747.1 192291142 6410427 3005841..3006128 1 NC_011004.1 PFAM: plasmid maintenance system killer; KEGG: pla:Plav_0020 plasmid maintenance system killer; plasmid maintenance system killer protein 3006128 6410427 Rpal_2763 Rhodopseudomonas palustris TIE-1 plasmid maintenance system killer protein YP_001991747.1 3005841 D 395960 CDS YP_001991748.1 192291143 6410428 3006142..3006429 1 NC_011004.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: cbd:COXBU7E912_0533 addiction module antidote protein, HigA family; XRE family transcriptional regulator 3006429 6410428 Rpal_2764 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001991748.1 3006142 D 395960 CDS YP_001991749.1 192291144 6410429 complement(3006442..3008493) 1 NC_011004.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3008493 6410429 Rpal_2765 Rhodopseudomonas palustris TIE-1 DNA topoisomerase IV subunit B YP_001991749.1 3006442 R 395960 CDS YP_001991750.1 192291145 6410430 3008951..3009481 1 NC_011004.1 PFAM: SNARE associated Golgi protein; KEGG: bja:blr4356 hypothetical protein; hypothetical protein 3009481 6410430 Rpal_2766 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991750.1 3008951 D 395960 CDS YP_001991751.1 192291146 6410431 3009567..3010556 1 NC_011004.1 PFAM: beta-lactamase domain protein; KEGG: bra:BRADO4092 conserved hypothetical protein; metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 3010556 6410431 Rpal_2767 Rhodopseudomonas palustris TIE-1 beta-lactamase domain-containing protein YP_001991751.1 3009567 D 395960 CDS YP_001991752.1 192291147 6410432 complement(3010702..3011247) 1 NC_011004.1 KEGG: rsp:RSP_0326 hypothetical protein; hypothetical protein 3011247 6410432 Rpal_2768 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991752.1 3010702 R 395960 CDS YP_001991753.1 192291148 6410433 3011698..3012363 1 NC_011004.1 PFAM: Negative transcriptional regulator; KEGG: bbt:BBta_3982 hypothetical protein; FMN-binding negative transcriptional regulator 3012363 6410433 Rpal_2769 Rhodopseudomonas palustris TIE-1 FMN-binding negative transcriptional regulator YP_001991753.1 3011698 D 395960 CDS YP_001991754.1 192291149 6410434 3012378..3013373 1 NC_011004.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 3013373 6410434 Rpal_2770 Rhodopseudomonas palustris TIE-1 N-acetyl-gamma-glutamyl-phosphate reductase YP_001991754.1 3012378 D 395960 CDS YP_001991755.1 192291150 6410435 3013443..3014042 1 NC_011004.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: atc:AGR_C_4253 hypothetical protein; type 12 methyltransferase 3014042 6410435 Rpal_2771 Rhodopseudomonas palustris TIE-1 type 12 methyltransferase YP_001991755.1 3013443 D 395960 CDS YP_001991756.1 192291151 6410436 3014297..3016093 1 NC_011004.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rle:RL2064 methyltransferase; radical SAM domain-containing protein 3016093 6410436 Rpal_2772 Rhodopseudomonas palustris TIE-1 radical SAM domain-containing protein YP_001991756.1 3014297 D 395960 CDS YP_001991757.1 192291152 6410437 3016340..3016702 1 NC_011004.1 KEGG: nha:Nham_2503 hypothetical protein; hypothetical protein 3016702 6410437 Rpal_2773 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991757.1 3016340 D 395960 CDS YP_001991758.1 192291153 6410438 complement(3016707..3017105) 1 NC_011004.1 PFAM: Endoribonuclease L-PSP; KEGG: azc:AZC_0227 translation initiation inhibitor; endoribonuclease L-PSP 3017105 6410438 Rpal_2774 Rhodopseudomonas palustris TIE-1 endoribonuclease L-PSP YP_001991758.1 3016707 R 395960 CDS YP_001991759.1 192291154 6410439 complement(3017455..3018153) 1 NC_011004.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bcs:BCAN_A2006 transcriptional regulator, GntR family; GntR family transcriptional regulator 3018153 6410439 Rpal_2775 Rhodopseudomonas palustris TIE-1 GntR family transcriptional regulator YP_001991759.1 3017455 R 395960 CDS YP_001991760.1 192291155 6410440 3018464..3019252 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pnu:Pnuc_1182 ABC transporter; ABC transporter 3019252 6410440 Rpal_2776 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991760.1 3018464 D 395960 CDS YP_001991761.1 192291156 6410441 3019252..3020130 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: pnu:Pnuc_1181 ABC transporter inner membrane protein; ABC transporter inner membrane protein 3020130 6410441 Rpal_2777 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001991761.1 3019252 D 395960 CDS YP_001991762.1 192291157 6410442 3020196..3021173 1 NC_011004.1 PFAM: NMT1/THI5 like domain protein; KEGG: pnu:Pnuc_1180 ABC transporter periplasmic protein; NMT1/THI5 like domain-containing protein 3021173 6410442 Rpal_2778 Rhodopseudomonas palustris TIE-1 NMT1/THI5 like domain-containing protein YP_001991762.1 3020196 D 395960 CDS YP_001991763.1 192291158 6410443 3021244..3022521 1 NC_011004.1 PFAM: Amidase; KEGG: bra:BRADO0324 amidase (AmiD); amidase 3022521 6410443 Rpal_2779 Rhodopseudomonas palustris TIE-1 amidase YP_001991763.1 3021244 D 395960 CDS YP_001991764.1 192291159 6410444 complement(3022563..3024368) 1 NC_011004.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; poly-beta-hydroxybutyrate polymerase domain protein; KEGG: bra:BRADO3568 poly-beta-hydroxybutyrate polymerase; poly(R)-hydroxyalkanoic acid synthase 3024368 6410444 Rpal_2780 Rhodopseudomonas palustris TIE-1 poly(R)-hydroxyalkanoic acid synthase YP_001991764.1 3022563 R 395960 CDS YP_001991765.1 192291160 6410445 3024695..3025000 1 NC_011004.1 KEGG: nha:Nham_2311 hypothetical protein; hypothetical protein 3025000 6410445 Rpal_2781 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991765.1 3024695 D 395960 CDS YP_001991766.1 192291161 6410446 3025185..3026405 1 NC_011004.1 PFAM: aminotransferase class I and II; KEGG: bja:blr4361 aminotransferase; aminotransferase 3026405 6410446 Rpal_2782 Rhodopseudomonas palustris TIE-1 aminotransferase YP_001991766.1 3025185 D 395960 CDS YP_001991767.1 192291162 6410447 3026484..3027809 1 NC_011004.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 3027809 6410447 Rpal_2783 Rhodopseudomonas palustris TIE-1 homoserine dehydrogenase YP_001991767.1 3026484 D 395960 CDS YP_001991768.1 192291163 6410448 3027872..3028876 1 NC_011004.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 3028876 glpX 6410448 glpX Rhodopseudomonas palustris TIE-1 fructose 1,6-bisphosphatase II YP_001991768.1 3027872 D 395960 CDS YP_001991769.1 192291164 6410449 3028984..3029427 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mrd:Mrad2831_1141 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3029427 6410449 Rpal_2785 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001991769.1 3028984 D 395960 CDS YP_001991770.1 192291165 6410450 3029493..3030218 1 NC_011004.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bbt:BBta_3998 (S)-2-haloacid dehalogenase; haloacid dehalogenase 3030218 6410450 Rpal_2786 Rhodopseudomonas palustris TIE-1 haloacid dehalogenase YP_001991770.1 3029493 D 395960 CDS YP_001991771.1 192291166 6410451 3030382..3032223 1 NC_011004.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: bbt:BBta_4000 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 3032223 6410451 Rpal_2787 Rhodopseudomonas palustris TIE-1 single-stranded-DNA-specific exonuclease RecJ YP_001991771.1 3030382 D 395960 CDS YP_001991772.1 192291167 6410452 complement(3032387..3032677) 1 NC_011004.1 hypothetical protein 3032677 6410452 Rpal_2788 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991772.1 3032387 R 395960 CDS YP_001991773.1 192291168 6410453 complement(3032762..3033880) 1 NC_011004.1 KEGG: dar:Daro_1033 hypothetical protein; hypothetical protein 3033880 6410453 Rpal_2789 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991773.1 3032762 R 395960 CDS YP_001991774.1 192291169 6410454 complement(3033898..3035127) 1 NC_011004.1 TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: bbt:BBta_4006 membrane-bound lytic transglycosylase precursor protein, signal peptide; lytic murein transglycosylase 3035127 6410454 Rpal_2790 Rhodopseudomonas palustris TIE-1 lytic murein transglycosylase YP_001991774.1 3033898 R 395960 CDS YP_001991775.1 192291170 6410455 3035350..3036330 1 NC_011004.1 similar to YegS from E. coli; lipid kinase 3036330 6410455 Rpal_2791 Rhodopseudomonas palustris TIE-1 lipid kinase YP_001991775.1 3035350 D 395960 CDS YP_001991776.1 192291171 6410456 complement(3036409..3036975) 1 NC_011004.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 3036975 6410456 Rpal_2792 Rhodopseudomonas palustris TIE-1 elongation factor P YP_001991776.1 3036409 R 395960 CDS YP_001991777.1 192291172 6410457 3037113..3038168 1 NC_011004.1 PFAM: tRNA synthetase class II (D K and N); KEGG: bbt:BBta_4013 lysyl-tRNA synthetase (lysine--tRNA ligase); tRNA synthetase class II (D K and N) 3038168 6410457 Rpal_2793 Rhodopseudomonas palustris TIE-1 tRNA synthetase class II (D K and N) YP_001991777.1 3037113 D 395960 CDS YP_001991778.1 192291173 6410458 3038165..3039256 1 NC_011004.1 KEGG: nwi:Nwi_1641 protein of unknown function DUF160; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM domain protein; lysine 2,3-aminomutase YodO family protein 3039256 6410458 Rpal_2794 Rhodopseudomonas palustris TIE-1 lysine 2,3-aminomutase YodO family protein YP_001991778.1 3038165 D 395960 CDS YP_001991779.1 192291174 6410459 3039417..3039677 1 NC_011004.1 KEGG: nha:Nham_2299 hypothetical protein; hypothetical protein 3039677 6410459 Rpal_2795 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991779.1 3039417 D 395960 CDS YP_001991780.1 192291175 6410460 complement(3039704..3040294) 1 NC_011004.1 KEGG: bra:BRADO3591 hypothetical protein; hypothetical protein 3040294 6410460 Rpal_2796 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991780.1 3039704 R 395960 CDS YP_001991781.1 192291176 6410461 3040801..3041028 1 NC_011004.1 hypothetical protein 3041028 6410461 Rpal_2797 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991781.1 3040801 D 395960 CDS YP_001991782.1 192291177 6410463 3042603..3042860 1 NC_011004.1 PFAM: type IV pilus assembly PilZ; KEGG: bra:BRADO3661 hypothetical protein; type IV pilus assembly PilZ 3042860 6410463 Rpal_2798 Rhodopseudomonas palustris TIE-1 type IV pilus assembly PilZ YP_001991782.1 3042603 D 395960 CDS YP_001991783.1 192291178 6410464 complement(3043174..3043623) 1 NC_011004.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nha:Nham_2145 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3043623 6410464 Rpal_2799 Rhodopseudomonas palustris TIE-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001991783.1 3043174 R 395960 CDS YP_001991784.1 192291179 6410465 3044116..3044877 1 NC_011004.1 PFAM: Silent information regulator protein Sir2; KEGG: bja:blr4409 hypothetical protein; silent information regulator protein Sir2 3044877 6410465 Rpal_2800 Rhodopseudomonas palustris TIE-1 silent information regulator protein Sir2 YP_001991784.1 3044116 D 395960 CDS YP_001991785.1 192291180 6410466 3045081..3045788 1 NC_011004.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bra:BRADO3673 cold shock protein, DNA binding, CspA-like; cold-shock DNA-binding domain-containing protein 3045788 6410466 Rpal_2801 Rhodopseudomonas palustris TIE-1 cold-shock DNA-binding domain-containing protein YP_001991785.1 3045081 D 395960 CDS YP_001991786.1 192291181 6410467 3045986..3046456 1 NC_011004.1 PFAM: protein of unknown function DUF192; KEGG: bja:blr4411 hypothetical protein; hypothetical protein 3046456 6410467 Rpal_2802 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991786.1 3045986 D 395960 CDS YP_001991787.1 192291182 6410469 3046841..3047146 1 NC_011004.1 PFAM: transcriptional regulator PadR family protein; KEGG: fre:Franean1_5040 transcriptional regulator, PadR-like family; PadR family transcriptional regulator 3047146 6410469 Rpal_2803 Rhodopseudomonas palustris TIE-1 PadR family transcriptional regulator YP_001991787.1 3046841 D 395960 CDS YP_001991788.1 192291183 6410470 3047134..3047676 1 NC_011004.1 hypothetical protein 3047676 6410470 Rpal_2804 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991788.1 3047134 D 395960 CDS YP_001991789.1 192291184 6410471 3048236..3049354 1 NC_011004.1 PFAM: glycosyl transferase group 1; KEGG: pau:PA14_66230 lipopolysaccharide core biosynthesis protein WaaG; group 1 glycosyl transferase 3049354 6410471 Rpal_2805 Rhodopseudomonas palustris TIE-1 group 1 glycosyl transferase YP_001991789.1 3048236 D 395960 CDS YP_001991790.1 192291185 6410472 complement(3049288..3050562) 1 NC_011004.1 KEGG: bja:bll4413 hypothetical protein; hypothetical protein 3050562 6410472 Rpal_2806 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991790.1 3049288 R 395960 CDS YP_001991791.1 192291186 6410473 3050805..3051110 1 NC_011004.1 PFAM: ETC complex I subunit conserved region; KEGG: bra:BRADO3676 ETC complex I subunit conserved region protein (fragment); ETC complex I subunit 3051110 6410473 Rpal_2807 Rhodopseudomonas palustris TIE-1 ETC complex I subunit YP_001991791.1 3050805 D 395960 CDS YP_001991792.1 192291187 6410474 3051310..3052914 1 NC_011004.1 PFAM: carboxyl transferase; KEGG: nha:Nham_2125 propionyl-CoA carboxylase; propionyl-CoA carboxylase 3052914 6410474 Rpal_2808 Rhodopseudomonas palustris TIE-1 propionyl-CoA carboxylase YP_001991792.1 3051310 D 395960 CDS YP_001991793.1 192291188 6410475 3052931..3054943 1 NC_011004.1 PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: bja:blr4421 3-methylcrotonyl-CoA carboxylase alpha subunit; carbamoyl-phosphate synthase L chain ATP-binding 3054943 6410475 Rpal_2809 Rhodopseudomonas palustris TIE-1 carbamoyl-phosphate synthase L chain ATP-binding YP_001991793.1 3052931 D 395960 CDS YP_001991794.1 192291189 6410476 3055064..3055969 1 NC_011004.1 PFAM: pyruvate carboxyltransferase; KEGG: bja:blr4422 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase 3055969 6410476 Rpal_2810 Rhodopseudomonas palustris TIE-1 pyruvate carboxyltransferase YP_001991794.1 3055064 D 395960 CDS YP_001991795.1 192291190 6410477 complement(3056066..3057424) 1 NC_011004.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:bll4428 hypothetical protein; TRAP dicarboxylate transporter subunit DctM 3057424 6410477 Rpal_2811 Rhodopseudomonas palustris TIE-1 TRAP dicarboxylate transporter subunit DctM YP_001991795.1 3056066 R 395960 CDS YP_001991796.1 192291191 6410478 complement(3057421..3057972) 1 NC_011004.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bja:bll4429 hypothetical protein; tripartite AtP-independent periplasmic transporter subunit DctQ 3057972 6410478 Rpal_2812 Rhodopseudomonas palustris TIE-1 tripartite AtP-independent periplasmic transporter subunit DctQ YP_001991796.1 3057421 R 395960 CDS YP_001991797.1 192291192 6410479 complement(3057969..3058988) 1 NC_011004.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:bll4430 hypothetical protein; TRAP dicarboxylate transporter subunit DctP 3058988 6410479 Rpal_2813 Rhodopseudomonas palustris TIE-1 TRAP dicarboxylate transporter subunit DctP YP_001991797.1 3057969 R 395960 CDS YP_001991798.1 192291193 6410480 3059259..3059498 1 NC_011004.1 TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: mms:mma_3539 hypothetical protein; pentapeptide MXKDX repeat-containing protein 3059498 6410480 Rpal_2814 Rhodopseudomonas palustris TIE-1 pentapeptide MXKDX repeat-containing protein YP_001991798.1 3059259 D 395960 CDS YP_001991799.1 192291194 6410481 3060023..3063016 1 NC_011004.1 TIGRFAM: outer membrane insertion C-terminal signal; PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: bja:bll1944 hypothetical protein; outer membrane insertion C-terminal signal 3063016 6410481 Rpal_2815 Rhodopseudomonas palustris TIE-1 outer membrane insertion C-terminal signal YP_001991799.1 3060023 D 395960 CDS YP_001991800.1 192291195 6410482 3063193..3063651 1 NC_011004.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: bja:blr2405 peptidylprolyl isomerase; FKBP-type peptidylprolyl isomerase 3063651 6410482 Rpal_2816 Rhodopseudomonas palustris TIE-1 FKBP-type peptidylprolyl isomerase YP_001991800.1 3063193 D 395960 CDS YP_001991801.1 192291196 6410483 complement(3063700..3064041) 1 NC_011004.1 hypothetical protein 3064041 6410483 Rpal_2817 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991801.1 3063700 R 395960 CDS YP_001991802.1 192291197 6410484 3064262..3065068 1 NC_011004.1 PFAM: protein of unknown function DUF1212; KEGG: rru:Rru_A2596 protein of unknown function DUF1212; hypothetical protein 3065068 6410484 Rpal_2818 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991802.1 3064262 D 395960 CDS YP_001991803.1 192291198 6410485 3065065..3065544 1 NC_011004.1 KEGG: rru:Rru_A2595 hypothetical protein; hypothetical protein 3065544 6410485 Rpal_2819 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991803.1 3065065 D 395960 CDS YP_001991804.1 192291199 6410486 complement(3065545..3065898) 1 NC_011004.1 hypothetical protein 3065898 6410486 Rpal_2820 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991804.1 3065545 R 395960 CDS YP_001991805.1 192291200 6410487 3066139..3066591 1 NC_011004.1 KEGG: bja:blr5152 hypothetical protein; hypothetical protein 3066591 6410487 Rpal_2821 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991805.1 3066139 D 395960 CDS YP_001991806.1 192291201 6410488 3066862..3068145 1 NC_011004.1 PFAM: FRG domain protein; KEGG: rle:RL1933 conserved hypothetical protein, possible fusion; FRG domain-containing protein 3068145 6410488 Rpal_2822 Rhodopseudomonas palustris TIE-1 FRG domain-containing protein YP_001991806.1 3066862 D 395960 CDS YP_001991807.1 192291202 6410490 3068568..3073781 1 NC_011004.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: nha:Nham_2078 alpha-2-macroglobulin-like; alpha-2-macroglobulin domain-containing protein 3073781 6410490 Rpal_2823 Rhodopseudomonas palustris TIE-1 alpha-2-macroglobulin domain-containing protein YP_001991807.1 3068568 D 395960 CDS YP_001991808.1 192291203 6410491 3073931..3075973 1 NC_011004.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: nha:Nham_2077 penicillin-binding protein 1C; penicillin-binding protein 1C 3075973 6410491 Rpal_2824 Rhodopseudomonas palustris TIE-1 penicillin-binding protein 1C YP_001991808.1 3073931 D 395960 CDS YP_001991809.1 192291204 6410492 3076024..3077769 1 NC_011004.1 PFAM: glycosyl transferase family 39; KEGG: bbt:BBta_3917 glycosyl transferase, family 39; glycosyl transferase family protein 3077769 6410492 Rpal_2825 Rhodopseudomonas palustris TIE-1 glycosyl transferase family protein YP_001991809.1 3076024 D 395960 CDS YP_001991810.1 192291205 6410493 3077771..3078619 1 NC_011004.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: bja:blr4441 hypothetical protein; PA-phosphatase-like phosphoesterase 3078619 6410493 Rpal_2826 Rhodopseudomonas palustris TIE-1 PA-phosphatase-like phosphoesterase YP_001991810.1 3077771 D 395960 CDS YP_001991811.1 192291206 6410494 3078683..3079435 1 NC_011004.1 PFAM: glycosyl transferase family 2; KEGG: nha:Nham_2075 glycosyl transferase, family 2; family 2 glycosyl transferase 3079435 6410494 Rpal_2827 Rhodopseudomonas palustris TIE-1 family 2 glycosyl transferase YP_001991811.1 3078683 D 395960 CDS YP_001991812.1 192291207 6410495 3079435..3079773 1 NC_011004.1 PFAM: lipid A biosynthesis domain protein; KEGG: bbt:BBta_3920 membrane protein of unknown function with lipid A disaccharide synthase (N-term); lipid A biosynthesis domain-containing protein 3079773 6410495 Rpal_2828 Rhodopseudomonas palustris TIE-1 lipid A biosynthesis domain-containing protein YP_001991812.1 3079435 D 395960 CDS YP_001991813.1 192291208 6410497 3081136..3082335 1 NC_011004.1 hypothetical protein 3082335 6410497 Rpal_2830 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991813.1 3081136 D 395960 CDS YP_001991814.1 192291209 6410498 complement(3082416..3083612) 1 NC_011004.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: bra:BRADO3914 cystathionine beta-lyase, PLP-dependent (beta-cystathionase); cystathionine beta-lyase 3083612 6410498 Rpal_2831 Rhodopseudomonas palustris TIE-1 cystathionine beta-lyase YP_001991814.1 3082416 R 395960 CDS YP_001991815.1 192291210 6410499 3083934..3084995 1 NC_011004.1 PFAM: extracellular solute-binding protein family 3; KEGG: nha:Nham_2071 extracellular solute-binding protein, family 3; family 3 extracellular solute-binding protein 3084995 6410499 Rpal_2832 Rhodopseudomonas palustris TIE-1 family 3 extracellular solute-binding protein YP_001991815.1 3083934 D 395960 CDS YP_001991816.1 192291211 6410500 3085016..3086221 1 NC_011004.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: nha:Nham_2070 amino acid ABC transporter permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 3086221 6410500 Rpal_2833 Rhodopseudomonas palustris TIE-1 polar amino acid ABC transporter inner membrane subunit YP_001991816.1 3085016 D 395960 CDS YP_001991817.1 192291212 6410501 3086218..3087723 1 NC_011004.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: nha:Nham_2069 amino acid ABC transporter permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 3087723 6410501 Rpal_2834 Rhodopseudomonas palustris TIE-1 polar amino acid ABC transporter inner membrane subunit YP_001991817.1 3086218 D 395960 CDS YP_001991818.1 192291213 6410502 3087739..3088479 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_3926 amino acid transport protein, ATP-binding protein; ABC transporter 3088479 6410502 Rpal_2835 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991818.1 3087739 D 395960 CDS YP_001991819.1 192291214 6410503 complement(3088504..3088773) 1 NC_011004.1 hypothetical protein 3088773 6410503 Rpal_2836 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991819.1 3088504 R 395960 CDS YP_001991820.1 192291215 6410504 complement(3088919..3089956) 1 NC_011004.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 3089956 6410504 Rpal_2837 Rhodopseudomonas palustris TIE-1 cysteine synthase A YP_001991820.1 3088919 R 395960 CDS YP_001991821.1 192291216 6410505 complement(3090066..3091295) 1 NC_011004.1 PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: bbt:BBta_3928 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 3091295 6410505 Rpal_2838 Rhodopseudomonas palustris TIE-1 cyclopropane-fatty-acyl-phospholipid synthase YP_001991821.1 3090066 R 395960 CDS YP_001991822.1 192291217 6410506 complement(3091355..3092200) 1 NC_011004.1 PFAM: protein of unknown function DUF1365; KEGG: bra:BRADO3907 hypothetical protein; hypothetical protein 3092200 6410506 Rpal_2839 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991822.1 3091355 R 395960 CDS YP_001991823.1 192291218 6410507 complement(3092203..3093516) 1 NC_011004.1 PFAM: amine oxidase; KEGG: bbt:BBta_3930 hypothetical protein; amine oxidase 3093516 6410507 Rpal_2840 Rhodopseudomonas palustris TIE-1 amine oxidase YP_001991823.1 3092203 R 395960 CDS YP_001991824.1 192291219 6410508 3093951..3095399 1 NC_011004.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: nha:Nham_2066 RND efflux system, outer membrane lipoprotein, NodT; NodT family RND efflux system outer membrane lipoprotein 3095399 6410508 Rpal_2841 Rhodopseudomonas palustris TIE-1 NodT family RND efflux system outer membrane lipoprotein YP_001991824.1 3093951 D 395960 CDS YP_001991825.1 192291220 6410509 3095389..3096756 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO3904 multidrug resistance protein MdtA precursor (multidrug transporter MdtA); RND family efflux transporter MFP subunit 3096756 6410509 Rpal_2842 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001991825.1 3095389 D 395960 CDS YP_001991826.1 192291221 6410510 3096827..3099958 1 NC_011004.1 PFAM: acriflavin resistance protein; KEGG: bja:blr4457 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 3099958 6410510 Rpal_2843 Rhodopseudomonas palustris TIE-1 acriflavin resistance protein YP_001991826.1 3096827 D 395960 CDS YP_001991827.1 192291222 6410511 3099958..3103065 1 NC_011004.1 PFAM: acriflavin resistance protein; KEGG: bra:BRADO3902 multidrug resistance protein MdtC (multidrug transporter MdtC); acriflavin resistance protein 3103065 6410511 Rpal_2844 Rhodopseudomonas palustris TIE-1 acriflavin resistance protein YP_001991827.1 3099958 D 395960 CDS YP_001991828.1 192291223 6410512 3103073..3103804 1 NC_011004.1 PFAM: DTW domain containing protein; KEGG: nha:Nham_2062 hypothetical protein; DTW domain containing protein 3103804 6410512 Rpal_2845 Rhodopseudomonas palustris TIE-1 DTW domain containing protein YP_001991828.1 3103073 D 395960 CDS YP_001991829.1 192291224 6410514 3104217..3105686 1 NC_011004.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: bca:BCE_0975 alginate O-acetyltransferase; membrane bound O-acyl transferase MBOAT family protein 3105686 6410514 Rpal_2846 Rhodopseudomonas palustris TIE-1 membrane bound O-acyl transferase MBOAT family protein YP_001991829.1 3104217 D 395960 CDS YP_001991830.1 192291225 6410515 3105689..3106822 1 NC_011004.1 KEGG: sfu:Sfum_1130 alginate O-acetyltransferase AlgJ; alginate O-acetyltransferase AlgJ 3106822 6410515 Rpal_2847 Rhodopseudomonas palustris TIE-1 alginate O-acetyltransferase AlgJ YP_001991830.1 3105689 D 395960 CDS YP_001991831.1 192291226 6410516 complement(3106843..3107019) 1 NC_011004.1 KEGG: bbt:BBta_3938 hypothetical protein; hypothetical protein 3107019 6410516 Rpal_2848 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991831.1 3106843 R 395960 CDS YP_001991832.1 192291227 6410517 complement(3107215..3107619) 1 NC_011004.1 KEGG: bra:BRADO3004 conserved hypothetical protein; signal peptide; hypothetical protein 3107619 6410517 Rpal_2849 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991832.1 3107215 R 395960 CDS YP_001991833.1 192291228 6410519 3108137..3108802 1 NC_011004.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: nha:Nham_1787 protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 3108802 6410519 Rpal_2850 Rhodopseudomonas palustris TIE-1 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_001991833.1 3108137 D 395960 CDS YP_001991834.1 192291229 6410520 3109013..3110404 1 NC_011004.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: nha:Nham_1826 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 3110404 6410520 Rpal_2851 Rhodopseudomonas palustris TIE-1 TolC family type I secretion outer membrane protein YP_001991834.1 3109013 D 395960 CDS YP_001991835.1 192291230 6410521 3110697..3111473 1 NC_011004.1 KEGG: bja:blr4474 hypothetical protein; hypothetical protein 3111473 6410521 Rpal_2852 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991835.1 3110697 D 395960 CDS YP_001991836.1 192291231 6410522 3111615..3114488 1 NC_011004.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3114488 valS 6410522 valS Rhodopseudomonas palustris TIE-1 valyl-tRNA synthetase YP_001991836.1 3111615 D 395960 CDS YP_001991837.1 192291232 6410523 3114492..3114878 1 NC_011004.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bpt:Bpet3619 probable lactoylglutathione lyase; glyoxalase/bleomycin resistance protein/dioxygenase 3114878 6410523 Rpal_2854 Rhodopseudomonas palustris TIE-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001991837.1 3114492 D 395960 CDS YP_001991838.1 192291233 6410524 3115074..3115640 1 NC_011004.1 KEGG: gur:Gura_0796 hypothetical protein; hypothetical protein 3115640 6410524 Rpal_2855 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991838.1 3115074 D 395960 CDS YP_001991839.1 192291234 6410525 complement(3115865..3116485) 1 NC_011004.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 3116485 6410525 Rpal_2856 Rhodopseudomonas palustris TIE-1 3-methyladenine DNA glycosylase YP_001991839.1 3115865 R 395960 CDS YP_001991840.1 192291235 6410526 3116635..3117594 1 NC_011004.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3117594 6410526 Rpal_2857 Rhodopseudomonas palustris TIE-1 lipoyl synthase YP_001991840.1 3116635 D 395960 CDS YP_001991841.1 192291236 6410527 3117621..3118094 1 NC_011004.1 PFAM: cyclase/dehydrase; KEGG: nha:Nham_1832 cyclase/dehydrase; cyclase/dehydrase 3118094 6410527 Rpal_2858 Rhodopseudomonas palustris TIE-1 cyclase/dehydrase YP_001991841.1 3117621 D 395960 CDS YP_001991842.1 192291237 6410528 complement(3118394..3119014) 1 NC_011004.1 PFAM: CinA domain protein; KEGG: nha:Nham_1833 CinA-like; CinA domain-containing protein 3119014 6410528 Rpal_2859 Rhodopseudomonas palustris TIE-1 CinA domain-containing protein YP_001991842.1 3118394 R 395960 CDS YP_001991843.1 192291238 6410529 complement(3119017..3120213) 1 NC_011004.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MECDP-synthase; KEGG: nha:Nham_1834 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3120213 6410529 Rpal_2860 Rhodopseudomonas palustris TIE-1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_001991843.1 3119017 R 395960 CDS YP_001991844.1 192291239 6410530 3120487..3121488 1 NC_011004.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: bja:blr4486 nitrogen regulation protein; nifR3 family TIM-barrel protein 3121488 6410530 Rpal_2861 Rhodopseudomonas palustris TIE-1 nifR3 family TIM-barrel protein YP_001991844.1 3120487 D 395960 CDS YP_001991845.1 192291240 6410531 3121485..3122657 1 NC_011004.1 KEGG: bra:BRADO3867 nitrogen regulation protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 3122657 6410531 Rpal_2862 Rhodopseudomonas palustris TIE-1 signal transduction histidine kinase, nitrogen specific, NtrB YP_001991845.1 3121485 D 395960 CDS YP_001991846.1 192291241 6410532 3122667..3124109 1 NC_011004.1 KEGG: bbt:BBta_4070 nitrogen assimilation regulatory protein; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; SMART: ATPase AAA; Fis family transcriptional regulator 3124109 6410532 Rpal_2863 Rhodopseudomonas palustris TIE-1 Fis family transcriptional regulator YP_001991846.1 3122667 D 395960 CDS YP_001991847.1 192291242 6410533 3124269..3126560 1 NC_011004.1 KEGG: nha:Nham_1838 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 3126560 6410533 Rpal_2864 Rhodopseudomonas palustris TIE-1 multi-sensor signal transduction histidine kinase YP_001991847.1 3124269 D 395960 CDS YP_001991848.1 192291243 6410534 3126577..3127944 1 NC_011004.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: bbt:BBta_4072 nitrogen assimilation regulatory protein; Fis family transcriptional regulator 3127944 6410534 Rpal_2865 Rhodopseudomonas palustris TIE-1 Fis family transcriptional regulator YP_001991848.1 3126577 D 395960 CDS YP_001991849.1 192291244 6410535 3127985..3128842 1 NC_011004.1 catalyzes the transamination of D-amino acids and their alpha-keto acids; D-amino acid aminotransferase 3128842 6410535 Rpal_2866 Rhodopseudomonas palustris TIE-1 D-amino acid aminotransferase YP_001991849.1 3127985 D 395960 CDS YP_001991850.1 192291245 6410536 3129024..3129272 1 NC_011004.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 3129272 hfq 6410536 hfq Rhodopseudomonas palustris TIE-1 RNA-binding protein Hfq YP_001991850.1 3129024 D 395960 CDS YP_001991851.1 192291246 6410537 3129284..3130651 1 NC_011004.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: nha:Nham_1842 GTP-binding protein, HSR1-related; GTP-binding proten HflX 3130651 6410537 Rpal_2868 Rhodopseudomonas palustris TIE-1 GTP-binding proten HflX YP_001991851.1 3129284 D 395960 CDS YP_001991852.1 192291247 6410538 3130854..3133595 1 NC_011004.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 3133595 6410538 Rpal_2869 Rhodopseudomonas palustris TIE-1 DNA gyrase subunit A YP_001991852.1 3130854 D 395960 CDS YP_001991853.1 192291248 6410539 complement(3133784..3134041) 1 NC_011004.1 KEGG: nha:Nham_1765 hypothetical protein; hypothetical protein 3134041 6410539 Rpal_2870 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991853.1 3133784 R 395960 CDS YP_001991854.1 192291249 6410540 3134380..3134889 1 NC_011004.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3134889 coaD 6410540 coaD Rhodopseudomonas palustris TIE-1 phosphopantetheine adenylyltransferase YP_001991854.1 3134380 D 395960 CDS YP_001991855.1 192291250 6410541 3134906..3135469 1 NC_011004.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: bbt:BBta_4368 peptidyl-prolyl cis-trans isomerase A (rotamase A); cyclophilin type peptidyl-prolyl cis-trans isomerase 3135469 6410541 Rpal_2872 Rhodopseudomonas palustris TIE-1 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001991855.1 3134906 D 395960 CDS YP_001991856.1 192291251 6410542 3135479..3135922 1 NC_011004.1 KEGG: nha:Nham_1768 hypothetical protein; hypothetical protein 3135922 6410542 Rpal_2873 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991856.1 3135479 D 395960 CDS YP_001991857.1 192291252 6410543 3135898..3136365 1 NC_011004.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: bra:BRADO3995 peptidyl prolyl cis-trans isomerase (rotamase B); cyclophilin type peptidyl-prolyl cis-trans isomerase 3136365 6410543 Rpal_2874 Rhodopseudomonas palustris TIE-1 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001991857.1 3135898 D 395960 CDS YP_001991858.1 192291253 6410544 3136535..3137617 1 NC_011004.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 3137617 queA 6410544 queA Rhodopseudomonas palustris TIE-1 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_001991858.1 3136535 D 395960 CDS YP_001991859.1 192291254 6410545 3137614..3138747 1 NC_011004.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 3138747 tgt 6410545 tgt Rhodopseudomonas palustris TIE-1 queuine tRNA-ribosyltransferase YP_001991859.1 3137614 D 395960 CDS YP_001991860.1 192291255 6410546 complement(3139825..3140448) 1 NC_011004.1 PFAM: helix-turn-helix domain protein; cupin; KEGG: nwi:Nwi_0662 transcriptional regulator, XRE family; XRE family transcriptional regulator 3140448 6410546 Rpal_2877 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001991860.1 3139825 R 395960 CDS YP_001991861.1 192291256 6410547 complement(3140445..3140771) 1 NC_011004.1 hypothetical protein 3140771 6410547 Rpal_2878 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991861.1 3140445 R 395960 CDS YP_001991862.1 192291257 6410548 complement(3141012..3141965) 1 NC_011004.1 KEGG: bra:BRADO5913 ABC transporter substrate-binding protein; aliphatic sulfonates transporter; TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; aliphatic sulfonates ABC transporter periplsmic protein 3141965 6410548 Rpal_2879 Rhodopseudomonas palustris TIE-1 aliphatic sulfonates ABC transporter periplsmic protein YP_001991862.1 3141012 R 395960 CDS YP_001991863.1 192291258 6410549 complement(3142127..3142696) 1 NC_011004.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: bja:bll7007 oxidoreductase; flavin reductase domain-containing protein 3142696 6410549 Rpal_2880 Rhodopseudomonas palustris TIE-1 flavin reductase domain-containing protein YP_001991863.1 3142127 R 395960 CDS YP_001991864.1 192291259 6410550 complement(3142707..3143549) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll7008 aliphatic sulfonate ABC transporter ATP-binding protein; ABC transporter 3143549 6410550 Rpal_2881 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991864.1 3142707 R 395960 CDS YP_001991865.1 192291260 6410551 complement(3143557..3144363) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:bll7009 aliphatic sulfonate ABC transporter permease protein; ABC transporter inner membrane protein 3144363 6410551 Rpal_2882 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001991865.1 3143557 R 395960 CDS YP_001991866.1 192291261 6410552 complement(3144360..3145535) 1 NC_011004.1 catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 3145535 6410552 Rpal_2883 Rhodopseudomonas palustris TIE-1 alkanesulfonate monooxygenase YP_001991866.1 3144360 R 395960 CDS YP_001991867.1 192291262 6410553 complement(3145580..3146527) 1 NC_011004.1 TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: bja:bll7011 ABC transporter aliphatic-sulfonate-binding protein; aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein 3146527 6410553 Rpal_2884 Rhodopseudomonas palustris TIE-1 aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein YP_001991867.1 3145580 R 395960 CDS YP_001991868.1 192291263 6410554 3146974..3148191 1 NC_011004.1 PFAM: radical SAM domain protein; KEGG: rsq:Rsph17025_0775 radical SAM domain protein; radical SAM domain-containing protein 3148191 6410554 Rpal_2885 Rhodopseudomonas palustris TIE-1 radical SAM domain-containing protein YP_001991868.1 3146974 D 395960 CDS YP_001991869.1 192291264 6410555 3148233..3149105 1 NC_011004.1 PFAM: NifH/frxC-family protein; KEGG: rsq:Rsph17025_0774 nitrogenase; nitrogenase 3149105 6410555 Rpal_2886 Rhodopseudomonas palustris TIE-1 nitrogenase YP_001991869.1 3148233 D 395960 CDS YP_001991870.1 192291265 6410556 3149107..3150465 1 NC_011004.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rsq:Rsph17025_0773 oxidoreductase/nitrogenase, component 1; oxidoreductase/nitrogenase component 1 3150465 6410556 Rpal_2887 Rhodopseudomonas palustris TIE-1 oxidoreductase/nitrogenase component 1 YP_001991870.1 3149107 D 395960 CDS YP_001991871.1 192291266 6410557 3150465..3151712 1 NC_011004.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rsq:Rsph17025_0772 nitrogenase; oxidoreductase/nitrogenase component 1 3151712 6410557 Rpal_2888 Rhodopseudomonas palustris TIE-1 oxidoreductase/nitrogenase component 1 YP_001991871.1 3150465 D 395960 CDS YP_001991872.1 192291267 6410558 complement(3151874..3152860) 1 NC_011004.1 SMART: extracellular solute-binding protein family 3; KEGG: bcm:Bcenmc03_6201 ABC nitrate/sulfonate/bicarbonate transporter periplasmic ligand binding protein; family 3 extracellular solute-binding protein 3152860 6410558 Rpal_2889 Rhodopseudomonas palustris TIE-1 family 3 extracellular solute-binding protein YP_001991872.1 3151874 R 395960 CDS YP_001991873.1 192291268 6410559 3153193..3154797 1 NC_011004.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: bbt:BBta_2190 choline dehydrogenase, a flavoprotein; glucose-methanol-choline oxidoreductase 3154797 6410559 Rpal_2890 Rhodopseudomonas palustris TIE-1 glucose-methanol-choline oxidoreductase YP_001991873.1 3153193 D 395960 CDS YP_001991874.1 192291269 6410560 complement(3154887..3155213) 1 NC_011004.1 KEGG: rle:pRL80020 hypothetical protein; hypothetical protein 3155213 6410560 Rpal_2891 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991874.1 3154887 R 395960 CDS YP_001991875.1 192291270 6410561 complement(3155245..3155754) 1 NC_011004.1 PFAM: OsmC family protein; KEGG: bja:blr0920 hypothetical protein; OsmC family protein 3155754 6410561 Rpal_2892 Rhodopseudomonas palustris TIE-1 OsmC family protein YP_001991875.1 3155245 R 395960 CDS YP_001991876.1 192291271 6410562 complement(3155783..3156562) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_7645 sulfonate ABC transporter ATP binding protein; ABC transporter 3156562 6410562 Rpal_2893 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991876.1 3155783 R 395960 CDS YP_001991877.1 192291272 6410563 complement(3156562..3157404) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_7646 sulfonate ABC transporter permease protein; ABC transporter inner membrane protein 3157404 6410563 Rpal_2894 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001991877.1 3156562 R 395960 CDS YP_001991878.1 192291273 6410564 complement(3157528..3158502) 1 NC_011004.1 KEGG: bra:BRADO0531 sulfonate ABC transporter periplasmic binding protein (SsuA/YcbO-like); TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein 3158502 6410564 Rpal_2895 Rhodopseudomonas palustris TIE-1 aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein YP_001991878.1 3157528 R 395960 CDS YP_001991879.1 192291274 6410565 complement(3159052..3160260) 1 NC_011004.1 PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rru:Rru_A0098 cystathionine gamma-synthase; cystathionine gamma-synthase 3160260 6410565 Rpal_2896 Rhodopseudomonas palustris TIE-1 cystathionine gamma-synthase YP_001991879.1 3159052 R 395960 CDS YP_001991880.1 192291275 6410566 complement(3160500..3161534) 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: bbt:BBta_2581 hydrolase; alpha/beta hydrolase fold protein 3161534 6410566 Rpal_2897 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001991880.1 3160500 R 395960 CDS YP_001991881.1 192291276 6410567 3161953..3163614 1 NC_011004.1 PFAM: carboxylesterase type B; KEGG: cak:Caul_0584 carboxylesterase type B; carboxylesterase type B 3163614 6410567 Rpal_2898 Rhodopseudomonas palustris TIE-1 carboxylesterase type B YP_001991881.1 3161953 D 395960 CDS YP_001991882.1 192291277 6410568 3163646..3164668 1 NC_011004.1 PFAM: extracellular solute-binding protein family 3; KEGG: rru:Rru_A0779 extracellular solute-binding protein, family 3; family 3 extracellular solute-binding protein 3164668 6410568 Rpal_2899 Rhodopseudomonas palustris TIE-1 family 3 extracellular solute-binding protein YP_001991882.1 3163646 D 395960 CDS YP_001991883.1 192291278 6410569 3164687..3165856 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: rru:Rru_A0780 ABC transporter inner membrane protein; ABC transporter inner membrane protein 3165856 6410569 Rpal_2900 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001991883.1 3164687 D 395960 CDS YP_001991884.1 192291279 6410570 3165853..3166941 1 NC_011004.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: rru:Rru_A0781 amino acid ABC transporter permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 3166941 6410570 Rpal_2901 Rhodopseudomonas palustris TIE-1 polar amino acid ABC transporter inner membrane subunit YP_001991884.1 3165853 D 395960 CDS YP_001991885.1 192291280 6410571 3167488..3168516 1 NC_011004.1 KEGG: bxe:Bxe_C0117 ABC nitrate/sulfonate/bicarbonate family transporter periplasmic ligand binding protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein 3168516 6410571 Rpal_2902 Rhodopseudomonas palustris TIE-1 nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein YP_001991885.1 3167488 D 395960 CDS YP_001991886.1 192291281 6410572 3168527..3169525 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bam:Bamb_3677 ABC transporter inner membrane protein; ABC transporter inner membrane protein 3169525 6410572 Rpal_2903 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001991886.1 3168527 D 395960 CDS YP_001991887.1 192291282 6410573 3169525..3170337 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mex:Mext_1167 ABC transporter; ABC transporter 3170337 6410573 Rpal_2904 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991887.1 3169525 D 395960 CDS YP_001991888.1 192291283 6410574 3170384..3170626 1 NC_011004.1 hypothetical protein 3170626 6410574 Rpal_2905 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991888.1 3170384 D 395960 CDS YP_001991889.1 192291284 6410575 3171186..3172076 1 NC_011004.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rru:Rru_A0796 radical SAM; radical SAM domain-containing protein 3172076 6410575 Rpal_2906 Rhodopseudomonas palustris TIE-1 radical SAM domain-containing protein YP_001991889.1 3171186 D 395960 CDS YP_001991890.1 192291285 6410576 3172115..3172984 1 NC_011004.1 KEGG: rru:Rru_A0795 nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein; nitrogenase iron protein 3172984 6410576 Rpal_2907 Rhodopseudomonas palustris TIE-1 nitrogenase iron protein YP_001991890.1 3172115 D 395960 CDS YP_001991891.1 192291286 6410577 3173050..3174558 1 NC_011004.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0794 nitrogenase; nitrogenase 3174558 6410577 Rpal_2908 Rhodopseudomonas palustris TIE-1 nitrogenase YP_001991891.1 3173050 D 395960 CDS YP_001991892.1 192291287 6410578 3174570..3175952 1 NC_011004.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0793 nitrogenase; nitrogenase 3175952 6410578 Rpal_2909 Rhodopseudomonas palustris TIE-1 nitrogenase YP_001991892.1 3174570 D 395960 CDS YP_001991893.1 192291288 6410579 3176247..3177551 1 NC_011004.1 PFAM: FAD dependent oxidoreductase; KEGG: bbt:BBta_4331 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3177551 6410579 Rpal_2910 Rhodopseudomonas palustris TIE-1 FAD dependent oxidoreductase YP_001991893.1 3176247 D 395960 CDS YP_001991894.1 192291289 6410580 complement(3177599..3178084) 1 NC_011004.1 KEGG: bte:BTH_II1547 L-2-amino-thiazoline-4-carboxylic acid hydrolase; L-2-amino-thiazoline-4-carboxylic acid hydrolase 3178084 6410580 Rpal_2911 Rhodopseudomonas palustris TIE-1 L-2-amino-thiazoline-4-carboxylic acid hydrolase YP_001991894.1 3177599 R 395960 CDS YP_001991895.1 192291290 6410581 complement(3178081..3178803) 1 NC_011004.1 PFAM: isochorismatase hydrolase; KEGG: cya:CYA_1918 isochorismatase family protein; isochorismatase hydrolase 3178803 6410581 Rpal_2912 Rhodopseudomonas palustris TIE-1 isochorismatase hydrolase YP_001991895.1 3178081 R 395960 CDS YP_001991896.1 192291291 6410582 complement(3178800..3180401) 1 NC_011004.1 PFAM: extracellular solute-binding protein family 5; KEGG: rru:Rru_A2014 twin-arginine translocation pathway signal; family 5 extracellular solute-binding protein 3180401 6410582 Rpal_2913 Rhodopseudomonas palustris TIE-1 family 5 extracellular solute-binding protein YP_001991896.1 3178800 R 395960 CDS YP_001991897.1 192291292 6410583 3180627..3181517 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spe:Spro_2548 transcriptional regulator, LysR family; LysR family transcriptional regulator 3181517 6410583 Rpal_2914 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001991897.1 3180627 D 395960 CDS YP_001991898.1 192291293 6410584 complement(3181578..3183200) 1 NC_011004.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO3960 ABC transporter ATP-binding protein; ABC transporter 3183200 6410584 Rpal_2915 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991898.1 3181578 R 395960 CDS YP_001991899.1 192291294 6410585 complement(3183197..3184027) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_4329 ABC transporter permease protein; ABC transporter inner membrane protein 3184027 6410585 Rpal_2916 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001991899.1 3183197 R 395960 CDS YP_001991900.1 192291295 6410586 complement(3184031..3185008) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO3958 ABC transporter permease protein; ABC transporter inner membrane protein 3185008 6410586 Rpal_2917 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001991900.1 3184031 R 395960 CDS YP_001991901.1 192291296 6410587 complement(3185033..3186649) 1 NC_011004.1 PFAM: extracellular solute-binding protein family 5; KEGG: bra:BRADO3957 ABC transporter extracellular substrate binding protein; family 5 extracellular solute-binding protein 3186649 6410587 Rpal_2918 Rhodopseudomonas palustris TIE-1 family 5 extracellular solute-binding protein YP_001991901.1 3185033 R 395960 CDS YP_001991902.1 192291297 6410588 complement(3186819..3187985) 1 NC_011004.1 KEGG: xau:Xaut_4367 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 3187985 6410588 Rpal_2919 Rhodopseudomonas palustris TIE-1 amidohydrolase YP_001991902.1 3186819 R 395960 CDS YP_001991903.1 192291298 6410589 complement(3188015..3188797) 1 NC_011004.1 KEGG: dac:Daci_1059 hypothetical protein; hypothetical protein 3188797 6410589 Rpal_2920 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991903.1 3188015 R 395960 CDS YP_001991904.1 192291299 6410590 complement(3189252..3189467) 1 NC_011004.1 KEGG: bbt:BBta_4362 hypothetical protein; hypothetical protein 3189467 6410590 Rpal_2921 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991904.1 3189252 R 395960 CDS YP_001991905.1 192291300 6410591 3189894..3190139 1 NC_011004.1 KEGG: nha:Nham_1774 hypothetical protein; hypothetical protein 3190139 6410591 Rpal_2922 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991905.1 3189894 D 395960 CDS YP_001991906.1 192291301 6410592 complement(3190136..3191026) 1 NC_011004.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr4679 hypothetical protein; hypothetical protein 3191026 6410592 Rpal_2923 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991906.1 3190136 R 395960 CDS YP_001991907.1 192291302 6410593 3191216..3191617 1 NC_011004.1 PFAM: Endoribonuclease L-PSP; KEGG: bja:bll4678 hypothetical protein; endoribonuclease L-PSP 3191617 6410593 Rpal_2924 Rhodopseudomonas palustris TIE-1 endoribonuclease L-PSP YP_001991907.1 3191216 D 395960 CDS YP_001991908.1 192291303 6410594 3191708..3191911 1 NC_011004.1 KEGG: bbt:BBta_4350 hypothetical protein; hypothetical protein 3191911 6410594 Rpal_2925 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991908.1 3191708 D 395960 CDS YP_001991909.1 192291304 6410595 complement(3192025..3192204) 1 NC_011004.1 PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1408 antenna complex, alpha/beta subunit; antenna complex alpha/beta subunit 3192204 6410595 Rpal_2926 Rhodopseudomonas palustris TIE-1 antenna complex alpha/beta subunit YP_001991909.1 3192025 R 395960 CDS YP_001991910.1 192291305 6410596 complement(3192230..3192373) 1 NC_011004.1 PFAM: antenna complex alpha/beta subunit; KEGG: bbt:BBta_3081 light harvesting protein B-800-850; antenna complex alpha/beta subunit 3192373 6410596 Rpal_2927 Rhodopseudomonas palustris TIE-1 antenna complex alpha/beta subunit YP_001991910.1 3192230 R 395960 CDS YP_001991911.1 192291306 6410598 complement(3192962..3195796) 1 NC_011004.1 PFAM: glycosyl transferase family 2; KEGG: nha:Nham_1779 glycosyl transferase, family 2; family 2 glycosyl transferase 3195796 6410598 Rpal_2928 Rhodopseudomonas palustris TIE-1 family 2 glycosyl transferase YP_001991911.1 3192962 R 395960 CDS YP_001991912.1 192291307 6410599 complement(3195984..3196562) 1 NC_011004.1 KEGG: nha:Nham_1780 hypothetical protein; hypothetical protein 3196562 6410599 Rpal_2929 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991912.1 3195984 R 395960 CDS YP_001991913.1 192291308 6410600 3196849..3198459 1 NC_011004.1 KEGG: bra:BRADO3757 beta (1-6) glucans synthase, NdvC-like; beta (1-6) glucans synthase, NdvC-like protein 3198459 6410600 Rpal_2930 Rhodopseudomonas palustris TIE-1 beta (1-6) glucans synthase, NdvC-like protein YP_001991913.1 3196849 D 395960 CDS YP_001991914.1 192291309 6410601 complement(3198419..3198799) 1 NC_011004.1 KEGG: nha:Nham_1782 hypothetical protein; hypothetical protein 3198799 6410601 Rpal_2931 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991914.1 3198419 R 395960 CDS YP_001991915.1 192291310 6410602 complement(3198873..3200264) 1 NC_011004.1 PFAM: Sporulation domain protein; KEGG: nha:Nham_1783 hypothetical protein; sporulation domain-containing protein 3200264 6410602 Rpal_2932 Rhodopseudomonas palustris TIE-1 sporulation domain-containing protein YP_001991915.1 3198873 R 395960 CDS YP_001991916.1 192291311 6410603 3200432..3201790 1 NC_011004.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 3201790 glmU 6410603 glmU Rhodopseudomonas palustris TIE-1 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_001991916.1 3200432 D 395960 CDS YP_001991917.1 192291312 6410604 3201917..3203743 1 NC_011004.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 3203743 6410604 Rpal_2934 Rhodopseudomonas palustris TIE-1 glucosamine--fructose-6-phosphate aminotransferase YP_001991917.1 3201917 D 395960 CDS YP_001991918.1 192291313 6410605 3204001..3204804 1 NC_011004.1 PFAM: protein of unknown function DUF502; KEGG: nha:Nham_2056 protein of unknown function DUF502; hypothetical protein 3204804 6410605 Rpal_2935 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991918.1 3204001 D 395960 CDS YP_001991919.1 192291314 6410606 complement(3204835..3206937) 1 NC_011004.1 PFAM: helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: nha:Nham_2055 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 3206937 6410606 Rpal_2936 Rhodopseudomonas palustris TIE-1 DEAD/DEAH box helicase YP_001991919.1 3204835 R 395960 CDS YP_001991920.1 192291315 6410607 3207092..3207382 1 NC_011004.1 PFAM: protein of unknown function DUF339; KEGG: bja:bsl4602 hypothetical protein; hypothetical protein 3207382 6410607 Rpal_2937 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991920.1 3207092 D 395960 CDS YP_001991921.1 192291316 6410608 3207379..3210897 1 NC_011004.1 KEGG: bra:BRADO3771 transcription repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 3210897 6410608 Rpal_2938 Rhodopseudomonas palustris TIE-1 transcription-repair coupling factor YP_001991921.1 3207379 D 395960 CDS YP_001991922.1 192291317 6410609 complement(3211041..3212273) 1 NC_011004.1 KEGG: nha:Nham_2052 hypothetical protein; diguanylate cyclase 3212273 6410609 Rpal_2939 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001991922.1 3211041 R 395960 CDS YP_001991923.1 192291318 6410610 complement(3212322..3213857) 1 NC_011004.1 KEGG: bra:BRADO3775 acid-CoA ligase; acid-CoA ligase 3213857 6410610 Rpal_2940 Rhodopseudomonas palustris TIE-1 acid-CoA ligase YP_001991923.1 3212322 R 395960 CDS YP_001991924.1 192291319 6410611 complement(3213862..3215742) 1 NC_011004.1 PFAM: extracellular solute-binding protein family 5; KEGG: nwi:Nwi_1510 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 3215742 6410611 Rpal_2941 Rhodopseudomonas palustris TIE-1 family 5 extracellular solute-binding protein YP_001991924.1 3213862 R 395960 CDS YP_001991925.1 192291320 6410612 3215961..3216707 1 NC_011004.1 PFAM: Invasion associated locus B family protein; KEGG: bja:bll4589 hypothetical protein; invasion associated locus B family protein 3216707 6410612 Rpal_2942 Rhodopseudomonas palustris TIE-1 invasion associated locus B family protein YP_001991925.1 3215961 D 395960 CDS YP_001991926.1 192291321 6410613 complement(3216793..3217362) 1 NC_011004.1 hypothetical protein 3217362 6410613 Rpal_2943 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991926.1 3216793 R 395960 CDS YP_001991927.1 192291322 6410614 complement(3217511..3217843) 1 NC_011004.1 TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: bja:blr4588 hypothetical protein; hemimethylated DNA binding protein 3217843 6410614 Rpal_2944 Rhodopseudomonas palustris TIE-1 hemimethylated DNA binding protein YP_001991927.1 3217511 R 395960 CDS YP_001991928.1 192291323 6410615 3217966..3218922 1 NC_011004.1 PFAM: auxin efflux carrier; KEGG: bja:bll4587 malonate transporter; auxin efflux carrier 3218922 6410615 Rpal_2945 Rhodopseudomonas palustris TIE-1 auxin efflux carrier YP_001991928.1 3217966 D 395960 CDS YP_001991929.1 192291324 6410616 complement(3218929..3220125) 1 NC_011004.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bja:blr4586 2-octaprenyl-6-methoxyphenyl hydroxylase; 2-octaprenyl-6-methoxyphenyl hydroxylase 3220125 6410616 Rpal_2946 Rhodopseudomonas palustris TIE-1 2-octaprenyl-6-methoxyphenyl hydroxylase YP_001991929.1 3218929 R 395960 CDS YP_001991930.1 192291325 6410617 3220259..3220993 1 NC_011004.1 KEGG: nwi:Nwi_1506 CDP-alcohol phosphatidyltransferase; phosphatidylcholine synthase 3220993 6410617 Rpal_2947 Rhodopseudomonas palustris TIE-1 phosphatidylcholine synthase YP_001991930.1 3220259 D 395960 CDS YP_001991931.1 192291326 6410618 3220990..3221712 1 NC_011004.1 PFAM: Integral membrane protein TerC; KEGG: bja:bll4584 hypothetical protein; integral membrane protein TerC 3221712 6410618 Rpal_2948 Rhodopseudomonas palustris TIE-1 integral membrane protein TerC YP_001991931.1 3220990 D 395960 CDS YP_001991932.1 192291327 6410619 3221799..3222773 1 NC_011004.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:bll4583 quinone oxidoreductase; alcohol dehydrogenase zinc-binding domain-containing protein 3222773 6410619 Rpal_2949 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase zinc-binding domain-containing protein YP_001991932.1 3221799 D 395960 CDS YP_001991933.1 192291328 6410620 complement(3222952..3224277) 1 NC_011004.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 3224277 rimO 6410620 rimO Rhodopseudomonas palustris TIE-1 30S ribosomal protein S12 methylthiotransferase YP_001991933.1 3222952 R 395960 CDS YP_001991934.1 192291329 6410621 complement(3224676..3225590) 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_1913 transcriptional regulator, LysR family; LysR family transcriptional regulator 3225590 6410621 Rpal_2951 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001991934.1 3224676 R 395960 CDS YP_001991935.1 192291330 6410622 3225692..3226648 1 NC_011004.1 PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; KEGG: mms:mma_3086 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component; nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein 3226648 6410622 Rpal_2952 Rhodopseudomonas palustris TIE-1 nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein YP_001991935.1 3225692 D 395960 CDS YP_001991936.1 192291331 6410623 3226656..3227540 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: mms:mma_3085 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein 3227540 6410623 Rpal_2953 Rhodopseudomonas palustris TIE-1 nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein YP_001991936.1 3226656 D 395960 CDS YP_001991937.1 192291332 6410624 3227533..3228351 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mms:mma_3084 sulfonate/nitrate transport system ATP-binding protein; ABC transporter 3228351 6410624 Rpal_2954 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001991937.1 3227533 D 395960 CDS YP_001991938.1 192291333 6410625 3228353..3229204 1 NC_011004.1 KEGG: mms:mma_3083 hypothetical protein; hypothetical protein 3229204 6410625 Rpal_2955 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991938.1 3228353 D 395960 CDS YP_001991939.1 192291334 6410626 complement(3229221..3229985) 1 NC_011004.1 PFAM: LamB/YcsF family protein; KEGG: bbt:BBta_4134 hypothetical protein; LamB/YcsF family protein 3229985 6410626 Rpal_2956 Rhodopseudomonas palustris TIE-1 LamB/YcsF family protein YP_001991939.1 3229221 R 395960 CDS YP_001991940.1 192291335 6410627 complement(3230013..3231023) 1 NC_011004.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: nha:Nham_2041 allophanate hydrolase subunit 2; urea amidolyase 3231023 6410627 Rpal_2957 Rhodopseudomonas palustris TIE-1 urea amidolyase YP_001991940.1 3230013 R 395960 CDS YP_001991941.1 192291336 6410628 complement(3231020..3231748) 1 NC_011004.1 PFAM: Allophanate hydrolase subunit 1; KEGG: nha:Nham_2040 hypothetical protein; allophanate hydrolase subunit 1 3231748 6410628 Rpal_2958 Rhodopseudomonas palustris TIE-1 allophanate hydrolase subunit 1 YP_001991941.1 3231020 R 395960 CDS YP_001991942.1 192291337 6410629 3231969..3232682 1 NC_011004.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: bbt:BBta_4131 hypothetical protein; hypothetical protein 3232682 6410629 Rpal_2959 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991942.1 3231969 D 395960 CDS YP_001991943.1 192291338 6410630 3232695..3233102 1 NC_011004.1 PFAM: cupin; KEGG: bra:BRADO3800 hypothetical protein; cupin 3233102 6410630 Rpal_2960 Rhodopseudomonas palustris TIE-1 cupin YP_001991943.1 3232695 D 395960 CDS YP_001991944.1 192291339 6410631 3233234..3234124 1 NC_011004.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 3234124 6410631 Rpal_2961 Rhodopseudomonas palustris TIE-1 dihydrodipicolinate synthase YP_001991944.1 3233234 D 395960 CDS YP_001991945.1 192291340 6410632 3234135..3234614 1 NC_011004.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3234614 mscL 6410632 mscL Rhodopseudomonas palustris TIE-1 large-conductance mechanosensitive channel YP_001991945.1 3234135 D 395960 CDS YP_001991946.1 192291341 6410633 3234652..3235125 1 NC_011004.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 3235125 smpB 6410633 smpB Rhodopseudomonas palustris TIE-1 SsrA-binding protein YP_001991946.1 3234652 D 395960 CDS YP_001991947.1 192291342 6410634 3235148..3235726 1 NC_011004.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bja:bll5069 BcpB protein; redoxin domain-containing protein 3235726 6410634 Rpal_2964 Rhodopseudomonas palustris TIE-1 redoxin domain-containing protein YP_001991947.1 3235148 D 395960 CDS YP_001991948.1 192291343 6410635 complement(3235839..3236513) 1 NC_011004.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: nha:Nham_2258 uracil-DNA glycosylase superfamily; uracil-DNA glycosylase superfamily 3236513 6410635 Rpal_2965 Rhodopseudomonas palustris TIE-1 uracil-DNA glycosylase superfamily YP_001991948.1 3235839 R 395960 CDS YP_001991949.1 192291344 6410636 complement(3236519..3237169) 1 NC_011004.1 PFAM: protein of unknown function DUF88; KEGG: bja:blr5067 hypothetical protein; hypothetical protein 3237169 6410636 Rpal_2966 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991949.1 3236519 R 395960 CDS YP_001991950.1 192291345 6410637 3237516..3237908 1 NC_011004.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3237908 6410637 Rpal_2967 Rhodopseudomonas palustris TIE-1 DNA-directed RNA polymerase subunit omega YP_001991950.1 3237516 D 395960 CDS YP_001991951.1 192291346 6410638 3238174..3240456 1 NC_011004.1 KEGG: bra:BRADO4468 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase); TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 3240456 6410638 Rpal_2968 Rhodopseudomonas palustris TIE-1 (p)ppGpp synthetase I SpoT/RelA YP_001991951.1 3238174 D 395960 CDS YP_001991952.1 192291347 6410639 3240606..3241370 1 NC_011004.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 3241370 6410639 Rpal_2969 Rhodopseudomonas palustris TIE-1 pyridoxine 5'-phosphate synthase YP_001991952.1 3240606 D 395960 CDS YP_001991953.1 192291348 6410640 3241367..3241807 1 NC_011004.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 3241807 acpS 6410640 acpS Rhodopseudomonas palustris TIE-1 4'-phosphopantetheinyl transferase YP_001991953.1 3241367 D 395960 CDS YP_001991954.1 192291349 6410641 3242049..3242807 1 NC_011004.1 KEGG: nwi:Nwi_1919 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 3242807 6410641 Rpal_2971 Rhodopseudomonas palustris TIE-1 signal peptidase I YP_001991954.1 3242049 D 395960 CDS YP_001991955.1 192291350 6410642 3242804..3243622 1 NC_011004.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: bra:BRADO4463 ribonuclease III (modular protein); ribonuclease III 3243622 6410642 Rpal_2972 Rhodopseudomonas palustris TIE-1 ribonuclease III YP_001991955.1 3242804 D 395960 CDS YP_001991956.1 192291351 6410643 3243615..3244538 1 NC_011004.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 3244538 era 6410643 era Rhodopseudomonas palustris TIE-1 GTP-binding protein Era YP_001991956.1 3243615 D 395960 CDS YP_001991957.1 192291352 6410644 3244535..3244936 1 NC_011004.1 KEGG: bja:bll5059 hypothetical protein; hypothetical protein 3244936 6410644 Rpal_2974 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991957.1 3244535 D 395960 CDS YP_001991958.1 192291353 6410645 3244979..3245731 1 NC_011004.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 3245731 recO 6410645 recO Rhodopseudomonas palustris TIE-1 DNA repair protein RecO YP_001991958.1 3244979 D 395960 CDS YP_001991959.1 192291354 6410646 complement(3245771..3246640) 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: pna:Pnap_0622 NmrA family protein; NmrA family protein 3246640 6410646 Rpal_2976 Rhodopseudomonas palustris TIE-1 NmrA family protein YP_001991959.1 3245771 R 395960 CDS YP_001991960.1 192291355 6410647 3246723..3247235 1 NC_011004.1 PFAM: helix-turn-helix HxlR type; KEGG: mrd:Mrad2831_0163 transcriptional regulator, HxlR family; HxlR family transcriptional regulator 3247235 6410647 Rpal_2977 Rhodopseudomonas palustris TIE-1 HxlR family transcriptional regulator YP_001991960.1 3246723 D 395960 CDS YP_001991961.1 192291356 6410648 3247245..3249506 1 NC_011004.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3249506 6410648 Rpal_2978 Rhodopseudomonas palustris TIE-1 DNA topoisomerase IV subunit A YP_001991961.1 3247245 D 395960 CDS YP_001991962.1 192291357 6410649 3249592..3251022 1 NC_011004.1 PFAM: Citrate transporter; KEGG: bja:bll7122 hypothetical protein; citrate transporter 3251022 6410649 Rpal_2979 Rhodopseudomonas palustris TIE-1 citrate transporter YP_001991962.1 3249592 D 395960 CDS YP_001991963.1 192291358 6410650 complement(3251036..3251233) 1 NC_011004.1 hypothetical protein 3251233 6410650 Rpal_2980 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991963.1 3251036 R 395960 CDS YP_001991964.1 192291359 6410651 3251507..3252859 1 NC_011004.1 TIGRFAM: Mn2+/Fe2+ transporter NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: bra:BRADO4439 manganese transport protein MntH; manganese transport protein MntH 3252859 6410651 Rpal_2981 Rhodopseudomonas palustris TIE-1 manganese transport protein MntH YP_001991964.1 3251507 D 395960 CDS YP_001991965.1 192291360 6410652 complement(3252919..3253740) 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; cupin; KEGG: rru:Rru_A1951 transcriptional regulator, AraC family; AraC family transcriptional regulator 3253740 6410652 Rpal_2982 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001991965.1 3252919 R 395960 CDS YP_001991966.1 192291361 6410653 3253847..3255940 1 NC_011004.1 PFAM: fusaric acid resistance protein conserved region; KEGG: rru:Rru_A1952 fusaric acid resistance protein conserved region; fusaric acid resistance protein 3255940 6410653 Rpal_2983 Rhodopseudomonas palustris TIE-1 fusaric acid resistance protein YP_001991966.1 3253847 D 395960 CDS YP_001991967.1 192291362 6410654 3255930..3256145 1 NC_011004.1 PFAM: protein of unknown function DUF1656; KEGG: rru:Rru_A1953 hypothetical protein; hypothetical protein 3256145 6410654 Rpal_2984 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991967.1 3255930 D 395960 CDS YP_001991968.1 192291363 6410655 3256142..3257044 1 NC_011004.1 PFAM: secretion protein HlyD family protein; KEGG: rru:Rru_A1954 secretion protein HlyD; secretion protein HlyD family protein 3257044 6410655 Rpal_2985 Rhodopseudomonas palustris TIE-1 secretion protein HlyD family protein YP_001991968.1 3256142 D 395960 CDS YP_001991969.1 192291364 6410656 complement(3257136..3257912) 1 NC_011004.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 3257912 6410656 Rpal_2986 Rhodopseudomonas palustris TIE-1 arginyl-tRNA-protein transferase YP_001991969.1 3257136 R 395960 CDS YP_001991970.1 192291365 6410657 complement(3257981..3258508) 1 NC_011004.1 PFAM: RDD domain containing protein; KEGG: nha:Nham_2241 hypothetical protein; RDD domain-containing protein 3258508 6410657 Rpal_2987 Rhodopseudomonas palustris TIE-1 RDD domain-containing protein YP_001991970.1 3257981 R 395960 CDS YP_001991971.1 192291366 6410658 complement(3258666..3259718) 1 NC_011004.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 3259718 6410658 Rpal_2988 Rhodopseudomonas palustris TIE-1 delta-aminolevulinic acid dehydratase YP_001991971.1 3258666 R 395960 CDS YP_001991972.1 192291367 6410659 3259912..3260376 1 NC_011004.1 KEGG: bbt:BBta_4654 membrane protein of unknown function; hypothetical protein 3260376 6410659 Rpal_2989 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991972.1 3259912 D 395960 CDS YP_001991973.1 192291368 6410660 3260454..3262019 1 NC_011004.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 3262019 6410660 Rpal_2990 Rhodopseudomonas palustris TIE-1 acyl-CoA synthetase YP_001991973.1 3260454 D 395960 CDS YP_001991974.1 192291369 6410661 3262372..3262890 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: bbt:BBta_4653 transcriptional regulatory protein, MarR family; MarR family transcriptional regulator 3262890 6410661 Rpal_2991 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001991974.1 3262372 D 395960 CDS YP_001991975.1 192291370 6410662 3263104..3263331 1 NC_011004.1 KEGG: bja:bsl5035 hypothetical protein; hypothetical protein 3263331 6410662 Rpal_2992 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991975.1 3263104 D 395960 CDS YP_001991976.1 192291371 6410663 3263348..3263563 1 NC_011004.1 KEGG: bja:bsl5034 hypothetical protein; hypothetical protein 3263563 6410663 Rpal_2993 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991976.1 3263348 D 395960 CDS YP_001991977.1 192291372 6410664 3263578..3264144 1 NC_011004.1 KEGG: bbt:BBta_3895 hypothetical protein; hypothetical protein 3264144 6410664 Rpal_2994 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991977.1 3263578 D 395960 CDS YP_001991978.1 192291373 6410665 3264200..3264601 1 NC_011004.1 PFAM: globin; KEGG: oan:Oant_1478 sec-independent protein translocase protein TatC; globin 3264601 6410665 Rpal_2995 Rhodopseudomonas palustris TIE-1 globin YP_001991978.1 3264200 D 395960 CDS YP_001991979.1 192291374 6410666 complement(3264749..3265621) 1 NC_011004.1 YghU; B2989; one of eight glutathione transferase proteins from E. coli; glutathione S-transferase 3265621 6410666 Rpal_2996 Rhodopseudomonas palustris TIE-1 glutathione S-transferase YP_001991979.1 3264749 R 395960 CDS YP_001991980.1 192291375 6410667 3265888..3266094 1 NC_011004.1 hypothetical protein 3266094 6410667 Rpal_2997 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991980.1 3265888 D 395960 CDS YP_001991981.1 192291376 6410668 3266280..3267332 1 NC_011004.1 hypothetical protein 3267332 6410668 Rpal_2998 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991981.1 3266280 D 395960 CDS YP_001991982.1 192291377 6410669 3267335..3268054 1 NC_011004.1 PFAM: methyltransferase type 11; KEGG: sgl:SG0905 biotin synthesis protein BioC; type 11 methyltransferase 3268054 6410669 Rpal_2999 Rhodopseudomonas palustris TIE-1 type 11 methyltransferase YP_001991982.1 3267335 D 395960 CDS YP_001991983.1 192291378 6410672 complement(3269581..3269862) 1 NC_011004.1 PFAM: plasmid stabilization system; KEGG: eba:ebB110 protein of the plasmid stabilization system; plasmid stabilization system protein 3269862 6410672 Rpal_3002 Rhodopseudomonas palustris TIE-1 plasmid stabilization system protein YP_001991983.1 3269581 R 395960 CDS YP_001991984.1 192291379 6410673 complement(3269859..3270146) 1 NC_011004.1 KEGG: ccr:CC_2879 hypothetical protein; hypothetical protein 3270146 6410673 Rpal_3003 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991984.1 3269859 R 395960 CDS YP_001991985.1 192291380 6410674 3270499..3271797 1 NC_011004.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3271797 glyA 6410674 glyA Rhodopseudomonas palustris TIE-1 serine hydroxymethyltransferase YP_001991985.1 3270499 D 395960 CDS YP_001991986.1 192291381 6410675 3271900..3272382 1 NC_011004.1 PFAM: ATP-cone domain protein; KEGG: bja:bll5032 hypothetical protein; NrdR family transcriptional regulator 3272382 nrdR 6410675 nrdR Rhodopseudomonas palustris TIE-1 NrdR family transcriptional regulator YP_001991986.1 3271900 D 395960 CDS YP_001991987.1 192291382 6410676 3272379..3273548 1 NC_011004.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: bja:bll5031 riboflavin biosynthesis protein; riboflavin biosynthesis protein RibD 3273548 6410676 Rpal_3006 Rhodopseudomonas palustris TIE-1 riboflavin biosynthesis protein RibD YP_001991987.1 3272379 D 395960 CDS YP_001991988.1 192291383 6410677 3273559..3274167 1 NC_011004.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 3274167 6410677 Rpal_3007 Rhodopseudomonas palustris TIE-1 riboflavin synthase subunit alpha YP_001991988.1 3273559 D 395960 CDS YP_001991989.1 192291384 6410678 3274297..3274788 1 NC_011004.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 3274788 ribH 6410678 ribH Rhodopseudomonas palustris TIE-1 6,7-dimethyl-8-ribityllumazine synthase YP_001991989.1 3274297 D 395960 CDS YP_001991990.1 192291385 6410679 3274794..3275318 1 NC_011004.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 3275318 nusB 6410679 nusB Rhodopseudomonas palustris TIE-1 transcription antitermination protein NusB YP_001991990.1 3274794 D 395960 CDS YP_001991991.1 192291386 6410680 3275433..3276176 1 NC_011004.1 KEGG: mlo:mlr9505 hypothetical protein; hypothetical protein 3276176 6410680 Rpal_3010 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991991.1 3275433 D 395960 CDS YP_001991992.1 192291387 6410681 3276298..3277269 1 NC_011004.1 KEGG: bra:BRADO4424 thiamin-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase 3277269 6410681 Rpal_3011 Rhodopseudomonas palustris TIE-1 thiamine-monophosphate kinase YP_001991992.1 3276298 D 395960 CDS YP_001991993.1 192291388 6410682 3277500..3279620 1 NC_011004.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 3279620 hppA 6410682 hppA Rhodopseudomonas palustris TIE-1 membrane-bound proton-translocating pyrophosphatase YP_001991993.1 3277500 D 395960 CDS YP_001991994.1 192291389 6410683 3279783..3280025 1 NC_011004.1 KEGG: bra:BRADO3464 hypothetical protein; hypothetical protein 3280025 6410683 Rpal_3013 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991994.1 3279783 D 395960 CDS YP_001991995.1 192291390 6410684 3280300..3280458 1 NC_011004.1 KEGG: bbt:BBta_7678 hypothetical protein; hypothetical protein 3280458 6410684 Rpal_3014 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991995.1 3280300 D 395960 CDS YP_001991996.1 192291391 6410685 3280494..3281357 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: noc:Noc_0991 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3281357 6410685 Rpal_3015 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001991996.1 3280494 D 395960 CDS YP_001991997.1 192291392 6410686 complement(3281428..3281913) 1 NC_011004.1 PFAM: SmpA/OmlA domain protein; KEGG: bja:blr5024 hypothetical protein; SmpA/OmlA domain-containing protein 3281913 6410686 Rpal_3016 Rhodopseudomonas palustris TIE-1 SmpA/OmlA domain-containing protein YP_001991997.1 3281428 R 395960 CDS YP_001991998.1 192291393 6410687 3282022..3282558 1 NC_011004.1 PFAM: Ubiquinol-cytochrome C chaperone; KEGG: nha:Nham_1583 ubiquinol-cytochrome C chaperone; ubiquinol-cytochrome C chaperone 3282558 6410687 Rpal_3017 Rhodopseudomonas palustris TIE-1 ubiquinol-cytochrome C chaperone YP_001991998.1 3282022 D 395960 CDS YP_001991999.1 192291394 6410688 3282576..3283142 1 NC_011004.1 KEGG: bra:BRADO4419 hypothetical protein; hypothetical protein 3283142 6410688 Rpal_3018 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001991999.1 3282576 D 395960 CDS YP_001992000.1 192291395 6410689 3283383..3284444 1 NC_011004.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 3284444 6410689 Rpal_3019 Rhodopseudomonas palustris TIE-1 glycerol-3-phosphate acyltransferase PlsX YP_001992000.1 3283383 D 395960 CDS YP_001992001.1 192291396 6410690 3284441..3285418 1 NC_011004.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 3285418 6410690 Rpal_3020 Rhodopseudomonas palustris TIE-1 3-oxoacyl-ACP synthase YP_001992001.1 3284441 D 395960 CDS YP_001992002.1 192291397 6410691 3285552..3285908 1 NC_011004.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 3285908 ihfA 6410691 ihfA Rhodopseudomonas palustris TIE-1 integration host factor subunit alpha YP_001992002.1 3285552 D 395960 CDS YP_001992003.1 192291398 6410692 3285923..3286675 1 NC_011004.1 PFAM: regulatory protein MerR; KEGG: bja:bll5018 hypothetical protein; MerR family transcriptional regulator 3286675 6410692 Rpal_3022 Rhodopseudomonas palustris TIE-1 MerR family transcriptional regulator YP_001992003.1 3285923 D 395960 CDS YP_001992004.1 192291399 6410694 complement(3287119..3287328) 1 NC_011004.1 hypothetical protein 3287328 6410694 Rpal_3023 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992004.1 3287119 R 395960 CDS YP_001992005.1 192291400 6410695 complement(3287325..3287492) 1 NC_011004.1 hypothetical protein 3287492 6410695 Rpal_3024 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992005.1 3287325 R 395960 CDS YP_001992006.1 192291401 6410696 complement(3287489..3288544) 1 NC_011004.1 PFAM: integrase family protein; KEGG: bja:blr8004 probable site-specific integrase/recombinase; integrase family protein 3288544 6410696 Rpal_3025 Rhodopseudomonas palustris TIE-1 integrase family protein YP_001992006.1 3287489 R 395960 CDS YP_001992007.1 192291402 6410697 complement(3288516..3288761) 1 NC_011004.1 KEGG: xau:Xaut_3429 hypothetical protein; hypothetical protein 3288761 6410697 Rpal_3026 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992007.1 3288516 R 395960 CDS YP_001992008.1 192291403 6410698 complement(3288758..3289210) 1 NC_011004.1 hypothetical protein 3289210 6410698 Rpal_3027 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992008.1 3288758 R 395960 CDS YP_001992009.1 192291404 6410699 complement(3289212..3289610) 1 NC_011004.1 KEGG: mlo:mll7975 hypothetical protein; hypothetical protein 3289610 6410699 Rpal_3028 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992009.1 3289212 R 395960 CDS YP_001992010.1 192291405 6410700 complement(3289607..3289858) 1 NC_011004.1 KEGG: rsp:RSP_4227 hypothetical protein; hypothetical protein 3289858 6410700 Rpal_3029 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992010.1 3289607 R 395960 CDS YP_001992011.1 192291406 6410701 complement(3289855..3290271) 1 NC_011004.1 PFAM: NinB family protein; KEGG: aha:AHA_2039 NinB protein; NinB family protein 3290271 6410701 Rpal_3030 Rhodopseudomonas palustris TIE-1 NinB family protein YP_001992011.1 3289855 R 395960 CDS YP_001992012.1 192291407 6410702 complement(3290268..3290873) 1 NC_011004.1 PFAM: heat shock protein DnaJ domain protein; KEGG: oan:Oant_1556 heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 3290873 6410702 Rpal_3031 Rhodopseudomonas palustris TIE-1 heat shock protein DnaJ domain-containing protein YP_001992012.1 3290268 R 395960 CDS YP_001992013.1 192291408 6410703 complement(3291088..3291714) 1 NC_011004.1 PFAM: exonuclease, phage-type; KEGG: xau:Xaut_3679 hypothetical protein; exonuclease, phage-type 3291714 6410703 Rpal_3032 Rhodopseudomonas palustris TIE-1 exonuclease, phage-type YP_001992013.1 3291088 R 395960 CDS YP_001992014.1 192291409 6410704 complement(3291725..3292738) 1 NC_011004.1 KEGG: gox:GOX2479 hypothetical protein; hypothetical protein 3292738 6410704 Rpal_3033 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992014.1 3291725 R 395960 CDS YP_001992015.1 192291410 6410705 complement(3292743..3293534) 1 NC_011004.1 PFAM: ERF family protein; KEGG: rsq:Rsph17025_1819 ERF family protein; ERF family protein 3293534 6410705 Rpal_3034 Rhodopseudomonas palustris TIE-1 ERF family protein YP_001992015.1 3292743 R 395960 CDS YP_001992016.1 192291411 6410706 complement(3293534..3293662) 1 NC_011004.1 hypothetical protein 3293662 6410706 Rpal_3035 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992016.1 3293534 R 395960 CDS YP_001992017.1 192291412 6410707 complement(3293782..3294084) 1 NC_011004.1 hypothetical protein 3294084 6410707 Rpal_3036 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992017.1 3293782 R 395960 CDS YP_001992018.1 192291413 6410708 complement(3294081..3294194) 1 NC_011004.1 hypothetical protein 3294194 6410708 Rpal_3037 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992018.1 3294081 R 395960 CDS YP_001992019.1 192291414 6410709 complement(3294191..3294376) 1 NC_011004.1 hypothetical protein 3294376 6410709 Rpal_3038 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992019.1 3294191 R 395960 CDS YP_001992020.1 192291415 6410710 complement(3294373..3294498) 1 NC_011004.1 hypothetical protein 3294498 6410710 Rpal_3039 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992020.1 3294373 R 395960 CDS YP_001992021.1 192291416 6410711 complement(3294504..3294725) 1 NC_011004.1 hypothetical protein 3294725 6410711 Rpal_3040 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992021.1 3294504 R 395960 CDS YP_001992022.1 192291417 6410712 complement(3294722..3294838) 1 NC_011004.1 hypothetical protein 3294838 6410712 Rpal_3041 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992022.1 3294722 R 395960 CDS YP_001992023.1 192291418 6410713 complement(3294854..3295150) 1 NC_011004.1 hypothetical protein 3295150 6410713 Rpal_3042 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992023.1 3294854 R 395960 CDS YP_001992024.1 192291419 6410714 complement(3295280..3295378) 1 NC_011004.1 hypothetical protein 3295378 6410714 Rpal_3043 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992024.1 3295280 R 395960 CDS YP_001992025.1 192291420 6410715 complement(3295393..3296187) 1 NC_011004.1 PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: gdi:GDI3658 protease; phage repressor 3296187 6410715 Rpal_3044 Rhodopseudomonas palustris TIE-1 phage repressor YP_001992025.1 3295393 R 395960 CDS YP_001992026.1 192291421 6410716 3296316..3296417 1 NC_011004.1 hypothetical protein 3296417 6410716 Rpal_3045 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992026.1 3296316 D 395960 CDS YP_001992027.1 192291422 6410717 3296414..3296788 1 NC_011004.1 hypothetical protein 3296788 6410717 Rpal_3046 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992027.1 3296414 D 395960 CDS YP_001992028.1 192291423 6410718 3296936..3297316 1 NC_011004.1 hypothetical protein 3297316 6410718 Rpal_3047 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992028.1 3296936 D 395960 CDS YP_001992029.1 192291424 6410719 3297346..3298215 1 NC_011004.1 PFAM: Chromosomal replication initiator DnaA domain; KEGG: lhe:lhv_0001 chromosomal replication initiation protein; Chromosomal replication initiator DnaA domain 3298215 6410719 Rpal_3048 Rhodopseudomonas palustris TIE-1 Chromosomal replication initiator DnaA domain YP_001992029.1 3297346 D 395960 CDS YP_001992030.1 192291425 6410720 3298216..3298410 1 NC_011004.1 hypothetical protein 3298410 6410720 Rpal_3049 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992030.1 3298216 D 395960 CDS YP_001992031.1 192291426 6410721 3298410..3299045 1 NC_011004.1 KEGG: nar:Saro_2760 hypothetical protein; hypothetical protein 3299045 6410721 Rpal_3050 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992031.1 3298410 D 395960 CDS YP_001992032.1 192291427 6410722 3299042..3299242 1 NC_011004.1 hypothetical protein 3299242 6410722 Rpal_3051 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992032.1 3299042 D 395960 CDS YP_001992033.1 192291428 6410723 3299297..3300208 1 NC_011004.1 KEGG: bur:Bcep18194_A5241 hypothetical protein; hypothetical protein 3300208 6410723 Rpal_3052 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992033.1 3299297 D 395960 CDS YP_001992034.1 192291429 6410724 3300656..3301144 1 NC_011004.1 hypothetical protein 3301144 6410724 Rpal_3053 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992034.1 3300656 D 395960 CDS YP_001992035.1 192291430 6410725 3301147..3301314 1 NC_011004.1 hypothetical protein 3301314 6410725 Rpal_3054 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992035.1 3301147 D 395960 CDS YP_001992036.1 192291431 6410726 3301321..3301824 1 NC_011004.1 KEGG: mlo:mll0464 bacteriophage packaging protein GP3-like protein; bacteriophage packaging protein GP3-like protein 3301824 6410726 Rpal_3055 Rhodopseudomonas palustris TIE-1 bacteriophage packaging protein GP3-like protein YP_001992036.1 3301321 D 395960 CDS YP_001992037.1 192291432 6410727 3301883..3303148 1 NC_011004.1 KEGG: dac:Daci_1942 phage terminase, large subunit, PBSX family; phage terminase, large subunit, PBSX family 3303148 6410727 Rpal_3056 Rhodopseudomonas palustris TIE-1 phage terminase, large subunit, PBSX family YP_001992037.1 3301883 D 395960 CDS YP_001992038.1 192291433 6410728 3303145..3303765 1 NC_011004.1 hypothetical protein 3303765 6410728 Rpal_3057 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992038.1 3303145 D 395960 CDS YP_001992039.1 192291434 6410729 3303769..3305973 1 NC_011004.1 KEGG: azc:AZC_0840 hypothetical protein; hypothetical protein 3305973 6410729 Rpal_3058 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992039.1 3303769 D 395960 CDS YP_001992040.1 192291435 6410730 3305977..3306396 1 NC_011004.1 KEGG: bbt:BBta_5780 hypothetical protein; hypothetical protein 3306396 6410730 Rpal_3059 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992040.1 3305977 D 395960 CDS YP_001992041.1 192291436 6410731 3306403..3307422 1 NC_011004.1 KEGG: bbt:BBta_5779 hypothetical protein; hypothetical protein 3307422 6410731 Rpal_3060 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992041.1 3306403 D 395960 CDS YP_001992042.1 192291437 6410732 3307423..3308199 1 NC_011004.1 KEGG: bbt:BBta_5778 hypothetical protein; hypothetical protein 3308199 6410732 Rpal_3061 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992042.1 3307423 D 395960 CDS YP_001992043.1 192291438 6410733 3308274..3309239 1 NC_011004.1 KEGG: azc:AZC_0841 hypothetical protein; hypothetical protein 3309239 6410733 Rpal_3062 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992043.1 3308274 D 395960 CDS YP_001992044.1 192291439 6410734 3309418..3310485 1 NC_011004.1 KEGG: azc:AZC_0843 hypothetical protein; hypothetical protein 3310485 6410734 Rpal_3063 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992044.1 3309418 D 395960 CDS YP_001992045.1 192291440 6410735 3310558..3310959 1 NC_011004.1 KEGG: azc:AZC_0844 hypothetical protein; hypothetical protein 3310959 6410735 Rpal_3064 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992045.1 3310558 D 395960 CDS YP_001992046.1 192291441 6410736 3311064..3311702 1 NC_011004.1 KEGG: azc:AZC_0845 hypothetical protein; hypothetical protein 3311702 6410736 Rpal_3065 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992046.1 3311064 D 395960 CDS YP_001992047.1 192291442 6410737 3311702..3313180 1 NC_011004.1 KEGG: bbt:BBta_5777 hypothetical protein; hypothetical protein 3313180 6410737 Rpal_3066 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992047.1 3311702 D 395960 CDS YP_001992048.1 192291443 6410738 3313177..3313491 1 NC_011004.1 KEGG: bbt:BBta_5776 hypothetical protein; hypothetical protein 3313491 6410738 Rpal_3067 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992048.1 3313177 D 395960 CDS YP_001992049.1 192291444 6410739 3313484..3313885 1 NC_011004.1 KEGG: bbt:BBta_5775 hypothetical protein; hypothetical protein 3313885 6410739 Rpal_3068 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992049.1 3313484 D 395960 CDS YP_001992050.1 192291445 6410740 3313885..3314754 1 NC_011004.1 KEGG: bbt:BBta_5772 hypothetical protein; hypothetical protein 3314754 6410740 Rpal_3069 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992050.1 3313885 D 395960 CDS YP_001992051.1 192291446 6410741 3314758..3316623 1 NC_011004.1 KEGG: lma:LmjF35.0520 proteophosphoglycan ppg4; hypothetical protein 3316623 6410741 Rpal_3070 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992051.1 3314758 D 395960 CDS YP_001992052.1 192291447 6410742 3316623..3318791 1 NC_011004.1 KEGG: rle:RL3926 hypothetical protein; hypothetical protein 3318791 6410742 Rpal_3071 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992052.1 3316623 D 395960 CDS YP_001992053.1 192291448 6410743 3319539..3319793 1 NC_011004.1 hypothetical protein 3319793 6410743 Rpal_3072 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992053.1 3319539 D 395960 CDS YP_001992054.1 192291449 6410744 3320015..3320827 1 NC_011004.1 PFAM: BRO domain protein; KEGG: saq:Sare_3791 prophage antirepressor; prophage antirepressor 3320827 6410744 Rpal_3073 Rhodopseudomonas palustris TIE-1 prophage antirepressor YP_001992054.1 3320015 D 395960 CDS YP_001992055.1 192291450 6410745 3320836..3321549 1 NC_011004.1 KEGG: pde:Pden_3770 hypothetical protein; hypothetical protein 3321549 6410745 Rpal_3074 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992055.1 3320836 D 395960 CDS YP_001992056.1 192291451 6410746 3321546..3322526 1 NC_011004.1 KEGG: bbt:BBta_5767 phage tail collar domain; phage tail collar domain 3322526 6410746 Rpal_3075 Rhodopseudomonas palustris TIE-1 phage tail collar domain YP_001992056.1 3321546 D 395960 CDS YP_001992057.1 192291452 6410747 3322561..3322779 1 NC_011004.1 hypothetical protein 3322779 6410747 Rpal_3076 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992057.1 3322561 D 395960 CDS YP_001992058.1 192291453 6410748 3322779..3323312 1 NC_011004.1 PFAM: glycoside hydrolase family 24; KEGG: csa:Csal_1392 glycoside hydrolase, family 24; glycoside hydrolase family protein 3323312 6410748 Rpal_3077 Rhodopseudomonas palustris TIE-1 glycoside hydrolase family protein YP_001992058.1 3322779 D 395960 CDS YP_001992059.1 192291454 6410749 3323316..3323783 1 NC_011004.1 KEGG: nha:Nham_3316 hypothetical protein; hypothetical protein 3323783 6410749 Rpal_3078 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992059.1 3323316 D 395960 CDS YP_001992060.1 192291455 6410750 3323788..3323979 1 NC_011004.1 hypothetical protein 3323979 6410750 Rpal_3079 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992060.1 3323788 D 395960 CDS YP_001992061.1 192291456 6410751 3323976..3324392 1 NC_011004.1 hypothetical protein 3324392 6410751 Rpal_3080 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992061.1 3323976 D 395960 CDS YP_001992062.1 192291457 6410752 complement(3324498..3324632) 1 NC_011004.1 hypothetical protein 3324632 6410752 Rpal_3081 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992062.1 3324498 R 395960 CDS YP_001992063.1 192291458 6410753 complement(3324727..3324990) 1 NC_011004.1 KEGG: bja:bsl4534 hypothetical protein; hypothetical protein 3324990 6410753 Rpal_3082 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992063.1 3324727 R 395960 CDS YP_001992064.1 192291459 6410754 3325713..3325940 1 NC_011004.1 hypothetical protein 3325940 6410754 Rpal_3083 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992064.1 3325713 D 395960 CDS YP_001992065.1 192291460 6410755 3326257..3328551 1 NC_011004.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bra:BRADO2299 ferric siderophore receptor protein precursor; signal peptide; TonB-dependent siderophore receptor 3328551 6410755 Rpal_3084 Rhodopseudomonas palustris TIE-1 TonB-dependent siderophore receptor YP_001992065.1 3326257 D 395960 CDS YP_001992066.1 192291461 6410756 3328711..3329148 1 NC_011004.1 KEGG: bbt:BBta_7560 membrane protein of unknown function; hypothetical protein 3329148 6410756 Rpal_3085 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992066.1 3328711 D 395960 CDS YP_001992067.1 192291462 6410757 complement(3329263..3329580) 1 NC_011004.1 hypothetical protein 3329580 6410757 Rpal_3086 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992067.1 3329263 R 395960 CDS YP_001992068.1 192291463 6410758 3329804..3330772 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll4986 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3330772 6410758 Rpal_3087 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001992068.1 3329804 D 395960 CDS YP_001992069.1 192291464 6410759 3330811..3331596 1 NC_011004.1 PFAM: protein of unknown function DUF169; KEGG: bja:bll4979 hypothetical protein; hypothetical protein 3331596 6410759 Rpal_3088 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992069.1 3330811 D 395960 CDS YP_001992070.1 192291465 6410760 complement(3331756..3333312) 1 NC_011004.1 TIGRFAM: undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: bra:BRADO4231 bacterial sugar transferase family protein; undecaprenyl-phosphate glucose phosphotransferase 3333312 6410760 Rpal_3089 Rhodopseudomonas palustris TIE-1 undecaprenyl-phosphate glucose phosphotransferase YP_001992070.1 3331756 R 395960 CDS YP_001992071.1 192291466 6410761 complement(3333423..3334565) 1 NC_011004.1 PFAM: glycosyl transferase group 1; KEGG: nha:Nham_2465 glycosyl transferase, group 1; group 1 glycosyl transferase 3334565 6410761 Rpal_3090 Rhodopseudomonas palustris TIE-1 group 1 glycosyl transferase YP_001992071.1 3333423 R 395960 CDS YP_001992072.1 192291467 6410762 3334834..3337188 1 NC_011004.