-- dump date 20140620_032850 -- class Genbank::CDS -- table cds_note -- id note YP_001989039.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001989040.1 binds the polymerase to DNA and acts as a sliding clamp YP_001989041.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_001989042.1 negatively supercoils closed circular double-stranded DNA YP_001989043.1 KEGG: bja:bll0339 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_001989044.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bja:blr0340 transcriptional regulatory protein YP_001989045.1 KEGG: rru:Rru_A2544 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001989046.1 PFAM: KaiB domain protein; KEGG: rru:Rru_A2543 KaiB YP_001989047.1 acts as a promotor non-specific transcription repressor YP_001989048.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bra:BRADO0760 transcriptional regulatory protein, AsnC/Lrp family YP_001989049.1 KEGG: bbt:BBta_2219 hypothetical protein YP_001989051.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: bra:BRADO2445 nitrogen fixation protein FixS YP_001989052.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_2797 nitrogen fixation protein FixI YP_001989053.1 PFAM: FixH family protein; KEGG: bra:BRADO2443 nitrogen fixation protein FixH YP_001989054.1 TIGRFAM: cytochrome C oxidase accessory protein CcoG; KEGG: bbt:BBta_2795 nitrogen fixation protein YP_001989055.1 TIGRFAM: cytochrome C oxidase, cbb3-type, subunit III; PFAM: cytochrome C class I; KEGG: bra:BRADO2441 cytochrome-c oxidase FixP chain YP_001989056.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: bra:BRADO2440 cytochrome oxidase subunit, FixQ YP_001989057.1 CcoO; FixO YP_001989058.1 CcoN; FixN YP_001989059.1 KEGG: bbt:BBta_0313 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein YP_001989060.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO0329 acetoin(diacetyl) reductase (acetoin dehydrogenase) (AR) (meso-2,3-butanediol dehydrogenase); oxidoreductase, short chain dehydrogenase; short chain dehydrogenase YP_001989061.1 PFAM: DSBA oxidoreductase; KEGG: bja:blr0588 hypothetical protein YP_001989062.1 PFAM: glutathione S-transferase domain; KEGG: bja:bll0585 glutathione S-transferase family protein YP_001989063.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mex:Mext_3612 short-chain dehydrogenase/reductase SDR YP_001989064.1 KEGG: nha:Nham_0191 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_001989065.1 PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_0192 major facilitator superfamily MFS_1 YP_001989066.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_001989067.1 involved in de novo purine biosynthesis YP_001989068.1 PFAM: heparinase II/III family protein; KEGG: bja:blr0580 hypothetical protein YP_001989069.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: bja:blr0579 SUN protein YP_001989070.1 PFAM: protein of unknown function DUF1674; KEGG: bbt:BBta_0326 hypothetical protein YP_001989071.1 PFAM: nuclease (SNase domain protein); KEGG: nwi:Nwi_0154 staphylococcus nuclease (SNase-like) YP_001989072.1 KEGG: bra:BRADO0145 hypothetical protein YP_001989073.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bja:blr0703 hypothetical protein YP_001989074.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001989075.1 PFAM: protein of unknown function DUF559; KEGG: bbt:BBta_0213 hypothetical protein YP_001989076.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001989077.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001989078.1 PFAM: ribosomal protein L35; KEGG: bbt:BBta_0216 50S ribosomal protein L35 YP_001989079.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_001989080.1 KEGG: bra:BRADO0132 conserved hypothetical protein, alpha/beta hydrolase superfamily YP_001989081.1 PFAM: domain of unknown function DUF1730; KEGG: bja:bll0714 iron-sulfur cluster binding protein YP_001989082.1 PFAM: glutathione S-transferase domain; KEGG: bbt:BBta_0222 glutathione S-transferase family protein YP_001989083.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_001989084.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: bra:BRADO0128 conserved hypothetical protein; NAD dependent epimerase/dehydratase family protein YP_001989085.1 PFAM: 3'-5' exonuclease; KEGG: bja:blr0719 hypothetical protein YP_001989086.1 PFAM: protein of unknown function DUF1239; KEGG: bja:blr0720 hypothetical protein YP_001989087.1 PFAM: OstA family protein; KEGG: nha:Nham_0177 OstA-like protein YP_001989088.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nwi:Nwi_0174 ABC transporter ATPase subunit YP_001989090.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_001989091.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: bbt:BBta_0120 sigma (54) modulation protein YP_001989092.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: bra:BRADO0111 nitrogen regulatory protein YP_001989093.1 PFAM: protein of unknown function DUF1150; KEGG: bbt:BBta_0116 hypothetical protein YP_001989094.1 PFAM: heat shock protein Hsp20; KEGG: bja:bll0729 small heat shock protein YP_001989095.1 part of the UgpABCE glycerol-3-phosphate uptake system YP_001989096.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:bll0731 glycerol-3-phosphate ABC transporter membrane spanning protein YP_001989097.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:bll0732 glycerol-3-phosphate ABC transporter permease protein YP_001989098.1 PFAM: extracellular solute-binding protein family 1; KEGG: bja:bll0733 ABC transporter glycerol-3-phosphate-binding protein YP_001989099.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:bll0734 hypothetical protein YP_001989100.1 PFAM: excinuclease ABC subunit C; KEGG: rle:RL0110 hypothetical protein YP_001989101.1 PFAM: conserved hypothetical protein; KEGG: bja:bll0737 hypothetical protein YP_001989102.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001989103.1 PFAM: protein of unknown function DUF374; KEGG: mag:amb4091 hypothetical protein YP_001989104.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_001989105.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001989106.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: bra:BRADO0095 peptidase S49 family; signal peptide peptidase SppA YP_001989107.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_001989108.1 KEGG: bja:blr0743 hypothetical protein YP_001989109.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_001989110.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001989111.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_001989112.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_001989113.1 KEGG: nha:Nham_0060 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein YP_001989114.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: bbt:BBta_0091 thioredoxin 1, redox factor YP_001989115.1 TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: bja:bll0752 helicase 2 YP_001989116.1 TIGRFAM: double-strand break repair protein AddB; KEGG: bbt:BBta_0089 helicase-exonuclease type V protein family, AddB subunit YP_001989117.1 PFAM: nucleotidyl transferase; KEGG: nha:Nham_0056 nucleotidyl transferase YP_001989118.1 KEGG: bbt:BBta_0087 hypothetical protein YP_001989119.1 PFAM: aminoglycoside phosphotransferase; protein of unknown function UPF0079; KEGG: nha:Nham_0054 protein of unknown function UPF0079 YP_001989120.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: nwi:Nwi_0045 histidine kinase YP_001989121.1 catalyzes the formation of dUMP from dUTP YP_001989122.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; in the alphaproteobacteria, this protein contains an N-terminal SbtC-like domain YP_001989123.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: bbt:BBta_0082 ubiquinone biosynthesis protein UbiB YP_001989124.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_001989125.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_001989126.1 PFAM: peptidoglycan-binding domain 1 protein; KEGG: bja:bll0764 hypothetical protein YP_001989127.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: bja:blr0765 molybdopterin biosynthesis protein YP_001989128.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: bja:blr0559 MFS permease YP_001989130.1 KEGG: bra:BRADO0286 conserved hypothetical protein; signal peptide YP_001989131.1 KEGG: bja:blr3464 hypothetical protein YP_001989133.1 KEGG: mex:Mext_0878 collagen triple helix repeat YP_001989134.1 KEGG: bra:BRADO2381 hypothetical protein YP_001989135.1 PFAM: regulatory protein TetR; KEGG: bbt:BBta_2740 transcriptional regulator, TetR family YP_001989136.1 PFAM: PepSY-associated TM helix domain protein; KEGG: bja:bll3835 hypothetical protein YP_001989137.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: nha:Nham_0992 secretion protein HlyD YP_001989138.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: nha:Nham_0993 hydrophobe/amphiphile efflux-1 HAE1 YP_001989139.1 PFAM: protein of unknown function DUF1078 domain protein; KEGG: bra:BRADO6624 flagellar basal-body rod protein (FlgC) YP_001989140.1 KEGG: mrd:Mrad2831_4760 oligopeptide/dipeptide ABC transporter ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA YP_001989141.1 KEGG: mrd:Mrad2831_4761 oligopeptide/dipeptide ABC transporter ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA YP_001989142.1 PFAM: ABC transporter inner membrane protein; KEGG: mrd:Mrad2831_4762 ABC transporter inner membrane protein YP_001989143.1 PFAM: ABC transporter inner membrane protein; KEGG: mrd:Mrad2831_4763 ABC transporter inner membrane protein YP_001989144.1 PFAM: extracellular solute-binding protein family 5; KEGG: mrd:Mrad2831_4764 extracellular solute-binding protein family 5 YP_001989145.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mrd:Mrad2831_4765 cobalamin synthesis protein P47K YP_001989146.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mrd:Mrad2831_4766 amidohydrolase 3 YP_001989147.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: mrd:Mrad2831_4755 transcriptional regulator, GntR family with aminotransferase domain protein YP_001989148.1 KEGG: bra:BRADO6883 ABC transporter substrate-binding protein; branched-chain amino acid transporter YP_001989149.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gme:Gmet_2235 alcohol dehydrogenase superfamily, zinc-containing YP_001989150.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: mjl:Mjls_2332 thiamine pyrophosphate enzyme TPP binding domain protein YP_001989151.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_0924 oxidoreductase, short chain dehydrogenase/reductase family YP_001989152.1 PFAM: regulatory protein TetR; KEGG: hne:HNE_2415 transcriptional regulator, TetR family YP_001989153.1 PFAM: protein of unknown function DUF81; KEGG: mrd:Mrad2831_4756 protein of unknown function DUF81 YP_001989154.1 PFAM: Aldehyde Dehydrogenase_; KEGG: mrd:Mrad2831_4757 aldehyde dehydrogenase YP_001989155.1 PFAM: protein of unknown function DUF1486; KEGG: mrd:Mrad2831_4758 protein of unknown function DUF1486 YP_001989156.1 PFAM: FAD dependent oxidoreductase; KEGG: mrd:Mrad2831_4759 FAD dependent oxidoreductase YP_001989157.1 KEGG: xau:Xaut_4360 hypothetical protein YP_001989158.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: azc:AZC_1833 dTDP-D-glucose-4,6-dehydratase YP_001989159.1 KEGG: rru:Rru_B0038 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_001989160.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rle:RL1624 dTDP-4-dehydrorhamnose reductase YP_001989161.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: ccr:CC_1141 glucose-1-phosphate thymidylyltransferase YP_001989162.1 KEGG: azc:AZC_3956 hypothetical protein YP_001989163.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: ava:Ava_1003 multi-sensor signal transduction histidine kinase YP_001989164.1 PFAM: TrkA-N domain protein; ion transport 2 domain protein; KEGG: eba:ebA5259 KTN NAD-binding domain involved with K+ transport precursor YP_001989165.1 PFAM: metallophosphoesterase; KEGG: bja:bll4141 hypothetical protein YP_001989166.1 PFAM: metallophosphoesterase; KEGG: mlo:mll3631 3',5'-cyclic-nucleotide phosphodiesterase, CpdA YP_001989167.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcs:BCAN_B1211 hypothetical protein YP_001989168.1 PFAM: ABC transporter inner membrane protein; KEGG: bcs:BCAN_B1212 lactose transport system permease protein LacG YP_001989169.1 PFAM: ABC transporter inner membrane protein; KEGG: oan:Oant_1668 ABC transporter inner membrane protein YP_001989170.1 PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: sil:SPO1823 sugar ABC transporter ATP-binding protein YP_001989171.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMb21535 transcriptional regulator, LysR family protein YP_001989172.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: smd:Smed_4541 sulfate ABC transporter ATPase subunit YP_001989173.1 PFAM: ABC transporter inner membrane protein; KEGG: xau:Xaut_4037 ABC transporter inner membrane protein YP_001989174.1 KEGG: sth:STH760 ABC transporter substrate-binding protein YP_001989175.1 TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: dvu:DVU1771 [Fe] hydrogenase gamma YP_001989176.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvl:Dvul_1383 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001989177.1 KEGG: bja:blr2350 hypothetical protein YP_001989178.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: bja:blr2349 chemotaxis two-component response regulator YP_001989179.1 PFAM: MCP methyltransferase CheR-type; KEGG: bja:blr2348 protein-glutamate O-methyltransferase YP_001989180.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_7837 methyl-accepting chemotaxis protein (MCP) YP_001989181.1 PFAM: CheW domain protein; KEGG: bbt:BBta_7835 chemotaxis protein CheW YP_001989182.1 PFAM: CheW domain protein; KEGG: bja:blr2344 probable chemotaxis protein YP_001989183.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: bbt:BBta_6737 chemotaxis protein CheA YP_001989184.1 PFAM: response regulator receiver; KEGG: bja:blr2342 chemotaxis two-component response regulator YP_001989185.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: bja:blr2341 hypothetical protein YP_001989186.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: bja:bll2340 two-component response regulator YP_001989188.1 KEGG: bra:BRADO0437 conserved hypothetical protein; glucokinase YP_001989189.1 PFAM: ribosomal protein L21; KEGG: nwi:Nwi_0439 50S ribosomal protein L21 YP_001989190.1 involved in the peptidyltransferase reaction during translation YP_001989191.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_0516 GCN5-related N-acetyltransferase YP_001989194.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:bll0423 hypothetical protein YP_001989195.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_001989196.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001989197.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_001989198.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_001989199.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: bbt:BBta_0417 hypothetical protein YP_001989200.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_001989201.1 PFAM: peptidase M23; KEGG: nha:Nham_0524 peptidase M23B YP_001989202.1 KEGG: bja:blr0434 carboxy-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001989203.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: nha:Nham_0526 protein of unknown function DUF610, YibQ YP_001989204.1 hydrolyzes diadenosine polyphosphate YP_001989205.1 KEGG: mex:Mext_4348 hypothetical protein YP_001989206.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: mca:MCA1165 NAD-dependent epimerase/dehydratase family protein YP_001989207.1 hydrolyzes diadenosine polyphosphate YP_001989208.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_001989209.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001989210.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_001989211.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001989212.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_001989213.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: bja:blr044 hypothetical protein YP_001989214.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_001989215.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_001989216.1 KEGG: bbt:BBta_0400 membrane protein of unknown function YP_001989217.1 KEGG: bja:bll0448 hypothetical protein YP_001989218.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide YP_001989219.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_0397 oxidoreductase (YgfF), NAD(P)-binding domain YP_001989220.1 KEGG: bcs:BCAN_A1965 hypothetical protein YP_001989221.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_001989222.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_001989223.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: bbt:BBta_0394 succinyl-CoA synthetase, alpha subunit, NAD(P)-binding YP_001989224.1 catalyzes the interconversion of succinyl-CoA and succinate YP_001989225.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_001989226.1 PFAM: AFG1-family ATPase; KEGG: bra:BRADO0402 ATPase (YhcM) AFG1 family YP_001989227.1 TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: bra:BRADO0401 2'-5' RNA ligase YP_001989228.1 PFAM: lipolytic protein G-D-S-L family; KEGG: bja:bll0459 esterase YP_001989229.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr0460 probable ABC transporter ATP-binding protein YP_001989230.1 PFAM: protein of unknown function DUF214; KEGG: nha:Nham_0550 protein of unknown function DUF214 YP_001989231.1 PFAM: aminoglycoside phosphotransferase; KEGG: pap:PSPA7_3721 aminoglycoside 3'-phosphotransferase YP_001989232.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_0238 GCN5-related N-acetyltransferase YP_001989233.1 KEGG: nha:Nham_0406 hypothetical protein YP_001989234.1 PFAM: protein of unknown function DUF1223; KEGG: nha:Nham_0407 protein of unknown function DUF1223 YP_001989235.1 Catalyzes the conversion of citrate to isocitrate YP_001989236.1 ATP-binding protein; required for proper cytochrome C maturation YP_001989237.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome C-type biogenesis protein CcmB; KEGG: bja:blr0468 heme exporter protein B YP_001989238.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome C assembly protein; KEGG: nwi:Nwi_0320 cytochrome C-type biogenesis protein CcmC YP_001989239.1 TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); KEGG: nha:Nham_0412 heme exporter protein D (CcmD) YP_001989240.1 TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: bja:blr0471 thiol:disulfide interchange protein YP_001989241.1 KEGG: mex:Mext_2496 hypothetical protein YP_001989242.1 Involved in cell division; probably involved in intracellular septation YP_001989243.1 KEGG: bja:bll0473 probable cell division protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_001989244.1 PFAM: pseudouridine synthase; KEGG: bra:BRADO0385 RNA pseudouridine synthase (uracil hydrolyase) YP_001989245.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_001989246.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr0574 hypothetical protein YP_001989247.1 PFAM: OmpA/MotB domain protein; KEGG: bra:BRADO0242 hypothetical protein YP_001989248.1 KEGG: ani:AN5649.2 hypothetical protein YP_001989249.1 KEGG: bja:bsr0520 hypothetical protein YP_001989250.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bbt:BBta_0235 hypothetical protein YP_001989251.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_001989252.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_001989253.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: nha:Nham_3617 succinate dehydrogenase, cytochrome b subunit YP_001989254.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: bja:blr0512 succinate dehydrogenase cytochrome b-556 subunit YP_001989255.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: nha:Nham_3422 cation diffusion facilitator family transporter YP_001989256.1 catalyzes the formation of malonyl-CoA from malonate and CoA YP_001989257.1 PFAM: beta-Ig-H3/fasciclin; KEGG: bbt:BBta_0336 exported protein of unknown function with Fas1 domain YP_001989258.1 KEGG: bja:bll0506 hypothetical protein YP_001989259.1 PFAM: oxidoreductase molybdopterin binding; KEGG: nha:Nham_3598 oxidoreductase, molybdopterin binding YP_001989260.1 PFAM: superoxide dismutase copper/zinc binding; KEGG: nha:Nham_3597 superoxide dismutase, copper/zinc binding YP_001989261.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: bja:blr0503 hypothetical protein YP_001989262.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001989263.1 KEGG: nha:Nham_3594 hypothetical protein YP_001989264.1 KEGG: bbt:BBta_0343 hypothetical protein YP_001989265.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_001989266.1 PFAM: conserved hypothetical protein; KEGG: bra:BRADO0359 hypothetical protein YP_001989267.1 PFAM: carbonic anhydrase; KEGG: bbt:BBta_0346 carbonic anhydrase 2 YP_001989268.1 PFAM: HpcH/HpaI aldolase; KEGG: bbt:BBta_0347 citrate lyase beta chain YP_001989269.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mag:amb3991 methyl-accepting chemotaxis protein YP_001989270.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_001989271.1 PFAM: protein of unknown function DUF1025; KEGG: bja:blr0494 hypothetical protein YP_001989272.1 KEGG: bbt:BBta_0353 exported protein of unknown function YP_001989273.1 KEGG: nwi:Nwi_2788 hypothetical protein YP_001989274.1 KEGG: nha:Nham_3587 hypothetical protein YP_001989275.1 KEGG: bra:BRADO0372 conserved hypothetical protein (partial) YP_001989276.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_001989277.1 KEGG: nha:Nham_3583 hypothetical protein YP_001989278.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001989279.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001989280.1 Essential for efficient processing of 16S rRNA YP_001989281.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001989282.1 KEGG: bbt:BBta_0368 signal recognition particle with 4.5 RNA, ffh family; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_001989283.1 KEGG: sus:Acid_1771 prevent-host-death family protein YP_001989284.1 PFAM: beta-lactamase domain protein; KEGG: bra:BRADO0380 metallo-hydrolase/oxidoreductase YP_001989285.1 PFAM: protein of unknown function DUF541; KEGG: nha:Nham_3577 protein of unknown function DUF541 YP_001989286.1 PFAM: transcription activator effector binding; KEGG: bja:blr0478 hypothetical protein YP_001989287.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_001989288.1 KEGG: bra:BRADO0384 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001989289.1 KEGG: xau:Xaut_1107 hypothetical protein YP_001989290.1 PFAM: protein of unknown function DUF55; KEGG: bja:blr0569 hypothetical protein YP_001989291.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001989292.