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: bja:bll4972 probable succinoglycan transport protein; lipopolysaccharide biosynthesis protein 3337188 6410762 Rpal_3091 Rhodopseudomonas palustris TIE-1 lipopolysaccharide biosynthesis protein YP_001992072.1 3334834 D 395960 CDS YP_001992073.1 192291468 6410763 complement(3337268..3338461) 1 NC_011004.1 KEGG: bra:BRADO4228 conserved hypothetical protein; acyl-CoA N-acyltransferase related protein; hypothetical protein 3338461 6410763 Rpal_3092 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992073.1 3337268 R 395960 CDS YP_001992074.1 192291469 6410764 3338592..3339644 1 NC_011004.1 PFAM: polysaccharide deacetylase; KEGG: bra:BRADO4227 polysaccharide deacetylase; polysaccharide deacetylase 3339644 6410764 Rpal_3093 Rhodopseudomonas palustris TIE-1 polysaccharide deacetylase YP_001992074.1 3338592 D 395960 CDS YP_001992075.1 192291470 6410765 complement(3339710..3340192) 1 NC_011004.1 PFAM: Ferritin Dps family protein; KEGG: eba:ebA1978 DNA-binding ferritin-like protein (oxidative damage protectant); ferritin Dps family protein 3340192 6410765 Rpal_3094 Rhodopseudomonas palustris TIE-1 ferritin Dps family protein YP_001992075.1 3339710 R 395960 CDS YP_001992076.1 192291471 6410766 3340548..3341480 1 NC_011004.1 KEGG: bra:BRADO1425 conserved hypothetical protein; signal peptide; hypothetical protein 3341480 6410766 Rpal_3095 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992076.1 3340548 D 395960 CDS YP_001992077.1 192291472 6410767 complement(3341568..3341780) 1 NC_011004.1 KEGG: bra:BRADO4226 hypothetical protein; hypothetical protein 3341780 6410767 Rpal_3096 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992077.1 3341568 R 395960 CDS YP_001992078.1 192291473 6410768 3341877..3342989 1 NC_011004.1 PFAM: cytochrome oxidase assembly; KEGG: bja:bll4968 cytochrome oxidase assembly factor; cytochrome oxidase assembly 3342989 6410768 Rpal_3097 Rhodopseudomonas palustris TIE-1 cytochrome oxidase assembly YP_001992078.1 3341877 D 395960 CDS YP_001992079.1 192291474 6410769 complement(3343003..3343680) 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: hne:HNE_2415 transcriptional regulator, TetR family; TetR family transcriptional regulator 3343680 6410769 Rpal_3098 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001992079.1 3343003 R 395960 CDS YP_001992080.1 192291475 6410770 complement(3343682..3345421) 1 NC_011004.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: mjl:Mjls_2332 thiamine pyrophosphate enzyme TPP binding domain protein; thiamine pyrophosphate protein TPP binding domain-containing protein 3345421 6410770 Rpal_3099 Rhodopseudomonas palustris TIE-1 thiamine pyrophosphate protein TPP binding domain-containing protein YP_001992080.1 3343682 R 395960 CDS YP_001992081.1 192291476 6410771 3345505..3345921 1 NC_011004.1 KEGG: aby:ABAYE3100 zinc-binding dehydrogenase; hypothetical protein 3345921 6410771 Rpal_3100 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992081.1 3345505 D 395960 CDS YP_001992082.1 192291477 6410772 complement(3346011..3346583) 1 NC_011004.1 PFAM: protein of unknown function DUF1211; KEGG: bbt:BBta_5128 membrane protein of unknown function; hypothetical protein 3346583 6410772 Rpal_3101 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992082.1 3346011 R 395960 CDS YP_001992083.1 192291478 6410773 complement(3346611..3347891) 1 NC_011004.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase 3347891 6410773 Rpal_3102 Rhodopseudomonas palustris TIE-1 O-acetylhomoserine aminocarboxypropyltransferase YP_001992083.1 3346611 R 395960 CDS YP_001992084.1 192291479 6410774 complement(3347986..3348570) 1 NC_011004.1 KEGG: bja:blr4966 hypothetical protein; hypothetical protein 3348570 6410774 Rpal_3103 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992084.1 3347986 R 395960 CDS YP_001992085.1 192291480 6410775 complement(3348720..3349547) 1 NC_011004.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3349547 6410775 Rpal_3104 Rhodopseudomonas palustris TIE-1 enoyl-CoA hydratase YP_001992085.1 3348720 R 395960 CDS YP_001992086.1 192291481 6410776 3349638..3350066 1 NC_011004.1 PFAM: thioesterase superfamily protein; KEGG: bja:bll4964 hypothetical protein; thioesterase superfamily protein 3350066 6410776 Rpal_3105 Rhodopseudomonas palustris TIE-1 thioesterase superfamily protein YP_001992086.1 3349638 D 395960 CDS YP_001992087.1 192291482 6410777 3350222..3350686 1 NC_011004.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3350686 rplM 6410777 rplM Rhodopseudomonas palustris TIE-1 50S ribosomal protein L13 YP_001992087.1 3350222 D 395960 CDS YP_001992088.1 192291483 6410778 3350688..3351170 1 NC_011004.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3351170 rpsI 6410778 rpsI Rhodopseudomonas palustris TIE-1 30S ribosomal protein S9 YP_001992088.1 3350688 D 395960 CDS YP_001992089.1 192291484 6410779 3351445..3352680 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bja:bll4961 hypothetical protein; diguanylate cyclase 3352680 6410779 Rpal_3108 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001992089.1 3351445 D 395960 CDS YP_001992090.1 192291485 6410780 3352759..3353061 1 NC_011004.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bbt:BBta_4588 hypothetical protein; antibiotic biosynthesis monooxygenase 3353061 6410780 Rpal_3109 Rhodopseudomonas palustris TIE-1 antibiotic biosynthesis monooxygenase YP_001992090.1 3352759 D 395960 CDS YP_001992091.1 192291486 6410781 complement(3353045..3354196) 1 NC_011004.1 PFAM: protein of unknown function UPF0118; KEGG: nha:Nham_2235 protein of unknown function UPF0118; hypothetical protein 3354196 6410781 Rpal_3110 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992091.1 3353045 R 395960 CDS YP_001992092.1 192291487 6410782 3354458..3355405 1 NC_011004.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: nha:Nham_2012 rare lipoprotein A; rare lipoprotein A 3355405 6410782 Rpal_3111 Rhodopseudomonas palustris TIE-1 rare lipoprotein A YP_001992092.1 3354458 D 395960 CDS YP_001992093.1 192291488 6410783 complement(3355434..3356381) 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: bja:blr4520 epoxide hydrolase; alpha/beta hydrolase fold protein 3356381 6410783 Rpal_3112 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001992093.1 3355434 R 395960 CDS YP_001992094.1 192291489 6410784 3356526..3357767 1 NC_011004.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: bja:bll4519 penicillin binding protein; serine-type D-Ala-D-Ala carboxypeptidase 3357767 6410784 Rpal_3113 Rhodopseudomonas palustris TIE-1 serine-type D-Ala-D-Ala carboxypeptidase YP_001992094.1 3356526 D 395960 CDS YP_001992095.1 192291490 6410785 3357770..3358462 1 NC_011004.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 3358462 6410785 Rpal_3114 Rhodopseudomonas palustris TIE-1 thymidylate kinase YP_001992095.1 3357770 D 395960 CDS YP_001992096.1 192291491 6410786 3358459..3359514 1 NC_011004.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 3359514 6410786 Rpal_3115 Rhodopseudomonas palustris TIE-1 DNA polymerase III subunit delta' YP_001992096.1 3358459 D 395960 CDS YP_001992097.1 192291492 6410787 3359595..3361139 1 NC_011004.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 3361139 6410787 Rpal_3116 Rhodopseudomonas palustris TIE-1 methionyl-tRNA synthetase YP_001992097.1 3359595 D 395960 CDS YP_001992098.1 192291493 6410788 3361143..3361931 1 NC_011004.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: nwi:Nwi_1461 TatD-related deoxyribonuclease; TatD family hydrolase 3361931 6410788 Rpal_3117 Rhodopseudomonas palustris TIE-1 TatD family hydrolase YP_001992098.1 3361143 D 395960 CDS YP_001992099.1 192291494 6410789 3361957..3362760 1 NC_011004.1 KEGG: nha:Nham_2006 hypothetical protein; hypothetical protein 3362760 6410789 Rpal_3118 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992099.1 3361957 D 395960 CDS YP_001992100.1 192291495 6410790 complement(3362955..3364604) 1 NC_011004.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 3364604 6410790 Rpal_3119 Rhodopseudomonas palustris TIE-1 acyl-CoA synthetase YP_001992100.1 3362955 R 395960 CDS YP_001992101.1 192291496 6410791 complement(3364659..3366542) 1 NC_011004.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbt:BBta_4095 TRAP-type C4-dicarboxylate transport system, fusion of small and large permease proteins (DctQ/DctM domains); TRAP dicarboxylate transporter subunit DctM 3366542 6410791 Rpal_3120 Rhodopseudomonas palustris TIE-1 TRAP dicarboxylate transporter subunit DctM YP_001992101.1 3364659 R 395960 CDS YP_001992102.1 192291497 6410792 complement(3366555..3367574) 1 NC_011004.1 TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:blr4511 probable ABC transporter substrate-binding protein; TRAP dicarboxylate transporter subunit DctP 3367574 6410792 Rpal_3121 Rhodopseudomonas palustris TIE-1 TRAP dicarboxylate transporter subunit DctP YP_001992102.1 3366555 R 395960 CDS YP_001992103.1 192291498 6410793 3368852..3369547 1 NC_011004.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: xau:Xaut_4967 protein of unknown function DUF125 transmembrane; hypothetical protein 3369547 6410793 Rpal_3122 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992103.1 3368852 D 395960 CDS YP_001992104.1 192291499 6410794 complement(3369640..3370977) 1 NC_011004.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: bbr:BB1784 flavocytochrome; Ferric reductase transmembrane protein domain-containing protein 3370977 6410794 Rpal_3123 Rhodopseudomonas palustris TIE-1 Ferric reductase transmembrane protein domain-containing protein YP_001992104.1 3369640 R 395960 CDS YP_001992105.1 192291500 6410795 complement(3371068..3371535) 1 NC_011004.1 KEGG: xau:Xaut_1368 hypothetical protein; hypothetical protein 3371535 6410795 Rpal_3124 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992105.1 3371068 R 395960 CDS YP_001992106.1 192291501 6410796 complement(3371625..3371789) 1 NC_011004.1 KEGG: bja:blr6772 hypothetical protein; hypothetical protein 3371789 6410796 Rpal_3125 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992106.1 3371625 R 395960 CDS YP_001992107.1 192291502 6410797 3372094..3373152 1 NC_011004.1 KEGG: cak:Caul_0471 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; signal transduction histidine kinase 3373152 6410797 Rpal_3126 Rhodopseudomonas palustris TIE-1 signal transduction histidine kinase YP_001992107.1 3372094 D 395960 CDS YP_001992108.1 192291503 6410798 complement(3373183..3373929) 1 NC_011004.1 PFAM: methyltransferase type 11; KEGG: gur:Gura_3509 methyltransferase type 11; type 11 methyltransferase 3373929 6410798 Rpal_3127 Rhodopseudomonas palustris TIE-1 type 11 methyltransferase YP_001992108.1 3373183 R 395960 CDS YP_001992109.1 192291504 6410799 3374371..3377298 1 NC_011004.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; monovalent cation/H+ antiporter subunit A 3377298 6410799 Rpal_3128 Rhodopseudomonas palustris TIE-1 monovalent cation/H+ antiporter subunit A YP_001992109.1 3374371 D 395960 CDS YP_001992110.1 192291505 6410800 3377289..3377630 1 NC_011004.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C 3377630 6410800 Rpal_3129 Rhodopseudomonas palustris TIE-1 monovalent cation/H+ antiporter subunit C YP_001992110.1 3377289 D 395960 CDS YP_001992111.1 192291506 6410801 3377627..3379261 1 NC_011004.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D 3379261 6410801 Rpal_3130 Rhodopseudomonas palustris TIE-1 monovalent cation/H+ antiporter subunit D YP_001992111.1 3377627 D 395960 CDS YP_001992112.1 192291507 6410802 3379258..3379746 1 NC_011004.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E 3379746 6410802 Rpal_3131 Rhodopseudomonas palustris TIE-1 monovalent cation/H+ antiporter subunit E YP_001992112.1 3379258 D 395960 CDS YP_001992113.1 192291508 6410803 3379743..3380024 1 NC_011004.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit F 3380024 6410803 Rpal_3132 Rhodopseudomonas palustris TIE-1 monovalent cation/H+ antiporter subunit F YP_001992113.1 3379743 D 395960 CDS YP_001992114.1 192291509 6410804 3380021..3380392 1 NC_011004.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: net:Neut_1702 monovalent cation/H+ antiporter subunit G; monovalent cation/proton antiporter subunit MnhG/PhaG 3380392 6410804 Rpal_3133 Rhodopseudomonas palustris TIE-1 monovalent cation/proton antiporter subunit MnhG/PhaG YP_001992114.1 3380021 D 395960 CDS YP_001992115.1 192291510 6410805 complement(3380410..3381198) 1 NC_011004.1 PFAM: alanine racemase domain protein; KEGG: rru:Rru_A1141 hypothetical protein; alanine racemase domain-containing protein 3381198 6410805 Rpal_3134 Rhodopseudomonas palustris TIE-1 alanine racemase domain-containing protein YP_001992115.1 3380410 R 395960 CDS YP_001992116.1 192291511 6410806 complement(3381219..3382523) 1 NC_011004.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3382523 6410806 Rpal_3135 Rhodopseudomonas palustris TIE-1 serine hydroxymethyltransferase YP_001992116.1 3381219 R 395960 CDS YP_001992117.1 192291512 6410807 complement(3382677..3384167) 1 NC_011004.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rru:Rru_A1143 regulatory protein GntR; GntR family transcriptional regulator 3384167 6410807 Rpal_3136 Rhodopseudomonas palustris TIE-1 GntR family transcriptional regulator YP_001992117.1 3382677 R 395960 CDS YP_001992118.1 192291513 6410808 3384275..3385507 1 NC_011004.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: rru:Rru_A1144 benzoate membrane transport protein; benzoate transporter 3385507 6410808 Rpal_3137 Rhodopseudomonas palustris TIE-1 benzoate transporter YP_001992118.1 3384275 D 395960 CDS YP_001992119.1 192291514 6410809 3385504..3386370 1 NC_011004.1 TIGRFAM: pyridoxal kinase; PFAM: phosphomethylpyrimidine kinase type-1; KEGG: rru:Rru_A1145 pyridoxal kinase; pyridoxal kinase 3386370 6410809 Rpal_3138 Rhodopseudomonas palustris TIE-1 pyridoxal kinase YP_001992119.1 3385504 D 395960 CDS YP_001992120.1 192291515 6410811 complement(3387475..3387972) 1 NC_011004.1 PFAM: Collagen triple helix repeat; KEGG: mex:Mext_0878 collagen triple helix repeat; Collagen triple helix repeat 3387972 6410811 Rpal_3141 Rhodopseudomonas palustris TIE-1 Collagen triple helix repeat YP_001992120.1 3387475 R 395960 CDS YP_001992121.1 192291516 6410812 3388219..3390282 1 NC_011004.1 PFAM: UvrD/REP helicase; KEGG: nha:Nham_3768 UvrD/REP helicase; UvrD/REP helicase 3390282 6410812 Rpal_3142 Rhodopseudomonas palustris TIE-1 UvrD/REP helicase YP_001992121.1 3388219 D 395960 CDS YP_001992122.1 192291517 6410813 complement(3390289..3390612) 1 NC_011004.1 KEGG: gvi:gll2745 hypothetical protein; hypothetical protein 3390612 6410813 Rpal_3143 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992122.1 3390289 R 395960 CDS YP_001992123.1 192291518 6410814 complement(3390685..3391422) 1 NC_011004.1 KEGG: bja:blr4499 hypothetical protein; hypothetical protein 3391422 6410814 Rpal_3144 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992123.1 3390685 R 395960 CDS YP_001992124.1 192291519 6410815 3391486..3392124 1 NC_011004.1 KEGG: bbt:BBta_4085 nitrile hydratase subunit alpha (nitrilase) (NHase); TIGRFAM: nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase alpha chain; nitrile hydratase subunit alpha 3392124 6410815 Rpal_3145 Rhodopseudomonas palustris TIE-1 nitrile hydratase subunit alpha YP_001992124.1 3391486 D 395960 CDS YP_001992125.1 192291520 6410816 3392121..3392777 1 NC_011004.1 PFAM: nitrile hydratase beta subunit; KEGG: bra:BRADO3846 nitrile hydratase subunit beta (nitrilase) (NHase); nitrile hydratase 3392777 6410816 Rpal_3146 Rhodopseudomonas palustris TIE-1 nitrile hydratase YP_001992125.1 3392121 D 395960 CDS YP_001992126.1 192291521 6410817 3392777..3393199 1 NC_011004.1 KEGG: bja:bll4496 hypothetical protein; hypothetical protein 3393199 6410817 Rpal_3147 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992126.1 3392777 D 395960 CDS YP_001992127.1 192291522 6410818 3393323..3394456 1 NC_011004.1 KEGG: mlo:mll2082 hypothetical protein; cellulose biosynthesis (CelD)-like protein 3394456 6410818 Rpal_3148 Rhodopseudomonas palustris TIE-1 cellulose biosynthesis (CelD)-like protein YP_001992127.1 3393323 D 395960 CDS YP_001992128.1 192291523 6410819 complement(3394429..3395721) 1 NC_011004.1 PFAM: beta-lactamase; KEGG: bja:blr5541 hypothetical protein; beta-lactamase 3395721 6410819 Rpal_3149 Rhodopseudomonas palustris TIE-1 beta-lactamase YP_001992128.1 3394429 R 395960 CDS YP_001992129.1 192291524 6410820 complement(3395803..3396516) 1 NC_011004.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: bja:blr4495 hypothetical protein; exsB protein 3396516 6410820 Rpal_3150 Rhodopseudomonas palustris TIE-1 exsB protein YP_001992129.1 3395803 R 395960 CDS YP_001992130.1 192291525 6410821 3396633..3397457 1 NC_011004.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 3397457 mazG 6410821 mazG Rhodopseudomonas palustris TIE-1 nucleoside triphosphate pyrophosphohydrolase YP_001992130.1 3396633 D 395960 CDS YP_001992131.1 192291526 6410822 3397536..3398831 1 NC_011004.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: bbt:BBta_7487 inner membrane protein (UPF0053 family) with 2 CBS domains; hypothetical protein 3398831 6410822 Rpal_3152 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992131.1 3397536 D 395960 CDS YP_001992132.1 192291527 6410823 3398828..3399190 1 NC_011004.1 KEGG: art:Arth_0893 hypothetical protein; hypothetical protein 3399190 6410823 Rpal_3153 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992132.1 3398828 D 395960 CDS YP_001992133.1 192291528 6410824 complement(3399306..3399809) 1 NC_011004.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 3399809 6410824 Rpal_3154 Rhodopseudomonas palustris TIE-1 single-stranded DNA-binding protein YP_001992133.1 3399306 R 395960 CDS YP_001992134.1 192291529 6410825 3400347..3401087 1 NC_011004.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: nwi:Nwi_1567 outer-membrane protein precursor; OmpA domain-containing protein transmembrane region-containing protein 3401087 6410825 Rpal_3155 Rhodopseudomonas palustris TIE-1 OmpA domain-containing protein transmembrane region-containing protein YP_001992134.1 3400347 D 395960 CDS YP_001992135.1 192291530 6410826 3401397..3404414 1 NC_011004.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 3404414 uvrA 6410826 uvrA Rhodopseudomonas palustris TIE-1 excinuclease ABC subunit A YP_001992135.1 3401397 D 395960 CDS YP_001992136.1 192291531 6410827 3404526..3405446 1 NC_011004.1 KEGG: stp:Strop_1997 hypothetical protein; hypothetical protein 3405446 6410827 Rpal_3157 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992136.1 3404526 D 395960 CDS YP_001992137.1 192291532 6410828 3405906..3406280 1 NC_011004.1 KEGG: nha:Nham_2096 hypothetical protein; hypothetical protein 3406280 6410828 Rpal_3158 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992137.1 3405906 D 395960 CDS YP_001992138.1 192291533 6410829 complement(3406325..3407245) 1 NC_011004.1 KEGG: swd:Swoo_4747 methionine sulfoxide reductase A; methionine sulfoxide reductase A 3407245 6410829 Rpal_3159 Rhodopseudomonas palustris TIE-1 methionine sulfoxide reductase A YP_001992138.1 3406325 R 395960 CDS YP_001992139.1 192291534 6410830 complement(3407255..3407503) 1 NC_011004.1 PFAM: protein of unknown function DUF433; KEGG: bja:bsl4703 hypothetical protein; hypothetical protein 3407503 6410830 Rpal_3160 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992139.1 3407255 R 395960 CDS YP_001992140.1 192291535 6410831 3407648..3408424 1 NC_011004.1 PFAM: ion transport protein; ion transport 2 domain protein; KEGG: mex:Mext_1106 ion transport 2 domain protein; ion transport 2 domain-containing protein 3408424 6410831 Rpal_3161 Rhodopseudomonas palustris TIE-1 ion transport 2 domain-containing protein YP_001992140.1 3407648 D 395960 CDS YP_001992141.1 192291536 6410832 3408462..3409016 1 NC_011004.1 KEGG: bja:blr4716 hypothetical protein; hypothetical protein 3409016 6410832 Rpal_3162 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992141.1 3408462 D 395960 CDS YP_001992142.1 192291537 6410833 3409293..3409583 1 NC_011004.1 KEGG: bja:bsr4721 hypothetical protein; hypothetical protein 3409583 6410833 Rpal_3163 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992142.1 3409293 D 395960 CDS YP_001992143.1 192291538 6410834 3409716..3410123 1 NC_011004.1 PFAM: thioesterase superfamily protein; KEGG: pla:Plav_2975 thioesterase superfamily protein; thioesterase superfamily protein 3410123 6410834 Rpal_3164 Rhodopseudomonas palustris TIE-1 thioesterase superfamily protein YP_001992143.1 3409716 D 395960 CDS YP_001992144.1 192291539 6410835 complement(3410426..3410818) 1 NC_011004.1 KEGG: bbt:BBta_4393 hypothetical protein; hypothetical protein 3410818 6410835 Rpal_3165 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992144.1 3410426 R 395960 CDS YP_001992145.1 192291540 6410836 3411200..3412096 1 NC_011004.1 KEGG: bja:blr4723 hypothetical protein; hypothetical protein 3412096 6410836 Rpal_3166 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992145.1 3411200 D 395960 CDS YP_001992146.1 192291541 6410837 3412596..3412748 1 NC_011004.1 PFAM: protein of unknown function DUF1127; KEGG: bja:bsr4726 hypothetical protein; hypothetical protein 3412748 6410837 Rpal_3167 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992146.1 3412596 D 395960 CDS YP_001992147.1 192291542 6410838 3412885..3414321 1 NC_011004.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 3414321 6410838 Rpal_3168 Rhodopseudomonas palustris TIE-1 tRNA (uracil-5-)-methyltransferase Gid YP_001992147.1 3412885 D 395960 CDS YP_001992148.1 192291543 6410839 complement(3414351..3415223) 1 NC_011004.1 KEGG: bja:bll4732 phytoene synthase; phytoene synthase 3415223 6410839 Rpal_3169 Rhodopseudomonas palustris TIE-1 phytoene synthase YP_001992148.1 3414351 R 395960 CDS YP_001992149.1 192291544 6410840 complement(3415220..3415603) 1 NC_011004.1 PFAM: protein of unknown function DUF498; KEGG: bbt:BBta_4404 hypothetical protein; hypothetical protein 3415603 6410840 Rpal_3170 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992149.1 3415220 R 395960 CDS YP_001992150.1 192291545 6410841 complement(3415764..3416882) 1 NC_011004.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 3416882 secF 6410841 secF Rhodopseudomonas palustris TIE-1 preprotein translocase subunit SecF YP_001992150.1 3415764 R 395960 CDS YP_001992151.1 192291546 6410842 complement(3416908..3418509) 1 NC_011004.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 3418509 secD 6410842 secD Rhodopseudomonas palustris TIE-1 preprotein translocase subunit SecD YP_001992151.1 3416908 R 395960 CDS YP_001992152.1 192291547 6410843 complement(3418554..3418994) 1 NC_011004.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: bra:BRADO4036 preprotein translocase (YajC); preprotein translocase subunit YajC 3418994 6410843 Rpal_3173 Rhodopseudomonas palustris TIE-1 preprotein translocase subunit YajC YP_001992152.1 3418554 R 395960 CDS YP_001992153.1 192291548 6410844 3419185..3420174 1 NC_011004.1 PFAM: protein of unknown function DUF815; KEGG: bbt:BBta_4408 ATPase family protein; hypothetical protein 3420174 6410844 Rpal_3174 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992153.1 3419185 D 395960 CDS YP_001992154.1 192291549 6410845 3420343..3422043 1 NC_011004.1 KEGG: bja:bll1872 hypothetical protein; hypothetical protein 3422043 6410845 Rpal_3175 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992154.1 3420343 D 395960 CDS YP_001992155.1 192291550 6410846 complement(3422090..3422890) 1 NC_011004.1 KEGG: bja:blr5741 hypothetical protein; hypothetical protein 3422890 6410846 Rpal_3176 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992155.1 3422090 R 395960 CDS YP_001992156.1 192291551 6410847 3423035..3424615 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; transcriptional activator domain; KEGG: bja:bll5740 hypothetical protein; SARP family transcriptional regulator 3424615 6410847 Rpal_3177 Rhodopseudomonas palustris TIE-1 SARP family transcriptional regulator YP_001992156.1 3423035 D 395960 CDS YP_001992157.1 192291552 6410848 complement(3424716..3426131) 1 NC_011004.1 PFAM: peptidoglycan-binding LysM; peptidase M23; KEGG: nha:Nham_1795 peptidase M23B; peptidase M23 3426131 6410848 Rpal_3178 Rhodopseudomonas palustris TIE-1 peptidase M23 YP_001992157.1 3424716 R 395960 CDS YP_001992158.1 192291553 6410849 complement(3426252..3426905) 1 NC_011004.1 KEGG: nha:Nham_1794 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase type 11; protein-L-isoaspartate O-methyltransferase 3426905 6410849 Rpal_3179 Rhodopseudomonas palustris TIE-1 protein-L-isoaspartate O-methyltransferase YP_001992158.1 3426252 R 395960 CDS YP_001992159.1 192291554 6410850 3427127..3427501 1 NC_011004.1 PFAM: response regulator receiver; KEGG: bbt:BBta_4411 response regulator receiver (CheY-like protein); response regulator receiver protein 3427501 6410850 Rpal_3180 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001992159.1 3427127 D 395960 CDS YP_001992160.1 192291555 6410851 complement(3427510..3428037) 1 NC_011004.1 PFAM: protein of unknown function UPF0157; KEGG: lsp:Bsph_3139 UPF0157 protein; hypothetical protein 3428037 6410851 Rpal_3181 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992160.1 3427510 R 395960 CDS YP_001992161.1 192291556 6410852 complement(3428249..3429016) 1 NC_011004.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 3429016 surE 6410852 surE Rhodopseudomonas palustris TIE-1 stationary phase survival protein SurE YP_001992161.1 3428249 R 395960 CDS YP_001992162.1 192291557 6410854 complement(3431648..3432304) 1 NC_011004.1 PFAM: SCP-like extracellular; KEGG: bbt:BBta_6058 hypothetical protein; hypothetical protein 3432304 6410854 Rpal_3184 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992162.1 3431648 R 395960 CDS YP_001992163.1 192291558 6410855 complement(3432310..3433614) 1 NC_011004.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 3433614 6410855 Rpal_3185 Rhodopseudomonas palustris TIE-1 seryl-tRNA synthetase YP_001992163.1 3432310 R 395960 CDS YP_001992164.1 192291559 6410856 complement(3433725..3434162) 1 NC_011004.1 KEGG: azc:AZC_2096 autotransporter; autotransporter 3434162 6410856 Rpal_3186 Rhodopseudomonas palustris TIE-1 autotransporter YP_001992164.1 3433725 R 395960 CDS YP_001992165.1 192291560 6410857 complement(3434186..3434995) 1 NC_011004.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: bja:bll4749 sec-independent protein translocase protein; Sec-independent protein translocase subunit TatC 3434995 6410857 Rpal_3187 Rhodopseudomonas palustris TIE-1 Sec-independent protein translocase subunit TatC YP_001992165.1 3434186 R 395960 CDS YP_001992166.1 192291561 6410858 complement(3434992..3435501) 1 NC_011004.1 KEGG: bja:bll4750 sec-independent protein translocase protein; sec-independent protein translocase protein 3435501 6410858 Rpal_3188 Rhodopseudomonas palustris TIE-1 sec-independent protein translocase protein YP_001992166.1 3434992 R 395960 CDS YP_001992167.1 192291562 6410859 complement(3435718..3435954) 1 NC_011004.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 3435954 tatA 6410859 tatA Rhodopseudomonas palustris TIE-1 twin arginine translocase protein A YP_001992167.1 3435718 R 395960 CDS YP_001992168.1 192291563 6410860 complement(3436101..3437399) 1 NC_011004.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: bra:BRADO4048 hypothetical protein; segregation and condensation protein B 3437399 6410860 Rpal_3190 Rhodopseudomonas palustris TIE-1 segregation and condensation protein B YP_001992168.1 3436101 R 395960 CDS YP_001992169.1 192291564 6410861 complement(3437420..3438253) 1 NC_011004.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: bja:bll4753 hypothetical protein; chromosome segregation and condensation protein ScpA 3438253 6410861 Rpal_3191 Rhodopseudomonas palustris TIE-1 chromosome segregation and condensation protein ScpA YP_001992169.1 3437420 R 395960 CDS YP_001992170.1 192291565 6410862 complement(3438250..3439275) 1 NC_011004.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: bja:bll4754 glycosyl hydrolase; beta-N-acetylhexosaminidase 3439275 6410862 Rpal_3192 Rhodopseudomonas palustris TIE-1 beta-N-acetylhexosaminidase YP_001992170.1 3438250 R 395960 CDS YP_001992171.1 192291566 6410863 complement(3439324..3440961) 1 NC_011004.1 PFAM: Sporulation domain protein; KEGG: nha:Nham_1759 sporulation related; sporulation domain-containing protein 3440961 6410863 Rpal_3193 Rhodopseudomonas palustris TIE-1 sporulation domain-containing protein YP_001992171.1 3439324 R 395960 CDS YP_001992172.1 192291567 6410864 complement(3441046..3442824) 1 NC_011004.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 3442824 argS 6410864 argS Rhodopseudomonas palustris TIE-1 arginyl-tRNA synthetase YP_001992172.1 3441046 R 395960 CDS YP_001992173.1 192291568 6410865 complement(3442891..3444093) 1 NC_011004.1 KEGG: bja:bll4758 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase 3444093 6410865 Rpal_3195 Rhodopseudomonas palustris TIE-1 deoxyguanosinetriphosphate triphosphohydrolase YP_001992173.1 3442891 R 395960 CDS YP_001992174.1 192291569 6410866 3444212..3444544 1 NC_011004.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bja:blr4759 hypothetical protein; iron-sulfur cluster assembly accessory protein 3444544 6410866 Rpal_3196 Rhodopseudomonas palustris TIE-1 iron-sulfur cluster assembly accessory protein YP_001992174.1 3444212 D 395960 CDS YP_001992175.1 192291570 6410867 3444775..3445788 1 NC_011004.1 KEGG: bja:blr7173 methyl accepting chemotaxis protein; methyl accepting chemotaxis protein 3445788 6410867 Rpal_3197 Rhodopseudomonas palustris TIE-1 methyl accepting chemotaxis protein YP_001992175.1 3444775 D 395960 CDS YP_001992176.1 192291571 6410868 3445785..3446849 1 NC_011004.1 KEGG: fph:Fphi_0374 hypothetical protein; hypothetical protein 3446849 6410868 Rpal_3198 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992176.1 3445785 D 395960 CDS YP_001992177.1 192291572 6410869 complement(3446876..3447613) 1 NC_011004.1 KEGG: pst:PSPTO_2262 hypothetical protein; hypothetical protein 3447613 6410869 Rpal_3199 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992177.1 3446876 R 395960 CDS YP_001992178.1 192291573 6410870 complement(3447735..3448694) 1 NC_011004.1 KEGG: pst:PSPTO_2262 hypothetical protein; hypothetical protein 3448694 6410870 Rpal_3200 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992178.1 3447735 R 395960 CDS YP_001992179.1 192291574 6410871 complement(3448857..3449195) 1 NC_011004.1 PFAM: helix-turn-helix domain protein; KEGG: ret:RHE_PF00441 hypothetical protein; helix-turn-helix domain-containing protein 3449195 6410871 Rpal_3201 Rhodopseudomonas palustris TIE-1 helix-turn-helix domain-containing protein YP_001992179.1 3448857 R 395960 CDS YP_001992180.1 192291575 6410872 3449378..3450169 1 NC_011004.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bbt:BBta_4438 exodeoxyribonuclease III; exodeoxyribonuclease III Xth 3450169 6410872 Rpal_3202 Rhodopseudomonas palustris TIE-1 exodeoxyribonuclease III Xth YP_001992180.1 3449378 D 395960 CDS YP_001992181.1 192291576 6410873 complement(3450336..3451157) 1 NC_011004.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nha:Nham_1754 Sel1-like; Sel1 domain-containing protein repeat-containing protein 3451157 6410873 Rpal_3203 Rhodopseudomonas palustris TIE-1 Sel1 domain-containing protein repeat-containing protein YP_001992181.1 3450336 R 395960 CDS YP_001992182.1 192291577 6410874 complement(3451144..3451587) 1 NC_011004.1 hypothetical protein 3451587 6410874 Rpal_3204 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992182.1 3451144 R 395960 CDS YP_001992183.1 192291578 6410875 complement(3451820..3453241) 1 NC_011004.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 3453241 6410875 Rpal_3205 Rhodopseudomonas palustris TIE-1 dihydrolipoamide dehydrogenase YP_001992183.1 3451820 R 395960 CDS YP_001992184.1 192291579 6410876 complement(3453317..3454723) 1 NC_011004.1 KEGG: nha:Nham_1751 branched-chain alpha-keto acid dehydrogenase subunit E2; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; branched-chain alpha-keto acid dehydrogenase subunit E2 3454723 6410876 Rpal_3206 Rhodopseudomonas palustris TIE-1 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001992184.1 3453317 R 395960 CDS YP_001992185.1 192291580 6410877 complement(3454736..3455032) 1 NC_011004.1 KEGG: bbt:BBta_4461 hypothetical protein; hypothetical protein 3455032 6410877 Rpal_3207 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992185.1 3454736 R 395960 CDS YP_001992186.1 192291581 6410878 complement(3455458..3456867) 1 NC_011004.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 3456867 6410878 Rpal_3208 Rhodopseudomonas palustris TIE-1 pyruvate dehydrogenase subunit beta YP_001992186.1 3455458 R 395960 CDS YP_001992187.1 192291582 6410879 complement(3456926..3457960) 1 NC_011004.1 KEGG: bra:BRADO4087 pyruvate dehydrogenase E1 component, alpha subunit; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 3457960 6410879 Rpal_3209 Rhodopseudomonas palustris TIE-1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha YP_001992187.1 3456926 R 395960 CDS YP_001992188.1 192291583 6410880 complement(3458113..3458430) 1 NC_011004.1 PFAM: Septum formation initiator; KEGG: bja:bll4786 hypothetical protein; septum formation initiator 3458430 6410880 Rpal_3210 Rhodopseudomonas palustris TIE-1 septum formation initiator YP_001992188.1 3458113 R 395960 CDS YP_001992189.1 192291584 6410881 complement(3458519..3459079) 1 NC_011004.1 PFAM: NADPH-dependent FMN reductase; KEGG: nha:Nham_1747 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 3459079 6410881 Rpal_3211 Rhodopseudomonas palustris TIE-1 NADPH-dependent FMN reductase YP_001992189.1 3458519 R 395960 CDS YP_001992190.1 192291585 6410882 complement(3459218..3460360) 1 NC_011004.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_3236 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 3460360 6410882 Rpal_3212 Rhodopseudomonas palustris TIE-1 L-carnitine dehydratase/bile acid-inducible protein F YP_001992190.1 3459218 R 395960 CDS YP_001992191.1 192291586 6410883 3460453..3461067 1 NC_011004.1 PFAM: lysine exporter; KEGG: mlo:mlr8191 hypothetical protein; lysine exporter 3461067 6410883 Rpal_3213 Rhodopseudomonas palustris TIE-1 lysine exporter YP_001992191.1 3460453 D 395960 CDS YP_001992192.1 192291587 6410884 complement(3461221..3462024) 1 NC_011004.1 hypothetical protein 3462024 6410884 Rpal_3214 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992192.1 3461221 R 395960 CDS YP_001992193.1 192291588 6410885 complement(3462109..3463242) 1 NC_011004.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_4470 alcohol dehydrogenase-like protein GroES-like domain/NAD(P)-binding Rossmann-fold domain; alcohol dehydrogenase GroES domain-containing protein 3463242 6410885 Rpal_3215 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase GroES domain-containing protein YP_001992193.1 3462109 R 395960 CDS YP_001992194.1 192291589 6410886 complement(3463353..3464636) 1 NC_011004.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3464636 eno 6410886 eno Rhodopseudomonas palustris TIE-1 phosphopyruvate hydratase YP_001992194.1 3463353 R 395960 CDS YP_001992195.1 192291590 6410887 3464823..3465299 1 NC_011004.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3465299 6410887 Rpal_3217 Rhodopseudomonas palustris TIE-1 7-cyano-7-deazaguanine reductase YP_001992195.1 3464823 D 395960 CDS YP_001992196.1 192291591 6410888 3465422..3465766 1 NC_011004.1 KEGG: bja:bll1339 hypothetical protein; hypothetical protein 3465766 6410888 Rpal_3218 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992196.1 3465422 D 395960 CDS YP_001992197.1 192291592 6410890 3466007..3467518 1 NC_011004.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 3467518 mdoD 6410890 mdoD Rhodopseudomonas palustris TIE-1 glucan biosynthesis protein D YP_001992197.1 3466007 D 395960 CDS YP_001992198.1 192291593 6410891 3467506..3469671 1 NC_011004.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 3469671 6410891 Rpal_3221 Rhodopseudomonas palustris TIE-1 glucosyltransferase MdoH YP_001992198.1 3467506 D 395960 CDS YP_001992199.1 192291594 6410892 complement(3469668..3470894) 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_4473 permease of the major facilitator superfamily; major facilitator superfamily protein 3470894 6410892 Rpal_3222 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001992199.1 3469668 R 395960 CDS YP_001992200.1 192291595 6410893 complement(3470894..3471757) 1 NC_011004.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 3471757 6410893 Rpal_3223 Rhodopseudomonas palustris TIE-1 2-dehydro-3-deoxyphosphooctonate aldolase YP_001992200.1 3470894 R 395960 CDS YP_001992201.1 192291596 6410894 complement(3471754..3472647) 1 NC_011004.1 KEGG: azc:AZC_3066 hypothetical protein; hypothetical protein 3472647 6410894 Rpal_3224 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992201.1 3471754 R 395960 CDS YP_001992202.1 192291597 6410895 complement(3472770..3473096) 1 NC_011004.1 PFAM: NIPSNAP family containing protein; KEGG: bbt:BBta_4475 hypothetical protein; NIPSNAP family containing protein 3473096 6410895 Rpal_3225 Rhodopseudomonas palustris TIE-1 NIPSNAP family containing protein YP_001992202.1 3472770 R 395960 CDS YP_001992203.1 192291598 6410896 3473173..3473460 1 NC_011004.1 KEGG: swi:Swit_1213 protein of unknown function DUF497; hypothetical protein 3473460 6410896 Rpal_3226 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992203.1 3473173 D 395960 CDS YP_001992204.1 192291599 6410897 3473450..3473725 1 NC_011004.1 KEGG: mex:Mext_0337 hypothetical protein; hypothetical protein 3473725 6410897 Rpal_3227 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992204.1 3473450 D 395960 CDS YP_001992205.1 192291600 6410898 complement(3473763..3474620) 1 NC_011004.1 hypothetical protein 3474620 6410898 Rpal_3228 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992205.1 3473763 R 395960 CDS YP_001992206.1 192291601 6410899 3474751..3475128 1 NC_011004.1 PFAM: hypothetical protein; KEGG: nwi:Nwi_1832 hypothetical protein; hypothetical protein 3475128 6410899 Rpal_3229 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992206.1 3474751 D 395960 CDS YP_001992207.1 192291602 6410900 3475240..3475386 1 NC_011004.1 hypothetical protein 3475386 6410900 Rpal_3230 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992207.1 3475240 D 395960 CDS YP_001992208.1 192291603 6410901 complement(3475400..3477031) 1 NC_011004.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 3477031 pyrG 6410901 pyrG Rhodopseudomonas palustris TIE-1 CTP synthetase YP_001992208.1 3475400 R 395960 CDS YP_001992209.1 192291604 6410902 complement(3477198..3477602) 1 NC_011004.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: bra:BRADO4104 preprotein translocase subunit SecG; preprotein translocase subunit SecG 3477602 secG 6410902 secG Rhodopseudomonas palustris TIE-1 preprotein translocase subunit SecG YP_001992209.1 3477198 R 395960 CDS YP_001992210.1 192291605 6410903 complement(3477778..3478554) 1 NC_011004.1 PFAM: triosephosphate isomerase; KEGG: bja:bll4807 triosephosphate isomerase; Triose-phosphate isomerase 3478554 6410903 Rpal_3233 Rhodopseudomonas palustris TIE-1 Triose-phosphate isomerase YP_001992210.1 3477778 R 395960 CDS YP_001992211.1 192291606 6410904 3478824..3480713 1 NC_011004.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bja:blr4808 probable peptidyl-prolyl cis-trans isomerse; PpiC-type peptidyl-prolyl cis-trans isomerase 3480713 6410904 Rpal_3234 Rhodopseudomonas palustris TIE-1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001992211.1 3478824 D 395960 CDS YP_001992212.1 192291607 6410905 3480750..3481766 1 NC_011004.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 3481766 trpD 6410905 trpD Rhodopseudomonas palustris TIE-1 anthranilate phosphoribosyltransferase YP_001992212.1 3480750 D 395960 CDS YP_001992213.1 192291608 6410906 3481897..3482694 1 NC_011004.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 3482694 trpC 6410906 trpC Rhodopseudomonas palustris TIE-1 indole-3-glycerol-phosphate synthase YP_001992213.1 3481897 D 395960 CDS YP_001992214.1 192291609 6410907 3482705..3483235 1 NC_011004.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 3483235 moaC 6410907 moaC Rhodopseudomonas palustris TIE-1 molybdenum cofactor biosynthesis protein MoaC YP_001992214.1 3482705 D 395960 CDS YP_001992215.1 192291610 6410908 3483273..3485831 1 NC_011004.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bja:blr3815 cation-transporting ATPase; ATPase P 3485831 6410908 Rpal_3238 Rhodopseudomonas palustris TIE-1 ATPase P YP_001992215.1 3483273 D 395960 CDS YP_001992216.1 192291611 6410909 complement(3485868..3486005) 1 NC_011004.1 hypothetical protein 3486005 6410909 Rpal_3239 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992216.1 3485868 R 395960 CDS YP_001992217.1 192291612 6410910 complement(3485959..3486435) 1 NC_011004.1 KEGG: nwi:Nwi_1114 hypothetical protein; hypothetical protein 3486435 6410910 Rpal_3240 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992217.1 3485959 R 395960 CDS YP_001992218.1 192291613 6410911 3486674..3487174 1 NC_011004.1 PFAM: heat shock protein Hsp20; KEGG: pde:Pden_3146 heat shock protein HSP20; heat shock protein Hsp20 3487174 6410911 Rpal_3241 Rhodopseudomonas palustris TIE-1 heat shock protein Hsp20 YP_001992218.1 3486674 D 395960 CDS YP_001992219.1 192291614 6410912 3487343..3487591 1 NC_011004.1 PFAM: type IV pilus assembly PilZ; KEGG: bja:bsr0173 hypothetical protein; type IV pilus assembly PilZ 3487591 6410912 Rpal_3242 Rhodopseudomonas palustris TIE-1 type IV pilus assembly PilZ YP_001992219.1 3487343 D 395960 CDS YP_001992220.1 192291615 6410913 complement(3487631..3488488) 1 NC_011004.1 PFAM: OmpA/MotB domain protein; KEGG: bbt:BBta_3511 chemotaxis protein MotB; OmpA/MotB domain-containing protein 3488488 6410913 Rpal_3243 Rhodopseudomonas palustris TIE-1 OmpA/MotB domain-containing protein YP_001992220.1 3487631 R 395960 CDS YP_001992221.1 192291616 6410914 3488748..3489374 1 NC_011004.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bra:BRADO4115 haloacid dehalogenase-like hydrolase; HAD family hydrolase 3489374 6410914 Rpal_3244 Rhodopseudomonas palustris TIE-1 HAD family hydrolase YP_001992221.1 3488748 D 395960 CDS YP_001992222.1 192291617 6410915 3489405..3489893 1 NC_011004.1 KEGG: thioesterase superfamily; K07107; thioesterase superfamily protein 3489893 6410915 Rpal_3245 Rhodopseudomonas palustris TIE-1 thioesterase superfamily protein YP_001992222.1 3489405 D 395960 CDS YP_001992223.1 192291618 6410916 3490041..3490454 1 NC_011004.1 KEGG: chu:CHU_2313 rifampin ADP-ribosylating transferase; rifampin ADP-ribosylating transferase 3490454 6410916 Rpal_3246 Rhodopseudomonas palustris TIE-1 rifampin ADP-ribosylating transferase YP_001992223.1 3490041 D 395960 CDS YP_001992224.1 192291619 6410917 complement(3490499..3490840) 1 NC_011004.1 KEGG: scl:sce2975 hypothetical protein; hypothetical protein 3490840 6410917 Rpal_3247 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992224.1 3490499 R 395960 CDS YP_001992225.1 192291620 6410918 3491040..3492251 1 NC_011004.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: bja:blr4825 molybdopterin biosynthesis protein; molybdenum cofactor synthesis domain-containing protein 3492251 6410918 Rpal_3248 Rhodopseudomonas palustris TIE-1 molybdenum cofactor synthesis domain-containing protein YP_001992225.1 3491040 D 395960 CDS YP_001992226.1 192291621 6410919 3492428..3493138 1 NC_011004.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 3493138 6410919 Rpal_3249 Rhodopseudomonas palustris TIE-1 LexA repressor YP_001992226.1 3492428 D 395960 CDS YP_001992227.1 192291622 6410920 complement(3493210..3495477) 1 NC_011004.1 PFAM: ComEC/Rec2-related protein; KEGG: bja:bll4830 hypothetical protein; ComEC/Rec2-like protein 3495477 6410920 Rpal_3250 Rhodopseudomonas palustris TIE-1 ComEC/Rec2-like protein YP_001992227.1 3493210 R 395960 CDS YP_001992228.1 192291623 6410921 complement(3495569..3497251) 1 NC_011004.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 3497251 6410921 Rpal_3251 Rhodopseudomonas palustris TIE-1 glutaminyl-tRNA synthetase YP_001992228.1 3495569 R 395960 CDS YP_001992229.1 192291624 6410922 3497413..3498834 1 NC_011004.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 3498834 gltX 6410922 gltX Rhodopseudomonas palustris TIE-1 glutamyl-tRNA synthetase YP_001992229.1 3497413 D 395960 CDS YP_001992230.1 192291625 6410923 3498985..3500289 1 NC_011004.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 3500289 gltA 6410923 gltA Rhodopseudomonas palustris TIE-1 type II citrate synthase YP_001992230.1 3498985 D 395960 CDS YP_001992231.1 192291626 6410924 complement(3500384..3501028) 1 NC_011004.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: nha:Nham_3264 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 3501028 6410924 Rpal_3254 Rhodopseudomonas palustris TIE-1 zinc-binding CMP/dCMP deaminase YP_001992231.1 3500384 R 395960 CDS YP_001992232.1 192291627 6410925 complement(3501168..3502349) 1 NC_011004.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 3502349 lpxB 6410925 lpxB Rhodopseudomonas palustris TIE-1 lipid-A-disaccharide synthase YP_001992232.1 3501168 R 395960 CDS YP_001992233.1 192291628 6410926 complement(3502346..3503203) 1 NC_011004.1 PFAM: protein of unknown function DUF1009; KEGG: nha:Nham_1706 protein of unknown function DUF1009; hypothetical protein 3503203 6410926 Rpal_3256 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992233.1 3502346 R 395960 CDS YP_001992234.1 192291629 6410927 complement(3503219..3504061) 1 NC_011004.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 3504061 6410927 Rpal_3257 Rhodopseudomonas palustris TIE-1 UDP-N-acetylglucosamine acyltransferase YP_001992234.1 3503219 R 395960 CDS YP_001992235.1 192291630 6410928 complement(3504070..3504525) 1 NC_011004.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 3504525 fabZ 6410928 fabZ Rhodopseudomonas palustris TIE-1 (3R)-hydroxymyristoyl-ACP dehydratase YP_001992235.1 3504070 R 395960 CDS YP_001992236.1 192291631 6410929 complement(3504525..3505607) 1 NC_011004.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 3505607 lpxD 6410929 lpxD Rhodopseudomonas palustris TIE-1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_001992236.1 3504525 R 395960 CDS YP_001992237.1 192291632 6410930 complement(3505637..3508162) 1 NC_011004.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: bbt:BBta_4509 exported protein of unknown function with surface antigen domain; outer membrane protein assembly complex, YaeT protein 3508162 6410930 Rpal_3260 Rhodopseudomonas palustris TIE-1 outer membrane protein assembly complex, YaeT protein YP_001992237.1 3505637 R 395960 CDS YP_001992238.1 192291633 6410931 complement(3508335..3509486) 1 NC_011004.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: nwi:Nwi_1852 peptidase M50, membrane-associated zinc metallopeptidase; membrane-associated zinc metalloprotease 3509486 6410931 Rpal_3261 Rhodopseudomonas palustris TIE-1 membrane-associated zinc metalloprotease YP_001992238.1 3508335 R 395960 CDS YP_001992239.1 192291634 6410932 complement(3509532..3510755) 1 NC_011004.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3510755 6410932 Rpal_3262 Rhodopseudomonas palustris TIE-1 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_001992239.1 3509532 R 395960 CDS YP_001992240.1 192291635 6410933 complement(3510760..3511608) 1 NC_011004.1 PFAM: phosphatidate cytidylyltransferase; KEGG: nha:Nham_1699 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 3511608 6410933 Rpal_3263 Rhodopseudomonas palustris TIE-1 phosphatidate cytidylyltransferase YP_001992240.1 3510760 R 395960 CDS YP_001992241.1 192291636 6410934 complement(3511614..3512372) 1 NC_011004.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 3512372 6410934 Rpal_3264 Rhodopseudomonas palustris TIE-1 undecaprenyl pyrophosphate synthase YP_001992241.1 3511614 R 395960 CDS YP_001992242.1 192291637 6410935 complement(3512584..3513144) 1 NC_011004.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 3513144 frr 6410935 frr Rhodopseudomonas palustris TIE-1 ribosome recycling factor YP_001992242.1 3512584 R 395960 CDS YP_001992243.1 192291638 6410936 complement(3513210..3513926) 1 NC_011004.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 3513926 pyrH 6410936 pyrH Rhodopseudomonas palustris TIE-1 uridylate kinase YP_001992243.1 3513210 R 395960 CDS YP_001992244.1 192291639 6410937 complement(3513994..3514920) 1 NC_011004.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 3514920 tsf 6410937 tsf Rhodopseudomonas palustris TIE-1 elongation factor Ts YP_001992244.1 3513994 R 395960 CDS YP_001992245.1 192291640 6410938 complement(3515045..3516040) 1 NC_011004.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 3516040 rpsB 6410938 rpsB Rhodopseudomonas palustris TIE-1 30S ribosomal protein S2 YP_001992245.1 3515045 R 395960 CDS YP_001992246.1 192291641 6410939 complement(3516275..3518761) 1 NC_011004.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: bja:bll4862 hypothetical protein; peptidase C14 caspase catalytic subunit p20 3518761 6410939 Rpal_3269 Rhodopseudomonas palustris TIE-1 peptidase C14 caspase catalytic subunit p20 YP_001992246.1 3516275 R 395960 CDS YP_001992247.1 192291642 6410940 complement(3518923..3522378) 1 NC_011004.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 3522378 dnaE 6410940 dnaE Rhodopseudomonas palustris TIE-1 DNA polymerase III subunit alpha YP_001992247.1 3518923 R 395960 CDS YP_001992248.1 192291643 6410941 complement(3522551..3522649) 1 NC_011004.1 KEGG: bra:BRADO4146 hypothetical protein; hypothetical protein 3522649 6410941 Rpal_3271 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992248.1 3522551 R 395960 CDS YP_001992249.1 192291644 6410942 3522867..3523109 1 NC_011004.1 KEGG: nha:Nham_2194 hypothetical protein; hypothetical protein 3523109 6410942 Rpal_3272 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992249.1 3522867 D 395960 CDS YP_001992250.1 192291645 6410943 3523215..3523469 1 NC_011004.1 KEGG: nha:Nham_2194 hypothetical protein; hypothetical protein 3523469 6410943 Rpal_3273 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992250.1 3523215 D 395960 CDS YP_001992251.1 192291646 6410944 complement(3523666..3524364) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2195 ABC transporter; ABC transporter 3524364 6410944 Rpal_3274 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001992251.1 3523666 R 395960 CDS YP_001992252.1 192291647 6410945 complement(3524376..3525644) 1 NC_011004.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: nha:Nham_2196 lipoprotein releasing system, transmembrane protein, LolC/E family; lipoprotein releasing system transmembrane protein LolC/E family 3525644 6410945 Rpal_3275 Rhodopseudomonas palustris TIE-1 lipoprotein releasing system transmembrane protein LolC/E family YP_001992252.1 3524376 R 395960 CDS YP_001992253.1 192291648 6410946 complement(3525736..3527052) 1 NC_011004.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3527052 6410946 Rpal_3276 Rhodopseudomonas palustris TIE-1 prolyl-tRNA synthetase YP_001992253.1 3525736 R 395960 CDS YP_001992254.1 192291649 6410947 complement(3527228..3528814) 1 NC_011004.1 PFAM: copper resistance protein CopC; copper resistance D domain protein; KEGG: nha:Nham_2198 copper resistance D; copper resistance protein CopC 3528814 6410947 Rpal_3277 Rhodopseudomonas palustris TIE-1 copper resistance protein CopC YP_001992254.1 3527228 R 395960 CDS YP_001992255.1 192291650 6410948 complement(3528832..3529362) 1 NC_011004.1 PFAM: nuclear export factor GLE1; KEGG: nha:Nham_2199 nuclear export factor GLE1; nuclear export factor GLE1 3529362 6410948 Rpal_3278 Rhodopseudomonas palustris TIE-1 nuclear export factor GLE1 YP_001992255.1 3528832 R 395960 CDS YP_001992256.1 192291651 6410949 complement(3529359..3529898) 1 NC_011004.1 PFAM: protein of unknown function DUF461; KEGG: bja:bll4880 hypothetical protein; hypothetical protein 3529898 6410949 Rpal_3279 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992256.1 3529359 R 395960 CDS YP_001992257.1 192291652 6410950 complement(3530027..3530440) 1 NC_011004.1 KEGG: nha:Nham_2202 hypothetical protein; hypothetical protein 3530440 6410950 Rpal_3280 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992257.1 3530027 R 395960 CDS YP_001992258.1 192291653 6410951 complement(3531053..3531334) 1 NC_011004.1 PFAM: protein of unknown function DUF1467; KEGG: bra:BRADO4167 hypothetical protein; hypothetical protein 3531334 6410951 Rpal_3281 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992258.1 3531053 R 395960 CDS YP_001992259.1 192291654 6410952 complement(3531338..3531742) 1 NC_011004.1 KEGG: bbt:BBta_4545 glyoxalase I family protein; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; methylmalonyl-CoA epimerase 3531742 6410952 Rpal_3282 Rhodopseudomonas palustris TIE-1 methylmalonyl-CoA epimerase YP_001992259.1 3531338 R 395960 CDS YP_001992260.1 192291655 6410953 complement(3531784..3533454) 1 NC_011004.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bra:BRADO4169 hydrolase of the metallo-beta-lactamase superfamily; beta-lactamase domain-containing protein 3533454 6410953 Rpal_3283 Rhodopseudomonas palustris TIE-1 beta-lactamase domain-containing protein YP_001992260.1 3531784 R 395960 CDS YP_001992261.1 192291656 6410954 complement(3533454..3534260) 1 NC_011004.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: bja:bll4903 biotin--protein ligase; biotin--acetyl-CoA-carboxylase ligase 3534260 6410954 Rpal_3284 Rhodopseudomonas palustris TIE-1 biotin--acetyl-CoA-carboxylase ligase YP_001992261.1 3533454 R 395960 CDS YP_001992262.1 192291657 6410955 complement(3534261..3535700) 1 NC_011004.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 3535700 6410955 Rpal_3285 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit N YP_001992262.1 3534261 R 395960 CDS YP_001992263.1 192291658 6410956 complement(3535720..3537237) 1 NC_011004.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 3537237 6410956 Rpal_3286 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit M YP_001992263.1 3535720 R 395960 CDS YP_001992264.1 192291659 6410957 complement(3537238..3539331) 1 NC_011004.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 3539331 6410957 Rpal_3287 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit L YP_001992264.1 3537238 R 395960 CDS YP_001992265.1 192291660 6410958 complement(3539391..3539702) 1 NC_011004.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 3539702 6410958 Rpal_3288 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit K YP_001992265.1 3539391 R 395960 CDS YP_001992266.1 192291661 6410959 complement(3539699..3540337) 1 NC_011004.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 3540337 6410959 Rpal_3289 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit J YP_001992266.1 3539699 R 395960 CDS YP_001992267.1 192291662 6410960 complement(3540347..3540835) 1 NC_011004.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 3540835 6410960 Rpal_3290 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit I YP_001992267.1 3540347 R 395960 CDS YP_001992268.1 192291663 6410961 complement(3540843..3541868) 1 NC_011004.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 3541868 6410961 Rpal_3291 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit H YP_001992268.1 3540843 R 395960 CDS YP_001992269.1 192291664 6410962 complement(3541878..3543953) 1 NC_011004.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 3543953 6410962 Rpal_3292 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit G YP_001992269.1 3541878 R 395960 CDS YP_001992270.1 192291665 6410963 complement(3543959..3545284) 1 NC_011004.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 3545284 6410963 Rpal_3293 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase I subunit F YP_001992270.1 3543959 R 395960 CDS YP_001992271.1 192291666 6410964 complement(3545303..3545518) 1 NC_011004.1 KEGG: bra:BRADO4180 hypothetical protein; hypothetical protein 3545518 6410964 Rpal_3294 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992271.1 3545303 R 395960 CDS YP_001992272.1 192291667 6410965 complement(3545515..3546264) 1 NC_011004.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 3546264 6410965 Rpal_3295 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit E YP_001992272.1 3545515 R 395960 CDS YP_001992273.1 192291668 6410966 complement(3546267..3547238) 1 NC_011004.1 TIGRFAM: methyltransferase FkbM family; KEGG: bja:bll4915 hypothetical protein; methyltransferase FkbM family protein 3547238 6410966 Rpal_3296 Rhodopseudomonas palustris TIE-1 methyltransferase FkbM family protein YP_001992273.1 3546267 R 395960 CDS YP_001992274.1 192291669 6410967 complement(3547235..3548443) 1 NC_011004.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 3548443 6410967 Rpal_3297 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit D YP_001992274.1 3547235 R 395960 CDS YP_001992275.1 192291670 6410968 complement(3548495..3549109) 1 NC_011004.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 3549109 6410968 Rpal_3298 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit C YP_001992275.1 3548495 R 395960 CDS YP_001992276.1 192291671 6410969 complement(3549123..3549719) 1 NC_011004.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 3549719 6410969 Rpal_3299 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit B YP_001992276.1 3549123 R 395960 CDS YP_001992277.1 192291672 6410970 complement(3549731..3550096) 1 NC_011004.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 3550096 6410970 Rpal_3300 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit A YP_001992277.1 3549731 R 395960 CDS YP_001992278.1 192291673 6410971 3550409..3550603 1 NC_011004.1 KEGG: bja:bsl2206 hypothetical protein; hypothetical protein 3550603 6410971 Rpal_3301 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992278.1 3550409 D 395960 CDS YP_001992279.1 192291674 6410973 3551412..3551723 1 NC_011004.1 PFAM: histone family protein DNA-binding protein; KEGG: nha:Nham_2223 histone-like DNA-binding protein; histone family protein DNA-binding protein 3551723 6410973 Rpal_3302 Rhodopseudomonas palustris TIE-1 histone family protein DNA-binding protein YP_001992279.1 3551412 D 395960 CDS YP_001992280.1 192291675 6410974 3552021..3553274 1 NC_011004.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 3553274 6410974 Rpal_3303 Rhodopseudomonas palustris TIE-1 peptidase T YP_001992280.1 3552021 D 395960 CDS YP_001992281.1 192291676 6410975 3553423..3554667 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mrd:Mrad2831_4789 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit 3554667 6410975 Rpal_3304 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001992281.1 3553423 D 395960 CDS YP_001992282.1 192291677 6410976 3554696..3557836 1 NC_011004.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: azc:AZC_3305 hydrophobe/amphiphile efflux-1; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3557836 6410976 Rpal_3305 Rhodopseudomonas palustris TIE-1 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_001992282.1 3554696 D 395960 CDS YP_001992283.1 192291678 6410978 3558335..3560986 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bja:blr0364 hypothetical protein; diguanylate cyclase/phosphodiesterase 3560986 6410978 Rpal_3306 Rhodopseudomonas palustris TIE-1 diguanylate cyclase/phosphodiesterase YP_001992283.1 3558335 D 395960 CDS YP_001992284.1 192291679 6410979 complement(3560999..3563431) 1 NC_011004.1 KEGG: bra:BRADO4196 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA; ATPase AAA; SMART: ATPase AAA; ATP-dependent protease La 3563431 6410979 Rpal_3307 Rhodopseudomonas palustris TIE-1 ATP-dependent protease La YP_001992284.1 3560999 R 395960 CDS YP_001992285.1 192291680 6410980 complement(3563752..3565026) 1 NC_011004.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 3565026 clpX 6410980 clpX Rhodopseudomonas palustris TIE-1 ATP-dependent protease ATP-binding subunit ClpX YP_001992285.1 3563752 R 395960 CDS YP_001992286.1 192291681 6410981 complement(3565419..3566057) 1 NC_011004.1 PFAM: peptidase S14 ClpP; KEGG: bbt:BBta_4573 ATP-dependent Clp protease proteolytic subunit (endopeptidase Clp); endopeptidase Clp 3566057 6410981 Rpal_3309 Rhodopseudomonas palustris TIE-1 endopeptidase Clp YP_001992286.1 3565419 R 395960 CDS YP_001992287.1 192291682 6410982 complement(3566370..3567728) 1 NC_011004.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 3567728 tig 6410982 tig Rhodopseudomonas palustris TIE-1 trigger factor YP_001992287.1 3566370 R 395960 CDS YP_001992288.1 192291683 6410984 complement(3568119..3568592) 1 NC_011004.1 KEGG: atu:Atu1192 transcriptional regulator, MarR family; hypothetical protein 3568592 6410984 Rpal_3311 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992288.1 3568119 R 395960 CDS YP_001992289.1 192291684 6410985 3568598..3569920 1 NC_011004.1 PFAM: multicopper oxidase type 1; multicopper oxidase type 2; KEGG: nha:Nham_2231 twin-arginine translocation pathway signal; multicopper oxidase type 2 3569920 6410985 Rpal_3312 Rhodopseudomonas palustris TIE-1 multicopper oxidase type 2 YP_001992289.1 3568598 D 395960 CDS YP_001992290.1 192291685 6410986 complement(3569969..3571468) 1 NC_011004.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: bra:BRADO4203 conserved hypothetical protein; YjeF-related protein; kinase, ribokinase-like superfamily; carbohydrate kinase 3571468 6410986 Rpal_3313 Rhodopseudomonas palustris TIE-1 carbohydrate kinase YP_001992290.1 3569969 R 395960 CDS YP_001992291.1 192291686 6410987 3571880..3572218 1 NC_011004.1 PFAM: nitrogen regulatory protein P-II; KEGG: bja:blr4948 nitrogen regulatory protein PII; nitrogen regulatory protein P-II 3572218 6410987 Rpal_3314 Rhodopseudomonas palustris TIE-1 nitrogen regulatory protein P-II YP_001992291.1 3571880 D 395960 CDS YP_001992292.1 192291687 6410988 3572308..3573717 1 NC_011004.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: nha:Nham_2234 glutamine synthetase, type I; glutamine synthetase, type I 3573717 6410988 Rpal_3315 Rhodopseudomonas palustris TIE-1 glutamine synthetase, type I YP_001992292.1 3572308 D 395960 CDS YP_001992293.1 192291688 6410989 3574002..3574751 1 NC_011004.1 PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: hne:HNE_1537 transcriptional regulator, TetR family; TetR family transcriptional regulator 3574751 6410989 Rpal_3316 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001992293.1 3574002 D 395960 CDS YP_001992294.1 192291689 6410990 3574764..3575375 1 NC_011004.1 KEGG: xau:Xaut_4923 hypothetical protein; hypothetical protein 3575375 6410990 Rpal_3317 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992294.1 3574764 D 395960 CDS YP_001992295.1 192291690 6410991 complement(3575518..3576795) 1 NC_011004.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3576795 6410991 Rpal_3318 Rhodopseudomonas palustris TIE-1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_001992295.1 3575518 R 395960 CDS YP_001992296.1 192291691 6410992 complement(3576792..3577430) 1 NC_011004.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 3577430 bioD 6410992 bioD Rhodopseudomonas palustris TIE-1 dithiobiotin synthetase YP_001992296.1 3576792 R 395960 CDS YP_001992297.1 192291692 6410993 complement(3577427..3578557) 1 NC_011004.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 3578557 6410993 Rpal_3320 Rhodopseudomonas palustris TIE-1 8-amino-7-oxononanoate synthase YP_001992297.1 3577427 R 395960 CDS YP_001992298.1 192291693 6410994 complement(3578698..3579261) 1 NC_011004.1 KEGG: nwi:Nwi_1498 hypothetical protein; hypothetical protein 3579261 6410994 Rpal_3321 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992298.1 3578698 R 395960 CDS YP_001992299.1 192291694 6410995 complement(3579350..3580780) 1 NC_011004.1 PFAM: Amidase; KEGG: nar:Saro_3602 amidase; amidase 3580780 6410995 Rpal_3322 Rhodopseudomonas palustris TIE-1 amidase YP_001992299.1 3579350 R 395960 CDS YP_001992300.1 192291695 6410996 complement(3580980..3581969) 1 NC_011004.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bbt:BBta_4121 phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 3581969 6410996 Rpal_3323 Rhodopseudomonas palustris TIE-1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001992300.1 3580980 R 395960 CDS YP_001992301.1 192291696 6410997 complement(3582078..3582977) 1 NC_011004.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr4275 hypothetical transport protein; hypothetical protein 3582977 6410997 Rpal_3324 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992301.1 3582078 R 395960 CDS YP_001992302.1 192291697 6410998 3583642..3587415 1 NC_011004.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3587415 6410998 Rpal_3325 Rhodopseudomonas palustris TIE-1 ribonucleotide-diphosphate reductase subunit alpha YP_001992302.1 3583642 D 395960 CDS YP_001992303.1 192291698 6410999 3587744..3589258 1 NC_011004.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mex:Mext_1865 CMP/dCMP deaminase zinc-binding; zinc-binding CMP/dCMP deaminase 3589258 6410999 Rpal_3326 Rhodopseudomonas palustris TIE-1 zinc-binding CMP/dCMP deaminase YP_001992303.1 3587744 D 395960 CDS YP_001992304.1 192291699 6411000 3589422..3589670 1 NC_011004.1 KEGG: nwi:Nwi_1574 hypothetical protein; hypothetical protein 3589670 6411000 Rpal_3327 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992304.1 3589422 D 395960 CDS YP_001992305.1 192291700 6411001 complement(3589772..3590044) 1 NC_011004.1 hypothetical protein 3590044 6411001 Rpal_3328 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992305.1 3589772 R 395960 CDS YP_001992306.1 192291701 6411002 3590570..3591151 1 NC_011004.1 hypothetical protein 3591151 6411002 Rpal_3329 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992306.1 3590570 D 395960 CDS YP_001992307.1 192291702 6411003 3591985..3592464 1 NC_011004.1 hypothetical protein 3592464 6411003 Rpal_3330 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992307.1 3591985 D 395960 CDS YP_001992308.1 192291703 6411004 3592769..3593377 1 NC_011004.1 hypothetical protein 3593377 6411004 Rpal_3331 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992308.1 3592769 D 395960 CDS YP_001992309.1 192291704 6411005 complement(3594354..3595571) 1 NC_011004.1 KEGG: ret:RHE_CH01107 hypothetical protein; hypothetical protein 3595571 6411005 Rpal_3332 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992309.1 3594354 R 395960 CDS YP_001992310.1 192291705 6411006 complement(3595583..3596422) 1 NC_011004.1 KEGG: rci:RRC34 hypothetical protein; hypothetical protein 3596422 6411006 Rpal_3333 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992310.1 3595583 R 395960 CDS YP_001992311.1 192291706 6411007 complement(3596427..3596777) 1 NC_011004.1 hypothetical protein 3596777 6411007 Rpal_3334 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992311.1 3596427 R 395960 CDS YP_001992312.1 192291707 6411008 complement(3596774..3597217) 1 NC_011004.1 KEGG: xau:Xaut_3722 hypothetical protein; hypothetical protein 3597217 6411008 Rpal_3335 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992312.1 3596774 R 395960 CDS YP_001992313.1 192291708 6411009 complement(3597233..3598210) 1 NC_011004.1 KEGG: smd:Smed_1639 hypothetical protein; hypothetical protein 3598210 6411009 Rpal_3336 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992313.1 3597233 R 395960 CDS YP_001992314.1 192291709 6411010 complement(3598204..3598554) 1 NC_011004.1 KEGG: acr:Acry_0904 peptidase M23B; peptidase M23B 3598554 6411010 Rpal_3337 Rhodopseudomonas palustris TIE-1 peptidase M23B YP_001992314.1 3598204 R 395960 CDS YP_001992315.1 192291710 6411011 complement(3598554..3598991) 1 NC_011004.1 hypothetical protein 3598991 6411011 Rpal_3338 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992315.1 3598554 R 395960 CDS YP_001992316.1 192291711 6411012 complement(3598996..3599433) 1 NC_011004.1 hypothetical protein 3599433 6411012 Rpal_3339 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992316.1 3598996 R 395960 CDS YP_001992317.1 192291712 6411013 complement(3599430..3599846) 1 NC_011004.1 hypothetical protein 3599846 6411013 Rpal_3340 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992317.1 3599430 R 395960 CDS YP_001992318.1 192291713 6411014 complement(3599855..3600244) 1 NC_011004.1 hypothetical protein 3600244 6411014 Rpal_3341 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992318.1 3599855 R 395960 CDS YP_001992319.1 192291714 6411015 complement(3600241..3602790) 1 NC_011004.1 KEGG: rsh:Rsph17029_0630 hypothetical protein; hypothetical protein 3602790 6411015 Rpal_3342 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992319.1 3600241 R 395960 CDS YP_001992320.1 192291715 6411016 complement(3602792..3603265) 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_5148 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3603265 6411016 Rpal_3343 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001992320.1 3602792 R 395960 CDS YP_001992321.1 192291716 6411017 complement(3603265..3603915) 1 NC_011004.1 KEGG: rsp:RSP_2992 hypothetical protein; hypothetical protein 3603915 6411017 Rpal_3344 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992321.1 3603265 R 395960 CDS YP_001992322.1 192291717 6411018 complement(3603912..3604535) 1 NC_011004.1 KEGG: rsq:Rsph17025_2088 hypothetical protein; hypothetical protein 3604535 6411018 Rpal_3345 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992322.1 3603912 R 395960 CDS YP_001992323.1 192291718 6411019 complement(3604532..3606580) 1 NC_011004.1 KEGG: nha:Nham_1606 hypothetical protein; hypothetical protein 3606580 6411019 Rpal_3346 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992323.1 3604532 R 395960 CDS YP_001992324.1 192291719 6411020 complement(3606583..3606924) 1 NC_011004.1 KEGG: rsq:Rsph17025_2090 hypothetical protein; hypothetical protein 3606924 6411020 Rpal_3347 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992324.1 3606583 R 395960 CDS YP_001992325.1 192291720 6411021 complement(3607017..3607346) 1 NC_011004.1 KEGG: rsq:Rsph17025_2091 hypothetical protein; hypothetical protein 3607346 6411021 Rpal_3348 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992325.1 3607017 R 395960 CDS YP_001992326.1 192291721 6411022 complement(3607359..3608300) 1 NC_011004.1 KEGG: rsq:Rsph17025_2092 hypothetical protein; hypothetical protein 3608300 6411022 Rpal_3349 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992326.1 3607359 R 395960 CDS YP_001992327.1 192291722 6411023 complement(3608303..3608473) 1 NC_011004.1 hypothetical protein 3608473 6411023 Rpal_3350 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992327.1 3608303 R 395960 CDS YP_001992328.1 192291723 6411024 complement(3608470..3608916) 1 NC_011004.1 KEGG: rsq:Rsph17025_2093 hypothetical protein; hypothetical protein 3608916 6411024 Rpal_3351 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992328.1 3608470 R 395960 CDS YP_001992329.1 192291724 6411025 complement(3608913..3609473) 1 NC_011004.1 TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis ( tail completion) protein; KEGG: pol:Bpro_3785 phage virion morphogenesis ( tail completion) protein; phage virion morphogenesis protein 3609473 6411025 Rpal_3352 Rhodopseudomonas palustris TIE-1 phage virion morphogenesis protein YP_001992329.1 3608913 R 395960 CDS YP_001992330.1 192291725 6411026 complement(3609473..3609901) 1 NC_011004.1 PFAM: protein of unknown function DUF1320; KEGG: rsq:Rsph17025_2094 protein of unknown function DUF1320; hypothetical protein 3609901 6411026 Rpal_3353 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992330.1 3609473 R 395960 CDS YP_001992331.1 192291726 6411027 complement(3609906..3610232) 1 NC_011004.1 hypothetical protein 3610232 6411027 Rpal_3354 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992331.1 3609906 R 395960 CDS YP_001992332.1 192291727 6411029 complement(3610414..3610875) 1 NC_011004.1 KEGG: son:SO_0676 hypothetical protein; hypothetical protein 3610875 6411029 Rpal_3355 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992332.1 3610414 R 395960 CDS YP_001992333.1 192291728 6411030 complement(3610887..3611777) 1 NC_011004.1 KEGG: rsq:Rsph17025_2096 Mu-like prophage major head subunit gpT-like protein; Mu-like prophage major head subunit gpT-like protein 3611777 6411030 Rpal_3356 Rhodopseudomonas palustris TIE-1 Mu-like prophage major head subunit gpT-like protein YP_001992333.1 3610887 R 395960 CDS YP_001992334.1 192291729 6411031 complement(3611830..3612606) 1 NC_011004.1 KEGG: rsq:Rsph17025_2097 hypothetical protein; hypothetical protein 3612606 6411031 Rpal_3357 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992334.1 3611830 R 395960 CDS YP_001992335.1 192291730 6411032 complement(3612762..3613868) 1 NC_011004.1 KEGG: rsq:Rsph17025_2098 Mu-like prophage I protein-like protein; Mu-like prophage I protein-like protein 3613868 6411032 Rpal_3358 Rhodopseudomonas palustris TIE-1 Mu-like prophage I protein-like protein YP_001992335.1 3612762 R 395960 CDS YP_001992336.1 192291731 6411033 complement(3614253..3614708) 1 NC_011004.1 hypothetical protein 3614708 6411033 Rpal_3359 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992336.1 3614253 R 395960 CDS YP_001992337.1 192291732 6411034 complement(3614723..3615367) 1 NC_011004.1 PFAM: peptidase S24 and S26 domain protein; KEGG: bbt:BBta_5832 LexA repressor; phage repressor 3615367 6411034 Rpal_3360 Rhodopseudomonas palustris TIE-1 phage repressor YP_001992337.1 3614723 R 395960 CDS YP_001992338.1 192291733 6411035 3615468..3615728 1 NC_011004.1 KEGG: xau:Xaut_3691 transcriptional regulator, XRE family; hypothetical protein 3615728 6411035 Rpal_3361 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992338.1 3615468 D 395960 CDS YP_001992339.1 192291734 6411036 3615725..3615997 1 NC_011004.1 hypothetical protein 3615997 6411036 Rpal_3362 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992339.1 3615725 D 395960 CDS YP_001992340.1 192291735 6411037 3615994..3616449 1 NC_011004.1 KEGG: xau:Xaut_4526 hypothetical protein; hypothetical protein 3616449 6411037 Rpal_3363 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992340.1 3615994 D 395960 CDS YP_001992341.1 192291736 6411038 3616446..3616775 1 NC_011004.1 hypothetical protein 3616775 6411038 Rpal_3364 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992341.1 3616446 D 395960 CDS YP_001992342.1 192291737 6411039 3616795..3618951 1 NC_011004.1 PFAM: Integrase catalytic region; MuA-transposase/repressor protein CI DNA-binding; Transposase-like Mu; KEGG: azc:AZC_2128 transposase protein A; integrase catalytic subunit 3618951 6411039 Rpal_3365 Rhodopseudomonas palustris TIE-1 integrase catalytic subunit YP_001992342.1 3616795 D 395960 CDS YP_001992343.1 192291738 6411040 3618984..3619421 1 NC_011004.1 hypothetical protein 3619421 6411040 Rpal_3366 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992343.1 3618984 D 395960 CDS YP_001992344.1 192291739 6411041 3619450..3620244 1 NC_011004.1 KEGG: azc:AZC_2129 transposase protein B; transposase protein B 3620244 6411041 Rpal_3367 Rhodopseudomonas palustris TIE-1 transposase protein B YP_001992344.1 3619450 D 395960 CDS YP_001992345.1 192291740 6411042 3620241..3620621 1 NC_011004.1 KEGG: azc:AZC_2130 hypothetical protein; hypothetical protein 3620621 6411042 Rpal_3368 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992345.1 3620241 D 395960 CDS YP_001992346.1 192291741 6411043 3620618..3621013 1 NC_011004.1 KEGG: mag:amb0449 hypothetical protein; transcriptional regulator 3621013 6411043 Rpal_3369 Rhodopseudomonas palustris TIE-1 transcriptional regulator YP_001992346.1 3620618 D 395960 CDS YP_001992347.1 192291742 6411044 3621003..3621290 1 NC_011004.1 hypothetical protein 3621290 6411044 Rpal_3370 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992347.1 3621003 D 395960 CDS YP_001992348.1 192291743 6411045 3621287..3621640 1 NC_011004.1 hypothetical protein 3621640 6411045 Rpal_3371 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992348.1 3621287 D 395960 CDS YP_001992349.1 192291744 6411046 3621642..3622190 1 NC_011004.1 PFAM: Mu Gam family protein; KEGG: mag:amb0454 Mu-like prophage FluMu host-nuclease inhibitor protein Gam; Mu Gam family protein 3622190 6411046 Rpal_3372 Rhodopseudomonas palustris TIE-1 Mu Gam family protein YP_001992349.1 3621642 D 395960 CDS YP_001992350.1 192291745 6411047 3622187..3622582 1 NC_011004.1 PFAM: LexA DNA-binding domain protein; KEGG: zmo:ZMO0199 LexA repressor; LexA family transcriptional repressor 3622582 6411047 Rpal_3373 Rhodopseudomonas palustris TIE-1 LexA family transcriptional repressor YP_001992350.1 3622187 D 395960 CDS YP_001992351.1 192291746 6411048 3622579..3623076 1 NC_011004.1 PFAM: Chromosomal replication initiator DnaA domain; KEGG: gbe:GbCGDNIH1_0161 chromosomal replication initiator protein DnaA; Chromosomal replication initiator DnaA domain 3623076 6411048 Rpal_3374 Rhodopseudomonas palustris TIE-1 Chromosomal replication initiator DnaA domain YP_001992351.1 3622579 D 395960 CDS YP_001992352.1 192291747 6411049 3623073..3623774 1 NC_011004.1 PFAM: protein of unknown function DUF1018; KEGG: azc:AZC_2134 Mu-like prophage protein GP16; hypothetical protein 3623774 6411049 Rpal_3375 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992352.1 3623073 D 395960 CDS YP_001992353.1 192291748 6411050 3623776..3624174 1 NC_011004.1 hypothetical protein 3624174 6411050 Rpal_3376 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992353.1 3623776 D 395960 CDS YP_001992354.1 192291749 6411051 3624178..3624759 1 NC_011004.1 PFAM: GcrA cell cycle regulator; KEGG: nwi:Nwi_0512 GcrA cell cycle regulator; GcrA cell cycle regulator 3624759 6411051 Rpal_3377 Rhodopseudomonas palustris TIE-1 GcrA cell cycle regulator YP_001992354.1 3624178 D 395960 CDS YP_001992355.1 192291750 6411052 3624746..3624925 1 NC_011004.1 hypothetical protein 3624925 6411052 Rpal_3378 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992355.1 3624746 D 395960 CDS YP_001992356.1 192291751 6411053 3624922..3625134 1 NC_011004.1 KEGG: bbr:BB1671 phage-related hypothetical protein; phage-like protein 3625134 6411053 Rpal_3379 Rhodopseudomonas palustris TIE-1 phage-like protein YP_001992356.1 3624922 D 395960 CDS YP_001992357.1 192291752 6411054 3625131..3625370 1 NC_011004.1 KEGG: rsq:Rsph17025_2113 hypothetical protein; hypothetical protein 3625370 6411054 Rpal_3380 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992357.1 3625131 D 395960 CDS YP_001992358.1 192291753 6411055 3625367..3625762 1 NC_011004.1 KEGG: nha:Nham_1609 hypothetical protein; hypothetical protein 3625762 6411055 Rpal_3381 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992358.1 3625367 D 395960 CDS YP_001992359.1 192291754 6411056 3625869..3626783 1 NC_011004.1 PFAM: protein of unknown function DUF847; KEGG: mlo:mlr8035 hypothetical protein; hypothetical protein 3626783 6411056 Rpal_3382 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992359.1 3625869 D 395960 CDS YP_001992360.1 192291755 6411057 3626780..3627328 1 NC_011004.1 KEGG: nha:Nham_3316 hypothetical protein; hypothetical protein 3627328 6411057 Rpal_3383 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992360.1 3626780 D 395960 CDS YP_001992361.1 192291756 6411058 3627276..3627518 1 NC_011004.1 hypothetical protein 3627518 6411058 Rpal_3384 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992361.1 3627276 D 395960 CDS YP_001992362.1 192291757 6411059 3627521..3627901 1 NC_011004.1 KEGG: azc:AZC_2139 hypothetical protein; hypothetical protein 3627901 6411059 Rpal_3385 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992362.1 3627521 D 395960 CDS YP_001992363.1 192291758 6411060 3627898..3628194 1 NC_011004.1 KEGG: azc:AZC_2140 hypothetical protein; hypothetical protein 3628194 6411060 Rpal_3386 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992363.1 3627898 D 395960 CDS YP_001992364.1 192291759 6411061 3628199..3628819 1 NC_011004.1 KEGG: azc:AZC_2141 Mu-like prophage FluMu protein GP27; Mu-like prophage FluMu protein GP27 3628819 6411061 Rpal_3387 Rhodopseudomonas palustris TIE-1 Mu-like prophage FluMu protein GP27 YP_001992364.1 3628199 D 395960 CDS YP_001992365.1 192291760 6411062 3628816..3629028 1 NC_011004.1 hypothetical protein 3629028 6411062 Rpal_3388 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992365.1 3628816 D 395960 CDS YP_001992366.1 192291761 6411063 3629051..3629548 1 NC_011004.1 KEGG: nwi:Nwi_1551 hypothetical protein; hypothetical protein 3629548 6411063 Rpal_3389 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992366.1 3629051 D 395960 CDS YP_001992367.1 192291762 6411064 3629545..3629889 1 NC_011004.1 hypothetical protein 3629889 6411064 Rpal_3390 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992367.1 3629545 D 395960 CDS YP_001992368.1 192291763 6411065 3629886..3631520 1 NC_011004.1 KEGG: azc:AZC_2142 Mu-like prophage FluMu protein GP28; Mu-like prophage FluMu protein GP28 3631520 6411065 Rpal_3391 Rhodopseudomonas palustris TIE-1 Mu-like prophage FluMu protein GP28 YP_001992368.1 3629886 D 395960 CDS YP_001992369.1 192291764 6411066 3631517..3631744 1 NC_011004.1 hypothetical protein 3631744 6411066 Rpal_3392 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992369.1 3631517 D 395960 CDS YP_001992370.1 192291765 6411067 3631744..3633375 1 NC_011004.1 PFAM: protein of unknown function DUF935; KEGG: rsq:Rsph17025_2101 protein of unknown function DUF935; hypothetical protein 3633375 6411067 Rpal_3393 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992370.1 3631744 D 395960 CDS YP_001992371.1 192291766 6411068 3633368..3634132 1 NC_011004.1 TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; KEGG: hdu:HD1557 bacteriophage Mu GP30-like protein; phage head morphogenesis protein 3634132 6411068 Rpal_3394 Rhodopseudomonas palustris TIE-1 phage head morphogenesis protein YP_001992371.1 3633368 D 395960 CDS YP_001992372.1 192291767 6411069 complement(3634966..3635310) 1 NC_011004.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: cvi:CV_0893 probable 5-carboxymethyl-2-hydroxymuconate D-isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase 3635310 6411069 Rpal_3395 Rhodopseudomonas palustris TIE-1 5-carboxymethyl-2-hydroxymuconate isomerase YP_001992372.1 3634966 R 395960 CDS YP_001992373.1 192291768 6411070 3635504..3636349 1 NC_011004.1 KEGG: bja:bll3359 hypothetical protein; hypothetical protein 3636349 6411070 Rpal_3396 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992373.1 3635504 D 395960 CDS YP_001992374.1 192291769 6411071 3636475..3637014 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bay:RBAM_024110 YrkN; N-acetyltransferase GCN5 3637014 6411071 Rpal_3397 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001992374.1 3636475 D 395960 CDS YP_001992375.1 192291770 6411072 3637076..3638056 1 NC_011004.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ajs:Ajs_1159 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase zinc-binding domain-containing protein 3638056 6411072 Rpal_3398 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase zinc-binding domain-containing protein YP_001992375.1 3637076 D 395960 CDS YP_001992376.1 192291771 6411073 complement(3638191..3638670) 1 NC_011004.1 KEGG: bbt:BBta_3325 hypothetical protein; hypothetical protein 3638670 6411073 Rpal_3399 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992376.1 3638191 R 395960 CDS YP_001992377.1 192291772 6411074 complement(3638804..3639100) 1 NC_011004.1 KEGG: bja:bll8056 hypothetical protein; hypothetical protein 3639100 6411074 Rpal_3400 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992377.1 3638804 R 395960 CDS YP_001992378.1 192291773 6411075 complement(3639425..3639997) 1 NC_011004.1 KEGG: bra:BRADO3437 hypothetical protein; hypothetical protein 3639997 6411075 Rpal_3401 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992378.1 3639425 R 395960 CDS YP_001992379.1 192291774 6411076 complement(3640139..3640792) 1 NC_011004.1 PFAM: protein of unknown function UPF0126; KEGG: nmu:Nmul_A0854 hypothetical protein; hypothetical protein 3640792 6411076 Rpal_3402 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992379.1 3640139 R 395960 CDS YP_001992380.1 192291775 6411077 complement(3640925..3641803) 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV2178 transcriptional regulator, LysR family; LysR family transcriptional regulator 3641803 6411077 Rpal_3403 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001992380.1 3640925 R 395960 CDS YP_001992381.1 192291776 6411078 3641912..3643483 1 NC_011004.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: azc:AZC_1309 NADH dehydrogenase; NADH/ubiquinone/plastoquinone 3643483 6411078 Rpal_3404 Rhodopseudomonas palustris TIE-1 NADH/ubiquinone/plastoquinone YP_001992381.1 3641912 D 395960 CDS YP_001992382.1 192291777 6411079 3643505..3645931 1 NC_011004.1 KEGG: azc:AZC_1310 hypothetical protein; hypothetical protein 3645931 6411079 Rpal_3405 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992382.1 3643505 D 395960 CDS YP_001992383.1 192291778 6411080 3646117..3646377 1 NC_011004.1 KEGG: bja:bsr6783 hypothetical protein; hypothetical protein 3646377 6411080 Rpal_3406 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992383.1 3646117 D 395960 CDS YP_001992384.1 192291779 6411081 3646381..3647304 1 NC_011004.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: bja:blr6784 dihydrodipicolinate synthase; dihydrodipicolinate synthase 3647304 6411081 Rpal_3407 Rhodopseudomonas palustris TIE-1 dihydrodipicolinate synthase YP_001992384.1 3646381 D 395960 CDS YP_001992385.1 192291780 6411082 complement(3647336..3647782) 1 NC_011004.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: pla:Plav_0190 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 3647782 6411082 Rpal_3408 Rhodopseudomonas palustris TIE-1 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_001992385.1 3647336 R 395960 CDS YP_001992386.1 192291781 6411083 complement(3647806..3648489) 1 NC_011004.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:bll6775 two-component response regulator; winged helix family two component transcriptional regulator 3648489 6411083 Rpal_3409 Rhodopseudomonas palustris TIE-1 winged helix family two component transcriptional regulator YP_001992386.1 3647806 R 395960 CDS YP_001992387.1 192291782 6411084 complement(3648495..3651218) 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: bbt:BBta_6335 sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation; osmosensitive K+ channel signal transduction histidine kinase 3651218 6411084 Rpal_3410 Rhodopseudomonas palustris TIE-1 osmosensitive K+ channel signal transduction histidine kinase YP_001992387.1 3648495 R 395960 CDS YP_001992388.1 192291783 6411085 complement(3651264..3651869) 1 NC_011004.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 3651869 6411085 Rpal_3411 Rhodopseudomonas palustris TIE-1 potassium-transporting ATPase subunit C YP_001992388.1 3651264 R 395960 CDS YP_001992389.1 192291784 6411086 complement(3651882..3654002) 1 NC_011004.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 3654002 6411086 Rpal_3412 Rhodopseudomonas palustris TIE-1 potassium-transporting ATPase subunit B YP_001992389.1 3651882 R 395960 CDS YP_001992390.1 192291785 6411087 complement(3654021..3655724) 1 NC_011004.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 3655724 6411087 Rpal_3413 Rhodopseudomonas palustris TIE-1 potassium-transporting ATPase subunit A YP_001992390.1 3654021 R 395960 CDS YP_001992391.1 192291786 6411088 complement(3655764..3655883) 1 NC_011004.1 TIGRFAM: K+-transporting ATPase, F subunit; PFAM: K+transporting ATPase F subunit; KEGG: bra:BRADO5831 conserved hypothetical protein; potassium-transporting ATPase, KdpF subunit; K+-transporting ATPase subunit F 3655883 6411088 Rpal_3414 Rhodopseudomonas palustris TIE-1 K+-transporting ATPase subunit F YP_001992391.1 3655764 R 395960 CDS YP_001992392.1 192291787 6411089 3656655..3657215 1 NC_011004.1 hypothetical protein 3657215 6411089 Rpal_3415 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992392.1 3656655 D 395960 CDS YP_001992393.1 192291788 6411090 3657253..3657963 1 NC_011004.1 hypothetical protein 3657963 6411090 Rpal_3416 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992393.1 3657253 D 395960 CDS YP_001992394.1 192291789 6411091 complement(3657953..3659857) 1 NC_011004.1 PFAM: K potassium transporter; KEGG: bra:BRADO4684 low affinity potassium transporter (Kup family); K potassium transporter 3659857 6411091 Rpal_3417 Rhodopseudomonas palustris TIE-1 K potassium transporter YP_001992394.1 3657953 R 395960 CDS YP_001992395.1 192291790 6411092 3660363..3660518 1 NC_011004.1 PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1407 antenna complex, alpha/beta subunit; antenna complex alpha/beta subunit 3660518 6411092 Rpal_3418 Rhodopseudomonas palustris TIE-1 antenna complex alpha/beta subunit YP_001992395.1 3660363 D 395960 CDS YP_001992396.1 192291791 6411093 3660531..3660728 1 NC_011004.1 PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1408 antenna complex, alpha/beta subunit; antenna complex alpha/beta subunit 3660728 6411093 Rpal_3419 Rhodopseudomonas palustris TIE-1 antenna complex alpha/beta subunit YP_001992396.1 3660531 D 395960 CDS YP_001992397.1 192291792 6411094 complement(3661250..3661888) 1 NC_011004.1 KEGG: nve:NEMVE_v1g94016 predicted protein Pfam: Extensin_2 PROSITE: LEU_RICH PRO_RICH; hypothetical protein 3661888 6411094 Rpal_3420 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992397.1 3661250 R 395960 CDS YP_001992398.1 192291793 6411095 complement(3662039..3662218) 1 NC_011004.1 PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1408 antenna complex, alpha/beta subunit; antenna complex alpha/beta subunit 3662218 6411095 Rpal_3421 Rhodopseudomonas palustris TIE-1 antenna complex alpha/beta subunit YP_001992398.1 3662039 R 395960 CDS YP_001992399.1 192291794 6411096 complement(3662231..3662386) 1 NC_011004.1 PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1407 antenna complex, alpha/beta subunit; antenna complex alpha/beta subunit 3662386 6411096 Rpal_3422 Rhodopseudomonas palustris TIE-1 antenna complex alpha/beta subunit YP_001992399.1 3662231 R 395960 CDS YP_001992400.1 192291795 6411097 3662806..3663513 1 NC_011004.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bbt:BBta_3079 two-component transcriptional regulator, LuxR family; LuxR family transcriptional regulator 3663513 6411097 Rpal_3423 Rhodopseudomonas palustris TIE-1 LuxR family transcriptional regulator YP_001992400.1 3662806 D 395960 CDS YP_001992401.1 192291796 6411098 3663737..3666013 1 NC_011004.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: ava:Ava_1003 multi-sensor signal transduction histidine kinase; GAF sensor signal transduction histidine kinase 3666013 6411098 Rpal_3424 Rhodopseudomonas palustris TIE-1 GAF sensor signal transduction histidine kinase YP_001992401.1 3663737 D 395960 CDS YP_001992402.1 192291797 6411099 3666017..3668344 1 NC_011004.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: ana:all2899 phytochrome-like protein, two-component sensor; GAF sensor signal transduction histidine kinase 3668344 6411099 Rpal_3425 Rhodopseudomonas palustris TIE-1 GAF sensor signal transduction histidine kinase YP_001992402.1 3666017 D 395960 CDS YP_001992403.1 192291798 6411100 3668345..3668809 1 NC_011004.1 PFAM: response regulator receiver; KEGG: amr:AM1_1726 response regulator; response regulator receiver protein 3668809 6411100 Rpal_3426 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001992403.1 3668345 D 395960 CDS YP_001992404.1 192291799 6411101 3668806..3669942 1 NC_011004.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: bbt:BBta_3080 bacteriophytochrome; response regulator receiver sensor signal transduction histidine kinase 3669942 6411101 Rpal_3427 Rhodopseudomonas palustris TIE-1 response regulator receiver sensor signal transduction histidine kinase YP_001992404.1 3668806 D 395960 CDS YP_001992405.1 192291800 6411102 complement(3670049..3673279) 1 NC_011004.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pla:Plav_0714 transporter hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3673279 6411102 Rpal_3428 Rhodopseudomonas palustris TIE-1 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_001992405.1 3670049 R 395960 CDS YP_001992406.1 192291801 6411103 complement(3673409..3674608) 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aav:Aave_1362 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit 3674608 6411103 Rpal_3429 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001992406.1 3673409 R 395960 CDS YP_001992407.1 192291802 6411104 3674806..3675393 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: afw:Anae109_3254 transcriptional regulator, TetR family; TetR family transcriptional regulator 3675393 6411104 Rpal_3430 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001992407.1 3674806 D 395960 CDS YP_001992408.1 192291803 6411106 3676823..3677809 1 NC_011004.1 PFAM: aldo/keto reductase; KEGG: azc:AZC_4153 aldo/keto reductase; aldo/keto reductase 3677809 6411106 Rpal_3432 Rhodopseudomonas palustris TIE-1 aldo/keto reductase YP_001992408.1 3676823 D 395960 CDS YP_001992409.1 192291804 6411107 complement(3677831..3678229) 1 NC_011004.1 KEGG: bja:bll5535 hypothetical protein; hypothetical protein 3678229 6411107 Rpal_3433 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992409.1 3677831 R 395960 CDS YP_001992410.1 192291805 6411108 3678468..3678704 1 NC_011004.1 KEGG: bja:bsr4396 hypothetical protein; hypothetical protein 3678704 6411108 Rpal_3434 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992410.1 3678468 D 395960 CDS YP_001992411.1 192291806 6411109 3678750..3679400 1 NC_011004.1 PFAM: Abortive infection protein; KEGG: ava:Ava_C0052 abortive infection protein; Abortive infection protein 3679400 6411109 Rpal_3435 Rhodopseudomonas palustris TIE-1 Abortive infection protein YP_001992411.1 3678750 D 395960 CDS YP_001992412.1 192291807 6411110 complement(3679410..3681272) 1 NC_011004.1 PFAM: K potassium transporter; KEGG: dar:Daro_1184 K+ potassium transporter; K potassium transporter 3681272 6411110 Rpal_3436 Rhodopseudomonas palustris TIE-1 K potassium transporter YP_001992412.1 3679410 R 395960 CDS YP_001992413.1 192291808 6411111 complement(3681533..3682369) 1 NC_011004.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: bja:blr4172 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 3682369 6411111 Rpal_3437 Rhodopseudomonas palustris TIE-1 Sel1 domain-containing protein repeat-containing protein YP_001992413.1 3681533 R 395960 CDS YP_001992414.1 192291809 6411112 3682670..3682843 1 NC_011004.1 PFAM: protein of unknown function DUF1328; KEGG: bja:bsl5717 hypothetical protein; hypothetical protein 3682843 6411112 Rpal_3438 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992414.1 3682670 D 395960 CDS YP_001992415.1 192291810 6411113 3683019..3683315 1 NC_011004.1 KEGG: nwi:Nwi_1581 hypothetical protein; hypothetical protein 3683315 6411113 Rpal_3439 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992415.1 3683019 D 395960 CDS YP_001992416.1 192291811 6411114 complement(3683416..3684039) 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bra:BRADO3385 acetyltransferase (GNAT) family; N-acetyltransferase GCN5 3684039 6411114 Rpal_3440 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001992416.1 3683416 R 395960 CDS YP_001992417.1 192291812 6411115 complement(3684294..3684692) 1 NC_011004.1 PFAM: thioesterase superfamily protein; KEGG: bra:BRADO3384 conserved hypothetical protein; phenylacetic acid degradation-related protein; thioesterase superfamily protein 3684692 6411115 Rpal_3441 Rhodopseudomonas palustris TIE-1 thioesterase superfamily protein YP_001992417.1 3684294 R 395960 CDS YP_001992418.1 192291813 6411116 complement(3684840..3686120) 1 NC_011004.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 3686120 6411116 Rpal_3442 Rhodopseudomonas palustris TIE-1 acetylornithine deacetylase YP_001992418.1 3684840 R 395960 CDS YP_001992419.1 192291814 6411117 3686253..3686516 1 NC_011004.1 KEGG: bra:BRADO3381 hypothetical protein; hypothetical protein 3686516 6411117 Rpal_3443 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992419.1 3686253 D 395960 CDS YP_001992420.1 192291815 6411118 complement(3686545..3686940) 1 NC_011004.1 hypothetical protein 3686940 6411118 Rpal_3444 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992420.1 3686545 R 395960 CDS YP_001992421.1 192291816 6411119 complement(3687073..3687321) 1 NC_011004.1 hypothetical protein 3687321 6411119 Rpal_3445 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992421.1 3687073 R 395960 CDS YP_001992422.1 192291817 6411120 3687777..3688037 1 NC_011004.1 hypothetical protein 3688037 6411120 Rpal_3446 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992422.1 3687777 D 395960 CDS YP_001992423.1 192291818 6411121 complement(3688200..3688748) 1 NC_011004.1 PFAM: CreA family protein; KEGG: nha:Nham_2105 CreA; CreA family protein 3688748 6411121 Rpal_3447 Rhodopseudomonas palustris TIE-1 CreA family protein YP_001992423.1 3688200 R 395960 CDS YP_001992424.1 192291819 6411122 3688960..3690573 1 NC_011004.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:bll4150 hypothetical protein; hypothetical protein 3690573 6411122 Rpal_3448 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992424.1 3688960 D 395960 CDS YP_001992425.1 192291820 6411123 3690727..3691665 1 NC_011004.1 PFAM: polysaccharide deacetylase; KEGG: nha:Nham_2107 polysaccharide deacetylase; polysaccharide deacetylase 3691665 6411123 Rpal_3449 Rhodopseudomonas palustris TIE-1 polysaccharide deacetylase YP_001992425.1 3690727 D 395960 CDS YP_001992426.1 192291821 6411124 3691703..3692266 1 NC_011004.1 KEGG: nha:Nham_2108 hypothetical protein; hypothetical protein 3692266 6411124 Rpal_3450 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992426.1 3691703 D 395960 CDS YP_001992427.1 192291822 6411125 complement(3692274..3692711) 1 NC_011004.1 PFAM: DoxX family protein; KEGG: nha:Nham_2109 DoxX; DoxX family protein 3692711 6411125 Rpal_3451 Rhodopseudomonas palustris TIE-1 DoxX family protein YP_001992427.1 3692274 R 395960 CDS YP_001992428.1 192291823 6411126 complement(3692817..3695126) 1 NC_011004.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 3695126 6411126 Rpal_3452 Rhodopseudomonas palustris TIE-1 malic enzyme YP_001992428.1 3692817 R 395960 CDS YP_001992429.1 192291824 6411127 complement(3695172..3696947) 1 NC_011004.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 3696947 aspS 6411127 aspS Rhodopseudomonas palustris TIE-1 aspartyl-tRNA synthetase YP_001992429.1 3695172 R 395960 CDS YP_001992430.1 192291825 6411128 3697207..3698685 1 NC_011004.1 PFAM: protein of unknown function UPF0061; KEGG: bra:BRADO3358 hypothetical protein; hypothetical protein 3698685 6411128 Rpal_3454 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992430.1 3697207 D 395960 CDS YP_001992431.1 192291826 6411129 3698789..3699967 1 NC_011004.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: bra:BRADO3356 ribonuclease D (RNase D); ribonuclease D 3699967 6411129 Rpal_3455 Rhodopseudomonas palustris TIE-1 ribonuclease D YP_001992431.1 3698789 D 395960 CDS YP_001992432.1 192291827 6411130 3699964..3700887 1 NC_011004.1 PFAM: protein of unknown function UPF0187; KEGG: xau:Xaut_4544 protein of unknown function UPF0187; hypothetical protein 3700887 6411130 Rpal_3456 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992432.1 3699964 D 395960 CDS YP_001992433.1 192291828 6411131 complement(3700909..3702414) 1 NC_011004.1 PFAM: Ppx/GppA phosphatase; KEGG: bja:bll4121 hypothetical protein; Ppx/GppA phosphatase 3702414 6411131 Rpal_3457 Rhodopseudomonas palustris TIE-1 Ppx/GppA phosphatase YP_001992433.1 3700909 R 395960 CDS YP_001992434.1 192291829 6411132 complement(3702427..3704637) 1 NC_011004.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 3704637 6411132 Rpal_3458 Rhodopseudomonas palustris TIE-1 polyphosphate kinase YP_001992434.1 3702427 R 395960 CDS YP_001992435.1 192291830 6411133 complement(3704788..3705465) 1 NC_011004.1 KEGG: bja:bll4123 hypothetical protein; hypothetical protein 3705465 6411133 Rpal_3459 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992435.1 3704788 R 395960 CDS YP_001992436.1 192291831 6411134 complement(3705508..3706137) 1 NC_011004.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: nha:Nham_2117 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 3706137 6411134 Rpal_3460 Rhodopseudomonas palustris TIE-1 CDP-alcohol phosphatidyltransferase YP_001992436.1 3705508 R 395960 CDS YP_001992437.1 192291832 6411135 3706320..3707393 1 NC_011004.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3707393 6411135 Rpal_3461 Rhodopseudomonas palustris TIE-1 phosphoribosylaminoimidazole synthetase YP_001992437.1 3706320 D 395960 CDS YP_001992438.1 192291833 6411136 3707402..3708055 1 NC_011004.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: bra:BRADO3345 phosphoribosylglycinamide formyltransferase (GarT) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase); phosphoribosylglycinamide formyltransferase 3708055 6411136 Rpal_3462 Rhodopseudomonas palustris TIE-1 phosphoribosylglycinamide formyltransferase YP_001992438.1 3707402 D 395960 CDS YP_001992439.1 192291834 6411137 complement(3708119..3708322) 1 NC_011004.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: nwi:Nwi_1599 cold-shock protein, DNA-binding; cold-shock DNA-binding domain-containing protein 3708322 6411137 Rpal_3463 Rhodopseudomonas palustris TIE-1 cold-shock DNA-binding domain-containing protein YP_001992439.1 3708119 R 395960 CDS YP_001992440.1 192291835 6411138 3708814..3709587 1 NC_011004.1 KEGG: bja:blr1556 hypothetical protein; Crp/Fnr family transcriptional regulator 3709587 6411138 Rpal_3464 Rhodopseudomonas palustris TIE-1 Crp/Fnr family transcriptional regulator YP_001992440.1 3708814 D 395960 CDS YP_001992441.1 192291836 6411139 complement(3709672..3710493) 1 NC_011004.1 KEGG: bja:blr4120 hypothetical protein; hypothetical protein 3710493 6411139 Rpal_3465 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992441.1 3709672 R 395960 CDS YP_001992442.1 192291837 6411140 complement(3710566..3710988) 1 NC_011004.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 3710988 ndk 6411140 ndk Rhodopseudomonas palustris TIE-1 nucleoside diphosphate kinase YP_001992442.1 3710566 R 395960 CDS YP_001992443.1 192291838 6411141 3711135..3713012 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2336 ABC transporter; ABC transporter 3713012 6411141 Rpal_3467 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001992443.1 3711135 D 395960 CDS YP_001992444.1 192291839 6411142 complement(3713016..3713555) 1 NC_011004.1 KEGG: nha:Nham_2337 hypothetical protein; hypothetical protein 3713555 6411142 Rpal_3468 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992444.1 3713016 R 395960 CDS YP_001992445.1 192291840 6411143 complement(3713686..3714138) 1 NC_011004.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 3714138 6411143 Rpal_3469 Rhodopseudomonas palustris TIE-1 DNA polymerase III subunit chi YP_001992445.1 3713686 R 395960 CDS YP_001992446.1 192291841 6411144 complement(3714149..3715651) 1 NC_011004.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 3715651 6411144 Rpal_3470 Rhodopseudomonas palustris TIE-1 leucyl aminopeptidase YP_001992446.1 3714149 R 395960 CDS YP_001992447.1 192291842 6411145 3716060..3717226 1 NC_011004.1 PFAM: permease YjgP/YjgQ family protein; KEGG: nha:Nham_2340 permease YjgP/YjgQ; YjgP/YjgQ family permease 3717226 6411145 Rpal_3471 Rhodopseudomonas palustris TIE-1 YjgP/YjgQ family permease YP_001992447.1 3716060 D 395960 CDS YP_001992448.1 192291843 6411146 3717237..3718325 1 NC_011004.1 PFAM: permease YjgP/YjgQ family protein; KEGG: nha:Nham_2341 permease YjgP/YjgQ; YjgP/YjgQ family permease 3718325 6411146 Rpal_3472 Rhodopseudomonas palustris TIE-1 YjgP/YjgQ family permease YP_001992448.1 3717237 D 395960 CDS YP_001992449.1 192291844 6411147 3718325..3720838 1 NC_011004.1 PFAM: organic solvent tolerance protein; KEGG: nha:Nham_2342 organic solvent tolerance protein; organic solvent tolerance protein 3720838 6411147 Rpal_3473 Rhodopseudomonas palustris TIE-1 organic solvent tolerance protein YP_001992449.1 3718325 D 395960 CDS YP_001992450.1 192291845 6411148 3720917..3721843 1 NC_011004.1 PFAM: SurA domain; KEGG: nha:Nham_2343 hypothetical protein; SurA domain 3721843 6411148 Rpal_3474 Rhodopseudomonas palustris TIE-1 SurA domain YP_001992450.1 3720917 D 395960 CDS YP_001992451.1 192291846 6411149 3721904..3722917 1 NC_011004.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3722917 pdxA 6411149 pdxA Rhodopseudomonas palustris TIE-1 4-hydroxythreonine-4-phosphate dehydrogenase YP_001992451.1 3721904 D 395960 CDS YP_001992452.1 192291847 6411150 3722914..3723777 1 NC_011004.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3723777 ksgA 6411150 ksgA Rhodopseudomonas palustris TIE-1 dimethyladenosine transferase YP_001992452.1 3722914 D 395960 CDS YP_001992453.1 192291848 6411151 3723794..3724852 1 NC_011004.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:bll4101 NAD-dependent alcohol dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 3724852 6411151 Rpal_3477 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase GroES domain-containing protein YP_001992453.1 3723794 D 395960 CDS YP_001992454.1 192291849 6411152 3725011..3726189 1 NC_011004.1 KEGG: bbt:BBta_2331 exported protein of unknown function; hypothetical protein 3726189 6411152 Rpal_3478 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992454.1 3725011 D 395960 CDS YP_001992455.1 192291850 6411153 complement(3726193..3726855) 1 NC_011004.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 3726855 gmk 6411153 gmk Rhodopseudomonas palustris TIE-1 guanylate kinase YP_001992455.1 3726193 R 395960 CDS YP_001992456.1 192291851 6411154 complement(3726858..3727745) 1 NC_011004.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: bja:blr4087 hypothetical protein; hypothetical protein 3727745 6411154 Rpal_3480 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992456.1 3726858 R 395960 CDS YP_001992457.1 192291852 6411155 complement(3727848..3729104) 1 NC_011004.1 PFAM: aminodeoxychorismate lyase; KEGG: nha:Nham_2350 aminodeoxychorismate lyase; aminodeoxychorismate lyase 3729104 6411155 Rpal_3481 Rhodopseudomonas palustris TIE-1 aminodeoxychorismate lyase YP_001992457.1 3727848 R 395960 CDS YP_001992458.1 192291853 6411156 complement(3729307..3730572) 1 NC_011004.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 3730572 6411156 Rpal_3482 Rhodopseudomonas palustris TIE-1 3-oxoacyl-(acyl carrier protein) synthase II YP_001992458.1 3729307 R 395960 CDS YP_001992459.1 192291854 6411157 complement(3730669..3730908) 1 NC_011004.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 3730908 acpP 6411157 acpP Rhodopseudomonas palustris TIE-1 acyl carrier protein YP_001992459.1 3730669 R 395960 CDS YP_001992460.1 192291855 6411158 complement(3731213..3731950) 1 NC_011004.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nha:Nham_2353 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 3731950 6411158 Rpal_3484 Rhodopseudomonas palustris TIE-1 3-oxoacyl-(acyl-carrier-protein) reductase YP_001992460.1 3731213 R 395960 CDS YP_001992461.1 192291856 6411159 complement(3731970..3732929) 1 NC_011004.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: bra:BRADO3310 malonyl CoA-acyl carrier protein transacylase (MCT); malonyl CoA-acyl carrier protein transacylase 3732929 6411159 Rpal_3485 Rhodopseudomonas palustris TIE-1 malonyl CoA-acyl carrier protein transacylase YP_001992461.1 3731970 R 395960 CDS YP_001992462.1 192291857 6411160 3733195..3734544 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rme:Rmet_3745 diguanylate cyclase (GGDEF domain); diguanylate cyclase 3734544 6411160 Rpal_3486 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001992462.1 3733195 D 395960 CDS YP_001992463.1 192291858 6411161 3734716..3735192 1 NC_011004.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 3735192 rpsF 6411161 rpsF Rhodopseudomonas palustris TIE-1 30S ribosomal protein S6 YP_001992463.1 3734716 D 395960 CDS YP_001992464.1 192291859 6411162 3735198..3735437 1 NC_011004.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 3735437 rpsR 6411162 rpsR Rhodopseudomonas palustris TIE-1 30S ribosomal protein S18 YP_001992464.1 3735198 D 395960 CDS YP_001992465.1 192291860 6411163 3735565..3736515 1 NC_011004.1 KEGG: nha:Nham_2414 hypothetical protein; hypothetical protein 3736515 6411163 Rpal_3489 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992465.1 3735565 D 395960 CDS YP_001992466.1 192291861 6411164 3736551..3737138 1 NC_011004.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3737138 rplI 6411164 rplI Rhodopseudomonas palustris TIE-1 50S ribosomal protein L9 YP_001992466.1 3736551 D 395960 CDS YP_001992467.1 192291862 6411165 complement(3737303..3738274) 1 NC_011004.1 KEGG: bja:blr4073 hypothetical protein; hypothetical protein 3738274 6411165 Rpal_3491 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992467.1 3737303 R 395960 CDS YP_001992468.1 192291863 6411166 3738533..3739783 1 NC_011004.1 PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: nha:Nham_2287 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 3739783 6411166 Rpal_3492 Rhodopseudomonas palustris TIE-1 cyclopropane-fatty-acyl-phospholipid synthase YP_001992468.1 3738533 D 395960 CDS YP_001992469.1 192291864 6411167 complement(3739805..3740002) 1 NC_011004.1 KEGG: nha:Nham_2288 hypothetical protein; hypothetical protein 3740002 6411167 Rpal_3493 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992469.1 3739805 R 395960 CDS YP_001992470.1 192291865 6411168 3740402..3741898 1 NC_011004.1 unwinds double stranded DNA; replicative DNA helicase 3741898 6411168 Rpal_3494 Rhodopseudomonas palustris TIE-1 replicative DNA helicase YP_001992470.1 3740402 D 395960 CDS YP_001992471.1 192291866 6411169 3741966..3743207 1 NC_011004.1 KEGG: nha:Nham_2290 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 3743207 6411169 Rpal_3495 Rhodopseudomonas palustris TIE-1 alanine racemase YP_001992471.1 3741966 D 395960 CDS YP_001992472.1 192291867 6411170 complement(3743334..3743591) 1 NC_011004.1 KEGG: bbt:BBta_5835 exported protein of unknown function; hypothetical protein 3743591 6411170 Rpal_3496 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992472.1 3743334 R 395960 CDS YP_001992473.1 192291868 6411171 complement(3743588..3745225) 1 NC_011004.1 KEGG: bbt:BBta_1317 membrane protein of unknown function; hypothetical protein 3745225 6411171 Rpal_3497 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992473.1 3743588 R 395960 CDS YP_001992474.1 192291869 6411172 complement(3745684..3746076) 1 NC_011004.1 KEGG: xau:Xaut_1872 hypothetical protein; hypothetical protein 3746076 6411172 Rpal_3498 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992474.1 3745684 R 395960 CDS YP_001992475.1 192291870 6411173 3746223..3747680 1 NC_011004.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 3747680 6411173 Rpal_3499 Rhodopseudomonas palustris TIE-1 DNA repair protein RadA YP_001992475.1 3746223 D 395960 CDS YP_001992476.1 192291871 6411174 3747894..3748529 1 NC_011004.1 PFAM: Colicin V production protein; KEGG: bja:bll4061 colicin V production protein; colicin V production protein 3748529 6411174 Rpal_3500 Rhodopseudomonas palustris TIE-1 colicin V production protein YP_001992476.1 3747894 D 395960 CDS YP_001992477.1 192291872 6411175 3748553..3750082 1 NC_011004.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 3750082 6411175 Rpal_3501 Rhodopseudomonas palustris TIE-1 amidophosphoribosyltransferase YP_001992477.1 3748553 D 395960 CDS YP_001992478.1 192291873 6411176 3750212..3750955 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nwi:Nwi_2019 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3750955 6411176 Rpal_3502 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001992478.1 3750212 D 395960 CDS YP_001992479.1 192291874 6411177 3751039..3752265 1 NC_011004.1 KEGG: bbt:BBta_3779 ABC transporter substrate-binding protein; ABC transporter substrate-binding protein 3752265 6411177 Rpal_3503 Rhodopseudomonas palustris TIE-1 ABC transporter substrate-binding protein YP_001992479.1 3751039 D 395960 CDS YP_001992480.1 192291875 6411178 complement(3752286..3753572) 1 NC_011004.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:blr4054 tetracycline resistance protein; major facilitator superfamily protein 3753572 6411178 Rpal_3504 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001992480.1 3752286 R 395960 CDS YP_001992481.1 192291876 6411179 complement(3753569..3754948) 1 NC_011004.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 3754948 engA 6411179 engA Rhodopseudomonas palustris TIE-1 GTP-binding protein EngA YP_001992481.1 3753569 R 395960 CDS YP_001992482.1 192291877 6411180 complement(3755022..3755573) 1 NC_011004.1 KEGG: bbt:BBta_3775 exported protein of unknown function; hypothetical protein 3755573 6411180 Rpal_3506 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992482.1 3755022 R 395960 CDS YP_001992483.1 192291878 6411181 complement(3755619..3756275) 1 NC_011004.1 KEGG: bja:blr4050 hypothetical protein; hypothetical protein 3756275 6411181 Rpal_3507 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992483.1 3755619 R 395960 CDS YP_001992484.1 192291879 6411182 complement(3756438..3757262) 1 NC_011004.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3757262 panB 6411182 panB Rhodopseudomonas palustris TIE-1 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_001992484.1 3756438 R 395960 CDS YP_001992485.1 192291880 6411183 complement(3757265..3757849) 1 NC_011004.1 PFAM: NnrUfamily protein; KEGG: bja:blr4047 hypothetical protein; NnrU family protein 3757849 6411183 Rpal_3509 Rhodopseudomonas palustris TIE-1 NnrU family protein YP_001992485.1 3757265 R 395960 CDS YP_001992486.1 192291881 6411184 3757993..3758991 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bpt:Bpet0511 secreted protein; hypothetical protein 3758991 6411184 Rpal_3510 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992486.1 3757993 D 395960 CDS YP_001992487.1 192291882 6411185 complement(3759040..3759486) 1 NC_011004.1 KEGG: dar:Daro_1769 hypothetical protein; hypothetical protein 3759486 6411185 Rpal_3511 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992487.1 3759040 R 395960 CDS YP_001992488.1 192291883 6411186 complement(3759629..3759895) 1 NC_011004.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: bra:BRADO4482 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 3759895 6411186 Rpal_3512 Rhodopseudomonas palustris TIE-1 Sel1 domain-containing protein repeat-containing protein YP_001992488.1 3759629 R 395960 CDS YP_001992489.1 192291884 6411187 complement(3760570..3760707) 1 NC_011004.1 KEGG: aba:Acid345_0548 hypothetical protein; hypothetical protein 3760707 6411187 Rpal_3513 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992489.1 3760570 R 395960 CDS YP_001992490.1 192291885 6411188 complement(3761231..3762793) 1 NC_011004.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: nwi:Nwi_1997 aspartyl/glutamyl-tRNA amidotransferase subunit B; glutamyl-tRNA(Gln) amidotransferase subunit B 3762793 6411188 Rpal_3514 Rhodopseudomonas palustris TIE-1 glutamyl-tRNA(Gln) amidotransferase subunit B YP_001992490.1 3761231 R 395960 CDS YP_001992491.1 192291886 6411189 complement(3762889..3764274) 1 NC_011004.1 PFAM: Patatin; KEGG: nha:Nham_2273 patatin; patatin 3764274 6411189 Rpal_3515 Rhodopseudomonas palustris TIE-1 patatin YP_001992491.1 3762889 R 395960 CDS YP_001992492.1 192291887 6411190 complement(3764416..3765522) 1 NC_011004.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: mlo:mlr9681 sensory transduction histidine kinase; signal transduction histidine kinase 3765522 6411190 Rpal_3516 Rhodopseudomonas palustris TIE-1 signal transduction histidine kinase YP_001992492.1 3764416 R 395960 CDS YP_001992493.1 192291888 6411191 complement(3765599..3767077) 1 NC_011004.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 3767077 gatA 6411191 gatA Rhodopseudomonas palustris TIE-1 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001992493.1 3765599 R 395960 CDS YP_001992494.1 192291889 6411193 3767490..3767774 1 NC_011004.1 KEGG: bte:BTH_II1355 pANL12; hypothetical protein 3767774 6411193 Rpal_3519 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992494.1 3767490 D 395960 CDS YP_001992495.1 192291890 6411194 complement(3767778..3767984) 1 NC_011004.1 KEGG: nha:Nham_2276 hypothetical protein; hypothetical protein 3767984 6411194 Rpal_3520 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992495.1 3767778 R 395960 CDS YP_001992496.1 192291891 6411195 complement(3767996..3768283) 1 NC_011004.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 3768283 gatC 6411195 gatC Rhodopseudomonas palustris TIE-1 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_001992496.1 3767996 R 395960 CDS YP_001992497.1 192291892 6411196 complement(3768370..3769446) 1 NC_011004.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: nha:Nham_2278 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 3769446 6411196 Rpal_3522 Rhodopseudomonas palustris TIE-1 2-nitropropane dioxygenase YP_001992497.1 3768370 R 395960 CDS YP_001992498.1 192291893 6411197 3769605..3770087 1 NC_011004.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3770087 6411197 Rpal_3523 Rhodopseudomonas palustris TIE-1 Holliday junction resolvase-like protein YP_001992498.1 3769605 D 395960 CDS YP_001992499.1 192291894 6411198 3770109..3770495 1 NC_011004.1 PFAM: SEC-C motif domain protein; KEGG: gur:Gura_0182 sec-C motif domain protein; SEC-C motif domain-containing protein 3770495 6411198 Rpal_3524 Rhodopseudomonas palustris TIE-1 SEC-C motif domain-containing protein YP_001992499.1 3770109 D 395960 CDS YP_001992500.1 192291895 6411199 complement(3770622..3772271) 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:bll5097 acyl CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3772271 6411199 Rpal_3525 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001992500.1 3770622 R 395960 CDS YP_001992501.1 192291896 6411200 complement(3772353..3773984) 1 NC_011004.1 TIGRFAM: indolepyruvate/phenylpyruvate decarboxylase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bbt:BBta_0512 indole-3-pyruvate decarboxylase; indolepyruvate/phenylpyruvate decarboxylase 3773984 6411200 Rpal_3526 Rhodopseudomonas palustris TIE-1 indolepyruvate/phenylpyruvate decarboxylase YP_001992501.1 3772353 R 395960 CDS YP_001992502.1 192291897 6411201 3774175..3775128 1 NC_011004.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 3775128 pyrB 6411201 pyrB Rhodopseudomonas palustris TIE-1 aspartate carbamoyltransferase catalytic subunit YP_001992502.1 3774175 D 395960 CDS YP_001992503.1 192291898 6411202 3775148..3776458 1 NC_011004.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 3776458 6411202 Rpal_3528 Rhodopseudomonas palustris TIE-1 dihydroorotase YP_001992503.1 3775148 D 395960 CDS YP_001992504.1 192291899 6411203 3776602..3777213 1 NC_011004.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 3777213 6411203 Rpal_3529 Rhodopseudomonas palustris TIE-1 glycerol-3-phosphate acyltransferase PlsY YP_001992504.1 3776602 D 395960 CDS YP_001992505.1 192291900 6411204 3777392..3778171 1 NC_011004.1 KEGG: xla:397773 ribonucleoprotein Pfam: RRM_1 GRP Collagen PROSITE: GLY_RICH RRM; hypothetical protein 3778171 6411204 Rpal_3530 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992505.1 3777392 D 395960 CDS YP_001992506.1 192291901 6411205 3778243..3779379 1 NC_011004.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: bja:blr5104 DNA processing protein; DNA protecting protein DprA 3779379 6411205 Rpal_3531 Rhodopseudomonas palustris TIE-1 DNA protecting protein DprA YP_001992506.1 3778243 D 395960 CDS YP_001992507.1 192291902 6411206 3779470..3780882 1 NC_011004.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: mag:amb1065 predicted membrane protein; membrane bound O-acyl transferase MBOAT family protein 3780882 6411206 Rpal_3532 Rhodopseudomonas palustris TIE-1 membrane bound O-acyl transferase MBOAT family protein YP_001992507.1 3779470 D 395960 CDS YP_001992508.1 192291903 6411207 3780887..3782077 1 NC_011004.1 KEGG: fps:FP1412 probable sugar O-acetyltransferase precursor; hypothetical protein 3782077 6411207 Rpal_3533 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992508.1 3780887 D 395960 CDS YP_001992509.1 192291904 6411208 complement(3782339..3782554) 1 NC_011004.1 KEGG: nwi:Nwi_1711 hypothetical protein; hypothetical protein 3782554 6411208 Rpal_3534 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992509.1 3782339 R 395960 CDS YP_001992510.1 192291905 6411209 3782801..3785536 1 NC_011004.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 3785536 6411209 Rpal_3535 Rhodopseudomonas palustris TIE-1 DNA topoisomerase I YP_001992510.1 3782801 D 395960 CDS YP_001992511.1 192291906 6411210 3785539..3787884 1 NC_011004.1 KEGG: nha:Nham_2438 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; ribonuclease R 3787884 6411210 Rpal_3536 Rhodopseudomonas palustris TIE-1 ribonuclease R YP_001992511.1 3785539 D 395960 CDS YP_001992512.1 192291907 6411211 3787884..3788312 1 NC_011004.1 PFAM: protein of unknown function DUF983; KEGG: bbt:BBta_4735 hypothetical protein; hypothetical protein 3788312 6411211 Rpal_3537 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992512.1 3787884 D 395960 CDS YP_001992513.1 192291908 6411212 3788382..3789137 1 NC_011004.1 PFAM: NUDIX hydrolase; KEGG: bbt:BBta_4736 NUDIX hydrolase; NUDIX hydrolase 3789137 6411212 Rpal_3538 Rhodopseudomonas palustris TIE-1 NUDIX hydrolase YP_001992513.1 3788382 D 395960 CDS YP_001992514.1 192291909 6411213 complement(3789172..3790419) 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A3477 major facilitator superfamily MFS_1; major facilitator superfamily protein 3790419 6411213 Rpal_3539 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001992514.1 3789172 R 395960 CDS YP_001992515.1 192291910 6411214 3790718..3790885 1 NC_011004.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3790885 rpmG 6411214 rpmG Rhodopseudomonas palustris TIE-1 50S ribosomal protein L33 YP_001992515.1 3790718 D 395960 CDS YP_001992516.1 192291911 6411215 complement(3791121..3792494) 1 NC_011004.1 involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; response regulator PleD 3792494 pleD 6411215 pleD Rhodopseudomonas palustris TIE-1 response regulator PleD YP_001992516.1 3791121 R 395960 CDS YP_001992517.1 192291912 6411216 complement(3792505..3792870) 1 NC_011004.1 PFAM: response regulator receiver; KEGG: bja:bll5124 two-component response regulator; response regulator receiver protein 3792870 6411216 Rpal_3542 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001992517.1 3792505 R 395960 CDS YP_001992518.1 192291913 6411217 3792996..3793295 1 NC_011004.1 KEGG: bra:BRADO4522 hypothetical protein; hypothetical protein 3793295 6411217 Rpal_3543 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992518.1 3792996 D 395960 CDS YP_001992519.1 192291914 6411218 3793292..3794587 1 NC_011004.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 3794587 6411218 Rpal_3544 Rhodopseudomonas palustris TIE-1 DNA polymerase IV YP_001992519.1 3793292 D 395960 CDS YP_001992520.1 192291915 6411219 complement(3794712..3795578) 1 NC_011004.1 PFAM: Domain of unknown function DUF1849; KEGG: nha:Nham_2446 hypothetical protein; hypothetical protein 3795578 6411219 Rpal_3545 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992520.1 3794712 R 395960 CDS YP_001992521.1 192291916 6411220 3795849..3796316 1 NC_011004.1 PFAM: Endoribonuclease L-PSP; KEGG: nwi:Nwi_1427 endoribonuclease L-PSP; endoribonuclease L-PSP 3796316 6411220 Rpal_3546 Rhodopseudomonas palustris TIE-1 endoribonuclease L-PSP YP_001992521.1 3795849 D 395960 CDS YP_001992522.1 192291917 6411221 3796336..3797082 1 NC_011004.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: bja:blr5133 hypothetical protein; glycerophosphoryl diester phosphodiesterase 3797082 6411221 Rpal_3547 Rhodopseudomonas palustris TIE-1 glycerophosphoryl diester phosphodiesterase YP_001992522.1 3796336 D 395960 CDS YP_001992523.1 192291918 6411222 3797175..3798404 1 NC_011004.1 PFAM: protein of unknown function DUF482; KEGG: bja:blr5134 hypothetical protein; hypothetical protein 3798404 6411222 Rpal_3548 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992523.1 3797175 D 395960 CDS YP_001992524.1 192291919 6411223 3798454..3798882 1 NC_011004.1 PFAM: histidine triad (HIT) protein; KEGG: bja:blr5135 hypothetical protein; histidine triad (HIT) protein 3798882 6411223 Rpal_3549 Rhodopseudomonas palustris TIE-1 histidine triad (HIT) protein YP_001992524.1 3798454 D 395960 CDS YP_001992525.1 192291920 6411224 complement(3798888..3799349) 1 NC_011004.1 PFAM: protein of unknown function UPF0066; KEGG: nha:Nham_2452 protein of unknown function UPF0066; hypothetical protein 3799349 6411224 Rpal_3550 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992525.1 3798888 R 395960 CDS YP_001992526.1 192291921 6411225 complement(3799398..3799742) 1 NC_011004.1 KEGG: bbt:BBta_4760 membrane protein of unknown function; hypothetical protein 3799742 6411225 Rpal_3551 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992526.1 3799398 R 395960 CDS YP_001992527.1 192291922 6411226 complement(3799739..3800482) 1 NC_011004.1 PFAM: AzlC family protein; KEGG: bja:bll5138 hypothetical protein; AzlC family protein 3800482 6411226 Rpal_3552 Rhodopseudomonas palustris TIE-1 AzlC family protein YP_001992527.1 3799739 R 395960 CDS YP_001992528.1 192291923 6411227 3800635..3800994 1 NC_011004.1 PFAM: type IV pilus assembly PilZ; KEGG: bbt:BBta_7466 hypothetical protein; type IV pilus assembly PilZ 3800994 6411227 Rpal_3553 Rhodopseudomonas palustris TIE-1 type IV pilus assembly PilZ YP_001992528.1 3800635 D 395960 CDS YP_001992529.1 192291924 6411228 complement(3801011..3802042) 1 NC_011004.1 PFAM: Sporulation domain protein; lytic transglycosylase; KEGG: bja:bll5139 probable transglycosylase; lytic transglycosylase 3802042 6411228 Rpal_3554 Rhodopseudomonas palustris TIE-1 lytic transglycosylase YP_001992529.1 3801011 R 395960 CDS YP_001992530.1 192291925 6411229 3802754..3804532 1 NC_011004.1 KEGG: aav:Aave_0600 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; hypothetical protein 3804532 6411229 Rpal_3555 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992530.1 3802754 D 395960 CDS YP_001992531.1 192291926 6411230 complement(3804607..3806991) 1 NC_011004.1 KEGG: bra:BRADO4545 ATP-dependent specificity subunit of ClpA-ClpP serine protease; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA; Clp domain protein; ATPase AAA; ATPase AAA-2 domain protein; SMART: ATPase AAA; ATP-dependent Clp protease ATP-binding protein ClpA 3806991 6411230 Rpal_3556 Rhodopseudomonas palustris TIE-1 ATP-dependent Clp protease ATP-binding protein ClpA YP_001992531.1 3804607 R 395960 CDS YP_001992532.1 192291927 6411231 complement(3807185..3807532) 1 NC_011004.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 3807532 clpS 6411231 clpS Rhodopseudomonas palustris TIE-1 ATP-dependent Clp protease adaptor protein ClpS YP_001992532.1 3807185 R 395960 CDS YP_001992533.1 192291928 6411232 3807987..3809354 1 NC_011004.1 KEGG: nha:Nham_2418 hypothetical protein; hypothetical protein 3809354 6411232 Rpal_3558 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992533.1 3807987 D 395960 CDS YP_001992534.1 192291929 6411233 3809710..3811467 1 NC_011004.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: bbt:BBta_4777 D-alanyl-D-alanine carboxypeptidase (peptidase S11)(dd-carboxypeptidase); serine-type D-Ala-D-Ala carboxypeptidase 3811467 6411233 Rpal_3559 Rhodopseudomonas palustris TIE-1 serine-type D-Ala-D-Ala carboxypeptidase YP_001992534.1 3809710 D 395960 CDS YP_001992535.1 192291930 6411234 complement(3811795..3812523) 1 NC_011004.1 PFAM: heat shock protein DnaJ domain protein; KEGG: bja:bll5157 hypothetical protein; heat shock protein DnaJ domain-containing protein 3812523 6411234 Rpal_3560 Rhodopseudomonas palustris TIE-1 heat shock protein DnaJ domain-containing protein YP_001992535.1 3811795 R 395960 CDS YP_001992536.1 192291931 6411235 complement(3812579..3813319) 1 NC_011004.1 KEGG: bja:bll5159 hypothetical protein; hypothetical protein 3813319 6411235 Rpal_3561 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992536.1 3812579 R 395960 CDS YP_001992537.1 192291932 6411236 complement(3813398..3814225) 1 NC_011004.1 KEGG: bra:BRADO4552 conserved hypothetical protein; alpha/beta-hydrolases; hypothetical protein 3814225 6411236 Rpal_3562 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992537.1 3813398 R 395960 CDS YP_001992538.1 192291933 6411237 complement(3814500..3815423) 1 NC_011004.1 PFAM: ATPase MipZ; KEGG: bja:bll5161 hypothetical protein; ATPase MipZ 3815423 6411237 Rpal_3563 Rhodopseudomonas palustris TIE-1 ATPase MipZ YP_001992538.1 3814500 R 395960 CDS YP_001992539.1 192291934 6411238 3815691..3816542 1 NC_011004.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3816542 panC 6411238 panC Rhodopseudomonas palustris TIE-1 pantoate--beta-alanine ligase YP_001992539.1 3815691 D 395960 CDS YP_001992540.1 192291935 6411239 complement(3816579..3816998) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bja:bll5163 hypothetical protein; hypothetical protein 3816998 6411239 Rpal_3565 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992540.1 3816579 R 395960 CDS YP_001992541.1 192291936 6411240 complement(3817037..3818077) 1 NC_011004.1 KEGG: nha:Nham_2426 hypothetical protein; hypothetical protein 3818077 6411240 Rpal_3566 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992541.1 3817037 R 395960 CDS YP_001992542.1 192291937 6411241 complement(3818257..3818448) 1 NC_011004.1 KEGG: nha:Nham_2427 hypothetical protein; hypothetical protein 3818448 6411241 Rpal_3567 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992542.1 3818257 R 395960 CDS YP_001992543.1 192291938 6411242 complement(3818661..3819317) 1 NC_011004.1 PFAM: glutathione S-transferase domain; KEGG: nha:Nham_2428 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 3819317 6411242 Rpal_3568 Rhodopseudomonas palustris TIE-1 glutathione S-transferase domain-containing protein YP_001992543.1 3818661 R 395960 CDS YP_001992544.1 192291939 6411243 3819435..3819719 1 NC_011004.1 KEGG: nha:Nham_2430 hypothetical protein; hypothetical protein 3819719 6411243 Rpal_3569 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992544.1 3819435 D 395960 CDS YP_001992545.1 192291940 6411244 complement(3819726..3820520) 1 NC_011004.1 PFAM: protein of unknown function DUF218; KEGG: nwi:Nwi_1708 protein of unknown function DUF218; hypothetical protein 3820520 6411244 Rpal_3570 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992545.1 3819726 R 395960 CDS YP_001992546.1 192291941 6411245 complement(3820595..3821428) 1 NC_011004.1 PFAM: aldo/keto reductase; KEGG: bra:BRADO4561 aldo/keto reductase; 2,5-diketo-D-gluconate reductase B (DkgB-like); aldo/keto reductase 3821428 6411245 Rpal_3571 Rhodopseudomonas palustris TIE-1 aldo/keto reductase YP_001992546.1 3820595 R 395960 CDS YP_001992547.1 192291942 6411246 complement(3821483..3821848) 1 NC_011004.1 PFAM: helix-turn-helix domain protein; KEGG: bbt:BBta_4790 transcriptional regulator, XRE family; XRE family transcriptional regulator 3821848 6411246 Rpal_3572 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001992547.1 3821483 R 395960 CDS YP_001992548.1 192291943 6411247 complement(3821893..3823314) 1 NC_011004.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: bra:BRADO4563 magnesium transporter MgtE-like (divalent cation transporter Mg2+/Ni2+/Co2+); magnesium transporter 3823314 6411247 Rpal_3573 Rhodopseudomonas palustris TIE-1 magnesium transporter YP_001992548.1 3821893 R 395960 CDS YP_001992549.1 192291944 6411248 3823477..3824280 1 NC_011004.1 PFAM: polysaccharide deacetylase; KEGG: nha:Nham_2434 polysaccharide deacetylase; polysaccharide deacetylase 3824280 6411248 Rpal_3574 Rhodopseudomonas palustris TIE-1 polysaccharide deacetylase YP_001992549.1 3823477 D 395960 CDS YP_001992550.1 192291945 6411249 3824418..3825737 1 NC_011004.1 PFAM: polysaccharide deacetylase; KEGG: nha:Nham_2435 polysaccharide deacetylase; polysaccharide deacetylase 3825737 6411249 Rpal_3575 Rhodopseudomonas palustris TIE-1 polysaccharide deacetylase YP_001992550.1 3824418 D 395960 CDS YP_001992551.1 192291946 6411250 3825823..3826254 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: nha:Nham_3790 hypothetical protein; hypothetical protein 3826254 6411250 Rpal_3576 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992551.1 3825823 D 395960 CDS YP_001992552.1 192291947 6411251 3826254..3826715 1 NC_011004.1 PFAM: RES domain protein; KEGG: xau:Xaut_5010 RES domain protein; RES domain-containing protein 3826715 6411251 Rpal_3577 Rhodopseudomonas palustris TIE-1 RES domain-containing protein YP_001992552.1 3826254 D 395960 CDS YP_001992553.1 192291948 6411253 complement(3826988..3827230) 1 NC_011004.1 PFAM: surface presentation of antigens (SPOA) protein; KEGG: bja:bsl5256 hypothetical protein; hypothetical protein 3827230 6411253 Rpal_3578 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992553.1 3826988 R 395960 CDS YP_001992554.1 192291949 6411254 3827297..3828034 1 NC_011004.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 3828034 lipB 6411254 lipB Rhodopseudomonas palustris TIE-1 lipoate-protein ligase B YP_001992554.1 3827297 D 395960 CDS YP_001992555.1 192291950 6411255 3828305..3830926 1 NC_011004.1 KEGG: bja:bll6545 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; GAF domain protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 3830926 6411255 Rpal_3580 Rhodopseudomonas palustris TIE-1 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001992555.1 3828305 D 395960 CDS YP_001992556.1 192291951 6411256 complement(3830951..3831382) 1 NC_011004.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: bja:bll5259 hypothetical protein; 4-oxalocrotonate tautomerase 3831382 6411256 Rpal_3581 Rhodopseudomonas palustris TIE-1 4-oxalocrotonate tautomerase YP_001992556.1 3830951 R 395960 CDS YP_001992557.1 192291952 6411257 3831488..3832336 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_4894 transcriptional regulator, LysR family; LysR family transcriptional regulator 3832336 6411257 Rpal_3582 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001992557.1 3831488 D 395960 CDS YP_001992558.1 192291953 6411258 complement(3832355..3832654) 1 NC_011004.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 3832654 6411258 Rpal_3583 Rhodopseudomonas palustris TIE-1 acylphosphatase YP_001992558.1 3832355 R 395960 CDS YP_001992559.1 192291954 6411259 complement(3832654..3833520) 1 NC_011004.1 KEGG: bja:bll5266 carboxy-phosphonoenolpyruvate mutase; carboxy-phosphonoenolpyruvate mutase 3833520 6411259 Rpal_3584 Rhodopseudomonas palustris TIE-1 carboxy-phosphonoenolpyruvate mutase YP_001992559.1 3832654 R 395960 CDS YP_001992560.1 192291955 6411260 complement(3833527..3835542) 1 NC_011004.1 PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: bja:bll5267 propionyl-coenzyme A carboxylase alpha polypeptide; carbamoyl-phosphate synthase L chain ATP-binding 3835542 6411260 Rpal_3585 Rhodopseudomonas palustris TIE-1 carbamoyl-phosphate synthase L chain ATP-binding YP_001992560.1 3833527 R 395960 CDS YP_001992561.1 192291956 6411261 3835696..3837546 1 NC_011004.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: bja:blr5306 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase 3837546 6411261 Rpal_3586 Rhodopseudomonas palustris TIE-1 type I phosphodiesterase/nucleotide pyrophosphatase YP_001992561.1 3835696 D 395960 CDS YP_001992562.1 192291957 6411262 complement(3837583..3838158) 1 NC_011004.1 KEGG: nwi:Nwi_1737 hypothetical protein; hypothetical protein 3838158 6411262 Rpal_3587 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992562.1 3837583 R 395960 CDS YP_001992563.1 192291958 6411263 complement(3838452..3838850) 1 NC_011004.1 KEGG: bra:BRADO3234 hypothetical protein; hypothetical protein 3838850 6411263 Rpal_3588 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992563.1 3838452 R 395960 CDS YP_001992564.1 192291959 6411264 3838969..3840420 1 NC_011004.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: bbt:BBta_4932 DNA photolyase class-1 family protein; deoxyribodipyrimidine photo-lyase 3840420 6411264 Rpal_3589 Rhodopseudomonas palustris TIE-1 deoxyribodipyrimidine photo-lyase YP_001992564.1 3838969 D 395960 CDS YP_001992565.1 192291960 6411265 3840499..3840840 1 NC_011004.1 KEGG: bja:blr5311 probable histon H1; histone H1 3840840 6411265 Rpal_3590 Rhodopseudomonas palustris TIE-1 histone H1 YP_001992565.1 3840499 D 395960 CDS YP_001992566.1 192291961 6411266 complement(3840947..3841822) 1 NC_011004.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:bll5313 hypothetical protein; hypothetical protein 3841822 6411266 Rpal_3591 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992566.1 3840947 R 395960 CDS YP_001992567.1 192291962 6411267 3841976..3842884 1 NC_011004.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: ret:RHE_CH03501 phenazine biosynthesis protein; phenazine biosynthesis protein PhzF family 3842884 6411267 Rpal_3592 Rhodopseudomonas palustris TIE-1 phenazine biosynthesis protein PhzF family YP_001992567.1 3841976 D 395960 CDS YP_001992568.1 192291963 6411268 complement(3842939..3843385) 1 NC_011004.1 KEGG: bja:bll5314 hypothetical protein; hypothetical protein 3843385 6411268 Rpal_3593 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992568.1 3842939 R 395960 CDS YP_001992569.1 192291964 6411270 complement(3844529..3845320) 1 NC_011004.1 KEGG: cyb:CYB_2178 hypothetical protein; hypothetical protein 3845320 6411270 Rpal_3594 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992569.1 3844529 R 395960 CDS YP_001992570.1 192291965 6411271 complement(3845324..3845785) 1 NC_011004.1 KEGG: nis:NIS_1397 ABC transporter ATP-binding protein; hypothetical protein 3845785 6411271 Rpal_3595 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992570.1 3845324 R 395960 CDS YP_001992571.1 192291966 6411272 complement(3848049..3848309) 1 NC_011004.1 hypothetical protein 3848309 6411272 Rpal_3596 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992571.1 3848049 R 395960 CDS YP_001992572.1 192291967 6411273 complement(3848522..3848758) 1 NC_011004.1 hypothetical protein 3848758 6411273 Rpal_3597 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992572.1 3848522 R 395960 CDS YP_001992573.1 192291968 6411274 3849672..3851690 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bra:BRADO6631 methyl-accepting chemotaxis receptor/sensory transducer precursor; methyl-accepting chemotaxis sensory transducer 3851690 6411274 Rpal_3598 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001992573.1 3849672 D 395960 CDS YP_001992574.1 192291969 6411275 3851855..3852205 1 NC_011004.1 KEGG: nha:Nham_2176 hypothetical protein; hypothetical protein 3852205 6411275 Rpal_3599 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992574.1 3851855 D 395960 CDS YP_001992575.1 192291970 6411276 complement(3852237..3854939) 1 NC_011004.1 KEGG: bja:bll5328 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 3854939 6411276 Rpal_3600 Rhodopseudomonas palustris TIE-1 multi-sensor signal transduction histidine kinase YP_001992575.1 3852237 R 395960 CDS YP_001992576.1 192291971 6411277 complement(3855126..3857300) 1 NC_011004.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: bbt:BBta_5502 alcohol dehydrogenase; PQQ-dependent dehydrogenase 3857300 6411277 Rpal_3601 Rhodopseudomonas palustris TIE-1 PQQ-dependent dehydrogenase YP_001992576.1 3855126 R 395960 CDS YP_001992577.1 192291972 6411278 complement(3857454..3858245) 1 NC_011004.1 PFAM: NUDIX hydrolase; KEGG: bbt:BBta_5001 hypothetical protein; NUDIX hydrolase 3858245 6411278 Rpal_3602 Rhodopseudomonas palustris TIE-1 NUDIX hydrolase YP_001992577.1 3857454 R 395960 CDS YP_001992578.1 192291973 6411279 complement(3858250..3859203) 1 NC_011004.1 PFAM: dihydrodipicolinate synthetase; KEGG: bja:bll5331 hypothetical protein; dihydrodipicolinate synthetase 3859203 6411279 Rpal_3603 Rhodopseudomonas palustris TIE-1 dihydrodipicolinate synthetase YP_001992578.1 3858250 R 395960 CDS YP_001992579.1 192291974 6411280 complement(3859306..3860184) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll5332 probable short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3860184 6411280 Rpal_3604 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001992579.1 3859306 R 395960 CDS YP_001992580.1 192291975 6411281 complement(3860330..3861190) 1 NC_011004.1 PFAM: MaoC domain protein dehydratase; KEGG: bja:bll5333 dehydrogenase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase 3861190 6411281 Rpal_3605 Rhodopseudomonas palustris TIE-1 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase YP_001992580.1 3860330 R 395960 CDS YP_001992581.1 192291976 6411282 complement(3861377..3861769) 1 NC_011004.1 PFAM: protein of unknown function DUF35; KEGG: bra:BRADO4313 hypothetical protein; hypothetical protein 3861769 6411282 Rpal_3606 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992581.1 3861377 R 395960 CDS YP_001992582.1 192291977 6411283 complement(3861769..3862917) 1 NC_011004.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 3862917 6411283 Rpal_3607 Rhodopseudomonas palustris TIE-1 acetyl-CoA acetyltransferase YP_001992582.1 3861769 R 395960 CDS YP_001992583.1 192291978 6411284 complement(3863206..3866691) 1 NC_011004.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 3866691 6411284 Rpal_3608 Rhodopseudomonas palustris TIE-1 indolepyruvate ferredoxin oxidoreductase YP_001992583.1 3863206 R 395960 CDS YP_001992584.1 192291979 6411285 3867022..3867423 1 NC_011004.1 KEGG: bja:blr5341 hypothetical protein; hypothetical protein 3867423 6411285 Rpal_3609 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992584.1 3867022 D 395960 CDS YP_001992585.1 192291980 6411286 3867668..3867955 1 NC_011004.1 KEGG: bja:bsr5347 hypothetical protein; hypothetical protein 3867955 6411286 Rpal_3610 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992585.1 3867668 D 395960 CDS YP_001992586.1 192291981 6411287 complement(3868021..3868830) 1 NC_011004.1 PFAM: protein of unknown function DUF1295; KEGG: olu:OSTLU_16639 predicted protein; hypothetical protein 3868830 6411287 Rpal_3611 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992586.1 3868021 R 395960 CDS YP_001992587.1 192291982 6411288 complement(3868936..3869484) 1 NC_011004.1 KEGG: mag:amb3985 hypothetical protein; hypothetical protein 3869484 6411288 Rpal_3612 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992587.1 3868936 R 395960 CDS YP_001992588.1 192291983 6411289 complement(3869573..3871306) 1 NC_011004.1 PFAM: Protein phosphatase 2C-like; Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: bja:bll2800 probable bifunctional serine/threonine kinase and phosphatase; serine/threonine protein kinase 3871306 6411289 Rpal_3613 Rhodopseudomonas palustris TIE-1 serine/threonine protein kinase YP_001992588.1 3869573 R 395960 CDS YP_001992589.1 192291984 6411290 complement(3871374..3872213) 1 NC_011004.1 PFAM: formate/nitrite transporter; KEGG: bja:bll2801 probable potential formate transporter; formate/nitrite transporter 3872213 6411290 Rpal_3614 Rhodopseudomonas palustris TIE-1 formate/nitrite transporter YP_001992589.1 3871374 R 395960 CDS YP_001992590.1 192291985 6411291 3872606..3872890 1 NC_011004.1 PFAM: plasmid maintenance system killer; KEGG: azc:AZC_0872 plasmid maintenance system killer protein; plasmid maintenance system killer protein 3872890 6411291 Rpal_3615 Rhodopseudomonas palustris TIE-1 plasmid maintenance system killer protein YP_001992590.1 3872606 D 395960 CDS YP_001992591.1 192291986 6411292 3872903..3873205 1 NC_011004.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: azc:AZC_4647 plasmid maintenance system antidote protein; XRE family transcriptional regulator 3873205 6411292 Rpal_3616 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001992591.1 3872903 D 395960 CDS YP_001992592.1 192291987 6411293 complement(3873388..3874245) 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: mex:Mext_2384 hypothetical protein; NAD-dependent epimerase/dehydratase 3874245 6411293 Rpal_3617 Rhodopseudomonas palustris TIE-1 NAD-dependent epimerase/dehydratase YP_001992592.1 3873388 R 395960 CDS YP_001992593.1 192291988 6411294 complement(3874444..3875976) 1 NC_011004.1 PFAM: carboxyl transferase; KEGG: bra:BRADO4331 propionyl-CoA carboxylase beta chain; carboxyl transferase 3875976 6411294 Rpal_3618 Rhodopseudomonas palustris TIE-1 carboxyl transferase YP_001992593.1 3874444 R 395960 CDS YP_001992594.1 192291989 6411295 3876256..3876672 1 NC_011004.1 KEGG: bbt:BBta_5025 hypothetical protein; hypothetical protein 3876672 6411295 Rpal_3619 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992594.1 3876256 D 395960 CDS YP_001992595.1 192291990 6411296 complement(3876674..3876949) 1 NC_011004.1 KEGG: nha:Nham_1578 type III secretion protein; type III secretion protein 3876949 6411296 Rpal_3620 Rhodopseudomonas palustris TIE-1 type III secretion protein YP_001992595.1 3876674 R 395960 CDS YP_001992596.1 192291991 6411297 complement(3876946..3878748) 1 NC_011004.1 KEGG: bbt:BBta_5030 exported protein of unknown function; hypothetical protein 3878748 6411297 Rpal_3621 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992596.1 3876946 R 395960 CDS YP_001992597.1 192291992 6411298 complement(3878818..3879603) 1 NC_011004.1 PFAM: ATP12 ATPase; KEGG: bja:bll5364 hypothetical protein; ATP12 ATPase 3879603 6411298 Rpal_3622 Rhodopseudomonas palustris TIE-1 ATP12 ATPase YP_001992597.1 3878818 R 395960 CDS YP_001992598.1 192291993 6411299 complement(3879618..3879947) 1 NC_011004.1 KEGG: rrs:RoseRS_2769 FHA domain containing protein; hypothetical protein 3879947 6411299 Rpal_3623 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992598.1 3879618 R 395960 CDS YP_001992599.1 192291994 6411300 complement(3880015..3881382) 1 NC_011004.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bra:BRADO4632 ribosomal large subunit pseudouridine synthase RluC-like (23S RNA pseudouridylate synthase) (RNA-uridine isomerase); RluA family pseudouridine synthase 3881382 6411300 Rpal_3624 Rhodopseudomonas palustris TIE-1 RluA family pseudouridine synthase YP_001992599.1 3880015 R 395960 CDS YP_001992600.1 192291995 6411301 complement(3881614..3882195) 1 NC_011004.1 KEGG: azc:AZC_4195 hypothetical protein; hypothetical protein 3882195 6411301 Rpal_3625 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992600.1 3881614 R 395960 CDS YP_001992601.1 192291996 6411302 complement(3882685..3883590) 1 NC_011004.1 PFAM: dienelactone hydrolase; KEGG: mag:amb1216 carboxymethylenebutenolidase; dienelactone hydrolase 3883590 6411302 Rpal_3626 Rhodopseudomonas palustris TIE-1 dienelactone hydrolase YP_001992601.1 3882685 R 395960 CDS YP_001992602.1 192291997 6411303 3883772..3887179 1 NC_011004.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:bll8142 hypothetical protein; hypothetical protein 3887179 6411303 Rpal_3627 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992602.1 3883772 D 395960 CDS YP_001992603.1 192291998 6411304 3887207..3887653 1 NC_011004.1 hypothetical protein 3887653 6411304 Rpal_3628 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992603.1 3887207 D 395960 CDS YP_001992604.1 192291999 6411305 3887663..3887869 1 NC_011004.1 hypothetical protein 3887869 6411305 Rpal_3629 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992604.1 3887663 D 395960 CDS YP_001992605.1 192292000 6411306 3887869..3888636 1 NC_011004.1 hypothetical protein 3888636 6411306 Rpal_3630 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992605.1 3887869 D 395960 CDS YP_001992606.1 192292001 6411307 3888774..3889451 1 NC_011004.1 PFAM: nitroreductase; KEGG: bbt:BBta_0024 hypothetical protein; nitroreductase 3889451 6411307 Rpal_3631 Rhodopseudomonas palustris TIE-1 nitroreductase YP_001992606.1 3888774 D 395960 CDS YP_001992607.1 192292002 6411308 3889656..3891716 1 NC_011004.1 KEGG: mrd:Mrad2831_4432 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 3891716 6411308 Rpal_3632 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor hybrid histidine kinase YP_001992607.1 3889656 D 395960 CDS YP_001992608.1 192292003 6411309 complement(3891845..3893053) 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: bja:blr2988 hypothetical protein; extracellular ligand-binding receptor 3893053 6411309 Rpal_3633 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001992608.1 3891845 R 395960 CDS YP_001992609.1 192292004 6411310 complement(3893159..3893578) 1 NC_011004.1 PFAM: protein of unknown function UPF0047; KEGG: bra:BRADO6457 hypothetical protein; hypothetical protein 3893578 6411310 Rpal_3634 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992609.1 3893159 R 395960 CDS YP_001992610.1 192292005 6411311 complement(3893648..3895618) 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bbt:BBta_1127 signaling membrane protein containing multidomains GGDEF/EAL; diguanylate cyclase/phosphodiesterase 3895618 6411311 Rpal_3635 Rhodopseudomonas palustris TIE-1 diguanylate cyclase/phosphodiesterase YP_001992610.1 3893648 R 395960 CDS YP_001992611.1 192292006 6411312 complement(3895919..3897250) 1 NC_011004.1 PFAM: ATPase AAA; ATPase AAA; SMART: ATPase AAA; KEGG: bja:bll5367 recombination factor protein RarA; recombination factor protein RarA 3897250 6411312 Rpal_3636 Rhodopseudomonas palustris TIE-1 recombination factor protein RarA YP_001992611.1 3895919 R 395960 CDS YP_001992612.1 192292007 6411313 complement(3897476..3898867) 1 NC_011004.1 KEGG: nha:Nham_1572 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 3898867 6411313 Rpal_3637 Rhodopseudomonas palustris TIE-1 protease Do YP_001992612.1 3897476 R 395960 CDS YP_001992613.1 192292008 6411314 complement(3898950..3899339) 1 NC_011004.1 PFAM: helix-turn-helix HxlR type; KEGG: bja:bll5370 transcriptional regulatory protein; HxlR family transcriptional regulator 3899339 6411314 Rpal_3638 Rhodopseudomonas palustris TIE-1 HxlR family transcriptional regulator YP_001992613.1 3898950 R 395960 CDS YP_001992614.1 192292009 6411315 3899457..3900473 1 NC_011004.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr5371 zinc-binding dehydrogenase; zinc-binding alcohol dehydrogenase 3900473 6411315 Rpal_3639 Rhodopseudomonas palustris TIE-1 zinc-binding alcohol dehydrogenase YP_001992614.1 3899457 D 395960 CDS YP_001992615.1 192292010 6411316 complement(3900696..3901490) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll5373 probable short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3901490 6411316 Rpal_3640 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001992615.1 3900696 R 395960 CDS YP_001992616.1 192292011 6411317 complement(3901775..3902194) 1 NC_011004.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 3902194 rplQ 6411317 rplQ Rhodopseudomonas palustris TIE-1 50S ribosomal protein L17 YP_001992616.1 3901775 R 395960 CDS YP_001992617.1 192292012 6411318 complement(3902350..3903369) 1 NC_011004.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 3903369 6411318 Rpal_3642 Rhodopseudomonas palustris TIE-1 DNA-directed RNA polymerase subunit alpha YP_001992617.1 3902350 R 395960 CDS YP_001992618.1 192292013 6411319 complement(3903503..3903892) 1 NC_011004.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 3903892 6411319 Rpal_3643 Rhodopseudomonas palustris TIE-1 30S ribosomal protein S11 YP_001992618.1 3903503 R 395960 CDS YP_001992619.1 192292014 6411320 complement(3904023..3904391) 1 NC_011004.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 3904391 rpsM 6411320 rpsM Rhodopseudomonas palustris TIE-1 30S ribosomal protein S13 YP_001992619.1 3904023 R 395960 CDS YP_001992620.1 192292015 6411321 complement(3904406..3904501) 1 NC_011004.1 hypothetical protein 3904501 6411321 Rpal_3645 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992620.1 3904406 R 395960 CDS YP_001992621.1 192292016 6411322 complement(3904576..3905679) 1 NC_011004.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 3905679 6411322 Rpal_3646 Rhodopseudomonas palustris TIE-1 adenylate kinase YP_001992621.1 3904576 R 395960 CDS YP_001992622.1 192292017 6411323 complement(3905676..3907007) 1 NC_011004.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 3907007 secY 6411323 secY Rhodopseudomonas palustris TIE-1 preprotein translocase subunit SecY YP_001992622.1 3905676 R 395960 CDS YP_001992623.1 192292018 6411324 complement(3907160..3907645) 1 NC_011004.1 late assembly protein; 50S ribosomal protein L15 3907645 rplO 6411324 rplO Rhodopseudomonas palustris TIE-1 50S ribosomal protein L15 YP_001992623.1 3907160 R 395960 CDS YP_001992624.1 192292019 6411325 complement(3907658..3907852) 1 NC_011004.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 3907852 rpmD 6411325 rpmD Rhodopseudomonas palustris TIE-1 50S ribosomal protein L30 YP_001992624.1 3907658 R 395960 CDS YP_001992625.1 192292020 6411326 complement(3907911..3908486) 1 NC_011004.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 3908486 rpsE 6411326 rpsE Rhodopseudomonas palustris TIE-1 30S ribosomal protein S5 YP_001992625.1 3907911 R 395960 CDS YP_001992626.1 192292021 6411327 complement(3908547..3908909) 1 NC_011004.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 3908909 rplR 6411327 rplR Rhodopseudomonas palustris TIE-1 50S ribosomal protein L18 YP_001992626.1 3908547 R 395960 CDS YP_001992627.1 192292022 6411328 complement(3908921..3909454) 1 NC_011004.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 3909454 rplF 6411328 rplF Rhodopseudomonas palustris TIE-1 50S ribosomal protein L6 YP_001992627.1 3908921 R 395960 CDS YP_001992628.1 192292023 6411329 complement(3909567..3909965) 1 NC_011004.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 3909965 rpsH 6411329 rpsH Rhodopseudomonas palustris TIE-1 30S ribosomal protein S8 YP_001992628.1 3909567 R 395960 CDS YP_001992629.1 192292024 6411330 complement(3909981..3910286) 1 NC_011004.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 3910286 rpsN 6411330 rpsN Rhodopseudomonas palustris TIE-1 30S ribosomal protein S14 YP_001992629.1 3909981 R 395960 CDS YP_001992630.1 192292025 6411331 complement(3910330..3910887) 1 NC_011004.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 3910887 rplE 6411331 rplE Rhodopseudomonas palustris TIE-1 50S ribosomal protein L5 YP_001992630.1 3910330 R 395960 CDS YP_001992631.1 192292026 6411332 complement(3910880..3911194) 1 NC_011004.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 3911194 rplX 6411332 rplX Rhodopseudomonas palustris TIE-1 50S ribosomal protein L24 YP_001992631.1 3910880 R 395960 CDS YP_001992632.1 192292027 6411333 complement(3911194..3911562) 1 NC_011004.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 3911562 rplN 6411333 rplN Rhodopseudomonas palustris TIE-1 50S ribosomal protein L14 YP_001992632.1 3911194 R 395960 CDS YP_001992633.1 192292028 6411334 complement(3911626..3911874) 1 NC_011004.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 3911874 rpsQ 6411334 rpsQ Rhodopseudomonas palustris TIE-1 30S ribosomal protein S17 YP_001992633.1 3911626 R 395960 CDS YP_001992634.1 192292029 6411335 complement(3911887..3912096) 1 NC_011004.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 3912096 6411335 Rpal_3659 Rhodopseudomonas palustris TIE-1 50S ribosomal protein L29 YP_001992634.1 3911887 R 395960 CDS YP_001992635.1 192292030 6411336 complement(3912102..3912515) 1 NC_011004.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 3912515 rplP 6411336 rplP Rhodopseudomonas palustris TIE-1 50S ribosomal protein L16 YP_001992635.1 3912102 R 395960 CDS YP_001992636.1 192292031 6411337 complement(3912548..3913255) 1 NC_011004.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 3913255 rpsC 6411337 rpsC Rhodopseudomonas palustris TIE-1 30S ribosomal protein S3 YP_001992636.1 3912548 R 395960 CDS YP_001992637.1 192292032 6411338 complement(3913278..3913661) 1 NC_011004.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 3913661 rplV 6411338 rplV Rhodopseudomonas palustris TIE-1 50S ribosomal protein L22 YP_001992637.1 3913278 R 395960 CDS YP_001992638.1 192292033 6411339 complement(3913672..3913950) 1 NC_011004.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 3913950 rpsS 6411339 rpsS Rhodopseudomonas palustris TIE-1 30S ribosomal protein S19 YP_001992638.1 3913672 R 395960 CDS YP_001992639.1 192292034 6411340 complement(3913962..3914798) 1 NC_011004.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 3914798 rplB 6411340 rplB Rhodopseudomonas palustris TIE-1 50S ribosomal protein L2 YP_001992639.1 3913962 R 395960 CDS YP_001992640.1 192292035 6411341 complement(3914812..3915111) 1 NC_011004.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 3915111 rplW 6411341 rplW Rhodopseudomonas palustris TIE-1 50S ribosomal protein L23 YP_001992640.1 3914812 R 395960 CDS YP_001992641.1 192292036 6411342 complement(3915108..3915728) 1 NC_011004.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 3915728 rplD 6411342 rplD Rhodopseudomonas palustris TIE-1 50S ribosomal protein L4 YP_001992641.1 3915108 R 395960 CDS YP_001992642.1 192292037 6411343 complement(3915730..3916455) 1 NC_011004.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 3916455 rplC 6411343 rplC Rhodopseudomonas palustris TIE-1 50S ribosomal protein L3 YP_001992642.1 3915730 R 395960 CDS YP_001992643.1 192292038 6411344 complement(3916506..3916814) 1 NC_011004.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 3916814 rpsJ 6411344 rpsJ Rhodopseudomonas palustris TIE-1 30S ribosomal protein S10 YP_001992643.1 3916506 R 395960 CDS YP_001992644.1 192292039 6411345 complement(3916902..3918092) 1 NC_011004.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 3918092 6411345 Rpal_3669 Rhodopseudomonas palustris TIE-1 elongation factor Tu YP_001992644.1 3916902 R 395960 CDS YP_001992645.1 192292040 6411346 complement(3918131..3920203) 1 NC_011004.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3920203 6411346 Rpal_3670 Rhodopseudomonas palustris TIE-1 elongation factor G YP_001992645.1 3918131 R 395960 CDS YP_001992646.1 192292041 6411347 complement(3920234..3920704) 1 NC_011004.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 3920704 6411347 Rpal_3671 Rhodopseudomonas palustris TIE-1 30S ribosomal protein S7 YP_001992646.1 3920234 R 395960 CDS YP_001992647.1 192292042 6411348 complement(3920720..3921091) 1 NC_011004.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 3921091 rpsL 6411348 rpsL Rhodopseudomonas palustris TIE-1 30S ribosomal protein S12 YP_001992647.1 3920720 R 395960 CDS YP_001992648.1 192292043 6411349 3921956..3922939 1 NC_011004.1 KEGG: bja:blr2658 hypothetical protein; hypothetical protein 3922939 6411349 Rpal_3673 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992648.1 3921956 D 395960 CDS YP_001992649.1 192292044 6411350 complement(3923038..3923859) 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: scl:sce7710 transcriptional regulator, AraC family; AraC family transcriptional regulator 3923859 6411350 Rpal_3674 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001992649.1 3923038 R 395960 CDS YP_001992650.1 192292045 6411351 3923995..3924690 1 NC_011004.1 PFAM: O-methyltransferase family 3; KEGG: scl:sce1113 hypothetical protein; O-methyltransferase family protein 3924690 6411351 Rpal_3675 Rhodopseudomonas palustris TIE-1 O-methyltransferase family protein YP_001992650.1 3923995 D 395960 CDS YP_001992651.1 192292046 6411352 3925303..3926505 1 NC_011004.1 PFAM: HNH endonuclease; KEGG: rfr:Rfer_1191 HNH endonuclease; HNH endonuclease 3926505 6411352 Rpal_3676 Rhodopseudomonas palustris TIE-1 HNH endonuclease YP_001992651.1 3925303 D 395960 CDS YP_001992652.1 192292047 6411353 complement(3926656..3927534) 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_0486 LysR substrate-binding; LysR family transcriptional regulator 3927534 6411353 Rpal_3677 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001992652.1 3926656 R 395960 CDS YP_001992653.1 192292048 6411354 3927634..3928851 1 NC_011004.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: mex:Mext_0485 protein of unknown function DUF1228; hypothetical protein 3928851 6411354 Rpal_3678 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992653.1 3927634 D 395960 CDS YP_001992654.1 192292049 6411355 complement(3928846..3930975) 1 NC_011004.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: oan:Oant_3208 heavy metal translocating P-type ATPase; ATPase P 3930975 6411355 Rpal_3679 Rhodopseudomonas palustris TIE-1 ATPase P YP_001992654.1 3928846 R 395960 CDS YP_001992655.1 192292050 6411356 3931041..3931442 1 NC_011004.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: nha:Nham_3726 transcriptional regulator, MerR family; MerR family transcriptional regulator 3931442 6411356 Rpal_3680 Rhodopseudomonas palustris TIE-1 MerR family transcriptional regulator YP_001992655.1 3931041 D 395960 CDS YP_001992656.1 192292051 6411357 complement(3931485..3932693) 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: smd:Smed_3859 major facilitator superfamily MFS_1; major facilitator superfamily protein 3932693 6411357 Rpal_3681 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001992656.1 3931485 R 395960 CDS YP_001992657.1 192292052 6411358 complement(3932909..3933337) 1 NC_011004.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: smd:Smed_5280 3-demethylubiquinone-9 3-methyltransferase; glyoxalase/bleomycin resistance protein/dioxygenase 3933337 6411358 Rpal_3682 Rhodopseudomonas palustris TIE-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001992657.1 3932909 R 395960 CDS YP_001992658.1 192292053 6411359 3933482..3933943 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: nha:Nham_3666 transcriptional regulator, MarR family; MarR family transcriptional regulator 3933943 6411359 Rpal_3683 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001992658.1 3933482 D 395960 CDS YP_001992659.1 192292054 6411360 complement(3934008..3936152) 1 NC_011004.1 PFAM: ABC transporter transmembrane region; ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_5078 ABC transporter ATPase and permease components; ABC transporter 3936152 6411360 Rpal_3684 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001992659.1 3934008 R 395960 CDS YP_001992660.1 192292055 6411361 complement(3936272..3938335) 1 NC_011004.1 PFAM: amine oxidase; methyltransferase type 11; KEGG: bbt:BBta_5079 hypothetical protein; amine oxidase 3938335 6411361 Rpal_3685 Rhodopseudomonas palustris TIE-1 amine oxidase YP_001992660.1 3936272 R 395960 CDS YP_001992661.1 192292056 6411362 complement(3938638..3942840) 1 NC_011004.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 3942840 6411362 Rpal_3686 Rhodopseudomonas palustris TIE-1 DNA-directed RNA polymerase subunit beta' YP_001992661.1 3938638 R 395960 CDS YP_001992662.1 192292057 6411363 complement(3942983..3947107) 1 NC_011004.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 3947107 rpoB 6411363 rpoB Rhodopseudomonas palustris TIE-1 DNA-directed RNA polymerase subunit beta YP_001992662.1 3942983 R 395960 CDS YP_001992663.1 192292058 6411364 complement(3947573..3947950) 1 NC_011004.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 3947950 rplL 6411364 rplL Rhodopseudomonas palustris TIE-1 50S ribosomal protein L7/L12 YP_001992663.1 3947573 R 395960 CDS YP_001992664.1 192292059 6411365 complement(3948006..3948524) 1 NC_011004.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 3948524 rplJ 6411365 rplJ Rhodopseudomonas palustris TIE-1 50S ribosomal protein L10 YP_001992664.1 3948006 R 395960 CDS YP_001992665.1 192292060 6411366 complement(3949427..3950377) 1 NC_011004.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bra:BRADO3050 glyoxylate reductase (glycolate reductase); D-isomer specific 2-hydroxyacid dehydrogenase 3950377 6411366 Rpal_3690 Rhodopseudomonas palustris TIE-1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001992665.1 3949427 R 395960 CDS YP_001992666.1 192292061 6411367 complement(3950477..3951166) 1 NC_011004.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 3951166 rplA 6411367 rplA Rhodopseudomonas palustris TIE-1 50S ribosomal protein L1 YP_001992666.1 3950477 R 395960 CDS YP_001992667.1 192292062 6411368 complement(3951174..3951602) 1 NC_011004.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 3951602 rplK 6411368 rplK Rhodopseudomonas palustris TIE-1 50S ribosomal protein L11 YP_001992667.1 3951174 R 395960 CDS YP_001992668.1 192292063 6411369 complement(3951825..3952355) 1 NC_011004.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 3952355 nusG 6411369 nusG Rhodopseudomonas palustris TIE-1 transcription antitermination protein NusG YP_001992668.1 3951825 R 395960 CDS YP_001992669.1 192292064 6411370 complement(3952372..3952560) 1 NC_011004.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 3952560 secE 6411370 secE Rhodopseudomonas palustris TIE-1 preprotein translocase subunit SecE YP_001992669.1 3952372 R 395960 CDS YP_001992670.1 192292065 6411371 complement(3952889..3953737) 1 NC_011004.1 TIGRFAM: TonB family protein; KEGG: atc:AGR_C_267 TonB protein; TonB family protein 3953737 6411371 Rpal_3695 Rhodopseudomonas palustris TIE-1 TonB family protein YP_001992670.1 3952889 R 395960 CDS YP_001992671.1 192292066 6411372 complement(3953734..3954183) 1 NC_011004.1 PFAM: biopolymer transport protein ExbD/TolR; KEGG: atc:AGR_C_265 biopolymer transport ExbD protein; biopolymer transport protein ExbD/TolR 3954183 6411372 Rpal_3696 Rhodopseudomonas palustris TIE-1 biopolymer transport protein ExbD/TolR YP_001992671.1 3953734 R 395960 CDS YP_001992672.1 192292067 6411373 complement(3954198..3955148) 1 NC_011004.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: oan:Oant_1254 TonB-system energizer ExbB type-1; tonB-system energizer ExbB 3955148 6411373 Rpal_3697 Rhodopseudomonas palustris TIE-1 tonB-system energizer ExbB YP_001992672.1 3954198 R 395960 CDS YP_001992673.1 192292068 6411374 complement(3955145..3955828) 1 NC_011004.1 PFAM: Haem oxygenase-like; KEGG: atc:AGR_C_4545 heme oxygenase; Haem oxygenase-like protein 3955828 6411374 Rpal_3698 Rhodopseudomonas palustris TIE-1 Haem oxygenase-like protein YP_001992673.1 3955145 R 395960 CDS YP_001992674.1 192292069 6411375 complement(3955930..3959490) 1 NC_011004.1 TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: plu:plu0739 hypothetical protein; TonB-dependent heme/hemoglobin receptor family protein 3959490 6411375 Rpal_3699 Rhodopseudomonas palustris TIE-1 TonB-dependent heme/hemoglobin receptor family protein YP_001992674.1 3955930 R 395960 CDS YP_001992675.1 192292070 6411376 complement(3959566..3960531) 1 NC_011004.1 PFAM: FecR protein; KEGG: nwi:Nwi_1969 FecR protein; anti-FecI sigma factor FecR 3960531 6411376 Rpal_3700 Rhodopseudomonas palustris TIE-1 anti-FecI sigma factor FecR YP_001992675.1 3959566 R 395960 CDS YP_001992676.1 192292071 6411377 complement(3960674..3961204) 1 NC_011004.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 3961204 6411377 Rpal_3701 Rhodopseudomonas palustris TIE-1 ECF subfamily RNA polymerase sigma-24 subunit YP_001992676.1 3960674 R 395960 CDS YP_001992677.1 192292072 6411379 complement(3961713..3962039) 1 NC_011004.1 KEGG: xau:Xaut_3357 hypothetical protein; hypothetical protein 3962039 6411379 Rpal_3702 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992677.1 3961713 R 395960 CDS YP_001992678.1 192292073 6411380 complement(3962056..3963246) 1 NC_011004.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 3963246 6411380 Rpal_3703 Rhodopseudomonas palustris TIE-1 elongation factor Tu YP_001992678.1 3962056 R 395960 CDS YP_001992679.1 192292074 6411381 3963432..3964655 1 NC_011004.1 PFAM: beta-lactamase; KEGG: bja:blr5441 hypothetical protein; beta-lactamase 3964655 6411381 Rpal_3704 Rhodopseudomonas palustris TIE-1 beta-lactamase YP_001992679.1 3963432 D 395960 CDS YP_001992680.1 192292075 6411382 complement(3964809..3965576) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO3043 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3965576 6411382 Rpal_3705 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001992680.1 3964809 R 395960 CDS YP_001992681.1 192292076 6411383 complement(3965760..3966515) 1 NC_011004.1 PFAM: phosphoglycerate mutase; KEGG: bbt:BBta_5099 phosphoglycerate mutase family protein; phosphoglycerate mutase 3966515 6411383 Rpal_3706 Rhodopseudomonas palustris TIE-1 phosphoglycerate mutase YP_001992681.1 3965760 R 395960 CDS YP_001992682.1 192292077 6411384 3966672..3967457 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO3041 short-chain dehydrogenase/reductase SDR family protein; short-chain dehydrogenase/reductase SDR 3967457 6411384 Rpal_3707 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001992682.1 3966672 D 395960 CDS YP_001992683.1 192292078 6411385 3967699..3968658 1 NC_011004.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: cak:Caul_4355 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 3968658 6411385 Rpal_3708 Rhodopseudomonas palustris TIE-1 transposase IS116/IS110/IS902 family protein YP_001992683.1 3967699 D 395960 CDS YP_001992684.1 192292079 6411386 complement(3968769..3969827) 1 NC_011004.1 PFAM: aminoglycoside phosphotransferase; KEGG: bra:BRADO3036 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 3969827 6411386 Rpal_3709 Rhodopseudomonas palustris TIE-1 aminoglycoside phosphotransferase YP_001992684.1 3968769 R 395960 CDS YP_001992685.1 192292080 6411387 complement(3969979..3971211) 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bra:BRADO3035 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3971211 6411387 Rpal_3710 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001992685.1 3969979 R 395960 CDS YP_001992686.1 192292081 6411388 3971456..3972118 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: bja:blr5456 transcriptional regulatory protein; TetR family transcriptional regulator 3972118 6411388 Rpal_3711 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001992686.1 3971456 D 395960 CDS YP_001992687.1 192292082 6411389 complement(3972148..3973809) 1 NC_011004.1 KEGG: bbt:BBta_1448 membrane transport protein; membrane transport protein 3973809 6411389 Rpal_3712 Rhodopseudomonas palustris TIE-1 membrane transport protein YP_001992687.1 3972148 R 395960 CDS YP_001992688.1 192292083 6411390 complement(3974019..3974285) 1 NC_011004.1 hypothetical protein 3974285 6411390 Rpal_3713 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992688.1 3974019 R 395960 CDS YP_001992689.1 192292084 6411391 complement(3974611..3975363) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: jan:Jann_1385 ABC transporter; ABC transporter 3975363 6411391 Rpal_3714 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001992689.1 3974611 R 395960 CDS YP_001992690.1 192292085 6411392 complement(3975360..3976130) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: jan:Jann_1384 ABC transporter; ABC transporter 3976130 6411392 Rpal_3715 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001992690.1 3975360 R 395960 CDS YP_001992691.1 192292086 6411393 complement(3976127..3977350) 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: sit:TM1040_1513 inner-membrane translocator; inner-membrane translocator 3977350 6411393 Rpal_3716 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001992691.1 3976127 R 395960 CDS YP_001992692.1 192292087 6411394 complement(3977355..3978362) 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: sit:TM1040_1512 inner-membrane translocator; inner-membrane translocator 3978362 6411394 Rpal_3717 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001992692.1 3977355 R 395960 CDS YP_001992693.1 192292088 6411395 complement(3978609..3979961) 1 NC_011004.1 KEGG: dsh:Dshi_1404 branched-chain amino acid ABC transporter periplasmic binding protein; branched-chain amino acid ABC transporter periplasmic binding protein 3979961 6411395 Rpal_3718 Rhodopseudomonas palustris TIE-1 branched-chain amino acid ABC transporter periplasmic binding protein YP_001992693.1 3978609 R 395960 CDS YP_001992694.1 192292089 6411396 complement(3980407..3981792) 1 NC_011004.1 KEGG: azc:AZC_1612 hypothetical protein; hypothetical protein 3981792 6411396 Rpal_3719 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992694.1 3980407 R 395960 CDS YP_001992695.1 192292090 6411397 complement(3981956..3983512) 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pla:Plav_0154 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3983512 6411397 Rpal_3720 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001992695.1 3981956 R 395960 CDS YP_001992696.1 192292091 6411398 complement(3983430..3984212) 1 NC_011004.1 PFAM: regulatory protein TetR; Bacterio-opsin activator HTH domain protein; KEGG: sus:Acid_5697 transcriptional regulator, TetR family; TetR family transcriptional regulator 3984212 6411398 Rpal_3721 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001992696.1 3983430 R 395960 CDS YP_001992697.1 192292092 6411399 3984339..3985523 1 NC_011004.1 PFAM: Thiolase; KEGG: mpt:Mpe_A0178 lipid-transfer protein; lipid-transfer protein 3985523 6411399 Rpal_3722 Rhodopseudomonas palustris TIE-1 lipid-transfer protein YP_001992697.1 3984339 D 395960 CDS YP_001992698.1 192292093 6411400 3985535..3985981 1 NC_011004.1 KEGG: pla:Plav_0156 hypothetical protein; hypothetical protein 3985981 6411400 Rpal_3723 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992698.1 3985535 D 395960 CDS YP_001992699.1 192292094 6411401 3985978..3986403 1 NC_011004.1 PFAM: MaoC domain protein dehydratase; KEGG: pla:Plav_0157 MaoC domain protein dehydratase; MaoC domain-containing protein dehydratase 3986403 6411401 Rpal_3724 Rhodopseudomonas palustris TIE-1 MaoC domain-containing protein dehydratase YP_001992699.1 3985978 D 395960 CDS YP_001992700.1 192292095 6411402 3986427..3987254 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pla:Plav_0158 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3987254 6411402 Rpal_3725 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001992700.1 3986427 D 395960 CDS YP_001992701.1 192292096 6411403 3987269..3988045 1 NC_011004.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xau:Xaut_0903 enoyl-CoA hydratase PaaB; Enoyl-CoA hydratase/isomerase 3988045 6411403 Rpal_3726 Rhodopseudomonas palustris TIE-1 Enoyl-CoA hydratase/isomerase YP_001992701.1 3987269 D 395960 CDS YP_001992702.1 192292097 6411404 3988307..3989416 1 NC_011004.1 KEGG: bbt:BBta_6826 copper-containing nitrite reductase (NO-forming) NirK; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; nitrite reductase 3989416 6411404 Rpal_3727 Rhodopseudomonas palustris TIE-1 nitrite reductase YP_001992702.1 3988307 D 395960 CDS YP_001992703.1 192292098 6411405 complement(3989446..3990216) 1 NC_011004.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bbt:BBta_3799 exodeoxyribonuclease III; exodeoxyribonuclease III Xth 3990216 6411405 Rpal_3728 Rhodopseudomonas palustris TIE-1 exodeoxyribonuclease III Xth YP_001992703.1 3989446 R 395960 CDS YP_001992704.1 192292099 6411406 complement(3990366..3991235) 1 NC_011004.1 KEGG: cak:Caul_0468 hypothetical protein; hypothetical protein 3991235 6411406 Rpal_3729 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992704.1 3990366 R 395960 CDS YP_001992705.1 192292100 6411408 3991661..3992170 1 NC_011004.1 PFAM: protein of unknown function DUF892; KEGG: bja:bll7648 hypothetical protein; hypothetical protein 3992170 6411408 Rpal_3730 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992705.1 3991661 D 395960 CDS YP_001992706.1 192292101 6411409 3992185..3992751 1 NC_011004.1 KEGG: bra:BRADO3437 hypothetical protein; hypothetical protein 3992751 6411409 Rpal_3731 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992706.1 3992185 D 395960 CDS YP_001992707.1 192292102 6411410 3992895..3995012 1 NC_011004.1 PFAM: catalase domain protein; KEGG: sme:SMb20007 probable catalase C protein; catalase 3995012 6411410 Rpal_3732 Rhodopseudomonas palustris TIE-1 catalase YP_001992707.1 3992895 D 395960 CDS YP_001992708.1 192292103 6411411 3995228..3997429 1 NC_011004.1 KEGG: gbe:GbCGDNIH1_0916 isoamylase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 3997429 6411411 Rpal_3733 Rhodopseudomonas palustris TIE-1 glycogen debranching protein GlgX YP_001992708.1 3995228 D 395960 CDS YP_001992709.1 192292104 6411412 3997589..3998437 1 NC_011004.1 PFAM: transglutaminase domain protein; KEGG: mrd:Mrad2831_2448 transglutaminase domain protein; transglutaminase domain-containing protein 3998437 6411412 Rpal_3734 Rhodopseudomonas palustris TIE-1 transglutaminase domain-containing protein YP_001992709.1 3997589 D 395960 CDS YP_001992710.1 192292105 6411413 complement(3998619..3998831) 1 NC_011004.1 KEGG: bbt:BBta_4265 hypothetical protein; hypothetical protein 3998831 6411413 Rpal_3735 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992710.1 3998619 R 395960 CDS YP_001992711.1 192292106 6411414 complement(3998902..4000101) 1 NC_011004.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mex:Mext_4798 2-alkenal reductase; 2-alkenal reductase 4000101 6411414 Rpal_3736 Rhodopseudomonas palustris TIE-1 2-alkenal reductase YP_001992711.1 3998902 R 395960 CDS YP_001992712.1 192292107 6411415 4000402..4001076 1 NC_011004.1 PFAM: peptidase M50; KEGG: bja:bll3910 hypothetical protein; peptidase M50 4001076 6411415 Rpal_3737 Rhodopseudomonas palustris TIE-1 peptidase M50 YP_001992712.1 4000402 D 395960 CDS YP_001992713.1 192292108 6411416 complement(4001763..4001981) 1 NC_011004.1 hypothetical protein 4001981 6411416 Rpal_3738 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992713.1 4001763 R 395960 CDS YP_001992714.1 192292109 6411417 4002282..4005419 1 NC_011004.1 PFAM: CheB methylesterase; MCP methyltransferase CheR-type; HWE histidine kinase; PAS fold-4 domain protein; KEGG: nha:Nham_4605 MCP methyltransferase, CheR-type; CheR-type MCP methyltransferase 4005419 6411417 Rpal_3739 Rhodopseudomonas palustris TIE-1 CheR-type MCP methyltransferase YP_001992714.1 4002282 D 395960 CDS YP_001992715.1 192292110 6411418 complement(4005488..4005886) 1 NC_011004.1 KEGG: mrd:Mrad2831_5711 hypothetical protein; hypothetical protein 4005886 6411418 Rpal_3740 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992715.1 4005488 R 395960 CDS YP_001992716.1 192292111 6411419 complement(4005898..4006626) 1 NC_011004.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mes:Meso_1485 cyclic nucleotide-binding protein; Crp/Fnr family transcriptional regulator 4006626 6411419 Rpal_3741 Rhodopseudomonas palustris TIE-1 Crp/Fnr family transcriptional regulator YP_001992716.1 4005898 R 395960 CDS YP_001992717.1 192292112 6411421 4007763..4008443 1 NC_011004.1 KEGG: bbt:BBta_1078 hypothetical protein; hypothetical protein 4008443 6411421 Rpal_3743 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992717.1 4007763 D 395960 CDS YP_001992718.1 192292113 6411422 complement(4008571..4010067) 1 NC_011004.