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001989293.1 PFAM: uroporphyrinogen III synthase HEM4; KEGG: bja:bll0566 uroporphyrinogen III synthase YP_001989294.1 KEGG: nha:Nham_0564 hypothetical protein YP_001989295.1 PFAM: HemY domain protein; KEGG: bja:bll0564 hypothetical protein YP_001989296.1 PFAM: histidine kinase HAMP region domain protein; KEGG: atc:AGR_C_4040 methyl-accepting chemotaxis protein YP_001989297.1 KEGG: mex:Mext_4818 cobalamin B12-binding YP_001989298.1 KEGG: nwi:Nwi_2399 hypothetical protein YP_001989299.1 PFAM: ribulose bisphosphate carboxylase large chain; KEGG: plt:Plut_0412 ribulose-bisphosphate carboxylase YP_001989300.1 PFAM: protein of unknown function UPF0047; KEGG: cph:Cpha266_0672 protein of unknown function UPF0047 YP_001989301.1 PFAM: acyltransferase 3; KEGG: bte:BTH_I1858 acyltransferase family protein YP_001989302.1 KEGG: fps:FP1412 probable sugar O-acetyltransferase precursor YP_001989303.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: mag:amb1065 predicted membrane protein YP_001989304.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: bra:BRADO0321 thioredoxin YP_001989305.1 PFAM: peptidase S16 lon domain protein; KEGG: bja:blr0595 hypothetical protein YP_001989306.1 PFAM: protein of unknown function DUF343; KEGG: nha:Nham_0083 protein of unknown function DUF343 YP_001989307.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: nwi:Nwi_0079 2-octaprenyl-6-methoxyphenyl hydroxylase YP_001989308.1 KEGG: bja:blr0604 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase YP_001989309.1 KEGG: scl:sce3213 hypothetical protein YP_001989310.1 PFAM: regulatory protein TetR; KEGG: sal:Sala_0735 transcriptional regulator, TetR family YP_001989311.1 PFAM: nitrogen regulatory protein P-II; KEGG: bbt:BBta_0295 regulatory protein for nitrogen assimilation, regulates GlnL , GlnE , and AmtB YP_001989312.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: bbt:BBta_0294 ammonium transport protein (Amt family) YP_001989313.1 PFAM: nitrogen regulatory protein P-II; KEGG: bja:blr0612 nitrogen regulatory protein PII YP_001989314.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: bja:blr0613 ammonium transporter YP_001989315.1 PFAM: DNA polymerase beta domain protein region; KEGG: cak:Caul_1178 DNA polymerase beta domain protein region YP_001989316.1 PFAM: protein of unknown function DUF86; KEGG: mrd:Mrad2831_3537 protein of unknown function DUF86 YP_001989317.1 PFAM: aminotransferase class I and II; KEGG: nha:Nham_0089 aminotransferase, class I and II YP_001989318.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: bja:blr0616 cell division protein YP_001989319.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: bbt:BBta_0134 exported protein of unknown function YP_001989320.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bja:blr0618 exodeoxyribonuclease III YP_001989321.1 PFAM: cyclic nucleotide-binding; KEGG: bja:bll0619 hypothetical protein YP_001989322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:bll0620 two-component response regulator YP_001989323.1 KEGG: nha:Nham_0095 hypothetical protein YP_001989324.1 PFAM: alanine racemase domain protein; KEGG: bbt:BBta_0174 exported protein of unknown function YP_001989325.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: bja:blr0624 hypothetical protein YP_001989326.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001989327.1 KEGG: nha:Nham_0099 hypothetical protein YP_001989328.1 required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA YP_001989329.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: nwi:Nwi_0094 ParB-like partition protein YP_001989330.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: nha:Nham_0103 cobyrinic acid a,c-diamide synthase YP_001989331.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_001989332.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001989333.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001989334.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001989335.1 PFAM: conserved hypothetical protein; KEGG: bra:BRADO0198 hypothetical protein YP_001989336.1 PFAM: protein of unknown function DUF299; KEGG: bbt:BBta_0161 hypothetical protein YP_001989337.1 PFAM: Maf family protein; KEGG: bja:blr0638 Maf-like protein YP_001989338.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_001989339.1 KEGG: bja:blr0640 DNA polymerase III epsilon chain; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease YP_001989340.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_001989341.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: bja:blr0642 hypothetical protein YP_001989342.1 PFAM: MltA domain protein; 3D domain protein; KEGG: bbt:BBta_0155 membrane-bound lytic murein transglycosylase YP_001989343.1 PFAM: Smr protein/MutS2; KEGG: bja:blr0644 hypothetical protein YP_001989344.1 heat shock protein involved in degradation of misfolded proteins YP_001989345.1 KEGG: bbt:BBta_0150 hypothetical protein YP_001989346.1 heat shock protein involved in degradation of misfolded proteins YP_001989347.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_001989348.1 KEGG: nha:Nham_0123 hypothetical protein YP_001989349.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001989350.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_001989351.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001989352.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_001989353.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_001989354.1 KEGG: azc:AZC_0076 hemolysin YP_001989355.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bja:bll0659 two-component hybrid sensor and regulator YP_001989356.1 KEGG: bja:bll0661 hypothetical protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase AAA; SMART: ATPase AAA YP_001989358.1 KEGG: bra:BRADO0941 autoinducer (acylhomoserine lactone) synthase YP_001989359.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: bbt:BBta_7112 N-acyl homoserine lactone transcriptional regulator, LuxR-like protein YP_001989360.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_001989361.1 PFAM: protein of unknown function UPF0102; KEGG: bra:BRADO0179 hypothetical protein YP_001989362.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nha:Nham_0147 protein of unknown function UPF0011 YP_001989363.1 KEGG: nha:Nham_0148 extracellular ligand-binding receptor YP_001989364.1 PFAM: helix-turn-helix HxlR type; KEGG: pla:Plav_3490 transcriptional regulator, HxlR family YP_001989365.1 KEGG: pde:Pden_4576 hypothetical protein YP_001989366.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001989367.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_001989368.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_001989369.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_001989370.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_001989371.1 KEGG: bja:bll0679 hypothetical protein YP_001989372.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_001989373.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_001989374.1 SMART: ribosomal RNA adenine methylase transferase; KEGG: bja:blr0681 phospholipid N-methyltransferase YP_001989375.1 PFAM: NADPH-dependent FMN reductase; KEGG: bja:blr0682 oxidoreductase YP_001989376.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_001989377.1 PFAM: protein of unknown function DUF1330; KEGG: bra:BRADO0159 conserved hypothetical protein; dimeric alpha-beta barrel domain YP_001989378.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_001989379.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_001989380.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: bja:bll0687 transcriptional regulatory protein YP_001989381.1 KEGG: bbt:BBta_0200 membrane protein of unknown function YP_001989382.1 KEGG: bra:BRADO0152 endonuclease III DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_001989383.1 PFAM: peptidase S10 serine carboxypeptidase; KEGG: bja:bll5514 hypothetical protein YP_001989384.1 TIGRFAM: magnesium chelatase accessory protein; PFAM: alpha/beta hydrolase fold; KEGG: bbt:BBta_6446 alpha/beta hydrolase, protoporphyrin IX magnesium chelatase BchO-like protein YP_001989385.1 role in sulfur assimilation YP_001989386.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol YP_001989387.1 PFAM: alpha/beta hydrolase fold; KEGG: mbn:Mboo_0148 alpha/beta hydrolase fold YP_001989388.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: ade:Adeh_3442 DNA-cytosine methyltransferase YP_001989389.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: ppw:PputW619_0683 DNA mismatch endonuclease Vsr YP_001989390.1 KEGG: ade:Adeh_3444 hypothetical protein YP_001989391.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001989392.1 KEGG: bra:BRADO0839 hypothetical protein YP_001989393.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: nha:Nham_0439 HPrNtr YP_001989394.1 PFAM: PTS system fructose subfamily IIA component; KEGG: nha:Nham_0440 PTS system fructose subfamily IIA component YP_001989395.1 KEGG: nha:Nham_0441 HPr kinase YP_001989396.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: nha:Nham_0442 periplasmic sensor signal transduction histidine kinase YP_001989397.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:blr8144 two-component response regulator YP_001989398.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bja:bll8143 hypothetical protein YP_001989399.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_001989400.1 KEGG: sbn:Sbal195_0330 RNA binding S1 domain protein YP_001989401.1 KEGG: azo:azo3831 conserved hypothetical secreted protein YP_001989402.1 PFAM: beta-lactamase; KEGG: nha:Nham_0446 beta-lactamase YP_001989403.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mmr:Mmar10_0829 endonuclease/exonuclease/phosphatase YP_001989404.1 PFAM: protein of unknown function DUF81; KEGG: xau:Xaut_2893 protein of unknown function DUF81 YP_001989405.1 PFAM: beta-lactamase domain protein; KEGG: pla:Plav_1618 beta-lactamase domain protein YP_001989406.1 KEGG: bbt:BBta_5525 hypothetical protein YP_001989407.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_001989408.1 KEGG: bja:blr7336 pseudouridine synthase homolog; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001989409.1 KEGG: bja:bll7335 hypothetical protein YP_001989410.1 KEGG: pin:Ping_3328 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein YP_001989411.1 KEGG: mgm:Mmc1_0771 methionine gamma-lyase; TIGRFAM: methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001989412.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: oan:Oant_0505 transcriptional regulator, AsnC family YP_001989413.1 TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: mlo:mll6589 thioredoxin YP_001989414.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr6070 alcohol dehydrogenase YP_001989415.1 PFAM: ChaB family protein; KEGG: tcx:Tcr_2071 ChaB YP_001989416.1 KEGG: nha:Nham_1929 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_001989417.1 PFAM: UspA domain protein; KEGG: nha:Nham_1926 UspA YP_001989418.1 PFAM: glycoside hydrolase family 4; KEGG: bra:BRADO2867 alpha-galactosidase (melibiase) YP_001989419.1 KEGG: bbt:BBta_6479 carbohydrate kinase PfkB family; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein YP_001989420.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: bbt:BBta_3664 oxidoreductase alpha (molybdopterin) subunit YP_001989421.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_001989422.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_001989423.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001989424.1 PFAM: protein of unknown function DUF1566; KEGG: pat:Patl_3291 protein of unknown function DUF1566 YP_001989425.