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: bra:BRADO0757 phosphomannomutase/phosphoglucomutase (PMM / PGM); phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II 4010067 6411422 Rpal_3744 Rhodopseudomonas palustris TIE-1 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II YP_001992718.1 4008571 R 395960 CDS YP_001992719.1 192292114 6411423 complement(4010114..4011550) 1 NC_011004.1 KEGG: nwi:Nwi_1075 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; nucleotidyl transferase; cupin; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 4011550 6411423 Rpal_3745 Rhodopseudomonas palustris TIE-1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_001992719.1 4010114 R 395960 CDS YP_001992720.1 192292115 6411424 complement(4011786..4013558) 1 NC_011004.1 KEGG: tcr:507895.124 hypothetical protein PROSITE: ALA_RICH ARG_RICH GLU_RICH NLS_BP; hypothetical protein 4013558 6411424 Rpal_3746 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992720.1 4011786 R 395960 CDS YP_001992721.1 192292116 6411425 complement(4013899..4014768) 1 NC_011004.1 KEGG: ava:Ava_4835 hypothetical protein; hypothetical protein 4014768 6411425 Rpal_3747 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992721.1 4013899 R 395960 CDS YP_001992722.1 192292117 6411426 4016464..4016949 1 NC_011004.1 KEGG: bvi:Bcep1808_6712 hypothetical protein; hypothetical protein 4016949 6411426 Rpal_3748 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992722.1 4016464 D 395960 CDS YP_001992723.1 192292118 6411427 complement(4017554..4017970) 1 NC_011004.1 SMART: helix-turn-helix domain protein; KEGG: mmw:Mmwyl1_4217 helix-turn-helix domain protein; helix-turn-helix domain-containing protein 4017970 6411427 Rpal_3749 Rhodopseudomonas palustris TIE-1 helix-turn-helix domain-containing protein YP_001992723.1 4017554 R 395960 CDS YP_001992724.1 192292119 6411428 complement(4018349..4020106) 1 NC_011004.1 PFAM: Curlin associated repeat protein; KEGG: mul:MUL_3169 PPE family protein; curlin associated repeat-containing protein 4020106 6411428 Rpal_3750 Rhodopseudomonas palustris TIE-1 curlin associated repeat-containing protein YP_001992724.1 4018349 R 395960 CDS YP_001992725.1 192292120 6411429 4020664..4021047 1 NC_011004.1 KEGG: rsq:Rsph17025_3601 hypothetical protein; hypothetical protein 4021047 6411429 Rpal_3751 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992725.1 4020664 D 395960 CDS YP_001992726.1 192292121 6411430 4021032..4021562 1 NC_011004.1 KEGG: gbe:GbCGDNIH1_1408 hemagglutinin-related protein; hypothetical protein 4021562 6411430 Rpal_3752 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992726.1 4021032 D 395960 CDS YP_001992727.1 192292122 6411431 4021595..4021879 1 NC_011004.1 KEGG: pen:PSEEN2838 curli production assembly/transport component CsgF precursor; hypothetical protein 4021879 6411431 Rpal_3753 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992727.1 4021595 D 395960 CDS YP_001992728.1 192292123 6411432 4021936..4022811 1 NC_011004.1 PFAM: Curli production assembly/transport component CsgG; KEGG: bur:Bcep18194_B2588 curli production assembly/transport component CsgG; curli production assembly/transport component CsgG 4022811 6411432 Rpal_3754 Rhodopseudomonas palustris TIE-1 curli production assembly/transport component CsgG YP_001992728.1 4021936 D 395960 CDS YP_001992729.1 192292124 6411433 complement(4023064..4023453) 1 NC_011004.1 KEGG: dre:570672 similar to synapsin Ia; hypothetical protein 4023453 6411433 Rpal_3755 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992729.1 4023064 R 395960 CDS YP_001992730.1 192292125 6411434 complement(4023588..4023929) 1 NC_011004.1 KEGG: psa:PST_2861 PPE-repeat protein; hypothetical protein 4023929 6411434 Rpal_3756 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992730.1 4023588 R 395960 CDS YP_001992731.1 192292126 6411435 complement(4024104..4024289) 1 NC_011004.1 hypothetical protein 4024289 6411435 Rpal_3757 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992731.1 4024104 R 395960 CDS YP_001992732.1 192292127 6411436 complement(4024495..4025202) 1 NC_011004.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: mrd:Mrad2831_0013 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase 4025202 6411436 Rpal_3758 Rhodopseudomonas palustris TIE-1 4'-phosphopantetheinyl transferase YP_001992732.1 4024495 R 395960 CDS YP_001992733.1 192292128 6411437 complement(4025218..4026246) 1 NC_011004.1 PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: nfa:nfa7580 hypothetical protein; hypothetical protein 4026246 6411437 Rpal_3759 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992733.1 4025218 R 395960 CDS YP_001992734.1 192292129 6411438 complement(4026388..4028697) 1 NC_011004.1 PFAM: condensation domain protein; KEGG: mes:Meso_2581 condensation domain; condensation domain-containing protein 4028697 6411438 Rpal_3760 Rhodopseudomonas palustris TIE-1 condensation domain-containing protein YP_001992734.1 4026388 R 395960 CDS YP_001992735.1 192292130 6411439 complement(4028694..4036742) 1 NC_011004.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; beta-ketoacyl synthase ; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; amino acid adenylation domain-containing protein 4036742 6411439 Rpal_3761 Rhodopseudomonas palustris TIE-1 amino acid adenylation domain-containing protein YP_001992735.1 4028694 R 395960 CDS YP_001992736.1 192292131 6411440 complement(4036765..4038678) 1 NC_011004.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: mxa:MXAN_4601 non-ribosomal peptide synthase; amino acid adenylation domain-containing protein 4038678 6411440 Rpal_3762 Rhodopseudomonas palustris TIE-1 amino acid adenylation domain-containing protein YP_001992736.1 4036765 R 395960 CDS YP_001992737.1 192292132 6411441 4039166..4040305 1 NC_011004.1 PFAM: acyltransferase 3; KEGG: rle:RL3831 O-acetyl transferase; acyltransferase 3 4040305 6411441 Rpal_3763 Rhodopseudomonas palustris TIE-1 acyltransferase 3 YP_001992737.1 4039166 D 395960 CDS YP_001992738.1 192292133 6411442 4040396..4042213 1 NC_011004.1 KEGG: bbt:BBta_1040 hypothetical protein; hypothetical protein 4042213 6411442 Rpal_3764 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992738.1 4040396 D 395960 CDS YP_001992739.1 192292134 6411443 4042276..4043397 1 NC_011004.1 PFAM: glycosyl transferase group 1; KEGG: bbt:BBta_1074 glycosyl transferase, group 1; group 1 glycosyl transferase 4043397 6411443 Rpal_3765 Rhodopseudomonas palustris TIE-1 group 1 glycosyl transferase YP_001992739.1 4042276 D 395960 CDS YP_001992740.1 192292135 6411444 4043534..4045282 1 NC_011004.1 PFAM: FAD dependent oxidoreductase; GMC oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mes:Meso_2585 glucose-methanol-choline oxidoreductase; GMC oxidoreductase 4045282 6411444 Rpal_3766 Rhodopseudomonas palustris TIE-1 GMC oxidoreductase YP_001992740.1 4043534 D 395960 CDS YP_001992741.1 192292136 6411445 complement(4045277..4046719) 1 NC_011004.1 KEGG: bbt:BBta_1039 membrane protein of unknown function; hypothetical protein 4046719 6411445 Rpal_3767 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992741.1 4045277 R 395960 CDS YP_001992742.1 192292137 6411446 4047213..4048313 1 NC_011004.1 PFAM: glycosyl transferase group 1; KEGG: bbt:BBta_1042 glycosyl transferase group 1; group 1 glycosyl transferase 4048313 6411446 Rpal_3768 Rhodopseudomonas palustris TIE-1 group 1 glycosyl transferase YP_001992742.1 4047213 D 395960 CDS YP_001992743.1 192292138 6411447 4048336..4049226 1 NC_011004.1 KEGG: mrd:Mrad2831_4549 glycosyl transferase group 1; group 1 glycosyl transferase 4049226 6411447 Rpal_3769 Rhodopseudomonas palustris TIE-1 group 1 glycosyl transferase YP_001992743.1 4048336 D 395960 CDS YP_001992744.1 192292139 6411448 complement(4049331..4050824) 1 NC_011004.1 PFAM: polysaccharide biosynthesis protein; KEGG: bbt:BBta_1044 membrane protein of unknown function with polysaccharide biosynthesis protein domain; polysaccharide biosynthesis protein 4050824 6411448 Rpal_3770 Rhodopseudomonas palustris TIE-1 polysaccharide biosynthesis protein YP_001992744.1 4049331 R 395960 CDS YP_001992745.1 192292140 6411449 complement(4050966..4052102) 1 NC_011004.1 PFAM: acyltransferase 3; KEGG: xau:Xaut_1956 acyltransferase 3; acyltransferase 3 4052102 6411449 Rpal_3771 Rhodopseudomonas palustris TIE-1 acyltransferase 3 YP_001992745.1 4050966 R 395960 CDS YP_001992746.1 192292141 6411450 4052712..4053857 1 NC_011004.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mes:Meso_2584 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 4053857 6411450 Rpal_3772 Rhodopseudomonas palustris TIE-1 DegT/DnrJ/EryC1/StrS aminotransferase YP_001992746.1 4052712 D 395960 CDS YP_001992747.1 192292142 6411451 4053933..4054739 1 NC_011004.1 PFAM: glycosyl transferase family 25; KEGG: mpt:Mpe_A0728 glycosyltransferase involved in LPS biosynthesis-like protein; glycosyl transferase family protein 4054739 6411451 Rpal_3773 Rhodopseudomonas palustris TIE-1 glycosyl transferase family protein YP_001992747.1 4053933 D 395960 CDS YP_001992748.1 192292143 6411452 4054770..4055888 1 NC_011004.1 PFAM: glycosyl transferase group 1; KEGG: bbt:BBta_1037 glycosyltransferase group 1 family protein; group 1 glycosyl transferase 4055888 6411452 Rpal_3774 Rhodopseudomonas palustris TIE-1 group 1 glycosyl transferase YP_001992748.1 4054770 D 395960 CDS YP_001992749.1 192292144 6411453 complement(4055885..4056661) 1 NC_011004.1 PFAM: metallophosphoesterase; KEGG: bbt:BBta_1036 serine/threonine protein phosphatase; metallophosphoesterase 4056661 6411453 Rpal_3775 Rhodopseudomonas palustris TIE-1 metallophosphoesterase YP_001992749.1 4055885 R 395960 CDS YP_001992750.1 192292145 6411454 4056911..4057549 1 NC_011004.1 KEGG: bbt:BBta_1035 exported protein of unknown function; hypothetical protein 4057549 6411454 Rpal_3776 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992750.1 4056911 D 395960 CDS YP_001992751.1 192292146 6411455 4057608..4059956 1 NC_011004.1 KEGG: bbt:BBta_1034 tyrosine-protein kinase injvolved in exopolysaccharide polymerization; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; capsular polysaccharide biosynthesis protein 4059956 6411455 Rpal_3777 Rhodopseudomonas palustris TIE-1 capsular polysaccharide biosynthesis protein YP_001992751.1 4057608 D 395960 CDS YP_001992752.1 192292147 6411456 4060013..4060669 1 NC_011004.1 KEGG: bbt:BBta_1033 exported protein of unknown function; hypothetical protein 4060669 6411456 Rpal_3778 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992752.1 4060013 D 395960 CDS YP_001992753.1 192292148 6411457 4061574..4062248 1 NC_011004.1 PFAM: sugar transferase; KEGG: atc:AGR_L_2989 hypothetical protein; undecaprenyl-phosphate galactose phosphotransferase 4062248 6411457 Rpal_3779 Rhodopseudomonas palustris TIE-1 undecaprenyl-phosphate galactose phosphotransferase YP_001992753.1 4061574 D 395960 CDS YP_001992754.1 192292149 6411458 4063029..4063691 1 NC_011004.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: bbt:BBta_1030 exported protein of unknown function; transglutaminase 4063691 6411458 Rpal_3780 Rhodopseudomonas palustris TIE-1 transglutaminase YP_001992754.1 4063029 D 395960 CDS YP_001992755.1 192292150 6411459 complement(4063752..4065185) 1 NC_011004.1 PFAM: O-antigen polymerase; KEGG: bbt:BBta_1029 O-antigen polymerase, membrane protein; O-antigen polymerase 4065185 6411459 Rpal_3781 Rhodopseudomonas palustris TIE-1 O-antigen polymerase YP_001992755.1 4063752 R 395960 CDS YP_001992756.1 192292151 6411460 complement(4065182..4066390) 1 NC_011004.1 PFAM: polysaccharide export protein; KEGG: bbt:BBta_1028 capsule polysaccharide export outer membrane protein; polysaccharide export protein 4066390 6411460 Rpal_3782 Rhodopseudomonas palustris TIE-1 polysaccharide export protein YP_001992756.1 4065182 R 395960 CDS YP_001992757.1 192292152 6411461 4067152..4067403 1 NC_011004.1 KEGG: bra:BRADO4758 conserved hypothetical protein, membrane protein; hypothetical protein 4067403 6411461 Rpal_3783 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992757.1 4067152 D 395960 CDS YP_001992758.1 192292153 6411462 4067632..4067913 1 NC_011004.1 KEGG: bbt:BBta_1063 exported protein of unknown function; hypothetical protein 4067913 6411462 Rpal_3784 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992758.1 4067632 D 395960 CDS YP_001992759.1 192292154 6411463 complement(4068532..4068807) 1 NC_011004.1 hypothetical protein 4068807 6411463 Rpal_3785 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992759.1 4068532 R 395960 CDS YP_001992760.1 192292155 6411464 4069313..4070770 1 NC_011004.1 KEGG: mrd:Mrad2831_2505 hypothetical protein; hypothetical protein 4070770 6411464 Rpal_3786 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992760.1 4069313 D 395960 CDS YP_001992761.1 192292156 6411465 complement(4070798..4071070) 1 NC_011004.1 hypothetical protein 4071070 6411465 Rpal_3787 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992761.1 4070798 R 395960 CDS YP_001992762.1 192292157 6411466 complement(4071081..4071710) 1 NC_011004.1 hypothetical protein 4071710 6411466 Rpal_3788 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992762.1 4071081 R 395960 CDS YP_001992763.1 192292158 6411467 complement(4071781..4072152) 1 NC_011004.1 hypothetical protein 4072152 6411467 Rpal_3789 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992763.1 4071781 R 395960 CDS YP_001992764.1 192292159 6411468 4072636..4073016 1 NC_011004.1 hypothetical protein 4073016 6411468 Rpal_3790 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992764.1 4072636 D 395960 CDS YP_001992765.1 192292160 6411469 4073099..4073884 1 NC_011004.1 hypothetical protein 4073884 6411469 Rpal_3791 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992765.1 4073099 D 395960 CDS YP_001992766.1 192292161 6411470 complement(4073916..4074260) 1 NC_011004.1 hypothetical protein 4074260 6411470 Rpal_3792 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992766.1 4073916 R 395960 CDS YP_001992767.1 192292162 6411471 complement(4074257..4074742) 1 NC_011004.1 PFAM: VRR-NUC domain protein; KEGG: ppu:PP_1554 hypothetical protein; VRR-NUC domain-containing protein 4074742 6411471 Rpal_3793 Rhodopseudomonas palustris TIE-1 VRR-NUC domain-containing protein YP_001992767.1 4074257 R 395960 CDS YP_001992768.1 192292163 6411472 complement(4074742..4075620) 1 NC_011004.1 PFAM: metallophosphoesterase; KEGG: pnu:Pnuc_0863 metallophosphoesterase; metallophosphoesterase 4075620 6411472 Rpal_3794 Rhodopseudomonas palustris TIE-1 metallophosphoesterase YP_001992768.1 4074742 R 395960 CDS YP_001992769.1 192292164 6411473 complement(4075610..4075975) 1 NC_011004.1 hypothetical protein 4075975 6411473 Rpal_3795 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992769.1 4075610 R 395960 CDS YP_001992770.1 192292165 6411474 4076122..4076439 1 NC_011004.1 hypothetical protein 4076439 6411474 Rpal_3796 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992770.1 4076122 D 395960 CDS YP_001992771.1 192292166 6411475 complement(4076411..4076917) 1 NC_011004.1 hypothetical protein 4076917 6411475 Rpal_3797 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992771.1 4076411 R 395960 CDS YP_001992772.1 192292167 6411476 4077035..4077343 1 NC_011004.1 hypothetical protein 4077343 6411476 Rpal_3798 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992772.1 4077035 D 395960 CDS YP_001992773.1 192292168 6411477 4077327..4077614 1 NC_011004.1 hypothetical protein 4077614 6411477 Rpal_3799 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992773.1 4077327 D 395960 CDS YP_001992774.1 192292169 6411478 4077614..4078201 1 NC_011004.1 KEGG: afm:AFUA_6G04940 cytokinesis protein SepA/Bni1; hypothetical protein 4078201 6411478 Rpal_3800 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992774.1 4077614 D 395960 CDS YP_001992775.1 192292170 6411479 4078185..4078844 1 NC_011004.1 hypothetical protein 4078844 6411479 Rpal_3801 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992775.1 4078185 D 395960 CDS YP_001992776.1 192292171 6411480 complement(4079396..4082080) 1 NC_011004.1 PFAM: type III restriction protein res subunit; KEGG: btr:Btr_1179 hypothetical protein; type III restriction protein res subunit 4082080 6411480 Rpal_3802 Rhodopseudomonas palustris TIE-1 type III restriction protein res subunit YP_001992776.1 4079396 R 395960 CDS YP_001992777.1 192292172 6411481 complement(4082080..4083780) 1 NC_011004.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: btr:Btr_1180 methyltransferase; adenine-specific DNA-methyltransferase 4083780 6411481 Rpal_3803 Rhodopseudomonas palustris TIE-1 adenine-specific DNA-methyltransferase YP_001992777.1 4082080 R 395960 CDS YP_001992778.1 192292173 6411482 complement(4083777..4086662) 1 NC_011004.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ecw:EcE24377A_3320 helicase, SNF2 family; SNF2-like protein 4086662 6411482 Rpal_3804 Rhodopseudomonas palustris TIE-1 SNF2-like protein YP_001992778.1 4083777 R 395960 CDS YP_001992779.1 192292174 6411483 complement(4086788..4087240) 1 NC_011004.1 KEGG: bur:Bcep18194_B3081 transcriptional regulator, LysR family; hypothetical protein 4087240 6411483 Rpal_3805 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992779.1 4086788 R 395960 CDS YP_001992780.1 192292175 6411484 4087804..4088181 1 NC_011004.1 KEGG: bbt:BBta_3430 hypothetical protein; hypothetical protein 4088181 6411484 Rpal_3806 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992780.1 4087804 D 395960 CDS YP_001992781.1 192292176 6411485 4088192..4088641 1 NC_011004.1 KEGG: bbt:BBta_3319 hypothetical protein; hypothetical protein 4088641 6411485 Rpal_3807 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992781.1 4088192 D 395960 CDS YP_001992782.1 192292177 6411486 4088641..4089381 1 NC_011004.1 PFAM: protein of unknown function DUF159; KEGG: bbt:BBta_3432 hypothetical protein; hypothetical protein 4089381 6411486 Rpal_3808 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992782.1 4088641 D 395960 CDS YP_001992783.1 192292178 6411487 4089353..4090591 1 NC_011004.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: bra:BRADO1464 DNA polymerase IV; DNA-directed DNA polymerase 4090591 6411487 Rpal_3809 Rhodopseudomonas palustris TIE-1 DNA-directed DNA polymerase YP_001992783.1 4089353 D 395960 CDS YP_001992784.1 192292179 6411488 complement(4091174..4091731) 1 NC_011004.1 hypothetical protein 4091731 6411488 Rpal_3810 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992784.1 4091174 R 395960 CDS YP_001992785.1 192292180 6411489 complement(4092091..4094613) 1 NC_011004.1 hypothetical protein 4094613 6411489 Rpal_3811 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992785.1 4092091 R 395960 CDS YP_001992786.1 192292181 6411490 complement(4094973..4095419) 1 NC_011004.1 hypothetical protein 4095419 6411490 Rpal_3812 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992786.1 4094973 R 395960 CDS YP_001992787.1 192292182 6411491 4095502..4097526 1 NC_011004.1 PFAM: ATPase AAA; ATPase AAA; SMART: ATPase AAA; KEGG: nha:Nham_1979 ATPase AAA, central region; ATPase AAA 4097526 6411491 Rpal_3813 Rhodopseudomonas palustris TIE-1 ATPase AAA YP_001992787.1 4095502 D 395960 CDS YP_001992788.1 192292183 6411492 4097538..4097846 1 NC_011004.1 KEGG: nha:Nham_1977 hypothetical protein; hypothetical protein 4097846 6411492 Rpal_3814 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992788.1 4097538 D 395960 CDS YP_001992789.1 192292184 6411493 4097849..4098031 1 NC_011004.1 hypothetical protein 4098031 6411493 Rpal_3815 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992789.1 4097849 D 395960 CDS YP_001992790.1 192292185 6411494 complement(4098748..4099521) 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: nfa:nfa54420 hydrolase; alpha/beta hydrolase fold protein 4099521 6411494 Rpal_3816 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001992790.1 4098748 R 395960 CDS YP_001992791.1 192292186 6411495 complement(4100163..4100795) 1 NC_011004.1 PFAM: integrase family protein; KEGG: bps:BPSL0587 phage integrase family protein; integrase family protein 4100795 6411495 Rpal_3817 Rhodopseudomonas palustris TIE-1 integrase family protein YP_001992791.1 4100163 R 395960 CDS YP_001992792.1 192292187 6411496 4101741..4102538 1 NC_011004.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: syn:sll1169 hypothetical protein; Crp/Fnr family transcriptional regulator 4102538 6411496 Rpal_3818 Rhodopseudomonas palustris TIE-1 Crp/Fnr family transcriptional regulator YP_001992792.1 4101741 D 395960 CDS YP_001992793.1 192292188 6411497 complement(4102591..4103547) 1 NC_011004.1 PFAM: HWE histidine kinase; KEGG: bra:BRADO2814 conserved hypothetical protein; sensor histidine kinase (HWE family); signal transduction histidine kinase 4103547 6411497 Rpal_3819 Rhodopseudomonas palustris TIE-1 signal transduction histidine kinase YP_001992793.1 4102591 R 395960 CDS YP_001992794.1 192292189 6411498 complement(4103597..4104112) 1 NC_011004.1 KEGG: rsp:RSP_3992 hypothetical protein; hypothetical protein 4104112 6411498 Rpal_3820 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992794.1 4103597 R 395960 CDS YP_001992795.1 192292190 6411499 4104341..4104514 1 NC_011004.1 PFAM: protein of unknown function DUF1328; KEGG: rle:RL4195 transmembrane protein; hypothetical protein 4104514 6411499 Rpal_3821 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992795.1 4104341 D 395960 CDS YP_001992796.1 192292191 6411500 4104651..4105955 1 NC_011004.1 KEGG: ana:alr5319 hypothetical protein; hypothetical protein 4105955 6411500 Rpal_3822 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992796.1 4104651 D 395960 CDS YP_001992797.1 192292192 6411501 4106218..4107471 1 NC_011004.1 PFAM: sodium/hydrogen exchanger; KEGG: mrd:Mrad2831_6040 sodium/hydrogen exchanger; sodium/hydrogen exchanger 4107471 6411501 Rpal_3823 Rhodopseudomonas palustris TIE-1 sodium/hydrogen exchanger YP_001992797.1 4106218 D 395960 CDS YP_001992798.1 192292193 6411502 4107587..4108438 1 NC_011004.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mlo:mll4860 hypothetical protein; cation diffusion facilitator family transporter 4108438 6411502 Rpal_3824 Rhodopseudomonas palustris TIE-1 cation diffusion facilitator family transporter YP_001992798.1 4107587 D 395960 CDS YP_001992799.1 192292194 6411503 4108566..4110968 1 NC_011004.1 TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: xcc:XCC1575 glucose dehydrogenase; membrane-bound PQQ-dependent dehydrogenase 4110968 6411503 Rpal_3825 Rhodopseudomonas palustris TIE-1 membrane-bound PQQ-dependent dehydrogenase YP_001992799.1 4108566 D 395960 CDS YP_001992800.1 192292195 6411504 complement(4110972..4111724) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: jan:Jann_1385 ABC transporter; ABC transporter 4111724 6411504 Rpal_3826 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001992800.1 4110972 R 395960 CDS YP_001992801.1 192292196 6411505 complement(4111721..4112491) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: jan:Jann_1384 ABC transporter; ABC transporter 4112491 6411505 Rpal_3827 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001992801.1 4111721 R 395960 CDS YP_001992802.1 192292197 6411506 complement(4112488..4113708) 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: sit:TM1040_1513 inner-membrane translocator; inner-membrane translocator 4113708 6411506 Rpal_3828 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001992802.1 4112488 R 395960 CDS YP_001992803.1 192292198 6411507 complement(4113713..4114720) 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: sit:TM1040_1512 inner-membrane translocator; inner-membrane translocator 4114720 6411507 Rpal_3829 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001992803.1 4113713 R 395960 CDS YP_001992804.1 192292199 6411508 complement(4114946..4116298) 1 NC_011004.1 KEGG: dsh:Dshi_1404 branched-chain amino acid ABC transporter periplasmic binding protein; branched-chain amino acid ABC transporter periplasmic binding protein 4116298 6411508 Rpal_3830 Rhodopseudomonas palustris TIE-1 branched-chain amino acid ABC transporter periplasmic binding protein YP_001992804.1 4114946 R 395960 CDS YP_001992805.1 192292200 6411509 4116931..4117440 1 NC_011004.1 PFAM: PRC-barrel domain protein; KEGG: atc:AGR_C_3639 hypothetical protein; PRC-barrel domain-containing protein 4117440 6411509 Rpal_3831 Rhodopseudomonas palustris TIE-1 PRC-barrel domain-containing protein YP_001992805.1 4116931 D 395960 CDS YP_001992806.1 192292201 6411510 4117739..4118857 1 NC_011004.1 PFAM: protein of unknown function UPF0118; KEGG: gbe:GbCGDNIH1_0302 hypothetical membrane spanning protein; hypothetical protein 4118857 6411510 Rpal_3832 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992806.1 4117739 D 395960 CDS YP_001992807.1 192292202 6411511 4118842..4119774 1 NC_011004.1 PFAM: ribonuclease BN; KEGG: mrd:Mrad2831_1360 ribonuclease BN; ribonuclease BN 4119774 6411511 Rpal_3833 Rhodopseudomonas palustris TIE-1 ribonuclease BN YP_001992807.1 4118842 D 395960 CDS YP_001992808.1 192292203 6411512 complement(4119931..4120611) 1 NC_011004.1 PFAM: peptidoglycan-binding LysM; KEGG: sen:SACE_2783 aldehyde dehydrogenase (NAD+); peptidoglycan-binding LysM 4120611 6411512 Rpal_3834 Rhodopseudomonas palustris TIE-1 peptidoglycan-binding LysM YP_001992808.1 4119931 R 395960 CDS YP_001992809.1 192292204 6411513 complement(4120774..4120902) 1 NC_011004.1 hypothetical protein 4120902 6411513 Rpal_3835 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992809.1 4120774 R 395960 CDS YP_001992810.1 192292205 6411514 4121170..4123395 1 NC_011004.1 PFAM: glycosyl transferase family 20; KEGG: ppd:Ppro_3271 alpha,alpha-trehalose-phosphate synthase (UDP-forming); alpha,alpha-trehalose-phosphate synthase 4123395 6411514 Rpal_3836 Rhodopseudomonas palustris TIE-1 alpha,alpha-trehalose-phosphate synthase YP_001992810.1 4121170 D 395960 CDS YP_001992811.1 192292206 6411515 complement(4123784..4125382) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll7188 probable ATP-binding protein; ABC transporter 4125382 6411515 Rpal_3837 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001992811.1 4123784 R 395960 CDS YP_001992812.1 192292207 6411516 4125646..4126389 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mms:mma_1860 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 4126389 6411516 Rpal_3838 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001992812.1 4125646 D 395960 CDS YP_001992813.1 192292208 6411517 complement(4126410..4127042) 1 NC_011004.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: azc:AZC_1361 high similarity to two-component response regulator; LuxR family transcriptional regulator 4127042 6411517 Rpal_3839 Rhodopseudomonas palustris TIE-1 LuxR family transcriptional regulator YP_001992813.1 4126410 R 395960 CDS YP_001992814.1 192292209 6411518 complement(4127039..4129318) 1 NC_011004.1 KEGG: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 4129318 6411518 Rpal_3840 Rhodopseudomonas palustris TIE-1 multi-sensor signal transduction histidine kinase YP_001992814.1 4127039 R 395960 CDS YP_001992815.1 192292210 6411519 complement(4129463..4129990) 1 NC_011004.1 KEGG: cytochrome P460; cytochrome P460 4129990 6411519 Rpal_3841 Rhodopseudomonas palustris TIE-1 cytochrome P460 YP_001992815.1 4129463 R 395960 CDS YP_001992816.1 192292211 6411520 complement(4130058..4131101) 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: mrd:Mrad2831_4572 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 4131101 6411520 Rpal_3842 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001992816.1 4130058 R 395960 CDS YP_001992817.1 192292212 6411523 4133799..4134626 1 NC_011004.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: nha:Nham_2508 RNA methyltransferase TrmH, group 3; RNA methyltransferase 4134626 6411523 Rpal_3844 Rhodopseudomonas palustris TIE-1 RNA methyltransferase YP_001992817.1 4133799 D 395960 CDS YP_001992818.1 192292213 6411524 complement(4134699..4135199) 1 NC_011004.1 KEGG: nha:Nham_2509 hypothetical protein; hypothetical protein 4135199 6411524 Rpal_3845 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992818.1 4134699 R 395960 CDS YP_001992819.1 192292214 6411525 complement(4135257..4135730) 1 NC_011004.1 KEGG: nha:Nham_2510 hypothetical protein; hypothetical protein 4135730 6411525 Rpal_3846 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992819.1 4135257 R 395960 CDS YP_001992820.1 192292215 6411527 4137446..4137832 1 NC_011004.1 hypothetical protein 4137832 6411527 Rpal_3847 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992820.1 4137446 D 395960 CDS YP_001992821.1 192292216 6411528 complement(4138041..4138487) 1 NC_011004.1 PFAM: BLUF domain protein; KEGG: mrd:Mrad2831_4411 BLUF domain protein; BLUF domain-containing protein 4138487 6411528 Rpal_3848 Rhodopseudomonas palustris TIE-1 BLUF domain-containing protein YP_001992821.1 4138041 R 395960 CDS YP_001992822.1 192292217 6411529 complement(4138637..4139218) 1 NC_011004.1 KEGG: bja:bll4036 hypothetical protein; hypothetical protein 4139218 6411529 Rpal_3849 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992822.1 4138637 R 395960 CDS YP_001992823.1 192292218 6411530 4139638..4139850 1 NC_011004.1 hypothetical protein 4139850 6411530 Rpal_3850 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992823.1 4139638 D 395960 CDS YP_001992824.1 192292219 6411531 complement(4140229..4140342) 1 NC_011004.1 hypothetical protein 4140342 6411531 Rpal_3851 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992824.1 4140229 R 395960 CDS YP_001992825.1 192292220 6411532 complement(4140500..4140625) 1 NC_011004.1 hypothetical protein 4140625 6411532 Rpal_3852 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992825.1 4140500 R 395960 CDS YP_001992826.1 192292221 6411533 complement(4140809..4141531) 1 NC_011004.1 PFAM: OmpA domain protein transmembrane region-containing protein; porin; KEGG: nha:Nham_1666 OmpA-like transmembrane region; porin 4141531 6411533 Rpal_3853 Rhodopseudomonas palustris TIE-1 porin YP_001992826.1 4140809 R 395960 CDS YP_001992827.1 192292222 6411534 complement(4141711..4142148) 1 NC_011004.1 KEGG: nha:Nham_1665 hypothetical protein; hypothetical protein 4142148 6411534 Rpal_3854 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992827.1 4141711 R 395960 CDS YP_001992828.1 192292223 6411535 complement(4142241..4142537) 1 NC_011004.1 KEGG: dme:Dmel_CG13953 CG13953; hypothetical protein 4142537 6411535 Rpal_3855 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992828.1 4142241 R 395960 CDS YP_001992829.1 192292224 6411536 4142844..4143668 1 NC_011004.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 4143668 ppnK 6411536 ppnK Rhodopseudomonas palustris TIE-1 inorganic polyphosphate/ATP-NAD kinase YP_001992829.1 4142844 D 395960 CDS YP_001992830.1 192292225 6411537 4143765..4146686 1 NC_011004.1 KEGG: sil:SPO1926 hypothetical protein; hypothetical protein 4146686 6411537 Rpal_3857 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992830.1 4143765 D 395960 CDS YP_001992831.1 192292226 6411538 complement(4146844..4147548) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN3288 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 4147548 6411538 Rpal_3858 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001992831.1 4146844 R 395960 CDS YP_001992832.1 192292227 6411539 complement(4147812..4147988) 1 NC_011004.1 hypothetical protein 4147988 6411539 Rpal_3859 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992832.1 4147812 R 395960 CDS YP_001992833.1 192292228 6411540 complement(4148351..4148536) 1 NC_011004.1 hypothetical protein 4148536 6411540 Rpal_3860 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992833.1 4148351 R 395960 CDS YP_001992834.1 192292229 6411541 4148752..4149297 1 NC_011004.1 PFAM: response regulator receiver; KEGG: bja:blr5517 two-component response regulator; response regulator receiver protein 4149297 6411541 Rpal_3861 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001992834.1 4148752 D 395960 CDS YP_001992835.1 192292230 6411542 4149315..4149905 1 NC_011004.1 PFAM: Hpt domain protein; KEGG: bja:blr5518 hypothetical protein; CheA signal transduction histidine kinase 4149905 6411542 Rpal_3862 Rhodopseudomonas palustris TIE-1 CheA signal transduction histidine kinase YP_001992835.1 4149315 D 395960 CDS YP_001992836.1 192292231 6411543 complement(4150192..4151361) 1 NC_011004.1 KEGG: nha:Nham_1660 hypothetical protein; hypothetical protein 4151361 6411543 Rpal_3863 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992836.1 4150192 R 395960 CDS YP_001992837.1 192292232 6411544 4151802..4152587 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: pnu:Pnuc_1186 ABC transporter inner membrane protein; ABC transporter inner membrane protein 4152587 6411544 Rpal_3864 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001992837.1 4151802 D 395960 CDS YP_001992838.1 192292233 6411545 4152623..4153615 1 NC_011004.1 KEGG: pnu:Pnuc_1185 ABC transporter substrate-binding protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein 4153615 6411545 Rpal_3865 Rhodopseudomonas palustris TIE-1 nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein YP_001992838.1 4152623 D 395960 CDS YP_001992839.1 192292234 6411546 4153612..4154448 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_0835 ABC transporter; ABC transporter 4154448 6411546 Rpal_3866 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001992839.1 4153612 D 395960 CDS YP_001992840.1 192292235 6411547 4154509..4156182 1 NC_011004.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: azc:AZC_3883 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4156182 6411547 Rpal_3867 Rhodopseudomonas palustris TIE-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001992840.1 4154509 D 395960 CDS YP_001992841.1 192292236 6411548 4156261..4157208 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_1158 LysR substrate-binding; LysR family transcriptional regulator 4157208 6411548 Rpal_3868 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001992841.1 4156261 D 395960 CDS YP_001992842.1 192292237 6411549 complement(4157215..4158255) 1 NC_011004.1 KEGG: bja:bll5520 hypothetical protein; hypothetical protein 4158255 6411549 Rpal_3869 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992842.1 4157215 R 395960 CDS YP_001992843.1 192292238 6411550 4158452..4159159 1 NC_011004.1 KEGG: dvl:Dvul_1284 hypothetical protein; hypothetical protein 4159159 6411550 Rpal_3870 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992843.1 4158452 D 395960 CDS YP_001992844.1 192292239 6411551 complement(4159169..4159624) 1 NC_011004.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 4159624 hisI 6411551 hisI Rhodopseudomonas palustris TIE-1 phosphoribosyl-AMP cyclohydrolase YP_001992844.1 4159169 R 395960 CDS YP_001992845.1 192292240 6411552 complement(4159653..4160342) 1 NC_011004.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 4160342 folE 6411552 folE Rhodopseudomonas palustris TIE-1 GTP cyclohydrolase I YP_001992845.1 4159653 R 395960 CDS YP_001992846.1 192292241 6411553 4160610..4161062 1 NC_011004.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: bra:BRADO2983 conserved hypothetical protein; NifU-like N-ter domain; nitrogen-fixing NifU domain-containing protein 4161062 6411553 Rpal_3873 Rhodopseudomonas palustris TIE-1 nitrogen-fixing NifU domain-containing protein YP_001992846.1 4160610 D 395960 CDS YP_001992847.1 192292242 6411554 complement(4161217..4162107) 1 NC_011004.1 KEGG: nha:Nham_1655 hypothetical protein; hypothetical protein 4162107 6411554 Rpal_3874 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992847.1 4161217 R 395960 CDS YP_001992848.1 192292243 6411555 4162348..4162737 1 NC_011004.1 PFAM: protein of unknown function DUF37; KEGG: nha:Nham_1654 hypothetical protein; hypothetical protein 4162737 6411555 Rpal_3875 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992848.1 4162348 D 395960 CDS YP_001992849.1 192292244 6411556 complement(4162724..4163497) 1 NC_011004.1 KEGG: bra:BRADO3451 conserved hypothetical protein; signal peptide; hypothetical protein 4163497 6411556 Rpal_3876 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992849.1 4162724 R 395960 CDS YP_001992850.1 192292245 6411557 complement(4163580..4164833) 1 NC_011004.1 PFAM: arsenic pump membrane protein; Citrate transporter; KEGG: bra:BRADO3240 arsenite permease; arsenic pump membrane protein 4164833 6411557 Rpal_3877 Rhodopseudomonas palustris TIE-1 arsenic pump membrane protein YP_001992850.1 4163580 R 395960 CDS YP_001992851.1 192292246 6411558 4165111..4165320 1 NC_011004.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: nha:Nham_2750 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 4165320 6411558 Rpal_3878 Rhodopseudomonas palustris TIE-1 cold-shock DNA-binding domain-containing protein YP_001992851.1 4165111 D 395960 CDS YP_001992852.1 192292247 6411559 4165421..4165669 1 NC_011004.1 KEGG: bra:BRADO0632 hypothetical protein; hypothetical protein 4165669 6411559 Rpal_3879 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992852.1 4165421 D 395960 CDS YP_001992853.1 192292248 6411560 4165713..4165910 1 NC_011004.1 hypothetical protein 4165910 6411560 Rpal_3880 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992853.1 4165713 D 395960 CDS YP_001992854.1 192292249 6411561 complement(4165900..4166322) 1 NC_011004.1 KEGG: cak:Caul_4714 hypothetical protein; hypothetical protein 4166322 6411561 Rpal_3881 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992854.1 4165900 R 395960 CDS YP_001992855.1 192292250 6411562 complement(4166327..4166959) 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: bja:blr4230 transcriptional regulatory protein; TetR family transcriptional regulator 4166959 6411562 Rpal_3882 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001992855.1 4166327 R 395960 CDS YP_001992856.1 192292251 6411563 4167056..4167706 1 NC_011004.1 PFAM: O-methyltransferase family 3; KEGG: bte:BTH_II0913 O-methyltransferase; O-methyltransferase family protein 4167706 6411563 Rpal_3883 Rhodopseudomonas palustris TIE-1 O-methyltransferase family protein YP_001992856.1 4167056 D 395960 CDS YP_001992857.1 192292252 6411564 4167851..4168132 1 NC_011004.1 hypothetical protein 4168132 6411564 Rpal_3884 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992857.1 4167851 D 395960 CDS YP_001992858.1 192292253 6411565 complement(4168068..4169216) 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll5536 major facilitator superfamily transporter; major facilitator superfamily protein 4169216 6411565 Rpal_3885 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001992858.1 4168068 R 395960 CDS YP_001992859.1 192292254 6411566 4169409..4171472 1 NC_011004.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 4171472 thrS 6411566 thrS Rhodopseudomonas palustris TIE-1 threonyl-tRNA synthetase YP_001992859.1 4169409 D 395960 CDS YP_001992860.1 192292255 6411567 complement(4171754..4172332) 1 NC_011004.1 KEGG: cak:Caul_2536 hypothetical protein; hypothetical protein 4172332 6411567 Rpal_3887 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992860.1 4171754 R 395960 CDS YP_001992861.1 192292256 6411568 4172669..4173178 1 NC_011004.1 PFAM: nitroreductase; KEGG: bja:blr5540 hypothetical protein; nitroreductase 4173178 6411568 Rpal_3888 Rhodopseudomonas palustris TIE-1 nitroreductase YP_001992861.1 4172669 D 395960 CDS YP_001992862.1 192292257 6411569 complement(4173230..4175104) 1 NC_011004.1 PFAM: Amidohydrolase 3; KEGG: sit:TM1040_2000 twin-arginine translocation pathway signal; amidohydrolase 4175104 6411569 Rpal_3889 Rhodopseudomonas palustris TIE-1 amidohydrolase YP_001992862.1 4173230 R 395960 CDS YP_001992863.1 192292258 6411570 complement(4175199..4177673) 1 NC_011004.1 KEGG: bja:bll5542 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4177673 6411570 Rpal_3890 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001992863.1 4175199 R 395960 CDS YP_001992864.1 192292259 6411571 complement(4177884..4178945) 1 NC_011004.1 KEGG: nha:Nham_1651 hypothetical protein; hypothetical protein 4178945 6411571 Rpal_3891 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992864.1 4177884 R 395960 CDS YP_001992865.1 192292260 6411572 4179175..4180206 1 NC_011004.1 PFAM: Patatin; KEGG: nha:Nham_1650 patatin; patatin 4180206 6411572 Rpal_3892 Rhodopseudomonas palustris TIE-1 patatin YP_001992865.1 4179175 D 395960 CDS YP_001992866.1 192292261 6411573 complement(4180226..4180441) 1 NC_011004.1 KEGG: bbt:BBta_7044 membrane protein of unknown function; hypothetical protein 4180441 6411573 Rpal_3893 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992866.1 4180226 R 395960 CDS YP_001992867.1 192292262 6411574 complement(4180438..4181553) 1 NC_011004.1 PFAM: PepSY-associated TM helix domain protein; KEGG: bbt:BBta_7043 uncharacterized iron-regulated membrane protein; PepSY-associated TM helix domain-containing protein 4181553 6411574 Rpal_3894 Rhodopseudomonas palustris TIE-1 PepSY-associated TM helix domain-containing protein YP_001992867.1 4180438 R 395960 CDS YP_001992868.1 192292263 6411575 complement(4181582..4183843) 1 NC_011004.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbt:BBta_7042 hydroxamate-type ferrisiderophore receptor; TonB-dependent siderophore receptor 4183843 6411575 Rpal_3895 Rhodopseudomonas palustris TIE-1 TonB-dependent siderophore receptor YP_001992868.1 4181582 R 395960 CDS YP_001992869.1 192292264 6411576 4183993..4184628 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: bbt:BBta_7041 transcriptional regulator, TetR family; TetR family transcriptional regulator 4184628 6411576 Rpal_3896 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001992869.1 4183993 D 395960 CDS YP_001992870.1 192292265 6411577 complement(4184650..4185078) 1 NC_011004.1 PFAM: CBS domain containing protein; KEGG: bja:bll5551 hypothetical protein; hypothetical protein 4185078 6411577 Rpal_3897 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992870.1 4184650 R 395960 CDS YP_001992871.1 192292266 6411578 complement(4185316..4186086) 1 NC_011004.1 PFAM: rhomboid family protein; KEGG: nha:Nham_1648 rhomboid-like protein; rhomboid family protein 4186086 6411578 Rpal_3898 Rhodopseudomonas palustris TIE-1 rhomboid family protein YP_001992871.1 4185316 R 395960 CDS YP_001992872.1 192292267 6411579 4186571..4187140 1 NC_011004.1 PFAM: protein of unknown function DUF1457; KEGG: nha:Nham_1646 hypothetical protein; hypothetical protein 4187140 6411579 Rpal_3899 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992872.1 4186571 D 395960 CDS YP_001992873.1 192292268 6411580 complement(4187110..4187874) 1 NC_011004.1 KEGG: bja:blr0395 hypothetical protein; Crp/Fnr family transcriptional regulator 4187874 6411580 Rpal_3900 Rhodopseudomonas palustris TIE-1 Crp/Fnr family transcriptional regulator YP_001992873.1 4187110 R 395960 CDS YP_001992874.1 192292269 6411581 4188314..4188925 1 NC_011004.1 PFAM: type IV pilus assembly PilZ; KEGG: bja:blr5568 hypothetical protein; type IV pilus assembly PilZ 4188925 6411581 Rpal_3901 Rhodopseudomonas palustris TIE-1 type IV pilus assembly PilZ YP_001992874.1 4188314 D 395960 CDS YP_001992875.1 192292270 6411582 4189257..4189877 1 NC_011004.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: bbt:BBta_5218 exported protein of unknown function; transglutaminase 4189877 6411582 Rpal_3902 Rhodopseudomonas palustris TIE-1 transglutaminase YP_001992875.1 4189257 D 395960 CDS YP_001992876.1 192292271 6411583 complement(4192091..4192369) 1 NC_011004.1 hypothetical protein 4192369 6411583 Rpal_3903 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992876.1 4192091 R 395960 CDS YP_001992877.1 192292272 6411584 complement(4192369..4192626) 1 NC_011004.1 hypothetical protein 4192626 6411584 Rpal_3904 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992877.1 4192369 R 395960 CDS YP_001992878.1 192292273 6411585 complement(4193082..4193204) 1 NC_011004.1 hypothetical protein 4193204 6411585 Rpal_3905 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992878.1 4193082 R 395960 CDS YP_001992879.1 192292274 6411586 4193646..4194314 1 NC_011004.1 KEGG: rru:Rru_A2638 hypothetical protein; hypothetical protein 4194314 6411586 Rpal_3906 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992879.1 4193646 D 395960 CDS YP_001992880.1 192292275 6411587 4194669..4194884 1 NC_011004.1 hypothetical protein 4194884 6411587 Rpal_3907 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992880.1 4194669 D 395960 CDS YP_001992881.1 192292276 6411588 complement(4196255..4196842) 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: bja:blr4984 transcriptional regulatory protein; MarR family transcriptional regulator 4196842 6411588 Rpal_3908 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001992881.1 4196255 R 395960 CDS YP_001992882.1 192292277 6411589 4197367..4198866 1 NC_011004.1 PFAM: porin; KEGG: bbt:BBta_3063 exported protein of unknown function with porin precursor domain; porin 4198866 6411589 Rpal_3909 Rhodopseudomonas palustris TIE-1 porin YP_001992882.1 4197367 D 395960 CDS YP_001992883.1 192292278 6411591 4199302..4199469 1 NC_011004.1 KEGG: bra:BRADO2945 hypothetical protein; hypothetical protein 4199469 6411591 Rpal_3911 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992883.1 4199302 D 395960 CDS YP_001992884.1 192292279 6411592 complement(4199499..4200029) 1 NC_011004.1 KEGG: bbt:BBta_5226 hypothetical protein; hypothetical protein 4200029 6411592 Rpal_3912 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992884.1 4199499 R 395960 CDS YP_001992885.1 192292280 6411593 complement(4200089..4200421) 1 NC_011004.1 KEGG: nha:Nham_2576 hypothetical protein; hypothetical protein 4200421 6411593 Rpal_3913 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992885.1 4200089 R 395960 CDS YP_001992886.1 192292281 6411594 4200588..4201319 1 NC_011004.1 KEGG: bra:BRADO2942 conserved hypothetical protein; exported protein; hypothetical protein 4201319 6411594 Rpal_3914 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992886.1 4200588 D 395960 CDS YP_001992887.1 192292282 6411595 complement(4201336..4201554) 1 NC_011004.1 KEGG: nha:Nham_2578 hypothetical protein; hypothetical protein 4201554 6411595 Rpal_3915 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992887.1 4201336 R 395960 CDS YP_001992888.1 192292283 6411596 complement(4201723..4202550) 1 NC_011004.1 KEGG: bja:bll5586 serine acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein; serine O-acetyltransferase 4202550 6411596 Rpal_3916 Rhodopseudomonas palustris TIE-1 serine O-acetyltransferase YP_001992888.1 4201723 R 395960 CDS YP_001992889.1 192292284 6411597 complement(4202771..4203526) 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: bra:BRADO2938 hydrolase; alpha/beta hydrolase fold protein 4203526 6411597 Rpal_3917 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001992889.1 4202771 R 395960 CDS YP_001992890.1 192292285 6411598 complement(4203696..4204844) 1 NC_011004.1 KEGG: bbt:BBta_5235 exported protein of unknown function; hypothetical protein 4204844 6411598 Rpal_3918 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992890.1 4203696 R 395960 CDS YP_001992891.1 192292286 6411599 4205050..4205295 1 NC_011004.1 KEGG: bja:bsr5590 hypothetical protein; hypothetical protein 4205295 6411599 Rpal_3919 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992891.1 4205050 D 395960 CDS YP_001992892.1 192292287 6411600 4205314..4206507 1 NC_011004.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bja:blr5591 salicylate hydroxylase; FAD-binding monooxygenase 4206507 6411600 Rpal_3920 Rhodopseudomonas palustris TIE-1 FAD-binding monooxygenase YP_001992892.1 4205314 D 395960 CDS YP_001992893.1 192292288 6411601 complement(4206548..4206952) 1 NC_011004.1 KEGG: bra:BRADO2934 conserved hypothetical protein; signal peptide; hypothetical protein 4206952 6411601 Rpal_3921 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992893.1 4206548 R 395960 CDS YP_001992894.1 192292289 6411602 4207116..4207544 1 NC_011004.1 PFAM: UspA domain protein; KEGG: bpt:Bpet2477 universal stress family protein; UspA domain-containing protein 4207544 6411602 Rpal_3922 Rhodopseudomonas palustris TIE-1 UspA domain-containing protein YP_001992894.1 4207116 D 395960 CDS YP_001992895.1 192292290 6411603 4207641..4208501 1 NC_011004.1 PFAM: protein of unknown function DUF23; KEGG: nha:Nham_1056 protein of unknown function DUF23; hypothetical protein 4208501 6411603 Rpal_3923 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992895.1 4207641 D 395960 CDS YP_001992896.1 192292291 6411604 complement(4208560..4209018) 1 NC_011004.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: hha:Hhal_0413 DNA mismatch endonuclease vsr; DNA mismatch endonuclease Vsr 4209018 6411604 Rpal_3924 Rhodopseudomonas palustris TIE-1 DNA mismatch endonuclease Vsr YP_001992896.1 4208560 R 395960 CDS YP_001992897.1 192292292 6411605 complement(4209018..4210763) 1 NC_011004.1 PFAM: protein of unknown function DUF87; KEGG: tpe:Tpen_1572 protein of unknown function DUF87; hypothetical protein 4210763 6411605 Rpal_3925 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992897.1 4209018 R 395960 CDS YP_001992898.1 192292293 6411606 complement(4210777..4212726) 1 NC_011004.1 KEGG: ret:RHE_PF00109 hypothetical protein; hypothetical protein 4212726 6411606 Rpal_3926 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992898.1 4210777 R 395960 CDS YP_001992899.1 192292294 6411607 complement(4212723..4214225) 1 NC_011004.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: ret:RHE_PF00108 probable DNA (cytosine-5-)-methyltransferase protein; DNA-cytosine methyltransferase 4214225 6411607 Rpal_3927 Rhodopseudomonas palustris TIE-1 DNA-cytosine methyltransferase YP_001992899.1 4212723 R 395960 CDS YP_001992900.1 192292295 6411609 4214967..4216154 1 NC_011004.1 KEGG: bbt:BBta_5260 amidohydrolase family protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 4216154 6411609 Rpal_3928 Rhodopseudomonas palustris TIE-1 amidohydrolase YP_001992900.1 4214967 D 395960 CDS YP_001992901.1 192292296 6411610 4216147..4217562 1 NC_011004.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 4217562 6411610 Rpal_3929 Rhodopseudomonas palustris TIE-1 amidase YP_001992901.1 4216147 D 395960 CDS YP_001992902.1 192292297 6411611 4217694..4218584 1 NC_011004.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4218584 6411611 Rpal_3930 Rhodopseudomonas palustris TIE-1 enoyl-CoA hydratase YP_001992902.1 4217694 D 395960 CDS YP_001992903.1 192292298 6411613 complement(4219412..4220401) 1 NC_011004.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bra:BRADO5498 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase 4220401 6411613 Rpal_3932 Rhodopseudomonas palustris TIE-1 fumarylacetoacetate (FAA) hydrolase YP_001992903.1 4219412 R 395960 CDS YP_001992904.1 192292299 6411614 4220529..4221239 1 NC_011004.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bbt:BBta_5982 transcriptional regulatory protein, GntR family; GntR family transcriptional regulator 4221239 6411614 Rpal_3933 Rhodopseudomonas palustris TIE-1 GntR family transcriptional regulator YP_001992904.1 4220529 D 395960 CDS YP_001992905.1 192292300 6411615 complement(4221264..4222985) 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr3958 acetyl-coenzyme A synthetase; AMP-dependent synthetase and ligase 4222985 6411615 Rpal_3934 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001992905.1 4221264 R 395960 CDS YP_001992906.1 192292301 6411616 complement(4223146..4224033) 1 NC_011004.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bbt:BBta_3581 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 4224033 6411616 Rpal_3935 Rhodopseudomonas palustris TIE-1 3-hydroxyisobutyrate dehydrogenase YP_001992906.1 4223146 R 395960 CDS YP_001992907.1 192292302 6411617 complement(4224067..4225140) 1 NC_011004.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; 3-hydroxyisobutyryl-CoA hydrolase 4225140 6411617 Rpal_3936 Rhodopseudomonas palustris TIE-1 3-hydroxyisobutyryl-CoA hydrolase YP_001992907.1 4224067 R 395960 CDS YP_001992908.1 192292303 6411618 complement(4225137..4226294) 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: nha:Nham_2558 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 4226294 6411618 Rpal_3937 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001992908.1 4225137 R 395960 CDS YP_001992909.1 192292304 6411619 complement(4226316..4226711) 1 NC_011004.1 KEGG: xau:Xaut_2191 PilT protein domain protein; PilT protein domain-containing protein 4226711 6411619 Rpal_3938 Rhodopseudomonas palustris TIE-1 PilT protein domain-containing protein YP_001992909.1 4226316 R 395960 CDS YP_001992910.1 192292305 6411620 complement(4226713..4226940) 1 NC_011004.1 KEGG: xau:Xaut_2192 hypothetical protein; hypothetical protein 4226940 6411620 Rpal_3939 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992910.1 4226713 R 395960 CDS YP_001992911.1 192292306 6411621 complement(4226990..4228486) 1 NC_011004.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bra:BRADO3137 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 4228486 6411621 Rpal_3940 Rhodopseudomonas palustris TIE-1 methylmalonate-semialdehyde dehydrogenase YP_001992911.1 4226990 R 395960 CDS YP_001992912.1 192292307 6411622 complement(4228646..4229314) 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: bra:BRADO3136 transcriptional regulator, TetR family; TetR family transcriptional regulator 4229314 6411622 Rpal_3941 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001992912.1 4228646 R 395960 CDS YP_001992913.1 192292308 6411623 complement(4229388..4229963) 1 NC_011004.1 PFAM: thioesterase superfamily protein; KEGG: bja:blr3951 hypothetical protein; thioesterase superfamily protein 4229963 6411623 Rpal_3942 Rhodopseudomonas palustris TIE-1 thioesterase superfamily protein YP_001992913.1 4229388 R 395960 CDS YP_001992914.1 192292309 6411624 4230106..4230876 1 NC_011004.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4230876 6411624 Rpal_3943 Rhodopseudomonas palustris TIE-1 enoyl-CoA hydratase YP_001992914.1 4230106 D 395960 CDS YP_001992915.1 192292310 6411625 4231001..4232287 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: bra:BRADO3133 transmembrane transport protein of the MFS family, monocarboxylate permease; major facilitator superfamily protein 4232287 6411625 Rpal_3944 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001992915.1 4231001 D 395960 CDS YP_001992916.1 192292311 6411626 complement(4232336..4233895) 1 NC_011004.1 PFAM: carboxyl transferase; KEGG: bja:blr3940 propionyl-CoA carboxylase beta chain; propionyl-CoA carboxylase 4233895 6411626 Rpal_3945 Rhodopseudomonas palustris TIE-1 propionyl-CoA carboxylase YP_001992916.1 4232336 R 395960 CDS YP_001992917.1 192292312 6411627 complement(4233804..4234769) 1 NC_011004.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bbt:BBta_3572 transcriptional regulatory protein, IclR family; IclR family transcriptional regulator 4234769 6411627 Rpal_3946 Rhodopseudomonas palustris TIE-1 IclR family transcriptional regulator YP_001992917.1 4233804 R 395960 CDS YP_001992918.1 192292313 6411628 4235049..4235270 1 NC_011004.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: bja:bsl3938 biotinylated protein; biotin/lipoyl attachment domain-containing protein 4235270 6411628 Rpal_3947 Rhodopseudomonas palustris TIE-1 biotin/lipoyl attachment domain-containing protein YP_001992918.1 4235049 D 395960 CDS YP_001992919.1 192292314 6411629 4235454..4236614 1 NC_011004.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bja:bll3937 hypothetical protein; TRAP transporter solute receptor, TAXI family 4236614 6411629 Rpal_3948 Rhodopseudomonas palustris TIE-1 TRAP transporter solute receptor, TAXI family YP_001992919.1 4235454 D 395960 CDS YP_001992920.1 192292315 6411630 4236642..4238708 1 NC_011004.1 TIGRFAM: TRAP transporter 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:bll3936 hypothetical protein; TRAP transporter 4TM/12TM fusion protein 4238708 6411630 Rpal_3949 Rhodopseudomonas palustris TIE-1 TRAP transporter 4TM/12TM fusion protein YP_001992920.1 4236642 D 395960 CDS YP_001992921.1 192292316 6411631 4238829..4239383 1 NC_011004.1 KEGG: nmu:Nmul_A1418 hypothetical protein; hypothetical protein 4239383 6411631 Rpal_3950 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992921.1 4238829 D 395960 CDS YP_001992922.1 192292317 6411632 complement(4239439..4239804) 1 NC_011004.1 KEGG: bja:blr3928 hypothetical protein; hypothetical protein 4239804 6411632 Rpal_3951 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992922.1 4239439 R 395960 CDS YP_001992923.1 192292318 6411633 complement(4239801..4240937) 1 NC_011004.1 KEGG: bbt:BBta_3567 thiolase; thiolase 4240937 6411633 Rpal_3952 Rhodopseudomonas palustris TIE-1 thiolase YP_001992923.1 4239801 R 395960 CDS YP_001992924.1 192292319 6411634 complement(4241119..4242321) 1 NC_011004.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbt:BBta_3565 formyl-CoA transferase; L-carnitine dehydratase/bile acid-inducible protein F 4242321 6411634 Rpal_3953 Rhodopseudomonas palustris TIE-1 L-carnitine dehydratase/bile acid-inducible protein F YP_001992924.1 4241119 R 395960 CDS YP_001992925.1 192292320 6411635 4242529..4243410 1 NC_011004.1 KEGG: sco:SCO4500 dehydratase; dehydratase 4243410 6411635 Rpal_3954 Rhodopseudomonas palustris TIE-1 dehydratase YP_001992925.1 4242529 D 395960 CDS YP_001992926.1 192292321 6411636 complement(4243630..4245156) 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dsh:Dshi_0700 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4245156 6411636 Rpal_3955 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001992926.1 4243630 R 395960 CDS YP_001992927.1 192292322 6411637 complement(4245178..4246347) 1 NC_011004.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 4246347 6411637 Rpal_3956 Rhodopseudomonas palustris TIE-1 acetyl-CoA acetyltransferase YP_001992927.1 4245178 R 395960 CDS YP_001992928.1 192292323 6411638 complement(4246605..4247591) 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bra:BRADO3109 UDP-glucose 4-epimerase; NAD-dependent epimerase/dehydratase 4247591 6411638 Rpal_3957 Rhodopseudomonas palustris TIE-1 NAD-dependent epimerase/dehydratase YP_001992928.1 4246605 R 395960 CDS YP_001992929.1 192292324 6411639 complement(4247768..4248694) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_3556 ABC transporter permease protein; ABC transporter inner membrane protein 4248694 6411639 Rpal_3958 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001992929.1 4247768 R 395960 CDS YP_001992930.1 192292325 6411640 complement(4248687..4249634) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_3555 ABC transporter permease protein; ABC transporter inner membrane protein 4249634 6411640 Rpal_3959 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001992930.1 4248687 R 395960 CDS YP_001992931.1 192292326 6411641 complement(4249865..4251190) 1 NC_011004.1 PFAM: extracellular solute-binding protein family 1; KEGG: bra:BRADO3106 ABC transporter periplasmic-binding protein; family 1 extracellular solute-binding protein 4251190 6411641 Rpal_3960 Rhodopseudomonas palustris TIE-1 family 1 extracellular solute-binding protein YP_001992931.1 4249865 R 395960 CDS YP_001992932.1 192292327 6411642 complement(4251267..4252331) 1 NC_011004.1 PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: bra:BRADO3105 ABC transporter ATP-binding protein; ABC transporter 4252331 6411642 Rpal_3961 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001992932.1 4251267 R 395960 CDS YP_001992933.1 192292328 6411643 4252568..4254376 1 NC_011004.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 4254376 6411643 Rpal_3962 Rhodopseudomonas palustris TIE-1 dihydroxy-acid dehydratase YP_001992933.1 4252568 D 395960 CDS YP_001992934.1 192292329 6411644 4254558..4255292 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO3102 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR 4255292 6411644 Rpal_3963 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001992934.1 4254558 D 395960 CDS YP_001992935.1 192292330 6411645 4255375..4256124 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_3549 3-oxoacyl-acyl carrier protein reductase; short-chain dehydrogenase/reductase SDR 4256124 6411645 Rpal_3964 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001992935.1 4255375 D 395960 CDS YP_001992936.1 192292331 6411646 complement(4256450..4257244) 1 NC_011004.1 TIGRFAM: TonB family protein; KEGG: nha:Nham_1517 TonB-like; TonB family protein 4257244 6411646 Rpal_3965 Rhodopseudomonas palustris TIE-1 TonB family protein YP_001992936.1 4256450 R 395960 CDS YP_001992937.1 192292332 6411647 complement(4257349..4257798) 1 NC_011004.1 TIGRFAM: TonB system transport protein ExbD; PFAM: biopolymer transport protein ExbD/TolR; KEGG: nha:Nham_1516 biopolymer transport protein ExbD/TolR; TonB system transport protein ExbD 4257798 6411647 Rpal_3966 Rhodopseudomonas palustris TIE-1 TonB system transport protein ExbD YP_001992937.1 4257349 R 395960 CDS YP_001992938.1 192292333 6411648 complement(4257802..4258713) 1 NC_011004.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: bja:blr3906 biopolymer transport protein; tonB-system energizer ExbB 4258713 6411648 Rpal_3967 Rhodopseudomonas palustris TIE-1 tonB-system energizer ExbB YP_001992938.1 4257802 R 395960 CDS YP_001992939.1 192292334 6411649 complement(4258710..4259399) 1 NC_011004.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: bja:blr3905 hydroxylase; hydroxylase 4259399 6411649 Rpal_3968 Rhodopseudomonas palustris TIE-1 hydroxylase YP_001992939.1 4258710 R 395960 CDS YP_001992940.1 192292335 6411650 complement(4259425..4261806) 1 NC_011004.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_1513 TonB-dependent receptor; TonB-dependent siderophore receptor 4261806 6411650 Rpal_3969 Rhodopseudomonas palustris TIE-1 TonB-dependent siderophore receptor YP_001992940.1 4259425 R 395960 CDS YP_001992941.1 192292336 6411651 complement(4262090..4262332) 1 NC_011004.1 KEGG: bbt:BBta_3539 hypothetical protein; hypothetical protein 4262332 6411651 Rpal_3970 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992941.1 4262090 R 395960 CDS YP_001992942.1 192292337 6411652 4262669..4263892 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: nha:Nham_1510 secretion protein HlyD; RND family efflux transporter MFP subunit 4263892 6411652 Rpal_3971 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001992942.1 4262669 D 395960 CDS YP_001992943.1 192292338 6411653 4263895..4267032 1 NC_011004.1 PFAM: acriflavin resistance protein; KEGG: nha:Nham_1509 acriflavin resistance protein; acriflavin resistance protein 4267032 6411653 Rpal_3972 Rhodopseudomonas palustris TIE-1 acriflavin resistance protein YP_001992943.1 4263895 D 395960 CDS YP_001992944.1 192292339 6411654 complement(4267075..4267479) 1 NC_011004.1 PFAM: PilT protein domain protein; KEGG: rso:RSc3055 hypothetical protein; PilT protein domain-containing protein 4267479 6411654 Rpal_3973 Rhodopseudomonas palustris TIE-1 PilT protein domain-containing protein YP_001992944.1 4267075 R 395960 CDS YP_001992945.1 192292340 6411655 complement(4267476..4267730) 1 NC_011004.1 PFAM: SpoVT/AbrB domain protein; KEGG: nmu:Nmul_A0985 transcriptional regulator/antitoxin, MazE; MazE family transcriptional regulator 4267730 6411655 Rpal_3974 Rhodopseudomonas palustris TIE-1 MazE family transcriptional regulator YP_001992945.1 4267476 R 395960 CDS YP_001992946.1 192292341 6411657 4268318..4269514 1 NC_011004.1 TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: nha:Nham_2492 phage portal protein, HK97; phage portal protein, HK97 family 4269514 6411657 Rpal_3975 Rhodopseudomonas palustris TIE-1 phage portal protein, HK97 family YP_001992946.1 4268318 D 395960 CDS YP_001992947.1 192292342 6411658 4269511..4270215 1 NC_011004.1 KEGG: rso:RSc1696 probable phage HK022 GP20-related protein; phage HK022 GP20-like protein 4270215 6411658 Rpal_3976 Rhodopseudomonas palustris TIE-1 phage HK022 GP20-like protein YP_001992947.1 4269511 D 395960 CDS YP_001992948.1 192292343 6411659 4270215..4270541 1 NC_011004.1 KEGG: nha:Nham_2491 hypothetical protein; hypothetical protein 4270541 6411659 Rpal_3977 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992948.1 4270215 D 395960 CDS YP_001992949.1 192292344 6411660 4270538..4270735 1 NC_011004.1 hypothetical protein 4270735 6411660 Rpal_3978 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992949.1 4270538 D 395960 CDS YP_001992950.1 192292345 6411661 4270735..4271232 1 NC_011004.1 TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: nha:Nham_2490 peptidase U35, phage prohead HK97; phage prohead protease, HK97 family 4271232 6411661 Rpal_3979 Rhodopseudomonas palustris TIE-1 phage prohead protease, HK97 family YP_001992950.1 4270735 D 395960 CDS YP_001992951.1 192292346 6411662 4271235..4272383 1 NC_011004.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: rsp:RSP_2358 possible phage phi-C31 GP36-like protein / major capsid protein, HK97 family; phage major capsid protein, HK97 family 4272383 6411662 Rpal_3980 Rhodopseudomonas palustris TIE-1 phage major capsid protein, HK97 family YP_001992951.1 4271235 D 395960 CDS YP_001992952.1 192292347 6411663 4272389..4272958 1 NC_011004.1 KEGG: nha:Nham_2487 hypothetical protein; hypothetical protein 4272958 6411663 Rpal_3981 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992952.1 4272389 D 395960 CDS YP_001992953.1 192292348 6411664 4272949..4273296 1 NC_011004.1 PFAM: HNH endonuclease; KEGG: nwi:Nwi_1480 HNH endonuclease; HNH endonuclease 4273296 6411664 Rpal_3982 Rhodopseudomonas palustris TIE-1 HNH endonuclease YP_001992953.1 4272949 D 395960 CDS YP_001992954.1 192292349 6411665 4273298..4273720 1 NC_011004.1 KEGG: nha:Nham_2485 hypothetical protein; hypothetical protein 4273720 6411665 Rpal_3983 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992954.1 4273298 D 395960 CDS YP_001992955.1 192292350 6411666 4273735..4274016 1 NC_011004.1 TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: nha:Nham_2484 uncharacterized phage protein; hypothetical protein 4274016 6411666 Rpal_3984 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992955.1 4273735 D 395960 CDS YP_001992956.1 192292351 6411667 4274018..4274434 1 NC_011004.1 KEGG: nha:Nham_2483 hypothetical protein; hypothetical protein 4274434 6411667 Rpal_3985 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992956.1 4274018 D 395960 CDS YP_001992957.1 192292352 6411668 4274434..4274754 1 NC_011004.1 TIGRFAM: phage head-tail adaptor; KEGG: nha:Nham_2482 hypothetical protein; phage head-tail adaptor 4274754 6411668 Rpal_3986 Rhodopseudomonas palustris TIE-1 phage head-tail adaptor YP_001992957.1 4274434 D 395960 CDS YP_001992958.1 192292353 6411669 4274733..4275137 1 NC_011004.1 hypothetical protein 4275137 6411669 Rpal_3987 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992958.1 4274733 D 395960 CDS YP_001992959.1 192292354 6411670 4275134..4275511 1 NC_011004.1 TIGRFAM: phage terminase, small subunit, , P27 family; PFAM: terminase small subunit P27; KEGG: nwi:Nwi_1617 phage terminase, small subunit, , P27; phage terminase, small subunit, , P27 family 4275511 6411670 Rpal_3988 Rhodopseudomonas palustris TIE-1 phage terminase, small subunit, , P27 family YP_001992959.1 4275134 D 395960 CDS YP_001992960.1 192292355 6411671 4275486..4277108 1 NC_011004.1 PFAM: Terminase; KEGG: nha:Nham_1726 phage terminase; terminase 4277108 6411671 Rpal_3989 Rhodopseudomonas palustris TIE-1 terminase YP_001992960.1 4275486 D 395960 CDS YP_001992961.1 192292356 6411672 4277108..4277503 1 NC_011004.1 TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: nha:Nham_2479 phage protein, HK97, GP10; phage protein, HK97 gp10 family 4277503 6411672 Rpal_3990 Rhodopseudomonas palustris TIE-1 phage protein, HK97 gp10 family YP_001992961.1 4277108 D 395960 CDS YP_001992962.1 192292357 6411673 4277500..4277832 1 NC_011004.1 KEGG: nha:Nham_2478 hypothetical protein; hypothetical protein 4277832 6411673 Rpal_3991 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992962.1 4277500 D 395960 CDS YP_001992963.1 192292358 6411674 4277832..4280048 1 NC_011004.1 KEGG: nha:Nham_2477 hypothetical protein; hypothetical protein 4280048 6411674 Rpal_3992 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992963.1 4277832 D 395960 CDS YP_001992964.1 192292359 6411675 4280153..4281001 1 NC_011004.1 KEGG: nha:Nham_2138 hypothetical protein; hypothetical protein 4281001 6411675 Rpal_3993 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992964.1 4280153 D 395960 CDS YP_001992965.1 192292360 6411676 4281200..4281391 1 NC_011004.1 hypothetical protein 4281391 6411676 Rpal_3994 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992965.1 4281200 D 395960 CDS YP_001992966.1 192292361 6411677 4281607..4282083 1 NC_011004.1 hypothetical protein 4282083 6411677 Rpal_3995 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992966.1 4281607 D 395960 CDS YP_001992967.1 192292362 6411678 complement(4282672..4283451) 1 NC_011004.1 KEGG: cdi:DIP0856 serine protease; hypothetical protein 4283451 6411678 Rpal_3996 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992967.1 4282672 R 395960 CDS YP_001992968.1 192292363 6411679 complement(4283460..4285205) 1 NC_011004.1 PFAM: integrase family protein; KEGG: nha:Nham_2130 phage integrase; integrase family protein 4285205 6411679 Rpal_3997 Rhodopseudomonas palustris TIE-1 integrase family protein YP_001992968.1 4283460 R 395960 CDS YP_001992969.1 192292364 6411680 4285428..4285559 1 NC_011004.1 hypothetical protein 4285559 6411680 Rpal_3998 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992969.1 4285428 D 395960 CDS YP_001992970.1 192292365 6411681 complement(4285569..4286762) 1 NC_011004.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_3863 formyl-CoA transferase; L-carnitine dehydratase/bile acid-inducible protein F 4286762 6411681 Rpal_3999 Rhodopseudomonas palustris TIE-1 L-carnitine dehydratase/bile acid-inducible protein F YP_001992970.1 4285569 R 395960 CDS YP_001992971.1 192292366 6411682 complement(4286872..4288083) 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: bja:blr7827 ABC transporter substrate-binding protein; extracellular ligand-binding receptor 4288083 6411682 Rpal_4000 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001992971.1 4286872 R 395960 CDS YP_001992972.1 192292367 6411683 complement(4288317..4288931) 1 NC_011004.1 PFAM: protein of unknown function DUF548; KEGG: oan:Oant_1046 protein of unknown function DUF548; hypothetical protein 4288931 6411683 Rpal_4001 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992972.1 4288317 R 395960 CDS YP_001992973.1 192292368 6411684 complement(4288937..4290442) 1 NC_011004.1 KEGG: nha:Nham_2725 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 4290442 6411684 Rpal_4002 Rhodopseudomonas palustris TIE-1 protease Do YP_001992973.1 4288937 R 395960 CDS YP_001992974.1 192292369 6411685 complement(4290657..4290857) 1 NC_011004.1 KEGG: bja:bsl6507 hypothetical protein; hypothetical protein 4290857 6411685 Rpal_4003 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992974.1 4290657 R 395960 CDS YP_001992975.1 192292370 6411686 complement(4291100..4292026) 1 NC_011004.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: nwi:Nwi_2348 HflC; HflC protein 4292026 6411686 Rpal_4004 Rhodopseudomonas palustris TIE-1 HflC protein YP_001992975.1 4291100 R 395960 CDS YP_001992976.1 192292371 6411687 complement(4292023..4293174) 1 NC_011004.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: nwi:Nwi_2349 HflK; HflK protein 4293174 6411687 Rpal_4005 Rhodopseudomonas palustris TIE-1 HflK protein YP_001992976.1 4292023 R 395960 CDS YP_001992977.1 192292372 6411688 complement(4293319..4293861) 1 NC_011004.1 PFAM: dihydrofolate reductase region; KEGG: bbt:BBta_6098 dihydrofolate reductase; Dihydrofolate reductase 4293861 6411688 Rpal_4006 Rhodopseudomonas palustris TIE-1 Dihydrofolate reductase YP_001992977.1 4293319 R 395960 CDS YP_001992978.1 192292373 6411689 complement(4293858..4294652) 1 NC_011004.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 4294652 thyA 6411689 thyA Rhodopseudomonas palustris TIE-1 thymidylate synthase YP_001992978.1 4293858 R 395960 CDS YP_001992979.1 192292374 6411690 complement(4294825..4295832) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bja:bll6513 hypothetical protein; hypothetical protein 4295832 6411690 Rpal_4008 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992979.1 4294825 R 395960 CDS YP_001992980.1 192292375 6411691 complement(4295934..4297448) 1 NC_011004.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: bja:bll6514 hypothetical protein; hypothetical protein 4297448 6411691 Rpal_4009 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992980.1 4295934 R 395960 CDS YP_001992981.1 192292376 6411692 complement(4297459..4297959) 1 NC_011004.1 PFAM: protein of unknown function DUF1468; KEGG: bra:BRADO5580 hypothetical protein; hypothetical protein 4297959 6411692 Rpal_4010 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992981.1 4297459 R 395960 CDS YP_001992982.1 192292377 6411693 complement(4298032..4298562) 1 NC_011004.1 PFAM: Chromate transporter; KEGG: bja:bll6516 transmembrane protein; chromate transporter 4298562 6411693 Rpal_4011 Rhodopseudomonas palustris TIE-1 chromate transporter YP_001992982.1 4298032 R 395960 CDS YP_001992983.1 192292378 6411694 complement(4298559..4299155) 1 NC_011004.1 PFAM: Chromate transporter; KEGG: bra:BRADO5582 chromate transport protein (ChrA-like); chromate transporter 4299155 6411694 Rpal_4012 Rhodopseudomonas palustris TIE-1 chromate transporter YP_001992983.1 4298559 R 395960 CDS YP_001992984.1 192292379 6411696 4299883..4300419 1 NC_011004.1 PFAM: protein of unknown function DUF1321; KEGG: bbt:BBta_6105 hypothetical protein; hypothetical protein 4300419 6411696 Rpal_4013 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992984.1 4299883 D 395960 CDS YP_001992985.1 192292380 6411697 4300530..4301957 1 NC_011004.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 4301957 fumC 6411697 fumC Rhodopseudomonas palustris TIE-1 fumarate hydratase YP_001992985.1 4300530 D 395960 CDS YP_001992986.1 192292381 6411698 4302222..4302410 1 NC_011004.1 KEGG: bbt:BBta_6107 hypothetical protein; hypothetical protein 4302410 6411698 Rpal_4015 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992986.1 4302222 D 395960 CDS YP_001992987.1 192292382 6411699 4302407..4302685 1 NC_011004.1 KEGG: nha:Nham_2734 hypothetical protein; hypothetical protein 4302685 6411699 Rpal_4016 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992987.1 4302407 D 395960 CDS YP_001992988.1 192292383 6411700 complement(4302706..4306530) 1 NC_011004.1 PFAM: AsmA family protein; KEGG: bja:bll6536 hypothetical protein; AsmA family protein 4306530 6411700 Rpal_4017 Rhodopseudomonas palustris TIE-1 AsmA family protein YP_001992988.1 4302706 R 395960 CDS YP_001992989.1 192292384 6411701 complement(4306666..4308093) 1 NC_011004.1 PFAM: FAD linked oxidase domain protein; KEGG: bja:bll6558 oxidoreductase; FAD linked oxidase domain-containing protein 4308093 6411701 Rpal_4018 Rhodopseudomonas palustris TIE-1 FAD linked oxidase domain-containing protein YP_001992989.1 4306666 R 395960 CDS YP_001992990.1 192292385 6411702 4308160..4308693 1 NC_011004.1 KEGG: bra:BRADO5610 conserved hypothetical protein; thioesterase superfamily; hypothetical protein 4308693 6411702 Rpal_4019 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992990.1 4308160 D 395960 CDS YP_001992991.1 192292386 6411703 complement(4308690..4308863) 1 NC_011004.1 PFAM: protein of unknown function DUF1328; KEGG: bbt:BBta_6140 membrane protein of unknown function; hypothetical protein 4308863 6411703 Rpal_4020 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992991.1 4308690 R 395960 CDS YP_001992992.1 192292387 6411704 4309177..4311723 1 NC_011004.1 PFAM: UvrD/REP helicase; KEGG: nha:Nham_2739 UvrD/REP helicase; UvrD/REP helicase 4311723 6411704 Rpal_4021 Rhodopseudomonas palustris TIE-1 UvrD/REP helicase YP_001992992.1 4309177 D 395960 CDS YP_001992993.1 192292388 6411705 4311723..4312007 1 NC_011004.1 PFAM: protein of unknown function UPF0150; KEGG: nha:Nham_0567 protein of unknown function UPF0150; hypothetical protein 4312007 6411705 Rpal_4022 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992993.1 4311723 D 395960 CDS YP_001992994.1 192292389 6411706 4312791..4313072 1 NC_011004.1 PFAM: protein of unknown function UPF0150; KEGG: ccr:CC_3185 DNA-binding protein, CopG family; hypothetical protein 4313072 6411706 Rpal_4023 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992994.1 4312791 D 395960 CDS YP_001992995.1 192292390 6411707 4313367..4314287 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2740 ABC transporter; ABC transporter 4314287 6411707 Rpal_4024 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001992995.1 4313367 D 395960 CDS YP_001992996.1 192292391 6411708 4314290..4315051 1 NC_011004.1 PFAM: ABC transporter; KEGG: bja:blr6578 ABC transporter permease protein; ABC transporter 4315051 6411708 Rpal_4025 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001992996.1 4314290 D 395960 CDS YP_001992997.1 192292392 6411709 complement(4315122..4315469) 1 NC_011004.1 KEGG: nwi:Nwi_2363 hypothetical protein; hypothetical protein 4315469 6411709 Rpal_4026 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992997.1 4315122 R 395960 CDS YP_001992998.1 192292393 6411710 4315720..4316502 1 NC_011004.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: nha:Nham_2743 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 4316502 6411710 Rpal_4027 Rhodopseudomonas palustris TIE-1 ErfK/YbiS/YcfS/YnhG family protein YP_001992998.1 4315720 D 395960 CDS YP_001992999.1 192292394 6411711 complement(4316565..4318844) 1 NC_011004.1 KEGG: bra:BRADO5641 hypothetical protein; hypothetical protein 4318844 6411711 Rpal_4028 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001992999.1 4316565 R 395960 CDS YP_001993000.1 192292395 6411712 4319005..4320615 1 NC_011004.1 PFAM: FAD dependent oxidoreductase; KEGG: nha:Nham_2744 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4320615 6411712 Rpal_4029 Rhodopseudomonas palustris TIE-1 FAD dependent oxidoreductase YP_001993000.1 4319005 D 395960 CDS YP_001993001.1 192292396 6411713 complement(4320685..4320987) 1 NC_011004.1 hypothetical protein 4320987 6411713 Rpal_4030 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993001.1 4320685 R 395960 CDS YP_001993002.1 192292397 6411714 4321431..4322321 1 NC_011004.1 PFAM: RNA methylase; methyltransferase small; ribosomal L11 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: bja:blr6588 ribosomal protein L11 methyltransferase; ribosomal L11 methyltransferase 4322321 6411714 Rpal_4031 Rhodopseudomonas palustris TIE-1 ribosomal L11 methyltransferase YP_001993002.1 4321431 D 395960 CDS YP_001993003.1 192292398 6411715 complement(4322346..4322540) 1 NC_011004.1 hypothetical protein 4322540 6411715 Rpal_4032 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993003.1 4322346 R 395960 CDS YP_001993004.1 192292399 6411716 4322736..4324565 1 NC_011004.1 PFAM: creatinase; peptidase M24; KEGG: bbt:BBta_6160 aminopeptidase P; peptidase M24 4324565 6411716 Rpal_4033 Rhodopseudomonas palustris TIE-1 peptidase M24 YP_001993004.1 4322736 D 395960 CDS YP_001993005.1 192292400 6411717 4324939..4326225 1 NC_011004.1 TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr6590 major facilitator superfamily transporter; Bcr/CflA subfamily drug resistance transporter 4326225 6411717 Rpal_4034 Rhodopseudomonas palustris TIE-1 Bcr/CflA subfamily drug resistance transporter YP_001993005.1 4324939 D 395960 CDS YP_001993006.1 192292401 6411718 complement(4326362..4328509) 1 NC_011004.1 KEGG: nha:Nham_1290 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase; NAD-dependent DNA ligase 4328509 6411718 Rpal_4035 Rhodopseudomonas palustris TIE-1 NAD-dependent DNA ligase YP_001993006.1 4326362 R 395960 CDS YP_001993007.1 192292402 6411719 4328704..4328943 1 NC_011004.1 KEGG: bja:bsr6592 hypothetical protein; hypothetical protein 4328943 6411719 Rpal_4036 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993007.1 4328704 D 395960 CDS YP_001993008.1 192292403 6411720 complement(4329098..4330786) 1 NC_011004.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: nha:Nham_1289 DNA repair protein RecN; DNA repair protein RecN 4330786 6411720 Rpal_4037 Rhodopseudomonas palustris TIE-1 DNA repair protein RecN YP_001993008.1 4329098 R 395960 CDS YP_001993009.1 192292404 6411721 complement(4330799..4331707) 1 NC_011004.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: bbt:BBta_6164 hypothetical protein; outer membrane assembly lipoprotein YfiO 4331707 6411721 Rpal_4038 Rhodopseudomonas palustris TIE-1 outer membrane assembly lipoprotein YfiO YP_001993009.1 4330799 R 395960 CDS YP_001993010.1 192292405 6411722 complement(4331934..4332896) 1 NC_011004.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 4332896 lpxC 6411722 lpxC Rhodopseudomonas palustris TIE-1 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_001993010.1 4331934 R 395960 CDS YP_001993011.1 192292406 6411723 complement(4333243..4335018) 1 NC_011004.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 4335018 6411723 Rpal_4040 Rhodopseudomonas palustris TIE-1 cell division protein FtsZ YP_001993011.1 4333243 R 395960 CDS YP_001993012.1 192292407 6411724 complement(4335112..4336434) 1 NC_011004.1 PFAM: cell division protein FtsA; KEGG: bra:BRADO5654 cell division protein with ATPase domain, involved in recruitment of FtsK to Z ring; cell division protein FtsA 4336434 6411724 Rpal_4041 Rhodopseudomonas palustris TIE-1 cell division protein FtsA YP_001993012.1 4335112 R 395960 CDS YP_001993013.1 192292408 6411725 complement(4336431..4337420) 1 NC_011004.1 PFAM: cell division protein FtsQ; polypeptide-transport-associated domain protein FtsQ-type; KEGG: bra:BRADO5655 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein 4337420 6411725 Rpal_4042 Rhodopseudomonas palustris TIE-1 polypeptide-transport-associated domain-containing protein YP_001993013.1 4336431 R 395960 CDS YP_001993014.1 192292409 6411726 complement(4337739..4338728) 1 NC_011004.1 PFAM: protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; KEGG: nwi:Nwi_1055 D-alanine--D-alanine ligase; D-alanine--D-alanine ligase 4338728 6411726 Rpal_4043 Rhodopseudomonas palustris TIE-1 D-alanine--D-alanine ligase YP_001993014.1 4337739 R 395960 CDS YP_001993015.1 192292410 6411727 complement(4338838..4340166) 1 NC_011004.1 KEGG: nha:Nham_2630 hypothetical protein; hypothetical protein 4340166 6411727 Rpal_4044 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993015.1 4338838 R 395960 CDS YP_001993016.1 192292411 6411728 4340396..4341217 1 NC_011004.1 KEGG: mex:Mext_0655 hypothetical protein; hypothetical protein 4341217 6411728 Rpal_4045 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993016.1 4340396 D 395960 CDS YP_001993017.1 192292412 6411729 complement(4341275..4342204) 1 NC_011004.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4342204 murB 6411729 murB Rhodopseudomonas palustris TIE-1 UDP-N-acetylenolpyruvoylglucosamine reductase YP_001993017.1 4341275 R 395960 CDS YP_001993018.1 192292413 6411730 complement(4342290..4343693) 1 NC_011004.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 4343693 murC 6411730 murC Rhodopseudomonas palustris TIE-1 UDP-N-acetylmuramate--L-alanine ligase YP_001993018.1 4342290 R 395960 CDS YP_001993019.1 192292414 6411731 complement(4343830..4344930) 1 NC_011004.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 4344930 murG 6411731 murG Rhodopseudomonas palustris TIE-1 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001993019.1 4343830 R 395960 CDS YP_001993020.1 192292415 6411732 complement(4344935..4346077) 1 NC_011004.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: bja:bll6603 cell division protein; cell division protein FtsW 4346077 6411732 Rpal_4049 Rhodopseudomonas palustris TIE-1 cell division protein FtsW YP_001993020.1 4344935 R 395960 CDS YP_001993021.1 192292416 6411733 complement(4346223..4347632) 1 NC_011004.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 4347632 murD 6411733 murD Rhodopseudomonas palustris TIE-1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001993021.1 4346223 R 395960 CDS YP_001993022.1 192292417 6411734 complement(4347820..4348905) 1 NC_011004.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 4348905 mraY 6411734 mraY Rhodopseudomonas palustris TIE-1 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001993022.1 4347820 R 395960 CDS YP_001993023.1 192292418 6411735 complement(4348916..4350355) 1 NC_011004.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: nha:Nham_1275 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase 4350355 6411735 Rpal_4052 Rhodopseudomonas palustris TIE-1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase YP_001993023.1 4348916 R 395960 CDS YP_001993024.1 192292419 6411736 complement(4350352..4351809) 1 NC_011004.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 4351809 murE 6411736 murE Rhodopseudomonas palustris TIE-1 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001993024.1 4350352 R 395960 CDS YP_001993025.1 192292420 6411737 complement(4351922..4353676) 1 NC_011004.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: nha:Nham_1273 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 4353676 6411737 Rpal_4054 Rhodopseudomonas palustris TIE-1 peptidoglycan glycosyltransferase YP_001993025.1 4351922 R 395960 CDS YP_001993026.1 192292421 6411738 complement(4353673..4354056) 1 NC_011004.1 KEGG: nwi:Nwi_1044 hypothetical protein; hypothetical protein 4354056 6411738 Rpal_4055 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993026.1 4353673 R 395960 CDS YP_001993027.1 192292422 6411739 complement(4354053..4355051) 1 NC_011004.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: bbt:BBta_6182 S-adenosyl-dependent methyl transferase; S-adenosyl-methyltransferase MraW 4355051 mraW 6411739 mraW Rhodopseudomonas palustris TIE-1 S-adenosyl-methyltransferase MraW YP_001993027.1 4354053 R 395960 CDS YP_001993028.1 192292423 6411740 4355550..4356416 1 NC_011004.1 PFAM: peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: bja:blr6611 amidase; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 4356416 6411740 Rpal_4057 Rhodopseudomonas palustris TIE-1 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_001993028.1 4355550 D 395960 CDS YP_001993029.1 192292424 6411742 complement(4356988..4357557) 1 NC_011004.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: pla:Plav_0312 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 4357557 6411742 Rpal_4058 Rhodopseudomonas palustris TIE-1 filamentation induced by cAMP protein fic YP_001993029.1 4356988 R 395960 CDS YP_001993030.1 192292425 6411743 complement(4357559..4357759) 1 NC_011004.1 hypothetical protein 4357759 6411743 Rpal_4059 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993030.1 4357559 R 395960 CDS YP_001993031.1 192292426 6411744 complement(4357808..4359400) 1 NC_011004.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_6187 multidrug resistance protein B; EmrB/QacA subfamily drug resistance transporter 4359400 6411744 Rpal_4060 Rhodopseudomonas palustris TIE-1 EmrB/QacA subfamily drug resistance transporter YP_001993031.1 4357808 R 395960 CDS YP_001993032.1 192292427 6411745 complement(4359551..4360819) 1 NC_011004.1 PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_6188 multidrug resistance protein A; secretion protein HlyD family protein 4360819 6411745 Rpal_4061 Rhodopseudomonas palustris TIE-1 secretion protein HlyD family protein YP_001993032.1 4359551 R 395960 CDS YP_001993033.1 192292428 6411746 4361000..4361650 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: bja:blr6623 transcriptional regulatory protein; TetR family transcriptional regulator 4361650 6411746 Rpal_4062 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001993033.1 4361000 D 395960 CDS YP_001993034.1 192292429 6411747 complement(4361662..4362903) 1 NC_011004.1 PFAM: Extensin family protein; KEGG: bja:bll6625 hypothetical protein; extensin family protein 4362903 6411747 Rpal_4063 Rhodopseudomonas palustris TIE-1 extensin family protein YP_001993034.1 4361662 R 395960 CDS YP_001993035.1 192292430 6411748 complement(4363027..4364982) 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bra:BRADO0729 methyl-accepting chemotaxis protein (chemoreceptor); methyl-accepting chemotaxis sensory transducer 4364982 6411748 Rpal_4064 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001993035.1 4363027 R 395960 CDS YP_001993036.1 192292431 6411749 4365176..4365415 1 NC_011004.1 hypothetical protein 4365415 6411749 Rpal_4065 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993036.1 4365176 D 395960 CDS YP_001993037.1 192292432 6411750 complement(4365448..4368693) 1 NC_011004.1 TIGRFAM: polymorphic outer membrane protein; outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: nha:Nham_3087 outer membrane autotransporter barrel; outer membrane autotransporter barrel domain-containing protein 4368693 6411750 Rpal_4066 Rhodopseudomonas palustris TIE-1 outer membrane autotransporter barrel domain-containing protein YP_001993037.1 4365448 R 395960 CDS YP_001993038.1 192292433 6411751 4368871..4369509 1 NC_011004.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:bll0962 phosphoglycolate phosphatase; HAD-superfamily hydrolase 4369509 6411751 Rpal_4067 Rhodopseudomonas palustris TIE-1 HAD-superfamily hydrolase YP_001993038.1 4368871 D 395960 CDS YP_001993039.1 192292434 6411752 4369742..4371643 1 NC_011004.1 PFAM: cobalamin B12-binding domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dol:Dole_1742 radical SAM domain protein; radical SAM domain-containing protein 4371643 6411752 Rpal_4068 Rhodopseudomonas palustris TIE-1 radical SAM domain-containing protein YP_001993039.1 4369742 D 395960 CDS YP_001993040.1 192292435 6411753 4371640..4372359 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dge:Dgeo_0818 short chain dehydrogenase; short chain dehydrogenase 4372359 6411753 Rpal_4069 Rhodopseudomonas palustris TIE-1 short chain dehydrogenase YP_001993040.1 4371640 D 395960 CDS YP_001993041.1 192292436 6411754 4372356..4373183 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xau:Xaut_1138 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4373183 6411754 Rpal_4070 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001993041.1 4372356 D 395960 CDS YP_001993042.1 192292437 6411755 complement(4373195..4374247) 1 NC_011004.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: mes:Meso_0323 bile acid:sodium symporter; arsenical-resistance protein 4374247 6411755 Rpal_4071 Rhodopseudomonas palustris TIE-1 arsenical-resistance protein YP_001993042.1 4373195 R 395960 CDS YP_001993043.1 192292438 6411756 complement(4374374..4374799) 1 NC_011004.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: oan:Oant_3199 arsenate reductase; arsenate reductase 4374799 6411756 Rpal_4072 Rhodopseudomonas palustris TIE-1 arsenate reductase YP_001993043.1 4374374 R 395960 CDS YP_001993044.1 192292439 6411757 complement(4374799..4375326) 1 NC_011004.