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_001989426.1 KEGG: bbt:BBta_5458 hypothetical protein YP_001989427.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: nha:Nham_0450 hypothetical protein YP_001989428.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: nha:Nham_0431 methionine aminopeptidase, type I YP_001989429.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_001989430.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm YP_001989431.1 KEGG: bja:bll8156 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001989432.1 PFAM: Alkaline phosphatase; KEGG: rru:Rru_A1289 alkaline phosphatase YP_001989433.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis YP_001989434.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: nwi:Nwi_2804 phosphoesterase, PA-phosphatase related YP_001989435.1 KEGG: bra:BRADO0245 hypothetical protein YP_001989436.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: pfl:PFL_2689 metal-dependent phosphohydrolase YP_001989437.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: radical SAM domain protein; KEGG: bbt:BBta_0241 pyruvate formate lyase activating enzyme 2 (YfgB) YP_001989438.1 KEGG: bja:bll0526 hypothetical protein YP_001989439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll0527 hypothetical oxidoreductase YP_001989440.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_0243 quinone oxidoreductase (NADPH) and Zn-dependent alcohol dehydrogenase YP_001989441.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bbt:BBta_7528 phytoene dehydrogenase and related proteins YP_001989442.1 PFAM: regulatory protein TetR; KEGG: ade:Adeh_2875 transcriptional regulator, TetR family YP_001989443.1 PFAM: protein of unknown function DUF1232; KEGG: bja:bll0531 hypothetical protein YP_001989444.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_001989445.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bja:blr0533 hypothetical protein YP_001989446.1 PFAM: PepSY-associated TM helix domain protein; KEGG: azc:AZC_2703 hypothetical protein YP_001989447.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azc:AZC_2702 TonB-dependent siderophore receptor YP_001989448.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: bra:BRADO0265 GTP-binding protein TypA/BipA (tyrosine phosphorylated protein A) YP_001989449.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bja:blr0541 hypothetical protein YP_001989450.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr0547 hypothetical protein YP_001989451.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_001989452.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bra:BRADO0276 hypothetical protein YP_001989453.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_001989454.1 PFAM: protein of unknown function DUF167; KEGG: nwi:Nwi_0479 hypothetical protein YP_001989455.1 PFAM: protein of unknown function YGGT; KEGG: nwi:Nwi_0478 protein of unknown function YGGT YP_001989456.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001989457.1 KEGG: vei:Veis_3840 protein of unknown function DUF1486 YP_001989458.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_001989459.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nha:Nham_0606 short-chain dehydrogenase/reductase SDR YP_001989460.1 PFAM: protein of unknown function DUF1332; KEGG: bbt:BBta_0275 hypothetical protein YP_001989461.1 PFAM: cytochrome P450; KEGG: bbt:BBta_0276 cytochrome P450 hydroxylase superfamily protein YP_001989462.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bja:bll0766 2-hydroxyacid dehydrogenase YP_001989463.1 PFAM: protein of unknown function DUF1058; KEGG: nha:Nham_0044 protein of unknown function DUF1058 YP_001989464.1 PFAM: ferric-uptake regulator; KEGG: nwi:Nwi_0035 ferric-uptake regulator YP_001989465.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_001989466.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_001989467.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_001989468.1 KEGG: oan:Oant_3604 hypothetical protein YP_001989469.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: mes:Meso_0626 catalase/peroxidase HPI YP_001989470.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nwi:Nwi_0029 regulatory protein, LysR YP_001989471.1 KEGG: bbt:BBta_2308 methyl-accepting chemotaxis receptor/sensory transducer with PAS domain; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001989472.1 KEGG: nwi:Nwi_0028 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein YP_001989473.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001989474.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_001989475.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_001989476.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_001989477.1 PFAM: protein of unknown function DUF448; KEGG: nwi:Nwi_0023 hypothetical protein YP_001989478.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001989479.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_001989480.1 KEGG: bja:blr0787 hypothetical protein YP_001989481.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: pla:Plav_0212 phytanoyl-CoA dioxygenase YP_001989482.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_001989483.1 PFAM: helix-turn-helix domain protein; KEGG: nha:Nham_0026 transcriptional regulator, XRE family YP_001989484.1 Transfers the fatty acyl group on membrane lipoproteins YP_001989485.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: bja:bll0792 magnesium and cobalt efflux protein YP_001989486.1 PFAM: protein of unknown function UPF0054; KEGG: nha:Nham_0023 protein of unknown function UPF0054 YP_001989487.1 PFAM: PhoH family protein; KH type 1 domain protein; KEGG: bbt:BBta_0047 phosphate starvation-inducible protein, PhoH-like protein YP_001989488.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_001989489.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:bll0796 hypothetical protein YP_001989490.1 PFAM: ferric-uptake regulator; KEGG: nha:Nham_0020 ferric uptake regulator, FUR family YP_001989491.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: bja:bll0798 acetyltransferase YP_001989492.1 PFAM: peptidase M22 glycoprotease; KEGG: nha:Nham_0018 peptidase M22, glycoprotease YP_001989493.1 PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU; KEGG: bbt:BBta_0040 NifU protein YP_001989494.1 KEGG: nha:Nham_0015 UspA YP_001989495.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001989496.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: bja:bll0803 virulence factor YP_001989497.1 PFAM: PfkB domain protein; KEGG: nwi:Nwi_0218 PfkB YP_001989498.1 PFAM: AMP-dependent synthetase and ligase; KEGG: azo:azo3066 acyl-CoA synthetase YP_001989499.1 PFAM: beta-lactamase; KEGG: bja:bll0805 hypothetical protein YP_001989500.1 KEGG: bja:blr0806 hypothetical protein YP_001989501.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bra:BRADO0028 succinate-semialdehyde dehydrogenase [NADP+] (SSDH) YP_001989502.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: rle:RL1126 hypothetical protein YP_001989503.1 KEGG: bja:bll0087 hypothetical protein YP_001989504.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: nha:Nham_0428 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_001989505.1 PFAM: ABC transporter inner membrane protein; KEGG: nha:Nham_0427 ABC transporter inner membrane protein YP_001989506.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_7481 ABC transporter ATP-binding protein YP_001989507.1 PFAM: NMT1/THI5 like domain protein; KEGG: nha:Nham_0425 perplasmic binding protein of ABC transporter YP_001989508.1 PFAM: Creatininase; KEGG: nha:Nham_0424 creatininase YP_001989509.1 PFAM: carbohydrate-selective porin OprB; KEGG: bja:blr0095 hypothetical protein YP_001989510.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: nha:Nham_0422 ferredoxin-dependent glutamate synthase YP_001989511.1 KEGG: bja:blr0101 hypothetical protein YP_001989512.1 KEGG: bbt:BBta_7591 hypothetical protein YP_001989513.1 PFAM: protein of unknown function DUF937; KEGG: nha:Nham_0511 protein of unknown function DUF937 YP_001989514.1 KEGG: nha:Nham_0510 transglycosylase-associated protein YP_001989515.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: bja:bll0137 hypothetical oxidoreductase YP_001989516.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:blr0138 hypothetical protein YP_001989517.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:blr0139 acyl-CoA dehydrogenase YP_001989518.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr0140 enoyl-CoA hydratase YP_001989519.1 KEGG: bja:bll0142 hypothetical protein YP_001989520.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001989521.1 KEGG: bja:bll0144 substrate-binding protein YP_001989522.1 PFAM: nuclease (SNase domain protein); KEGG: nha:Nham_0509 nuclease (SNase-like) YP_001989523.1 PFAM: peptidase M48 Ste24p; KEGG: nha:Nham_0508 peptidase M48, Ste24p YP_001989524.1 PFAM: transcription factor CarD; KEGG: bja:bll0156 probable transcriptional regulator YP_001989525.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bja:bll0157 ferredoxin YP_001989526.1 PFAM: RNA-binding S4 domain protein; KEGG: nha:Nham_0505 RNA-binding S4 YP_001989527.1 PFAM: helicase domain protein; KEGG: nha:Nham_0504 helicase-like YP_001989528.1 KEGG: nha:Nham_0503 hypothetical protein YP_001989529.1 required for 70S ribosome assembly YP_001989530.1 KEGG: bbt:BBta_0531 sensor histidine kinase with HAMP, PAS and response regulator receiver domains; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001989531.1 KEGG: nha:Nham_0500 hypothetical protein YP_001989532.1 KEGG: bbt:BBta_7564 aerobic cobaltochelatase CobT subunit (cobalamin biosynthesis); TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit; SMART: von Willebrand factor type A YP_001989533.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bja:bll0179 acetyltransferase YP_001989534.1 KEGG: bja:bll0180 cobalt insertion protein; TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase AAA YP_001989535.1 PFAM: SNARE associated Golgi protein; KEGG: bja:blr0181 hypothetical protein YP_001989536.1 PFAM: heat shock protein DnaJ domain protein; KEGG: nha:Nham_0496 heat shock protein DnaJ-like YP_001989537.1 PFAM: BolA family protein; KEGG: bja:bsr0185 hypothetical protein YP_001989538.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: nha:Nham_0492 protein of unknown function DUF21 YP_001989539.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_001989540.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_001989541.1 KEGG: bja:bsr0189 hypothetical protein YP_001989542.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: nha:Nham_0488 tyrosine recombinase XerD YP_001989543.1 PFAM: cytochrome B561; KEGG: bbt:BBta_5356 cytochrome b561 YP_001989544.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_001989545.1 PFAM: protein of unknown function DUF949; KEGG: bbt:BBta_7577 exported protein of unknown function with transcriptiona regulatory protein domain (C-term) YP_001989546.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_001989547.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bja:blr0205 hypothetical protein YP_001989548.1 This protein performs the mismatch recognition step during the DNA repair process YP_001989549.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_001989550.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_7638 drug resistance transporter EmrB-FarB-QacA family YP_001989551.1 PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO0542 efflux pump protein (HlyD domain), EmrA-FarA family YP_001989552.1 PFAM: regulatory protein MarR; KEGG: bja:bll0933 transcriptional regulatory protein YP_001989553.1 PFAM: ferric-uptake regulator; KEGG: nha:Nham_0618 ferric uptake regulator, FUR family YP_001989554.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr0935 hypothetical protein YP_001989555.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_001989556.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: bja:bll0940 Na(+)/H(+) exchanger YP_001989557.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: mrd:Mrad2831_4412 diguanylate cyclase/phosphodiesterase YP_001989558.1 PFAM: BLUF domain protein; KEGG: mex:Mext_4031 BLUF domain protein YP_001989559.1 PFAM: protein of unknown function DUF1345; KEGG: nha:Nham_0622 protein of unknown function DUF1345 YP_001989560.1 PFAM: polyprenyl synthetase; KEGG: nha:Nham_0623 polyprenyl synthetase YP_001989561.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan YP_001989562.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001989563.1 KEGG: bra:BRADO0558 hypothetical protein YP_001989565.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bja:blr0951 hypothetical protein YP_001989566.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: bbt:BBta_7615 polyhydroxyalkanoate synthesis repressor PhaR-like protein YP_001989567.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_001989568.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nha:Nham_3689 acetoacetyl-CoA reductase YP_001989569.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bra:BRADO0564 conserved hypothetical protein; transmembrane protein YP_001989570.1 KEGG: bra:BRADO0756 conserved hypothetical protein; signal peptide; protease YP_001989571.1 KEGG: bbt:BBta_7352 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases YP_001989572.1 PFAM: acyltransferase 3; KEGG: nwi:Nwi_0358 acyltransferase 3 YP_001989573.1 KEGG: azo:azo3307 probable coenzyme A transferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase YP_001989574.1 PFAM: porin; KEGG: bbt:BBta_3063 exported protein of unknown function with porin precursor domain YP_001989575.1 PFAM: regulatory protein MarR; KEGG: bja:blr4984 transcriptional regulatory protein YP_001989576.1 KEGG: bja:bll4985 hypothetical protein YP_001989577.1 KEGG: nha:Nham_3497 disulphide bond formation protein DsbB YP_001989578.1 TIGRFAM: membrane protein AbrB duplication; PFAM: ammonia monooxygenase; KEGG: bja:bll1341 hypothetical protein YP_001989579.1 KEGG: bra:BRADO6543 conserved hypothetical protein; signal peptide YP_001989580.1 PFAM: LrgA family protein; KEGG: bja:blr1347 hypothetical protein YP_001989581.1 PFAM: LrgB family protein; KEGG: bja:blr1348 hypothetical protein YP_001989582.1 KEGG: mrd:Mrad2831_1254 hypothetical protein YP_001989583.1 PFAM: phospholipase/carboxylesterase; KEGG: bra:BRADO6537 hypothetical protein YP_001989584.1 PFAM: protein of unknown function UPF0118; KEGG: bbt:BBta_2998 membrane protein of unknown function YP_001989585.1 TIGRFAM: anti-sigma factor, , ChrR family; KEGG: rle:pRL120581 transcriptional regulator YP_001989586.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_001989588.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mrd:Mrad2831_3013 transcriptional regulator, LysR family YP_001989589.1 involved in the transport of C4-dicarboxylates across the membrane YP_001989590.1 TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; cupin; KEGG: mrd:Mrad2831_3011 allantoin catabolism protein YP_001989591.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_001989592.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: dac:Daci_2653 methyltransferase type 11 YP_001989593.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: bja:bll1367 hypothetical protein YP_001989594.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bja:bll4682 cysteine synthase YP_001989595.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001989596.1 PFAM: pirin; KEGG: bbt:BBta_0019 pirin family protein YP_001989597.1 PFAM: Malonyl-CoA decarboxylase; KEGG: pde:Pden_1720 malonyl-CoA decarboxylase YP_001989598.1 PFAM: PAS fold-4 domain protein; KEGG: sma:SAV698 magnesium or manganese-dependent protein phosphatase YP_001989599.1 PFAM: MmgE/PrpD family protein; KEGG: bja:bll0816 hypothetical protein YP_001989600.1 KEGG: nha:Nham_0005 hypothetical protein YP_001989601.1 KEGG: mxa:MXAN_4080 hypothetical protein YP_001989603.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: bja:blr0899 poly(3-hydroxyalkanoate) depolymerase YP_001989604.1 PFAM: protein of unknown function DUF1236; KEGG: nha:Nham_0234 hypothetical protein YP_001989605.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bja:blr7666 transcriptional regulatory protein YP_001989606.1 PFAM: beta-lactamase domain protein; KEGG: bbt:BBta_7673 enzyme with metallo-hydrolase/oxidoreductase domain YP_001989607.1 PFAM: von Willebrand factor type A; KEGG: hch:HCH_00942 protein containing VWFA domain YP_001989608.1 PFAM: protein of unknown function DUF1052; KEGG: bra:BRADO0513 hypothetical protein YP_001989609.1 PFAM: response regulator receiver; KEGG: bja:bll0904 two-component response regulator YP_001989610.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nha:Nham_0230 periplasmic sensor signal transduction histidine kinase YP_001989611.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr0906 nodulation ATP-binding protein I YP_001989612.1 PFAM: ABC transporter; KEGG: bbt:BBta_7657 ABC transporter permease protein YP_001989613.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: bja:blr0908 hypothetical protein YP_001989614.1 PFAM: protein of unknown function DUF45; KEGG: bja:blr0909 hypothetical protein YP_001989615.1 KEGG: nha:Nham_0227 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001989618.1 PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO0527 branched-chain amino acid ABC transporter periplasmic binding protein YP_001989619.1 PFAM: protein of unknown function DUF1304; KEGG: bja:bll0914 hypothetical protein YP_001989620.1 KEGG: bja:blr0911 hypothetical protein YP_001989621.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bbt:BBta_4235 sensor histidine kinase with a CHASE3 and a response regulator receiver domain YP_001989622.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: bra:BRADO0672 transcriptional accessory protein containing S1 RNA-binding domain YP_001989623.1 TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: nha:Nham_1938 chromate transporter YP_001989624.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hau:Haur_5203 short-chain dehydrogenase/reductase SDR YP_001989625.1 PFAM: amino acid permease-associated region; KEGG: gvi:gll1666 probable amino acid transporter YP_001989626.1 PFAM: regulatory protein TetR; KEGG: rme:Rmet_3816 transcriptional regulator, TetR family YP_001989627.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rfr:Rfer_0523 acyl-CoA dehydrogenase-like YP_001989628.1 KEGG: mag:amb0303 periplasmic protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001989629.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_001989630.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_001989631.1 KEGG: bbt:BBta_0762 exported protein of unknown function YP_001989632.1 PFAM: NUDIX hydrolase; KEGG: bbt:BBta_7592 mutator protein MutT YP_001989633.1 PFAM: Integrase catalytic region; KEGG: sme:SMc04250 transposase protein YP_001989634.1 PFAM: methyltransferase type 11; KEGG: bja:bll0208 methyltransferase YP_001989635.1 KEGG: bbt:BBta_7253 hypothetical protein YP_001989636.1 PFAM: phosphoribosyltransferase; KEGG: nha:Nham_0480 phosphoribosyltransferase YP_001989637.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: bra:BRADO0582 glutaredoxin 3 YP_001989638.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bbt:BBta_7596 nitrilase YP_001989639.1 PFAM: protein of unknown function DUF1178; KEGG: bja:blr0212 hypothetical protein YP_001989640.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: nha:Nham_0476 protein of unknown function DUF6, transmembrane YP_001989641.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: nha:Nham_0475 hypothetical protein YP_001989642.1 Involved in ubiquinone biosynthesis YP_001989643.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_001989644.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: bja:blr0217 phosphoenolpyruvate-protein phosphotransferase YP_001989645.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001989646.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; methyltransferase type 11; KEGG: nha:Nham_0469 modification methylase, HemK family YP_001989647.1 KEGG: nha:Nham_0468 hypothetical protein YP_001989648.1 PFAM: methyltransferase type 11; KEGG: bja:bll0221 hypothetical protein YP_001989649.1 KEGG: nha:Nham_0466 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein YP_001989650.1 PFAM: protein of unknown function DUF985; KEGG: bja:blr0223 hypothetical protein YP_001989651.1 PFAM: PfkB domain protein; KEGG: nha:Nham_0460 PfkB YP_001989652.1 PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: bja:blr8123 MutT/NUDIX family protein YP_001989653.1 PFAM: histidine triad (HIT) protein; KEGG: bja:blr8122 hypothetical protein YP_001989654.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_001989655.1 PFAM: conserved hypothetical protein; KEGG: nha:Nham_0463 conserved hypothetical protein 103 YP_001989656.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001989657.1 KEGG: bja:bll8113 hypothetical protein YP_001989658.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr8112 hypothetical protein YP_001989659.1 PFAM: protein of unknown function DUF195; KEGG: bbt:BBta_7338 hypothetical protein YP_001989660.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001989661.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_001989662.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001989663.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_001989664.1 PFAM: protein of unknown function DUF805; KEGG: bja:blr8105 hypothetical protein YP_001989665.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_001989666.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nha:Nham_3699 pyrimidine 5-nucleotidase YP_001989667.1 KEGG: bja:blr8102 hypothetical protein YP_001989668.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_001989669.1 PFAM: protein of unknown function DUF423; KEGG: bbt:BBta_7328 membrane protein of unknown function YP_001989670.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001989671.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_001989672.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: nha:Nham_3704 ribonuclease P protein component YP_001989673.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_001989674.