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: xau:Xaut_0875 protein tyrosine phosphatase; protein tyrosine phosphatase 4375326 6411757 Rpal_4073 Rhodopseudomonas palustris TIE-1 protein tyrosine phosphatase YP_001993044.1 4374799 R 395960 CDS YP_001993045.1 192292440 6411758 complement(4375319..4375675) 1 NC_011004.1 PFAM: regulatory protein ArsR; KEGG: bja:bll3087 transcriptional regulatory protein; ArsR family transcriptional regulator 4375675 6411758 Rpal_4074 Rhodopseudomonas palustris TIE-1 ArsR family transcriptional regulator YP_001993045.1 4375319 R 395960 CDS YP_001993046.1 192292441 6411759 complement(4375730..4375966) 1 NC_011004.1 KEGG: xau:Xaut_3943 thiol-disulfide isomerase and thioredoxin; thiol-disulfide isomerase and thioredoxin 4375966 6411759 Rpal_4075 Rhodopseudomonas palustris TIE-1 thiol-disulfide isomerase and thioredoxin YP_001993046.1 4375730 R 395960 CDS YP_001993047.1 192292442 6411760 complement(4375978..4377027) 1 NC_011004.1 PFAM: permease; KEGG: xau:Xaut_3419 permease; permease 4377027 6411760 Rpal_4076 Rhodopseudomonas palustris TIE-1 permease YP_001993047.1 4375978 R 395960 CDS YP_001993048.1 192292443 6411761 complement(4377024..4377323) 1 NC_011004.1 PFAM: regulatory protein ArsR; KEGG: xau:Xaut_3418 regulatory protein ArsR; ArsR family transcriptional regulator 4377323 6411761 Rpal_4077 Rhodopseudomonas palustris TIE-1 ArsR family transcriptional regulator YP_001993048.1 4377024 R 395960 CDS YP_001993049.1 192292444 6411762 4377489..4378274 1 NC_011004.1 PFAM: protein of unknown function DUF81; KEGG: xau:Xaut_3951 protein of unknown function DUF81; hypothetical protein 4378274 6411762 Rpal_4078 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993049.1 4377489 D 395960 CDS YP_001993050.1 192292445 6411763 4378512..4378868 1 NC_011004.1 PFAM: regulatory protein MarR; regulatory protein ArsR; KEGG: sus:Acid_4411 transcriptional regulator, ArsR family; MarR family transcriptional regulator 4378868 6411763 Rpal_4079 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001993050.1 4378512 D 395960 CDS YP_001993051.1 192292446 6411764 4378858..4379709 1 NC_011004.1 in Rhodopseudomonas palustris this protein confers resistance to arsenite; catalyzes the formation of a number of methylated intermediates from arsenite and SAM producing trimethylarsine; arsenite S-adenosylmethyltransferase 4379709 arsM 6411764 arsM Rhodopseudomonas palustris TIE-1 arsenite S-adenosylmethyltransferase YP_001993051.1 4378858 D 395960 CDS YP_001993052.1 192292447 6411765 complement(4379928..4380128) 1 NC_011004.1 KEGG: bbt:BBta_2412 hypothetical protein; hypothetical protein 4380128 6411765 Rpal_4081 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993052.1 4379928 R 395960 CDS YP_001993053.1 192292448 6411766 complement(4380361..4380759) 1 NC_011004.1 KEGG: nha:Nham_3319 hypothetical protein; hypothetical protein 4380759 6411766 Rpal_4082 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993053.1 4380361 R 395960 CDS YP_001993054.1 192292449 6411767 complement(4381010..4382458) 1 NC_011004.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 4382458 tnaA 6411767 tnaA Rhodopseudomonas palustris TIE-1 tryptophanase YP_001993054.1 4381010 R 395960 CDS YP_001993055.1 192292450 6411768 4382729..4383448 1 NC_011004.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr6636 ATP synthase subunit; ErfK/YbiS/YcfS/YnhG family protein 4383448 6411768 Rpal_4084 Rhodopseudomonas palustris TIE-1 ErfK/YbiS/YcfS/YnhG family protein YP_001993055.1 4382729 D 395960 CDS YP_001993056.1 192292451 6411769 4383638..4383976 1 NC_011004.1 hypothetical protein 4383976 6411769 Rpal_4085 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993056.1 4383638 D 395960 CDS YP_001993057.1 192292452 6411770 4384133..4385695 1 NC_011004.1 KEGG: nha:Nham_2886 hypothetical protein; hypothetical protein 4385695 6411770 Rpal_4086 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993057.1 4384133 D 395960 CDS YP_001993058.1 192292453 6411771 complement(4385790..4386329) 1 NC_011004.1 PFAM: PRC-barrel domain protein; KEGG: bbt:BBta_6218 exported protein of unknown function; PRC-barrel domain-containing protein 4386329 6411771 Rpal_4087 Rhodopseudomonas palustris TIE-1 PRC-barrel domain-containing protein YP_001993058.1 4385790 R 395960 CDS YP_001993059.1 192292454 6411772 complement(4386617..4387159) 1 NC_011004.1 KEGG: bja:bll6650 hypothetical protein; hypothetical protein 4387159 6411772 Rpal_4088 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993059.1 4386617 R 395960 CDS YP_001993060.1 192292455 6411773 4387327..4388049 1 NC_011004.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bbt:BBta_6216 two component response transcriptional regulator (OmpR family); winged helix family two component transcriptional regulator 4388049 6411773 Rpal_4089 Rhodopseudomonas palustris TIE-1 winged helix family two component transcriptional regulator YP_001993060.1 4387327 D 395960 CDS YP_001993061.1 192292456 6411774 4388046..4389380 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bja:blr6652 two-component hybrid sensor and regulator; integral membrane sensor signal transduction histidine kinase 4389380 6411774 Rpal_4090 Rhodopseudomonas palustris TIE-1 integral membrane sensor signal transduction histidine kinase YP_001993061.1 4388046 D 395960 CDS YP_001993062.1 192292457 6411775 complement(4389399..4390877) 1 NC_011004.1 KEGG: bra:BRADO5707 hypothetical protein; hypothetical protein 4390877 6411775 Rpal_4091 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993062.1 4389399 R 395960 CDS YP_001993063.1 192292458 6411776 4391200..4392306 1 NC_011004.1 PFAM: FAD dependent oxidoreductase; KEGG: bja:blr6655 thiamine biosynthesis oxidoreductase; FAD dependent oxidoreductase 4392306 6411776 Rpal_4092 Rhodopseudomonas palustris TIE-1 FAD dependent oxidoreductase YP_001993063.1 4391200 D 395960 CDS YP_001993064.1 192292459 6411777 4392297..4392494 1 NC_011004.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: bbt:BBta_6223 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 4392494 6411777 Rpal_4093 Rhodopseudomonas palustris TIE-1 thiamine biosynthesis protein ThiS YP_001993064.1 4392297 D 395960 CDS YP_001993065.1 192292460 6411778 4392747..4393529 1 NC_011004.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4393529 thiG 6411778 thiG Rhodopseudomonas palustris TIE-1 thiazole synthase YP_001993065.1 4392747 D 395960 CDS YP_001993066.1 192292461 6411779 4393516..4394124 1 NC_011004.1 PFAM: thiamine monophosphate synthase; KEGG: nwi:Nwi_2467 thiamine monophosphate synthase; thiamine-phosphate diphosphorylase 4394124 6411779 Rpal_4095 Rhodopseudomonas palustris TIE-1 thiamine-phosphate diphosphorylase YP_001993066.1 4393516 D 395960 CDS YP_001993067.1 192292462 6411780 4394348..4396273 1 NC_011004.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 4396273 6411780 Rpal_4096 Rhodopseudomonas palustris TIE-1 thiamine biosynthesis protein ThiC YP_001993067.1 4394348 D 395960 CDS YP_001993068.1 192292463 6411781 4396622..4397551 1 NC_011004.1 KEGG: nha:Nham_2360 hypothetical protein; hypothetical protein 4397551 6411781 Rpal_4097 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993068.1 4396622 D 395960 CDS YP_001993069.1 192292464 6411782 4397819..4398862 1 NC_011004.1 KEGG: rle:pRL110097 hypothetical protein; hypothetical protein 4398862 6411782 Rpal_4098 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993069.1 4397819 D 395960 CDS YP_001993070.1 192292465 6411783 complement(4399015..4399413) 1 NC_011004.1 PFAM: protein of unknown function DUF1486; KEGG: bxe:Bxe_B0561 hypothetical protein; hypothetical protein 4399413 6411783 Rpal_4099 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993070.1 4399015 R 395960 CDS YP_001993071.1 192292466 6411784 complement(4399603..4399836) 1 NC_011004.1 KEGG: rba:RB3982 hypothetical protein; hypothetical protein 4399836 6411784 Rpal_4100 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993071.1 4399603 R 395960 CDS YP_001993072.1 192292467 6411785 complement(4399957..4400487) 1 NC_011004.1 KEGG: ecs:ECs4262 hypothetical protein; hypothetical protein 4400487 6411785 Rpal_4101 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993072.1 4399957 R 395960 CDS YP_001993073.1 192292468 6411786 complement(4400475..4400813) 1 NC_011004.1 PFAM: Protein of unknown function DUF1778; KEGG: acr:Acry_0280 uncharacterized protein-like protein; hypothetical protein 4400813 6411786 Rpal_4102 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993073.1 4400475 R 395960 CDS YP_001993074.1 192292469 6411787 4400991..4401770 1 NC_011004.1 hypothetical protein 4401770 6411787 Rpal_4103 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993074.1 4400991 D 395960 CDS YP_001993075.1 192292470 6411788 complement(4401952..4402464) 1 NC_011004.1 KEGG: afw:Anae109_4320 hypothetical protein; hypothetical protein 4402464 6411788 Rpal_4104 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993075.1 4401952 R 395960 CDS YP_001993076.1 192292471 6411789 complement(4402774..4403238) 1 NC_011004.1 KEGG: azc:AZC_4607 hypothetical protein; hypothetical protein 4403238 6411789 Rpal_4105 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993076.1 4402774 R 395960 CDS YP_001993077.1 192292472 6411790 4404448..4404732 1 NC_011004.1 hypothetical protein 4404732 6411790 Rpal_4106 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993077.1 4404448 D 395960 CDS YP_001993078.1 192292473 6411791 4404894..4405082 1 NC_011004.1 hypothetical protein 4405082 6411791 Rpal_4107 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993078.1 4404894 D 395960 CDS YP_001993079.1 192292474 6411792 complement(4405100..4406392) 1 NC_011004.1 PFAM: monooxygenase FAD-binding; KEGG: bbt:BBta_7587 hypothetical protein; hypothetical protein 4406392 6411792 Rpal_4108 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993079.1 4405100 R 395960 CDS YP_001993080.1 192292475 6411793 4406689..4407243 1 NC_011004.1 hypothetical protein 4407243 6411793 Rpal_4109 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993080.1 4406689 D 395960 CDS YP_001993081.1 192292476 6411794 complement(4407236..4407664) 1 NC_011004.1 KEGG: nha:Nham_2898 hypothetical protein; hypothetical protein 4407664 6411794 Rpal_4110 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993081.1 4407236 R 395960 CDS YP_001993082.1 192292477 6411795 4407867..4408250 1 NC_011004.1 PFAM: Endoribonuclease L-PSP; KEGG: bja:blr6667 hypothetical protein; endoribonuclease L-PSP 4408250 6411795 Rpal_4111 Rhodopseudomonas palustris TIE-1 endoribonuclease L-PSP YP_001993082.1 4407867 D 395960 CDS YP_001993083.1 192292478 6411796 4408470..4409561 1 NC_011004.1 KEGG: bbt:BBta_4169 hypothetical protein; hypothetical protein 4409561 6411796 Rpal_4112 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993083.1 4408470 D 395960 CDS YP_001993084.1 192292479 6411797 4409667..4410305 1 NC_011004.1 PFAM: Collagen triple helix repeat; KEGG: bbt:BBta_6234 collagen-like protein; Collagen triple helix repeat 4410305 6411797 Rpal_4113 Rhodopseudomonas palustris TIE-1 Collagen triple helix repeat YP_001993084.1 4409667 D 395960 CDS YP_001993085.1 192292480 6411798 complement(4410348..4410614) 1 NC_011004.1 KEGG: bra:BRADO5723 hypothetical protein; hypothetical protein 4410614 6411798 Rpal_4114 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993085.1 4410348 R 395960 CDS YP_001993086.1 192292481 6411799 4410769..4411398 1 NC_011004.1 PFAM: SOUL heme-binding protein; KEGG: mrd:Mrad2831_4266 SOUL heme-binding protein; SOUL heme-binding protein 4411398 6411799 Rpal_4115 Rhodopseudomonas palustris TIE-1 SOUL heme-binding protein YP_001993086.1 4410769 D 395960 CDS YP_001993087.1 192292482 6411800 complement(4411413..4412618) 1 NC_011004.1 PFAM: protein of unknown function DUF1501; KEGG: mrd:Mrad2831_5538 protein of unknown function DUF1501; hypothetical protein 4412618 6411800 Rpal_4116 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993087.1 4411413 R 395960 CDS YP_001993088.1 192292483 6411801 complement(4412605..4414185) 1 NC_011004.1 PFAM: Protein of unknown function DUF1800; KEGG: azc:AZC_3730 hypothetical protein; hypothetical protein 4414185 6411801 Rpal_4117 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993088.1 4412605 R 395960 CDS YP_001993089.1 192292484 6411802 4414532..4416235 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_2901 methyl-accepting chemotaxis receptor/sensory transducer precursor (chemoreceptor); methyl-accepting chemotaxis sensory transducer 4416235 6411802 Rpal_4118 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001993089.1 4414532 D 395960 CDS YP_001993090.1 192292485 6411803 4416372..4416914 1 NC_011004.1 hypothetical protein 4416914 6411803 Rpal_4119 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993090.1 4416372 D 395960 CDS YP_001993091.1 192292486 6411804 complement(4416969..4417451) 1 NC_011004.1 TIGRFAM: bacterioferritin; PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: xau:Xaut_3765 bacterioferritin; bacterioferritin 4417451 6411804 Rpal_4120 Rhodopseudomonas palustris TIE-1 bacterioferritin YP_001993091.1 4416969 R 395960 CDS YP_001993092.1 192292487 6411805 complement(4417574..4417774) 1 NC_011004.1 KEGG: nwi:Nwi_2476 bacterioferritin; bacterioferritin 4417774 6411805 Rpal_4121 Rhodopseudomonas palustris TIE-1 bacterioferritin YP_001993092.1 4417574 R 395960 CDS YP_001993093.1 192292488 6411806 4418173..4418532 1 NC_011004.1 KEGG: bja:blr6682 hypothetical protein; hypothetical protein 4418532 6411806 Rpal_4122 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993093.1 4418173 D 395960 CDS YP_001993094.1 192292489 6411807 4418753..4419037 1 NC_011004.1 KEGG: nha:Nham_2906 hypothetical protein; hypothetical protein 4419037 6411807 Rpal_4123 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993094.1 4418753 D 395960 CDS YP_001993095.1 192292490 6411808 complement(4419114..4420358) 1 NC_011004.1 TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: bja:bll6684 transglycosylase; lytic murein transglycosylase 4420358 6411808 Rpal_4124 Rhodopseudomonas palustris TIE-1 lytic murein transglycosylase YP_001993095.1 4419114 R 395960 CDS YP_001993096.1 192292491 6411809 complement(4420358..4420948) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bbt:BBta_6250 hypothetical protein; hypothetical protein 4420948 6411809 Rpal_4125 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993096.1 4420358 R 395960 CDS YP_001993097.1 192292492 6411810 complement(4421123..4421893) 1 NC_011004.1 catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate; trans-aconitate 2-methyltransferase 4421893 6411810 Rpal_4126 Rhodopseudomonas palustris TIE-1 trans-aconitate 2-methyltransferase YP_001993097.1 4421123 R 395960 CDS YP_001993098.1 192292493 6411811 4421993..4422292 1 NC_011004.1 PFAM: protein of unknown function DUF497; KEGG: nwi:Nwi_2483 protein of unknown function DUF497; hypothetical protein 4422292 6411811 Rpal_4127 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993098.1 4421993 D 395960 CDS YP_001993099.1 192292494 6411812 4422279..4422536 1 NC_011004.1 KEGG: nwi:Nwi_2484 hypothetical protein; hypothetical protein 4422536 6411812 Rpal_4128 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993099.1 4422279 D 395960 CDS YP_001993100.1 192292495 6411813 complement(4422753..4424402) 1 NC_011004.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 4424402 6411813 Rpal_4129 Rhodopseudomonas palustris TIE-1 ABC transporter ATP-binding protein YP_001993100.1 4422753 R 395960 CDS YP_001993101.1 192292496 6411814 4424643..4424843 1 NC_011004.1 KEGG: bja:bsr6686 hypothetical protein; hypothetical protein 4424843 6411814 Rpal_4130 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993101.1 4424643 D 395960 CDS YP_001993102.1 192292497 6411815 complement(4424923..4426188) 1 NC_011004.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:bll6688 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 4426188 6411815 Rpal_4131 Rhodopseudomonas palustris TIE-1 ErfK/YbiS/YcfS/YnhG family protein YP_001993102.1 4424923 R 395960 CDS YP_001993103.1 192292498 6411816 4426598..4427596 1 NC_011004.1 KEGG: lma:LmjF35.0290 hypothetical protein, conserved; hypothetical protein 4427596 6411816 Rpal_4132 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993103.1 4426598 D 395960 CDS YP_001993104.1 192292499 6411817 complement(4427609..4428469) 1 NC_011004.1 PFAM: rhodanese domain protein; KEGG: nha:Nham_2916 3-mercaptopyruvate sulfurtransferase; rhodanese domain-containing protein 4428469 6411817 Rpal_4133 Rhodopseudomonas palustris TIE-1 rhodanese domain-containing protein YP_001993104.1 4427609 R 395960 CDS YP_001993105.1 192292500 6411818 complement(4428587..4429003) 1 NC_011004.1 SMART: rhodanese domain protein; KEGG: bja:bll6691 hypothetical protein; rhodanese domain-containing protein 4429003 6411818 Rpal_4134 Rhodopseudomonas palustris TIE-1 rhodanese domain-containing protein YP_001993105.1 4428587 R 395960 CDS YP_001993106.1 192292501 6411819 complement(4429150..4430325) 1 NC_011004.1 KEGG: bra:BRADO5746 hypothetical protein; hypothetical protein 4430325 6411819 Rpal_4135 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993106.1 4429150 R 395960 CDS YP_001993107.1 192292502 6411820 4430534..4432426 1 NC_011004.1 KEGG: bja:bll1362 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 4432426 6411820 Rpal_4136 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor-containing diguanylate cyclase YP_001993107.1 4430534 D 395960 CDS YP_001993108.1 192292503 6411821 4432596..4432850 1 NC_011004.1 PFAM: Transglycosylase-associated protein; KEGG: nha:Nham_2918 transglycosylase-associated protein; transglycosylase 4432850 6411821 Rpal_4137 Rhodopseudomonas palustris TIE-1 transglycosylase YP_001993108.1 4432596 D 395960 CDS YP_001993109.1 192292504 6411822 4432965..4433807 1 NC_011004.1 PFAM: ATPase AAA; SMART: ATPase AAA; KEGG: bbt:BBta_6260 ATPase, AAA family; ATPase AAA 4433807 6411822 Rpal_4138 Rhodopseudomonas palustris TIE-1 ATPase AAA YP_001993109.1 4432965 D 395960 CDS YP_001993110.1 192292505 6411823 4434412..4435455 1 NC_011004.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bra:BRADO1867 vanillate O-demethylase oxygenase, iron-sulfur subunit (modular protein=subunit from monooxygenase) (VanA-like); vanillate monooxygenase 4435455 6411823 Rpal_4139 Rhodopseudomonas palustris TIE-1 vanillate monooxygenase YP_001993110.1 4434412 D 395960 CDS YP_001993111.1 192292506 6411824 4435459..4436214 1 NC_011004.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bja:blr2391 transcriptional regulatory protein; GntR family transcriptional regulator 4436214 6411824 Rpal_4140 Rhodopseudomonas palustris TIE-1 GntR family transcriptional regulator YP_001993111.1 4435459 D 395960 CDS YP_001993112.1 192292507 6411825 4436245..4437237 1 NC_011004.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: bja:blr2392 dioxygenase subunit; oxidoreductase FAD/NAD(P)-binding domain-containing protein 4437237 6411825 Rpal_4141 Rhodopseudomonas palustris TIE-1 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_001993112.1 4436245 D 395960 CDS YP_001993113.1 192292508 6411826 complement(4437339..4437623) 1 NC_011004.1 hypothetical protein 4437623 6411826 Rpal_4142 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993113.1 4437339 R 395960 CDS YP_001993114.1 192292509 6411827 complement(4437764..4438360) 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_2919 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4438360 6411827 Rpal_4143 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001993114.1 4437764 R 395960 CDS YP_001993115.1 192292510 6411828 complement(4438509..4439438) 1 NC_011004.1 PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: bra:BRADO5762 gluconolactonase; SMP-30/gluconolaconase/LRE domain-containing protein 4439438 6411828 Rpal_4144 Rhodopseudomonas palustris TIE-1 SMP-30/gluconolaconase/LRE domain-containing protein YP_001993115.1 4438509 R 395960 CDS YP_001993116.1 192292511 6411829 complement(4439590..4439958) 1 NC_011004.1 KEGG: bbt:BBta_6276 exported protein of unknown function; hypothetical protein 4439958 6411829 Rpal_4145 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993116.1 4439590 R 395960 CDS YP_001993117.1 192292512 6411830 4440074..4440418 1 NC_011004.1 PFAM: excinuclease ABC subunit C; KEGG: pub:SAR11_1011 excinuclease ABC; excinuclease ABC subunit C 4440418 6411830 Rpal_4146 Rhodopseudomonas palustris TIE-1 excinuclease ABC subunit C YP_001993117.1 4440074 D 395960 CDS YP_001993118.1 192292513 6411831 complement(4441258..4441512) 1 NC_011004.1 KEGG: bra:BRADO5787 hypothetical protein; hypothetical protein 4441512 6411831 Rpal_4147 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993118.1 4441258 R 395960 CDS YP_001993119.1 192292514 6411832 complement(4441509..4441985) 1 NC_011004.1 PFAM: glutathione peroxidase; KEGG: bra:BRADO5788 glutathione peroxidase; glutathione peroxidase 4441985 6411832 Rpal_4148 Rhodopseudomonas palustris TIE-1 glutathione peroxidase YP_001993119.1 4441509 R 395960 CDS YP_001993120.1 192292515 6411833 complement(4442004..4443401) 1 NC_011004.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 4443401 6411833 Rpal_4149 Rhodopseudomonas palustris TIE-1 amidase YP_001993120.1 4442004 R 395960 CDS YP_001993121.1 192292516 6411834 complement(4443473..4443730) 1 NC_011004.1 KEGG: nha:Nham_3268 hypothetical protein; hypothetical protein 4443730 6411834 Rpal_4150 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993121.1 4443473 R 395960 CDS YP_001993122.1 192292517 6411835 4443867..4444856 1 NC_011004.1 KEGG: bbt:BBta_6305 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 4444856 6411835 Rpal_4151 Rhodopseudomonas palustris TIE-1 proline iminopeptidase YP_001993122.1 4443867 D 395960 CDS YP_001993123.1 192292518 6411836 complement(4444866..4445639) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_4730 short-chain dehydrogenases/reductases (SDR) family protein; short-chain dehydrogenase/reductase SDR 4445639 6411836 Rpal_4152 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001993123.1 4444866 R 395960 CDS YP_001993124.1 192292519 6411837 4445737..4446219 1 NC_011004.1 PFAM: helix-turn-helix HxlR type; KEGG: bja:blr5109 transcriptional regulatory protein; HxlR family transcriptional regulator 4446219 6411837 Rpal_4153 Rhodopseudomonas palustris TIE-1 HxlR family transcriptional regulator YP_001993124.1 4445737 D 395960 CDS YP_001993125.1 192292520 6411838 4446239..4446913 1 NC_011004.1 KEGG: bja:blr6741 hypothetical protein; hypothetical protein 4446913 6411838 Rpal_4154 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993125.1 4446239 D 395960 CDS YP_001993126.1 192292521 6411839 4447129..4449981 1 NC_011004.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; catalyzes isomerization of glucose 6-phosphate and fructose 6-phosphate; bifunctional transaldolase/phosoglucose isomerase 4449981 6411839 Rpal_4155 Rhodopseudomonas palustris TIE-1 bifunctional transaldolase/phosoglucose isomerase YP_001993126.1 4447129 D 395960 CDS YP_001993127.1 192292522 6411840 4450168..4451208 1 NC_011004.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 4451208 6411840 Rpal_4156 Rhodopseudomonas palustris TIE-1 6-phosphogluconate dehydrogenase YP_001993127.1 4450168 D 395960 CDS YP_001993128.1 192292523 6411841 4451205..4452719 1 NC_011004.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 4452719 6411841 Rpal_4157 Rhodopseudomonas palustris TIE-1 glucose-6-phosphate 1-dehydrogenase YP_001993128.1 4451205 D 395960 CDS YP_001993129.1 192292524 6411842 4452722..4453462 1 NC_011004.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: bja:blr6761 6-phosphogluconolactonase; 6-phosphogluconolactonase 4453462 6411842 Rpal_4158 Rhodopseudomonas palustris TIE-1 6-phosphogluconolactonase YP_001993129.1 4452722 D 395960 CDS YP_001993130.1 192292525 6411843 4453446..4453994 1 NC_011004.1 KEGG: bbt:BBta_6318 6-phosphogluconolactonase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; thermoresistant glucokinase family carbohydrate kinase 4453994 6411843 Rpal_4159 Rhodopseudomonas palustris TIE-1 thermoresistant glucokinase family carbohydrate kinase YP_001993130.1 4453446 D 395960 CDS YP_001993131.1 192292526 6411844 4454118..4454936 1 NC_011004.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: bja:blr6763 hypothetical protein; cof family hydrolase 4454936 6411844 Rpal_4160 Rhodopseudomonas palustris TIE-1 cof family hydrolase YP_001993131.1 4454118 D 395960 CDS YP_001993132.1 192292527 6411845 complement(4454933..4456741) 1 NC_011004.1 PFAM: glycoside hydrolase 15-related; KEGG: bja:bll6764 hypothetical protein; glycoside hydrolase 15-like protein 4456741 6411845 Rpal_4161 Rhodopseudomonas palustris TIE-1 glycoside hydrolase 15-like protein YP_001993132.1 4454933 R 395960 CDS YP_001993133.1 192292528 6411846 complement(4456746..4458698) 1 NC_011004.1 KEGG: bbt:BBta_6321 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase 4458698 6411846 Rpal_4162 Rhodopseudomonas palustris TIE-1 4-alpha-glucanotransferase YP_001993133.1 4456746 R 395960 CDS YP_001993134.1 192292529 6411847 4458907..4460862 1 NC_011004.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: nha:Nham_1466 alpha amylase, catalytic region; alpha amylase 4460862 6411847 Rpal_4163 Rhodopseudomonas palustris TIE-1 alpha amylase YP_001993134.1 4458907 D 395960 CDS YP_001993135.1 192292530 6411848 4460873..4464175 1 NC_011004.1 KEGG: bja:blr6767 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase 4464175 6411848 Rpal_4164 Rhodopseudomonas palustris TIE-1 trehalose synthase YP_001993135.1 4460873 D 395960 CDS YP_001993136.1 192292531 6411849 4464172..4466322 1 NC_011004.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 4466322 6411849 Rpal_4165 Rhodopseudomonas palustris TIE-1 glycogen branching protein YP_001993136.1 4464172 D 395960 CDS YP_001993137.1 192292532 6411850 4466560..4468641 1 NC_011004.1 KEGG: bbt:BBta_6324 glycosyl hydrolase (glycogen debranching enzyme); TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 4468641 6411850 Rpal_4166 Rhodopseudomonas palustris TIE-1 glycogen debranching protein GlgX YP_001993137.1 4466560 D 395960 CDS YP_001993138.1 192292533 6411851 4468638..4470404 1 NC_011004.1 KEGG: bra:BRADO5819 maltooligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose trehalohydrolase 4470404 6411851 Rpal_4167 Rhodopseudomonas palustris TIE-1 malto-oligosyltrehalose trehalohydrolase YP_001993138.1 4468638 D 395960 CDS YP_001993139.1 192292534 6411852 4470404..4473190 1 NC_011004.1 KEGG: bra:BRADO5820 glycosyl hydrolase (glycosidase); TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose synthase 4473190 6411852 Rpal_4168 Rhodopseudomonas palustris TIE-1 malto-oligosyltrehalose synthase YP_001993139.1 4470404 D 395960 CDS YP_001993140.1 192292535 6411853 complement(4473591..4473899) 1 NC_011004.1 KEGG: bbt:BBta_6327 hypothetical protein; hypothetical protein 4473899 6411853 Rpal_4169 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993140.1 4473591 R 395960 CDS YP_001993141.1 192292536 6411854 4474076..4474240 1 NC_011004.1 KEGG: nha:Nham_2869 hypothetical protein; hypothetical protein 4474240 6411854 Rpal_4170 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993141.1 4474076 D 395960 CDS YP_001993142.1 192292537 6411855 complement(4474379..4477123) 1 NC_011004.1 catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 4477123 ligD 6411855 ligD Rhodopseudomonas palustris TIE-1 ATP-dependent DNA ligase YP_001993142.1 4474379 R 395960 CDS YP_001993143.1 192292538 6411856 4477257..4478138 1 NC_011004.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: bja:blr6774 hypothetical protein; Ku protein 4478138 6411856 Rpal_4172 Rhodopseudomonas palustris TIE-1 Ku protein YP_001993143.1 4477257 D 395960 CDS YP_001993144.1 192292539 6411857 complement(4478366..4478758) 1 NC_011004.1 KEGG: bra:BRADO5825 hypothetical protein; hypothetical protein 4478758 6411857 Rpal_4173 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993144.1 4478366 R 395960 CDS YP_001993145.1 192292540 6411858 complement(4478822..4479079) 1 NC_011004.1 PFAM: SirA family protein; KEGG: nha:Nham_3129 SirA-like; SirA family protein 4479079 6411858 Rpal_4174 Rhodopseudomonas palustris TIE-1 SirA family protein YP_001993145.1 4478822 R 395960 CDS YP_001993146.1 192292541 6411859 4479207..4479827 1 NC_011004.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4479827 mobA 6411859 mobA Rhodopseudomonas palustris TIE-1 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_001993146.1 4479207 D 395960 CDS YP_001993147.1 192292542 6411860 complement(4479937..4480989) 1 NC_011004.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr2780 probable NAD-dependent alcohol dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 4480989 6411860 Rpal_4176 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase GroES domain-containing protein YP_001993147.1 4479937 R 395960 CDS YP_001993148.1 192292543 6411861 complement(4481068..4482030) 1 NC_011004.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: bja:blr1330 hypothetical protein; 2-nitropropane dioxygenase 4482030 6411861 Rpal_4177 Rhodopseudomonas palustris TIE-1 2-nitropropane dioxygenase YP_001993148.1 4481068 R 395960 CDS YP_001993149.1 192292544 6411862 4482142..4483704 1 NC_011004.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 4483704 6411862 Rpal_4178 Rhodopseudomonas palustris TIE-1 acyl-CoA synthetase YP_001993149.1 4482142 D 395960 CDS YP_001993150.1 192292545 6411863 complement(4483770..4484492) 1 NC_011004.1 PFAM: urease accessory protein UreF; KEGG: bja:blr1459 urease accessory protein; urease accessory protein UreF 4484492 6411863 Rpal_4179 Rhodopseudomonas palustris TIE-1 urease accessory protein UreF YP_001993150.1 4483770 R 395960 CDS YP_001993151.1 192292546 6411864 complement(4484482..4485138) 1 NC_011004.1 PFAM: UreE urease accessory domain protein; KEGG: bra:BRADO1043 urease accessory protein UreE; UreE urease accessory domain-containing protein 4485138 6411864 Rpal_4180 Rhodopseudomonas palustris TIE-1 UreE urease accessory domain-containing protein YP_001993151.1 4484482 R 395960 CDS YP_001993152.1 192292547 6411865 complement(4485147..4485446) 1 NC_011004.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bja:bsr1458 hypothetical protein; antibiotic biosynthesis monooxygenase 4485446 6411865 Rpal_4181 Rhodopseudomonas palustris TIE-1 antibiotic biosynthesis monooxygenase YP_001993152.1 4485147 R 395960 CDS YP_001993153.1 192292548 6411866 complement(4485650..4487362) 1 NC_011004.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 4487362 ureC 6411866 ureC Rhodopseudomonas palustris TIE-1 urease subunit alpha YP_001993153.1 4485650 R 395960 CDS YP_001993154.1 192292549 6411867 complement(4487359..4487895) 1 NC_011004.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: mex:Mext_3018 metal-dependent phosphohydrolase HD sub domain; metal dependent phosphohydrolase 4487895 6411867 Rpal_4183 Rhodopseudomonas palustris TIE-1 metal dependent phosphohydrolase YP_001993154.1 4487359 R 395960 CDS YP_001993155.1 192292550 6411868 complement(4487895..4488200) 1 NC_011004.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta 4488200 ureB 6411868 ureB Rhodopseudomonas palustris TIE-1 urease subunit beta YP_001993155.1 4487895 R 395960 CDS YP_001993156.1 192292551 6411869 complement(4488362..4488664) 1 NC_011004.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 4488664 ureA 6411869 ureA Rhodopseudomonas palustris TIE-1 urease subunit gamma YP_001993156.1 4488362 R 395960 CDS YP_001993157.1 192292552 6411870 complement(4488711..4489628) 1 NC_011004.1 PFAM: urease accessory protein UreD; KEGG: bja:blr1453 urease accessory protein; urease accessory protein UreD 4489628 6411870 Rpal_4186 Rhodopseudomonas palustris TIE-1 urease accessory protein UreD YP_001993157.1 4488711 R 395960 CDS YP_001993158.1 192292553 6411871 complement(4489827..4490522) 1 NC_011004.1 KEGG: bbt:BBta_7014 branched-chain amino acid ABC transporter (ATP-binding protein); TIGRFAM: urea ABC transporter ATP-binding protein UrtE; PFAM: ABC transporter; SMART: ATPase AAA; urea ABC transporter ATP-binding protein 4490522 6411871 Rpal_4187 Rhodopseudomonas palustris TIE-1 urea ABC transporter ATP-binding protein YP_001993158.1 4489827 R 395960 CDS YP_001993159.1 192292554 6411872 complement(4490724..4491488) 1 NC_011004.1 KEGG: bja:blr1451 ABC transporter ATP-binding protein; TIGRFAM: urea ABC transporter ATP-binding protein UrtD; PFAM: ABC transporter; SMART: ATPase AAA; urea ABC transporter ATP-binding protein 4491488 6411872 Rpal_4188 Rhodopseudomonas palustris TIE-1 urea ABC transporter ATP-binding protein YP_001993159.1 4490724 R 395960 CDS YP_001993160.1 192292555 6411873 complement(4491485..4492660) 1 NC_011004.1 TIGRFAM: urea ABC transporter permease protein UrtC; PFAM: inner-membrane translocator; KEGG: bra:BRADO1033 branched-chain amino acid ABC transporter (permease protein); urea ABC transporter permease 4492660 6411873 Rpal_4189 Rhodopseudomonas palustris TIE-1 urea ABC transporter permease YP_001993160.1 4491485 R 395960 CDS YP_001993161.1 192292556 6411874 complement(4492833..4494446) 1 NC_011004.1 TIGRFAM: urea ABC transporter permease protein UrtB; PFAM: inner-membrane translocator; KEGG: bja:blr1449 ABC transporter permease protein; urea ABC transporter permease 4494446 6411874 Rpal_4190 Rhodopseudomonas palustris TIE-1 urea ABC transporter permease YP_001993161.1 4492833 R 395960 CDS YP_001993162.1 192292557 6411875 complement(4494556..4495878) 1 NC_011004.1 TIGRFAM: urea ABC transporter urea binding protein; KEGG: bra:BRADO1031 branched-chain amino acid ABC transporter (substrate-binding protein); urea ABC transporter substrate-binding protein 4495878 6411875 Rpal_4191 Rhodopseudomonas palustris TIE-1 urea ABC transporter substrate-binding protein YP_001993162.1 4494556 R 395960 CDS YP_001993163.1 192292558 6411876 4496366..4497790 1 NC_011004.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: nha:Nham_0400 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 4497790 6411876 Rpal_4192 Rhodopseudomonas palustris TIE-1 DEAD/DEAH box helicase YP_001993163.1 4496366 D 395960 CDS YP_001993164.1 192292559 6411877 4497815..4498093 1 NC_011004.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 4498093 infA 6411877 infA Rhodopseudomonas palustris TIE-1 translation initiation factor IF-1 YP_001993164.1 4497815 D 395960 CDS YP_001993165.1 192292560 6411878 4498375..4498587 1 NC_011004.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bbt:BBta_7022 cold shock protein, DNA binding; cold-shock DNA-binding domain-containing protein 4498587 6411878 Rpal_4194 Rhodopseudomonas palustris TIE-1 cold-shock DNA-binding domain-containing protein YP_001993165.1 4498375 D 395960 CDS YP_001993166.1 192292561 6411879 complement(4498701..4499327) 1 NC_011004.1 PFAM: TadE family protein; KEGG: bbt:BBta_7023 hypothetical protein; TadE family protein 4499327 6411879 Rpal_4195 Rhodopseudomonas palustris TIE-1 TadE family protein YP_001993166.1 4498701 R 395960 CDS YP_001993167.1 192292562 6411880 complement(4499340..4499873) 1 NC_011004.1 PFAM: TadE family protein; KEGG: bbt:BBta_7024 exported protein of unknown function; TadE family protein 4499873 6411880 Rpal_4196 Rhodopseudomonas palustris TIE-1 TadE family protein YP_001993167.1 4499340 R 395960 CDS YP_001993168.1 192292563 6411881 4500781..4500945 1 NC_011004.1 PFAM: Flp/Fap pilin component; KEGG: bbt:BBta_7028 Flp/Fap pilin component; Flp/Fap pilin component 4500945 6411881 Rpal_4197 Rhodopseudomonas palustris TIE-1 Flp/Fap pilin component YP_001993168.1 4500781 D 395960 CDS YP_001993169.1 192292564 6411882 4501273..4501797 1 NC_011004.1 PFAM: peptidase A24A prepilin type IV; KEGG: nwi:Nwi_0303 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 4501797 6411882 Rpal_4198 Rhodopseudomonas palustris TIE-1 peptidase A24A prepilin type IV YP_001993169.1 4501273 D 395960 CDS YP_001993170.1 192292565 6411883 4501904..4502485 1 NC_011004.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: bja:bll1440 pilus assembly protein; Flp pilus assembly protein CpaB 4502485 6411883 Rpal_4199 Rhodopseudomonas palustris TIE-1 Flp pilus assembly protein CpaB YP_001993170.1 4501904 D 395960 CDS YP_001993171.1 192292566 6411884 4502500..4503942 1 NC_011004.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: nha:Nham_0391 type II and III secretion system protein; type II and III secretion system protein 4503942 6411884 Rpal_4200 Rhodopseudomonas palustris TIE-1 type II and III secretion system protein YP_001993171.1 4502500 D 395960 CDS YP_001993172.1 192292567 6411885 4503962..4504690 1 NC_011004.1 TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; PFAM: Pilus biogenesis CpaD family protein; KEGG: nha:Nham_0390 pilus assembly protein CpaD; pilus biogenesis lipoprotein CpaD 4504690 6411885 Rpal_4201 Rhodopseudomonas palustris TIE-1 pilus biogenesis lipoprotein CpaD YP_001993172.1 4503962 D 395960 CDS YP_001993173.1 192292568 6411886 4504687..4505958 1 NC_011004.1 KEGG: bbt:BBta_7033 pilus assembly protein CpaE; pilus assembly protein CpaE 4505958 6411886 Rpal_4202 Rhodopseudomonas palustris TIE-1 pilus assembly protein CpaE YP_001993173.1 4504687 D 395960 CDS YP_001993174.1 192292569 6411887 4505979..4507433 1 NC_011004.1 PFAM: type II secretion system protein E; KEGG: bja:bll1436 pilus assembly protein; type II secretion system protein E 4507433 6411887 Rpal_4203 Rhodopseudomonas palustris TIE-1 type II secretion system protein E YP_001993174.1 4505979 D 395960 CDS YP_001993175.1 192292570 6411888 4507446..4508420 1 NC_011004.1 PFAM: type II secretion system protein; KEGG: bbt:BBta_7035 pilus assembly protein; type II secretion system protein 4508420 6411888 Rpal_4204 Rhodopseudomonas palustris TIE-1 type II secretion system protein YP_001993175.1 4507446 D 395960 CDS YP_001993176.1 192292571 6411889 4508429..4509403 1 NC_011004.1 PFAM: type II secretion system protein; KEGG: nha:Nham_0386 type II secretion system protein; type II secretion system protein 4509403 6411889 Rpal_4205 Rhodopseudomonas palustris TIE-1 type II secretion system protein YP_001993176.1 4508429 D 395960 CDS YP_001993177.1 192292572 6411890 complement(4509427..4510221) 1 NC_011004.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nha:Nham_0385 tetratricopeptide TPR_2; hypothetical protein 4510221 6411890 Rpal_4206 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993177.1 4509427 R 395960 CDS YP_001993178.1 192292573 6411891 4510339..4511721 1 NC_011004.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: nha:Nham_0384 leucyl aminopeptidase; leucyl aminopeptidase 4511721 6411891 Rpal_4207 Rhodopseudomonas palustris TIE-1 leucyl aminopeptidase YP_001993178.1 4510339 D 395960 CDS YP_001993179.1 192292574 6411892 4511714..4512559 1 NC_011004.1 PFAM: NLP/P60 protein; KEGG: bja:bll1430 hypothetical protein; NLP/P60 protein 4512559 6411892 Rpal_4208 Rhodopseudomonas palustris TIE-1 NLP/P60 protein YP_001993179.1 4511714 D 395960 CDS YP_001993180.1 192292575 6411893 complement(4512543..4513181) 1 NC_011004.1 PFAM: NUDIX hydrolase; KEGG: xau:Xaut_2637 NUDIX hydrolase; NUDIX hydrolase 4513181 6411893 Rpal_4209 Rhodopseudomonas palustris TIE-1 NUDIX hydrolase YP_001993180.1 4512543 R 395960 CDS YP_001993181.1 192292576 6411894 complement(4513189..4514826) 1 NC_011004.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: nwi:Nwi_0292 ABC transporter ATPase subunit; ABC transporter 4514826 6411894 Rpal_4210 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993181.1 4513189 R 395960 CDS YP_001993182.1 192292577 6411895 complement(4514832..4516010) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: nwi:Nwi_0291 ABC transporter inner membrane protein; ABC transporter inner membrane protein 4516010 6411895 Rpal_4211 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001993182.1 4514832 R 395960 CDS YP_001993183.1 192292578 6411896 complement(4516010..4517119) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: nha:Nham_0380 ABC transporter inner membrane protein; ABC transporter inner membrane protein 4517119 6411896 Rpal_4212 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001993183.1 4516010 R 395960 CDS YP_001993184.1 192292579 6411897 complement(4517121..4518986) 1 NC_011004.1 PFAM: extracellular solute-binding protein family 5; KEGG: nha:Nham_0379 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 4518986 6411897 Rpal_4213 Rhodopseudomonas palustris TIE-1 family 5 extracellular solute-binding protein YP_001993184.1 4517121 R 395960 CDS YP_001993185.1 192292580 6411898 complement(4519001..4520896) 1 NC_011004.1 PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_7055 oligopeptide transport protein (ABC superfamily, peri_bind); family 5 extracellular solute-binding protein 4520896 6411898 Rpal_4214 Rhodopseudomonas palustris TIE-1 family 5 extracellular solute-binding protein YP_001993185.1 4519001 R 395960 CDS YP_001993186.1 192292581 6411899 complement(4521109..4521663) 1 NC_011004.1 PFAM: cytochrome C class I; KEGG: bja:blr1423 cytochrome C; cytochrome C class I 4521663 6411899 Rpal_4215 Rhodopseudomonas palustris TIE-1 cytochrome C class I YP_001993186.1 4521109 R 395960 CDS YP_001993187.1 192292582 6411900 4521863..4522600 1 NC_011004.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 4522600 6411900 Rpal_4216 Rhodopseudomonas palustris TIE-1 3-deoxy-manno-octulosonate cytidylyltransferase YP_001993187.1 4521863 D 395960 CDS YP_001993188.1 192292583 6411901 4522672..4523514 1 NC_011004.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase 4523514 6411901 Rpal_4217 Rhodopseudomonas palustris TIE-1 prephenate dehydratase YP_001993188.1 4522672 D 395960 CDS YP_001993189.1 192292584 6411902 complement(4523554..4524180) 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B0850 transcriptional regulator, TetR family; TetR family transcriptional regulator 4524180 6411902 Rpal_4218 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001993189.1 4523554 R 395960 CDS YP_001993190.1 192292585 6411903 4524325..4525485 1 NC_011004.1 PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_A2816 MFS efflux system, membrane fusion protein, EmrA subfamily; secretion protein HlyD family protein 4525485 6411903 Rpal_4219 Rhodopseudomonas palustris TIE-1 secretion protein HlyD family protein YP_001993190.1 4524325 D 395960 CDS YP_001993191.1 192292586 6411904 4525482..4527014 1 NC_011004.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_1385 drug resistance transporter EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter 4527014 6411904 Rpal_4220 Rhodopseudomonas palustris TIE-1 EmrB/QacA subfamily drug resistance transporter YP_001993191.1 4525482 D 395960 CDS YP_001993192.1 192292587 6411905 4527031..4527759 1 NC_011004.1 PFAM: Siderophore-interacting protein; oxidoreductase FAD-binding protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: mxa:MXAN_3639 iron-chelator utilization protein; Siderophore-interacting protein 4527759 6411905 Rpal_4221 Rhodopseudomonas palustris TIE-1 Siderophore-interacting protein YP_001993192.1 4527031 D 395960 CDS YP_001993193.1 192292588 6411906 complement(4527827..4528843) 1 NC_011004.1 PFAM: monooxygenase; KEGG: bja:blr1420 flavin dependant oxidoreductase; monooxygenase 4528843 6411906 Rpal_4222 Rhodopseudomonas palustris TIE-1 monooxygenase YP_001993193.1 4527827 R 395960 CDS YP_001993194.1 192292589 6411907 4529253..4530140 1 NC_011004.1 KEGG: bbt:BBta_7060 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 4530140 6411907 Rpal_4223 Rhodopseudomonas palustris TIE-1 5,10-methylenetetrahydrofolate reductase YP_001993194.1 4529253 D 395960 CDS YP_001993195.1 192292590 6411908 4530153..4534034 1 NC_011004.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4534034 metH 6411908 metH Rhodopseudomonas palustris TIE-1 B12-dependent methionine synthase YP_001993195.1 4530153 D 395960 CDS YP_001993196.1 192292591 6411909 4535169..4535456 1 NC_011004.1 PFAM: excinuclease ABC subunit C; KEGG: bja:bsl5627 hypothetical protein; excinuclease ABC subunit C 4535456 6411909 Rpal_4225 Rhodopseudomonas palustris TIE-1 excinuclease ABC subunit C YP_001993196.1 4535169 D 395960 CDS YP_001993197.1 192292592 6411910 complement(4535783..4537285) 1 NC_011004.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: bbt:BBta_7067 glycerol kinase; glycerol kinase 4537285 6411910 Rpal_4226 Rhodopseudomonas palustris TIE-1 glycerol kinase YP_001993197.1 4535783 R 395960 CDS YP_001993198.1 192292593 6411911 4537494..4538078 1 NC_011004.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: bbt:BBta_4139 two-component response regulator; response regulator receiver and ANTAR domain-containing protein 4538078 6411911 Rpal_4227 Rhodopseudomonas palustris TIE-1 response regulator receiver and ANTAR domain-containing protein YP_001993198.1 4537494 D 395960 CDS YP_001993199.1 192292594 6411912 4538075..4539235 1 NC_011004.1 KEGG: bja:bll4572 nitrate transport protein; nitrate transport protein 4539235 6411912 Rpal_4228 Rhodopseudomonas palustris TIE-1 nitrate transport protein YP_001993199.1 4538075 D 395960 CDS YP_001993200.1 192292595 6411913 4539256..4539696 1 NC_011004.1 PFAM: globin; KEGG: bbt:BBta_3847 globin-like protein; globin 4539696 6411913 Rpal_4229 Rhodopseudomonas palustris TIE-1 globin YP_001993200.1 4539256 D 395960 CDS YP_001993201.1 192292596 6411914 4540054..4540476 1 NC_011004.1 PFAM: globin; KEGG: xau:Xaut_2501 globin; globin 4540476 6411914 Rpal_4230 Rhodopseudomonas palustris TIE-1 globin YP_001993201.1 4540054 D 395960 CDS YP_001993202.1 192292597 6411915 4540519..4542291 1 NC_011004.1 ferredoxin-dependent assimilatory nitrite reductase; ferredoxin-nitrite reductase 4542291 nirA 6411915 nirA Rhodopseudomonas palustris TIE-1 ferredoxin-nitrite reductase YP_001993202.1 4540519 D 395960 CDS YP_001993203.1 192292598 6411916 4542288..4543907 1 NC_011004.1 Catalyzes the reduction of sulfite to sulfide, an essential step in the anaerobic sulfate-respiration pathway; sulfite reductase 4543907 6411916 Rpal_4232 Rhodopseudomonas palustris TIE-1 sulfite reductase YP_001993203.1 4542288 D 395960 CDS YP_001993204.1 192292599 6411917 complement(4544227..4545000) 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_7068 dehydrogenase/reductase SDR family member; short-chain dehydrogenase/reductase SDR 4545000 6411917 Rpal_4233 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001993204.1 4544227 R 395960 CDS YP_001993205.1 192292600 6411918 complement(4545269..4546411) 1 NC_011004.1 TIGRFAM: pimeloyl-CoA dehydrogenase, small subunit; PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bra:BRADO0985 acyl-CoA dehydrogenase; Pimeloyl-CoA dehydrogenase PimD (small subunit); pimeloyl-CoA dehydrogenase, small subunit 4546411 6411918 Rpal_4234 Rhodopseudomonas palustris TIE-1 pimeloyl-CoA dehydrogenase, small subunit YP_001993205.1 4545269 R 395960 CDS YP_001993206.1 192292601 6411919 complement(4546580..4547770) 1 NC_011004.1 TIGRFAM: pimeloyl-CoA dehydrogenase, large subunit; PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bra:BRADO0984 acyl-CoA dehydrogenase; pimeloyl-CoA dehydrogenase PimC (large subunit); pimeloyl-CoA dehydrogenase, large subunit 4547770 6411919 Rpal_4235 Rhodopseudomonas palustris TIE-1 pimeloyl-CoA dehydrogenase, large subunit YP_001993206.1 4546580 R 395960 CDS YP_001993207.1 192292602 6411920 complement(4547984..4549171) 1 NC_011004.1 KEGG: bbt:BBta_7072 acetyl-CoA acetyltransferase with thiolase domain; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 4549171 6411920 Rpal_4236 Rhodopseudomonas palustris TIE-1 acetyl-CoA acetyltransferase YP_001993207.1 4547984 R 395960 CDS YP_001993208.1 192292603 6411921 complement(4549203..4550861) 1 NC_011004.1 TIGRFAM: dicarboxylate/CoA ligase PimA; PFAM: AMP-dependent synthetase and ligase; KEGG: bra:BRADO0982 long-chain-fatty-acid--CoA ligase; long-chain acyl-CoA synthetase; pimeloyl-CoA ligase PimA; dicarboxylate/CoA ligase PimA 4550861 6411921 Rpal_4237 Rhodopseudomonas palustris TIE-1 dicarboxylate/CoA ligase PimA YP_001993208.1 4549203 R 395960 CDS YP_001993209.1 192292604 6411922 complement(4551040..4553139) 1 NC_011004.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bja:bll7821 probable fatty oxidation complex alpha subunit; 3-hydroxyacyl-CoA dehydrogenase 4553139 6411922 Rpal_4238 Rhodopseudomonas palustris TIE-1 3-hydroxyacyl-CoA dehydrogenase YP_001993209.1 4551040 R 395960 CDS YP_001993210.1 192292605 6411923 4553272..4554138 1 NC_011004.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bja:blr7822 transcriptional regulatory protein; IclR family transcriptional regulator 4554138 6411923 Rpal_4239 Rhodopseudomonas palustris TIE-1 IclR family transcriptional regulator YP_001993210.1 4553272 D 395960 CDS YP_001993211.1 192292606 6411924 4554169..4554969 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr7823 ABC transporter ATP-binding protein; ABC transporter 4554969 6411924 Rpal_4240 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993211.1 4554169 D 395960 CDS YP_001993212.1 192292607 6411925 4554966..4555679 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr7824 ABC transporter ATP-binding protein; ABC transporter 4555679 6411925 Rpal_4241 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993212.1 4554966 D 395960 CDS YP_001993213.1 192292608 6411926 4555690..4556568 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bbt:BBta_7078 high-affinity branched-chain amino acid transport system permease protein LivH; inner-membrane translocator 4556568 6411926 Rpal_4242 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001993213.1 4555690 D 395960 CDS YP_001993214.1 192292609 6411927 4556571..4557590 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bra:BRADO0976 high-affinity branched-chain amino acid transport system permease protein LivM (ABC superfamily, membrane); inner-membrane translocator 4557590 6411927 Rpal_4243 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001993214.1 4556571 D 395960 CDS YP_001993215.1 192292610 6411928 4557789..4559024 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO0975 ABC-type branched-chain amino acid transporter periplasmic binding protein; branched-chain amino acid ABC transporter periplasmic protein 4559024 6411928 Rpal_4244 Rhodopseudomonas palustris TIE-1 branched-chain amino acid ABC transporter periplasmic protein YP_001993215.1 4557789 D 395960 CDS YP_001993216.1 192292611 6411929 4559205..4560437 1 NC_011004.1 KEGG: bja:blr7827 ABC transporter substrate-binding protein; ABC transporter substrate-binding protein 4560437 6411929 Rpal_4245 Rhodopseudomonas palustris TIE-1 ABC transporter substrate-binding protein YP_001993216.1 4559205 D 395960 CDS YP_001993217.1 192292612 6411930 4560785..4562014 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: bbt:BBta_7081 ABC-type branched-chain amino acid transporter periplasmic binding protein; branched-chain amino acid ABC transporter periplasmic protein 4562014 6411930 Rpal_4246 Rhodopseudomonas palustris TIE-1 branched-chain amino acid ABC transporter periplasmic protein YP_001993217.1 4560785 D 395960 CDS YP_001993218.1 192292613 6411931 complement(4562139..4562639) 1 NC_011004.1 PFAM: protein of unknown function DUF892; KEGG: nha:Nham_2670 protein of unknown function DUF892; hypothetical protein 4562639 6411931 Rpal_4247 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993218.1 4562139 R 395960 CDS YP_001993219.1 192292614 6411932 4562884..4563930 1 NC_011004.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: bra:BRADO6358 divalent cation transporter CorA-like; Mg2 transporter protein CorA family protein 4563930 6411932 Rpal_4248 Rhodopseudomonas palustris TIE-1 Mg2 transporter protein CorA family protein YP_001993219.1 4562884 D 395960 CDS YP_001993220.1 192292615 6411933 4564119..4566131 1 NC_011004.1 PFAM: carbohydrate-selective porin OprB; KEGG: bbt:BBta_3415 outer membrane protein of unknown function; carbohydrate-selective porin OprB 4566131 6411933 Rpal_4249 Rhodopseudomonas palustris TIE-1 carbohydrate-selective porin OprB YP_001993220.1 4564119 D 395960 CDS YP_001993221.1 192292616 6411934 complement(4566392..4567564) 1 NC_011004.1 KEGG: nha:Nham_2671 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 4567564 6411934 Rpal_4250 Rhodopseudomonas palustris TIE-1 amidohydrolase YP_001993221.1 4566392 R 395960 CDS YP_001993222.1 192292617 6411935 4567689..4569308 1 NC_011004.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bbt:BBta_2981 GMC-type oxidoreductase; glucose-methanol-choline oxidoreductase 4569308 6411935 Rpal_4251 Rhodopseudomonas palustris TIE-1 glucose-methanol-choline oxidoreductase YP_001993222.1 4567689 D 395960 CDS YP_001993223.1 192292618 6411936 4569308..4570210 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: olu:OSTLU_86220 predicted protein; alpha/beta hydrolase fold protein 4570210 6411936 Rpal_4252 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001993223.1 4569308 D 395960 CDS YP_001993224.1 192292619 6411937 complement(4570235..4571626) 1 NC_011004.1 PFAM: aminotransferase class-III; KEGG: bra:BRADO2635 aminotransferase; ornithine aminotransferase; class III aminotransferase 4571626 6411937 Rpal_4253 Rhodopseudomonas palustris TIE-1 class III aminotransferase YP_001993224.1 4570235 R 395960 CDS YP_001993225.1 192292620 6411938 complement(4571957..4574563) 1 NC_011004.1 TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: bja:blr3008 hypothetical protein; hopanoid biosynthesis associated RND transporter like protein HpnN 4574563 6411938 Rpal_4254 Rhodopseudomonas palustris TIE-1 hopanoid biosynthesis associated RND transporter like protein HpnN YP_001993225.1 4571957 R 395960 CDS YP_001993226.1 192292621 6411939 4574876..4575820 1 NC_011004.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4575820 ispH 6411939 ispH Rhodopseudomonas palustris TIE-1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_001993226.1 4574876 D 395960 CDS YP_001993227.1 192292622 6411940 4575860..4577020 1 NC_011004.1 TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: radical SAM domain protein; KEGG: bja:bll3006 hypothetical protein; hopanoid biosynthesis associated radical SAM protein HpnH 4577020 6411940 Rpal_4256 Rhodopseudomonas palustris TIE-1 hopanoid biosynthesis associated radical SAM protein HpnH YP_001993227.1 4575860 D 395960 CDS YP_001993228.1 192292623 6411941 complement(4577096..4578100) 1 NC_011004.1 TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: gdi:GDI3819 phosphate-binding periplasmic protein precursor; phosphate ABC transporter substrate-binding protein 4578100 6411941 Rpal_4257 Rhodopseudomonas palustris TIE-1 phosphate ABC transporter substrate-binding protein YP_001993228.1 4577096 R 395960 CDS YP_001993229.1 192292624 6411942 complement(4578134..4579378) 1 NC_011004.1 TIGRFAM: phosphonoacetate hydrolase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: bbr:BB1010 phosphonoacetate hydrolase; phosphonoacetate hydrolase 4579378 6411942 Rpal_4258 Rhodopseudomonas palustris TIE-1 phosphonoacetate hydrolase YP_001993229.1 4578134 R 395960 CDS YP_001993230.1 192292625 6411943 4579536..4580426 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B0837 transcriptional regulator of phosphonate operon,LysR-family; LysR family transcriptional regulator 4580426 6411943 Rpal_4259 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001993230.1 4579536 D 395960 CDS YP_001993231.1 192292626 6411944 complement(4580517..4581260) 1 NC_011004.1 TIGRFAM: hopanoid-associated phosphorylase; KEGG: nha:Nham_2681 hypothetical protein; hypothetical protein 4581260 6411944 Rpal_4260 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993231.1 4580517 R 395960 CDS YP_001993232.1 192292627 6411945 complement(4581257..4583218) 1 NC_011004.1 TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: bja:blr3004 squalene-hopene cyclase; squalene-hopene cyclase 4583218 6411945 Rpal_4261 Rhodopseudomonas palustris TIE-1 squalene-hopene cyclase YP_001993232.1 4581257 R 395960 CDS YP_001993233.1 192292628 6411946 complement(4583252..4584508) 1 NC_011004.1 TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; KEGG: bbt:BBta_2968 phytoene dehydrogenase; squalene-associated FAD-dependent desaturase 4584508 6411946 Rpal_4262 Rhodopseudomonas palustris TIE-1 squalene-associated FAD-dependent desaturase YP_001993233.1 4583252 R 395960 CDS YP_001993234.1 192292629 6411947 complement(4584508..4585347) 1 NC_011004.1 TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: bja:blr3002 phytoene synthase; squalene synthase 4585347 6411947 Rpal_4263 Rhodopseudomonas palustris TIE-1 squalene synthase YP_001993234.1 4584508 R 395960 CDS YP_001993235.1 192292630 6411948 complement(4585344..4586222) 1 NC_011004.1 TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: bja:blr3001 hypothetical protein; squalene synthase 4586222 6411948 Rpal_4264 Rhodopseudomonas palustris TIE-1 squalene synthase YP_001993235.1 4585344 R 395960 CDS YP_001993236.1 192292631 6411949 complement(4586427..4586666) 1 NC_011004.1 KEGG: nwi:Nwi_2273 hypothetical protein; hypothetical protein 4586666 6411949 Rpal_4265 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993236.1 4586427 R 395960 CDS YP_001993237.1 192292632 6411950 4587056..4587559 1 NC_011004.1 KEGG: bra:BRADO2625 hypothetical protein; hypothetical protein 4587559 6411950 Rpal_4266 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993237.1 4587056 D 395960 CDS YP_001993238.1 192292633 6411951 complement(4587655..4590024) 1 NC_011004.1 KEGG: nha:Nham_2688 RND superfamily transporter; RND superfamily transporter 4590024 6411951 Rpal_4267 Rhodopseudomonas palustris TIE-1 RND superfamily transporter YP_001993238.1 4587655 R 395960 CDS YP_001993239.1 192292634 6411952 complement(4590232..4590999) 1 NC_011004.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 4590999 6411952 Rpal_4268 Rhodopseudomonas palustris TIE-1 ethanolamine ammonia-lyase small subunit YP_001993239.1 4590232 R 395960 CDS YP_001993240.1 192292635 6411953 complement(4591007..4592590) 1 NC_011004.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bja:blr2995 hypothetical protein; radical SAM domain-containing protein 4592590 6411953 Rpal_4269 Rhodopseudomonas palustris TIE-1 radical SAM domain-containing protein YP_001993240.1 4591007 R 395960 CDS YP_001993241.1 192292636 6411954 complement(4592818..4594200) 1 NC_011004.1 PFAM: ethanolamine ammonia lyase large subunit; KEGG: bja:blr2994 ethanolamine ammonia-lyase heavy chain; ethanolamine ammonia lyase large subunit 4594200 6411954 Rpal_4270 Rhodopseudomonas palustris TIE-1 ethanolamine ammonia lyase large subunit YP_001993241.1 4592818 R 395960 CDS YP_001993242.1 192292637 6411955 complement(4594262..4595965) 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:bll0327 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4595965 6411955 Rpal_4271 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001993242.1 4594262 R 395960 CDS YP_001993243.1 192292638 6411956 complement(4596018..4596473) 1 NC_011004.1 PFAM: Cache type 2 domain protein; KEGG: har:HEAR0017 methyl-accepting chemotaxis sensory transducer; Cache type 2 domain-containing protein 4596473 6411956 Rpal_4272 Rhodopseudomonas palustris TIE-1 Cache type 2 domain-containing protein YP_001993243.1 4596018 R 395960 CDS YP_001993244.1 192292639 6411957 complement(4596676..4597554) 1 NC_011004.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bra:BRADO2603 hypothetical protein; transglutaminase domain-containing protein 4597554 6411957 Rpal_4273 Rhodopseudomonas palustris TIE-1 transglutaminase domain-containing protein YP_001993244.1 4596676 R 395960 CDS YP_001993245.1 192292640 6411958 complement(4597551..4600052) 1 NC_011004.1 PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: bbt:BBta_2948 hypothetical protein; hypothetical protein 4600052 6411958 Rpal_4274 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993245.1 4597551 R 395960 CDS YP_001993246.1 192292641 6411959 complement(4600078..4603419) 1 NC_011004.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bra:BRADO2601 hypothetical protein; transglutaminase domain-containing protein 4603419 6411959 Rpal_4275 Rhodopseudomonas palustris TIE-1 transglutaminase domain-containing protein YP_001993246.1 4600078 R 395960 CDS YP_001993247.1 192292642 6411960 complement(4603725..4604501) 1 NC_011004.1 PFAM: HpcH/HpaI aldolase; KEGG: bra:BRADO2598 aldolase; HpcH/HpaI aldolase 4604501 6411960 Rpal_4276 Rhodopseudomonas palustris TIE-1 HpcH/HpaI aldolase YP_001993247.1 4603725 R 395960 CDS YP_001993248.1 192292643 6411961 complement(4604685..4605770) 1 NC_011004.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: bra:BRADO2597 hypothetical oxidoreductase; malate/L-lactate dehydrogenase 4605770 6411961 Rpal_4277 Rhodopseudomonas palustris TIE-1 malate/L-lactate dehydrogenase YP_001993248.1 4604685 R 395960 CDS YP_001993249.1 192292644 6411962 complement(4605811..4606350) 1 NC_011004.1 TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; KEGG: bja:blr2971 transcriptional regulatory protein; MarR family transcriptional regulator 4606350 6411962 Rpal_4278 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001993249.1 4605811 R 395960 CDS YP_001993250.1 192292645 6411963 4606596..4607402 1 NC_011004.1 KEGG: bja:bll2970 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 4607402 6411963 Rpal_4279 Rhodopseudomonas palustris TIE-1 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YP_001993250.1 4606596 D 395960 CDS YP_001993251.1 192292646 6411964 4607423..4607821 1 NC_011004.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: bbt:BBta_2940 5-carboxymethyl-2-hydroxymuconate isomerase, HpcD-like protein; 5-carboxymethyl-2-hydroxymuconate isomerase 4607821 6411964 Rpal_4280 Rhodopseudomonas palustris TIE-1 5-carboxymethyl-2-hydroxymuconate isomerase YP_001993251.1 4607423 D 395960 CDS YP_001993252.1 192292647 6411965 4607814..4609355 1 NC_011004.1 TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bja:bll2968 NAD-dependent succinate aldehyde dehydrogenase; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 4609355 6411965 Rpal_4281 Rhodopseudomonas palustris TIE-1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_001993252.1 4607814 D 395960 CDS YP_001993253.1 192292648 6411966 4609586..4610506 1 NC_011004.1 TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll2967 metapyrocatechase; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 4610506 6411966 Rpal_4282 Rhodopseudomonas palustris TIE-1 3,4-dihydroxyphenylacetate 2,3-dioxygenase YP_001993253.1 4609586 D 395960 CDS YP_001993254.1 192292649 6411967 4610657..4611529 1 NC_011004.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bra:BRADO2592 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), bifunctional protein isomerase/decarboxylase HpcE-like; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 4611529 6411967 Rpal_4283 Rhodopseudomonas palustris TIE-1 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase YP_001993254.1 4610657 D 395960 CDS YP_001993255.1 192292650 6411968 4611558..4613183 1 NC_011004.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bbt:BBta_2937 hypothetical protein; hypothetical protein 4613183 6411968 Rpal_4284 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993255.1 4611558 D 395960 CDS YP_001993256.1 192292651 6411969 complement(4613374..4614462) 1 NC_011004.1 TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding protein; KEGG: bja:blr2895 ferredoxin reductase electron transfer component protein; phenylacetate-CoA oxygenase/reductase subunit PaaK 4614462 6411969 Rpal_4285 Rhodopseudomonas palustris TIE-1 phenylacetate-CoA oxygenase/reductase subunit PaaK YP_001993256.1 4613374 R 395960 CDS YP_001993257.1 192292652 6411970 complement(4614471..4614974) 1 NC_011004.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: bbt:BBta_2868 phenylacetic acid degradation protein PaaD; phenylacetate-CoA oxygenase subunit PaaJ 4614974 6411970 Rpal_4286 Rhodopseudomonas palustris TIE-1 phenylacetate-CoA oxygenase subunit PaaJ YP_001993257.1 4614471 R 395960 CDS YP_001993258.1 192292653 6411971 complement(4614968..4615744) 1 NC_011004.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: bbt:BBta_2867 phenylacetic acid degradation protein PaaC; phenylacetate-CoA oxygenase subunit PaaI 4615744 6411971 Rpal_4287 Rhodopseudomonas palustris TIE-1 phenylacetate-CoA oxygenase subunit PaaI YP_001993258.1 4614968 R 395960 CDS YP_001993259.1 192292654 6411972 complement(4615860..4616147) 1 NC_011004.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 4616147 paaB 6411972 paaB Rhodopseudomonas palustris TIE-1 phenylacetate-CoA oxygenase subunit PaaB YP_001993259.1 4615860 R 395960 CDS YP_001993260.1 192292655 6411973 complement(4616321..4617307) 1 NC_011004.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 4617307 paaA 6411973 paaA Rhodopseudomonas palustris TIE-1 phenylacetate-CoA oxygenase subunit PaaA YP_001993260.1 4616321 R 395960 CDS YP_001993261.1 192292656 6411974 4617430..4618110 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: xau:Xaut_0894 transcriptional regulator, TetR family; TetR family transcriptional regulator 4618110 6411974 Rpal_4290 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001993261.1 4617430 D 395960 CDS YP_001993262.1 192292657 6411975 complement(4618344..4618847) 1 NC_011004.1 TIGRFAM: phasin; KEGG: bra:BRADO2517 hypothetical protein; phasin 4618847 6411975 Rpal_4291 Rhodopseudomonas palustris TIE-1 phasin YP_001993262.1 4618344 R 395960 CDS YP_001993263.1 192292658 6411976 complement(4619059..4619379) 1 NC_011004.1 KEGG: bbt:BBta_2862 hypothetical protein; hypothetical protein 4619379 6411976 Rpal_4292 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993263.1 4619059 R 395960 CDS YP_001993264.1 192292659 6411977 complement(4619428..4620219) 1 NC_011004.1 PFAM: PGAP1 family protein; KEGG: bja:blr2879 hypothetical protein; PGAP1 family protein 4620219 6411977 Rpal_4293 Rhodopseudomonas palustris TIE-1 PGAP1 family protein YP_001993264.1 4619428 R 395960 CDS YP_001993265.1 192292660 6411978 complement(4620238..4620492) 1 NC_011004.1 KEGG: bja:bsr2878 hypothetical protein; hypothetical protein 4620492 6411978 Rpal_4294 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993265.1 4620238 R 395960 CDS YP_001993266.1 192292661 6411979 complement(4620583..4621836) 1 NC_011004.1 PFAM: FAD dependent oxidoreductase; KEGG: nha:Nham_2698 D-amino-acid dehydrogenase; FAD dependent oxidoreductase 4621836 6411979 Rpal_4295 Rhodopseudomonas palustris TIE-1 FAD dependent oxidoreductase YP_001993266.1 4620583 R 395960 CDS YP_001993267.1 192292662 6411980 complement(4622116..4625220) 1 NC_011004.1 PFAM: acriflavin resistance protein; KEGG: nha:Nham_2699 acriflavin resistance protein; acriflavin resistance protein 4625220 6411980 Rpal_4296 Rhodopseudomonas palustris TIE-1 acriflavin resistance protein YP_001993267.1 4622116 R 395960 CDS YP_001993268.1 192292663 6411981 complement(4625362..4626555) 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: nha:Nham_2700 secretion protein HlyD; RND family efflux transporter MFP subunit 4626555 6411981 Rpal_4297 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001993268.1 4625362 R 395960 CDS YP_001993269.1 192292664 6411982 complement(4626557..4627258) 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: nha:Nham_2701 transcriptional regulator, TetR family; TetR family transcriptional regulator 4627258 6411982 Rpal_4298 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001993269.1 4626557 R 395960 CDS YP_001993270.1 192292665 6411983 4627478..4628698 1 NC_011004.1 PFAM: cytochrome P450; KEGG: bja:bll2856 probable cytochrome P450; cytochrome P450 4628698 6411983 Rpal_4299 Rhodopseudomonas palustris TIE-1 cytochrome P450 YP_001993270.1 4627478 D 395960 CDS YP_001993271.1 192292666 6411984 4628869..4630428 1 NC_011004.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr2248 hypothetical protein; hypothetical protein 4630428 6411984 Rpal_4300 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993271.1 4628869 D 395960 CDS YP_001993272.1 192292667 6411985 complement(4630440..4631312) 1 NC_011004.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bbt:BBta_2840 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 4631312 6411985 Rpal_4301 Rhodopseudomonas palustris TIE-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001993272.1 4630440 R 395960 CDS YP_001993273.1 192292668 6411986 4631647..4632540 1 NC_011004.1 PFAM: PfkB domain protein; KEGG: bra:BRADO2493 sugar kinase; PfkB domain-containing protein 4632540 6411986 Rpal_4302 Rhodopseudomonas palustris TIE-1 PfkB domain-containing protein YP_001993273.1 4631647 D 395960 CDS YP_001993274.1 192292669 6411987 complement(4632644..4633861) 1 NC_011004.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nha:Nham_2703 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4633861 6411987 Rpal_4303 Rhodopseudomonas palustris TIE-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001993274.1 4632644 R 395960 CDS YP_001993275.1 192292670 6411988 complement(4633986..4635470) 1 NC_011004.1 KEGG: bja:bll5638 hypothetical protein; hypothetical protein 4635470 6411988 Rpal_4304 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993275.1 4633986 R 395960 CDS YP_001993276.1 192292671 6411989 complement(4635490..4636650) 1 NC_011004.1 PFAM: glycosyl transferase family 2; GtrA family protein; KEGG: bbt:BBta_5297 dolichol-phosphate mannosyltransferase; family 2 glycosyl transferase 4636650 6411989 Rpal_4305 Rhodopseudomonas palustris TIE-1 family 2 glycosyl transferase YP_001993276.1 4635490 R 395960 CDS YP_001993277.1 192292672 6411990 4636877..4637683 1 NC_011004.1 PFAM: protein of unknown function DUF72; KEGG: bra:BRADO2875 conserved hypothetical protein (DUF72); hypothetical protein 4637683 6411990 Rpal_4306 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993277.1 4636877 D 395960 CDS YP_001993278.1 192292673 6411991 4637829..4638086 1 NC_011004.1 hypothetical protein 4638086 6411991 Rpal_4307 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993278.1 4637829 D 395960 CDS YP_001993279.1 192292674 6411992 4638184..4639086 1 NC_011004.1 KEGG: nha:Nham_2600 hypothetical protein; hypothetical protein 4639086 6411992 Rpal_4308 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993279.1 4638184 D 395960 CDS YP_001993280.1 192292675 6411993 complement(4639097..4639699) 1 NC_011004.1 KEGG: bja:blr2820 hypothetical protein; hypothetical protein 4639699 6411993 Rpal_4309 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993280.1 4639097 R 395960 CDS YP_001993281.1 192292676 6411994 complement(4640025..4641197) 1 NC_011004.1 PFAM: ABC transporter; KEGG: bbt:BBta_5303 ABC transporter (fused ATP-binding and permease components); ABC transporter 4641197 6411994 Rpal_4310 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993281.1 4640025 R 395960 CDS YP_001993282.1 192292677 6411995 complement(4641194..4642147) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll5649 ABC transporter ATP-binding protein; ABC transporter 4642147 6411995 Rpal_4311 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993282.1 4641194 R 395960 CDS YP_001993283.1 192292678 6411996 complement(4642144..4642947) 1 NC_011004.1 KEGG: bja:bll5650 hypothetical protein; hypothetical protein 4642947 6411996 Rpal_4312 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993283.1 4642144 R 395960 CDS YP_001993284.1 192292679 6411997 complement(4642944..4643660) 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: nha:Nham_0716 transcriptional regulator, TetR family; TetR family transcriptional regulator 4643660 6411997 Rpal_4313 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001993284.1 4642944 R 395960 CDS YP_001993285.1 192292680 6411998 complement(4643731..4644870) 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sme:SMa2301 response regulator; diguanylate cyclase 4644870 6411998 Rpal_4314 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001993285.1 4643731 R 395960 CDS YP_001993286.1 192292681 6411999 4645076..4645252 1 NC_011004.1 KEGG: bra:BRADO3443 hypothetical protein; hypothetical protein 4645252 6411999 Rpal_4315 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993286.1 4645076 D 395960 CDS YP_001993287.1 192292682 6412000 complement(4645258..4645668) 1 NC_011004.1 KEGG: bja:bll5656 hypothetical protein; hypothetical protein 4645668 6412000 Rpal_4316 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993287.1 4645258 R 395960 CDS YP_001993288.1 192292683 6412001 complement(4645730..4646113) 1 NC_011004.1 KEGG: bja:bll5657 hypothetical protein; hypothetical protein 4646113 6412001 Rpal_4317 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993288.1 4645730 R 395960 CDS YP_001993289.1 192292684 6412002 complement(4646223..4646975) 1 NC_011004.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:bll3036 enoyl CoA hydratase; Enoyl-CoA hydratase/isomerase 4646975 6412002 Rpal_4318 Rhodopseudomonas palustris TIE-1 Enoyl-CoA hydratase/isomerase YP_001993289.1 4646223 R 395960 CDS YP_001993290.1 192292685 6412003 4647075..4647905 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: swi:Swit_2160 transcriptional regulator, LysR family; LysR family transcriptional regulator 4647905 6412003 Rpal_4319 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001993290.1 4647075 D 395960 CDS YP_001993291.1 192292686 6412004 complement(4647917..4649518) 1 NC_011004.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; molybdopterin binding domain; KEGG: bra:BRADO2863 conserved hypothetical protein; molybdopterin binding protein with a nucleotide-diphospho-sugar transferase domain; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 4649518 6412004 Rpal_4320 Rhodopseudomonas palustris TIE-1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_001993291.1 4647917 R 395960 CDS YP_001993292.1 192292687 6412005 complement(4649515..4650216) 1 NC_011004.1 KEGG: bbt:BBta_5313 hypothetical protein; hypothetical protein 4650216 6412005 Rpal_4321 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993292.1 4649515 R 395960 CDS YP_001993293.1 192292688 6412006 complement(4650247..4650573) 1 NC_011004.1 PFAM: protein of unknown function DUF182; KEGG: bja:bll5661 hypothetical protein; hypothetical protein 4650573 6412006 Rpal_4322 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993293.1 4650247 R 395960 CDS YP_001993294.1 192292689 6412007 complement(4650612..4651829) 1 NC_011004.1 PFAM: VWA containing CoxE family protein; KEGG: bja:bll5662 hypothetical protein; VWA containing CoxE family protein 4651829 6412007 Rpal_4323 Rhodopseudomonas palustris TIE-1 VWA containing CoxE family protein YP_001993294.1 4650612 R 395960 CDS YP_001993295.1 192292690 6412008 complement(4652154..4653056) 1 NC_011004.1 PFAM: ATPase AAA; SMART: ATPase AAA; KEGG: bbt:BBta_5316 ATPase, AAA family; ATPase AAA 4653056 6412008 Rpal_4324 Rhodopseudomonas palustris TIE-1 ATPase AAA YP_001993295.1 4652154 R 395960 CDS YP_001993296.1 192292691 6412009 complement(4653076..4653882) 1 NC_011004.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: bja:bll5664 carbon monoxide dehydrogenase medium subunit; molybdopterin dehydrogenase 4653882 6412009 Rpal_4325 Rhodopseudomonas palustris TIE-1 molybdopterin dehydrogenase YP_001993296.1 4653076 R 395960 CDS YP_001993297.1 192292692 6412010 complement(4653958..4654443) 1 NC_011004.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bra:BRADO2857 carbon-monoxide dehydrogenase small subunit, CoxS-like protein; (2Fe-2S)-binding domain-containing protein 4654443 6412010 Rpal_4326 Rhodopseudomonas palustris TIE-1 (2Fe-2S)-binding domain-containing protein YP_001993297.1 4653958 R 395960 CDS YP_001993298.1 192292693 6412011 complement(4654619..4655083) 1 NC_011004.1 PFAM: cyclase/dehydrase; carbon monoxide dehydrogenase subunit G; KEGG: bja:bll5666 hypothetical protein; carbon monoxide dehydrogenase subunit G 4655083 6412011 Rpal_4327 Rhodopseudomonas palustris TIE-1 carbon monoxide dehydrogenase subunit G YP_001993298.1 4654619 R 395960 CDS YP_001993299.1 192292694 6412012 complement(4655276..4655803) 1 NC_011004.1 KEGG: nha:Nham_2610 hypothetical protein; hypothetical protein 4655803 6412012 Rpal_4328 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993299.1 4655276 R 395960 CDS YP_001993300.1 192292695 6412013 complement(4656103..4656297) 1 NC_011004.1 KEGG: ncr:NCU04059 hypothetical protein; hypothetical protein 4656297 6412013 Rpal_4329 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993300.1 4656103 R 395960 CDS YP_001993301.1 192292696 6412014 4656637..4657554 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bbt:BBta_5323 high-affinity branched-chain amino acid ABC transporter (permease protein); inner-membrane translocator 4657554 6412014 Rpal_4330 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001993301.1 4656637 D 395960 CDS YP_001993302.1 192292697 6412015 4657567..4658898 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bbt:BBta_5324 high-affinity branched-chain amino acid ABC transporter (permease protein); inner-membrane translocator 4658898 6412015 Rpal_4331 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001993302.1 4657567 D 395960 CDS YP_001993303.1 192292698 6412016 4658895..4659731 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nwi:Nwi_2211 ABC transporter ATPase subunit; ABC transporter 4659731 6412016 Rpal_4332 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993303.1 4658895 D 395960 CDS YP_001993304.1 192292699 6412017 4659868..4660608 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_5326 high-affinity branched-chain amino acid ABC transporter (ATP-binding protein); ABC transporter 4660608 6412017 Rpal_4333 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993304.1 4659868 D 395960 CDS YP_001993305.1 192292700 6412018 4660787..4661893 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: bbt:BBta_5327 high-affinity branched-chain amino acid ABC transporter (substrate-binding protein); branched-chain amino acid ABC transporter substrate-binding protein 4661893 6412018 Rpal_4334 Rhodopseudomonas palustris TIE-1 branched-chain amino acid ABC transporter substrate-binding protein YP_001993305.1 4660787 D 395960 CDS YP_001993306.1 192292701 6412019 complement(4662106..4662393) 1 NC_011004.1 PFAM: excinuclease ABC subunit C; KEGG: nha:Nham_1409 excinuclease ABC, C subunit-like; excinuclease ABC subunit C 4662393 6412019 Rpal_4335 Rhodopseudomonas palustris TIE-1 excinuclease ABC subunit C YP_001993306.1 4662106 R 395960 CDS YP_001993307.1 192292702 6412020 complement(4662464..4663633) 1 NC_011004.1 PFAM: Integrase catalytic region; KEGG: sme:SMc04250 transposase protein; integrase catalytic subunit 4663633 6412020 Rpal_4336 Rhodopseudomonas palustris TIE-1 integrase catalytic subunit YP_001993307.1 4662464 R 395960 CDS YP_001993308.1 192292703 6412021 complement(4663938..4664672) 1 NC_011004.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: bja:blr2789 cytochrome C-type biogenesis protein; cytochrome c biogenesis protein transmembrane protein 4664672 6412021 Rpal_4337 Rhodopseudomonas palustris TIE-1 cytochrome c biogenesis protein transmembrane protein YP_001993308.1 4663938 R 395960 CDS YP_001993309.1 192292704 6412022 4664819..4665823 1 NC_011004.1 PFAM: peptidase S58 DmpA; KEGG: nha:Nham_2617 peptidase S58, DmpA; peptidase S58 DmpA 4665823 6412022 Rpal_4338 Rhodopseudomonas palustris TIE-1 peptidase S58 DmpA YP_001993309.1 4664819 D 395960 CDS YP_001993310.1 192292705 6412023 complement(4665964..4666734) 1 NC_011004.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: bra:BRADO2843 conserved hypothetical protein; signal peptide; calcium-binding domain (EF-hand); signal transduction protein with EFhand domain 4666734 6412023 Rpal_4339 Rhodopseudomonas palustris TIE-1 signal transduction protein with EFhand domain YP_001993310.1 4665964 R 395960 CDS YP_001993311.1 192292706 6412024 4667004..4667702 1 NC_011004.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: bja:blr5680 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 4667702 6412024 Rpal_4340 Rhodopseudomonas palustris TIE-1 ribulose-phosphate 3-epimerase YP_001993311.1 4667004 D 395960 CDS YP_001993312.1 192292707 6412025 complement(4667699..4668337) 1 NC_011004.1 hypothetical protein 4668337 6412025 Rpal_4341 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993312.1 4667699 R 395960 CDS YP_001993313.1 192292708 6412026 4668607..4669776 1 NC_011004.1 PFAM: Integrase catalytic region; KEGG: sme:SMc04250 transposase protein; integrase catalytic subunit 4669776 6412026 Rpal_4342 Rhodopseudomonas palustris TIE-1 integrase catalytic subunit YP_001993313.1 4668607 D 395960 CDS YP_001993314.1 192292709 6412027 4670249..4671556 1 NC_011004.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 4671556 6412027 Rpal_4343 Rhodopseudomonas palustris TIE-1 adenylosuccinate lyase YP_001993314.1 4670249 D 395960 CDS YP_001993315.1 192292710 6412028 complement(4671707..4672408) 1 NC_011004.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 4672408 6412028 Rpal_4344 Rhodopseudomonas palustris TIE-1 phosphoribosylformylglycinamidine synthase I YP_001993315.1 4671707 R 395960 CDS YP_001993316.1 192292711 6412029 complement(4672465..4672704) 1 NC_011004.1 KEGG: bra:BRADO2778 hypothetical protein; hypothetical protein 4672704 6412029 Rpal_4345 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993316.1 4672465 R 395960 CDS YP_001993317.1 192292712 6412030 complement(4672728..4672973) 1 NC_011004.1 With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway; phosphoribosylformylglycinamidine synthase PurS 4672973 6412030 Rpal_4346 Rhodopseudomonas palustris TIE-1 phosphoribosylformylglycinamidine synthase PurS YP_001993317.1 4672728 R 395960 CDS YP_001993318.1 192292713 6412031 complement(4673156..4673953) 1 NC_011004.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 4673953 6412031 Rpal_4347 Rhodopseudomonas palustris TIE-1 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001993318.1 4673156 R 395960 CDS YP_001993319.1 192292714 6412032 4674222..4674545 1 NC_011004.1 PFAM: protein of unknown function DUF1476; KEGG: nwi:Nwi_1303 protein of unknown function DUF1476; hypothetical protein 4674545 6412032 Rpal_4348 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993319.1 4674222 D 395960 CDS YP_001993320.1 192292715 6412033 4675117..4675791 1 NC_011004.1 KEGG: nha:Nham_1630 hypothetical protein; hypothetical protein 4675791 6412033 Rpal_4349 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993320.1 4675117 D 395960 CDS YP_001993321.1 192292716 6412034 complement(4676145..4676495) 1 NC_011004.1 KEGG: mar:MAE_29420 transcriptional regulator; transcriptional regulator 4676495 6412034 Rpal_4350 Rhodopseudomonas palustris TIE-1 transcriptional regulator YP_001993321.1 4676145 R 395960 CDS YP_001993322.1 192292717 6412035 complement(4676476..4676859) 1 NC_011004.1 PFAM: protein of unknown function DUF891; KEGG: mar:MAE_29280 hypothetical protein; hypothetical protein 4676859 6412035 Rpal_4351 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993322.1 4676476 R 395960 CDS YP_001993323.1 192292718 6412036 complement(4676968..4677786) 1 NC_011004.1 KEGG: nha:Nham_2180 hypothetical protein; hypothetical protein 4677786 6412036 Rpal_4352 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993323.1 4676968 R 395960 CDS YP_001993324.1 192292719 6412037 complement(4678103..4678486) 1 NC_011004.1 KEGG: bbt:BBta_5411 hypothetical protein; hypothetical protein 4678486 6412037 Rpal_4353 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993324.1 4678103 R 395960 CDS YP_001993325.1 192292720 6412038 4678782..4679021 1 NC_011004.1 KEGG: maq:Maqu_0204 hypothetical protein; hypothetical protein 4679021 6412038 Rpal_4354 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993325.1 4678782 D 395960 CDS YP_001993326.1 192292721 6412039 complement(4679620..4680234) 1 NC_011004.1 KEGG: xcv:XCVd0120 hypothetical protein; hypothetical protein 4680234 6412039 Rpal_4355 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993326.1 4679620 R 395960 CDS YP_001993327.1 192292722 6412040 complement(4680442..4680996) 1 NC_011004.1 KEGG: pol:Bpro_1213 hypothetical protein; hypothetical protein 4680996 6412040 Rpal_4356 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993327.1 4680442 R 395960 CDS YP_001993328.1 192292723 6412041 complement(4681067..4681549) 1 NC_011004.1 activates RNA polymerase to cleave back-tracked RNA during elongational pausing; transcription elongation factor regulatory protein 4681549 6412041 Rpal_4357 Rhodopseudomonas palustris TIE-1 transcription elongation factor regulatory protein YP_001993328.1 4681067 R 395960 CDS YP_001993329.1 192292724 6412042 complement(4681610..4682143) 1 NC_011004.1 KEGG: dge:Dgeo_1718 uracil-DNA glycosylase superfamily; uracil-DNA glycosylase superfamily 4682143 6412042 Rpal_4358 Rhodopseudomonas palustris TIE-1 uracil-DNA glycosylase superfamily YP_001993329.1 4681610 R 395960 CDS YP_001993330.1 192292725 6412043 complement(4682144..4682545) 1 NC_011004.1 KEGG: bbt:BBta_5701 hypothetical protein; hypothetical protein 4682545 6412043 Rpal_4359 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993330.1 4682144 R 395960 CDS YP_001993331.1 192292726 6412044 complement(4682617..4683633) 1 NC_011004.1 KEGG: azc:AZC_3914 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 4683633 6412044 Rpal_4360 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor-containing diguanylate cyclase YP_001993331.1 4682617 R 395960 CDS YP_001993332.1 192292727 6412045 complement(4683814..4685013) 1 NC_011004.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); protein of unknown function DUF559; KEGG: bja:bll5746 probable tRNA/rRNA methyltransferase; RNA methyltransferase 4685013 6412045 Rpal_4361 Rhodopseudomonas palustris TIE-1 RNA methyltransferase YP_001993332.1 4683814 R 395960 CDS YP_001993333.1 192292728 6412046 4685404..4686627 1 NC_011004.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 4686627 6412046 Rpal_4362 Rhodopseudomonas palustris TIE-1 isocitrate dehydrogenase YP_001993333.1 4685404 D 395960 CDS YP_001993334.1 192292729 6412047 4686758..4687090 1 NC_011004.1 PFAM: protein of unknown function UPF0060; KEGG: bbt:BBta_2302 transmembrane protein; hypothetical protein 4687090 6412047 Rpal_4363 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993334.1 4686758 D 395960 CDS YP_001993335.1 192292730 6412048 4687260..4688099 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bur:Bcep18194_B0671 transcriptional regulator, AraC family; AraC family transcriptional regulator 4688099 6412048 Rpal_4364 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001993335.1 4687260 D 395960 CDS YP_001993336.1 192292731 6412049 4688240..4690549 1 NC_011004.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_3498 outer membrane ferripyochelin receptor; TonB-dependent siderophore receptor 4690549 6412049 Rpal_4365 Rhodopseudomonas palustris TIE-1 TonB-dependent siderophore receptor YP_001993336.1 4688240 D 395960 CDS YP_001993337.1 192292732 6412050 4690570..4691100 1 NC_011004.1 hypothetical protein 4691100 6412050 Rpal_4366 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993337.1 4690570 D 395960 CDS YP_001993338.1 192292733 6412051 4691097..4692209 1 NC_011004.1 PFAM: PepSY-associated TM helix domain protein; KEGG: pfl:PFL_3499 PepSY-associated membrane protein; PepSY-associated TM helix domain-containing protein 4692209 6412051 Rpal_4367 Rhodopseudomonas palustris TIE-1 PepSY-associated TM helix domain-containing protein YP_001993338.1 4691097 D 395960 CDS YP_001993339.1 192292734 6412052 complement(4692239..4693990) 1 NC_011004.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pap:PSPA7_6319 probable potassium efflux transporter; potassium efflux system protein 4693990 6412052 Rpal_4368 Rhodopseudomonas palustris TIE-1 potassium efflux system protein YP_001993339.1 4692239 R 395960 CDS YP_001993340.1 192292735 6412053 4694156..4695934 1 NC_011004.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: cak:Caul_4668 sodium/hydrogen exchanger; sodium/hydrogen exchanger 4695934 6412053 Rpal_4369 Rhodopseudomonas palustris TIE-1 sodium/hydrogen exchanger YP_001993340.1 4694156 D 395960 CDS YP_001993341.1 192292736 6412054 4696164..4698122 1 NC_011004.1 PFAM: protein of unknown function UPF0118; KEGG: bra:BRADO5979 conserved hypothetical protein; membrane protein, membrane transport protein; hypothetical protein 4698122 6412054 Rpal_4370 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993341.1 4696164 D 395960 CDS YP_001993342.1 192292737 6412055 complement(4698219..4698980) 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mrd:Mrad2831_0666 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4698980 6412055 Rpal_4371 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001993342.1 4698219 R 395960 CDS YP_001993343.1 192292738 6412056 complement(4698982..4701651) 1 NC_011004.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 4701651 alaS 6412056 alaS Rhodopseudomonas palustris TIE-1 alanyl-tRNA synthetase YP_001993343.1 4698982 R 395960 CDS YP_001993344.1 192292739 6412057 4702104..4703252 1 NC_011004.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 4703252 gcvT 6412057 gcvT Rhodopseudomonas palustris TIE-1 glycine cleavage system aminomethyltransferase T YP_001993344.1 4702104 D 395960 CDS YP_001993345.1 192292740 6412058 4703262..4703627 1 NC_011004.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 4703627 6412058 Rpal_4374 Rhodopseudomonas palustris TIE-1 glycine cleavage system protein H YP_001993345.1 4703262 D 395960 CDS YP_001993346.1 192292741 6412059 4703795..4706701 1 NC_011004.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 4706701 6412059 Rpal_4375 Rhodopseudomonas palustris TIE-1 glycine dehydrogenase YP_001993346.1 4703795 D 395960 CDS YP_001993347.1 192292742 6412060 complement(4707147..4708238) 1 NC_011004.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 4708238 recA 6412060 recA Rhodopseudomonas palustris TIE-1 recombinase A YP_001993347.1 4707147 R 395960 CDS YP_001993348.1 192292743 6412061 complement(4708497..4710422) 1 NC_011004.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: bbt:BBta_3764 esterase/lipase/outer membrane autotransporter; outer membrane autotransporter barrel domain-containing protein 4710422 6412061 Rpal_4377 Rhodopseudomonas palustris TIE-1 outer membrane autotransporter barrel domain-containing protein YP_001993348.1 4708497 R 395960 CDS YP_001993349.1 192292744 6412062 4710940..4711170 1 NC_011004.1 KEGG: nha:Nham_4592 hypothetical protein; hypothetical protein 4711170 6412062 Rpal_4378 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993349.1 4710940 D 395960 CDS YP_001993350.1 192292745 6412063 complement(4711188..4711376) 1 NC_011004.1 hypothetical protein 4711376 6412063 Rpal_4379 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993350.1 4711188 R 395960 CDS YP_001993351.1 192292746 6412064 4711670..4711816 1 NC_011004.1 KEGG: bbt:BBta_2403 hypothetical protein; hypothetical protein 4711816 6412064 Rpal_4380 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993351.1 4711670 D 395960 CDS YP_001993352.1 192292747 6412065 4712199..4712585 1 NC_011004.1 KEGG: cel:W01B6.7 COLlagen; hypothetical protein 4712585 6412065 Rpal_4381 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993352.1 4712199 D 395960 CDS YP_001993353.1 192292748 6412066 4712843..4713019 1 NC_011004.1 KEGG: bbt:BBta_5457 hypothetical protein; hypothetical protein 4713019 6412066 Rpal_4382 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993353.1 4712843 D 395960 CDS YP_001993354.1 192292749 6412067 complement(4713095..4713760) 1 NC_011004.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: bja:bll2244 probable cAMP-regulatory protein; Crp/Fnr family transcriptional regulator 4713760 6412067 Rpal_4383 Rhodopseudomonas palustris TIE-1 Crp/Fnr family transcriptional regulator YP_001993354.1 4713095 R 395960 CDS YP_001993355.1 192292750 6412068 complement(4713921..4714187) 1 NC_011004.1 KEGG: nha:Nham_1522 hypothetical protein; hypothetical protein 4714187 6412068 Rpal_4384 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993355.1 4713921 R 395960 CDS YP_001993356.1 192292751 6412069 complement(4714228..4714356) 1 NC_011004.1 hypothetical protein 4714356 6412069 Rpal_4385 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993356.1 4714228 R 395960 CDS YP_001993357.1 192292752 6412070 4714485..4714946 1 NC_011004.1 PFAM: thioesterase superfamily protein; KEGG: bja:blr5765 hypothetical protein; thioesterase superfamily protein 4714946 6412070 Rpal_4386 Rhodopseudomonas palustris TIE-1 thioesterase superfamily protein YP_001993357.1 4714485 D 395960 CDS YP_001993358.1 192292753 6412071 complement(4715001..4716458) 1 NC_011004.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: nwi:Nwi_1274 peptidase C14, caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 4716458 6412071 Rpal_4387 Rhodopseudomonas palustris TIE-1 peptidase C14 caspase catalytic subunit p20 YP_001993358.1 4715001 R 395960 CDS YP_001993359.1 192292754 6412072 4716682..4717842 1 NC_011004.1 KEGG: nwi:Nwi_1273 hypothetical protein; hypothetical protein 4717842 6412072 Rpal_4388 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993359.1 4716682 D 395960 CDS YP_001993360.1 192292755 6412073 complement(4717843..4718508) 1 NC_011004.1 PFAM: DSBA oxidoreductase; KEGG: bbt:BBta_5468 hypothetical protein; DSBA oxidoreductase 4718508 6412073 Rpal_4389 Rhodopseudomonas palustris TIE-1 DSBA oxidoreductase YP_001993360.1 4717843 R 395960 CDS YP_001993361.1 192292756 6412074 complement(4718581..4719402) 1 NC_011004.1 PFAM: helix-turn-helix domain protein; KEGG: bja:bll5781 hypothetical protein; XRE family transcriptional regulator 4719402 6412074 Rpal_4390 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001993361.1 4718581 R 395960 CDS YP_001993362.1 192292757 6412075 4719538..4719951 1 NC_011004.1 KEGG: bja:blr5786 integral membrane protein; integral membrane protein 4719951 6412075 Rpal_4391 Rhodopseudomonas palustris TIE-1 integral membrane protein YP_001993362.1 4719538 D 395960 CDS YP_001993363.1 192292758 6412076 complement(4720074..4720811) 1 NC_011004.1 PFAM: nuclear protein SET; KEGG: bra:BRADO5005 histone-lysine N-methyltransferase with a SET domain; nuclear protein SET 4720811 6412076 Rpal_4392 Rhodopseudomonas palustris TIE-1 nuclear protein SET YP_001993363.1 4720074 R 395960 CDS YP_001993364.1 192292759 6412077 4720953..4721582 1 NC_011004.1 KEGG: bja:blr5788 hypothetical protein; hypothetical protein 4721582 6412077 Rpal_4393 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993364.1 4720953 D 395960 CDS YP_001993365.1 192292760 6412078 4721732..4722325 1 NC_011004.1 KEGG: bja:blr5793 hypothetical protein; hypothetical protein 4722325 6412078 Rpal_4394 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993365.1 4721732 D 395960 CDS YP_001993366.1 192292761 6412079 complement(4722333..4723043) 1 NC_011004.1 KEGG: sus:Acid_6846 NHL repeat containing protein; NHL repeat containing protein 4723043 6412079 Rpal_4395 Rhodopseudomonas palustris TIE-1 NHL repeat containing protein YP_001993366.1 4722333 R 395960 CDS YP_001993367.1 192292762 6412080 4723303..4723599 1 NC_011004.1 KEGG: bbt:BBta_5480 exported protein of unknown function; hypothetical protein 4723599 6412080 Rpal_4396 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993367.1 4723303 D 395960 CDS YP_001993368.1 192292763 6412081 complement(4723791..4725446) 1 NC_011004.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: bja:bll5796 fumarate hydratase class I; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha 4725446 6412081 Rpal_4397 Rhodopseudomonas palustris TIE-1 Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha YP_001993368.1 4723791 R 395960 CDS YP_001993369.1 192292764 6412082 complement(4725553..4725837) 1 NC_011004.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mrd:Mrad2831_6061 addiction module toxin, RelE/StbE family; RelE/StbE family addiction module toxin 4725837 6412082 Rpal_4398 Rhodopseudomonas palustris TIE-1 RelE/StbE family addiction module toxin YP_001993369.1 4725553 R 395960 CDS YP_001993370.1 192292765 6412083 complement(4725834..4726067) 1 NC_011004.1 KEGG: xau:Xaut_3830 hypothetical protein; hypothetical protein 4726067 6412083 Rpal_4399 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993370.1 4725834 R 395960 CDS YP_001993371.1 192292766 6412084 4726192..4726686 1 NC_011004.1 KEGG: nha:Nham_2563 hypothetical protein; hypothetical protein 4726686 6412084 Rpal_4400 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993371.1 4726192 D 395960 CDS YP_001993372.1 192292767 6412085 4726903..4727073 1 NC_011004.1 KEGG: ddi:DDB_0229895 Wiscott-Aldrich syndrome protein; hypothetical protein 4727073 6412085 Rpal_4401 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993372.1 4726903 D 395960 CDS YP_001993373.1 192292768 6412086 4727217..4727576 1 NC_011004.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: nha:Nham_2565 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 4727576 6412086 Rpal_4402 Rhodopseudomonas palustris TIE-1 glutathione-dependent formaldehyde-activating protein YP_001993373.1 4727217 D 395960 CDS YP_001993374.1 192292769 6412087 complement(4727734..4728444) 1 NC_011004.1 PFAM: glutathione S-transferase domain; KEGG: bja:bll5800 hypothetical protein; glutathione S-transferase domain-containing protein 4728444 6412087 Rpal_4403 Rhodopseudomonas palustris TIE-1 glutathione S-transferase domain-containing protein YP_001993374.1 4727734 R 395960 CDS YP_001993375.1 192292770 6412088 complement(4728565..4729578) 1 NC_011004.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: bja:bll5807 hypothetical protein; import inner membrane translocase subunit Tim44 4729578 6412088 Rpal_4404 Rhodopseudomonas palustris TIE-1 import inner membrane translocase subunit Tim44 YP_001993375.1 4728565 R 395960 CDS YP_001993376.1 192292771 6412089 complement(4729917..4732559) 1 NC_011004.1 KEGG: nwi:Nwi_1138 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 4732559 6412089 Rpal_4405 Rhodopseudomonas palustris TIE-1 multi-sensor hybrid histidine kinase YP_001993376.1 4729917 R 395960 CDS YP_001993377.1 192292772 6412090 complement(4732669..4733742) 1 NC_011004.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 4733742 flhB 6412090 flhB Rhodopseudomonas palustris TIE-1 flagellar biosynthesis protein FlhB YP_001993377.1 4732669 R 395960 CDS YP_001993378.1 192292773 6412091 complement(4733769..4734536) 1 NC_011004.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 4734536 fliR 6412091 fliR Rhodopseudomonas palustris TIE-1 flagellar biosynthesis protein FliR YP_001993378.1 4733769 R 395960 CDS YP_001993379.1 192292774 6412092 complement(4734643..4734906) 1 NC_011004.1 FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar biosynthesis protein FliQ 4734906 fliQ 6412092 fliQ Rhodopseudomonas palustris TIE-1 flagellar biosynthesis protein FliQ YP_001993379.1 4734643 R 395960 CDS YP_001993380.1 192292775 6412093 complement(4735067..4735372) 1 NC_011004.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagella; flagellar hook-basal body protein FliE 4735372 fliE 6412093 fliE Rhodopseudomonas palustris TIE-1 flagellar hook-basal body protein FliE YP_001993380.1 4735067 R 395960 CDS YP_001993381.1 192292776 6412094 complement(4735408..4735833) 1 NC_011004.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 4735833 flgC 6412094 flgC Rhodopseudomonas palustris TIE-1 flagellar basal body rod protein FlgC YP_001993381.1 4735408 R 395960 CDS YP_001993382.1 192292777 6412095 complement(4735855..4736262) 1 NC_011004.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar basal body rod protein FlgB 4736262 flgB 6412095 flgB Rhodopseudomonas palustris TIE-1 flagellar basal body rod protein FlgB YP_001993382.1 4735855 R 395960 CDS YP_001993383.1 192292778 6412096 4736582..4737739 1 NC_011004.1 KEGG: bbt:BBta_5498 exported protein of unknown function; hypothetical protein 4737739 6412096 Rpal_4412 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993383.1 4736582 D 395960 CDS YP_001993384.1 192292779 6412097 4737736..4738500 1 NC_011004.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 4738500 fliP 6412097 fliP Rhodopseudomonas palustris TIE-1 flagellar biosynthesis protein FliP YP_001993384.1 4737736 D 395960 CDS YP_001993385.1 192292780 6412098 complement(4738670..4742398) 1 NC_011004.1 KEGG: nha:Nham_1389 tetratricopeptide TPR_4 protein; hypothetical protein 4742398 6412098 Rpal_4414 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993385.1 4738670 R 395960 CDS YP_001993386.1 192292781 6412099 4742875..4743204 1 NC_011004.1 KEGG: bja:blr5534 hypothetical protein; hypothetical protein 4743204 6412099 Rpal_4415 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993386.1 4742875 D 395960 CDS YP_001993387.1 192292782 6412100 complement(4743234..4744757) 1 NC_011004.1 PFAM: carboxylesterase type B; KEGG: cmi:CMM_2085 carboxylesterase; carboxylesterase type B 4744757 6412100 Rpal_4416 Rhodopseudomonas palustris TIE-1 carboxylesterase type B YP_001993387.1 4743234 R 395960 CDS YP_001993388.1 192292783 6412101 complement(4744783..4745406) 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: reh:H16_A3218 transcriptional regulator, TetR/AcrR-family; TetR family transcriptional regulator 4745406 6412101 Rpal_4417 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001993388.1 4744783 R 395960 CDS YP_001993389.1 192292784 6412102 complement(4745584..4746348) 1 NC_011004.1 KEGG: bra:BRADO5033 conserved hypothetical protein; signal peptide; hypothetical protein 4746348 6412102 Rpal_4418 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993389.1 4745584 R 395960 CDS YP_001993390.1 192292785 6412103 complement(4746345..4746773) 1 NC_011004.1 KEGG: bja:bll5824 hypothetical protein; hypothetical protein 4746773 6412103 Rpal_4419 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993390.1 4746345 R 395960 CDS YP_001993391.1 192292786 6412104 complement(4746770..4747972) 1 NC_011004.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar motor switch protein FliM 4747972 fliM 6412104 fliM Rhodopseudomonas palustris TIE-1 flagellar motor switch protein FliM YP_001993391.1 4746770 R 395960 CDS YP_001993392.1 192292787 6412105 complement(4747979..4748479) 1 NC_011004.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 4748479 fliL 6412105 fliL Rhodopseudomonas palustris TIE-1 flagellar basal body-associated protein FliL YP_001993392.1 4747979 R 395960 CDS YP_001993393.1 192292788 6412106 4748844..4749605 1 NC_011004.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar basal body rod protein FlgF 4749605 flgF 6412106 flgF Rhodopseudomonas palustris TIE-1 flagellar basal body rod protein FlgF YP_001993393.1 4748844 D 395960 CDS YP_001993394.1 192292789 6412107 4749618..4750406 1 NC_011004.1 makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella; flagellar basal body rod protein FlgG 4750406 flgG 6412107 flgG Rhodopseudomonas palustris TIE-1 flagellar basal body rod protein FlgG YP_001993394.1 4749618 D 395960 CDS YP_001993395.1 192292790 6412108 4750419..4751447 1 NC_011004.1 required for the assembly of the flagellar basal body P-ring; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA 4751447 flgA 6412108 flgA Rhodopseudomonas palustris TIE-1 flagellar basal body P-ring biosynthesis protein FlgA YP_001993395.1 4750419 D 395960 CDS YP_001993396.1 192292791 6412109 4751453..4752211 1 NC_011004.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 4752211 flgH 6412109 flgH Rhodopseudomonas palustris TIE-1 flagellar basal body L-ring protein YP_001993396.1 4751453 D 395960 CDS YP_001993397.1 192292792 6412110 complement(4752387..4755539) 1 NC_011004.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: atc:AGR_L_3217 RND multidrug efflux transporter MexD; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 4755539 6412110 Rpal_4426 Rhodopseudomonas palustris TIE-1 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_001993397.1 4752387 R 395960 CDS YP_001993398.1 192292793 6412111 complement(4755552..4756736) 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: smd:Smed_3399 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit 4756736 6412111 Rpal_4427 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001993398.1 4755552 R 395960 CDS YP_001993399.1 192292794 6412112 4756892..4757455 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: atc:AGR_C_4219 hypothetical protein; TetR family transcriptional regulator 4757455 6412112 Rpal_4428 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001993399.1 4756892 D 395960 CDS YP_001993400.1 192292795 6412113 4757651..4757932 1 NC_011004.1 KEGG: nha:Nham_0415 hypothetical protein; hypothetical protein 4757932 6412113 Rpal_4429 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993400.1 4757651 D 395960 CDS YP_001993401.1 192292796 6412114 complement(4758042..4758470) 1 NC_011004.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: nha:Nham_1346 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 4758470 6412114 Rpal_4430 Rhodopseudomonas palustris TIE-1 TraR/DksA family transcriptional regulator YP_001993401.1 4758042 R 395960 CDS YP_001993402.1 192292797 6412115 complement(4758591..4759001) 1 NC_011004.1 regulator of the sigma 54 transcriptional activator FlbD; represses FlbD when the class II flagellar structure is absent and activates FlbD when the structure is present; flagellar assembly regulator FliX 4759001 fliX 6412115 fliX Rhodopseudomonas palustris TIE-1 flagellar assembly regulator FliX YP_001993402.1 4758591 R 395960 CDS YP_001993403.1 192292798 6412116 4759300..4760421 1 NC_011004.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 4760421 flgI 6412116 flgI Rhodopseudomonas palustris TIE-1 flagellar basal body P-ring protein YP_001993403.1 4759300 D 395960 CDS YP_001993404.1 192292799 6412117 4760421..4760756 1 NC_011004.1 KEGG: bja:blr5839 chemotactic signal-response protein CheL; chemotactic signal-response protein CheL 4760756 6412117 Rpal_4433 Rhodopseudomonas palustris TIE-1 chemotactic signal-response protein CheL YP_001993404.1 4760421 D 395960 CDS YP_001993405.1 192292800 6412118 4760774..4761265 1 NC_011004.1 KEGG: nwi:Nwi_1109 hypothetical protein; hypothetical protein 4761265 6412118 Rpal_4434 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993405.1 4760774 D 395960 CDS YP_001993406.1 192292801 6412119 4761446..4761817 1 NC_011004.1 KEGG: nha:Nham_1340 hypothetical protein; hypothetical protein 4761817 6412119 Rpal_4435 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993406.1 4761446 D 395960 CDS YP_001993407.1 192292802 6412120 complement(4761934..4762302) 1 NC_011004.1 acts as an activator of flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar biosynthesis regulatory protein FlaF 4762302 flaF 6412120 flaF Rhodopseudomonas palustris TIE-1 flagellar biosynthesis regulatory protein FlaF YP_001993407.1 4761934 R 395960 CDS YP_001993408.1 192292803 6412121 complement(4762306..4762686) 1 NC_011004.1 post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA; Bradyrhizobium has one thick and several thin flagella, the Bradyrhizobium protein in this cluster is associated with the thin flagella; flagellar biosynthesis repressor FlbT 4762686 flbT 6412121 flbT Rhodopseudomonas palustris TIE-1 flagellar biosynthesis repressor FlbT YP_001993408.1 4762306 R 395960 CDS YP_001993409.1 192292804 6412122 complement(4762902..4765562) 1 NC_011004.1 structural flagella protein; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellin 4765562 6412122 Rpal_4438 Rhodopseudomonas palustris TIE-1 flagellin YP_001993409.1 4762902 R 395960 CDS YP_001993410.1 192292805 6412123 4766085..4768232 1 NC_011004.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bra:BRADO1360 O-linked N-acetylglucosamine transferase, SPINDLY family; TPR domain protein; hypothetical protein 4768232 6412123 Rpal_4439 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993410.1 4766085 D 395960 CDS YP_001993411.1 192292806 6412124 complement(4768246..4770048) 1 NC_011004.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sus:Acid_2243 thiamine pyrophosphate enzyme TPP binding domain protein; thiamine pyrophosphate protein TPP binding domain-containing protein 4770048 6412124 Rpal_4440 Rhodopseudomonas palustris TIE-1 thiamine pyrophosphate protein TPP binding domain-containing protein YP_001993411.1 4768246 R 395960 CDS YP_001993412.1 192292807 6412125 complement(4770072..4770878) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vha:VIBHAR_03037 hypothetical protein; short-chain dehydrogenase/reductase SDR 4770878 6412125 Rpal_4441 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001993412.1 4770072 R 395960 CDS YP_001993413.1 192292808 6412126 complement(4770875..4771795) 1 NC_011004.1 PFAM: nucleotidyl transferase; KEGG: bbt:BBta_5632 sugar-phosphate nucleotidyl transferase; nucleotidyl transferase 4771795 6412126 Rpal_4442 Rhodopseudomonas palustris TIE-1 nucleotidyl transferase YP_001993413.1 4770875 R 395960 CDS YP_001993414.1 192292809 6412127 complement(4771792..4773276) 1 NC_011004.1 TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: bra:BRADO5164 bifunctional enzyme (sugar kinase/cytidylyltransferase); cytidyltransferase-related domain-containing protein 4773276 6412127 Rpal_4443 Rhodopseudomonas palustris TIE-1 cytidyltransferase-related domain-containing protein YP_001993414.1 4771792 R 395960 CDS YP_001993415.1 192292810 6412128 complement(4773282..4774337) 1 NC_011004.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_5638 alcohol dehydrogenase (zinc-binding); alcohol dehydrogenase zinc-binding domain-containing protein 4774337 6412128 Rpal_4444 Rhodopseudomonas palustris TIE-1 alcohol dehydrogenase zinc-binding domain-containing protein YP_001993415.1 4773282 R 395960 CDS YP_001993416.1 192292811 6412129 complement(4774488..4775540) 1 NC_011004.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: cbd:COXBU7E912_0706 pyruvate dehydrogenase (acetyl-transferring) E1 component, beta subunit; transketolase 4775540 6412129 Rpal_4445 Rhodopseudomonas palustris TIE-1 transketolase YP_001993416.1 4774488 R 395960 CDS YP_001993417.1 192292812 6412130 complement(4775551..4776528) 1 NC_011004.1 PFAM: dehydrogenase E1 component; KEGG: cbu:CBU_0693 dehydrogenase, E1 component, alpha subunit; dehydrogenase E1 component 4776528 6412130 Rpal_4446 Rhodopseudomonas palustris TIE-1 dehydrogenase E1 component YP_001993417.1 4775551 R 395960 CDS YP_001993418.1 192292813 6412131 complement(4776525..4777184) 1 NC_011004.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: cbd:COXBU7E912_0696 methyltransferase; type 11 methyltransferase 4777184 6412131 Rpal_4447 Rhodopseudomonas palustris TIE-1 type 11 methyltransferase YP_001993418.1 4776525 R 395960 CDS YP_001993419.1 192292814 6412132 complement(4777193..4778230) 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bbt:BBta_5635 dTDP-glucose 4,6-dehydratase; NAD-dependent epimerase/dehydratase 4778230 6412132 Rpal_4448 Rhodopseudomonas palustris TIE-1 NAD-dependent epimerase/dehydratase YP_001993419.1 4777193 R 395960 CDS YP_001993420.1 192292815 6412133 complement(4778227..4779165) 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bbt:BBta_5633 sugar-nucleotide epimerase/dehydratase; NAD-dependent epimerase/dehydratase 4779165 6412133 Rpal_4449 Rhodopseudomonas palustris TIE-1 NAD-dependent epimerase/dehydratase YP_001993420.1 4778227 R 395960 CDS YP_001993421.1 192292816 6412134 complement(4779307..4779975) 1 NC_011004.1 PFAM: sugar isomerase (SIS); KEGG: bja:bll5420 phosphoheptose isomerase; sugar isomerase (SIS) 4779975 6412134 Rpal_4450 Rhodopseudomonas palustris TIE-1 sugar isomerase (SIS) YP_001993421.1 4779307 R 395960 CDS YP_001993422.1 192292817 6412135 complement(4780098..4781018) 1 NC_011004.1 TIGRFAM: methyltransferase FkbM family; KEGG: nph:NP3626A homolog 5 to S-adenosylmethionine-dependent methyltransferase 3; methyltransferase FkbM family protein 4781018 6412135 Rpal_4451 Rhodopseudomonas palustris TIE-1 methyltransferase FkbM family protein YP_001993422.1 4780098 R 395960 CDS YP_001993423.1 192292818 6412136 complement(4781174..4783840) 1 NC_011004.1 structural flagella protein; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellin 4783840 6412136 Rpal_4452 Rhodopseudomonas palustris TIE-1 flagellin YP_001993423.1 4781174 R 395960 CDS YP_001993424.1 192292819 6412137 complement(4784148..4785755) 1 NC_011004.1 KEGG: nwi:Nwi_1101 hypothetical protein; hypothetical protein 4785755 6412137 Rpal_4453 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993424.1 4784148 R 395960 CDS YP_001993425.1 192292820 6412138 complement(4785764..4787635) 1 NC_011004.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: nha:Nham_1332 flagellar hook-associated protein; flagellar hook-associated protein FlgK 4787635 6412138 Rpal_4454 Rhodopseudomonas palustris TIE-1 flagellar hook-associated protein FlgK YP_001993425.1 4785764 R 395960 CDS YP_001993426.1 192292821 6412139 complement(4787674..4789470) 1 NC_011004.1 PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: nwi:Nwi_1099 flagellar basal body rod protein, FlaE; hypothetical protein 4789470 6412139 Rpal_4455 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993426.1 4787674 R 395960 CDS YP_001993427.1 192292822 6412140 4789740..4793987 1 NC_011004.1 KEGG: bbt:BBta_5808 sensor histidine kinase with multiple PAS and a response regulator receiver domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 4793987 6412140 Rpal_4456 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor hybrid histidine kinase YP_001993427.1 4789740 D 395960 CDS YP_001993428.1 192292823 6412141 4794177..4794449 1 NC_011004.1 KEGG: bbt:BBta_2392 hypothetical protein; hypothetical protein 4794449 6412141 Rpal_4457 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993428.1 4794177 D 395960 CDS YP_001993429.1 192292824 6412142 complement(4794486..4795979) 1 NC_011004.1 KEGG: cbd:COXBU7E912_1484 hypothetical protein; hypothetical protein 4795979 6412142 Rpal_4458 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993429.1 4794486 R 395960 CDS YP_001993430.1 192292825 6412143 complement(4796131..4796628) 1 NC_011004.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 4796628 6412143 Rpal_4459 Rhodopseudomonas palustris TIE-1 methionine sulfoxide reductase B YP_001993430.1 4796131 R 395960 CDS YP_001993431.1 192292826 6412144 complement(4796763..4798223) 1 NC_011004.1 PFAM: FAD dependent oxidoreductase; KEGG: bja:bll5856 hypothetical protein; FAD dependent oxidoreductase 4798223 6412144 Rpal_4460 Rhodopseudomonas palustris TIE-1 FAD dependent oxidoreductase YP_001993431.1 4796763 R 395960 CDS YP_001993432.1 192292827 6412145 4798364..4798894 1 NC_011004.1 PFAM: phosphoglycerate mutase; KEGG: nha:Nham_1328 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase, SixA 4798894 6412145 Rpal_4461 Rhodopseudomonas palustris TIE-1 phosphohistidine phosphatase, SixA YP_001993432.1 4798364 D 395960 CDS YP_001993433.1 192292828 6412146 4798938..4799369 1 NC_011004.1 PFAM: UspA domain protein; KEGG: bbt:BBta_5541 universal stress protein (Usp); UspA domain-containing protein 4799369 6412146 Rpal_4462 Rhodopseudomonas palustris TIE-1 UspA domain-containing protein YP_001993433.1 4798938 D 395960 CDS YP_001993434.1 192292829 6412147 complement(4799392..4800021) 1 NC_011004.1 KEGG: nha:Nham_1326 hypothetical protein; hypothetical protein 4800021 6412147 Rpal_4463 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993434.1 4799392 R 395960 CDS YP_001993435.1 192292830 6412148 4800137..4800577 1 NC_011004.1 KEGG: nha:Nham_1325 hypothetical protein; hypothetical protein 4800577 6412148 Rpal_4464 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993435.1 4800137 D 395960 CDS YP_001993436.1 192292831 6412149 complement(4800678..4801184) 1 NC_011004.1 PFAM: protein of unknown function DUF892; KEGG: bja:bll5866 hypothetical protein; hypothetical protein 4801184 6412149 Rpal_4465 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993436.1 4800678 R 395960 CDS YP_001993437.1 192292832 6412150 4801591..4802682 1 NC_011004.1 KEGG: bra:BRADO5076 hypothetical protein; hypothetical protein 4802682 6412150 Rpal_4466 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993437.1 4801591 D 395960 CDS YP_001993438.1 192292833 6412151 4802776..4804848 1 NC_011004.1 KEGG: bbt:BBta_5548 exported protein of unknown function; hypothetical protein 4804848 6412151 Rpal_4467 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993438.1 4802776 D 395960 CDS YP_001993439.1 192292834 6412152 complement(4804995..4805651) 1 NC_011004.1 KEGG: bja:bll5882 hypothetical protein; hypothetical protein 4805651 6412152 Rpal_4468 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993439.1 4804995 R 395960 CDS YP_001993440.1 192292835 6412153 complement(4805741..4807009) 1 NC_011004.1 KEGG: aeh:Mlg_2800 O-antigen polymerase; hypothetical protein 4807009 6412153 Rpal_4469 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993440.1 4805741 R 395960 CDS YP_001993441.1 192292836 6412154 complement(4807017..4808342) 1 NC_011004.1 PFAM: glycosyl transferase group 1; KEGG: bte:BTH_I1330 possible glycosyltransferase WbpX; group 1 glycosyl transferase 4808342 6412154 Rpal_4470 Rhodopseudomonas palustris TIE-1 group 1 glycosyl transferase YP_001993441.1 4807017 R 395960 CDS YP_001993442.1 192292837 6412155 4808495..4809556 1 NC_011004.1 PFAM: glycosyl transferase family 2; KEGG: ppd:Ppro_3227 glycosyl transferase, family 2; family 2 glycosyl transferase 4809556 6412155 Rpal_4471 Rhodopseudomonas palustris TIE-1 family 2 glycosyl transferase YP_001993442.1 4808495 D 395960 CDS YP_001993443.1 192292838 6412156 4809625..4810611 1 NC_011004.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: nha:Nham_2780 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 4810611 6412156 Rpal_4472 Rhodopseudomonas palustris TIE-1 GDP-mannose 4,6-dehydratase YP_001993443.1 4809625 D 395960 CDS YP_001993444.1 192292839 6412157 4810611..4811594 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: nha:Nham_2781 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 4811594 6412157 Rpal_4473 Rhodopseudomonas palustris TIE-1 NAD-dependent epimerase/dehydratase YP_001993444.1 4810611 D 395960 CDS YP_001993445.1 192292840 6412158 complement(4811616..4812890) 1 NC_011004.1 PFAM: Chloride channel core; KEGG: bra:BRADO3095 H(+)/Cl(-) exchange transporter; chloride channel protein 4812890 6412158 Rpal_4474 Rhodopseudomonas palustris TIE-1 chloride channel protein YP_001993445.1 4811616 R 395960 CDS YP_001993446.1 192292841 6412159 complement(4813058..4814086) 1 NC_011004.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: nwi:Nwi_1089 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin-disulfide reductase 4814086 6412159 Rpal_4475 Rhodopseudomonas palustris TIE-1 thioredoxin-disulfide reductase YP_001993446.1 4813058 R 395960 CDS YP_001993447.1 192292842 6412160 4814276..4814704 1 NC_011004.1 PFAM: thioesterase superfamily protein; KEGG: bja:blr5884 hypothetical protein; thioesterase superfamily protein 4814704 6412160 Rpal_4476 Rhodopseudomonas palustris TIE-1 thioesterase superfamily protein YP_001993447.1 4814276 D 395960 CDS YP_001993448.1 192292843 6412161 complement(4814883..4815203) 1 NC_011004.1 PFAM: ferredoxin; KEGG: bbt:BBta_5552 2Fe-2S ferredoxin (FdII); ferredoxin 4815203 6412161 Rpal_4477 Rhodopseudomonas palustris TIE-1 ferredoxin YP_001993448.1 4814883 R 395960 CDS YP_001993449.1 192292844 6412162 complement(4815300..4815659) 1 NC_011004.1 PFAM: Hpt domain protein; KEGG: bja:bll5886 two-component hybrid sensor and regulator; Hpt protein 4815659 6412162 Rpal_4478 Rhodopseudomonas palustris TIE-1 Hpt protein YP_001993449.1 4815300 R 395960 CDS YP_001993450.1 192292845 6412163 4815964..4816116 1 NC_011004.1 hypothetical protein 4816116 6412163 Rpal_4479 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993450.1 4815964 D 395960 CDS YP_001993451.1 192292846 6412164 4816100..4822177 1 NC_011004.1 KEGG: bra:BRADO5083 conserved hypothetical protein; methyl-accepting chemotaxis protein; hypothetical protein 4822177 6412164 Rpal_4480 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993451.1 4816100 D 395960 CDS YP_001993452.1 192292847 6412165 4822603..4824087 1 NC_011004.1 PFAM: Amidase; KEGG: pla:Plav_2598 amidase; amidase 4824087 6412165 Rpal_4481 Rhodopseudomonas palustris TIE-1 amidase YP_001993452.1 4822603 D 395960 CDS YP_001993453.1 192292848 6412166 4824332..4825135 1 NC_011004.1 KEGG: bja:blr3164 hypothetical protein; hypothetical protein 4825135 6412166 Rpal_4482 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993453.1 4824332 D 395960 CDS YP_001993454.1 192292849 6412167 complement(4825320..4826213) 1 NC_011004.1 PFAM: mammalian cell entry related domain protein; KEGG: bja:bll5892 hypothetical protein; mammalian cell entry related domain-containing protein 4826213 6412167 Rpal_4483 Rhodopseudomonas palustris TIE-1 mammalian cell entry related domain-containing protein YP_001993454.1 4825320 R 395960 CDS YP_001993455.1 192292850 6412168 complement(4826351..4827124) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO5085 ABC transporter (ATP-binding protein); ABC transporter 4827124 6412168 Rpal_4484 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993455.1 4826351 R 395960 CDS YP_001993456.1 192292851 6412169 complement(4827127..4828278) 1 NC_011004.1 PFAM: protein of unknown function DUF140; KEGG: nha:Nham_1315 protein of unknown function DUF140; hypothetical protein 4828278 6412169 Rpal_4485 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993456.1 4827127 R 395960 CDS YP_001993457.1 192292852 6412170 4828383..4829378 1 NC_011004.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bja:blr5895 hypothetical protein; mandelate racemase/muconate lactonizing protein 4829378 6412170 Rpal_4486 Rhodopseudomonas palustris TIE-1 mandelate racemase/muconate lactonizing protein YP_001993457.1 4828383 D 395960 CDS YP_001993458.1 192292853 6412171 complement(4829348..4830556) 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_5559 permease of the major facilitator superfamily; major facilitator superfamily protein 4830556 6412171 Rpal_4487 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001993458.1 4829348 R 395960 CDS YP_001993459.1 192292854 6412172 4830633..4832090 1 NC_011004.1 KEGG: bra:BRADO5089 hypothetical protein; hypothetical protein 4832090 6412172 Rpal_4488 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993459.1 4830633 D 395960 CDS YP_001993460.1 192292855 6412173 complement(4832120..4833115) 1 NC_011004.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bbt:BBta_5562 threonine dehydratase; pyridoxal-5'-phosphate-dependent protein beta subunit 4833115 6412173 Rpal_4489 Rhodopseudomonas palustris TIE-1 pyridoxal-5'-phosphate-dependent protein beta subunit YP_001993460.1 4832120 R 395960 CDS YP_001993461.1 192292856 6412174 complement(4833165..4834220) 1 NC_011004.1 PFAM: glycosyl transferase group 1; KEGG: nha:Nham_1312 glycosyl transferase, group 1; group 1 glycosyl transferase 4834220 6412174 Rpal_4490 Rhodopseudomonas palustris TIE-1 group 1 glycosyl transferase YP_001993461.1 4833165 R 395960 CDS YP_001993462.1 192292857 6412175 complement(4834220..4835017) 1 NC_011004.1 PFAM: metallophosphoesterase; KEGG: nha:Nham_1311 metallophosphoesterase; metallophosphoesterase 4835017 6412175 Rpal_4491 Rhodopseudomonas palustris TIE-1 metallophosphoesterase YP_001993462.1 4834220 R 395960 CDS YP_001993463.1 192292858 6412176 complement(4835071..4835727) 1 NC_011004.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mrd:Mrad2831_0345 phosphatidylethanolamine N-methyltransferase; phosphatidylethanolamine N-methyltransferase 4835727 6412176 Rpal_4492 Rhodopseudomonas palustris TIE-1 phosphatidylethanolamine N-methyltransferase YP_001993463.1 4835071 R 395960 CDS YP_001993464.1 192292859 6412177 complement(4835820..4836620) 1 NC_011004.1 KEGG: nha:Nham_1310 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 4836620 6412177 Rpal_4493 Rhodopseudomonas palustris TIE-1 phosphomethylpyrimidine kinase YP_001993464.1 4835820 R 395960 CDS YP_001993465.1 192292860 6412178 4836758..4837003 1 NC_011004.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: nha:Nham_1309 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4837003 6412178 Rpal_4494 Rhodopseudomonas palustris TIE-1 AsnC family transcriptional regulator YP_001993465.1 4836758 D 395960 CDS YP_001993466.1 192292861 6412179 complement(4837011..4837940) 1 NC_011004.1 KEGG: bbt:BBta_5605 diheme cytochrome C-type; gluconate 2-dehydrogenase (acceptor) 4837940 6412179 Rpal_4495 Rhodopseudomonas palustris TIE-1 gluconate 2-dehydrogenase (acceptor) YP_001993466.1 4837011 R 395960 CDS YP_001993467.1 192292862 6412180 complement(4837974..4838423) 1 NC_011004.1 PFAM: cytochrome C prime; KEGG: bbt:BBta_5606 cytochrome C, class II; cytochrome C prime 4838423 6412180 Rpal_4496 Rhodopseudomonas palustris TIE-1 cytochrome C prime YP_001993467.1 4837974 R 395960 CDS YP_001993468.1 192292863 6412181 complement(4838535..4840856) 1 NC_011004.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bra:BRADO5140 aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein; carbon monoxide dehydrogenase 4840856 6412181 Rpal_4497 Rhodopseudomonas palustris TIE-1 carbon monoxide dehydrogenase YP_001993468.1 4838535 R 395960 CDS YP_001993469.1 192292864 6412182 complement(4841102..4841395) 1 NC_011004.1 KEGG: nha:Nham_2128 hypothetical protein; hypothetical protein 4841395 6412182 Rpal_4498 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993469.1 4841102 R 395960 CDS YP_001993470.1 192292865 6412183 4841622..4843631 1 NC_011004.1 PFAM: carbamoyltransferase; KEGG: nha:Nham_2127 carbamoyltransferase; carbamoyltransferase 4843631 6412183 Rpal_4499 Rhodopseudomonas palustris TIE-1 carbamoyltransferase YP_001993470.1 4841622 D 395960 CDS YP_001993471.1 192292866 6412184 complement(4843632..4845161) 1 NC_011004.1 TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: bbt:BBta_5611 virulence factor MviN-like protein; integral membrane protein MviN 4845161 6412184 Rpal_4500 Rhodopseudomonas palustris TIE-1 integral membrane protein MviN YP_001993471.1 4843632 R 395960 CDS YP_001993472.1 192292867 6412185 complement(4845347..4846498) 1 NC_011004.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bbt:BBta_5614 aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 4846498 6412185 Rpal_4501 Rhodopseudomonas palustris TIE-1 DegT/DnrJ/EryC1/StrS aminotransferase YP_001993472.1 4845347 R 395960 CDS YP_001993473.1 192292868 6412186 complement(4846556..4847551) 1 NC_011004.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bja:bll5918 dehydrogenase; oxidoreductase domain-containing protein 4847551 6412186 Rpal_4502 Rhodopseudomonas palustris TIE-1 oxidoreductase domain-containing protein YP_001993473.1 4846556 R 395960 CDS YP_001993474.1 192292869 6412187 complement(4847692..4848684) 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bja:bll5920 UDP-glucuronic acid epimerase; NAD-dependent epimerase/dehydratase 4848684 6412187 Rpal_4503 Rhodopseudomonas palustris TIE-1 NAD-dependent epimerase/dehydratase YP_001993474.1 4847692 R 395960 CDS YP_001993475.1 192292870 6412188 4848867..4849826 1 NC_011004.1 KEGG: bja:blr5921 hypothetical protein; hypothetical protein 4849826 6412188 Rpal_4504 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993475.1 4848867 D 395960 CDS YP_001993476.1 192292871 6412189 4849884..4850900 1 NC_011004.1 PFAM: glycosyl transferase family 4; KEGG: bbt:BBta_5665 undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase; glycosyl transferase family protein 4850900 6412189 Rpal_4505 Rhodopseudomonas palustris TIE-1 glycosyl transferase family protein YP_001993476.1 4849884 D 395960 CDS YP_001993477.1 192292872 6412190 complement(4850913..4852838) 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: bja:bll5925 capsular polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD 4852838 6412190 Rpal_4506 Rhodopseudomonas palustris TIE-1 polysaccharide biosynthesis protein CapD YP_001993477.1 4850913 R 395960 CDS YP_001993478.1 192292873 6412191 complement(4852879..4854351) 1 NC_011004.1 TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: bbt:BBta_5668 kinase/ sugar nucleotide transferase; rfaE bifunctional protein 4854351 6412191 Rpal_4507 Rhodopseudomonas palustris TIE-1 rfaE bifunctional protein YP_001993478.1 4852879 R 395960 CDS YP_001993479.1 192292874 6412192 complement(4854376..4855356) 1 NC_011004.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: bja:bll5928 probable ADP-L-glycero-D-manno-heptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 4855356 6412192 Rpal_4508 Rhodopseudomonas palustris TIE-1 ADP-L-glycero-D-manno-heptose-6-epimerase YP_001993479.1 4854376 R 395960 CDS YP_001993480.1 192292875 6412193 4855540..4856616 1 NC_011004.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: bra:BRADO5203 ADP-heptose--LPS heptosyltransferase II; lipopolysaccharide heptosyltransferase II 4856616 6412193 Rpal_4509 Rhodopseudomonas palustris TIE-1 lipopolysaccharide heptosyltransferase II YP_001993480.1 4855540 D 395960 CDS YP_001993481.1 192292876 6412194 4856687..4857274 1 NC_011004.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 4857274 6412194 Rpal_4510 Rhodopseudomonas palustris TIE-1 phosphoheptose isomerase YP_001993481.1 4856687 D 395960 CDS YP_001993482.1 192292877 6412195 4857271..4857813 1 NC_011004.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: polynucleotide kinase 3 phosphatase central region; KEGG: nha:Nham_1295 HAD-superfamily hydrolase subfamily IIIA; histidinol-phosphate phosphatase family protein 4857813 6412195 Rpal_4511 Rhodopseudomonas palustris TIE-1 histidinol-phosphate phosphatase family protein YP_001993482.1 4857271 D 395960 CDS YP_001993483.1 192292878 6412196 complement(4857810..4858754) 1 NC_011004.1 TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: nha:Nham_1294 lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase I 4858754 6412196 Rpal_4512 Rhodopseudomonas palustris TIE-1 lipopolysaccharide heptosyltransferase I YP_001993483.1 4857810 R 395960 CDS YP_001993484.1 192292879 6412197 4858937..4859950 1 NC_011004.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bja:blr5931 UDP-galactose 4-epimerase; UDP-glucose 4-epimerase 4859950 6412197 Rpal_4513 Rhodopseudomonas palustris TIE-1 UDP-glucose 4-epimerase YP_001993484.1 4858937 D 395960 CDS YP_001993485.1 192292880 6412198 4860072..4861874 1 NC_011004.1 PFAM: ABC transporter transmembrane region; ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_1292 ABC transporter; ABC transporter 4861874 6412198 Rpal_4514 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993485.1 4860072 D 395960 CDS YP_001993486.1 192292881 6412199 4861936..4862637 1 NC_011004.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:blr5933 hypothetical protein; fumarylacetoacetate (FAA) hydrolase 4862637 6412199 Rpal_4515 Rhodopseudomonas palustris TIE-1 fumarylacetoacetate (FAA) hydrolase YP_001993486.1 4861936 D 395960 CDS YP_001993487.1 192292882 6412201 4863121..4869081 1 NC_011004.1 KEGG: nwi:Nwi_0909 conserved hypothetical protein, DNA helicase; hypothetical protein 4869081 6412201 Rpal_4517 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993487.1 4863121 D 395960 CDS YP_001993488.1 192292883 6412202 complement(4869088..4870125) 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_2825 PAS:GGDEF; diguanylate cyclase 4870125 6412202 Rpal_4518 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001993488.1 4869088 R 395960 CDS YP_001993489.1 192292884 6412203 4870444..4870902 1 NC_011004.1 KEGG: bja:bll0174 hypothetical protein; hypothetical protein 4870902 6412203 Rpal_4519 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993489.1 4870444 D 395960 CDS YP_001993490.1 192292885 6412204 complement(4870942..4871652) 1 NC_011004.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: bja:bll6060 catabolite gene activator; Crp/Fnr family transcriptional regulator 4871652 6412204 Rpal_4520 Rhodopseudomonas palustris TIE-1 Crp/Fnr family transcriptional regulator YP_001993490.1 4870942 R 395960 CDS YP_001993491.1 192292886 6412205 complement(4871799..4872335) 1 NC_011004.1 hypothetical protein 4872335 6412205 Rpal_4521 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993491.1 4871799 R 395960 CDS YP_001993492.1 192292887 6412206 complement(4872338..4872571) 1 NC_011004.1 hypothetical protein 4872571 6412206 Rpal_4522 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993492.1 4872338 R 395960 CDS YP_001993493.1 192292888 6412207 complement(4872576..4873619) 1 NC_011004.1 PFAM: radical SAM domain protein; KEGG: dau:Daud_1343 radical SAM domain protein; radical SAM domain-containing protein 4873619 6412207 Rpal_4523 Rhodopseudomonas palustris TIE-1 radical SAM domain-containing protein YP_001993493.1 4872576 R 395960 CDS YP_001993494.1 192292889 6412208 4873742..4877059 1 NC_011004.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sme:SMa1591 adenylate cyclase; adenylate/guanylate cyclase 4877059 6412208 Rpal_4524 Rhodopseudomonas palustris TIE-1 adenylate/guanylate cyclase YP_001993494.1 4873742 D 395960 CDS YP_001993495.1 192292890 6412209 4877272..4879347 1 NC_011004.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bbt:BBta_4919 DEAD-box cold-shock protein, ATP-independent RNA helicase; DEAD/DEAH box helicase 4879347 6412209 Rpal_4525 Rhodopseudomonas palustris TIE-1 DEAD/DEAH box helicase YP_001993495.1 4877272 D 395960 CDS YP_001993496.1 192292891 6412210 complement(4879558..4880829) 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:bll2940 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4880829 6412210 Rpal_4526 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001993496.1 4879558 R 395960 CDS YP_001993497.1 192292892 6412211 4881477..4881614 1 NC_011004.1 KEGG: bbt:BBta_7669 hypothetical protein; hypothetical protein 4881614 6412211 Rpal_4527 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993497.1 4881477 D 395960 CDS YP_001993498.1 192292893 6412212 4882138..4882269 1 NC_011004.1 hypothetical protein 4882269 6412212 Rpal_4528 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993498.1 4882138 D 395960 CDS YP_001993499.1 192292894 6412213 complement(4882481..4882756) 1 NC_011004.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 4882756 rpsU 6412213 rpsU Rhodopseudomonas palustris TIE-1 30S ribosomal protein S21 YP_001993499.1 4882481 R 395960 CDS YP_001993500.1 192292895 6412214 complement(4883033..4883398) 1 NC_011004.1 KEGG: bbt:BBta_3101 hypothetical protein; hypothetical protein 4883398 6412214 Rpal_4530 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993500.1 4883033 R 395960 CDS YP_001993501.1 192292896 6412215 complement(4883428..4883601) 1 NC_011004.1 hypothetical protein 4883601 6412215 Rpal_4531 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993501.1 4883428 R 395960 CDS YP_001993502.1 192292897 6412216 4883900..4884169 1 NC_011004.1 KEGG: nha:Nham_2472 hypothetical protein; hypothetical protein 4884169 6412216 Rpal_4532 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993502.1 4883900 D 395960 CDS YP_001993503.1 192292898 6412217 4884156..4884254 1 NC_011004.1 hypothetical protein 4884254 6412217 Rpal_4533 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993503.1 4884156 D 395960 CDS YP_001993504.1 192292899 6412218 4884370..4884633 1 NC_011004.1 KEGG: bbt:BBta_5569 hypothetical protein; hypothetical protein 4884633 6412218 Rpal_4534 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993504.1 4884370 D 395960 CDS YP_001993505.1 192292900 6412219 4884703..4885458 1 NC_011004.1 PFAM: GAF domain protein; KEGG: swi:Swit_5219 signal transduction histidine kinase; GAF sensor protein 4885458 6412219 Rpal_4535 Rhodopseudomonas palustris TIE-1 GAF sensor protein YP_001993505.1 4884703 D 395960 CDS YP_001993506.1 192292901 6412220 4885459..4886751 1 NC_011004.1 PFAM: GAF domain protein; HWE histidine kinase; KEGG: gox:GOX1619 two component sensor histidine kinase; signal transduction histidine kinase 4886751 6412220 Rpal_4536 Rhodopseudomonas palustris TIE-1 signal transduction histidine kinase YP_001993506.1 4885459 D 395960 CDS YP_001993507.1 192292902 6412221 4886748..4887125 1 NC_011004.1 PFAM: response regulator receiver; KEGG: mlo:mll9592 response regulator; response regulator receiver protein 4887125 6412221 Rpal_4537 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001993507.1 4886748 D 395960 CDS YP_001993508.1 192292903 6412222 4887472..4889604 1 NC_011004.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Autotransporter beta- domain protein; KEGG: azc:AZC_3227 outer membrane autotransporter barrel precursor; outer membrane autotransporter barrel domain-containing protein 4889604 6412222 Rpal_4538 Rhodopseudomonas palustris TIE-1 outer membrane autotransporter barrel domain-containing protein YP_001993508.1 4887472 D 395960 CDS YP_001993509.1 192292904 6412223 complement(4889767..4890222) 1 NC_011004.1 PFAM: thioesterase superfamily protein; KEGG: sen:SACE_1886 phenylacetic acid degradation-related protein; thioesterase superfamily protein 4890222 6412223 Rpal_4539 Rhodopseudomonas palustris TIE-1 thioesterase superfamily protein YP_001993509.1 4889767 R 395960 CDS YP_001993510.1 192292905 6412224 4890340..4891026 1 NC_011004.1 PFAM: regulatory protein DeoR; hypothetical protein; KEGG: pla:Plav_0108 helix-turn-helix type 11 domain protein; hypothetical protein 4891026 6412224 Rpal_4540 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993510.1 4890340 D 395960 CDS YP_001993511.1 192292906 6412226 4893575..4893832 1 NC_011004.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rsq:Rsph17025_4105 hypothetical protein; prevent-host-death family protein 4893832 6412226 Rpal_4542 Rhodopseudomonas palustris TIE-1 prevent-host-death family protein YP_001993511.1 4893575 D 395960 CDS YP_001993512.1 192292907 6412227 4893832..4894242 1 NC_011004.1 PFAM: PilT protein domain protein; KEGG: pna:Pnap_1213 PilT protein domain protein; PilT protein domain-containing protein 4894242 6412227 Rpal_4543 Rhodopseudomonas palustris TIE-1 PilT protein domain-containing protein YP_001993512.1 4893832 D 395960 CDS YP_001993513.1 192292908 6412228 4894362..4895021 1 NC_011004.1 hypothetical protein 4895021 6412228 Rpal_4544 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993513.1 4894362 D 395960 CDS YP_001993514.1 192292909 6412229 complement(4895398..4896807) 1 NC_011004.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 4896807 6412229 Rpal_4545 Rhodopseudomonas palustris TIE-1 S-adenosyl-L-homocysteine hydrolase YP_001993514.1 4895398 R 395960 CDS YP_001993515.1 192292910 6412230 complement(4897068..4898264) 1 NC_011004.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 4898264 6412230 Rpal_4546 Rhodopseudomonas palustris TIE-1 S-adenosylmethionine synthetase YP_001993515.1 4897068 R 395960 CDS YP_001993516.1 192292911 6412231 complement(4898328..4899680) 1 NC_011004.1 KEGG: bra:BRADO5240 hypothetical protein; hypothetical protein 4899680 6412231 Rpal_4547 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993516.1 4898328 R 395960 CDS YP_001993517.1 192292912 6412232 4899887..4901197 1 NC_011004.1 KEGG: bja:bll8129 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 4901197 6412232 Rpal_4548 Rhodopseudomonas palustris TIE-1 nucleotide sugar dehydrogenase YP_001993517.1 4899887 D 395960 CDS YP_001993518.1 192292913 6412233 4901465..4902646 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: xau:Xaut_0893 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4902646 6412233 Rpal_4549 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001993518.1 4901465 D 395960 CDS YP_001993519.1 192292914 6412234 4902795..4903667 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: xau:Xaut_0892 inner-membrane translocator; inner-membrane translocator 4903667 6412234 Rpal_4550 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001993519.1 4902795 D 395960 CDS YP_001993520.1 192292915 6412235 4903671..4904615 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: xau:Xaut_0891 inner-membrane translocator; inner-membrane translocator 4904615 6412235 Rpal_4551 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001993520.1 4903671 D 395960 CDS YP_001993521.1 192292916 6412236 4904612..4905394 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: xau:Xaut_0890 ABC transporter; ABC transporter 4905394 6412236 Rpal_4552 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993521.1 4904612 D 395960 CDS YP_001993522.1 192292917 6412237 4905387..4906091 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: xau:Xaut_0889 ABC transporter; ABC transporter 4906091 6412237 Rpal_4553 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993522.1 4905387 D 395960 CDS YP_001993523.1 192292918 6412238 complement(4906324..4907445) 1 NC_011004.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4907445 6412238 Rpal_4554 Rhodopseudomonas palustris TIE-1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_001993523.1 4906324 R 395960 CDS YP_001993524.1 192292919 6412239 complement(4907462..4908178) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll5949 ABC transporter ATP-binding protein; ABC transporter 4908178 6412239 Rpal_4555 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993524.1 4907462 R 395960 CDS YP_001993525.1 192292920 6412240 complement(4908199..4908951) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll5950 ABC transporter ATP-binding protein; ABC transporter 4908951 6412240 Rpal_4556 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993525.1 4908199 R 395960 CDS YP_001993526.1 192292921 6412241 complement(4908948..4909973) 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bja:bll5951 ABC transporter permease protein; inner-membrane translocator 4909973 6412241 Rpal_4557 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001993526.1 4908948 R 395960 CDS YP_001993527.1 192292922 6412242 complement(4909973..4910839) 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bra:BRADO5253 high-affinity branched-chain amino acid transport system permease protein; inner-membrane translocator 4910839 6412242 Rpal_4558 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001993527.1 4909973 R 395960 CDS YP_001993528.1 192292923 6412243 complement(4910990..4912168) 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO5254 conserved hypothetical protein; exported protein; ABC-type branched-chain amino acid transport systems; branched-chain amino acid ABC transporter periplasmic protein 4912168 6412243 Rpal_4559 Rhodopseudomonas palustris TIE-1 branched-chain amino acid ABC transporter periplasmic protein YP_001993528.1 4910990 R 395960 CDS YP_001993529.1 192292924 6412244 4912509..4912805 1 NC_011004.1 KEGG: bja:blr5954 hypothetical protein; hypothetical protein 4912805 6412244 Rpal_4560 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993529.1 4912509 D 395960 CDS YP_001993530.1 192292925 6412245 4912861..4913448 1 NC_011004.1 KEGG: mrd:Mrad2831_0095 hypothetical protein; hypothetical protein 4913448 6412245 Rpal_4561 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993530.1 4912861 D 395960 CDS YP_001993531.1 192292926 6412246 complement(4913456..4914319) 1 NC_011004.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 4914319 purU 6412246 purU Rhodopseudomonas palustris TIE-1 formyltetrahydrofolate deformylase YP_001993531.1 4913456 R 395960 CDS YP_001993532.1 192292927 6412247 4914451..4915296 1 NC_011004.1 PFAM: uroporphyrinogen III synthase HEM4; KEGG: bbt:BBta_5710 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 4915296 6412247 Rpal_4563 Rhodopseudomonas palustris TIE-1 uroporphyrinogen III synthase HEM4 YP_001993532.1 4914451 D 395960 CDS YP_001993533.1 192292928 6412248 4915543..4916775 1 NC_011004.1 KEGG: rme:Rmet_1862 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4916775 6412248 Rpal_4564 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001993533.1 4915543 D 395960 CDS YP_001993534.1 192292929 6412249 4916904..4917851 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: rso:RSc1751 amino acid transmembrane transmembrane protein; inner-membrane translocator 4917851 6412249 Rpal_4565 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001993534.1 4916904 D 395960 CDS YP_001993535.1 192292930 6412250 4917848..4919149 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: reu:Reut_A1401 inner-membrane translocator; inner-membrane translocator 4919149 6412250 Rpal_4566 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001993535.1 4917848 D 395960 CDS YP_001993536.1 192292931 6412251 4919146..4919895 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rso:RSc1753 probable amino-acid ATP-binding ABC transporter protein; ABC transporter 4919895 6412251 Rpal_4567 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993536.1 4919146 D 395960 CDS YP_001993537.1 192292932 6412252 4919895..4920593 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rso:RSc1754 probable amino-acid ATP-binding ABC transporter protein; ABC transporter 4920593 6412252 Rpal_4568 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993537.1 4919895 D 395960 CDS YP_001993538.1 192292933 6412253 4920759..4921337 1 NC_011004.1 KEGG: bra:BRADO7117 hypothetical protein; hypothetical protein 4921337 6412253 Rpal_4569 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993538.1 4920759 D 395960 CDS YP_001993539.1 192292934 6412254 4921459..4923411 1 NC_011004.1 KEGG: sco:SCO4023 integral membrane protein; hypothetical protein 4923411 6412254 Rpal_4570 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993539.1 4921459 D 395960 CDS YP_001993540.1 192292935 6412255 4923629..4924519 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr5962 ABC transporter ATP-binding protein; ABC transporter 4924519 6412255 Rpal_4571 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993540.1 4923629 D 395960 CDS YP_001993541.1 192292936 6412256 4924516..4926447 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bra:BRADO5264 long-chain-fatty-acid-CoA ligase; AMP-dependent synthetase and ligase 4926447 6412256 Rpal_4572 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001993541.1 4924516 D 395960 CDS YP_001993542.1 192292937 6412257 4926548..4927453 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bja:blr5964 ABC transporter permease protein; inner-membrane translocator 4927453 6412257 Rpal_4573 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001993542.1 4926548 D 395960 CDS YP_001993543.1 192292938 6412258 4927559..4928632 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bja:blr5965 ABC transporter permease protein; inner-membrane translocator 4928632 6412258 Rpal_4574 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001993543.1 4927559 D 395960 CDS YP_001993544.1 192292939 6412259 4928690..4929970 1 NC_011004.1 KEGG: bja:blr5966 ABC transporter substrate-binding protein; ABC transporter substrate-binding protein 4929970 6412259 Rpal_4575 Rhodopseudomonas palustris TIE-1 ABC transporter substrate-binding protein YP_001993544.1 4928690 D 395960 CDS YP_001993545.1 192292940 6412260 4930240..4931082 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO5268 high-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding protein); ABC transporter 4931082 6412260 Rpal_4576 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993545.1 4930240 D 395960 CDS YP_001993546.1 192292941 6412261 4932263..4933522 1 NC_011004.1 PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN1503 glycosyltransferase (group 1); group 1 glycosyl transferase 4933522 6412261 Rpal_4577 Rhodopseudomonas palustris TIE-1 group 1 glycosyl transferase YP_001993546.1 4932263 D 395960 CDS YP_001993547.1 192292942 6412262 complement(4933560..4934708) 1 NC_011004.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: pmy:Pmen_1873 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 4934708 6412262 Rpal_4578 Rhodopseudomonas palustris TIE-1 UDP-N-acetylglucosamine 2-epimerase YP_001993547.1 4933560 R 395960 CDS YP_001993548.1 192292943 6412263 4934873..4936003 1 NC_011004.1 PFAM: glycosyl transferase group 1; KEGG: har:HEAR1144 phosphatidylinositol alpha-mannosyltransferase; group 1 glycosyl transferase 4936003 6412263 Rpal_4579 Rhodopseudomonas palustris TIE-1 group 1 glycosyl transferase YP_001993548.1 4934873 D 395960 CDS YP_001993549.1 192292944 6412264 4936168..4936527 1 NC_011004.1 hypothetical protein 4936527 6412264 Rpal_4580 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993549.1 4936168 D 395960 CDS YP_001993550.1 192292945 6412265 4937204..4938454 1 NC_011004.1 PFAM: glycosyl transferase group 1; KEGG: rru:Rru_A2739 hypothetical protein; group 1 glycosyl transferase 4938454 6412265 Rpal_4581 Rhodopseudomonas palustris TIE-1 group 1 glycosyl transferase YP_001993550.1 4937204 D 395960 CDS YP_001993551.1 192292946 6412266 4938494..4939867 1 NC_011004.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_3710 glycosyl transferase group 1; group 1 glycosyl transferase 4939867 6412266 Rpal_4582 Rhodopseudomonas palustris TIE-1 group 1 glycosyl transferase YP_001993551.1 4938494 D 395960 CDS YP_001993552.1 192292947 6412267 4939864..4941114 1 NC_011004.1 PFAM: glycosyl transferase group 1; KEGG: rty:RT0326 probable glycosyltransferase; group 1 glycosyl transferase 4941114 6412267 Rpal_4583 Rhodopseudomonas palustris TIE-1 group 1 glycosyl transferase YP_001993552.1 4939864 D 395960 CDS YP_001993553.1 192292948 6412268 4941111..4942319 1 NC_011004.1 KEGG: mex:Mext_3711 hypothetical protein; hypothetical protein 4942319 6412268 Rpal_4584 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993553.1 4941111 D 395960 CDS YP_001993554.1 192292949 6412269 4942410..4943267 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: rco:RC0456 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 4943267 6412269 Rpal_4585 Rhodopseudomonas palustris TIE-1 dTDP-4-dehydrorhamnose reductase YP_001993554.1 4942410 D 395960 CDS YP_001993555.1 192292950 6412270 4943318..4944364 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; polysaccharide biosynthesis domain protein; KEGG: pfl:PFL_5106 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD 4944364 6412270 Rpal_4586 Rhodopseudomonas palustris TIE-1 polysaccharide biosynthesis protein CapD YP_001993555.1 4943318 D 395960 CDS YP_001993556.1 192292951 6412271 4944435..4945724 1 NC_011004.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_3710 glycosyl transferase group 1; group 1 glycosyl transferase 4945724 6412271 Rpal_4587 Rhodopseudomonas palustris TIE-1 group 1 glycosyl transferase YP_001993556.1 4944435 D 395960 CDS YP_001993557.1 192292952 6412272 4945721..4947094 1 NC_011004.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bra:BRADO5242 hypothetical protein; SAM-dependent methyltransferase domain; type 12 methyltransferase 4947094 6412272 Rpal_4588 Rhodopseudomonas palustris TIE-1 type 12 methyltransferase YP_001993557.1 4945721 D 395960 CDS YP_001993558.1 192292953 6412273 4947141..4947983 1 NC_011004.1 PFAM: ABC transporter; KEGG: xom:XOO_0717 ABC transporter system integral membrane protein; ABC transporter 4947983 6412273 Rpal_4589 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993558.1 4947141 D 395960 CDS YP_001993559.1 192292954 6412274 4947980..4949230 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rca:Rcas_3643 ABC transporter; ABC transporter 4949230 6412274 Rpal_4590 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993559.1 4947980 D 395960 CDS YP_001993560.1 192292955 6412275 4949330..4949806 1 NC_011004.1 KEGG: nmu:Nmul_A2516 methyltransferase; methyltransferase 4949806 6412275 Rpal_4591 Rhodopseudomonas palustris TIE-1 methyltransferase YP_001993560.1 4949330 D 395960 CDS YP_001993561.1 192292956 6412276 4949859..4951796 1 NC_011004.1 KEGG: azo:azo3271 probable asparagine synthetase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase 4951796 6412276 Rpal_4592 Rhodopseudomonas palustris TIE-1 asparagine synthase YP_001993561.1 4949859 D 395960 CDS YP_001993562.1 192292957 6412277 4951807..4954905 1 NC_011004.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: rru:Rru_A2737 glycosyl transferase, family 2; family 2 glycosyl transferase 4954905 6412277 Rpal_4593 Rhodopseudomonas palustris TIE-1 family 2 glycosyl transferase YP_001993562.1 4951807 D 395960 CDS YP_001993563.1 192292958 6412278 4954968..4956158 1 NC_011004.1 KEGG: dvl:Dvul_2945 hypothetical protein; hypothetical protein 4956158 6412278 Rpal_4594 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993563.1 4954968 D 395960 CDS YP_001993564.1 192292959 6412280 4957143..4957409 1 NC_011004.1 PFAM: transposase IS3/IS911 family protein; KEGG: oan:Oant_4528 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 4957409 6412280 Rpal_4596 Rhodopseudomonas palustris TIE-1 transposase IS3/IS911 family protein YP_001993564.1 4957143 D 395960 CDS YP_001993565.1 192292960 6412281 4957403..4958326 1 NC_011004.1 PFAM: Integrase catalytic region; KEGG: bja:blr2054 transposase; integrase catalytic subunit 4958326 6412281 Rpal_4597 Rhodopseudomonas palustris TIE-1 integrase catalytic subunit YP_001993565.1 4957403 D 395960 CDS YP_001993566.1 192292961 6412283 complement(4959221..4960258) 1 NC_011004.1 PFAM: acyltransferase 3; KEGG: rde:RD1_3390 acyltransferase; acyltransferase 3 4960258 6412283 Rpal_4599 Rhodopseudomonas palustris TIE-1 acyltransferase 3 YP_001993566.1 4959221 R 395960 CDS YP_001993567.1 192292962 6412285 4961650..4961994 1 NC_011004.1 hypothetical protein 4961994 6412285 Rpal_4601 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993567.1 4961650 D 395960 CDS YP_001993568.1 192292963 6412286 complement(4962028..4962273) 1 NC_011004.1 KEGG: bbt:BBta_1854 hypothetical protein; hypothetical protein 4962273 6412286 Rpal_4602 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993568.1 4962028 R 395960 CDS YP_001993569.1 192292964 6412287 complement(4962507..4962923) 1 NC_011004.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 4962923 6412287 Rpal_4603 Rhodopseudomonas palustris TIE-1 methionine sulfoxide reductase B YP_001993569.1 4962507 R 395960 CDS YP_001993570.1 192292965 6412288 complement(4962954..4963664) 1 NC_011004.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 4963664 6412288 Rpal_4604 Rhodopseudomonas palustris TIE-1 methionine sulfoxide reductase A YP_001993570.1 4962954 R 395960 CDS YP_001993571.1 192292966 6412290 4964224..4967553 1 NC_011004.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 4967553 carB 6412290 carB Rhodopseudomonas palustris TIE-1 carbamoyl phosphate synthase large subunit YP_001993571.1 4964224 D 395960 CDS YP_001993572.1 192292967 6412291 4967777..4968253 1 NC_011004.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 4968253 greA 6412291 greA Rhodopseudomonas palustris TIE-1 transcription elongation factor GreA YP_001993572.1 4967777 D 395960 CDS YP_001993573.1 192292968 6412292 4968432..4968842 1 NC_011004.1 PFAM: DoxX family protein; KEGG: bbt:BBta_6801 hypothetical protein; DoxX family protein 4968842 6412292 Rpal_4607 Rhodopseudomonas palustris TIE-1 DoxX family protein YP_001993573.1 4968432 D 395960 CDS YP_001993574.1 192292969 6412293 complement(4968879..4969361) 1 NC_011004.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: nwi:Nwi_2452 transcriptional regulatory proteins, AsnC/Lrp family; AsnC family transcriptional regulator 4969361 6412293 Rpal_4608 Rhodopseudomonas palustris TIE-1 AsnC family transcriptional regulator YP_001993574.1 4968879 R 395960 CDS YP_001993575.1 192292970 6412294 4969618..4970583 1 NC_011004.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nwi:Nwi_2453 thioredoxin reductase; thioredoxin reductase 4970583 6412294 Rpal_4609 Rhodopseudomonas palustris TIE-1 thioredoxin reductase YP_001993575.1 4969618 D 395960 CDS YP_001993576.1 192292971 6412295 4970592..4971515 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bra:BRADO1320 transcriptional regulatory protein, LysR family; LysR family transcriptional regulator 4971515 6412295 Rpal_4610 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001993576.1 4970592 D 395960 CDS YP_001993577.1 192292972 6412296 complement(4971832..4972506) 1 NC_011004.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: nwi:Nwi_2455 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 4972506 6412296 Rpal_4611 Rhodopseudomonas palustris TIE-1 Cobyrinic acid ac-diamide synthase YP_001993577.1 4971832 R 395960 CDS YP_001993578.1 192292973 6412297 complement(4972718..4973095) 1 NC_011004.1 KEGG: nwi:Nwi_2456 hypothetical protein; hypothetical protein 4973095 6412297 Rpal_4612 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993578.1 4972718 R 395960 CDS YP_001993579.1 192292974 6412298 complement(4973189..4973524) 1 NC_011004.1 KEGG: bja:bll7386 hypothetical protein; hypothetical protein 4973524 6412298 Rpal_4613 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993579.1 4973189 R 395960 CDS YP_001993580.1 192292975 6412299 complement(4973665..4973895) 1 NC_011004.1 hypothetical protein 4973895 6412299 Rpal_4614 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993580.1 4973665 R 395960 CDS YP_001993581.1 192292976 6412300 complement(4974114..4974926) 1 NC_011004.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: nha:Nham_0392 Flp pilus assembly CpaB; Flp pilus assembly protein CpaB 4974926 6412300 Rpal_4615 Rhodopseudomonas palustris TIE-1 Flp pilus assembly protein CpaB YP_001993581.1 4974114 R 395960 CDS YP_001993582.1 192292977 6412302 complement(4975413..4975844) 1 NC_011004.1 TIGRFAM: phasin family protein; phasin; PFAM: Phasin 2 family protein; KEGG: bja:bll7395 hypothetical protein; phasin 4975844 6412302 Rpal_4616 Rhodopseudomonas palustris TIE-1 phasin YP_001993582.1 4975413 R 395960 CDS YP_001993583.1 192292978 6412303 complement(4976068..4976451) 1 NC_011004.1 TIGRFAM: phasin; KEGG: nha:Nham_1250 phasin 2; phasin 4976451 6412303 Rpal_4617 Rhodopseudomonas palustris TIE-1 phasin YP_001993583.1 4976068 R 395960 CDS YP_001993584.1 192292979 6412304 4976775..4980350 1 NC_011004.1 KEGG: bja:blr7396 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 4980350 6412304 Rpal_4618 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor signal transduction histidine kinase YP_001993584.1 4976775 D 395960 CDS YP_001993585.1 192292980 6412305 4980898..4981149 1 NC_011004.1 PFAM: Rv0623 family protein transcription factor; KEGG: gvi:gsr3224 hypothetical protein; protein transcription factor 4981149 6412305 Rpal_4619 Rhodopseudomonas palustris TIE-1 protein transcription factor YP_001993585.1 4980898 D 395960 CDS YP_001993586.1 192292981 6412306 4981146..4981550 1 NC_011004.1 PFAM: PilT protein domain protein; KEGG: rle:pRL100005 conserved hypothetical PIN domain protein; PilT protein domain-containing protein 4981550 6412306 Rpal_4620 Rhodopseudomonas palustris TIE-1 PilT protein domain-containing protein YP_001993586.1 4981146 D 395960 CDS YP_001993587.1 192292982 6412307 4981634..4982344 1 NC_011004.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bja:blr7084 transcriptional regulatory protein; Crp/Fnr family transcriptional regulator 4982344 6412307 Rpal_4621 Rhodopseudomonas palustris TIE-1 Crp/Fnr family transcriptional regulator YP_001993587.1 4981634 D 395960 CDS YP_001993588.1 192292983 6412308 complement(4982317..4982541) 1 NC_011004.1 KEGG: bja:bsl7085 hypothetical protein; hypothetical protein 4982541 6412308 Rpal_4622 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993588.1 4982317 R 395960 CDS YP_001993589.1 192292984 6412309 4982779..4983891 1 NC_011004.1 KEGG: bbt:BBta_6826 copper-containing nitrite reductase (NO-forming) NirK; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; nitrite reductase 4983891 6412309 Rpal_4623 Rhodopseudomonas palustris TIE-1 nitrite reductase YP_001993589.1 4982779 D 395960 CDS YP_001993590.1 192292985 6412310 4984067..4984948 1 NC_011004.1 PFAM: protein of unknown function DUF323; KEGG: bra:BRADO1226 nitrate reductase, NirV-like; signal peptide; hypothetical protein 4984948 6412310 Rpal_4624 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993590.1 4984067 D 395960 CDS YP_001993591.1 192292986 6412311 4985098..4986642 1 NC_011004.1 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine; thymidine phosphorylase 4986642 6412311 Rpal_4625 Rhodopseudomonas palustris TIE-1 thymidine phosphorylase YP_001993591.1 4985098 D 395960 CDS YP_001993592.1 192292987 6412312 4986639..4987550 1 NC_011004.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 4987550 6412312 Rpal_4626 Rhodopseudomonas palustris TIE-1 phosphoribosylpyrophosphate synthetase YP_001993592.1 4986639 D 395960 CDS YP_001993593.1 192292988 6412313 4987547..4989175 1 NC_011004.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bra:BRADO2723 conserved hypothetical protein; metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 4989175 6412313 Rpal_4627 Rhodopseudomonas palustris TIE-1 beta-lactamase domain-containing protein YP_001993593.1 4987547 D 395960 CDS YP_001993594.1 192292989 6412314 4989314..4989565 1 NC_011004.1 hypothetical protein 4989565 6412314 Rpal_4628 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993594.1 4989314 D 395960 CDS YP_001993595.1 192292990 6412315 complement(4989589..4989987) 1 NC_011004.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: bxe:Bxe_C0717 hypothetical protein; 4-oxalocrotonate tautomerase 4989987 6412315 Rpal_4629 Rhodopseudomonas palustris TIE-1 4-oxalocrotonate tautomerase YP_001993595.1 4989589 R 395960 CDS YP_001993596.1 192292991 6412316 4990090..4990962 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_C0718 transcriptional regulator, LysR family; LysR family transcriptional regulator 4990962 6412316 Rpal_4630 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001993596.1 4990090 D 395960 CDS YP_001993597.1 192292992 6412317 4991082..4992092 1 NC_011004.1 PFAM: extracellular solute-binding protein family 1; KEGG: mes:Meso_0170 extracellular solute-binding protein, family 1; family 1 extracellular solute-binding protein 4992092 6412317 Rpal_4631 Rhodopseudomonas palustris TIE-1 family 1 extracellular solute-binding protein YP_001993597.1 4991082 D 395960 CDS YP_001993598.1 192292993 6412318 4992236..4993882 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: pde:Pden_4446 ABC transporter inner membrane protein; ABC transporter inner membrane protein 4993882 6412318 Rpal_4632 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001993598.1 4992236 D 395960 CDS YP_001993599.1 192292994 6412319 4993999..4994637 1 NC_011004.1 KEGG: nha:Nham_1248 hypothetical protein; hypothetical protein 4994637 6412319 Rpal_4633 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993599.1 4993999 D 395960 CDS YP_001993600.1 192292995 6412320 complement(4994804..4995454) 1 NC_011004.1 KEGG: bra:BRADO1224 acetyl-CoA:acetoacetyl-CoA transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 4995454 6412320 Rpal_4634 Rhodopseudomonas palustris TIE-1 3-oxoacid CoA-transferase subunit B YP_001993600.1 4994804 R 395960 CDS YP_001993601.1 192292996 6412321 complement(4995466..4996182) 1 NC_011004.1 KEGG: bbt:BBta_6830 acetyl-CoA/acetoacetyl-CoA transferase, alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 4996182 6412321 Rpal_4635 Rhodopseudomonas palustris TIE-1 3-oxoacid CoA-transferase subunit A YP_001993601.1 4995466 R 395960 CDS YP_001993602.1 192292997 6412322 4996390..4998336 1 NC_011004.1 PFAM: AsmA family protein; KEGG: nha:Nham_1245 AsmA; AsmA family protein 4998336 6412322 Rpal_4636 Rhodopseudomonas palustris TIE-1 AsmA family protein YP_001993602.1 4996390 D 395960 CDS YP_001993603.1 192292998 6412323 complement(4998494..4999294) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_6836 putrescine transport protein (ABC superfamily, membrane); ornithine carbamoyltransferase 4999294 6412323 Rpal_4637 Rhodopseudomonas palustris TIE-1 ornithine carbamoyltransferase YP_001993603.1 4998494 R 395960 CDS YP_001993604.1 192292999 6412324 complement(4999602..5000516) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:bll7104 ABC transporter permease protein; ABC transporter inner membrane protein 5000516 6412324 Rpal_4638 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001993604.1 4999602 R 395960 CDS YP_001993605.1 192293000 6412325 complement(5000513..5001655) 1 NC_011004.1 KEGG: bbt:BBta_6838 putrescine transport protein (ABC superfamily, atp_bind); TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; Transport-associated OB domain protein; SMART: ATPase AAA; spermidine/putrescine ABC transporter ATPase 5001655 6412325 Rpal_4639 Rhodopseudomonas palustris TIE-1 spermidine/putrescine ABC transporter ATPase YP_001993605.1 5000513 R 395960 CDS YP_001993606.1 192293001 6412326 complement(5001756..5002562) 1 NC_011004.1 PFAM: transcriptional regulator TrmB; KEGG: xau:Xaut_1568 transcriptional regulator, TrmB; TrmB family transcriptional regulator 5002562 6412326 Rpal_4640 Rhodopseudomonas palustris TIE-1 TrmB family transcriptional regulator YP_001993606.1 5001756 R 395960 CDS YP_001993607.1 192293002 6412327 5002793..5003626 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: mka:MK0602 homolog of ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, permease component; nitrate/sulfonate/taurine/bicarbonate ABC transporter permease 5003626 6412327 Rpal_4641 Rhodopseudomonas palustris TIE-1 nitrate/sulfonate/taurine/bicarbonate ABC transporter permease YP_001993607.1 5002793 D 395960 CDS YP_001993608.1 192293003 6412328 5003638..5004492 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ckl:CKL_1039 predicted ABC transporter ATP-binding protein; ABC transporter 5004492 6412328 Rpal_4642 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993608.1 5003638 D 395960 CDS YP_001993609.1 192293004 6412329 5004496..5005551 1 NC_011004.1 KEGG: mex:Mext_3405 aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein 5005551 6412329 Rpal_4643 Rhodopseudomonas palustris TIE-1 nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein YP_001993609.1 5004496 D 395960 CDS YP_001993610.1 192293005 6412330 5005608..5006303 1 NC_011004.1 KEGG: mms:mma_2479 hypothetical protein; hypothetical protein 5006303 6412330 Rpal_4644 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993610.1 5005608 D 395960 CDS YP_001993611.1 192293006 6412331 5006315..5007268 1 NC_011004.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sfu:Sfum_2312 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 5007268 6412331 Rpal_4645 Rhodopseudomonas palustris TIE-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001993611.1 5006315 D 395960 CDS YP_001993612.1 192293007 6412332 complement(5007311..5009941) 1 NC_011004.1 KEGG: bra:BRADO1213 diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains precursor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 5009941 6412332 Rpal_4646 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001993612.1 5007311 R 395960 CDS YP_001993613.1 192293008 6412333 5010160..5011260 1 NC_011004.1 PFAM: FAD dependent oxidoreductase; KEGG: bra:BRADO1212 NAD binding site:FAD dependent oxidoreductase; FAD dependent oxidoreductase 5011260 6412333 Rpal_4647 Rhodopseudomonas palustris TIE-1 FAD dependent oxidoreductase YP_001993613.1 5010160 D 395960 CDS YP_001993614.1 192293009 6412334 5011351..5011659 1 NC_011004.1 PFAM: regulatory protein GntR HTH; KEGG: rsh:Rsph17029_3903 transcriptional regulator, GntR family; GntR family transcriptional regulator 5011659 6412334 Rpal_4648 Rhodopseudomonas palustris TIE-1 GntR family transcriptional regulator YP_001993614.1 5011351 D 395960 CDS YP_001993615.1 192293010 6412335 5011659..5012081 1 NC_011004.1 PFAM: GntR domain protein; KEGG: azo:azo2437 transcriptional regulator; GntR family transcriptional regulator 5012081 6412335 Rpal_4649 Rhodopseudomonas palustris TIE-1 GntR family transcriptional regulator YP_001993615.1 5011659 D 395960 CDS YP_001993616.1 192293011 6412336 5012356..5013558 1 NC_011004.1 KEGG: bra:BRADO6234 ABC transporter (substrate-binding protein); branched-chain amino acid transporter; branched-chain amino acid ABC transporter substrate-binding protein 5013558 6412336 Rpal_4650 Rhodopseudomonas palustris TIE-1 branched-chain amino acid ABC transporter substrate-binding protein YP_001993616.1 5012356 D 395960 CDS YP_001993617.1 192293012 6412337 complement(5013986..5014168) 1 NC_011004.1 KEGG: bja:bsl7109 hypothetical protein; hypothetical protein 5014168 6412337 Rpal_4651 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993617.1 5013986 R 395960 CDS YP_001993618.1 192293013 6412338 5014527..5014733 1 NC_011004.1 PFAM: protein of unknown function DUF465; KEGG: nha:Nham_1238 protein of unknown function DUF465; hypothetical protein 5014733 6412338 Rpal_4652 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993618.1 5014527 D 395960 CDS YP_001993619.1 192293014 6412339 complement(5014723..5015451) 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: nha:Nham_1237 diguanylate cyclase (GGDEF domain); diguanylate cyclase 5015451 6412339 Rpal_4653 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001993619.1 5014723 R 395960 CDS YP_001993620.1 192293015 6412340 5015604..5016092 1 NC_011004.1 KEGG: bbt:BBta_6848 phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 5016092 6412340 Rpal_4654 Rhodopseudomonas palustris TIE-1 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001993620.1 5015604 D 395960 CDS YP_001993621.1 192293016 6412341 5016089..5017189 1 NC_011004.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 5017189 6412341 Rpal_4655 Rhodopseudomonas palustris TIE-1 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_001993621.1 5016089 D 395960 CDS YP_001993622.1 192293017 6412342 5017346..5017609 1 NC_011004.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 5017609 rpsU 6412342 rpsU Rhodopseudomonas palustris TIE-1 30S ribosomal protein S21 YP_001993622.1 5017346 D 395960 CDS YP_001993623.1 192293018 6412343 complement(5017786..5018661) 1 NC_011004.1 KEGG: bja:bll7119 hypothetical protein; hypothetical protein 5018661 6412343 Rpal_4657 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993623.1 5017786 R 395960 CDS YP_001993624.1 192293019 6412344 complement(5018811..5019098) 1 NC_011004.1 KEGG: bja:bsl7120 hypothetical protein; hypothetical protein 5019098 6412344 Rpal_4658 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993624.1 5018811 R 395960 CDS YP_001993625.1 192293020 6412345 5019302..5019676 1 NC_011004.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bbt:BBta_3517 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 5019676 6412345 Rpal_4659 Rhodopseudomonas palustris TIE-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001993625.1 5019302 D 395960 CDS YP_001993626.1 192293021 6412346 complement(5019855..5021258) 1 NC_011004.1 PFAM: NAD(P) transhydrogenase beta subunit; KEGG: bja:bll7124 NAD(P)+ transhydrogenase beta chain; NAD(P)(+) transhydrogenase 5021258 6412346 Rpal_4660 Rhodopseudomonas palustris TIE-1 NAD(P)(+) transhydrogenase YP_001993626.1 5019855 R 395960 CDS YP_001993627.1 192293022 6412347 complement(5021272..5021595) 1 NC_011004.1 KEGG: nwi:Nwi_0996 NAD(P) transhydrogenase subunit alpha part; NAD(P) transhydrogenase subunit alpha 5021595 6412347 Rpal_4661 Rhodopseudomonas palustris TIE-1 NAD(P) transhydrogenase subunit alpha YP_001993627.1 5021272 R 395960 CDS YP_001993628.1 192293023 6412348 complement(5021621..5022748) 1 NC_011004.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: bja:bll7126 NAD(P)+ transhydrogenase; NAD(P)(+) transhydrogenase 5022748 6412348 Rpal_4662 Rhodopseudomonas palustris TIE-1 NAD(P)(+) transhydrogenase YP_001993628.1 5021621 R 395960 CDS YP_001993629.1 192293024 6412349 complement(5022944..5023096) 1 NC_011004.1 PFAM: aa3 type cytochrome C oxidase subunit IV; KEGG: bja:bsl7127 hypothetical protein; aa3 type cytochrome C oxidase subunit IV 5023096 6412349 Rpal_4663 Rhodopseudomonas palustris TIE-1 aa3 type cytochrome C oxidase subunit IV YP_001993629.1 5022944 R 395960 CDS YP_001993630.1 192293025 6412350 complement(5023383..5023523) 1 NC_011004.1 KEGG: bbt:BBta_6860 death on curing protein; death on curing protein 5023523 6412350 Rpal_4664 Rhodopseudomonas palustris TIE-1 death on curing protein YP_001993630.1 5023383 R 395960 CDS YP_001993631.1 192293026 6412351 complement(5023582..5025498) 1 NC_011004.1 TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: bbt:BBta_6862 oligoendopeptidase F; oligoendopeptidase 5025498 6412351 Rpal_4665 Rhodopseudomonas palustris TIE-1 oligoendopeptidase YP_001993631.1 5023582 R 395960 CDS YP_001993632.1 192293027 6412352 5025864..5026499 1 NC_011004.1 PFAM: Integral membrane protein TerC; KEGG: mes:Meso_0688 integral membrane protein TerC; integral membrane protein TerC 5026499 6412352 Rpal_4666 Rhodopseudomonas palustris TIE-1 integral membrane protein TerC YP_001993632.1 5025864 D 395960 CDS YP_001993633.1 192293028 6412353 5026595..5028082 1 NC_011004.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; SMART: ATPase AAA; KEGG: bja:blr7130 two-component response regulator; Fis family transcriptional regulator 5028082 6412353 Rpal_4667 Rhodopseudomonas palustris TIE-1 Fis family transcriptional regulator YP_001993633.1 5026595 D 395960 CDS YP_001993634.1 192293029 6412354 5028430..5030604 1 NC_011004.1 PFAM: peptidoglycan-binding domain 1 protein; KEGG: bja:blr7131 hypothetical protein; peptidoglycan-binding domain 1 protein 5030604 6412354 Rpal_4668 Rhodopseudomonas palustris TIE-1 peptidoglycan-binding domain 1 protein YP_001993634.1 5028430 D 395960 CDS YP_001993635.1 192293030 6412355 5030926..5032548 1 NC_011004.1 PFAM: protein of unknown function DUF882; peptidase M15A; KEGG: nha:Nham_1222 protein of unknown function DUF882; hypothetical protein 5032548 6412355 Rpal_4669 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993635.1 5030926 D 395960 CDS YP_001993636.1 192293031 6412356 complement(5032674..5032946) 1 NC_011004.1 KEGG: nha:Nham_1221 hypothetical protein; hypothetical protein 5032946 6412356 Rpal_4670 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993636.1 5032674 R 395960 CDS YP_001993637.1 192293032 6412357 complement(5033134..5033433) 1 NC_011004.1 PFAM: protein of unknown function DUF1244; KEGG: bja:bll7136 hypothetical protein; hypothetical protein 5033433 6412357 Rpal_4671 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993637.1 5033134 R 395960 CDS YP_001993638.1 192293033 6412358 5033626..5034210 1 NC_011004.1 PFAM: protein of unknown function DUF1036; KEGG: bja:blr7137 hypothetical protein; hypothetical protein 5034210 6412358 Rpal_4672 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993638.1 5033626 D 395960 CDS YP_001993639.1 192293034 6412359 5034207..5035640 1 NC_011004.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 5035640 6412359 Rpal_4673 Rhodopseudomonas palustris TIE-1 pyruvate kinase YP_001993639.1 5034207 D 395960 CDS YP_001993640.1 192293035 6412360 complement(5035867..5036295) 1 NC_011004.1 PFAM: OsmC family protein; KEGG: azc:AZC_1807 OsmC-like protein; OsmC family protein 5036295 6412360 Rpal_4674 Rhodopseudomonas palustris TIE-1 OsmC family protein YP_001993640.1 5035867 R 395960 CDS YP_001993641.1 192293036 6412361 complement(5036292..5037296) 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: bja:bll7545 esterase; alpha/beta hydrolase fold protein 5037296 6412361 Rpal_4675 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001993641.1 5036292 R 395960 CDS YP_001993642.1 192293037 6412362 complement(5037367..5038029) 1 NC_011004.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bra:BRADO6136 conserved hypothetical protein; TPR repeat precursor; hypothetical protein 5038029 6412362 Rpal_4676 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993642.1 5037367 R 395960 CDS YP_001993643.1 192293038 6412363 complement(5038127..5038252) 1 NC_011004.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 5038252 rpmJ 6412363 rpmJ Rhodopseudomonas palustris TIE-1 50S ribosomal protein L36 YP_001993643.1 5038127 R 395960 CDS YP_001993644.1 192293039 6412364 5038563..5039432 1 NC_011004.1 PFAM: amidohydrolase 2; KEGG: bra:BRADO6138 amidohydrolase; amidohydrolase 2 5039432 6412364 Rpal_4678 Rhodopseudomonas palustris TIE-1 amidohydrolase 2 YP_001993644.1 5038563 D 395960 CDS YP_001993645.1 192293040 6412365 5039698..5040438 1 NC_011004.1 KEGG: bbt:BBta_1654 2-haloacid dehalogenase; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase 5040438 6412365 Rpal_4679 Rhodopseudomonas palustris TIE-1 haloacid dehalogenase YP_001993645.1 5039698 D 395960 CDS YP_001993646.1 192293041 6412366 5040515..5040997 1 NC_011004.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bja:blr7561 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 5040997 6412366 Rpal_4680 Rhodopseudomonas palustris TIE-1 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_001993646.1 5040515 D 395960 CDS YP_001993647.1 192293042 6412367 complement(5041071..5041361) 1 NC_011004.1 KEGG: bja:bsl2782 hypothetical protein; hypothetical protein 5041361 6412367 Rpal_4681 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993647.1 5041071 R 395960 CDS YP_001993648.1 192293043 6412368 complement(5041535..5042860) 1 NC_011004.1 PFAM: chemotaxis sensory transducer; KEGG: mag:amb0994 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 5042860 6412368 Rpal_4682 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001993648.1 5041535 R 395960 CDS YP_001993649.1 192293044 6412369 complement(5042835..5043356) 1 NC_011004.1 KEGG: bja:blr2975 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor protein 5043356 6412369 Rpal_4683 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor protein YP_001993649.1 5042835 R 395960 CDS YP_001993650.1 192293045 6412370 complement(5043586..5043810) 1 NC_011004.1 hypothetical protein 5043810 6412370 Rpal_4684 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993650.1 5043586 R 395960 CDS YP_001993651.1 192293046 6412371 5044067..5045428 1 NC_011004.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: nha:Nham_3553 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 5045428 6412371 Rpal_4685 Rhodopseudomonas palustris TIE-1 polysaccharide biosynthesis protein YP_001993651.1 5044067 D 395960 CDS YP_001993652.1 192293047 6412372 5045484..5045717 1 NC_011004.1 KEGG: bra:BRADO3468 hypothetical protein; hypothetical protein 5045717 6412372 Rpal_4686 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993652.1 5045484 D 395960 CDS YP_001993653.1 192293048 6412373 complement(5045873..5046661) 1 NC_011004.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nha:Nham_3554 3-hydroxybutyrate dehydrogenase; 3-hydroxybutyrate dehydrogenase 5046661 6412373 Rpal_4687 Rhodopseudomonas palustris TIE-1 3-hydroxybutyrate dehydrogenase YP_001993653.1 5045873 R 395960 CDS YP_001993654.1 192293049 6412374 complement(5046710..5047849) 1 NC_011004.1 PFAM: Patatin; KEGG: nha:Nham_3555 patatin; patatin 5047849 6412374 Rpal_4688 Rhodopseudomonas palustris TIE-1 patatin YP_001993654.1 5046710 R 395960 CDS YP_001993655.1 192293050 6412375 complement(5047944..5048459) 1 NC_011004.1 PFAM: SCP-like extracellular; KEGG: bja:blr1486 hypothetical protein; hypothetical protein 5048459 6412375 Rpal_4689 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993655.1 5047944 R 395960 CDS YP_001993656.1 192293051 6412376 complement(5048703..5049740) 1 NC_011004.1 PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: bbt:BBta_4311 glutamine synthetase II; glutamate--ammonia ligase 5049740 6412376 Rpal_4690 Rhodopseudomonas palustris TIE-1 glutamate--ammonia ligase YP_001993656.1 5048703 R 395960 CDS YP_001993657.1 192293052 6412377 5050235..5050417 1 NC_011004.1 hypothetical protein 5050417 6412377 Rpal_4691 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993657.1 5050235 D 395960 CDS YP_001993658.1 192293053 6412378 complement(5050519..5051454) 1 NC_011004.1 catalyzes the formation of glutamate from glutamine; glutaminase 5051454 6412378 Rpal_4692 Rhodopseudomonas palustris TIE-1 glutaminase YP_001993658.1 5050519 R 395960 CDS YP_001993659.1 192293054 6412379 complement(5051600..5052109) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bra:BRADO1068 hypothetical protein; hypothetical protein 5052109 6412379 Rpal_4693 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993659.1 5051600 R 395960 CDS YP_001993660.1 192293055 6412380 complement(5052096..5053751) 1 NC_011004.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bja:blr1479 ferredoxin-nitrite reductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain-containing protein 5053751 6412380 Rpal_4694 Rhodopseudomonas palustris TIE-1 nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain-containing protein YP_001993660.1 5052096 R 395960 CDS YP_001993661.1 192293056 6412381 complement(5053762..5054076) 1 NC_011004.1 KEGG: bra:BRADO1066 hypothetical protein; hypothetical protein 5054076 6412381 Rpal_4695 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993661.1 5053762 R 395960 CDS YP_001993662.1 192293057 6412382 complement(5054073..5055509) 1 NC_011004.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bbt:BBta_6982 siroheme synthase; uroporphyrin-III C-methyltransferase 5055509 6412382 Rpal_4696 Rhodopseudomonas palustris TIE-1 uroporphyrin-III C-methyltransferase YP_001993662.1 5054073 R 395960 CDS YP_001993663.1 192293058 6412383 5055908..5058082 1 NC_011004.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 5058082 6412383 Rpal_4697 Rhodopseudomonas palustris TIE-1 malate synthase G YP_001993663.1 5055908 D 395960 CDS YP_001993664.1 192293059 6412384 5058273..5058473 1 NC_011004.1 PFAM: CsbD family protein; KEGG: ret:RHE_CH01802 hypothetical protein; CsbD family protein 5058473 6412384 Rpal_4698 Rhodopseudomonas palustris TIE-1 CsbD family protein YP_001993664.1 5058273 D 395960 CDS YP_001993665.1 192293060 6412385 complement(5058612..5058773) 1 NC_011004.1 KEGG: bja:bsr1472 hypothetical protein; hypothetical protein 5058773 6412385 Rpal_4699 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993665.1 5058612 R 395960 CDS YP_001993666.1 192293061 6412386 complement(5058930..5059589) 1 NC_011004.1 KEGG: bja:blr1469 hypothetical protein; hypothetical protein 5059589 6412386 Rpal_4700 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993666.1 5058930 R 395960 CDS YP_001993667.1 192293062 6412387 complement(5059615..5060382) 1 NC_011004.