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nha:Nham_3706 histidine kinase YP_001989675.1 KEGG: tfu:Tfu_0999 hypothetical protein YP_001989676.1 PFAM: peptidase S24 and S26 domain protein; KEGG: sbn:Sbal195_2114 phage repressor YP_001989677.1 KEGG: azc:AZC_2125 transcriptional regulator YP_001989679.1 SMART: ParB domain protein nuclease; KEGG: xau:Xaut_4529 ParB domain protein nuclease YP_001989680.1 KEGG: azc:AZC_2127 hypothetical protein YP_001989681.1 PFAM: Integrase catalytic region; Transposase-like Mu; KEGG: azc:AZC_2128 transposase protein A YP_001989682.1 KEGG: azc:AZC_2129 transposase protein B YP_001989683.1 KEGG: azc:AZC_2130 hypothetical protein YP_001989684.1 KEGG: azc:AZC_2131 hypothetical protein YP_001989685.1 PFAM: Chromosomal replication initiator DnaA domain; KEGG: azc:AZC_2132 chromosomal replication initiator protein YP_001989687.1 KEGG: azc:AZC_2133 hypothetical protein YP_001989689.1 KEGG: aav:Aave_2922 hypothetical protein YP_001989692.1 KEGG: mag:amb0461 hypothetical protein YP_001989693.1 KEGG: azc:AZC_2134 Mu-like prophage protein GP16 YP_001989695.1 KEGG: rsq:Rsph17025_2113 hypothetical protein YP_001989696.1 KEGG: azc:AZC_2135 hypothetical protein YP_001989697.1 PFAM: peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: rsq:Rsph17025_2109 N-acetylmuramoyl-L-alanine amidase, family 2 YP_001989699.1 KEGG: ade:Adeh_0433 exonuclease SbcC YP_001989701.1 TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger DksA/TraR C4-type; KEGG: cvi:CV_0352 hypothetical protein YP_001989702.1 KEGG: xau:Xaut_4506 hypothetical protein YP_001989703.1 KEGG: xau:Xaut_4505 hypothetical protein YP_001989704.1 KEGG: xau:Xaut_4504 Mu-like prophage FluMu protein GP27 YP_001989705.1 PFAM: protein of unknown function DUF264; KEGG: xau:Xaut_4503 protein of unknown function DUF264 YP_001989706.1 PFAM: protein of unknown function DUF935; KEGG: azc:AZC_2143 Mu-like prophage protein GP29 YP_001989707.1 PFAM: head morphogenesis protein SPP1 gp7; KEGG: azc:AZC_2144 phage Mu protein F like protein YP_001989708.1 KEGG: azc:AZC_2147 prophage MuSo2 protein YP_001989709.1 KEGG: pol:Bpro_3746 hypothetical protein YP_001989710.1 KEGG: btr:Btr_2623 hypothetical protein YP_001989711.1 KEGG: swd:Swoo_3561 translation initiation factor IF-2 YP_001989714.1 KEGG: azc:AZC_2151 hypothetical protein YP_001989715.1 TIGRFAM: phage virion morphogenesis protein; KEGG: azc:AZC_2152 prophage MuSo2 YP_001989716.1 KEGG: azc:AZC_2153 hypothetical protein YP_001989717.1 KEGG: azc:AZC_2154 phage baseplate assembly protein V YP_001989719.1 KEGG: azc:AZC_2156 phage GP25 protein YP_001989720.1 PFAM: Baseplate J family protein; KEGG: nha:Nham_3331 baseplate J-like protein YP_001989721.1 TIGRFAM: phage tail protein I; PFAM: ATP-dependent DNA ligase, conserved site; KEGG: nha:Nham_3330 phage tail protein I YP_001989722.1 KEGG: nha:Nham_3329 hypothetical protein YP_001989724.1 KEGG: btr:Btr_2267 hypothetical protein YP_001989725.1 KEGG: nha:Nham_2379 hypothetical protein YP_001989726.1 KEGG: oan:Oant_1491 hypothetical protein YP_001989727.1 KEGG: btr:Btr_2610 hypothetical protein YP_001989728.1 KEGG: azc:AZC_2164 hypothetical protein YP_001989730.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: azc:AZC_2165 phage-related tail protein YP_001989731.1 KEGG: btr:Btr_2606 phage tail protein YP_001989732.1 PFAM: tail X family protein; KEGG: nha:Nham_3320 phage tail X YP_001989733.1 PFAM: late control D family protein; KEGG: btr:Btr_1650 hypothetical protein YP_001989734.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: nha:Nham_0534 rare lipoprotein A YP_001989736.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: azc:AZC_2169 site-specific DNA-methyltransferase YP_001989738.1 KEGG: bja:bll3690 hypothetical protein YP_001989739.1 KEGG: bja:bll3691 hypothetical protein YP_001989740.1 KEGG: bja:bll3692 hypothetical protein YP_001989741.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001989742.1 PFAM: flagellin domain protein; KEGG: bja:blr3695 probable flagellin YP_001989743.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: bbt:BBta_3160 flagellar hook-associated protein 2 (HAP2, FliD protein) YP_001989744.1 KEGG: bbt:BBta_3161 flagellar protein FliS YP_001989745.1 KEGG: bja:blr3698 hypothetical protein YP_001989746.1 PFAM: flagellar hook capping protein; KEGG: bbt:BBta_3164 basal-body rod modification protein FlgD YP_001989747.1 the hook connects flagellar basal body to the flagellar filament YP_001989748.1 KEGG: bra:BRADO4883 hypothetical protein YP_001989749.1 KEGG: bbt:BBta_3167 hypothetical protein YP_001989750.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; flagellin hook IN repeat protein; protein of unknown function DUF1078 domain protein; KEGG: bja:blr3703 probable flagellar hook-associated protein YP_001989751.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook YP_001989752.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pna:Pnap_2128 enoyl-CoA hydratase/isomerase YP_001989753.1 AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate YP_001989754.1 TIGRFAM: cyclohexanecarboxyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: reu:Reut_B3917 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal YP_001989755.1 TIGRFAM: 2-ketocyclohexanecarboxyl-CoA hydrolase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pna:Pnap_2124 naphthoate synthase YP_001989756.1 TIGRFAM: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2123 short-chain dehydrogenase/reductase SDR YP_001989757.1 PFAM: regulatory protein MarR; KEGG: reu:Reut_B3914 transcriptional regulator, MarR family YP_001989758.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_2134 alcohol dehydrogenase, zinc-binding domain protein YP_001989759.1 TIGRFAM: benzoyl-CoA reductase, subunit C; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: mag:amb2141 C-subunit of benzoyl-CoA reductase YP_001989760.1 TIGRFAM: benzoyl-CoA reductase, subunit B; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: mag:amb2140 B-subunit of benzoyl-CoA reductase YP_001989761.1 TIGRFAM: CoA-substrate-specific enzyme activase; benzoyl-CoA reductase, subunit A; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: mag:amb2139 activator of 2-hydroxyglutaryl-CoA dehydratase YP_001989762.1 TIGRFAM: CoA-substrate-specific enzyme activase; benzoyl-CoA reductase, subunit D; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: mag:amb2138 D-subunit of benzoyl-CoA reductase YP_001989763.1 TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_0216 benzoate-CoA ligase family YP_001989764.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mms:mma_3134 ferredoxin YP_001989765.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; hypothetical protein; KEGG: mag:amb3391 predicted transcriptional regulator YP_001989766.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gme:Gmet_2096 GCN5-related N-acetyltransferase YP_001989767.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mag:amb2870 ABC-type branched-chain amino acid transport systems, ATPase component YP_001989768.1 PFAM: inner-membrane translocator; ABC transporter; SMART: ATPase AAA; KEGG: xau:Xaut_2704 ABC transporter YP_001989769.1 PFAM: inner-membrane translocator; KEGG: pna:Pnap_1906 inner-membrane translocator YP_001989770.1 PFAM: extracellular ligand-binding receptor; KEGG: dar:Daro_2772 extracellular ligand-binding receptor YP_001989771.1 TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr1077 acetyl-CoA synthetase YP_001989772.1 TIGRFAM: 4-hydroxybenzoyl-CoA reductase, gamma subunit; PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: eba:ebA3604 4-hydroxybenzoyl-CoA reductase, gamma subunit YP_001989773.1 TIGRFAM: 4-hydroxybenzoyl-CoA reductase, alpha subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: eba:ebA3603 4-hydroxybenzoyl-CoA reductase, alpha subunit YP_001989774.1 TIGRFAM: 4-hydroxybenzoyl-CoA reductase, beta subunit; PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: eba:ebA3602 4-hydroxybenzoyl-CoA reductase, beta subunit YP_001989775.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: sil:SPOA0323 cyclic nucleotide-binding protein YP_001989776.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_3153 alcohol dehydrogenase, zinc-binding protein YP_001989777.1 PFAM: alpha/beta hydrolase fold; KEGG: bbt:BBta_0748 hydrolase (alpha/beta hydrolase superfamily) YP_001989778.1 cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA YP_001989779.1 TIGRFAM: benzoyl-CoA oxygenase, B subunit; KEGG: bja:blr1081 probable benzoyl-CoA oxygenase component YP_001989780.1 TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: ade:Adeh_2791 trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein YP_001989781.1 PFAM: radical SAM domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bra:BRADO0847 conserved hypothetical protein; radical SAM domain YP_001989782.1 KEGG: fre:Franean1_3028 transcriptional regulator, TetR family YP_001989783.1 PFAM: secretion protein HlyD family protein; KEGG: rle:pRL90043 transmembrane transport protein YP_001989784.1 PFAM: ABC transporter; ABC transporter; SMART: ATPase AAA; KEGG: mex:Mext_0565 ABC transporter YP_001989785.1 PFAM: ABC transporter; KEGG: sil:SPO0109 hypothetical protein YP_001989786.1 KEGG: bbt:BBta_4009 hypothetical protein YP_001989787.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bja:blr5288 transcriptional regulatory protein YP_001989788.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bra:BRADO5348 hypothetical protein YP_001989789.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: bja:blr1228 guanylate kinase YP_001989790.1 TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bja:blr1227 phosphonate metabolism protein YP_001989791.1 KEGG: bja:blr1226 phosphonate uptake transporter ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter; SMART: ATPase AAA YP_001989792.1 KEGG: bra:BRADO5352 phosphonates transport ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter; SMART: ATPase AAA YP_001989793.1 PFAM: phosphonate metabolism PhnJ; KEGG: bbt:BBta_5845 PhnJ protein, phosphonate metabolism YP_001989794.1 PFAM: phosphonate metabolism; KEGG: bja:blr1223 phosphonate metabolism protein YP_001989795.1 TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: bja:blr1222 carbon-phosphorus lyase complex subunit YP_001989796.1 TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; KEGG: bja:blr1221 phosphonate metabolism protein YP_001989797.1 TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bbt:BBta_5849 transcriptional regulator, GntR family, with an UbiC transcription regulator-associated domain YP_001989799.1 TIGRFAM: phosphonate ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO5363 PhnE protein, phosphonate ABC transporter membrane protein YP_001989800.1 TIGRFAM: phosphonate ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: xau:Xaut_1320 phosphonate ABC transporter inner membrane subunit YP_001989801.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate binding protein; KEGG: xau:Xaut_1321 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_001989802.1 KEGG: bja:bll7947 phosphonates transport system nucleotide binding/ATPase protein; TIGRFAM: phosphonate ABC transporter ATPase subunit; PFAM: ABC transporter; SMART: ATPase AAA YP_001989803.1 TIGRFAM: phosphonate metabolim protein, transferase hexapeptide repeat family; KEGG: bbt:BBta_5859 acetyltransferase YP_001989804.1 TIGRFAM: phosphonate metabolism protein PhnM; PFAM: Amidohydrolase 3; KEGG: bja:blr7949 phosphonate metabolism protein YP_001989805.1 TIGRFAM: phosphonate metabolism protein; PFAM: protein of unknown function DUF1045; KEGG: bja:blr7950 hypothetical protein YP_001989806.1 KEGG: mpt:Mpe_A3544 hypothetical protein YP_001989808.1 KEGG: ecp:ECP_1925 hypothetical protein YP_001989809.1 PFAM: protein of unknown function DUF123; KEGG: rru:Rru_A0067 protein of unknown function DUF123 YP_001989810.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: cte:CT1607 periplasmic divalent cation tolerance protein CutA YP_001989811.