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr1468 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 5060382 6412387 Rpal_4701 Rhodopseudomonas palustris TIE-1 ErfK/YbiS/YcfS/YnhG family protein YP_001993667.1 5059615 R 395960 CDS YP_001993668.1 192293063 6412388 5060604..5061719 1 NC_011004.1 PFAM: protein of unknown function UPF0118; KEGG: bja:bll1467 hypothetical protein; hypothetical protein 5061719 6412388 Rpal_4702 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993668.1 5060604 D 395960 CDS YP_001993669.1 192293064 6412389 complement(5061835..5062230) 1 NC_011004.1 KEGG: bja:bll7790 hypothetical protein; hypothetical protein 5062230 6412389 Rpal_4703 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993669.1 5061835 R 395960 CDS YP_001993670.1 192293065 6412390 complement(5062605..5063411) 1 NC_011004.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator 5063411 6412390 Rpal_4704 Rhodopseudomonas palustris TIE-1 two-component response regulator YP_001993670.1 5062605 R 395960 CDS YP_001993671.1 192293066 6412391 5063614..5063826 1 NC_011004.1 KEGG: bra:BRADO1048 hypothetical protein; hypothetical protein 5063826 6412391 Rpal_4705 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993671.1 5063614 D 395960 CDS YP_001993672.1 192293067 6412392 5063826..5064371 1 NC_011004.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 5064371 6412392 Rpal_4706 Rhodopseudomonas palustris TIE-1 RNA polymerase sigma factor YP_001993672.1 5063826 D 395960 CDS YP_001993673.1 192293068 6412393 complement(5064529..5066199) 1 NC_011004.1 PFAM: HWE histidine kinase; KEGG: bbt:BBta_7004 signal transduction histidine kinase with CHASE domain; signal transduction histidine kinase 5066199 6412393 Rpal_4707 Rhodopseudomonas palustris TIE-1 signal transduction histidine kinase YP_001993673.1 5064529 R 395960 CDS YP_001993674.1 192293069 6412394 complement(5066447..5067076) 1 NC_011004.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: bra:BRADO1045 urease accessory protein UreG; urease accessory protein UreG 5067076 6412394 Rpal_4708 Rhodopseudomonas palustris TIE-1 urease accessory protein UreG YP_001993674.1 5066447 R 395960 CDS YP_001993675.1 192293070 6412395 5068481..5068765 1 NC_011004.1 KEGG: nha:Nham_1001 hypothetical protein; hypothetical protein 5068765 6412395 Rpal_4709 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993675.1 5068481 D 395960 CDS YP_001993676.1 192293071 6412396 complement(5068834..5070945) 1 NC_011004.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: bbt:BBta_5740 dimethyl sulfoxide reductase(DMSO reductase); molybdopterin oxidoreductase 5070945 6412396 Rpal_4710 Rhodopseudomonas palustris TIE-1 molybdopterin oxidoreductase YP_001993676.1 5068834 R 395960 CDS YP_001993677.1 192293072 6412397 5071080..5071406 1 NC_011004.1 KEGG: bja:blr7579 hypothetical protein; hypothetical protein 5071406 6412397 Rpal_4711 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993677.1 5071080 D 395960 CDS YP_001993678.1 192293073 6412398 complement(5071420..5072658) 1 NC_011004.1 PFAM: cyclic nucleotide-binding; ion transport protein; ion transport 2 domain protein; KEGG: azc:AZC_1864 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein 5072658 6412398 Rpal_4712 Rhodopseudomonas palustris TIE-1 cyclic nucleotide-binding protein YP_001993678.1 5071420 R 395960 CDS YP_001993679.1 192293074 6412399 complement(5072711..5073430) 1 NC_011004.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bja:bll6061 transcriptional regulatory protein; Crp/Fnr family transcriptional regulator 5073430 6412399 Rpal_4713 Rhodopseudomonas palustris TIE-1 Crp/Fnr family transcriptional regulator YP_001993679.1 5072711 R 395960 CDS YP_001993680.1 192293075 6412400 5073625..5073942 1 NC_011004.1 KEGG: bra:BRADO5301 conserved hypothetical protein; cytochrome C; hypothetical protein 5073942 6412400 Rpal_4714 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993680.1 5073625 D 395960 CDS YP_001993681.1 192293076 6412401 complement(5073902..5075098) 1 NC_011004.1 PFAM: mammalian cell entry related domain protein; KEGG: nha:Nham_1923 mammalian cell entry related; mammalian cell entry related domain-containing protein 5075098 6412401 Rpal_4715 Rhodopseudomonas palustris TIE-1 mammalian cell entry related domain-containing protein YP_001993681.1 5073902 R 395960 CDS YP_001993682.1 192293077 6412402 complement(5075110..5075889) 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_1922 ABC transporter; ABC transporter 5075889 6412402 Rpal_4716 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993682.1 5075110 R 395960 CDS YP_001993683.1 192293078 6412403 complement(5075892..5077040) 1 NC_011004.1 PFAM: protein of unknown function DUF140; KEGG: nha:Nham_1921 protein of unknown function DUF140; hypothetical protein 5077040 6412403 Rpal_4717 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993683.1 5075892 R 395960 CDS YP_001993684.1 192293079 6412404 5077191..5077601 1 NC_011004.1 KEGG: nha:Nham_1920 hypothetical protein; hypothetical protein 5077601 6412404 Rpal_4718 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993684.1 5077191 D 395960 CDS YP_001993685.1 192293080 6412405 complement(5077630..5080353) 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: bja:bll6068 hypothetical protein; N-acetyltransferase GCN5 5080353 6412405 Rpal_4719 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001993685.1 5077630 R 395960 CDS YP_001993686.1 192293081 6412406 complement(5080493..5080885) 1 NC_011004.1 PFAM: CBS domain containing protein; KEGG: bra:BRADO2437 conserved hypothetical protein with CBS domain; hypothetical protein 5080885 6412406 Rpal_4720 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993686.1 5080493 R 395960 CDS YP_001993687.1 192293082 6412407 5081176..5082735 1 NC_011004.1 KEGG: nha:Nham_1915 hypothetical protein; hypothetical protein 5082735 6412407 Rpal_4721 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993687.1 5081176 D 395960 CDS YP_001993688.1 192293083 6412408 complement(5082717..5084480) 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; poly-beta-hydroxybutyrate polymerase domain protein; KEGG: bja:bll6073 probable poly-beta-hydroxybutyrate polymerase; poly-beta-hydroxybutyrate polymerase domain-containing protein 5084480 6412408 Rpal_4722 Rhodopseudomonas palustris TIE-1 poly-beta-hydroxybutyrate polymerase domain-containing protein YP_001993688.1 5082717 R 395960 CDS YP_001993689.1 192293084 6412409 complement(5084750..5085586) 1 NC_011004.1 PFAM: UspA domain protein; KEGG: nha:Nham_1913 UspA; UspA domain-containing protein 5085586 6412409 Rpal_4723 Rhodopseudomonas palustris TIE-1 UspA domain-containing protein YP_001993689.1 5084750 R 395960 CDS YP_001993690.1 192293085 6412410 5085776..5086609 1 NC_011004.1 PFAM: UspA domain protein; KEGG: bja:bll2590 hypothetical protein; UspA domain-containing protein 5086609 6412410 Rpal_4724 Rhodopseudomonas palustris TIE-1 UspA domain-containing protein YP_001993690.1 5085776 D 395960 CDS YP_001993691.1 192293086 6412411 5086696..5087427 1 NC_011004.1 PFAM: CBS domain containing protein; transport-associated; KEGG: bra:BRADO5312 conserved hypothetical protein with CBS domain; signal transduction protein with CBS domains 5087427 6412411 Rpal_4725 Rhodopseudomonas palustris TIE-1 signal transduction protein with CBS domains YP_001993691.1 5086696 D 395960 CDS YP_001993692.1 192293087 6412412 5087572..5089098 1 NC_011004.1 KEGG: bja:bll2760 two-component oxygen-sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 5089098 6412412 Rpal_4726 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor signal transduction histidine kinase YP_001993692.1 5087572 D 395960 CDS YP_001993693.1 192293088 6412413 5089091..5089702 1 NC_011004.1 response regulator for histidine kinase FixL; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes; response regulator FixJ 5089702 fixJ 6412413 fixJ Rhodopseudomonas palustris TIE-1 response regulator FixJ YP_001993693.1 5089091 D 395960 CDS YP_001993694.1 192293089 6412414 5089788..5090180 1 NC_011004.1 PFAM: response regulator receiver; KEGG: bja:bll2758 two-component response regulator; response regulator receiver protein 5090180 6412414 Rpal_4728 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001993694.1 5089788 D 395960 CDS YP_001993695.1 192293090 6412415 5090379..5091071 1 NC_011004.1 transcriptional regulator that positively regulated fixLJ operon; upregulated transcription by FixJ; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes; FixK family transcriptional regulator 5091071 fixK 6412415 fixK Rhodopseudomonas palustris TIE-1 FixK family transcriptional regulator YP_001993695.1 5090379 D 395960 CDS YP_001993696.1 192293091 6412416 5091401..5092708 1 NC_011004.1 KEGG: rsq:Rsph17025_0776 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 5092708 6412416 Rpal_4730 Rhodopseudomonas palustris TIE-1 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_001993696.1 5091401 D 395960 CDS YP_001993697.1 192293092 6412417 complement(5092862..5094226) 1 NC_011004.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rsh:Rsph17029_1748 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 5094226 6412417 Rpal_4731 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase (quinone) YP_001993697.1 5092862 R 395960 CDS YP_001993698.1 192293093 6412418 complement(5094237..5095679) 1 NC_011004.1 KEGG: rsq:Rsph17025_1700 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 5095679 6412418 Rpal_4732 Rhodopseudomonas palustris TIE-1 proton-translocating NADH-quinone oxidoreductase subunit M YP_001993698.1 5094237 R 395960 CDS YP_001993699.1 192293094 6412419 complement(5095670..5097739) 1 NC_011004.1 KEGG: rsq:Rsph17025_1699 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 5097739 6412419 Rpal_4733 Rhodopseudomonas palustris TIE-1 proton-translocating NADH-quinone oxidoreductase subunit L YP_001993699.1 5095670 R 395960 CDS YP_001993700.1 192293095 6412420 complement(5097742..5098050) 1 NC_011004.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: rsh:Rsph17029_1745 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase chain 4L 5098050 6412420 Rpal_4734 Rhodopseudomonas palustris TIE-1 NADH-ubiquinone oxidoreductase chain 4L YP_001993700.1 5097742 R 395960 CDS YP_001993701.1 192293096 6412421 complement(5098047..5098553) 1 NC_011004.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: rsh:Rsph17029_1744 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 5098553 6412421 Rpal_4735 Rhodopseudomonas palustris TIE-1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_001993701.1 5098047 R 395960 CDS YP_001993702.1 192293097 6412422 complement(5098550..5099071) 1 NC_011004.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 5099071 6412422 Rpal_4736 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit I YP_001993702.1 5098550 R 395960 CDS YP_001993703.1 192293098 6412423 complement(5099068..5100027) 1 NC_011004.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: rsh:Rsph17029_1742 respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase (quinone) 5100027 6412423 Rpal_4737 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase (quinone) YP_001993703.1 5099068 R 395960 CDS YP_001993704.1 192293099 6412424 complement(5100024..5102657) 1 NC_011004.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 5102657 6412424 Rpal_4738 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit G YP_001993704.1 5100024 R 395960 CDS YP_001993705.1 192293100 6412425 complement(5102654..5103940) 1 NC_011004.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rsh:Rsph17029_1740 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 5103940 6412425 Rpal_4739 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase (quinone) YP_001993705.1 5102654 R 395960 CDS YP_001993706.1 192293101 6412426 complement(5103937..5104425) 1 NC_011004.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 5104425 6412426 Rpal_4740 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit E YP_001993706.1 5103937 R 395960 CDS YP_001993707.1 192293102 6412427 complement(5104422..5106167) 1 NC_011004.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 5106167 6412427 Rpal_4741 Rhodopseudomonas palustris TIE-1 bifunctional NADH:ubiquinone oxidoreductase subunit C/D YP_001993707.1 5104422 R 395960 CDS YP_001993708.1 192293103 6412428 complement(5106164..5106790) 1 NC_011004.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 5106790 6412428 Rpal_4742 Rhodopseudomonas palustris TIE-1 NADH dehydrogenase subunit B YP_001993708.1 5106164 R 395960 CDS YP_001993709.1 192293104 6412429 complement(5106787..5107176) 1 NC_011004.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: pap:PSPA7_2570 NADH dehydrogenase I chain A; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 5107176 6412429 Rpal_4743 Rhodopseudomonas palustris TIE-1 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_001993709.1 5106787 R 395960 CDS YP_001993710.1 192293105 6412430 5107621..5109420 1 NC_011004.1 responsible for transport of beta-1,2-glucans from the cytoplasm to periplasm; inner membrane ABC transporter permease component; Cgt; ChvA; NdvA; cyclic beta-1,2-glucan ABc transporter 5109420 6412430 Rpal_4744 Rhodopseudomonas palustris TIE-1 cyclic beta-1,2-glucan ABc transporter YP_001993710.1 5107621 D 395960 CDS YP_001993711.1 192293106 6412431 5109590..5111041 1 NC_011004.1 PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: bja:bll1320 probable penicillin-binding protein; serine-type D-Ala-D-Ala carboxypeptidase 5111041 6412431 Rpal_4745 Rhodopseudomonas palustris TIE-1 serine-type D-Ala-D-Ala carboxypeptidase YP_001993711.1 5109590 D 395960 CDS YP_001993712.1 192293107 6412432 5111313..5113004 1 NC_011004.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 5113004 6412432 Rpal_4746 Rhodopseudomonas palustris TIE-1 long-chain-fatty-acid--CoA ligase YP_001993712.1 5111313 D 395960 CDS YP_001993713.1 192293108 6412433 5113249..5113734 1 NC_011004.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bja:bll1317 peroxiredoxin; redoxin domain-containing protein 5113734 6412433 Rpal_4747 Rhodopseudomonas palustris TIE-1 redoxin domain-containing protein YP_001993713.1 5113249 D 395960 CDS YP_001993714.1 192293109 6412434 5113875..5115044 1 NC_011004.1 PFAM: Integrase catalytic region; KEGG: sme:SMc04250 transposase protein; integrase catalytic subunit 5115044 6412434 Rpal_4748 Rhodopseudomonas palustris TIE-1 integrase catalytic subunit YP_001993714.1 5113875 D 395960 CDS YP_001993715.1 192293110 6412435 complement(5115151..5115618) 1 NC_011004.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 5115618 rnhA 6412435 rnhA Rhodopseudomonas palustris TIE-1 ribonuclease H YP_001993715.1 5115151 R 395960 CDS YP_001993716.1 192293111 6412436 complement(5115615..5116598) 1 NC_011004.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 5116598 6412436 Rpal_4750 Rhodopseudomonas palustris TIE-1 homoserine kinase YP_001993716.1 5115615 R 395960 CDS YP_001993717.1 192293112 6412437 complement(5116698..5117660) 1 NC_011004.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 5117660 ispH 6412437 ispH Rhodopseudomonas palustris TIE-1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_001993717.1 5116698 R 395960 CDS YP_001993718.1 192293113 6412438 5117920..5118636 1 NC_011004.1 PFAM: protein of unknown function DUF1013; KEGG: nwi:Nwi_2690 protein of unknown function DUF1013; hypothetical protein 5118636 6412438 Rpal_4752 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993718.1 5117920 D 395960 CDS YP_001993719.1 192293114 6412439 complement(5118816..5119193) 1 NC_011004.1 hypothetical protein 5119193 6412439 Rpal_4753 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993719.1 5118816 R 395960 CDS YP_001993720.1 192293115 6412440 complement(5119688..5121070) 1 NC_011004.1 KEGG: ecs:ECs3238 hypothetical protein; hypothetical protein 5121070 6412440 Rpal_4754 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993720.1 5119688 R 395960 CDS YP_001993721.1 192293116 6412441 5122190..5122855 1 NC_011004.1 KEGG: azc:AZC_4237 hypothetical protein; hypothetical protein 5122855 6412441 Rpal_4755 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993721.1 5122190 D 395960 CDS YP_001993722.1 192293117 6412442 5123207..5123836 1 NC_011004.1 KEGG: cdf:CD3165 hypothetical protein; hypothetical protein 5123836 6412442 Rpal_4756 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993722.1 5123207 D 395960 CDS YP_001993723.1 192293118 6412443 5124042..5124467 1 NC_011004.1 hypothetical protein 5124467 6412443 Rpal_4757 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993723.1 5124042 D 395960 CDS YP_001993724.1 192293119 6412444 5124761..5125225 1 NC_011004.1 KEGG: pla:Plav_2328 hypothetical protein; hypothetical protein 5125225 6412444 Rpal_4758 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993724.1 5124761 D 395960 CDS YP_001993725.1 192293120 6412445 complement(5125241..5126239) 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bja:blr7666 transcriptional regulatory protein; AraC family transcriptional regulator 5126239 6412445 Rpal_4759 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001993725.1 5125241 R 395960 CDS YP_001993726.1 192293121 6412446 5126757..5127929 1 NC_011004.1 KEGG: bra:BRADO1888 hypothetical protein; hypothetical protein 5127929 6412446 Rpal_4760 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993726.1 5126757 D 395960 CDS YP_001993727.1 192293122 6412447 5128116..5128589 1 NC_011004.1 PFAM: BLUF domain protein; KEGG: mex:Mext_4031 BLUF domain protein; BLUF domain-containing protein 5128589 6412447 Rpal_4761 Rhodopseudomonas palustris TIE-1 BLUF domain-containing protein YP_001993727.1 5128116 D 395960 CDS YP_001993728.1 192293123 6412448 complement(5128602..5129507) 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_1677 LysR substrate-binding; LysR family transcriptional regulator 5129507 6412448 Rpal_4762 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001993728.1 5128602 R 395960 CDS YP_001993729.1 192293124 6412449 5129600..5130241 1 NC_011004.1 PFAM: YceI family protein; KEGG: mrd:Mrad2831_5253 YceI family protein; hypothetical protein 5130241 6412449 Rpal_4763 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993729.1 5129600 D 395960 CDS YP_001993730.1 192293125 6412450 5130317..5130907 1 NC_011004.1 PFAM: nitroreductase; KEGG: cvi:CV_1813 hypothetical protein; hypothetical protein 5130907 6412450 Rpal_4764 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993730.1 5130317 D 395960 CDS YP_001993731.1 192293126 6412451 5130950..5131753 1 NC_011004.1 PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: gbe:GbCGDNIH1_1055 dioxygenase; extradiol ring-cleavage dioxygenase class III protein subunit B 5131753 6412451 Rpal_4765 Rhodopseudomonas palustris TIE-1 extradiol ring-cleavage dioxygenase class III protein subunit B YP_001993731.1 5130950 D 395960 CDS YP_001993732.1 192293127 6412452 complement(5132128..5132760) 1 NC_011004.1 PFAM: methyltransferase type 11; KEGG: scl:sce7770 hypothetical protein; type 11 methyltransferase 5132760 6412452 Rpal_4766 Rhodopseudomonas palustris TIE-1 type 11 methyltransferase YP_001993732.1 5132128 R 395960 CDS YP_001993733.1 192293128 6412453 5132844..5133671 1 NC_011004.1 KEGG: psb:Psyr_0778 type III effector HopAG1; type III effector HopAG1 5133671 6412453 Rpal_4767 Rhodopseudomonas palustris TIE-1 type III effector HopAG1 YP_001993733.1 5132844 D 395960 CDS YP_001993734.1 192293129 6412454 5133671..5134228 1 NC_011004.1 KEGG: rsq:Rsph17025_3200 hypothetical protein; dual specificity protein phosphatase 5134228 6412454 Rpal_4768 Rhodopseudomonas palustris TIE-1 dual specificity protein phosphatase YP_001993734.1 5133671 D 395960 CDS YP_001993735.1 192293130 6412455 5134361..5134810 1 NC_011004.1 PFAM: phosphate-starvation-inducible E; KEGG: rsq:Rsph17025_1887 phosphate-starvation-inducible E; phosphate-starvation-inducible E 5134810 6412455 Rpal_4769 Rhodopseudomonas palustris TIE-1 phosphate-starvation-inducible E YP_001993735.1 5134361 D 395960 CDS YP_001993736.1 192293131 6412456 5135146..5135301 1 NC_011004.1 PFAM: antenna complex alpha/beta subunit; KEGG: bbt:BBta_3081 light harvesting protein B-800-850; antenna complex alpha/beta subunit 5135301 6412456 Rpal_4770 Rhodopseudomonas palustris TIE-1 antenna complex alpha/beta subunit YP_001993736.1 5135146 D 395960 CDS YP_001993737.1 192293132 6412457 5135314..5135514 1 NC_011004.1 PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1408 antenna complex, alpha/beta subunit; antenna complex alpha/beta subunit 5135514 6412457 Rpal_4771 Rhodopseudomonas palustris TIE-1 antenna complex alpha/beta subunit YP_001993737.1 5135314 D 395960 CDS YP_001993738.1 192293133 6412458 5135983..5136201 1 NC_011004.1 KEGG: nha:Nham_1125 hypothetical protein; hypothetical protein 5136201 6412458 Rpal_4772 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993738.1 5135983 D 395960 CDS YP_001993739.1 192293134 6412459 complement(5136734..5138338) 1 NC_011004.1 KEGG: nha:Nham_1124 hypothetical protein; hypothetical protein 5138338 6412459 Rpal_4773 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993739.1 5136734 R 395960 CDS YP_001993740.1 192293135 6412460 complement(5138376..5139668) 1 NC_011004.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 5139668 6412460 Rpal_4774 Rhodopseudomonas palustris TIE-1 adenylosuccinate synthetase YP_001993740.1 5138376 R 395960 CDS YP_001993741.1 192293136 6412461 complement(5139964..5140275) 1 NC_011004.1 PFAM: type IV pilus assembly PilZ; KEGG: nwi:Nwi_0398 hypothetical protein; type IV pilus assembly PilZ 5140275 6412461 Rpal_4775 Rhodopseudomonas palustris TIE-1 type IV pilus assembly PilZ YP_001993741.1 5139964 R 395960 CDS YP_001993742.1 192293137 6412462 5140669..5141493 1 NC_011004.1 PFAM: aldo/keto reductase; KEGG: bbt:BBta_2445 2,5-diketo-D-gluconate reductase B; aldo/keto reductase 5141493 6412462 Rpal_4776 Rhodopseudomonas palustris TIE-1 aldo/keto reductase YP_001993742.1 5140669 D 395960 CDS YP_001993743.1 192293138 6412463 5141940..5142416 1 NC_011004.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: nha:Nham_1120 hypothetical protein; ybaK/ebsC protein 5142416 6412463 Rpal_4777 Rhodopseudomonas palustris TIE-1 ybaK/ebsC protein YP_001993743.1 5141940 D 395960 CDS YP_001993744.1 192293139 6412464 5142575..5143504 1 NC_011004.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr7055 hypothetical transport protein; hypothetical protein 5143504 6412464 Rpal_4778 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993744.1 5142575 D 395960 CDS YP_001993745.1 192293140 6412465 complement(5143517..5143930) 1 NC_011004.1 KEGG: bja:bll7059 hypothetical protein; hypothetical protein 5143930 6412465 Rpal_4779 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993745.1 5143517 R 395960 CDS YP_001993746.1 192293141 6412466 5144163..5145068 1 NC_011004.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bra:BRADO5941 transport protein; permease of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 5145068 6412466 Rpal_4780 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993746.1 5144163 D 395960 CDS YP_001993747.1 192293142 6412468 5145217..5145567 1 NC_011004.1 KEGG: nwi:Nwi_2996 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 5145567 6412468 Rpal_4782 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis protein YP_001993747.1 5145217 D 395960 CDS YP_001993748.1 192293143 6412469 complement(5145801..5147993) 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:blr2932 hypothetical protein; methyl-accepting chemotaxis sensory transducer 5147993 6412469 Rpal_4783 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001993748.1 5145801 R 395960 CDS YP_001993749.1 192293144 6412470 complement(5148123..5149094) 1 NC_011004.1 PFAM: Rubrerythrin; protein of unknown function DUF125 transmembrane; KEGG: bja:blr7895 hypothetical protein; rubrerythrin 5149094 6412470 Rpal_4784 Rhodopseudomonas palustris TIE-1 rubrerythrin YP_001993749.1 5148123 R 395960 CDS YP_001993750.1 192293145 6412471 5149275..5150630 1 NC_011004.1 KEGG: bra:BRADO5942 conserved hypothetical protein; signal peptide; hypothetical protein 5150630 6412471 Rpal_4785 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993750.1 5149275 D 395960 CDS YP_001993751.1 192293146 6412472 complement(5150825..5151163) 1 NC_011004.1 KEGG: bja:blr7338 hypothetical protein; hypothetical protein 5151163 6412472 Rpal_4786 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993751.1 5150825 R 395960 CDS YP_001993752.1 192293147 6412473 complement(5151247..5152932) 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bra:BRADO5943 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 5152932 6412473 Rpal_4787 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001993752.1 5151247 R 395960 CDS YP_001993753.1 192293148 6412474 complement(5153135..5154820) 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bja:bll7062 methyl accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 5154820 6412474 Rpal_4788 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001993753.1 5153135 R 395960 CDS YP_001993754.1 192293149 6412475 complement(5155065..5156654) 1 NC_011004.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 5156654 6412475 Rpal_4789 Rhodopseudomonas palustris TIE-1 D-3-phosphoglycerate dehydrogenase YP_001993754.1 5155065 R 395960 CDS YP_001993755.1 192293150 6412476 complement(5156824..5157996) 1 NC_011004.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase 5157996 6412476 Rpal_4790 Rhodopseudomonas palustris TIE-1 phosphoserine aminotransferase YP_001993755.1 5156824 R 395960 CDS YP_001993756.1 192293151 6412477 complement(5158722..5160026) 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:blr2976 methyl accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 5160026 6412477 Rpal_4791 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001993756.1 5158722 R 395960 CDS YP_001993757.1 192293152 6412478 complement(5160001..5160525) 1 NC_011004.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: bja:blr2975 hypothetical protein; PAS/PAC sensor protein 5160525 6412478 Rpal_4792 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor protein YP_001993757.1 5160001 R 395960 CDS YP_001993758.1 192293153 6412479 complement(5160698..5161168) 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_1821 hypothetical protein; N-acetyltransferase GCN5 5161168 6412479 Rpal_4793 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001993758.1 5160698 R 395960 CDS YP_001993759.1 192293154 6412480 complement(5161180..5161773) 1 NC_011004.1 PFAM: glutathione S-transferase domain; KEGG: bja:bll7404 hypothetical glutathione S-transferase like protein; glutathione S-transferase domain-containing protein 5161773 6412480 Rpal_4794 Rhodopseudomonas palustris TIE-1 glutathione S-transferase domain-containing protein YP_001993759.1 5161180 R 395960 CDS YP_001993760.1 192293155 6412481 complement(5161837..5162628) 1 NC_011004.1 TIGRFAM: outer membrane insertion C-terminal signal; KEGG: nha:Nham_1117 hypothetical protein; outer membrane insertion C-terminal signal 5162628 6412481 Rpal_4795 Rhodopseudomonas palustris TIE-1 outer membrane insertion C-terminal signal YP_001993760.1 5161837 R 395960 CDS YP_001993761.1 192293156 6412482 complement(5162774..5163649) 1 NC_011004.1 KEGG: nha:Nham_1116 hypothetical protein; hypothetical protein 5163649 6412482 Rpal_4796 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993761.1 5162774 R 395960 CDS YP_001993762.1 192293157 6412483 complement(5163959..5165224) 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll7407 fosmidomycin resistance protein; major facilitator superfamily protein 5165224 6412483 Rpal_4797 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001993762.1 5163959 R 395960 CDS YP_001993763.1 192293158 6412484 complement(5165396..5166748) 1 NC_011004.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 5166748 glmM 6412484 glmM Rhodopseudomonas palustris TIE-1 phosphoglucosamine mutase YP_001993763.1 5165396 R 395960 CDS YP_001993764.1 192293159 6412485 complement(5166950..5167111) 1 NC_011004.1 KEGG: nwi:Nwi_2974 hypothetical protein; hypothetical protein 5167111 6412485 Rpal_4799 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993764.1 5166950 R 395960 CDS YP_001993765.1 192293160 6412486 5167276..5168415 1 NC_011004.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: bja:blr7409 L-lactate dehydrogenase; L-lactate dehydrogenase (cytochrome) 5168415 6412486 Rpal_4800 Rhodopseudomonas palustris TIE-1 L-lactate dehydrogenase (cytochrome) YP_001993765.1 5167276 D 395960 CDS YP_001993766.1 192293161 6412487 5168606..5169421 1 NC_011004.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr2952 probable enoyl-CoA hydratase; Enoyl-CoA hydratase/isomerase 5169421 6412487 Rpal_4801 Rhodopseudomonas palustris TIE-1 Enoyl-CoA hydratase/isomerase YP_001993766.1 5168606 D 395960 CDS YP_001993767.1 192293162 6412488 5169570..5170022 1 NC_011004.1 PFAM: response regulator receiver; KEGG: bra:BRADO3693 response regulator receiver protein (CheY-like); response regulator receiver protein 5170022 6412488 Rpal_4802 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001993767.1 5169570 D 395960 CDS YP_001993768.1 192293163 6412489 complement(5170034..5170870) 1 NC_011004.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: nha:Nham_1109 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 5170870 6412489 Rpal_4803 Rhodopseudomonas palustris TIE-1 shikimate 5-dehydrogenase YP_001993768.1 5170034 R 395960 CDS YP_001993769.1 192293164 6412490 complement(5170972..5172723) 1 NC_011004.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: bra:BRADO5963 sulfate transporter with a STAS domain (C-terminal); sulfate transporter 5172723 6412490 Rpal_4804 Rhodopseudomonas palustris TIE-1 sulfate transporter YP_001993769.1 5170972 R 395960 CDS YP_001993770.1 192293165 6412491 complement(5172765..5173034) 1 NC_011004.1 KEGG: bra:BRADO5964 conserved hypothetical protein; helix-turn-helix motif; XRE family transcriptional regulator 5173034 6412491 Rpal_4805 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001993770.1 5172765 R 395960 CDS YP_001993771.1 192293166 6412492 complement(5173205..5175256) 1 NC_011004.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 5175256 6412492 Rpal_4806 Rhodopseudomonas palustris TIE-1 elongation factor G YP_001993771.1 5173205 R 395960 CDS YP_001993772.1 192293167 6412493 complement(5175468..5175941) 1 NC_011004.1 PFAM: protein of unknown function DUF992; KEGG: bja:bll7415 hypothetical protein; hypothetical protein 5175941 6412493 Rpal_4807 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993772.1 5175468 R 395960 CDS YP_001993773.1 192293168 6412494 complement(5176181..5176696) 1 NC_011004.1 PFAM: protein of unknown function DUF992; KEGG: nha:Nham_1104 protein of unknown function DUF992; hypothetical protein 5176696 6412494 Rpal_4808 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993773.1 5176181 R 395960 CDS YP_001993774.1 192293169 6412495 complement(5176821..5178023) 1 NC_011004.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 5178023 6412495 Rpal_4809 Rhodopseudomonas palustris TIE-1 aspartate aminotransferase YP_001993774.1 5176821 R 395960 CDS YP_001993775.1 192293170 6412496 5178437..5179090 1 NC_011004.1 PFAM: glutathione S-transferase domain; KEGG: bbt:BBta_1799 glutathione S-transferase (GST); glutathione S-transferase domain-containing protein 5179090 6412496 Rpal_4810 Rhodopseudomonas palustris TIE-1 glutathione S-transferase domain-containing protein YP_001993775.1 5178437 D 395960 CDS YP_001993776.1 192293171 6412497 5179227..5179418 1 NC_011004.1 hypothetical protein 5179418 6412497 Rpal_4811 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993776.1 5179227 D 395960 CDS YP_001993777.1 192293172 6412498 5179509..5180672 1 NC_011004.1 PFAM: glucose sorbosone dehydrogenase; KEGG: nwi:Nwi_2982 hypothetical protein; glucose sorbosone dehydrogenase 5180672 6412498 Rpal_4812 Rhodopseudomonas palustris TIE-1 glucose sorbosone dehydrogenase YP_001993777.1 5179509 D 395960 CDS YP_001993778.1 192293173 6412499 5180886..5181734 1 NC_011004.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: azc:AZC_0007 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 5181734 6412499 Rpal_4813 Rhodopseudomonas palustris TIE-1 phospholipid/glycerol acyltransferase YP_001993778.1 5180886 D 395960 CDS YP_001993779.1 192293174 6412500 complement(5181741..5182460) 1 NC_011004.1 unwinds double stranded DNA; replicative DNA helicase 5182460 6412500 Rpal_4814 Rhodopseudomonas palustris TIE-1 replicative DNA helicase YP_001993779.1 5181741 R 395960 CDS YP_001993780.1 192293175 6412501 5182741..5183682 1 NC_011004.1 PFAM: aldo/keto reductase; KEGG: bja:blr7422 oxidoreductase; aldo/keto reductase 5183682 6412501 Rpal_4815 Rhodopseudomonas palustris TIE-1 aldo/keto reductase YP_001993780.1 5182741 D 395960 CDS YP_001993781.1 192293176 6412502 5183963..5184172 1 NC_011004.1 KEGG: nwi:Nwi_2494 hypothetical protein; hypothetical protein 5184172 6412502 Rpal_4816 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993781.1 5183963 D 395960 CDS YP_001993782.1 192293177 6412503 5184169..5184876 1 NC_011004.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bbt:BBta_1791 haloacid dehalogenase/epoxide hydrolase; HAD family hydrolase 5184876 6412503 Rpal_4817 Rhodopseudomonas palustris TIE-1 HAD family hydrolase YP_001993782.1 5184169 D 395960 CDS YP_001993783.1 192293178 6412505 5185565..5186356 1 NC_011004.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 5186356 6412505 Rpal_4819 Rhodopseudomonas palustris TIE-1 enoyl-CoA hydratase YP_001993783.1 5185565 D 395960 CDS YP_001993784.1 192293179 6412506 complement(5186344..5187039) 1 NC_011004.1 PFAM: glutathione S-transferase domain; KEGG: bra:BRADO5989 glutathione S-transferase (GST); glutathione S-transferase domain-containing protein 5187039 6412506 Rpal_4820 Rhodopseudomonas palustris TIE-1 glutathione S-transferase domain-containing protein YP_001993784.1 5186344 R 395960 CDS YP_001993785.1 192293180 6412507 complement(5187337..5189322) 1 NC_011004.1 PFAM: beta-lactamase domain protein; KEGG: rme:Rmet_2149 beta-lactamase-like protein; beta-lactamase domain-containing protein 5189322 6412507 Rpal_4821 Rhodopseudomonas palustris TIE-1 beta-lactamase domain-containing protein YP_001993785.1 5187337 R 395960 CDS YP_001993786.1 192293181 6412508 complement(5189347..5189478) 1 NC_011004.1 hypothetical protein 5189478 6412508 Rpal_4822 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993786.1 5189347 R 395960 CDS YP_001993787.1 192293182 6412509 5189554..5190606 1 NC_011004.1 KEGG: bbt:BBta_6293 membrane protein of unknown function; hypothetical protein 5190606 6412509 Rpal_4823 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993787.1 5189554 D 395960 CDS YP_001993788.1 192293183 6412510 5190666..5193701 1 NC_011004.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 5193701 6412510 Rpal_4824 Rhodopseudomonas palustris TIE-1 excinuclease ABC subunit B YP_001993788.1 5190666 D 395960 CDS YP_001993789.1 192293184 6412511 5193792..5194025 1 NC_011004.1 PFAM: Domain of unknown function DUF1902; KEGG: ttj:TTHA1013 hypothetical protein; hypothetical protein 5194025 6412511 Rpal_4825 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993789.1 5193792 D 395960 CDS YP_001993790.1 192293185 6412512 5194026..5194220 1 NC_011004.1 PFAM: YcfA family protein; KEGG: tth:TTC1885 hypothetical protein; hypothetical protein 5194220 6412512 Rpal_4826 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993790.1 5194026 D 395960 CDS YP_001993791.1 192293186 6412513 5194631..5194909 1 NC_011004.1 PFAM: plasmid maintenance system killer; KEGG: eba:ebA1560 plasmid maintenance system killer protein; plasmid maintenance system killer protein 5194909 6412513 Rpal_4827 Rhodopseudomonas palustris TIE-1 plasmid maintenance system killer protein YP_001993791.1 5194631 D 395960 CDS YP_001993792.1 192293187 6412514 5194921..5195226 1 NC_011004.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: sus:Acid_0689 plasmid maintenance system antidote protein, XRE family; XRE family transcriptional regulator 5195226 6412514 Rpal_4828 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001993792.1 5194921 D 395960 CDS YP_001993793.1 192293188 6412515 complement(5195340..5195654) 1 NC_011004.1 KEGG: nha:Nham_2927 hypothetical protein; hypothetical protein 5195654 6412515 Rpal_4829 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993793.1 5195340 R 395960 CDS YP_001993794.1 192293189 6412516 complement(5196082..5197335) 1 NC_011004.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 5197335 6412516 Rpal_4830 Rhodopseudomonas palustris TIE-1 acetyl-CoA acetyltransferase YP_001993794.1 5196082 R 395960 CDS YP_001993795.1 192293190 6412517 5197549..5197983 1 NC_011004.1 KEGG: nha:Nham_2926 hypothetical protein; hypothetical protein 5197983 6412517 Rpal_4831 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993795.1 5197549 D 395960 CDS YP_001993796.1 192293191 6412518 5198467..5198898 1 NC_011004.1 KEGG: bja:blr7434 hypothetical protein; hypothetical protein 5198898 6412518 Rpal_4832 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993796.1 5198467 D 395960 CDS YP_001993797.1 192293192 6412519 5199106..5199546 1 NC_011004.1 KEGG: nwi:Nwi_2500 hypothetical protein; hypothetical protein 5199546 6412519 Rpal_4833 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993797.1 5199106 D 395960 CDS YP_001993798.1 192293193 6412520 complement(5199696..5199842) 1 NC_011004.1 KEGG: bra:BRADO6012 conserved hypothetical protein; signal peptide; hypothetical protein 5199842 6412520 Rpal_4834 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993798.1 5199696 R 395960 CDS YP_001993799.1 192293194 6412521 complement(5199991..5200473) 1 NC_011004.1 PFAM: MaoC domain protein dehydratase; KEGG: nha:Nham_3098 MaoC-like dehydratase; MaoC domain-containing protein dehydratase 5200473 6412521 Rpal_4835 Rhodopseudomonas palustris TIE-1 MaoC domain-containing protein dehydratase YP_001993799.1 5199991 R 395960 CDS YP_001993800.1 192293195 6412522 complement(5200482..5200964) 1 NC_011004.1 PFAM: MaoC domain protein dehydratase; KEGG: bbt:BBta_1771 hypothetical protein; MaoC domain-containing protein dehydratase 5200964 6412522 Rpal_4836 Rhodopseudomonas palustris TIE-1 MaoC domain-containing protein dehydratase YP_001993800.1 5200482 R 395960 CDS YP_001993801.1 192293196 6412523 5201050..5201343 1 NC_011004.1 KEGG: nha:Nham_3100 hypothetical protein; hypothetical protein 5201343 6412523 Rpal_4837 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993801.1 5201050 D 395960 CDS YP_001993802.1 192293197 6412524 complement(5201496..5202593) 1 NC_011004.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 5202593 6412524 Rpal_4838 Rhodopseudomonas palustris TIE-1 GTP-dependent nucleic acid-binding protein EngD YP_001993802.1 5201496 R 395960 CDS YP_001993803.1 192293198 6412525 complement(5202721..5203341) 1 NC_011004.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 5203341 6412525 Rpal_4839 Rhodopseudomonas palustris TIE-1 peptidyl-tRNA hydrolase YP_001993803.1 5202721 R 395960 CDS YP_001993804.1 192293199 6412526 complement(5203363..5204055) 1 NC_011004.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 5204055 6412526 Rpal_4840 Rhodopseudomonas palustris TIE-1 50S ribosomal protein L25/general stress protein Ctc YP_001993804.1 5203363 R 395960 CDS YP_001993805.1 192293200 6412527 complement(5204354..5204632) 1 NC_011004.1 PFAM: protein of unknown function DUF526; KEGG: bra:BRADO6005 hypothetical protein; hypothetical protein 5204632 6412527 Rpal_4841 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993805.1 5204354 R 395960 CDS YP_001993806.1 192293201 6412528 5204886..5205746 1 NC_011004.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 5205746 6412528 Rpal_4842 Rhodopseudomonas palustris TIE-1 prolipoprotein diacylglyceryl transferase YP_001993806.1 5204886 D 395960 CDS YP_001993807.1 192293202 6412529 5205743..5206882 1 NC_011004.1 PFAM: protein of unknown function DUF185; KEGG: bra:BRADO6003 hypothetical protein; hypothetical protein 5206882 6412529 Rpal_4843 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993807.1 5205743 D 395960 CDS YP_001993808.1 192293203 6412530 5206879..5207652 1 NC_011004.1 PFAM: protein of unknown function DUF152; KEGG: bra:BRADO6002 hypothetical protein; hypothetical protein 5207652 6412530 Rpal_4844 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993808.1 5206879 D 395960 CDS YP_001993809.1 192293204 6412531 5207885..5208493 1 NC_011004.1 KEGG: bja:blr7447 hypothetical protein; hypothetical protein 5208493 6412531 Rpal_4845 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993809.1 5207885 D 395960 CDS YP_001993810.1 192293205 6412532 5208662..5209615 1 NC_011004.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 5209615 6412532 Rpal_4846 Rhodopseudomonas palustris TIE-1 ribose-phosphate pyrophosphokinase YP_001993810.1 5208662 D 395960 CDS YP_001993811.1 192293206 6412533 complement(5209816..5210349) 1 NC_011004.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; riboflavin synthase subunit beta 5210349 6412533 Rpal_4847 Rhodopseudomonas palustris TIE-1 riboflavin synthase subunit beta YP_001993811.1 5209816 R 395960 CDS YP_001993812.1 192293207 6412534 5210705..5211205 1 NC_011004.1 PFAM: Protein of unknown function DUF1790; KEGG: nha:Nham_3105 hypothetical protein; hypothetical protein 5211205 6412534 Rpal_4848 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993812.1 5210705 D 395960 CDS YP_001993813.1 192293208 6412535 5211202..5211630 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: psb:Psyr_0869 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5211630 6412535 Rpal_4849 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001993813.1 5211202 D 395960 CDS YP_001993814.1 192293209 6412536 5211727..5212560 1 NC_011004.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 5212560 6412536 Rpal_4850 Rhodopseudomonas palustris TIE-1 pyrroline-5-carboxylate reductase YP_001993814.1 5211727 D 395960 CDS YP_001993815.1 192293210 6412537 complement(5212726..5214114) 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bja:blr7462 two-component hybrid sensor and regulator; integral membrane sensor signal transduction histidine kinase 5214114 6412537 Rpal_4851 Rhodopseudomonas palustris TIE-1 integral membrane sensor signal transduction histidine kinase YP_001993815.1 5212726 R 395960 CDS YP_001993816.1 192293211 6412538 complement(5214393..5215115) 1 NC_011004.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_3137 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 5215115 6412538 Rpal_4852 Rhodopseudomonas palustris TIE-1 winged helix family two component transcriptional regulator YP_001993816.1 5214393 R 395960 CDS YP_001993817.1 192293212 6412539 complement(5215112..5215663) 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: bbt:BBta_1738 transcriptional regulator, MarR family; MarR family transcriptional regulator 5215663 6412539 Rpal_4853 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001993817.1 5215112 R 395960 CDS YP_001993818.1 192293213 6412540 5215946..5217058 1 NC_011004.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 5217058 6412540 Rpal_4854 Rhodopseudomonas palustris TIE-1 branched-chain amino acid aminotransferase YP_001993818.1 5215946 D 395960 CDS YP_001993819.1 192293214 6412541 complement(5217185..5218972) 1 NC_011004.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 5218972 mutL 6412541 mutL Rhodopseudomonas palustris TIE-1 DNA mismatch repair protein YP_001993819.1 5217185 R 395960 CDS YP_001993820.1 192293215 6412542 complement(5219207..5219626) 1 NC_011004.1 PFAM: Class I peptide chain release factor; KEGG: bja:blr7486 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein 5219626 6412542 Rpal_4856 Rhodopseudomonas palustris TIE-1 peptidyl-tRNA hydrolase domain-containing protein YP_001993820.1 5219207 R 395960 CDS YP_001993821.1 192293216 6412543 complement(5219777..5221210) 1 NC_011004.1 PFAM: peptidase M16 domain protein; KEGG: bra:BRADO6071 Zn-dependent protease; peptidase M16 domain-containing protein 5221210 6412543 Rpal_4857 Rhodopseudomonas palustris TIE-1 peptidase M16 domain-containing protein YP_001993821.1 5219777 R 395960 CDS YP_001993822.1 192293217 6412544 complement(5221207..5222598) 1 NC_011004.1 PFAM: peptidase M16 domain protein; KEGG: bja:blr7484 hypothetical zinc protease; peptidase M16 domain-containing protein 5222598 6412544 Rpal_4858 Rhodopseudomonas palustris TIE-1 peptidase M16 domain-containing protein YP_001993822.1 5221207 R 395960 CDS YP_001993823.1 192293218 6412545 complement(5222769..5223485) 1 NC_011004.1 KEGG: bbt:BBta_1714 exported protein of unknown function; hypothetical protein 5223485 6412545 Rpal_4859 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993823.1 5222769 R 395960 CDS YP_001993824.1 192293219 6412546 complement(5223566..5224060) 1 NC_011004.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 5224060 6412546 Rpal_4860 Rhodopseudomonas palustris TIE-1 lipoprotein signal peptidase YP_001993824.1 5223566 R 395960 CDS YP_001993825.1 192293220 6412547 complement(5224219..5227233) 1 NC_011004.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 5227233 ileS 6412547 ileS Rhodopseudomonas palustris TIE-1 isoleucyl-tRNA synthetase YP_001993825.1 5224219 R 395960 CDS YP_001993826.1 192293221 6412548 complement(5227416..5227988) 1 NC_011004.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN5256 acetyltransferase; transferase hexapeptide repeat containing protein 5227988 6412548 Rpal_4862 Rhodopseudomonas palustris TIE-1 transferase hexapeptide repeat containing protein YP_001993826.1 5227416 R 395960 CDS YP_001993827.1 192293222 6412549 complement(5227985..5228953) 1 NC_011004.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; riboflavin kinase; KEGG: bja:blr7480 riboflavin biosynthesis bifunctional protein; riboflavin biosynthesis protein RibF 5228953 6412549 Rpal_4863 Rhodopseudomonas palustris TIE-1 riboflavin biosynthesis protein RibF YP_001993827.1 5227985 R 395960 CDS YP_001993828.1 192293223 6412550 complement(5229076..5229771) 1 NC_011004.1 PFAM: ribonuclease T2; KEGG: nha:Nham_3150 ribonuclease T2; ribonuclease T2 5229771 6412550 Rpal_4864 Rhodopseudomonas palustris TIE-1 ribonuclease T2 YP_001993828.1 5229076 R 395960 CDS YP_001993829.1 192293224 6412551 complement(5229876..5230337) 1 NC_011004.1 KEGG: bbt:BBta_1733 exported protein of unknown function; hypothetical protein 5230337 6412551 Rpal_4865 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993829.1 5229876 R 395960 CDS YP_001993830.1 192293225 6412552 5230504..5230794 1 NC_011004.1 KEGG: nha:Nham_3152 hypothetical protein; hypothetical protein 5230794 6412552 Rpal_4866 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993830.1 5230504 D 395960 CDS YP_001993831.1 192293226 6412553 5230804..5231337 1 NC_011004.1 KEGG: bra:BRADO6048 conserved hypothetical protein; signal peptide; hypothetical protein 5231337 6412553 Rpal_4867 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993831.1 5230804 D 395960 CDS YP_001993832.1 192293227 6412554 5231479..5231859 1 NC_011004.1 KEGG: bja:bll2461 hypothetical protein; hypothetical protein 5231859 6412554 Rpal_4868 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993832.1 5231479 D 395960 CDS YP_001993833.1 192293228 6412555 5231979..5234333 1 NC_011004.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbt:BBta_2266 outer membrane hemin/siderophore receptor protein; TonB-dependent receptor 5234333 6412555 Rpal_4869 Rhodopseudomonas palustris TIE-1 TonB-dependent receptor YP_001993833.1 5231979 D 395960 CDS YP_001993834.1 192293229 6412556 5234582..5234938 1 NC_011004.1 KEGG: nwi:Nwi_2630 hypothetical protein; hypothetical protein 5234938 6412556 Rpal_4870 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993834.1 5234582 D 395960 CDS YP_001993835.1 192293230 6412557 5235086..5237359 1 NC_011004.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bxe:Bxe_B0900 TonB-dependent siderophore receptor; TonB-dependent receptor 5237359 6412557 Rpal_4871 Rhodopseudomonas palustris TIE-1 TonB-dependent receptor YP_001993835.1 5235086 D 395960 CDS YP_001993836.1 192293231 6412558 complement(5237382..5237924) 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_3258 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5237924 6412558 Rpal_4872 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001993836.1 5237382 R 395960 CDS YP_001993837.1 192293232 6412559 complement(5237941..5239644) 1 NC_011004.1 PFAM: MscS Mechanosensitive ion channel; KEGG: fjo:Fjoh_3200 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 5239644 6412559 Rpal_4873 Rhodopseudomonas palustris TIE-1 mechanosensitive ion channel MscS YP_001993837.1 5237941 R 395960 CDS YP_001993838.1 192293233 6412560 complement(5239873..5240361) 1 NC_011004.1 PFAM: NUDIX hydrolase; KEGG: nha:Nham_3259 NUDIX hydrolase; NUDIX hydrolase 5240361 6412560 Rpal_4874 Rhodopseudomonas palustris TIE-1 NUDIX hydrolase YP_001993838.1 5239873 R 395960 CDS YP_001993839.1 192293234 6412561 5240496..5241377 1 NC_011004.1 PFAM: metallophosphoesterase; KEGG: bja:bll2457 hypothetical protein; metallophosphoesterase 5241377 6412561 Rpal_4875 Rhodopseudomonas palustris TIE-1 metallophosphoesterase YP_001993839.1 5240496 D 395960 CDS YP_001993840.1 192293235 6412562 complement(5241423..5241974) 1 NC_011004.1 KEGG: nha:Nham_1099 hypothetical protein; hypothetical protein 5241974 6412562 Rpal_4876 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993840.1 5241423 R 395960 CDS YP_001993841.1 192293236 6412563 complement(5242239..5242454) 1 NC_011004.1 KEGG: nha:Nham_1098 hypothetical protein; hypothetical protein 5242454 6412563 Rpal_4877 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993841.1 5242239 R 395960 CDS YP_001993842.1 192293237 6412564 complement(5242479..5244113) 1 NC_011004.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 5244113 6412564 Rpal_4878 Rhodopseudomonas palustris TIE-1 isocitrate lyase YP_001993842.1 5242479 R 395960 CDS YP_001993843.1 192293238 6412565 5244327..5245769 1 NC_011004.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: nha:Nham_1096 transcriptional regulator, XRE family; XRE family transcriptional regulator 5245769 6412565 Rpal_4879 Rhodopseudomonas palustris TIE-1 XRE family transcriptional regulator YP_001993843.1 5244327 D 395960 CDS YP_001993844.1 192293239 6412566 5246048..5246947 1 NC_011004.1 KEGG: azc:AZC_3857 hypothetical protein; hypothetical protein 5246947 6412566 Rpal_4880 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993844.1 5246048 D 395960 CDS YP_001993845.1 192293240 6412567 5247003..5248331 1 NC_011004.1 TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: nha:Nham_1092 lytic murein transglycosylase; lytic murein transglycosylase 5248331 6412567 Rpal_4881 Rhodopseudomonas palustris TIE-1 lytic murein transglycosylase YP_001993845.1 5247003 D 395960 CDS YP_001993846.1 192293241 6412568 5248413..5249597 1 NC_011004.1 PFAM: extracellular ligand-binding receptor; KEGG: bja:bll0887 ABC transporter substrate-binding protein; extracellular ligand-binding receptor 5249597 6412568 Rpal_4882 Rhodopseudomonas palustris TIE-1 extracellular ligand-binding receptor YP_001993846.1 5248413 D 395960 CDS YP_001993847.1 192293242 6412569 5249857..5250621 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_7683 branched-chain amino acid ABC transporter ATP-binding protein; ABC transporter 5250621 6412569 Rpal_4883 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993847.1 5249857 D 395960 CDS YP_001993848.1 192293243 6412570 5251035..5251757 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll0885 ABC transporter ATP-binding protein; ABC transporter 5251757 6412570 Rpal_4884 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993848.1 5251035 D 395960 CDS YP_001993849.1 192293244 6412571 5251754..5252779 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bbt:BBta_7685 branched-chain amino acid ABC transporter permease protein; inner-membrane translocator 5252779 6412571 Rpal_4885 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001993849.1 5251754 D 395960 CDS YP_001993850.1 192293245 6412572 5252776..5253843 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bra:BRADO0496 branched-chain amino acid ABC transporter permease protein; inner-membrane translocator 5253843 6412572 Rpal_4886 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001993850.1 5252776 D 395960 CDS YP_001993851.1 192293246 6412573 5254215..5254523 1 NC_011004.1 hypothetical protein 5254523 6412573 Rpal_4887 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993851.1 5254215 D 395960 CDS YP_001993852.1 192293247 6412574 5254767..5255867 1 NC_011004.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bra:BRADO1926 N-ethylmaleimide reductase, FMN-linked; NADH:flavin oxidoreductase 5255867 6412574 Rpal_4888 Rhodopseudomonas palustris TIE-1 NADH:flavin oxidoreductase YP_001993852.1 5254767 D 395960 CDS YP_001993853.1 192293248 6412575 complement(5256234..5258024) 1 NC_011004.1 KEGG: bbt:BBta_2227 periplasmic binding ABC transporter protein, sugar binding precursor; sugar ABC transporter substrate-binding protein 5258024 6412575 Rpal_4889 Rhodopseudomonas palustris TIE-1 sugar ABC transporter substrate-binding protein YP_001993853.1 5256234 R 395960 CDS YP_001993854.1 192293249 6412576 complement(5258097..5258426) 1 NC_011004.1 KEGG: bja:blr2441 hypothetical protein; hypothetical protein 5258426 6412576 Rpal_4890 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993854.1 5258097 R 395960 CDS YP_001993855.1 192293250 6412577 complement(5258434..5259240) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:blr2440 ABC transporter permease protein; ABC transporter inner membrane protein 5259240 6412577 Rpal_4891 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001993855.1 5258434 R 395960 CDS YP_001993856.1 192293251 6412578 complement(5259240..5260142) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_2224 ABC transporter permease protein; ABC transporter inner membrane protein 5260142 6412578 Rpal_4892 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001993856.1 5259240 R 395960 CDS YP_001993857.1 192293252 6412579 complement(5260142..5261242) 1 NC_011004.1 PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: bra:BRADO1910 ATP-binding protein of sugar ABC transporter; ABC transporter 5261242 6412579 Rpal_4893 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993857.1 5260142 R 395960 CDS YP_001993858.1 192293253 6412580 complement(5261255..5262334) 1 NC_011004.1 PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: bja:blr2437 ABC transporter ATP-binding protein; ABC transporter 5262334 6412580 Rpal_4894 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001993858.1 5261255 R 395960 CDS YP_001993859.1 192293254 6412581 complement(5262331..5263866) 1 NC_011004.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 5263866 glpD 6412581 glpD Rhodopseudomonas palustris TIE-1 glycerol-3-phosphate dehydrogenase YP_001993859.1 5262331 R 395960 CDS YP_001993860.1 192293255 6412582 complement(5264062..5264859) 1 NC_011004.1 PFAM: regulatory protein DeoR; KEGG: bja:blr2433 transcriptional regulatory protein; DeoR family transcriptional regulator 5264859 6412582 Rpal_4896 Rhodopseudomonas palustris TIE-1 DeoR family transcriptional regulator YP_001993860.1 5264062 R 395960 CDS YP_001993861.1 192293256 6412583 5264958..5265278 1 NC_011004.1 hypothetical protein 5265278 6412583 Rpal_4897 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993861.1 5264958 D 395960 CDS YP_001993862.1 192293257 6412584 complement(5265995..5266153) 1 NC_011004.1 hypothetical protein 5266153 6412584 Rpal_4898 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993862.1 5265995 R 395960 CDS YP_001993863.1 192293258 6412585 complement(5266674..5267291) 1 NC_011004.1 KEGG: bja:blr2425 hypothetical protein; hypothetical protein 5267291 6412585 Rpal_4899 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993863.1 5266674 R 395960 CDS YP_001993864.1 192293259 6412586 complement(5267309..5267923) 1 NC_011004.1 PFAM: regulatory protein TetR; KEGG: nha:Nham_1083 transcriptional regulator, TetR family; TetR family transcriptional regulator 5267923 6412586 Rpal_4900 Rhodopseudomonas palustris TIE-1 TetR family transcriptional regulator YP_001993864.1 5267309 R 395960 CDS YP_001993865.1 192293260 6412587 complement(5267941..5271078) 1 NC_011004.1 PFAM: acriflavin resistance protein; KEGG: bja:blr2423 cation efflux system protein; acriflavin resistance protein 5271078 6412587 Rpal_4901 Rhodopseudomonas palustris TIE-1 acriflavin resistance protein YP_001993865.1 5267941 R 395960 CDS YP_001993866.1 192293261 6412588 complement(5271100..5272206) 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO1901 component of multidrug efflux system; signal peptide; RND family efflux transporter MFP subunit 5272206 6412588 Rpal_4902 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001993866.1 5271100 R 395960 CDS YP_001993867.1 192293262 6412589 complement(5272326..5272805) 1 NC_011004.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bja:blr2409 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase 5272805 6412589 Rpal_4903 Rhodopseudomonas palustris TIE-1 3-demethylubiquinone-9 3-methyltransferase YP_001993867.1 5272326 R 395960 CDS YP_001993868.1 192293263 6412590 complement(5272912..5275533) 1 NC_011004.1 KEGG: bbt:BBta_4427 sensor histidine kinase with PAS/PAC and response regulator receiver domains; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; multi-sensor hybrid histidine kinase 5275533 6412590 Rpal_4904 Rhodopseudomonas palustris TIE-1 multi-sensor hybrid histidine kinase YP_001993868.1 5272912 R 395960 CDS YP_001993869.1 192293264 6412591 5275925..5276140 1 NC_011004.1 PFAM: CsbD family protein; KEGG: bbt:BBta_2201 hypothetical protein; CsbD family protein 5276140 6412591 Rpal_4905 Rhodopseudomonas palustris TIE-1 CsbD family protein YP_001993869.1 5275925 D 395960 CDS YP_001993870.1 192293265 6412592 complement(5276245..5277831) 1 NC_011004.1 KEGG: bra:BRADO1881 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 5277831 6412592 Rpal_4906 Rhodopseudomonas palustris TIE-1 gamma-glutamyltransferase YP_001993870.1 5276245 R 395960 CDS YP_001993871.1 192293266 6412593 5278079..5278294 1 NC_011004.1 PFAM: SlyX family protein; KEGG: bja:bsl2402 hypothetical protein; SlyX family protein 5278294 6412593 Rpal_4907 Rhodopseudomonas palustris TIE-1 SlyX family protein YP_001993871.1 5278079 D 395960 CDS YP_001993872.1 192293267 6412594 complement(5278446..5279984) 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cak:Caul_0814 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 5279984 6412594 Rpal_4908 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001993872.1 5278446 R 395960 CDS YP_001993873.1 192293268 6412595 complement(5280331..5280996) 1 NC_011004.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: bja:bll2244 probable cAMP-regulatory protein; Crp/Fnr family transcriptional regulator 5280996 6412595 Rpal_4909 Rhodopseudomonas palustris TIE-1 Crp/Fnr family transcriptional regulator YP_001993873.1 5280331 R 395960 CDS YP_001993874.1 192293269 6412596 complement(5281175..5281588) 1 NC_011004.1 KEGG: bra:BRADO6425 hypothetical protein; hypothetical protein 5281588 6412596 Rpal_4910 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993874.1 5281175 R 395960 CDS YP_001993875.1 192293270 6412597 5281729..5282577 1 NC_011004.1 PFAM: beta-lactamase domain protein; KEGG: bja:blr7890 beta-lactamase; beta-lactamase domain-containing protein 5282577 6412597 Rpal_4911 Rhodopseudomonas palustris TIE-1 beta-lactamase domain-containing protein YP_001993875.1 5281729 D 395960 CDS YP_001993876.1 192293271 6412598 5282687..5283529 1 NC_011004.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:blr7891 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 5283529 6412598 Rpal_4912 Rhodopseudomonas palustris TIE-1 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_001993876.1 5282687 D 395960 CDS YP_001993877.1 192293272 6412599 5283648..5284265 1 NC_011004.1 PFAM: glutathione S-transferase domain; KEGG: bra:BRADO6428 glutathione S-transferase; glutathione S-transferase domain-containing protein 5284265 6412599 Rpal_4913 Rhodopseudomonas palustris TIE-1 glutathione S-transferase domain-containing protein YP_001993877.1 5283648 D 395960 CDS YP_001993878.1 192293273 6412600 complement(5284284..5284835) 1 NC_011004.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: bbt:BBta_1204 methylated-DNA-protein-cystein methyltransferase; methylated-DNA--protein-cysteine methyltransferase 5284835 6412600 Rpal_4914 Rhodopseudomonas palustris TIE-1 methylated-DNA--protein-cysteine methyltransferase YP_001993878.1 5284284 R 395960 CDS YP_001993879.1 192293274 6412601 complement(5284879..5285427) 1 NC_011004.1 KEGG: spq:SPAB_04619 hypothetical protein; hypothetical protein 5285427 6412601 Rpal_4915 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993879.1 5284879 R 395960 CDS YP_001993880.1 192293275 6412602 complement(5285539..5286684) 1 NC_011004.1 PFAM: PepSY-associated TM helix domain protein; KEGG: bja:bll7967 similar to iron-uptake factor; PepSY-associated TM helix domain-containing protein 5286684 6412602 Rpal_4916 Rhodopseudomonas palustris TIE-1 PepSY-associated TM helix domain-containing protein YP_001993880.1 5285539 R 395960 CDS YP_001993881.1 192293276 6412603 complement(5286689..5289025) 1 NC_011004.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbt:BBta_6052 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 5289025 6412603 Rpal_4917 Rhodopseudomonas palustris TIE-1 TonB-dependent siderophore receptor YP_001993881.1 5286689 R 395960 CDS YP_001993882.1 192293277 6412604 complement(5289211..5289795) 1 NC_011004.1 KEGG: bja:blr1408 hypothetical protein; hypothetical protein 5289795 6412604 Rpal_4918 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993882.1 5289211 R 395960 CDS YP_001993883.1 192293278 6412610 5296343..5298373 1 NC_011004.1 PFAM: peptidase M23; KEGG: nha:Nham_0660 peptidase M23B; peptidase M23 5298373 6412610 Rpal_4919 Rhodopseudomonas palustris TIE-1 peptidase M23 YP_001993883.1 5296343 D 395960 CDS YP_001993884.1 192293279 6412611 5298520..5300148 1 NC_011004.1 PFAM: NHL repeat containing protein; KEGG: bja:bll1406 hypothetical protein; NHL repeat containing protein 5300148 6412611 Rpal_4920 Rhodopseudomonas palustris TIE-1 NHL repeat containing protein YP_001993884.1 5298520 D 395960 CDS YP_001993885.1 192293280 6412612 complement(5300426..5303065) 1 NC_011004.1 KEGG: bbt:BBta_1195 chaperone; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; Clp domain protein; ATPase AAA; ATPase AAA-2 domain protein; SMART: ATPase AAA; ATP-dependent chaperone ClpB 5303065 6412612 Rpal_4921 Rhodopseudomonas palustris TIE-1 ATP-dependent chaperone ClpB YP_001993885.1 5300426 R 395960 CDS YP_001993886.1 192293281 6412613 5303292..5304080 1 NC_011004.1 PFAM: MOSC domain containing protein; KEGG: nha:Nham_0680 hypothetical protein; MOSC domain-containing protein 5304080 6412613 Rpal_4922 Rhodopseudomonas palustris TIE-1 MOSC domain-containing protein YP_001993886.1 5303292 D 395960 CDS YP_001993887.1 192293282 6412614 complement(5304287..5305030) 1 NC_011004.1 KEGG: bbt:BBta_1193 exported protein of unknown function; hypothetical protein 5305030 6412614 Rpal_4923 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993887.1 5304287 R 395960 CDS YP_001993888.1 192293283 6412615 complement(5305252..5305947) 1 NC_011004.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; methyltransferase type 11; methyltransferase type 12; KEGG: nwi:Nwi_0586 methionine biosynthesis MetW; methionine biosynthesis protein MetW 5305947 6412615 Rpal_4924 Rhodopseudomonas palustris TIE-1 methionine biosynthesis protein MetW YP_001993888.1 5305252 R 395960 CDS YP_001993889.1 192293284 6412616 complement(5305950..5307149) 1 NC_011004.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 5307149 metX 6412616 metX Rhodopseudomonas palustris TIE-1 homoserine O-acetyltransferase YP_001993889.1 5305950 R 395960 CDS YP_001993890.1 192293285 6412617 5307505..5308350 1 NC_011004.1 PFAM: Chorismate mutase; KEGG: nha:Nham_0675 hypothetical protein; hypothetical protein 5308350 6412617 Rpal_4926 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993890.1 5307505 D 395960 CDS YP_001993891.1 192293286 6412618 5308393..5309490 1 NC_011004.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 5309490 6412618 Rpal_4927 Rhodopseudomonas palustris TIE-1 histidinol-phosphate aminotransferase YP_001993891.1 5308393 D 395960 CDS YP_001993892.1 192293287 6412619 5309487..5310428 1 NC_011004.1 dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate; cyclohexadienyl dehydrogenase 5310428 6412619 Rpal_4928 Rhodopseudomonas palustris TIE-1 cyclohexadienyl dehydrogenase YP_001993892.1 5309487 D 395960 CDS YP_001993893.1 192293288 6412620 5310881..5311159 1 NC_011004.1 PFAM: protein of unknown function DUF497; KEGG: mrd:Mrad2831_1006 hypothetical protein; hypothetical protein 5311159 6412620 Rpal_4929 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993893.1 5310881 D 395960 CDS YP_001993894.1 192293289 6412621 5311113..5311424 1 NC_011004.1 KEGG: mrd:Mrad2831_1007 hypothetical protein; hypothetical protein 5311424 6412621 Rpal_4930 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993894.1 5311113 D 395960 CDS YP_001993895.1 192293290 6412622 complement(5311503..5312483) 1 NC_011004.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: nha:Nham_0762 Mg2+ transporter protein, CorA-like; Mg2 transporter protein CorA family protein 5312483 6412622 Rpal_4931 Rhodopseudomonas palustris TIE-1 Mg2 transporter protein CorA family protein YP_001993895.1 5311503 R 395960 CDS YP_001993896.1 192293291 6412623 5312830..5313513 1 NC_011004.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: nwi:Nwi_0619 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 5313513 6412623 Rpal_4932 Rhodopseudomonas palustris TIE-1 ErfK/YbiS/YcfS/YnhG family protein YP_001993896.1 5312830 D 395960 CDS YP_001993897.1 192293292 6412624 complement(5313845..5314924) 1 NC_011004.1 PFAM: Extensin family protein; KEGG: bra:BRADO2141 hypothetical protein; extensin family protein 5314924 6412624 Rpal_4933 Rhodopseudomonas palustris TIE-1 extensin family protein YP_001993897.1 5313845 R 395960 CDS YP_001993898.1 192293293 6412625 5315045..5316673 1 NC_011004.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 5316673 6412625 Rpal_4934 Rhodopseudomonas palustris TIE-1 acyl-CoA synthetase YP_001993898.1 5315045 D 395960 CDS YP_001993899.1 192293294 6412626 5316977..5317345 1 NC_011004.1 PFAM: protein of unknown function DUF559; KEGG: nwi:Nwi_2534 protein of unknown function DUF559; hypothetical protein 5317345 6412626 Rpal_4935 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993899.1 5316977 D 395960 CDS YP_001993900.1 192293295 6412627 5317639..5318484 1 NC_011004.1 KEGG: bja:bll2618 hypothetical protein; hypothetical protein 5318484 6412627 Rpal_4936 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993900.1 5317639 D 395960 CDS YP_001993901.1 192293296 6412628 complement(5318565..5318864) 1 NC_011004.1 KEGG: bbt:BBta_6131 exported protein of unknown function; hypothetical protein 5318864 6412628 Rpal_4937 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993901.1 5318565 R 395960 CDS YP_001993902.1 192293297 6412629 complement(5318943..5319386) 1 NC_011004.1 KEGG: azc:AZC_2428 hypothetical protein; hypothetical protein 5319386 6412629 Rpal_4938 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993902.1 5318943 R 395960 CDS YP_001993903.1 192293298 6412630 complement(5319383..5319802) 1 NC_011004.1 KEGG: pla:Plav_0952 hypothetical protein; hypothetical protein 5319802 6412630 Rpal_4939 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993903.1 5319383 R 395960 CDS YP_001993904.1 192293299 6412631 complement(5319799..5320548) 1 NC_011004.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 5320548 6412631 Rpal_4940 Rhodopseudomonas palustris TIE-1 RNA polymerase sigma factor YP_001993904.1 5319799 R 395960 CDS YP_001993905.1 192293300 6412632 5321317..5323008 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bra:BRADO2557 methyl-accepting chemotaxis receptor/sensory transducer; methyl-accepting chemotaxis sensory transducer 5323008 6412632 Rpal_4941 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001993905.1 5321317 D 395960 CDS YP_001993906.1 192293301 6412633 5323217..5324812 1 NC_011004.1 KEGG: bja:bll5850 hypothetical protein; hypothetical protein 5324812 6412633 Rpal_4942 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993906.1 5323217 D 395960 CDS YP_001993907.1 192293302 6412634 5324802..5326037 1 NC_011004.1 KEGG: bja:bll5849 hypothetical protein; hypothetical protein 5326037 6412634 Rpal_4943 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993907.1 5324802 D 395960 CDS YP_001993908.1 192293303 6412635 5326034..5327494 1 NC_011004.1 PFAM: pyridoxal-dependent decarboxylase; KEGG: nha:Nham_1334 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase 5327494 6412635 Rpal_4944 Rhodopseudomonas palustris TIE-1 pyridoxal-dependent decarboxylase YP_001993908.1 5326034 D 395960 CDS YP_001993909.1 192293304 6412636 complement(5327773..5328600) 1 NC_011004.1 PFAM: metallophosphoesterase; KEGG: nha:Nham_3527 hypothetical protein; metallophosphoesterase 5328600 6412636 Rpal_4945 Rhodopseudomonas palustris TIE-1 metallophosphoesterase YP_001993909.1 5327773 R 395960 CDS YP_001993910.1 192293305 6412637 complement(5328602..5329195) 1 NC_011004.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: bra:BRADO1138 antifreeze protein, type I : 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 5329195 6412637 Rpal_4946 Rhodopseudomonas palustris TIE-1 5-formyltetrahydrofolate cyclo-ligase YP_001993910.1 5328602 R 395960 CDS YP_001993911.1 192293306 6412639 5329550..5330068 1 NC_011004.1 KEGG: bra:BRADO4648 hypothetical protein; hypothetical protein 5330068 6412639 Rpal_4947 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993911.1 5329550 D 395960 CDS YP_001993912.1 192293307 6412640 complement(5330082..5330261) 1 NC_011004.1 hypothetical protein 5330261 6412640 Rpal_4948 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993912.1 5330082 R 395960 CDS YP_001993913.1 192293308 6412641 5330342..5330881 1 NC_011004.1 KEGG: mxa:MXAN_4460 valyl-tRNA synthetase; valyl-tRNA synthetase 5330881 6412641 Rpal_4949 Rhodopseudomonas palustris TIE-1 valyl-tRNA synthetase YP_001993913.1 5330342 D 395960 CDS YP_001993914.1 192293309 6412642 complement(5330963..5331352) 1 NC_011004.1 PFAM: rhodanese domain protein; KEGG: bra:BRADO5552 rhodanese-related sulfurtransferase; rhodanese domain-containing protein 5331352 6412642 Rpal_4950 Rhodopseudomonas palustris TIE-1 rhodanese domain-containing protein YP_001993914.1 5330963 R 395960 CDS YP_001993915.1 192293310 6412643 complement(5331376..5331852) 1 NC_011004.1 PFAM: isoprenylcysteine carboxyl methyltransferase; KEGG: sme:SMc01259 hypothetical protein; isoprenylcysteine carboxyl methyltransferase 5331852 6412643 Rpal_4951 Rhodopseudomonas palustris TIE-1 isoprenylcysteine carboxyl methyltransferase YP_001993915.1 5331376 R 395960 CDS YP_001993916.1 192293311 6412644 complement(5331877..5333169) 1 NC_011004.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xau:Xaut_1514 flavocytochrome C sulphide dehydrogenase flavin-binding; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 5333169 6412644 Rpal_4952 Rhodopseudomonas palustris TIE-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001993916.1 5331877 R 395960 CDS YP_001993917.1 192293312 6412645 complement(5333209..5334474) 1 NC_011004.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome C sulphide dehydrogenase flavin-binding; KEGG: xau:Xaut_1514 flavocytochrome C sulphide dehydrogenase flavin-binding; flavocytochrome c sulfide dehydrogenase 5334474 6412645 Rpal_4953 Rhodopseudomonas palustris TIE-1 flavocytochrome c sulfide dehydrogenase YP_001993917.1 5333209 R 395960 CDS YP_001993918.1 192293313 6412646 complement(5334502..5334921) 1 NC_011004.1 KEGG: sil:SPO1000 diheme cytochrome C SoxE; cytochrome c553-like protein 5334921 6412646 Rpal_4954 Rhodopseudomonas palustris TIE-1 cytochrome c553-like protein YP_001993918.1 5334502 R 395960 CDS YP_001993919.1 192293314 6412647 complement(5334961..5336073) 1 NC_011004.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dar:Daro_3126 YeeE/YedE; hypothetical protein 5336073 6412647 Rpal_4955 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993919.1 5334961 R 395960 CDS YP_001993920.1 192293315 6412648 complement(5336285..5337040) 1 NC_011004.1 KEGG: bra:BRADO3185 sulfite oxidase cytochrome subunit (SoxD); sulfite oxidase cytochrome subunit SoxD 5337040 6412648 Rpal_4956 Rhodopseudomonas palustris TIE-1 sulfite oxidase cytochrome subunit SoxD YP_001993920.1 5336285 R 395960 CDS YP_001993921.1 192293316 6412649 complement(5337024..5338319) 1 NC_011004.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: xau:Xaut_1518 oxidoreductase molybdopterin binding; molybdopterin binding oxidoreductase 5338319 6412649 Rpal_4957 Rhodopseudomonas palustris TIE-1 molybdopterin binding oxidoreductase YP_001993921.1 5337024 R 395960 CDS YP_001993922.1 192293317 6412650 complement(5338389..5340086) 1 NC_011004.1 PFAM: 5'-nucleotidase; KEGG: xau:Xaut_1519 5'-nucleotidase domain protein; 5'-nucleotidase 5340086 6412650 Rpal_4958 Rhodopseudomonas palustris TIE-1 5'-nucleotidase YP_001993922.1 5338389 R 395960 CDS YP_001993923.1 192293318 6412651 complement(5340229..5340558) 1 NC_011004.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: xau:Xaut_1520 sulphur oxidation protein SoxZ; sulfur oxidation protein SoxZ 5340558 6412651 Rpal_4959 Rhodopseudomonas palustris TIE-1 sulfur oxidation protein SoxZ YP_001993923.1 5340229 R 395960 CDS YP_001993924.1 192293319 6412652 complement(5340597..5341061) 1 NC_011004.1 with SoxZ catalyzes the oxidation of sulfur compounds; sulfur oxidation protein SoxY 5341061 6412652 Rpal_4960 Rhodopseudomonas palustris TIE-1 sulfur oxidation protein SoxY YP_001993924.1 5340597 R 395960 CDS YP_001993925.1 192293320 6412653 5341248..5342069 1 NC_011004.1 KEGG: xau:Xaut_1522 hypothetical protein; hypothetical protein 5342069 6412653 Rpal_4961 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993925.1 5341248 D 395960 CDS YP_001993926.1 192293321 6412654 5342083..5342826 1 NC_011004.1 KEGG: xau:Xaut_1523 hypothetical protein; hypothetical protein 5342826 6412654 Rpal_4962 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993926.1 5342083 D 395960 CDS YP_001993927.1 192293322 6412655 5342998..5343495 1 NC_011004.1 PFAM: protein of unknown function DUF336; KEGG: nha:Nham_3668 protein of unknown function DUF336; hypothetical protein 5343495 6412655 Rpal_4963 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993927.1 5342998 D 395960 CDS YP_001993928.1 192293323 6412656 complement(5343772..5344365) 1 NC_011004.1 KEGG: bja:blr3510 probable thioredoxin; thioredoxin 5344365 6412656 Rpal_4964 Rhodopseudomonas palustris TIE-1 thioredoxin YP_001993928.1 5343772 R 395960 CDS YP_001993929.1 192293324 6412657 complement(5344394..5345137) 1 NC_011004.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: bcs:BCAN_B0584 cytochrome C biogenesis protein transmembrane region; cytochrome c biogenesis protein transmembrane protein 5345137 6412657 Rpal_4965 Rhodopseudomonas palustris TIE-1 cytochrome c biogenesis protein transmembrane protein YP_001993929.1 5344394 R 395960 CDS YP_001993930.1 192293325 6412658 5345178..5345582 1 NC_011004.1 KEGG: xau:Xaut_1526 hypothetical protein; hypothetical protein 5345582 6412658 Rpal_4966 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993930.1 5345178 D 395960 CDS YP_001993931.1 192293326 6412659 5345621..5345995 1 NC_011004.1 PFAM: regulatory protein ArsR; KEGG: xau:Xaut_1527 regulatory protein ArsR; ArsR family transcriptional regulator 5345995 6412659 Rpal_4967 Rhodopseudomonas palustris TIE-1 ArsR family transcriptional regulator YP_001993931.1 5345621 D 395960 CDS YP_001993932.1 192293327 6412660 5346072..5347274 1 NC_011004.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: xau:Xaut_1528 protein of unknown function DUF395 YeeE/YedE; hypothetical protein 5347274 6412660 Rpal_4968 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993932.1 5346072 D 395960 CDS YP_001993933.1 192293328 6412661 complement(5347189..5347641) 1 NC_011004.1 PFAM: Domain of unknown function DUF1791; KEGG: bra:BRADO1133 conserved hypothetical protein; signal peptide; YchN-like; hypothetical protein 5347641 6412661 Rpal_4969 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993933.1 5347189 R 395960 CDS YP_001993934.1 192293329 6412662 complement(5347873..5348928) 1 NC_011004.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: nha:Nham_2696 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 5348928 6412662 Rpal_4970 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993934.1 5347873 R 395960 CDS YP_001993935.1 192293330 6412663 complement(5349128..5349433) 1 NC_011004.1 KEGG: bbt:BBta_6241 hypothetical protein; hypothetical protein 5349433 6412663 Rpal_4971 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993935.1 5349128 R 395960 CDS YP_001993936.1 192293331 6412664 complement(5349430..5352525) 1 NC_011004.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: bja:blr4112 probable cation efflux system protein; CzcA family heavy metal efflux pump 5352525 6412664 Rpal_4972 Rhodopseudomonas palustris TIE-1 CzcA family heavy metal efflux pump YP_001993936.1 5349430 R 395960 CDS YP_001993937.1 192293332 6412665 complement(5352526..5353632) 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: dar:Daro_2800 secretion protein HlyD; RND family efflux transporter MFP subunit 5353632 6412665 Rpal_4973 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001993937.1 5352526 R 395960 CDS YP_001993938.1 192293333 6412666 complement(5353828..5355150) 1 NC_011004.1 PFAM: chemotaxis sensory transducer; KEGG: bja:blr2976 methyl accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 5355150 6412666 Rpal_4974 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001993938.1 5353828 R 395960 CDS YP_001993939.1 192293334 6412667 complement(5355113..5355649) 1 NC_011004.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: bja:blr2975 hypothetical protein; PAS/PAC sensor protein 5355649 6412667 Rpal_4975 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor protein YP_001993939.1 5355113 R 395960 CDS YP_001993940.1 192293335 6412668 complement(5355819..5357141) 1 NC_011004.1 PFAM: chemotaxis sensory transducer; KEGG: bja:blr2976 methyl accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 5357141 6412668 Rpal_4976 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001993940.1 5355819 R 395960 CDS YP_001993941.1 192293336 6412669 complement(5357104..5357637) 1 NC_011004.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; KEGG: rru:Rru_A2378 transcriptional regulator with PAS/PAC domain; PAS/PAC sensor protein 5357637 6412669 Rpal_4977 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor protein YP_001993941.1 5357104 R 395960 CDS YP_001993942.1 192293337 6412670 complement(5357814..5358863) 1 NC_011004.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: bbt:BBta_2321 adenine glycosylase MutY; A/G-specific adenine glycosylase 5358863 6412670 Rpal_4978 Rhodopseudomonas palustris TIE-1 A/G-specific adenine glycosylase YP_001993942.1 5357814 R 395960 CDS YP_001993943.1 192293338 6412671 5358970..5359449 1 NC_011004.1 PFAM: protein of unknown function DUF1159; KEGG: nha:Nham_3228 protein of unknown function DUF1159; hypothetical protein 5359449 6412671 Rpal_4979 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993943.1 5358970 D 395960 CDS YP_001993944.1 192293339 6412672 5359592..5360266 1 NC_011004.1 PFAM: DSBA oxidoreductase; KEGG: bra:BRADO2001 conserved hypothetical protein; signal peptide; twin-arginine translocation signal domain protein; DSBA oxidoreductase 5360266 6412672 Rpal_4980 Rhodopseudomonas palustris TIE-1 DSBA oxidoreductase YP_001993944.1 5359592 D 395960 CDS YP_001993945.1 192293340 6412673 5360576..5360809 1 NC_011004.1 hypothetical protein 5360809 6412673 Rpal_4981 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993945.1 5360576 D 395960 CDS YP_001993946.1 192293341 6412674 5360806..5361021 1 NC_011004.1 hypothetical protein 5361021 6412674 Rpal_4982 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993946.1 5360806 D 395960 CDS YP_001993947.1 192293342 6412675 5362130..5365594 1 NC_011004.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: bja:bll2496 chromosome segregation protein; chromosome segregation protein SMC 5365594 6412675 Rpal_4983 Rhodopseudomonas palustris TIE-1 chromosome segregation protein SMC YP_001993947.1 5362130 D 395960 CDS YP_001993948.1 192293343 6412676 5365869..5366837 1 NC_011004.1 PFAM: ribosomal small subunit Rsm22; KEGG: nha:Nham_3231 methyltransferase type 12; ribosomal small subunit Rsm22 5366837 6412676 Rpal_4984 Rhodopseudomonas palustris TIE-1 ribosomal small subunit Rsm22 YP_001993948.1 5365869 D 395960 CDS YP_001993949.1 192293344 6412677 5366953..5367504 1 NC_011004.1 PFAM: LemA family protein; KEGG: nha:Nham_3233 LemA; LemA family protein 5367504 6412677 Rpal_4985 Rhodopseudomonas palustris TIE-1 LemA family protein YP_001993949.1 5366953 D 395960 CDS YP_001993950.1 192293345 6412678 5367640..5368830 1 NC_011004.1 PFAM: peptidase M48 Ste24p; peptidase M56 BlaR1; KEGG: bbt:BBta_2314 protease HtpX; peptidase M48 Ste24p 5368830 6412678 Rpal_4986 Rhodopseudomonas palustris TIE-1 peptidase M48 Ste24p YP_001993950.1 5367640 D 395960 CDS YP_001993951.1 192293346 6412679 5369011..5369784 1 NC_011004.1 KEGG: bja:bll2492 hypothetical protein; hypothetical protein 5369784 6412679 Rpal_4987 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993951.1 5369011 D 395960 CDS YP_001993952.1 192293347 6412680 5369843..5370508 1 NC_011004.1 KEGG: nha:Nham_3236 hypothetical protein; hypothetical protein 5370508 6412680 Rpal_4988 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993952.1 5369843 D 395960 CDS YP_001993953.1 192293348 6412681 5370706..5371668 1 NC_011004.1 PFAM: transposase IS4 family protein; KEGG: atc:AGR_L_863gl hypothetical protein; transposase IS4 family protein 5371668 6412681 Rpal_4989 Rhodopseudomonas palustris TIE-1 transposase IS4 family protein YP_001993953.1 5370706 D 395960 CDS YP_001993954.1 192293349 6412682 complement(5371936..5372481) 1 NC_011004.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 5372481 6412682 Rpal_4990 Rhodopseudomonas palustris TIE-1 adenine phosphoribosyltransferase YP_001993954.1 5371936 R 395960 CDS YP_001993955.1 192293350 6412683 complement(5372632..5374791) 1 NC_011004.1 trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; anthranilate synthase 5374791 6412683 Rpal_4991 Rhodopseudomonas palustris TIE-1 anthranilate synthase YP_001993955.1 5372632 R 395960 CDS YP_001993956.1 192293351 6412684 5375882..5376058 1 NC_011004.1 KEGG: bbt:BBta_1659 hypothetical protein; hypothetical protein 5376058 6412684 Rpal_4992 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993956.1 5375882 D 395960 CDS YP_001993957.1 192293352 6412685 complement(5376095..5376313) 1 NC_011004.1 PFAM: PhnA protein; KEGG: sme:SMc00099 probable alkylphosphonate uptake protein; PhnA protein 5376313 6412685 Rpal_4993 Rhodopseudomonas palustris TIE-1 PhnA protein YP_001993957.1 5376095 R 395960 CDS YP_001993958.1 192293353 6412686 complement(5376447..5377136) 1 NC_011004.1 PFAM: OmpW family protein; KEGG: bbt:BBta_0946 outer membrane protein precursor of unknown function; OmpW family protein 5377136 6412686 Rpal_4994 Rhodopseudomonas palustris TIE-1 OmpW family protein YP_001993958.1 5376447 R 395960 CDS YP_001993959.1 192293354 6412687 complement(5377369..5377629) 1 NC_011004.1 KEGG: bja:bsr1310 hypothetical protein; hypothetical protein 5377629 6412687 Rpal_4995 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993959.1 5377369 R 395960 CDS YP_001993960.1 192293355 6412688 complement(5377808..5379718) 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bbt:BBta_0943 propionate--CoA ligase; AMP-dependent synthetase and ligase 5379718 6412688 Rpal_4996 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001993960.1 5377808 R 395960 CDS YP_001993961.1 192293356 6412689 complement(5379899..5380645) 1 NC_011004.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bbt:BBta_0942 hypothetical protein; hypothetical protein 5380645 6412689 Rpal_4997 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993961.1 5379899 R 395960 CDS YP_001993962.1 192293357 6412690 complement(5380831..5381634) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr1304 dehydrogenase; short-chain dehydrogenase/reductase SDR 5381634 6412690 Rpal_4998 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001993962.1 5380831 R 395960 CDS YP_001993963.1 192293358 6412691 complement(5381734..5383509) 1 NC_011004.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: azc:AZC_3721 elongator protein; radical SAM domain-containing protein 5383509 6412691 Rpal_4999 Rhodopseudomonas palustris TIE-1 radical SAM domain-containing protein YP_001993963.1 5381734 R 395960 CDS YP_001993964.1 192293359 6412692 complement(5383657..5384019) 1 NC_011004.1 PFAM: Domain of unknown function DUF1850; KEGG: bja:blr1303 hypothetical protein; hypothetical protein 5384019 6412692 Rpal_5000 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993964.1 5383657 R 395960 CDS YP_001993965.1 192293360 6412693 complement(5384028..5386148) 1 NC_011004.1 TIGRFAM: TRAP transporter 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bra:BRADO6597 transporter TrapT family, fused DctQ-M subunits, C4-dicarboxylate transport; TRAP transporter 4TM/12TM fusion protein 5386148 6412693 Rpal_5001 Rhodopseudomonas palustris TIE-1 TRAP transporter 4TM/12TM fusion protein YP_001993965.1 5384028 R 395960 CDS YP_001993966.1 192293361 6412694 complement(5386295..5387242) 1 NC_011004.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bja:blr1301 immunogenic protein precursor; TRAP transporter solute receptor, TAXI family 5387242 6412694 Rpal_5002 Rhodopseudomonas palustris TIE-1 TRAP transporter solute receptor, TAXI family YP_001993966.1 5386295 R 395960 CDS YP_001993967.1 192293362 6412695 5387398..5388663 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_2491 major facilitator superfamily MFS_1; major facilitator superfamily protein 5388663 6412695 Rpal_5003 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001993967.1 5387398 D 395960 CDS YP_001993968.1 192293363 6412696 complement(5388681..5389037) 1 NC_011004.1 PFAM: response regulator receiver; KEGG: rsq:Rsph17025_3337 hypothetical protein; response regulator receiver protein 5389037 6412696 Rpal_5004 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001993968.1 5388681 R 395960 CDS YP_001993969.1 192293364 6412697 complement(5389047..5390051) 1 NC_011004.1 PFAM: HWE histidine kinase; KEGG: rsq:Rsph17025_3338 hypothetical protein; signal transduction histidine kinase 5390051 6412697 Rpal_5005 Rhodopseudomonas palustris TIE-1 signal transduction histidine kinase YP_001993969.1 5389047 R 395960 CDS YP_001993970.1 192293365 6412698 5390273..5391832 1 NC_011004.1 KEGG: bay:RBAM_002930 PhoD; alkaline phosphatase 5391832 6412698 Rpal_5006 Rhodopseudomonas palustris TIE-1 alkaline phosphatase YP_001993970.1 5390273 D 395960 CDS YP_001993971.1 192293366 6412699 5391968..5392975 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: reh:H16_B0202 probable extra-cytoplasmic solute receptor; hypothetical protein 5392975 6412699 Rpal_5007 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993971.1 5391968 D 395960 CDS YP_001993972.1 192293367 6412700 5393217..5394431 1 NC_011004.1 PFAM: EAL domain protein; KEGG: bja:blr0402 two-component response regulator; diguanylate phosphodiesterase 5394431 6412700 Rpal_5008 Rhodopseudomonas palustris TIE-1 diguanylate phosphodiesterase YP_001993972.1 5393217 D 395960 CDS YP_001993973.1 192293368 6412701 complement(5394448..5394936) 1 NC_011004.1 KEGG: bbt:BBta_0936 exported protein of unknown function; hypothetical protein 5394936 6412701 Rpal_5009 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993973.1 5394448 R 395960 CDS YP_001993974.1 192293369 6412702 5395182..5395484 1 NC_011004.1 KEGG: bja:bll1299 hypothetical protein; hypothetical protein 5395484 6412702 Rpal_5010 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993974.1 5395182 D 395960 CDS YP_001993975.1 192293370 6412703 complement(5395503..5396714) 1 NC_011004.1 KEGG: nwi:Nwi_0278 hypothetical protein; hypothetical protein 5396714 6412703 Rpal_5011 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993975.1 5395503 R 395960 CDS YP_001993976.1 192293371 6412704 complement(5396850..5397476) 1 NC_011004.1 PFAM: NUDIX hydrolase; KEGG: bja:blr1297 hypothetical protein; NUDIX hydrolase 5397476 6412704 Rpal_5012 Rhodopseudomonas palustris TIE-1 NUDIX hydrolase YP_001993976.1 5396850 R 395960 CDS YP_001993977.1 192293372 6412705 5397556..5397981 1 NC_011004.1 PFAM: thioesterase superfamily protein; KEGG: bja:bll1296 hypothetical protein; thioesterase superfamily protein 5397981 6412705 Rpal_5013 Rhodopseudomonas palustris TIE-1 thioesterase superfamily protein YP_001993977.1 5397556 D 395960 CDS YP_001993978.1 192293373 6412706 complement(5397997..5398743) 1 NC_011004.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mrd:Mrad2831_3556 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase 5398743 6412706 Rpal_5014 Rhodopseudomonas palustris TIE-1 HAD family hydrolase YP_001993978.1 5397997 R 395960 CDS YP_001993979.1 192293374 6412707 complement(5399019..5399408) 1 NC_011004.1 PFAM: response regulator receiver; KEGG: bbt:BBta_3939 two-component response regulatory protein, response regulator receiver; response regulator receiver protein 5399408 6412707 Rpal_5015 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001993979.1 5399019 R 395960 CDS YP_001993980.1 192293375 6412708 complement(5399701..5400450) 1 NC_011004.1 KEGG: mrd:Mrad2831_6503 hypothetical protein; hypothetical protein 5400450 6412708 Rpal_5016 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993980.1 5399701 R 395960 CDS YP_001993981.1 192293376 6412710 complement(5401039..5401221) 1 NC_011004.1 PFAM: protein of unknown function DUF329; KEGG: nwi:Nwi_0276 zinc-binding protein; zinc-binding protein 5401221 6412710 Rpal_5017 Rhodopseudomonas palustris TIE-1 zinc-binding protein YP_001993981.1 5401039 R 395960 CDS YP_001993982.1 192293377 6412711 complement(5401211..5401834) 1 NC_011004.