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: aba:Acid345_1009 hypothetical protein YP_001989812.1 KEGG: osa:4324453 hypothetical protein YP_001989813.1 PFAM: PEBP family protein; KEGG: lbl:LBL_0708 phospholipid binding protein YP_001989815.1 KEGG: bbt:BBta_3155 Cob(II)yrinic acid a,c-diamide reductase, BluB; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase YP_001989816.1 KEGG: cak:Caul_2742 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_001989817.1 PFAM: protein of unknown function DUF1636; KEGG: mrd:Mrad2831_3113 protein of unknown function DUF1636 YP_001989818.1 PFAM: cobalbumin biosynthesis protein; KEGG: mag:amb4425 adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase YP_001989819.1 TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mrd:Mrad2831_3114 cobalamin biosynthesis protein CobW YP_001989820.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism YP_001989821.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_001989822.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_001989823.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: sme:SMc04279 probable cobalamin biosynthesis transmembrane protein YP_001989824.1 PFAM: periplasmic binding protein; KEGG: nha:Nham_3728 periplasmic binding protein YP_001989825.1 TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: bcs:BCAN_A1318 threonine-phosphate decarboxylase YP_001989826.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nwi:Nwi_3049 ABC transporter ATPase subunit YP_001989827.1 PFAM: transport system permease protein; KEGG: nha:Nham_3730 transport system permease protein YP_001989828.1 TIGRFAM: high-affinity nickel-transporter; KEGG: bmv:BMASAVP1_A1617 high-affinity nickel transport protein YP_001989829.1 PFAM: small multidrug resistance protein; KEGG: bra:BRADO5344 quaternary ammonium compound-resistance protein SugE (SMR family) YP_001989830.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mlo:mlr1575 hypothetical protein YP_001989831.1 KEGG: rsh:Rsph17029_2515 S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase YP_001989832.1 KEGG: bja:blr3941 hypothetical protein YP_001989833.1 PFAM: TadE family protein; KEGG: bja:blr3942 hypothetical protein YP_001989834.1 KEGG: bja:blr3943 hypothetical protein YP_001989835.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_3092 transcriptional regulatory protein, LysR family YP_001989836.1 catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor YP_001989837.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: bja:bll3137 NADH dehydrogenase I chain F YP_001989838.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: bja:bll3136 formate dehydrogenase alpha subunit YP_001989839.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_001989840.1 KEGG: bja:bsl3134 NAD-dependent formate dehydrogenase YP_001989841.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr2314 MFS permease YP_001989842.1 KEGG: bra:BRADO0326 glucose/sorbosone dehydrogenase YP_001989843.1 KEGG: bra:BRADO0327 cytochrome C4 precursor YP_001989844.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mxa:MXAN_3760 acyl-CoA dehydrogenase YP_001989845.1 SMART: ATPase AAA; KEGG: bja:blr6138 hypothetical protein YP_001989846.1 PFAM: VWA containing CoxE family protein; KEGG: bja:blr6139 hypothetical protein YP_001989847.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bbt:BBta_0667 O-succinylbenzoate--CoA ligase YP_001989848.1 KEGG: rso:RSc2290 probable iron oxidase precursor oxidoreductase protein YP_001989849.1 KEGG: gur:Gura_3627 hypothetical protein YP_001989850.1 TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: dar:Daro_1402 Doubled CXXCH motif YP_001989851.1 KEGG: nwi:Nwi_2757 sulphate transport system permease protein 1; TIGRFAM: sulfate ABC transporter ATPase subunit; PFAM: ABC transporter; SMART: ATPase AAA YP_001989852.1 TIGRFAM: sulfate ABC transporter inner membrane subunit; sulfate ABC transporter inner membrane subunit CysW; PFAM: ABC transporter inner membrane protein; KEGG: bja:blr1484 sulfate ABC transporter permease protein YP_001989853.1 TIGRFAM: sulfate ABC transporter inner membrane subunit; sulfate ABC transporter inner membrane subunit CysT; PFAM: ABC transporter inner membrane protein; KEGG: nha:Nham_3559 sulfate ABC transporter permease protein CysT YP_001989854.1 TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bbt:BBta_6977 sulfate transport protein (ABC superfamily, peri_bind) YP_001989855.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_001989856.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_001989857.1 KEGG: nwi:Nwi_2764 adenylylsulfate kinase; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; adenylylsulfate kinase; elongation factor Tu domain 2 protein YP_001989858.1 KEGG: nar:Saro_2666 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001989859.1 KEGG: bja:bll7916 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA YP_001989860.1 PFAM: Amidase; KEGG: bja:bll7917 glutamyl-tRNA(Gln) amidotransferase YP_001989861.1 KEGG: bbt:BBta_7146 hypothetical protein YP_001989862.1 KEGG: bja:bll7918 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA YP_001989863.1 PFAM: ABC transporter inner membrane protein; KEGG: azc:AZC_1552 ABC transporter permease protein YP_001989864.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:bll7920 ABC transporter permease protein YP_001989865.1 PFAM: extracellular solute-binding protein family 5; KEGG: bja:bll7921 ABC transporter substrate-binding protein YP_001989866.1 PFAM: extracellular solute-binding protein family 5; KEGG: bja:blr7922 ABC transporter substrate-binding protein YP_001989867.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rsq:Rsph17025_3983 hypothetical protein YP_001989868.1 KEGG: sil:SPO0636 EF hand domain protein YP_001989869.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: neu:NE1205 TonB-dependent receptor protein YP_001989870.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: smd:Smed_6276 transcriptional regulator, Crp/Fnr family YP_001989871.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: mlo:mll2240 hypothetical protein YP_001989872.1 KEGG: psb:Psyr_3809 hypothetical protein YP_001989873.1 KEGG: psb:Psyr_3808 hypothetical protein YP_001989874.1 KEGG: psb:Psyr_3807 hypothetical protein YP_001989875.1 PFAM: protein of unknown function DUF307; KEGG: bja:blr2954 hypothetical protein YP_001989876.1 KEGG: bja:bsr4225 hypothetical protein YP_001989877.1 PFAM: gamma-glutamyltranspeptidase; KEGG: bja:bll2229 similar to ACY1 bifunctional acylase YP_001989878.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: bja:blr4813 hypothetical protein YP_001989879.1 KEGG: sah:SaurJH1_0919 phage tape measure protein YP_001989880.1 KEGG: bbt:BBta_0515 hypothetical protein YP_001989881.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xau:Xaut_4077 acyl-CoA dehydrogenase domain protein YP_001989882.1 KEGG: bra:BRADO0362 cytochrome C precursor (cytochrome C552)(CycB) YP_001989883.1 KEGG: bja:blr0497 hypothetical protein YP_001989884.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: nha:Nham_3276 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) YP_001989885.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr0893 oxidoreductase YP_001989886.1 PFAM: cytochrome P450; KEGG: bbt:BBta_7679 cytochrome P450 family protein YP_001989887.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bja:blr4264 adenylate cyclase protein YP_001989888.1 metalloprotease YP_001989889.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr0898 probable ATP-binding protein YP_001989890.1 PFAM: aminotransferase class V; KEGG: bra:BRADO6985 aminotransferase, class V; serine--glyoxylate aminotransferase YP_001989891.1 KEGG: mlo:mlr2577 hypothetical protein YP_001989892.1 PFAM: nuclease (SNase domain protein); KEGG: bbt:BBta_0545 nuclease-like protein YP_001989893.1 KEGG: nha:Nham_3607 hypothetical protein YP_001989894.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: bja:bll0370 hypothetical protein YP_001989895.1 PFAM: carbonic anhydrase; KEGG: bbt:BBta_0791 carbonic anhydrase (carbonate dehydratase) YP_001989896.1 PFAM: peptidase S24 and S26 domain protein; KEGG: nha:Nham_0557 phage repressor YP_001989897.1 PFAM: protein of unknown function DUF952; KEGG: nha:Nham_0556 protein of unknown function DUF952 YP_001989898.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_001989899.1 PFAM: beta-lactamase domain protein; KEGG: bja:bll1142 hypothetical protein YP_001989900.1 PFAM: carbonic anhydrase; KEGG: azc:AZC_0918 carbonic anhydrase YP_001989901.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bja:bll1141 DNA-damage-inducible protein F YP_001989902.1 KEGG: nwi:Nwi_0463 hypothetical protein YP_001989903.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA YP_001989904.1 KEGG: bbt:BBta_0799 metallo-hydrolase/oxidoreductase YP_001989905.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bja:blr1146 hypothetical protein YP_001989906.1 PFAM: porin; KEGG: nha:Nham_0239 outer membrane protein YP_001989907.1 KEGG: bbt:BBta_0801 amino-acid ABC transport system, periplasmic binding protein YP_001989908.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: bbt:BBta_0802 ATP dependent DNA helicase YP_001989909.1 KEGG: nha:Nham_0241 metallophosphoesterase YP_001989910.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll1150 transcriptional regulatory protein YP_001989911.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr1151 hypothetical protein YP_001989912.1 KEGG: bja:bll8038 manganese transport protein YP_001989913.1 PFAM: conserved hypothetical protein; KEGG: bbt:BBta_0806 exported protein of unknown function YP_001989914.1 PFAM: protein of unknown function DUF81; KEGG: bja:bll1154 hypothetical protein YP_001989915.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: bja:bll1155 hypothetical protein YP_001989916.1 PFAM: regulatory protein TetR; KEGG: bja:blr0601 transcriptional regulatory protein YP_001989917.1 KEGG: bra:BRADO6726 hypothetical protein YP_001989918.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bra:BRADO6725 acyl-CoA dehydrogenase YP_001989919.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001989920.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bbt:BBta_0817 anaerobic fatty acid oxidation complex protein YP_001989921.1 PFAM: glutathione S-transferase domain; KEGG: bja:bll1162 glutathione S-transferase YP_001989922.1 PFAM: regulatory protein MarR; KEGG: bra:BRADO6719 transcriptional regulator, MarR family YP_001989923.1 KEGG: bja:blr1164 glutathione synthetase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GCS2 YP_001989924.1 SMART: Apple; KEGG: bja:blr1165 hypothetical protein YP_001989925.1 KEGG: nha:Nham_0252 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_001989926.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: bbt:BBta_0825 peptidase TldD YP_001989927.1 PFAM: protein of unknown function DUF433; KEGG: ana:asr2958 hypothetical protein YP_001989928.1 KEGG: rca:Rcas_0081 hypothetical protein YP_001989929.1 PFAM: regulatory protein MarR; Penicillinase repressor; KEGG: rso:RS02614 transcription regulator protein YP_001989930.1 PFAM: OsmC family protein; KEGG: pmy:Pmen_2630 OsmC family protein YP_001989931.1 PFAM: Invasion associated locus B family protein; KEGG: nwi:Nwi_0222 invasion associated locus B YP_001989932.1 KEGG: bbt:BBta_0828 cytochrome C oxidase, subunit II; TIGRFAM: cytochrome C oxidase, subunit II; PFAM: cytochrome C oxidase subunit II; cytochrome C oxidase subunit II transmembrane region YP_001989933.1 KEGG: bra:BRADO6706 cytochrome C oxidase, subunit I; TIGRFAM: cytochrome C oxidase, subunit I; PFAM: cytochrome C oxidase subunit I YP_001989934.1 converts protoheme IX and farnesyl diphosphate to heme O YP_001989935.1 KEGG: bja:bsr1173 CoxF protein YP_001989936.