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 5401834 6412711 Rpal_5018 Rhodopseudomonas palustris TIE-1 Maf-like protein YP_001993982.1 5401211 R 395960 CDS YP_001993983.1 192293378 6412712 complement(5401931..5403097) 1 NC_011004.1 KEGG: bxe:Bxe_A2255 predicted ATPase, RecF-like; RecF-like ATPase 5403097 6412712 Rpal_5019 Rhodopseudomonas palustris TIE-1 RecF-like ATPase YP_001993983.1 5401931 R 395960 CDS YP_001993984.1 192293379 6412713 complement(5403676..5404143) 1 NC_011004.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bra:BRADO6635 arsenate reductase (ArsC-like); protein tyrosine phosphatase 5404143 6412713 Rpal_5020 Rhodopseudomonas palustris TIE-1 protein tyrosine phosphatase YP_001993984.1 5403676 R 395960 CDS YP_001993985.1 192293380 6412714 complement(5404202..5404693) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bja:blr1257 hypothetical protein; hypothetical protein 5404693 6412714 Rpal_5021 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993985.1 5404202 R 395960 CDS YP_001993986.1 192293381 6412715 complement(5404690..5405985) 1 NC_011004.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 5405985 hisD 6412715 hisD Rhodopseudomonas palustris TIE-1 histidinol dehydrogenase YP_001993986.1 5404690 R 395960 CDS YP_001993987.1 192293382 6412716 complement(5406109..5406564) 1 NC_011004.1 KEGG: bra:BRADO6638 hypothetical protein; hypothetical protein 5406564 6412716 Rpal_5023 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993987.1 5406109 R 395960 CDS YP_001993988.1 192293383 6412717 complement(5406584..5407873) 1 NC_011004.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 5407873 6412717 Rpal_5024 Rhodopseudomonas palustris TIE-1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001993988.1 5406584 R 395960 CDS YP_001993989.1 192293384 6412718 complement(5408033..5408323) 1 NC_011004.1 KEGG: bbt:BBta_7859 exported protein of unknown function; hypothetical protein 5408323 6412718 Rpal_5025 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993989.1 5408033 R 395960 CDS YP_001993990.1 192293385 6412719 5408557..5408844 1 NC_011004.1 KEGG: bbt:BBta_4382 exported protein of unknown function; hypothetical protein 5408844 6412719 Rpal_5026 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993990.1 5408557 D 395960 CDS YP_001993991.1 192293386 6412720 complement(5408914..5410605) 1 NC_011004.1 PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: bbt:BBta_0894 nucleotide-disulphide oxidoreductase; cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulfide oxidoreductase 5410605 6412720 Rpal_5027 Rhodopseudomonas palustris TIE-1 cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001993991.1 5408914 R 395960 CDS YP_001993992.1 192293387 6412721 complement(5410637..5410846) 1 NC_011004.1 KEGG: bra:BRADO6641 hypothetical protein; hypothetical protein 5410846 6412721 Rpal_5028 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993992.1 5410637 R 395960 CDS YP_001993993.1 192293388 6412722 5410921..5411367 1 NC_011004.1 KEGG: rme:Rmet_1763 protein of unknown function DUF1486; hypothetical protein 5411367 6412722 Rpal_5029 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993993.1 5410921 D 395960 CDS YP_001993994.1 192293389 6412724 5411830..5412219 1 NC_011004.1 KEGG: nha:Nham_3021 hypothetical protein; hypothetical protein 5412219 6412724 Rpal_5030 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993994.1 5411830 D 395960 CDS YP_001993995.1 192293390 6412725 5412344..5413633 1 NC_011004.1 KEGG: nha:Nham_3782 hypothetical protein; hypothetical protein 5413633 6412725 Rpal_5031 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001993995.1 5412344 D 395960 CDS YP_001993996.1 192293391 6412726 complement(5413670..5414911) 1 NC_011004.1 KEGG: bja:bll6790 4-hydroxybutyrate CoA transferase; 4-hydroxybutyrate CoA-transferase 5414911 6412726 Rpal_5032 Rhodopseudomonas palustris TIE-1 4-hydroxybutyrate CoA-transferase YP_001993996.1 5413670 R 395960 CDS YP_001993997.1 192293392 6412727 complement(5414938..5416104) 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:bll6791 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 5416104 6412727 Rpal_5033 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001993997.1 5414938 R 395960 CDS YP_001993998.1 192293393 6412728 complement(5416157..5417446) 1 NC_011004.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:bll6792 transmembrane protein; TRAP dicarboxylate transporter subunit DctM 5417446 6412728 Rpal_5034 Rhodopseudomonas palustris TIE-1 TRAP dicarboxylate transporter subunit DctM YP_001993998.1 5416157 R 395960 CDS YP_001993999.1 192293394 6412729 complement(5417458..5418009) 1 NC_011004.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bja:bll6793 hypothetical protein; tripartite AtP-independent periplasmic transporter subunit DctQ 5418009 6412729 Rpal_5035 Rhodopseudomonas palustris TIE-1 tripartite AtP-independent periplasmic transporter subunit DctQ YP_001993999.1 5417458 R 395960 CDS YP_001994000.1 192293395 6412730 complement(5418043..5419068) 1 NC_011004.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:bll6794 hypothetical protein; TRAP dicarboxylate transporter subunit DctP 5419068 6412730 Rpal_5036 Rhodopseudomonas palustris TIE-1 TRAP dicarboxylate transporter subunit DctP YP_001994000.1 5418043 R 395960 CDS YP_001994001.1 192293396 6412731 5419272..5420468 1 NC_011004.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr6795 racemase; L-carnitine dehydratase/bile acid-inducible protein F 5420468 6412731 Rpal_5037 Rhodopseudomonas palustris TIE-1 L-carnitine dehydratase/bile acid-inducible protein F YP_001994001.1 5419272 D 395960 CDS YP_001994002.1 192293397 6412732 5420512..5420964 1 NC_011004.1 PFAM: MaoC domain protein dehydratase; KEGG: bja:blr6796 probable acyl dehydratase; MaoC domain-containing protein dehydratase 5420964 6412732 Rpal_5038 Rhodopseudomonas palustris TIE-1 MaoC domain-containing protein dehydratase YP_001994002.1 5420512 D 395960 CDS YP_001994003.1 192293398 6412733 5420964..5421812 1 NC_011004.1 PFAM: HpcH/HpaI aldolase; KEGG: bja:blr6797 citrate lyase; citryl-CoA lyase 5421812 6412733 Rpal_5039 Rhodopseudomonas palustris TIE-1 citryl-CoA lyase YP_001994003.1 5420964 D 395960 CDS YP_001994004.1 192293399 6412734 5421853..5422584 1 NC_011004.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bja:blr6798 transcriptional regulatory protein; IclR family transcriptional regulator 5422584 6412734 Rpal_5040 Rhodopseudomonas palustris TIE-1 IclR family transcriptional regulator YP_001994004.1 5421853 D 395960 CDS YP_001994005.1 192293400 6412735 complement(5422710..5423753) 1 NC_011004.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 5423753 6412735 Rpal_5041 Rhodopseudomonas palustris TIE-1 guanosine 5'-monophosphate oxidoreductase YP_001994005.1 5422710 R 395960 CDS YP_001994006.1 192293401 6412736 5423841..5424746 1 NC_011004.1 KEGG: reu:Reut_B4967 ketopantoate reductase ApbA/PanE; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 5424746 6412736 Rpal_5042 Rhodopseudomonas palustris TIE-1 2-dehydropantoate 2-reductase YP_001994006.1 5423841 D 395960 CDS YP_001994007.1 192293402 6412737 complement(5424748..5425497) 1 NC_011004.1 PFAM: nuclease (SNase domain protein); KEGG: bbt:BBta_2752 exported protein of unknown function; nuclease 5425497 6412737 Rpal_5043 Rhodopseudomonas palustris TIE-1 nuclease YP_001994007.1 5424748 R 395960 CDS YP_001994008.1 192293403 6412738 5425625..5426539 1 NC_011004.1 PFAM: thioesterase superfamily protein; KEGG: bja:blr7284 hypothetical protein; thioesterase superfamily protein 5426539 6412738 Rpal_5044 Rhodopseudomonas palustris TIE-1 thioesterase superfamily protein YP_001994008.1 5425625 D 395960 CDS YP_001994009.1 192293404 6412739 5426717..5427919 1 NC_011004.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bra:BRADO2426 diguanylate cyclase (GGDEF); diguanylate cyclase 5427919 6412739 Rpal_5045 Rhodopseudomonas palustris TIE-1 diguanylate cyclase YP_001994009.1 5426717 D 395960 CDS YP_001994010.1 192293405 6412740 complement(5427920..5429116) 1 NC_011004.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: pna:Pnap_3569 acetate kinase; acetate kinase 5429116 6412740 Rpal_5046 Rhodopseudomonas palustris TIE-1 acetate kinase YP_001994010.1 5427920 R 395960 CDS YP_001994011.1 192293406 6412741 complement(5429113..5430528) 1 NC_011004.1 PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: cak:Caul_1955 phosphate acetyltransferase; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase 5430528 6412741 Rpal_5047 Rhodopseudomonas palustris TIE-1 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase YP_001994011.1 5429113 R 395960 CDS YP_001994012.1 192293407 6412742 complement(5430552..5431313) 1 NC_011004.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 5431313 6412742 Rpal_5048 Rhodopseudomonas palustris TIE-1 enoyl-(acyl carrier protein) reductase YP_001994012.1 5430552 R 395960 CDS YP_001994013.1 192293408 6412743 complement(5431396..5432265) 1 NC_011004.1 PFAM: protein of unknown function DUF344; KEGG: rfr:Rfer_4046 protein of unknown function DUF344; hypothetical protein 5432265 6412743 Rpal_5049 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994013.1 5431396 R 395960 CDS YP_001994014.1 192293409 6412744 5432647..5434029 1 NC_011004.1 KEGG: bbt:BBta_5233 membrane protein of unknown function; hypothetical protein 5434029 6412744 Rpal_5050 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994014.1 5432647 D 395960 CDS YP_001994015.1 192293410 6412745 complement(5434109..5434513) 1 NC_011004.1 KEGG: nha:Nham_0272 hypothetical protein; hypothetical protein 5434513 6412745 Rpal_5051 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994015.1 5434109 R 395960 CDS YP_001994016.1 192293411 6412746 complement(5434744..5436306) 1 NC_011004.1 KEGG: bja:blr2591 serine protease DO-like protease; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 5436306 6412746 Rpal_5052 Rhodopseudomonas palustris TIE-1 protease Do YP_001994016.1 5434744 R 395960 CDS YP_001994017.1 192293412 6412747 complement(5436567..5437055) 1 NC_011004.1 KEGG: nha:Nham_1775 hypothetical protein; hypothetical protein 5437055 6412747 Rpal_5053 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994017.1 5436567 R 395960 CDS YP_001994018.1 192293413 6412748 complement(5437164..5437448) 1 NC_011004.1 KEGG: nha:Nham_1414 hypothetical protein; hypothetical protein 5437448 6412748 Rpal_5054 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994018.1 5437164 R 395960 CDS YP_001994019.1 192293414 6412749 5437606..5439171 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO1747 ABC transporter (ATP-binding protein); ABC transporter 5439171 6412749 Rpal_5055 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001994019.1 5437606 D 395960 CDS YP_001994020.1 192293415 6412750 5439155..5440246 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bja:blr6156 ABC transporter permease protein; inner-membrane translocator 5440246 6412750 Rpal_5056 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001994020.1 5439155 D 395960 CDS YP_001994021.1 192293416 6412751 5440233..5441150 1 NC_011004.1 PFAM: inner-membrane translocator; KEGG: bja:blr6157 ABC transporter permease protein; inner-membrane translocator 5441150 6412751 Rpal_5057 Rhodopseudomonas palustris TIE-1 inner-membrane translocator YP_001994021.1 5440233 D 395960 CDS YP_001994022.1 192293417 6412752 5441232..5442329 1 NC_011004.1 PFAM: basic membrane lipoprotein; KEGG: bbt:BBta_2057 ABC transporter (substrate-binding protein); ABC transporter substrate-binding protein 5442329 6412752 Rpal_5058 Rhodopseudomonas palustris TIE-1 ABC transporter substrate-binding protein YP_001994022.1 5441232 D 395960 CDS YP_001994023.1 192293418 6412753 complement(5442525..5443490) 1 NC_011004.1 SMART: PDZ/DHR/GLGF domain protein; KEGG: nha:Nham_3491 PDZ/DHR/GLGF; PDZ/DHR/GLGF domain-containing protein 5443490 6412753 Rpal_5059 Rhodopseudomonas palustris TIE-1 PDZ/DHR/GLGF domain-containing protein YP_001994023.1 5442525 R 395960 CDS YP_001994024.1 192293419 6412754 complement(5443610..5444605) 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: bja:blr7786 hypothetical protein; hypothetical protein 5444605 6412754 Rpal_5060 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994024.1 5443610 R 395960 CDS YP_001994025.1 192293420 6412755 5444863..5446119 1 NC_011004.1 KEGG: bja:blr4975 hypothetical protein; hypothetical protein 5446119 6412755 Rpal_5061 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994025.1 5444863 D 395960 CDS YP_001994026.1 192293421 6412756 5446150..5447133 1 NC_011004.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mrd:Mrad2831_0040 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 5447133 6412756 Rpal_5062 Rhodopseudomonas palustris TIE-1 UDP-glucose 4-epimerase YP_001994026.1 5446150 D 395960 CDS YP_001994027.1 192293422 6412757 5447361..5448278 1 NC_011004.1 KEGG: bja:blr7577 UDP-hexose transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase 5448278 6412757 Rpal_5063 Rhodopseudomonas palustris TIE-1 WecB/TagA/CpsF family glycosyl transferase YP_001994027.1 5447361 D 395960 CDS YP_001994028.1 192293423 6412758 complement(5448294..5449430) 1 NC_011004.1 PFAM: glycoside hydrolase family 5; KEGG: rca:Rcas_0182 glycoside hydrolase family 5; glycoside hydrolase family protein 5449430 6412758 Rpal_5064 Rhodopseudomonas palustris TIE-1 glycoside hydrolase family protein YP_001994028.1 5448294 R 395960 CDS YP_001994029.1 192293424 6412759 complement(5449446..5451602) 1 NC_011004.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: bja:blr3362 hypothetical protein; lipopolysaccharide biosynthesis protein 5451602 6412759 Rpal_5065 Rhodopseudomonas palustris TIE-1 lipopolysaccharide biosynthesis protein YP_001994029.1 5449446 R 395960 CDS YP_001994030.1 192293425 6412760 5451978..5453105 1 NC_011004.1 PFAM: glycosyl transferase group 1; KEGG: bja:bll3361 probable glycosyl transferase; group 1 glycosyl transferase 5453105 6412760 Rpal_5066 Rhodopseudomonas palustris TIE-1 group 1 glycosyl transferase YP_001994030.1 5451978 D 395960 CDS YP_001994031.1 192293426 6412761 5453127..5454656 1 NC_011004.1 KEGG: bja:bll3360 hypothetical protein; hypothetical protein 5454656 6412761 Rpal_5067 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994031.1 5453127 D 395960 CDS YP_001994032.1 192293427 6412762 complement(5454674..5455039) 1 NC_011004.1 KEGG: bcs:BCAN_A1201 hypothetical protein; hypothetical protein 5455039 6412762 Rpal_5068 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994032.1 5454674 R 395960 CDS YP_001994033.1 192293428 6412763 5455182..5456651 1 NC_011004.1 KEGG: bja:bll3363 hypothetical protein; hypothetical protein 5456651 6412763 Rpal_5069 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994033.1 5455182 D 395960 CDS YP_001994034.1 192293429 6412764 complement(5456720..5457721) 1 NC_011004.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 5457721 6412764 Rpal_5070 Rhodopseudomonas palustris TIE-1 homoserine O-succinyltransferase YP_001994034.1 5456720 R 395960 CDS YP_001994035.1 192293430 6412765 complement(5457734..5459038) 1 NC_011004.1 KEGG: bja:bll0245 O-acetylhomoserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 5459038 6412765 Rpal_5071 Rhodopseudomonas palustris TIE-1 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_001994035.1 5457734 R 395960 CDS YP_001994036.1 192293431 6412766 5459304..5461121 1 NC_011004.1 activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization; long-chain-acyl-CoA synthetase 5461121 6412766 Rpal_5072 Rhodopseudomonas palustris TIE-1 long-chain-acyl-CoA synthetase YP_001994036.1 5459304 D 395960 CDS YP_001994037.1 192293432 6412767 5461136..5462059 1 NC_011004.1 PFAM: aminotransferase class IV; KEGG: bja:bll0229 aminotransferase; aminotransferase 5462059 6412767 Rpal_5073 Rhodopseudomonas palustris TIE-1 aminotransferase YP_001994037.1 5461136 D 395960 CDS YP_001994038.1 192293433 6412768 complement(5462025..5462909) 1 NC_011004.1 KEGG: bja:bll0956 hypothetical protein; hypothetical protein 5462909 6412768 Rpal_5074 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994038.1 5462025 R 395960 CDS YP_001994039.1 192293434 6412769 5463010..5463255 1 NC_011004.1 KEGG: bra:BRADO6292 conserved hypothetical protein; acyl carrier domain; hypothetical protein 5463255 6412769 Rpal_5075 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994039.1 5463010 D 395960 CDS YP_001994040.1 192293435 6412770 5463242..5464621 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll7783 hypothetical protein; AMP-dependent synthetase and ligase 5464621 6412770 Rpal_5076 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001994040.1 5463242 D 395960 CDS YP_001994041.1 192293436 6412771 5464614..5465345 1 NC_011004.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll7782 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR 5465345 6412771 Rpal_5077 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001994041.1 5464614 D 395960 CDS YP_001994042.1 192293437 6412772 complement(5465579..5466520) 1 NC_011004.1 PFAM: tRNA synthetase class II (G H P and S); KEGG: bja:bll0957 hypothetical protein; hypothetical protein 5466520 6412772 Rpal_5078 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994042.1 5465579 R 395960 CDS YP_001994043.1 192293438 6412773 complement(5466555..5467784) 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bra:BRADO6906 acyl-CoA dehydrogenase; Acyl-CoA dehydrogenase type 2 domain 5467784 6412773 Rpal_5079 Rhodopseudomonas palustris TIE-1 Acyl-CoA dehydrogenase type 2 domain YP_001994043.1 5466555 R 395960 CDS YP_001994044.1 192293439 6412774 5468151..5468423 1 NC_011004.1 KEGG: bja:bsr0959 hypothetical protein; hypothetical protein 5468423 6412774 Rpal_5080 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994044.1 5468151 D 395960 CDS YP_001994045.1 192293440 6412775 5468497..5468952 1 NC_011004.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: bra:BRADO0883 conserved hypothetical protein; RmlC-like cupin family protein; hypothetical protein 5468952 6412775 Rpal_5081 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994045.1 5468497 D 395960 CDS YP_001994046.1 192293441 6412776 5469129..5469716 1 NC_011004.1 KEGG: sit:TM1040_2053 3-dehydroquinate dehydratase; 3-dehydroquinate dehydratase 5469716 6412776 Rpal_5082 Rhodopseudomonas palustris TIE-1 3-dehydroquinate dehydratase YP_001994046.1 5469129 D 395960 CDS YP_001994047.1 192293442 6412777 complement(5470069..5470365) 1 NC_011004.1 KEGG: bra:BRADO5383 ferredoxin protein, FixX; ferredoxin protein, FixX 5470365 6412777 Rpal_5083 Rhodopseudomonas palustris TIE-1 ferredoxin protein, FixX YP_001994047.1 5470069 R 395960 CDS YP_001994048.1 192293443 6412778 complement(5470399..5471706) 1 NC_011004.1 PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: bbt:BBta_5870 FixC protein; electron-transferring-flavoprotein dehydrogenase 5471706 6412778 Rpal_5084 Rhodopseudomonas palustris TIE-1 electron-transferring-flavoprotein dehydrogenase YP_001994048.1 5470399 R 395960 CDS YP_001994049.1 192293444 6412779 complement(5471719..5472825) 1 NC_011004.1 PFAM: electron transfer flavoprotein alpha/beta-subunit ; electron transfer flavoprotein alpha subunit; KEGG: bra:BRADO5385 protein FixB; electron transfer flavoprotein alpha chain; electron transfer flavoprotein alpha/beta-subunit 5472825 6412779 Rpal_5085 Rhodopseudomonas palustris TIE-1 electron transfer flavoprotein alpha/beta-subunit YP_001994049.1 5471719 R 395960 CDS YP_001994050.1 192293445 6412780 complement(5472850..5473695) 1 NC_011004.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: bbt:BBta_5872 protein FixA; electron transfer flavoprotein alpha/beta-subunit 5473695 6412780 Rpal_5086 Rhodopseudomonas palustris TIE-1 electron transfer flavoprotein alpha/beta-subunit YP_001994050.1 5472850 R 395960 CDS YP_001994051.1 192293446 6412781 complement(5474028..5474378) 1 NC_011004.1 associates with NifD and may protect the nitrogenase Fe-Mo protein from oxidative damage; nitrogenase stabilizing/protective protein 5474378 nifW 6412781 nifW Rhodopseudomonas palustris TIE-1 nitrogenase stabilizing/protective protein YP_001994051.1 5474028 R 395960 CDS YP_001994052.1 192293447 6412782 complement(5474407..5475600) 1 NC_011004.1 TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: bra:BRADO5390 homocitrate synthase; homocitrate synthase 5475600 6412782 Rpal_5088 Rhodopseudomonas palustris TIE-1 homocitrate synthase YP_001994052.1 5474407 R 395960 CDS YP_001994053.1 192293448 6412783 complement(5475593..5476825) 1 NC_011004.1 TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gdi:GDI0448 cysteine desulfurase (nitrogenase metalloclusters biosynthesis protein NifS); cysteine desulfurase NifS 5476825 6412783 Rpal_5089 Rhodopseudomonas palustris TIE-1 cysteine desulfurase NifS YP_001994053.1 5475593 R 395960 CDS YP_001994054.1 192293449 6412784 complement(5476822..5477808) 1 NC_011004.1 TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: gdi:GDI0447 nitrogen fixation protein NifU; Fe-S cluster assembly protein NifU 5477808 6412784 Rpal_5090 Rhodopseudomonas palustris TIE-1 Fe-S cluster assembly protein NifU YP_001994054.1 5476822 R 395960 CDS YP_001994055.1 192293450 6412785 complement(5477836..5478156) 1 NC_011004.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: mlo:mll5942 hypothetical protein; iron-sulfur cluster assembly accessory protein 5478156 6412785 Rpal_5091 Rhodopseudomonas palustris TIE-1 iron-sulfur cluster assembly accessory protein YP_001994055.1 5477836 R 395960 CDS YP_001994056.1 192293451 6412786 complement(5478438..5479148) 1 NC_011004.1 PFAM: NifQ family protein; KEGG: bra:BRADO5393 nitrogen fixation protein NifQ; NifQ family protein 5479148 6412786 Rpal_5092 Rhodopseudomonas palustris TIE-1 NifQ family protein YP_001994056.1 5478438 R 395960 CDS YP_001994057.1 192293452 6412787 complement(5479166..5479477) 1 NC_011004.1 TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azc:AZC_1034 ferredoxin; ferredoxin III 5479477 6412787 Rpal_5093 Rhodopseudomonas palustris TIE-1 ferredoxin III YP_001994057.1 5479166 R 395960 CDS YP_001994058.1 192293453 6412788 complement(5479538..5479744) 1 NC_011004.1 PFAM: protein of unknown function DUF683; KEGG: azc:AZC_3451 hypothetical 7.7 kDa protein in FixX 3'region; hypothetical protein 5479744 6412788 Rpal_5094 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994058.1 5479538 R 395960 CDS YP_001994059.1 192293454 6412789 complement(5479763..5480227) 1 NC_011004.1 TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269; KEGG: mca:MCA0236 hypothetical protein; nitrogen fixation protein 5480227 6412789 Rpal_5095 Rhodopseudomonas palustris TIE-1 nitrogen fixation protein YP_001994059.1 5479763 R 395960 CDS YP_001994060.1 192293455 6412790 complement(5480229..5480627) 1 NC_011004.1 TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: azc:AZC_1036 nitrogenase molybdenum-iron NifX protein; nitrogen fixation protein NifX 5480627 6412790 Rpal_5096 Rhodopseudomonas palustris TIE-1 nitrogen fixation protein NifX YP_001994060.1 5480229 R 395960 CDS YP_001994061.1 192293456 6412791 complement(5480683..5482056) 1 NC_011004.1 functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifN 5482056 6412791 Rpal_5097 Rhodopseudomonas palustris TIE-1 nitrogenase molybdenum-cofactor biosynthesis protein NifN YP_001994061.1 5480683 R 395960 CDS YP_001994062.1 192293457 6412792 complement(5482067..5483530) 1 NC_011004.1 functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifE 5483530 6412792 Rpal_5098 Rhodopseudomonas palustris TIE-1 nitrogenase molybdenum-cofactor biosynthesis protein NifE YP_001994062.1 5482067 R 395960 CDS YP_001994063.1 192293458 6412793 complement(5483570..5485129) 1 NC_011004.1 KEGG: azc:AZC_1039 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit beta 5485129 6412793 Rpal_5099 Rhodopseudomonas palustris TIE-1 nitrogenase molybdenum-iron protein subunit beta YP_001994063.1 5483570 R 395960 CDS YP_001994064.1 192293459 6412794 complement(5485218..5486681) 1 NC_011004.1 KEGG: mca:MCA0230 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit alpha 5486681 6412794 Rpal_5100 Rhodopseudomonas palustris TIE-1 nitrogenase molybdenum-iron protein subunit alpha YP_001994064.1 5485218 R 395960 CDS YP_001994065.1 192293460 6412795 complement(5486753..5487649) 1 NC_011004.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; nitrogenase reductase 5487649 nifH 6412795 nifH Rhodopseudomonas palustris TIE-1 nitrogenase reductase YP_001994065.1 5486753 R 395960 CDS YP_001994066.1 192293461 6412796 complement(5488226..5489128) 1 NC_011004.1 KEGG: mca:MCA0218 hypothetical protein; hypothetical protein 5489128 6412796 Rpal_5102 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994066.1 5488226 R 395960 CDS YP_001994067.1 192293462 6412797 complement(5489144..5489422) 1 NC_011004.1 KEGG: azc:AZC_3422 hypothetical protein; hypothetical protein 5489422 6412797 Rpal_5103 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994067.1 5489144 R 395960 CDS YP_001994068.1 192293463 6412798 complement(5489425..5489625) 1 NC_011004.1 TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: bxe:Bxe_B1454 nitrogen fixation protein; nitrogen fixation protein FixT 5489625 6412798 Rpal_5104 Rhodopseudomonas palustris TIE-1 nitrogen fixation protein FixT YP_001994068.1 5489425 R 395960 CDS YP_001994069.1 192293464 6412799 complement(5489663..5489896) 1 NC_011004.1 PFAM: NifZ family protein; KEGG: xau:Xaut_0117 NifZ family protein; NifZ family protein 5489896 6412799 Rpal_5105 Rhodopseudomonas palustris TIE-1 NifZ family protein YP_001994069.1 5489663 R 395960 CDS YP_001994070.1 192293465 6412800 complement(5489896..5490195) 1 NC_011004.1 PFAM: NifZ family protein; KEGG: azc:AZC_3419 iron-sulfur cofactor synthesis protein; NifZ family protein 5490195 6412800 Rpal_5106 Rhodopseudomonas palustris TIE-1 NifZ family protein YP_001994070.1 5489896 R 395960 CDS YP_001994071.1 192293466 6412801 complement(5490192..5490977) 1 NC_011004.1 PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: azc:AZC_3418 hypothetical protein; LRV FeS4 cluster domain-containing protein 5490977 6412801 Rpal_5107 Rhodopseudomonas palustris TIE-1 LRV FeS4 cluster domain-containing protein YP_001994071.1 5490192 R 395960 CDS YP_001994072.1 192293467 6412802 complement(5490967..5491506) 1 NC_011004.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: xau:Xaut_0114 hypothetical protein; hypothetical protein 5491506 6412802 Rpal_5108 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994072.1 5490967 R 395960 CDS YP_001994073.1 192293468 6412803 complement(5491510..5491866) 1 NC_011004.1 PFAM: HesB/YadR/YfhF-family protein; KEGG: mca:MCA0206 HesB/YadR/YfhF family protein; HesB/YadR/YfhF-family protein 5491866 6412803 Rpal_5109 Rhodopseudomonas palustris TIE-1 HesB/YadR/YfhF-family protein YP_001994073.1 5491510 R 395960 CDS YP_001994074.1 192293469 6412804 complement(5491877..5492098) 1 NC_011004.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bbt:BBta_5903 ferredoxin-like (in nif region); 4Fe-4S ferredoxin 5492098 6412804 Rpal_5110 Rhodopseudomonas palustris TIE-1 4Fe-4S ferredoxin YP_001994074.1 5491877 R 395960 CDS YP_001994075.1 192293470 6412805 complement(5492122..5493678) 1 NC_011004.1 TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; radical SAM domain protein; KEGG: mca:MCA0204 nitrogenase cofactor biosynthesis protein NifB; nitrogenase cofactor biosynthesis protein NifB 5493678 6412805 Rpal_5111 Rhodopseudomonas palustris TIE-1 nitrogenase cofactor biosynthesis protein NifB YP_001994075.1 5492122 R 395960 CDS YP_001994076.1 192293471 6412806 complement(5493837..5494031) 1 NC_011004.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gdi:GDI0431 ferredoxin-like; 4Fe-4S ferredoxin 5494031 6412806 Rpal_5112 Rhodopseudomonas palustris TIE-1 4Fe-4S ferredoxin YP_001994076.1 5493837 R 395960 CDS YP_001994077.1 192293472 6412807 complement(5494304..5496058) 1 NC_011004.1 KEGG: bbt:BBta_5933 Mo/Fe nitrogenase specific transcriptional regulator, NifA; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase AAA; SMART: ATPase AAA; Fis family transcriptional regulator 5496058 6412807 Rpal_5113 Rhodopseudomonas palustris TIE-1 Fis family transcriptional regulator YP_001994077.1 5494304 R 395960 CDS YP_001994078.1 192293473 6412808 complement(5496371..5497192) 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_5935 FixR protein; short-chain dehydrogenase/reductase SDR 5497192 6412808 Rpal_5114 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001994078.1 5496371 R 395960 CDS YP_001994079.1 192293474 6412809 5497524..5498378 1 NC_011004.1 KEGG: bbt:BBta_5936 hypothetical protein; hypothetical protein 5498378 6412809 Rpal_5115 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994079.1 5497524 D 395960 CDS YP_001994080.1 192293475 6412810 complement(5498526..5500406) 1 NC_011004.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: bja:blr6523 iron transport protein; ferrous iron transport protein B 5500406 6412810 Rpal_5116 Rhodopseudomonas palustris TIE-1 ferrous iron transport protein B YP_001994080.1 5498526 R 395960 CDS YP_001994081.1 192293476 6412811 complement(5500444..5500734) 1 NC_011004.1 PFAM: FeoA family protein; KEGG: bra:BRADO5587 FeoA family protein; FeoA family protein 5500734 6412811 Rpal_5117 Rhodopseudomonas palustris TIE-1 FeoA family protein YP_001994081.1 5500444 R 395960 CDS YP_001994082.1 192293477 6412812 5501096..5501257 1 NC_011004.1 hypothetical protein 5501257 6412812 Rpal_5118 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994082.1 5501096 D 395960 CDS YP_001994083.1 192293478 6412813 complement(5501428..5503119) 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_2902 sensory transducer protein; methyl-accepting chemotaxis sensory transducer 5503119 6412813 Rpal_5119 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001994083.1 5501428 R 395960 CDS YP_001994084.1 192293479 6412814 complement(5503504..5505195) 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:blr2931 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 5505195 6412814 Rpal_5120 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001994084.1 5503504 R 395960 CDS YP_001994085.1 192293480 6412815 complement(5505401..5505787) 1 NC_011004.1 hypothetical protein 5505787 6412815 Rpal_5121 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994085.1 5505401 R 395960 CDS YP_001994086.1 192293481 6412816 complement(5506084..5507469) 1 NC_011004.1 catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation; ribulose bisphosphate carboxylase 5507469 6412816 Rpal_5122 Rhodopseudomonas palustris TIE-1 ribulose bisphosphate carboxylase YP_001994086.1 5506084 R 395960 CDS YP_001994087.1 192293482 6412817 complement(5507528..5508613) 1 NC_011004.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 5508613 6412817 Rpal_5123 Rhodopseudomonas palustris TIE-1 fructose-1,6-bisphosphate aldolase YP_001994087.1 5507528 R 395960 CDS YP_001994088.1 192293483 6412818 complement(5508675..5510690) 1 NC_011004.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 5510690 6412818 Rpal_5124 Rhodopseudomonas palustris TIE-1 transketolase YP_001994088.1 5508675 R 395960 CDS YP_001994089.1 192293484 6412819 complement(5510725..5511600) 1 NC_011004.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: bbt:BBta_6400 phosphoribulokinase; phosphoribulokinase 5511600 6412819 Rpal_5125 Rhodopseudomonas palustris TIE-1 phosphoribulokinase YP_001994089.1 5510725 R 395960 CDS YP_001994090.1 192293485 6412820 complement(5511638..5512669) 1 NC_011004.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 5512669 6412820 Rpal_5126 Rhodopseudomonas palustris TIE-1 fructose-1,6-bisphosphatase YP_001994090.1 5511638 R 395960 CDS YP_001994091.1 192293486 6412821 5513141..5513890 1 NC_011004.1 PFAM: alpha/beta hydrolase fold; KEGG: sth:STH2045 esterase; alpha/beta hydrolase fold protein 5513890 6412821 Rpal_5127 Rhodopseudomonas palustris TIE-1 alpha/beta hydrolase fold protein YP_001994091.1 5513141 D 395960 CDS YP_001994092.1 192293487 6412822 complement(5514019..5514774) 1 NC_011004.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pde:Pden_4604 regulatory proteins, IclR; IclR family transcriptional regulator 5514774 6412822 Rpal_5128 Rhodopseudomonas palustris TIE-1 IclR family transcriptional regulator YP_001994092.1 5514019 R 395960 CDS YP_001994093.1 192293488 6412823 complement(5514855..5515943) 1 NC_011004.1 PFAM: extracellular solute-binding protein family 1; KEGG: pde:Pden_4603 ABC transporter binding protein component; family 1 extracellular solute-binding protein 5515943 6412823 Rpal_5129 Rhodopseudomonas palustris TIE-1 family 1 extracellular solute-binding protein YP_001994093.1 5514855 R 395960 CDS YP_001994094.1 192293489 6412824 complement(5515977..5517767) 1 NC_011004.1 PFAM: ABC transporter inner membrane protein; KEGG: pde:Pden_4602 ABC transporter inner membrane protein; ABC transporter inner membrane protein 5517767 6412824 Rpal_5130 Rhodopseudomonas palustris TIE-1 ABC transporter inner membrane protein YP_001994094.1 5515977 R 395960 CDS YP_001994095.1 192293490 6412825 complement(5517764..5518909) 1 NC_011004.1 KEGG: pde:Pden_4601 ABC transporter; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; Transport-associated OB domain protein; SMART: ATPase AAA; spermidine/putrescine ABC transporter ATPase 5518909 6412825 Rpal_5131 Rhodopseudomonas palustris TIE-1 spermidine/putrescine ABC transporter ATPase YP_001994095.1 5517764 R 395960 CDS YP_001994096.1 192293491 6412826 5519165..5519971 1 NC_011004.1 PFAM: coenzyme A transferase; KEGG: pde:Pden_4600 glutaconate CoA-transferase, subunit A; coenzyme A transferase 5519971 6412826 Rpal_5132 Rhodopseudomonas palustris TIE-1 coenzyme A transferase YP_001994096.1 5519165 D 395960 CDS YP_001994097.1 192293492 6412827 5519971..5520738 1 NC_011004.1 PFAM: coenzyme A transferase; KEGG: pde:Pden_4599 CoA transferase, subunit B; coenzyme A transferase 5520738 6412827 Rpal_5133 Rhodopseudomonas palustris TIE-1 coenzyme A transferase YP_001994097.1 5519971 D 395960 CDS YP_001994098.1 192293493 6412829 5523095..5523664 1 NC_011004.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: carboxymuconolactone decarboxylase; KEGG: bra:BRADO4672 conserved hypothetical protein; peroxidase related protein; peroxidase-like protein 5523664 6412829 Rpal_5135 Rhodopseudomonas palustris TIE-1 peroxidase-like protein YP_001994098.1 5523095 D 395960 CDS YP_001994099.1 192293494 6412830 5523746..5524432 1 NC_011004.1 PFAM: class II aldolase/adducin family protein; KEGG: bja:bll6170 L-fuculose phosphate aldolase; L-fuculose phosphate aldolase 5524432 6412830 Rpal_5136 Rhodopseudomonas palustris TIE-1 L-fuculose phosphate aldolase YP_001994099.1 5523746 D 395960 CDS YP_001994100.1 192293495 6412831 5524463..5525422 1 NC_011004.1 PFAM: PfkB domain protein; KEGG: rsp:RSP_2370 sugar kinase; PfkB domain-containing protein 5525422 6412831 Rpal_5137 Rhodopseudomonas palustris TIE-1 PfkB domain-containing protein YP_001994100.1 5524463 D 395960 CDS YP_001994101.1 192293496 6412832 5525469..5526215 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: smd:Smed_3033 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 5526215 6412832 Rpal_5138 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001994101.1 5525469 D 395960 CDS YP_001994102.1 192293497 6412833 5526248..5527234 1 NC_011004.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: nha:Nham_3502 alcohol dehydrogenase GroES-like; YhdH/YhfP family quinone oxidoreductase 5527234 6412833 Rpal_5139 Rhodopseudomonas palustris TIE-1 YhdH/YhfP family quinone oxidoreductase YP_001994102.1 5526248 D 395960 CDS YP_001994103.1 192293498 6412834 5527311..5527814 1 NC_011004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: scl:sce5163 acetyltransferase; N-acetyltransferase GCN5 5527814 6412834 Rpal_5140 Rhodopseudomonas palustris TIE-1 N-acetyltransferase GCN5 YP_001994103.1 5527311 D 395960 CDS YP_001994104.1 192293499 6412841 complement(5534515..5535999) 1 NC_011004.1 KEGG: nha:Nham_3615 alpha,alpha-trehalose-phosphate synthase; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20; alpha,alpha-trehalose-phosphate synthase 5535999 6412841 Rpal_5141 Rhodopseudomonas palustris TIE-1 alpha,alpha-trehalose-phosphate synthase YP_001994104.1 5534515 R 395960 CDS YP_001994105.1 192293500 6412842 complement(5536156..5536953) 1 NC_011004.1 KEGG: bja:bll0323 probable trehalose-phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; HAD family hydrolase 5536953 6412842 Rpal_5142 Rhodopseudomonas palustris TIE-1 HAD family hydrolase YP_001994105.1 5536156 R 395960 CDS YP_001994106.1 192293501 6412843 complement(5536950..5538437) 1 NC_011004.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:bll0324 sugar transport protein; major facilitator superfamily protein 5538437 6412843 Rpal_5143 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001994106.1 5536950 R 395960 CDS YP_001994107.1 192293502 6412844 complement(5538619..5540679) 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:bll0327 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 5540679 6412844 Rpal_5144 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001994107.1 5538619 R 395960 CDS YP_001994108.1 192293503 6412845 complement(5540780..5541526) 1 NC_011004.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; cupin; KEGG: rru:Rru_A1462 transcriptional regulator, AraC family; AraC family transcriptional regulator 5541526 6412845 Rpal_5145 Rhodopseudomonas palustris TIE-1 AraC family transcriptional regulator YP_001994108.1 5540780 R 395960 CDS YP_001994109.1 192293504 6412846 5541865..5543526 1 NC_011004.1 KEGG: rru:Rru_A1461 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase 5543526 6412846 Rpal_5146 Rhodopseudomonas palustris TIE-1 2-isopropylmalate synthase YP_001994109.1 5541865 D 395960 CDS YP_001994110.1 192293505 6412847 5543831..5544316 1 NC_011004.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bra:BRADO6957 carbon-monoxide dehydrogenase small subunit, CoxS-like protein; (2Fe-2S)-binding domain-containing protein 5544316 6412847 Rpal_5147 Rhodopseudomonas palustris TIE-1 (2Fe-2S)-binding domain-containing protein YP_001994110.1 5543831 D 395960 CDS YP_001994111.1 192293506 6412848 5544427..5546781 1 NC_011004.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bbt:BBta_0573 carbon-monoxide dehydrogenase large subunit, CoxL-like protein; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 5546781 6412848 Rpal_5148 Rhodopseudomonas palustris TIE-1 molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001994111.1 5544427 D 395960 CDS YP_001994112.1 192293507 6412849 5546890..5547690 1 NC_011004.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: bra:BRADO6959 carbon monoxide dehydrogenase medium subunit, CoxM-like protein; carbon monoxide dehydrogenase 5547690 6412849 Rpal_5149 Rhodopseudomonas palustris TIE-1 carbon monoxide dehydrogenase YP_001994112.1 5546890 D 395960 CDS YP_001994113.1 192293508 6412850 5547875..5548990 1 NC_011004.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr0338 alpha-methylacyl-CoA racemase; L-carnitine dehydratase/bile acid-inducible protein F 5548990 6412850 Rpal_5150 Rhodopseudomonas palustris TIE-1 L-carnitine dehydratase/bile acid-inducible protein F YP_001994113.1 5547875 D 395960 CDS YP_001994114.1 192293509 6412851 complement(5549115..5550383) 1 NC_011004.1 KEGG: bbt:BBta_0567 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; fumarylacetoacetase 5550383 6412851 Rpal_5151 Rhodopseudomonas palustris TIE-1 fumarylacetoacetase YP_001994114.1 5549115 R 395960 CDS YP_001994115.1 192293510 6412852 complement(5550676..5551332) 1 NC_011004.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase domain; KEGG: nha:Nham_0920 maleylacetoacetate isomerase; maleylacetoacetate isomerase 5551332 6412852 Rpal_5152 Rhodopseudomonas palustris TIE-1 maleylacetoacetate isomerase YP_001994115.1 5550676 R 395960 CDS YP_001994116.1 192293511 6412853 complement(5551329..5552675) 1 NC_011004.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase 5552675 6412853 Rpal_5153 Rhodopseudomonas palustris TIE-1 homogentisate 1,2-dioxygenase YP_001994116.1 5551329 R 395960 CDS YP_001994117.1 192293512 6412854 complement(5552732..5553685) 1 NC_011004.1 PFAM: beta-lactamase domain protein; KEGG: bra:BRADO6967 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 5553685 6412854 Rpal_5154 Rhodopseudomonas palustris TIE-1 beta-lactamase domain-containing protein YP_001994117.1 5552732 R 395960 CDS YP_001994118.1 192293513 6412855 complement(5553912..5554130) 1 NC_011004.1 KEGG: nha:Nham_0923 hypothetical protein; hypothetical protein 5554130 6412855 Rpal_5155 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994118.1 5553912 R 395960 CDS YP_001994119.1 192293514 6412856 complement(5554420..5556027) 1 NC_011004.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: nha:Nham_0924 hypothetical protein; FAD-dependent oxidoreductase 5556027 6412856 Rpal_5156 Rhodopseudomonas palustris TIE-1 FAD-dependent oxidoreductase YP_001994119.1 5554420 R 395960 CDS YP_001994120.1 192293515 6412857 5556154..5556651 1 NC_011004.1 PFAM: regulatory protein MarR; KEGG: bra:BRADO6970 transcriptional regulator, MarR family; MarR family transcriptional regulator 5556651 6412857 Rpal_5157 Rhodopseudomonas palustris TIE-1 MarR family transcriptional regulator YP_001994120.1 5556154 D 395960 CDS YP_001994121.1 192293516 6412858 5556822..5558246 1 NC_011004.1 PFAM: TPR repeat-containing protein; peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nwi:Nwi_3029 peptidase C14; peptidase C14 caspase catalytic subunit p20 5558246 6412858 Rpal_5158 Rhodopseudomonas palustris TIE-1 peptidase C14 caspase catalytic subunit p20 YP_001994121.1 5556822 D 395960 CDS YP_001994122.1 192293517 6412859 5558351..5559001 1 NC_011004.1 PFAM: OmpA/MotB domain protein; KEGG: bbt:BBta_0555 hypothetical protein; OmpA/MotB domain-containing protein 5559001 6412859 Rpal_5159 Rhodopseudomonas palustris TIE-1 OmpA/MotB domain-containing protein YP_001994122.1 5558351 D 395960 CDS YP_001994123.1 192293518 6412860 5559160..5560047 1 NC_011004.1 KEGG: nha:Nham_3611 secretion protein HlyD; secretion protein HlyD 5560047 6412860 Rpal_5160 Rhodopseudomonas palustris TIE-1 secretion protein HlyD YP_001994123.1 5559160 D 395960 CDS YP_001994124.1 192293519 6412861 5560047..5563199 1 NC_011004.1 PFAM: acriflavin resistance protein; KEGG: nha:Nham_3610 acriflavin resistance protein; acriflavin resistance protein 5563199 6412861 Rpal_5161 Rhodopseudomonas palustris TIE-1 acriflavin resistance protein YP_001994124.1 5560047 D 395960 CDS YP_001994125.1 192293520 6412862 5563241..5565049 1 NC_011004.1 PFAM: AsmA family protein; KEGG: bja:blr0358 hypothetical protein; AsmA family protein 5565049 6412862 Rpal_5162 Rhodopseudomonas palustris TIE-1 AsmA family protein YP_001994125.1 5563241 D 395960 CDS YP_001994126.1 192293521 6412863 5565131..5566027 1 NC_011004.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: bbt:BBta_0549 exported protein of unknown function; RND family efflux transporter MFP subunit 5566027 6412863 Rpal_5163 Rhodopseudomonas palustris TIE-1 RND family efflux transporter MFP subunit YP_001994126.1 5565131 D 395960 CDS YP_001994127.1 192293522 6412864 complement(5566089..5566343) 1 NC_011004.1 KEGG: ppu:PP_1576 immunity protein; hypothetical protein 5566343 6412864 Rpal_5164 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994127.1 5566089 R 395960 CDS YP_001994128.1 192293523 6412865 5566901..5568580 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mag:amb3991 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 5568580 6412865 Rpal_5165 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001994128.1 5566901 D 395960 CDS YP_001994129.1 192293524 6412866 complement(5568622..5570259) 1 NC_011004.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 5570259 lysK 6412866 lysK Rhodopseudomonas palustris TIE-1 lysyl-tRNA synthetase YP_001994129.1 5568622 R 395960 CDS YP_001994130.1 192293525 6412867 complement(5570293..5571249) 1 NC_011004.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: nha:Nham_0202 extracellular solute-binding protein, family 3; family 3 extracellular solute-binding protein 5571249 6412867 Rpal_5167 Rhodopseudomonas palustris TIE-1 family 3 extracellular solute-binding protein YP_001994130.1 5570293 R 395960 CDS YP_001994131.1 192293526 6412868 5571290..5573341 1 NC_011004.1 PFAM: glycosyl transferase family 2; KEGG: azc:AZC_0377 glycosyltransferase; family 2 glycosyl transferase 5573341 6412868 Rpal_5168 Rhodopseudomonas palustris TIE-1 family 2 glycosyl transferase YP_001994131.1 5571290 D 395960 CDS YP_001994132.1 192293527 6412869 complement(5573343..5573942) 1 NC_011004.1 PFAM: electron transport protein SCO1/SenC; KEGG: bbt:BBta_0787 electron transport protein; electron transport protein SCO1/SenC 5573942 6412869 Rpal_5169 Rhodopseudomonas palustris TIE-1 electron transport protein SCO1/SenC YP_001994132.1 5573343 R 395960 CDS YP_001994133.1 192293528 6412870 complement(5574118..5574576) 1 NC_011004.1 KEGG: bja:blr1130 hypothetical protein; hypothetical protein 5574576 6412870 Rpal_5170 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994133.1 5574118 R 395960 CDS YP_001994134.1 192293529 6412871 5574789..5575127 1 NC_011004.1 hypothetical protein 5575127 6412871 Rpal_5171 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994134.1 5574789 D 395960 CDS YP_001994135.1 192293530 6412872 5575300..5577270 1 NC_011004.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_1388 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 5577270 6412872 Rpal_5172 Rhodopseudomonas palustris TIE-1 methyl-accepting chemotaxis sensory transducer YP_001994135.1 5575300 D 395960 CDS YP_001994136.1 192293531 6412873 5577419..5577796 1 NC_011004.1 KEGG: bja:bll4535 hypothetical protein; hypothetical protein 5577796 6412873 Rpal_5173 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994136.1 5577419 D 395960 CDS YP_001994137.1 192293532 6412874 complement(5577987..5579150) 1 NC_011004.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bpa:BPP0371 NADH:flavin oxidoreductase / NADH oxidase family protein; NADH:flavin oxidoreductase 5579150 6412874 Rpal_5174 Rhodopseudomonas palustris TIE-1 NADH:flavin oxidoreductase YP_001994137.1 5577987 R 395960 CDS YP_001994138.1 192293533 6412875 5579317..5580315 1 NC_011004.1 PFAM: conserved hypothetical protein; KEGG: azc:AZC_3350 hypothetical protein; hypothetical protein 5580315 6412875 Rpal_5175 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994138.1 5579317 D 395960 CDS YP_001994139.1 192293534 6412876 5580337..5581239 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bra:BRADO2335 transcriptional regulator of protochatechuate degradation (LysR family); LysR family transcriptional regulator 5581239 6412876 Rpal_5176 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001994139.1 5580337 D 395960 CDS YP_001994140.1 192293535 6412877 5581366..5582484 1 NC_011004.1 PFAM: protein of unknown function DUF453; KEGG: azo:azo2544 hypothetical protein; hypothetical protein 5582484 6412877 Rpal_5177 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994140.1 5581366 D 395960 CDS YP_001994141.1 192293536 6412878 5582692..5583720 1 NC_011004.1 PFAM: amidohydrolase 2; KEGG: bra:BRADO2337 4-oxalomesaconate hydratase; amidohydrolase 2 5583720 6412878 Rpal_5178 Rhodopseudomonas palustris TIE-1 amidohydrolase 2 YP_001994141.1 5582692 D 395960 CDS YP_001994142.1 192293537 6412879 5583723..5584418 1 NC_011004.1 TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: mag:amb0252 hypothetical protein; hypothetical protein 5584418 6412879 Rpal_5179 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994142.1 5583723 D 395960 CDS YP_001994143.1 192293538 6412880 5584418..5585347 1 NC_011004.1 PFAM: phosphogluconate dehydrogenase, NAD-binding, -like; KEGG: bra:BRADO2339 dehydrogenase, with NAD binding domain; phosphogluconate dehydrogenase-like protein 5585347 6412880 Rpal_5180 Rhodopseudomonas palustris TIE-1 phosphogluconate dehydrogenase-like protein YP_001994143.1 5584418 D 395960 CDS YP_001994144.1 192293539 6412881 5585596..5586510 1 NC_011004.1 PFAM: amidohydrolase 2; KEGG: bbt:BBta_2700 2-pyrone-4,6-dicarboxylic acid hydrolase; amidohydrolase 2 5586510 6412881 Rpal_5181 Rhodopseudomonas palustris TIE-1 amidohydrolase 2 YP_001994144.1 5585596 D 395960 CDS YP_001994145.1 192293540 6412882 5586616..5587005 1 NC_011004.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha 5587005 6412882 Rpal_5182 Rhodopseudomonas palustris TIE-1 protocatechuate 4,5-dioxygenase subunit alpha YP_001994145.1 5586616 D 395960 CDS YP_001994146.1 192293541 6412883 5587005..5587859 1 NC_011004.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta 5587859 6412883 Rpal_5183 Rhodopseudomonas palustris TIE-1 protocatechuate 4,5-dioxygenase subunit beta YP_001994146.1 5587005 D 395960 CDS YP_001994147.1 192293542 6412884 5587861..5588820 1 NC_011004.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bra:BRADO2343 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; oxidoreductase domain-containing protein 5588820 6412884 Rpal_5184 Rhodopseudomonas palustris TIE-1 oxidoreductase domain-containing protein YP_001994147.1 5587861 D 395960 CDS YP_001994148.1 192293543 6412885 5589013..5589411 1 NC_011004.1 KEGG: nha:Nham_3738 hypothetical protein; hypothetical protein 5589411 6412885 Rpal_5185 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994148.1 5589013 D 395960 CDS YP_001994149.1 192293544 6412886 5589517..5589912 1 NC_011004.1 TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: bja:blr1323 phosphoribosyl-ATP pyrophosphohydrolase; phosphoribosyl-ATP diphosphatase 5589912 6412886 Rpal_5186 Rhodopseudomonas palustris TIE-1 phosphoribosyl-ATP diphosphatase YP_001994149.1 5589517 D 395960 CDS YP_001994150.1 192293545 6412887 5590014..5590595 1 NC_011004.1 KEGG: nha:Nham_3739 DedA; DedA integral membrane protein 5590595 6412887 Rpal_5187 Rhodopseudomonas palustris TIE-1 DedA integral membrane protein YP_001994150.1 5590014 D 395960 CDS YP_001994151.1 192293546 6412888 5590648..5591319 1 NC_011004.1 KEGG: bbt:BBta_0959 exported protein of unknown function; hypothetical protein 5591319 6412888 Rpal_5188 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994151.1 5590648 D 395960 CDS YP_001994152.1 192293547 6412889 5591465..5592433 1 NC_011004.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: bbt:BBta_0960 dioxygenase; 2-nitropropane dioxygenase 5592433 6412889 Rpal_5189 Rhodopseudomonas palustris TIE-1 2-nitropropane dioxygenase YP_001994152.1 5591465 D 395960 CDS YP_001994153.1 192293548 6412890 5592590..5593363 1 NC_011004.1 KEGG: bja:blr1328 hypothetical protein; hypothetical protein 5593363 6412890 Rpal_5190 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994153.1 5592590 D 395960 CDS YP_001994154.1 192293549 6412891 5593553..5593807 1 NC_011004.1 KEGG: bbt:BBta_0975 hypothetical protein; hypothetical protein 5593807 6412891 Rpal_5191 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994154.1 5593553 D 395960 CDS YP_001994155.1 192293550 6412892 5593933..5594661 1 NC_011004.1 KEGG: bbt:BBta_0976 exported protein of unknown function; hypothetical protein 5594661 6412892 Rpal_5192 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994155.1 5593933 D 395960 CDS YP_001994156.1 192293551 6412893 complement(5594715..5596463) 1 NC_011004.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nar:Saro_3797 transcriptional regulator, SARP family; hypothetical protein 5596463 6412893 Rpal_5193 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994156.1 5594715 R 395960 CDS YP_001994157.1 192293552 6412894 5596708..5597679 1 NC_011004.1 KEGG: mar:MAE_00590 peptidase PatA homolog; peptidase PatA-like protein 5597679 6412894 Rpal_5194 Rhodopseudomonas palustris TIE-1 peptidase PatA-like protein YP_001994157.1 5596708 D 395960 CDS YP_001994158.1 192293553 6412895 complement(5597652..5598242) 1 NC_011004.1 KEGG: bbt:BBta_2076 hypothetical protein; hypothetical protein 5598242 6412895 Rpal_5195 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994158.1 5597652 R 395960 CDS YP_001994159.1 192293554 6412896 complement(5598390..5599511) 1 NC_011004.1 KEGG: bja:blr6953 molybdenum ABC transporter ATP-binding protein; TIGRFAM: molybdate ABC transporter ATPase subunit; PFAM: ABC transporter; TOBE domain protein; SMART: ATPase AAA; molybdate ABC transporter ATPase 5599511 6412896 Rpal_5196 Rhodopseudomonas palustris TIE-1 molybdate ABC transporter ATPase YP_001994159.1 5598390 R 395960 CDS YP_001994160.1 192293555 6412897 complement(5599508..5600194) 1 NC_011004.1 TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_2079 molybdenum ABC transporter (permease protein); molybdate ABC transporter inner membrane subunit 5600194 6412897 Rpal_5197 Rhodopseudomonas palustris TIE-1 molybdate ABC transporter inner membrane subunit YP_001994160.1 5599508 R 395960 CDS YP_001994161.1 192293556 6412898 complement(5600440..5601213) 1 NC_011004.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bja:blr6951 molybdenum ABC transporter molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 5601213 6412898 Rpal_5198 Rhodopseudomonas palustris TIE-1 molybdenum ABC transporter periplasmic molybdate-binding protein YP_001994161.1 5600440 R 395960 CDS YP_001994162.1 192293557 6412899 complement(5601358..5602149) 1 NC_011004.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: nha:Nham_2953 transcriptional regulator, ModE family; ModE family transcriptional regulator 5602149 6412899 Rpal_5199 Rhodopseudomonas palustris TIE-1 ModE family transcriptional regulator YP_001994162.1 5601358 R 395960 CDS YP_001994163.1 192293558 6412900 5602248..5602457 1 NC_011004.1 PFAM: TOBE domain protein; KEGG: mlo:msr1466 molybdo-pterin binding protein; TOBE domain-containing protein 5602457 6412900 Rpal_5200 Rhodopseudomonas palustris TIE-1 TOBE domain-containing protein YP_001994163.1 5602248 D 395960 CDS YP_001994164.1 192293559 6412901 complement(5602502..5603071) 1 NC_011004.1 KEGG: nha:Nham_3410 hypothetical protein; hypothetical protein 5603071 6412901 Rpal_5201 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994164.1 5602502 R 395960 CDS YP_001994165.1 192293560 6412902 5603554..5608542 1 NC_011004.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rfr:Rfer_3209 pyruvate flavodoxin/ferredoxin oxidoreductase-like; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 5608542 6412902 Rpal_5202 Rhodopseudomonas palustris TIE-1 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_001994165.1 5603554 D 395960 CDS YP_001994166.1 192293561 6412903 5608539..5611373 1 NC_011004.1 undetermined function; bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase 5611373 6412903 Rpal_5203 Rhodopseudomonas palustris TIE-1 bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase YP_001994166.1 5608539 D 395960 CDS YP_001994167.1 192293562 6412904 5611612..5614689 1 NC_011004.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 5614689 6412904 Rpal_5204 Rhodopseudomonas palustris TIE-1 DNA polymerase I YP_001994167.1 5611612 D 395960 CDS YP_001994168.1 192293563 6412905 5615008..5615571 1 NC_011004.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 5615571 pyrE 6412905 pyrE Rhodopseudomonas palustris TIE-1 orotate phosphoribosyltransferase YP_001994168.1 5615008 D 395960 CDS YP_001994169.1 192293564 6412906 5615731..5616477 1 NC_011004.1 KEGG: bja:blr8135 hypothetical protein; hypothetical protein 5616477 6412906 Rpal_5206 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994169.1 5615731 D 395960 CDS YP_001994170.1 192293565 6412907 complement(5616751..5617182) 1 NC_011004.1 KEGG: bja:bll8136 hypothetical protein; hypothetical protein 5617182 6412907 Rpal_5207 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994170.1 5616751 R 395960 CDS YP_001994171.1 192293566 6412908 5617466..5620012 1 NC_011004.1 KEGG: bbt:BBta_7363 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 5620012 6412908 Rpal_5208 Rhodopseudomonas palustris TIE-1 glycogen/starch/alpha-glucan phosphorylase YP_001994171.1 5617466 D 395960 CDS YP_001994172.1 192293567 6412909 5620293..5621126 1 NC_011004.1 KEGG: bja:blr8140 hypothetical protein; hypothetical protein 5621126 6412909 Rpal_5209 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994172.1 5620293 D 395960 CDS YP_001994173.1 192293568 6412910 5621182..5622165 1 NC_011004.1 TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: nwi:Nwi_0352 arginase; arginase 5622165 6412910 Rpal_5210 Rhodopseudomonas palustris TIE-1 arginase YP_001994173.1 5621182 D 395960 CDS YP_001994174.1 192293569 6412911 5622436..5623395 1 NC_011004.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: cak:Caul_4355 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 5623395 6412911 Rpal_5211 Rhodopseudomonas palustris TIE-1 transposase IS116/IS110/IS902 family protein YP_001994174.1 5622436 D 395960 CDS YP_001994175.1 192293570 6412912 5623522..5625141 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO3397 ABC transporter ATP-binding protein with duplicated ATPase domains; ABC transporter 5625141 6412912 Rpal_5212 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001994175.1 5623522 D 395960 CDS YP_001994176.1 192293571 6412913 complement(5625289..5626482) 1 NC_011004.1 KEGG: nha:Nham_0672 hypothetical protein; hypothetical protein 5626482 6412913 Rpal_5213 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994176.1 5625289 R 395960 CDS YP_001994177.1 192293572 6412914 5626643..5627221 1 NC_011004.1 PFAM: ChaC family protein; AIG2 family protein; KEGG: bbt:BBta_1180 cation transport protein ChaC-related; ChaC family protein 5627221 6412914 Rpal_5214 Rhodopseudomonas palustris TIE-1 ChaC family protein YP_001994177.1 5626643 D 395960 CDS YP_001994178.1 192293573 6412915 complement(5627238..5628047) 1 NC_011004.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: bbt:BBta_1179 1-acylglycerol-3-phosphate O-acyltransferase (PlsC); phospholipid/glycerol acyltransferase 5628047 6412915 Rpal_5215 Rhodopseudomonas palustris TIE-1 phospholipid/glycerol acyltransferase YP_001994178.1 5627238 R 395960 CDS YP_001994179.1 192293574 6412916 complement(5628061..5628786) 1 NC_011004.1 PFAM: protein of unknown function DUF218; KEGG: nha:Nham_0669 protein of unknown function DUF218; hypothetical protein 5628786 6412916 Rpal_5216 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994179.1 5628061 R 395960 CDS YP_001994180.1 192293575 6412917 complement(5628942..5629928) 1 NC_011004.1 PFAM: protein of unknown function DUF214; KEGG: bja:blr1391 cell division protein; hypothetical protein 5629928 6412917 Rpal_5217 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994180.1 5628942 R 395960 CDS YP_001994181.1 192293576 6412918 complement(5629921..5630580) 1 NC_011004.1 KEGG: nha:Nham_0667 ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter; SMART: ATPase AAA; cell division ATP-binding protein FtsE 5630580 6412918 Rpal_5218 Rhodopseudomonas palustris TIE-1 cell division ATP-binding protein FtsE YP_001994181.1 5629921 R 395960 CDS YP_001994182.1 192293577 6412919 5630724..5631620 1 NC_011004.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: nha:Nham_0666 zinc finger/thioredoxin; hypothetical protein 5631620 6412919 Rpal_5219 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994182.1 5630724 D 395960 CDS YP_001994183.1 192293578 6412920 5631680..5632060 1 NC_011004.1 PFAM: response regulator receiver; KEGG: bja:bll1388 two-component response regulator; response regulator receiver protein 5632060 6412920 Rpal_5220 Rhodopseudomonas palustris TIE-1 response regulator receiver protein YP_001994183.1 5631680 D 395960 CDS YP_001994184.1 192293579 6412921 complement(5632259..5634811) 1 NC_011004.1 KEGG: nha:Nham_0664 hypothetical protein; hypothetical protein 5634811 6412921 Rpal_5221 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994184.1 5632259 R 395960 CDS YP_001994185.1 192293580 6412922 5634971..5635351 1 NC_011004.1 PFAM: carboxymuconolactone decarboxylase; KEGG: bja:bll1385 gamma carboxymuconolactone decarboxylase protein; carboxymuconolactone decarboxylase 5635351 6412922 Rpal_5222 Rhodopseudomonas palustris TIE-1 carboxymuconolactone decarboxylase YP_001994185.1 5634971 D 395960 CDS YP_001994186.1 192293581 6412923 complement(5635587..5636852) 1 NC_011004.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bbt:BBta_1147 diaminopimelate decarboxylase; diaminopimelate decarboxylase 5636852 6412923 Rpal_5223 Rhodopseudomonas palustris TIE-1 diaminopimelate decarboxylase YP_001994186.1 5635587 R 395960 CDS YP_001994187.1 192293582 6412924 complement(5636861..5637142) 1 NC_011004.1 KEGG: nwi:Nwi_0714 hypothetical protein; hypothetical protein 5637142 6412924 Rpal_5224 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994187.1 5636861 R 395960 CDS YP_001994188.1 192293583 6412925 complement(5637197..5638594) 1 NC_011004.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 5638594 6412925 Rpal_5225 Rhodopseudomonas palustris TIE-1 argininosuccinate lyase YP_001994188.1 5637197 R 395960 CDS YP_001994189.1 192293584 6412926 5638690..5639376 1 NC_011004.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bbt:BBta_1144 thiol disulfide interchange protein TlpA (cytochrome C biogenesis protein TlpA); redoxin domain-containing protein 5639376 6412926 Rpal_5226 Rhodopseudomonas palustris TIE-1 redoxin domain-containing protein YP_001994189.1 5638690 D 395960 CDS YP_001994190.1 192293585 6412927 complement(5639521..5639709) 1 NC_011004.1 KEGG: bbt:BBta_1143 exported protein of unknown function; hypothetical protein 5639709 6412927 Rpal_5227 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994190.1 5639521 R 395960 CDS YP_001994191.1 192293586 6412928 complement(5639818..5640636) 1 NC_011004.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: mlo:mll7814 quinone reductase; ribosyldihydronicotinamide dehydrogenase 5640636 6412928 Rpal_5228 Rhodopseudomonas palustris TIE-1 ribosyldihydronicotinamide dehydrogenase YP_001994191.1 5639818 R 395960 CDS YP_001994192.1 192293587 6412929 5640713..5641627 1 NC_011004.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mlo:mlr7815 transcriptional regulator; LysR family transcriptional regulator 5641627 6412929 Rpal_5229 Rhodopseudomonas palustris TIE-1 LysR family transcriptional regulator YP_001994192.1 5640713 D 395960 CDS YP_001994193.1 192293588 6412930 complement(5641642..5642523) 1 NC_011004.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 5642523 6412930 Rpal_5230 Rhodopseudomonas palustris TIE-1 3-hydroxybutyryl-CoA dehydrogenase YP_001994193.1 5641642 R 395960 CDS YP_001994194.1 192293589 6412931 complement(5642689..5643633) 1 NC_011004.1 PFAM: electron transfer flavoprotein alpha/beta-subunit ; electron transfer flavoprotein alpha subunit; KEGG: bja:blr1378 electron transfer flavoprotein large subunit; electron transfer flavoprotein alpha subunit 5643633 6412931 Rpal_5231 Rhodopseudomonas palustris TIE-1 electron transfer flavoprotein alpha subunit YP_001994194.1 5642689 R 395960 CDS YP_001994195.1 192293590 6412932 complement(5643633..5644382) 1 NC_011004.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: bja:blr1377 electron transfer flavoprotein beta subunit; electron transfer flavoprotein alpha/beta-subunit 5644382 6412932 Rpal_5232 Rhodopseudomonas palustris TIE-1 electron transfer flavoprotein alpha/beta-subunit YP_001994195.1 5643633 R 395960 CDS YP_001994196.1 192293591 6412933 complement(5644488..5645060) 1 NC_011004.1 TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: bja:blr1376 hypothetical protein; ATP/cobalamin adenosyltransferase 5645060 6412933 Rpal_5233 Rhodopseudomonas palustris TIE-1 ATP/cobalamin adenosyltransferase YP_001994196.1 5644488 R 395960 CDS YP_001994197.1 192293592 6412934 complement(5645113..5645307) 1 NC_011004.1 KEGG: bja:blr1375 hypothetical protein; hypothetical protein 5645307 6412934 Rpal_5234 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994197.1 5645113 R 395960 CDS YP_001994198.1 192293593 6412935 5645446..5646339 1 NC_011004.1 PFAM: ribonuclease BN; KEGG: bbt:BBta_1137 ribonuclease BN-like family transmembrane protein; ribonuclease BN 5646339 6412935 Rpal_5235 Rhodopseudomonas palustris TIE-1 ribonuclease BN YP_001994198.1 5645446 D 395960 CDS YP_001994199.1 192293594 6412936 complement(5646266..5647483) 1 NC_011004.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nha:Nham_3485 histidine kinase; histidine kinase 5647483 6412936 Rpal_5236 Rhodopseudomonas palustris TIE-1 histidine kinase YP_001994199.1 5646266 R 395960 CDS YP_001994200.1 192293595 6412937 complement(5647583..5648464) 1 NC_011004.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 5648464 6412937 Rpal_5237 Rhodopseudomonas palustris TIE-1 glutamyl-Q tRNA(Asp) synthetase YP_001994200.1 5647583 R 395960 CDS YP_001994201.1 192293596 6412938 5648585..5649304 1 NC_011004.1 PFAM: HhH-GPD family protein; KEGG: bja:bll1371 DNA-3-methyladenine glycosidase II; HhH-GPD family protein 5649304 6412938 Rpal_5238 Rhodopseudomonas palustris TIE-1 HhH-GPD family protein YP_001994201.1 5648585 D 395960 CDS YP_001994202.1 192293597 6412939 complement(5649440..5649883) 1 NC_011004.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 5649883 6412939 Rpal_5239 Rhodopseudomonas palustris TIE-1 nickel responsive regulator YP_001994202.1 5649440 R 395960 CDS YP_001994203.1 192293598 6412940 5650070..5652241 1 NC_011004.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bra:BRADO5677 outer membrane receptor; iron transport (COG1629); TonB-dependent receptor 5652241 6412940 Rpal_5240 Rhodopseudomonas palustris TIE-1 TonB-dependent receptor YP_001994203.1 5650070 D 395960 CDS YP_001994204.1 192293599 6412941 5652657..5653010 1 NC_011004.1 PFAM: PRC-barrel domain protein; KEGG: bra:BRADO3942 conserved hypothetical protein with photosynthetic reaction centre domain (PCR-barrel); PRC-barrel domain-containing protein 5653010 6412941 Rpal_5241 Rhodopseudomonas palustris TIE-1 PRC-barrel domain-containing protein YP_001994204.1 5652657 D 395960 CDS YP_001994205.1 192293600 6412942 complement(5653057..5654673) 1 NC_011004.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bra:BRADO0511 glycosyl hydrolase, family 13; alpha-glucosidase; alpha amylase 5654673 6412942 Rpal_5242 Rhodopseudomonas palustris TIE-1 alpha amylase YP_001994205.1 5653057 R 395960 CDS YP_001994206.1 192293601 6412944 5655187..5655720 1 NC_011004.1 hypothetical protein 5655720 6412944 Rpal_5244 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994206.1 5655187 D 395960 CDS YP_001994207.1 192293602 6412945 5656000..5656524 1 NC_011004.1 KEGG: yli:YALI0E34089g hypothetical protein; hypothetical protein 5656524 6412945 Rpal_5245 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994207.1 5656000 D 395960 CDS YP_001994208.1 192293603 6412946 complement(5656554..5656691) 1 NC_011004.1 hypothetical protein 5656691 6412946 Rpal_5246 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994208.1 5656554 R 395960 CDS YP_001994209.1 192293604 6412948 5657223..5657816 1 NC_011004.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: bja:bll1113 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 5657816 6412948 Rpal_5247 Rhodopseudomonas palustris TIE-1 methylated-DNA--protein-cysteine methyltransferase YP_001994209.1 5657223 D 395960 CDS YP_001994210.1 192293605 6412949 complement(5657813..5659249) 1 NC_011004.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: bbt:BBta_0771 cation-driven multidrug efflux pump; multi antimicrobial extrusion protein MatE 5659249 6412949 Rpal_5248 Rhodopseudomonas palustris TIE-1 multi antimicrobial extrusion protein MatE YP_001994210.1 5657813 R 395960 CDS YP_001994211.1 192293606 6412950 5659759..5661738 1 NC_011004.1 PFAM: metallophosphoesterase; KEGG: aba:Acid345_2905 metallophosphoesterase; metallophosphoesterase 5661738 6412950 Rpal_5249 Rhodopseudomonas palustris TIE-1 metallophosphoesterase YP_001994211.1 5659759 D 395960 CDS YP_001994212.1 192293607 6412951 complement(5661798..5662904) 1 NC_011004.1 Catalyzes the deamination of dCTP to form dUTP; 2'-deoxycytidine 5'-triphosphate deaminase 5662904 6412951 Rpal_5250 Rhodopseudomonas palustris TIE-1 2'-deoxycytidine 5'-triphosphate deaminase YP_001994212.1 5661798 R 395960 CDS YP_001994213.1 192293608 6412952 5663168..5664379 1 NC_011004.1 catalyzes the conversion of O-succinylhomoserine and sulfide to homocysteine; second step in methionine biosynthesis; O-succinylhomoserine sulfhydrylase 5664379 6412952 Rpal_5251 Rhodopseudomonas palustris TIE-1 O-succinylhomoserine sulfhydrylase YP_001994213.1 5663168 D 395960 CDS YP_001994214.1 192293609 6412953 complement(5664527..5665495) 1 NC_011004.1 PFAM: lipolytic protein G-D-S-L family; KEGG: bja:blr1104 hypothetical protein; G-D-S-L family lipolytic protein 5665495 6412953 Rpal_5252 Rhodopseudomonas palustris TIE-1 G-D-S-L family lipolytic protein YP_001994214.1 5664527 R 395960 CDS YP_001994215.1 192293610 6412954 complement(5665495..5666274) 1 NC_011004.1 KEGG: nha:Nham_0221 hypothetical protein; hypothetical protein 5666274 6412954 Rpal_5253 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994215.1 5665495 R 395960 CDS YP_001994216.1 192293611 6412955 complement(5666271..5667536) 1 NC_011004.1 KEGG: bja:blr1102 hypothetical protein; hypothetical protein 5667536 6412955 Rpal_5254 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994216.1 5666271 R 395960 CDS YP_001994217.1 192293612 6412956 5667787..5668179 1 NC_011004.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 5668179 apaG 6412956 apaG Rhodopseudomonas palustris TIE-1 ApaG protein YP_001994217.1 5667787 D 395960 CDS YP_001994218.1 192293613 6412957 complement(5668239..5669285) 1 NC_011004.1 KEGG: bja:bll2703 hypothetical protein; hypothetical protein 5669285 6412957 Rpal_5256 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994218.1 5668239 R 395960 CDS YP_001994219.1 192293614 6412958 complement(5670270..5671325) 1 NC_011004.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 5671325 hslO 6412958 hslO Rhodopseudomonas palustris TIE-1 Hsp33-like chaperonin YP_001994219.1 5670270 R 395960 CDS YP_001994220.1 192293615 6412959 complement(5671597..5672526) 1 NC_011004.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 5672526 6412959 Rpal_5258 Rhodopseudomonas palustris TIE-1 ornithine carbamoyltransferase YP_001994220.1 5671597 R 395960 CDS YP_001994221.1 192293616 6412960 complement(5672526..5673737) 1 NC_011004.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase protein 5673737 argD 6412960 argD Rhodopseudomonas palustris TIE-1 acetylornithine transaminase protein YP_001994221.1 5672526 R 395960 CDS YP_001994222.1 192293617 6412961 5674213..5674722 1 NC_011004.1 PFAM: GcrA cell cycle regulator; KEGG: nha:Nham_0641 GcrA cell cycle regulator; GcrA cell cycle regulator 5674722 6412961 Rpal_5260 Rhodopseudomonas palustris TIE-1 GcrA cell cycle regulator YP_001994222.1 5674213 D 395960 CDS YP_001994223.1 192293618 6412962 complement(5674963..5675676) 1 NC_011004.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bra:BRADO1679 response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family); winged helix family two component transcriptional regulator 5675676 6412962 Rpal_5261 Rhodopseudomonas palustris TIE-1 winged helix family two component transcriptional regulator YP_001994223.1 5674963 R 395960 CDS YP_001994224.1 192293619 6412963 complement(5675754..5676470) 1 NC_011004.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: bra:BRADO1678 transcriptional repressor for high-affinity phosphate uptake; phosphate uptake regulator PhoU 5676470 6412963 Rpal_5262 Rhodopseudomonas palustris TIE-1 phosphate uptake regulator PhoU YP_001994224.1 5675754 R 395960 CDS YP_001994225.1 192293620 6412964 complement(5676494..5677315) 1 NC_011004.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 5677315 pstB 6412964 pstB Rhodopseudomonas palustris TIE-1 phosphate transporter ATP-binding protein YP_001994225.1 5676494 R 395960 CDS YP_001994226.1 192293621 6412965 complement(5677312..5678175) 1 NC_011004.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO1676 high-affinity phosphate transport protein (ABC superfamily, membrane); phosphate ABC transporter permease 5678175 6412965 Rpal_5264 Rhodopseudomonas palustris TIE-1 phosphate ABC transporter permease YP_001994226.1 5677312 R 395960 CDS YP_001994227.1 192293622 6412966 complement(5678177..5679178) 1 NC_011004.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO1675 high-affinity phosphate transport protein (ABC superfamily, membrane); phosphate ABC transporter permease 5679178 6412966 Rpal_5265 Rhodopseudomonas palustris TIE-1 phosphate ABC transporter permease YP_001994227.1 5678177 R 395960 CDS YP_001994228.1 192293623 6412967 complement(5679392..5680402) 1 NC_011004.1 TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bbt:BBta_1986 high-affinity phosphate transport protein (ABC superfamily, peri_bind); phosphate ABC transporter substrate-binding protein 5680402 6412967 Rpal_5266 Rhodopseudomonas palustris TIE-1 phosphate ABC transporter substrate-binding protein YP_001994228.1 5679392 R 395960 CDS YP_001994229.1 192293624 6412968 complement(5680551..5681897) 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: bja:blr1090 phosphate regulon, two-component sensor histidine kinase; PAS/PAC sensor signal transduction histidine kinase 5681897 6412968 Rpal_5267 Rhodopseudomonas palustris TIE-1 PAS/PAC sensor signal transduction histidine kinase YP_001994229.1 5680551 R 395960 CDS YP_001994230.1 192293625 6412969 complement(5681901..5682935) 1 NC_011004.1 KEGG: bra:BRADO6783 hypothetical protein; hypothetical protein 5682935 6412969 Rpal_5268 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994230.1 5681901 R 395960 CDS YP_001994231.1 192293626 6412970 complement(5683183..5683479) 1 NC_011004.1 KEGG: nha:Nham_0632 hypothetical protein; hypothetical protein 5683479 6412970 Rpal_5269 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994231.1 5683183 R 395960 CDS YP_001994232.1 192293627 6412971 complement(5683483..5684877) 1 NC_011004.1 PFAM: OmpA/MotB domain protein; KEGG: bja:blr1084 hypothetical protein; OmpA/MotB domain-containing protein 5684877 6412971 Rpal_5270 Rhodopseudomonas palustris TIE-1 OmpA/MotB domain-containing protein YP_001994232.1 5683483 R 395960 CDS YP_001994233.1 192293628 6412972 5685033..5686091 1 NC_011004.1 PFAM: polysaccharide deacetylase; KEGG: bbt:BBta_0752 polysaccharide deacetylase; polysaccharide deacetylase 5686091 6412972 Rpal_5271 Rhodopseudomonas palustris TIE-1 polysaccharide deacetylase YP_001994233.1 5685033 D 395960 CDS YP_001994234.1 192293629 6412973 5686152..5686958 1 NC_011004.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_0751 short-chain dehydrogenase/reductase (SDR); short-chain dehydrogenase/reductase SDR 5686958 6412973 Rpal_5272 Rhodopseudomonas palustris TIE-1 short-chain dehydrogenase/reductase SDR YP_001994234.1 5686152 D 395960 CDS YP_001994235.1 192293630 6412974 5687181..5688098 1 NC_011004.1 consists of N-terminal helix-turn-helix domain and C-terminal shikimate kinase-like domain which may bind benzoyl-CoA; controls inducible expression of the bzd catabolic operon that is involved in the anaerobic catabolism of benzoate; anaerobic benzoate catabolism transcriptional regulator 5688098 6412974 Rpal_5273 Rhodopseudomonas palustris TIE-1 anaerobic benzoate catabolism transcriptional regulator YP_001994235.1 5687181 D 395960 CDS YP_001994236.1 192293631 6412975 complement(5688105..5689433) 1 NC_011004.1 PFAM: extracellular solute-binding protein family 1; KEGG: nha:Nham_3686 extracellular solute-binding protein, family 1; family 1 extracellular solute-binding protein 5689433 6412975 Rpal_5274 Rhodopseudomonas palustris TIE-1 family 1 extracellular solute-binding protein YP_001994236.1 5688105 R 395960 CDS YP_001994237.1 192293632 6412976 5689640..5691721 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: bja:bll1031 similar to histidine kinase; integral membrane sensor signal transduction histidine kinase 5691721 6412976 Rpal_5275 Rhodopseudomonas palustris TIE-1 integral membrane sensor signal transduction histidine kinase YP_001994237.1 5689640 D 395960 CDS YP_001994238.1 192293633 6412977 5691691..5693430 1 NC_011004.1 KEGG: nha:Nham_3684 response regulator receiver sensor signal transduction histidine kinase; TIGRFAM: phage head-tail adaptor; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver sensor signal transduction histidine kinase 5693430 6412977 Rpal_5276 Rhodopseudomonas palustris TIE-1 response regulator receiver sensor signal transduction histidine kinase YP_001994238.1 5691691 D 395960 CDS YP_001994239.1 192293634 6412978 5693427..5694167 1 NC_011004.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_3683 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 5694167 6412978 Rpal_5277 Rhodopseudomonas palustris TIE-1 winged helix family two component transcriptional regulator YP_001994239.1 5693427 D 395960 CDS YP_001994240.1 192293635 6412979 5694372..5694983 1 NC_011004.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 5694983 6412979 Rpal_5278 Rhodopseudomonas palustris TIE-1 RNA polymerase sigma factor YP_001994240.1 5694372 D 395960 CDS YP_001994241.1 192293636 6412980 5695490..5696896 1 NC_011004.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: bbt:BBta_0708 cytochrome bd ubiquinol oxidase, subunit I (CydA, QxtA); cytochrome bd ubiquinol oxidase subunit I 5696896 6412980 Rpal_5279 Rhodopseudomonas palustris TIE-1 cytochrome bd ubiquinol oxidase subunit I YP_001994241.1 5695490 D 395960 CDS YP_001994242.1 192293637 6412981 5696916..5697920 1 NC_011004.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: bbt:BBta_0707 cytochrome bd ubiquinol oxidase, subunit II (CydB, QxtB); cytochrome d ubiquinol oxidase subunit II 5697920 6412981 Rpal_5280 Rhodopseudomonas palustris TIE-1 cytochrome d ubiquinol oxidase subunit II YP_001994242.1 5696916 D 395960 CDS YP_001994243.1 192293638 6412982 5697917..5698048 1 NC_011004.1 hypothetical protein 5698048 6412982 Rpal_5281 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994243.1 5697917 D 395960 CDS YP_001994244.1 192293639 6412983 5698090..5698683 1 NC_011004.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bra:BRADO6837 conserved hypothetical protein; signal peptide; ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 5698683 6412983 Rpal_5282 Rhodopseudomonas palustris TIE-1 ErfK/YbiS/YcfS/YnhG family protein YP_001994244.1 5698090 D 395960 CDS YP_001994245.1 192293640 6412984 5698729..5699763 1 NC_011004.1 SMART: extracellular solute-binding protein family 3; KEGG: bra:BRADO6838 general L-amino acid-binding periplasmic protein; family 3 extracellular solute-binding protein 5699763 6412984 Rpal_5283 Rhodopseudomonas palustris TIE-1 family 3 extracellular solute-binding protein YP_001994245.1 5698729 D 395960 CDS YP_001994246.1 192293641 6412985 complement(5700162..5701301) 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_0703 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 5701301 6412985 Rpal_5284 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001994246.1 5700162 R 395960 CDS YP_001994247.1 192293642 6412986 complement(5701469..5702653) 1 NC_011004.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bbt:BBta_0702 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 5702653 6412986 Rpal_5285 Rhodopseudomonas palustris TIE-1 acyl-CoA dehydrogenase domain-containing protein YP_001994247.1 5701469 R 395960 CDS YP_001994248.1 192293643 6412987 5702818..5703363 1 NC_011004.1 PFAM: carboxymuconolactone decarboxylase; KEGG: bbt:BBta_0701 hypothetical protein; carboxymuconolactone decarboxylase 5703363 6412987 Rpal_5286 Rhodopseudomonas palustris TIE-1 carboxymuconolactone decarboxylase YP_001994248.1 5702818 D 395960 CDS YP_001994249.1 192293644 6412988 complement(5703418..5704635) 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr1018 hypothetical protein; major facilitator superfamily protein 5704635 6412988 Rpal_5287 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001994249.1 5703418 R 395960 CDS YP_001994250.1 192293645 6412989 complement(5704721..5705968) 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr1017 MFS permease; major facilitator superfamily protein 5705968 6412989 Rpal_5288 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001994250.1 5704721 R 395960 CDS YP_001994251.1 192293646 6412990 complement(5706044..5706760) 1 NC_011004.1 PFAM: protein of unknown function DUF938; KEGG: bbt:BBta_0698 hypothetical protein; hypothetical protein 5706760 6412990 Rpal_5289 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994251.1 5706044 R 395960 CDS YP_001994252.1 192293647 6412991 5707204..5709225 1 NC_011004.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_2621 TonB-dependent receptor, plug; TonB-dependent receptor plug 5709225 6412991 Rpal_5290 Rhodopseudomonas palustris TIE-1 TonB-dependent receptor plug YP_001994252.1 5707204 D 395960 CDS YP_001994253.1 192293648 6412992 5709408..5709695 1 NC_011004.1 KEGG: nwi:Nwi_2376 hypothetical protein; hypothetical protein 5709695 6412992 Rpal_5291 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994253.1 5709408 D 395960 CDS YP_001994254.1 192293649 6412993 5709869..5710063 1 NC_011004.1 hypothetical protein 5710063 6412993 Rpal_5292 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994254.1 5709869 D 395960 CDS YP_001994255.1 192293650 6412995 5711582..5712802 1 NC_011004.1 KEGG: bra:BRADO0975 ABC-type branched-chain amino acid transporter periplasmic binding protein; branched-chain amino acid ABC transporter periplasmic protein 5712802 6412995 Rpal_5294 Rhodopseudomonas palustris TIE-1 branched-chain amino acid ABC transporter periplasmic protein YP_001994255.1 5711582 D 395960 CDS YP_001994256.1 192293651 6412996 complement(5712919..5714205) 1 NC_011004.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr1003 hypothetical protein; major facilitator superfamily protein 5714205 6412996 Rpal_5295 Rhodopseudomonas palustris TIE-1 major facilitator superfamily protein YP_001994256.1 5712919 R 395960 CDS YP_001994257.1 192293652 6412997 5714478..5715131 1 NC_011004.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_0686 ABC transporter ATP-binding protein; ABC transporter 5715131 6412997 Rpal_5296 Rhodopseudomonas palustris TIE-1 ABC transporter YP_001994257.1 5714478 D 395960 CDS YP_001994258.1 192293653 6412998 5715128..5717593 1 NC_011004.1 PFAM: protein of unknown function DUF214; KEGG: bja:bll1001 probable ABC transporter permease protein; hypothetical protein 5717593 6412998 Rpal_5297 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994258.1 5715128 D 395960 CDS YP_001994259.1 192293654 6412999 5717583..5718668 1 NC_011004.1 KEGG: nha:Nham_0344 hypothetical protein; hypothetical protein 5718668 6412999 Rpal_5298 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994259.1 5717583 D 395960 CDS YP_001994260.1 192293655 6413000 5718735..5719127 1 NC_011004.1 PFAM: membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); KEGG: bja:bll0998 hypothetical protein; eicosanoid and glutathione metabolism membrane protein 5719127 6413000 Rpal_5299 Rhodopseudomonas palustris TIE-1 eicosanoid and glutathione metabolism membrane protein YP_001994260.1 5718735 D 395960 CDS YP_001994261.1 192293656 6413001 complement(5719391..5720584) 1 NC_011004.1 KEGG: bja:blr0998 probable periplasmic substrate binding protein; periplasmic substrate binding protein 5720584 6413001 Rpal_5300 Rhodopseudomonas palustris TIE-1 periplasmic substrate binding protein YP_001994261.1 5719391 R 395960 CDS YP_001994262.1 192293657 6413002 complement(5720670..5722355) 1 NC_011004.1 KEGG: bja:bll1872 hypothetical protein; hypothetical protein 5722355 6413002 Rpal_5301 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994262.1 5720670 R 395960 CDS YP_001994263.1 192293658 6413003 complement(5722443..5724329) 1 NC_011004.1 molecular chaperone; heat shock protein 90 5724329 6413003 Rpal_5302 Rhodopseudomonas palustris TIE-1 heat shock protein 90 YP_001994263.1 5722443 R 395960 CDS YP_001994264.1 192293659 6413004 complement(5724417..5725793) 1 NC_011004.1 PFAM: ATP-binding region ATPase domain protein; KEGG: nha:Nham_1886 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 5725793 6413004 Rpal_5303 Rhodopseudomonas palustris TIE-1 integral membrane sensor signal transduction histidine kinase YP_001994264.1 5724417 R 395960 CDS YP_001994265.1 192293660 6413005 complement(5725790..5726455) 1 NC_011004.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_1885 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 5726455 6413005 Rpal_5304 Rhodopseudomonas palustris TIE-1 winged helix family two component transcriptional regulator YP_001994265.1 5725790 R 395960 CDS YP_001994266.1 192293661 6413006 complement(5726455..5726793) 1 NC_011004.1 PFAM: propeptide PepSY amd peptidase M4; KEGG: nha:Nham_1884 propeptide, PepSY amd peptidase M4; propeptide PepSY amd peptidase M4 5726793 6413006 Rpal_5305 Rhodopseudomonas palustris TIE-1 propeptide PepSY amd peptidase M4 YP_001994266.1 5726455 R 395960 CDS YP_001994267.1 192293662 6413007 complement(5726891..5727199) 1 NC_011004.1 hypothetical protein 5727199 6413007 Rpal_5306 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994267.1 5726891 R 395960 CDS YP_001994268.1 192293663 6413008 complement(5727383..5728507) 1 NC_011004.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 5728507 mtnA 6413008 mtnA Rhodopseudomonas palustris TIE-1 methylthioribose-1-phosphate isomerase YP_001994268.1 5727383 R 395960 CDS YP_001994269.1 192293664 6413009 complement(5728682..5729557) 1 NC_011004.1 Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate; 5'-methylthioadenosine phosphorylase 5729557 6413009 Rpal_5308 Rhodopseudomonas palustris TIE-1 5'-methylthioadenosine phosphorylase YP_001994269.1 5728682 R 395960 CDS YP_001994270.1 192293665 6413010 5729840..5730979 1 NC_011004.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: bja:bll0995 maleylacetate reductase; iron-containing alcohol dehydrogenase 5730979 6413010 Rpal_5309 Rhodopseudomonas palustris TIE-1 iron-containing alcohol dehydrogenase YP_001994270.1 5729840 D 395960 CDS YP_001994271.1 192293666 6413011 5731145..5732695 1 NC_011004.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 5732695 6413011 Rpal_5310 Rhodopseudomonas palustris TIE-1 acyl-CoA synthetase YP_001994271.1 5731145 D 395960 CDS YP_001994272.1 192293667 6413012 complement(5732740..5733114) 1 NC_011004.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: pla:Plav_3012 ethyl tert-butyl ether degradation EthD; ethyl tert-butyl ether degradation EthD 5733114 6413012 Rpal_5311 Rhodopseudomonas palustris TIE-1 ethyl tert-butyl ether degradation EthD YP_001994272.1 5732740 R 395960 CDS YP_001994273.1 192293668 6413013 5733186..5733539 1 NC_011004.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: smd:Smed_4100 transcriptional regulator, MerR family; MerR family transcriptional regulator 5733539 6413013 Rpal_5312 Rhodopseudomonas palustris TIE-1 MerR family transcriptional regulator YP_001994273.1 5733186 D 395960 CDS YP_001994274.1 192293669 6413014 5733615..5735465 1 NC_011004.1 KEGG: bbt:BBta_6924 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 5735465 6413014 Rpal_5313 Rhodopseudomonas palustris TIE-1 ATP-dependent DNA helicase RecQ YP_001994274.1 5733615 D 395960 CDS YP_001994275.1 192293670 6413015 5735532..5735759 1 NC_011004.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: azc:AZC_4413 hypothetical protein; FmdB family regulatory protein 5735759 6413015 Rpal_5314 Rhodopseudomonas palustris TIE-1 FmdB family regulatory protein YP_001994275.1 5735532 D 395960 CDS YP_001994276.1 192293671 6413016 complement(5735783..5736061) 1 NC_011004.1 KEGG: bbt:BBta_7859 exported protein of unknown function; hypothetical protein 5736061 6413016 Rpal_5315 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994276.1 5735783 R 395960 CDS YP_001994277.1 192293672 6413017 5736341..5737927 1 NC_011004.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll0843 crotonobetaine/carnitine-CoA ligase; AMP-dependent synthetase and ligase 5737927 6413017 Rpal_5316 Rhodopseudomonas palustris TIE-1 AMP-dependent synthetase and ligase YP_001994277.1 5736341 D 395960 CDS YP_001994278.1 192293673 6413018 complement(5738035..5739138) 1 NC_011004.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: bja:blr0842 hypothetical protein; response regulator receiver modulated metal dependent phosphohydrolase 5739138 6413018 Rpal_5317 Rhodopseudomonas palustris TIE-1 response regulator receiver modulated metal dependent phosphohydrolase YP_001994278.1 5738035 R 395960 CDS YP_001994279.1 192293674 6413019 5739356..5739724 1 NC_011004.1 KEGG: nha:Nham_4036 hypothetical protein; hypothetical protein 5739724 6413019 Rpal_5318 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994279.1 5739356 D 395960 CDS YP_001994280.1 192293675 6413020 5739780..5740451 1 NC_011004.1 PFAM: dienelactone hydrolase; KEGG: bbt:BBta_7870 carboxymethylenebutenolidase; carboxymethylenebutenolidase 5740451 6413020 Rpal_5319 Rhodopseudomonas palustris TIE-1 carboxymethylenebutenolidase YP_001994280.1 5739780 D 395960 CDS YP_001994281.1 192293676 6413021 complement(5740478..5741119) 1 NC_011004.1 PFAM: polysaccharide export protein; KEGG: bja:blr0835 probable polysaccharide export protein; polysaccharide export protein 5741119 6413021 Rpal_5320 Rhodopseudomonas palustris TIE-1 polysaccharide export protein YP_001994281.1 5740478 R 395960 CDS YP_001994282.1 192293677 6413022 complement(5741254..5741910) 1 NC_011004.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 5741910 6413022 Rpal_5321 Rhodopseudomonas palustris TIE-1 methionine sulfoxide reductase A YP_001994282.1 5741254 R 395960 CDS YP_001994283.1 192293678 6413023 complement(5742078..5742395) 1 NC_011004.1 KEGG: bja:blr0833 hypothetical protein; hypothetical protein 5742395 6413023 Rpal_5322 Rhodopseudomonas palustris TIE-1 hypothetical protein YP_001994283.1 5742078 R 395960 CDS YP_001994284.1 192293679 6413024 5742761..5743027 1 NC_011004.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 5743027 rpsT 6413024 rpsT Rhodopseudomonas palustris TIE-1 30S ribosomal protein S20 YP_001994284.1 5742761 D 395960 CDS