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_001989937.1 PFAM: cytochrome C oxidase subunit III; KEGG: bbt:BBta_0833 cytochrome C oxidase, subunit III YP_001989938.1 PFAM: protein of unknown function DUF983; KEGG: bja:blr1176 hypothetical protein YP_001989939.1 PFAM: Surfeit locus 1 family protein; KEGG: bja:blr1177 SUR1-like protein YP_001989940.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001989941.1 PFAM: peptidase M16 domain protein; KEGG: bja:blr1182 mitochondrial processing peptidase-like protein YP_001989942.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr1183 ribosomal-protein-alanine N-acetyltransferase YP_001989943.1 KEGG: bja:blr1184 hypothetical protein YP_001989944.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: nha:Nham_0266 H+-transporting two-sector ATPase, B/B' subunit YP_001989945.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: nwi:Nwi_0236 H+-transporting two-sector ATPase, B/B' subunit YP_001989946.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_001989947.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_001989948.1 KEGG: nha:Nham_0270 FoF1 ATP synthase, subunit I YP_001989949.1 PFAM: DSBA oxidoreductase; KEGG: bbt:BBta_0848 hypothetical protein YP_001989950.1 KEGG: bja:blr1191 hypothetical protein YP_001989951.1 PFAM: protein of unknown function UPF0047; KEGG: bja:blr1192 hypothetical protein YP_001989952.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bbt:BBta_0851 sugar transporter MFS family YP_001989953.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bja:blr1194 two-component response regulator YP_001989954.1 PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bbt:BBta_0860 two-component hybrid sensor histidine kinase and response regulator YP_001989955.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_001989956.1 PFAM: beta-lactamase domain protein; KEGG: bja:bll1202 hypothetical protein YP_001989957.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:bll1203 probable methyl-accepting chemotaxis protein YP_001989958.1 PFAM: porin; KEGG: bra:BRADO6669 conserved hypothetical protein; outer-membrane immunogenic protein precursor; secreted protein YP_001989959.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_3428 ABC transporter YP_001989960.1 PFAM: ABC transporter; KEGG: nha:Nham_3427 ABC-3 YP_001989961.1 PFAM: periplasmic solute binding protein; KEGG: nha:Nham_3426 periplasmic solute binding protein YP_001989962.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bbt:BBta_1342 cobalamin synthesis protein/P47K family protein YP_001989963.1 SMART: hypothetical protein; KEGG: bja:bll7767 hypothetical protein YP_001989964.1 PFAM: MgtC/SapB transporter; KEGG: bja:bll7766 hypothetical protein YP_001989965.1 KEGG: bra:BRADO6265 conserved hypothetical protein; signal peptide YP_001989966.1 PFAM: homospermidine synthase; KEGG: nwi:Nwi_0921 homospermidine synthase YP_001989967.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: nha:Nham_3421 GreA/GreB family elongation factor YP_001989968.1 PFAM: Endoribonuclease L-PSP; KEGG: bja:blr7761 hypothetical protein YP_001989970.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr7760 hypothetical protein YP_001989971.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bja:blr7759 ornithine decarboxylase YP_001989972.1 KEGG: bbt:BBta_1350 exported protein of unknown function YP_001989973.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: bja:bll7756 peptidyl-dipeptidase YP_001989974.1 PFAM: protein of unknown function DUF1007; KEGG: bja:bll7755 hypothetical protein YP_001989975.1 PFAM: high-affinity nickel-transporter; KEGG: bja:bll7754 hypothetical protein YP_001989976.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_001989977.1 PFAM: band 7 protein; KEGG: bja:bll7750 hypothetical protein YP_001989978.1 PFAM: protein of unknown function DUF107; KEGG: bbt:BBta_1360 membrane protein of unknown function YP_001989979.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: rle:RL2634 AraC family transcriptional regulator YP_001989980.1 KEGG: nha:Nham_3413 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_001989981.1 KEGG: bja:bll7745 hypothetical protein YP_001989982.1 KEGG: bbt:BBta_4227 membrane protein of unknown function YP_001989983.1 PFAM: ABC transporter inner membrane protein; KEGG: bxe:Bxe_B0493 ABC nitrate/sulfonate/bicarbonate family transporter inner membrane subunit YP_001989984.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rfr:Rfer_3115 ABC transporter YP_001989985.1 KEGG: xau:Xaut_1529 substrate-binding component of ABC transporter YP_001989986.1 KEGG: bra:BRADO1091 hypothetical protein YP_001989987.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bja:bll1500 hypothetical protein YP_001989988.1 KEGG: bbt:BBta_6959 glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase YP_001989989.1 PFAM: alpha/beta hydrolase fold; KEGG: bja:bll7739 lysophospholipase YP_001989990.1 PFAM: heat shock protein Hsp20; KEGG: nwi:Nwi_2952 heat shock protein HSP20 YP_001989991.1 KEGG: bja:bll7742 hypothetical protein YP_001989992.1 PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: nha:Nham_1138 glutamate synthase (ferredoxin) YP_001989993.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_001989994.1 PFAM: protein of unknown function DUF559; KEGG: cak:Caul_1522 protein of unknown function DUF559 YP_001989995.1 KEGG: cph:Cpha266_0459 hypothetical protein YP_001989996.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_6964 3-oxoacyl-(acyl-carrier-protein) reductase YP_001989997.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bja:blr1495 oxidoreductase YP_001989998.1 PFAM: protein of unknown function DUF459; KEGG: bja:bll1497 hypothetical protein YP_001989999.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001990001.1 TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: bra:BRADO1088 membrane-bound lytic murein transglycosylase, signal peptide YP_001990002.1 PFAM: lysine exporter; KEGG: bja:bll7736 efflux protein YP_001990003.1 PFAM: protein of unknown function DUF81; KEGG: bja:blr7734 hypothetical protein YP_001990004.1 PFAM: regulatory protein TetR; KEGG: mlo:mlr2419 probable transcriptional regulator YP_001990005.1 TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: bja:blr7731 inositol monophosphatase family protein YP_001990006.1 PFAM: Flp/Fap pilin component; KEGG: bra:BRADO5701 Flp/Fap pilin component YP_001990007.1 PFAM: N-formylglutamate amidohydrolase; KEGG: bja:blr7730 hypothetical protein YP_001990008.1 PFAM: response regulator receiver; KEGG: nha:Nham_1143 response regulator receiver domain protein (CheY-like) YP_001990009.1 KEGG: atc:AGR_pAT_739 hypothetical protein YP_001990010.1 KEGG: bbt:BBta_1649 hypothetical protein YP_001990011.1 stationary phase protein that binds TrpR repressor YP_001990012.1 PFAM: pirin; KEGG: bbt:BBta_1651 pirin family protein YP_001990013.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll7565 transcriptional regulatory protein YP_001990014.1 KEGG: bja:bll1491 hypothetical protein YP_001990015.1 PFAM: protein of unknown function DUF179; KEGG: nha:Nham_3550 hypothetical protein YP_001990016.1 KEGG: bja:bll1502 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001990017.1 TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bra:BRADO1103 NADPH quinone oxidoreductase YP_001990018.1 PFAM: protein of unknown function DUF1192; KEGG: bja:bsr1504 hypothetical protein YP_001990019.1 PFAM: protein of unknown function DUF1465; KEGG: bbt:BBta_6944 hypothetical protein YP_001990020.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_001990021.1 KEGG: nwi:Nwi_2746 ABC transporter ATP-binding/permease protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter; SMART: ATPase AAA YP_001990022.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_3543 GCN5-related N-acetyltransferase YP_001990023.1 PFAM: OmpA/MotB domain protein; KEGG: bja:bll1510 hypothetical protein YP_001990024.1 KEGG: nha:Nham_3541 hypothetical protein YP_001990025.1 PFAM: protein of unknown function DUF1295; KEGG: bbt:BBta_6937 membrane protein of unknown function YP_001990026.1 PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: bra:BRADO1113 cyclopropane-fatty-acyl-phospholipid synthase YP_001990029.1 SMART: helix-turn-helix domain protein; KEGG: xau:Xaut_0314 transcriptional regulator, XRE family YP_001990030.1 KEGG: xau:Xaut_0315 hypothetical protein YP_001990031.1 KEGG: xau:Xaut_0316 hypothetical protein YP_001990032.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: bja:blr7630 probable decarboxylase YP_001990033.1 TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein; KEGG: bja:blr7629 hypothetical protein YP_001990034.1 KEGG: bja:bll7628 hypothetical protein YP_001990035.1 PFAM: peptidase U32; KEGG: bja:bll7627 hypothetical protein YP_001990036.1 PFAM: peptidase U32; KEGG: bja:bll7626 hypothetical protein YP_001990037.1 KEGG: mem:Memar_2113 dipeptidyl aminopeptidase/acylaminoacyl-peptidase related protein YP_001990038.1 PFAM: regulatory protein TetR; KEGG: fre:Franean1_6626 transcriptional regulator, TetR family YP_001990039.1 PFAM: inositol monophosphatase; KEGG: bbt:BBta_6932 inositol monophosphatase YP_001990040.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: bra:BRADO1118 beta-lactamase YP_001990041.1 PFAM: thiamine monophosphate synthase; KEGG: nha:Nham_3535 thiamine monophosphate synthase YP_001990042.1 PFAM: fructose-bisphosphate aldolase class-I; KEGG: nha:Nham_3534 fructose-bisphosphate aldolase YP_001990043.1 PFAM: PemK family protein; KEGG: psp:PSPPH_A0142 hypothetical protein YP_001990044.1 KEGG: xcv:XCVc0003 hypothetical protein YP_001990045.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001990046.1 KEGG: bra:BRADO1124 glyceraldehyde-3-phosphate dehydrogenase (GAPDH); TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001990047.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_001990048.1 KEGG: nha:Nham_3530 hypothetical protein YP_001990049.1 PFAM: protein of unknown function DUF710; KEGG: bra:BRADO1128 hypothetical protein YP_001990050.1 PFAM: (uracil-5)-methyltransferase; KEGG: bra:BRADO2158 RNA methyltransferase YP_001990051.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bja:bll0821 multidrug efflux protein YP_001990052.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: nha:Nham_0777 hemolysin A YP_001990053.1 PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: bbt:BBta_2478 nucleoside 2-deoxyribosyltransferase YP_001990054.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001990055.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_001990056.1 PFAM: histone deacetylase superfamily; KEGG: bja:bll2653 hypothetical protein YP_001990057.1 PFAM: metallophosphoesterase; 5'-nucleotidase; KEGG: bja:bll2654 5'-nucleotidase family protein YP_001990058.1 KEGG: bra:BRADO3396 conserved hypothetical protein; signal peptide YP_001990059.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bra:BRADO2169 enoyl-CoA hydratase YP_001990060.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_2498 acyl-CoA dehydrogenase YP_001990061.1 PFAM: integrase family protein; KEGG: nha:Nham_0896 hypothetical protein YP_001990062.1 PFAM: integrase family protein; KEGG: ret:RHE_CH00241 recombinase protein, phage integrase family YP_001990067.1 KEGG: net:Neut_2625 hypothetical protein YP_001990069.1 KEGG: bra:BRADO6401 hypothetical protein YP_001990070.1 PFAM: IstB domain protein ATP-binding protein; SMART: ATPase AAA; KEGG: nha:Nham_3913 IstB-like ATP-binding protein YP_001990071.1 PFAM: Integrase catalytic region; KEGG: nha:Nham_3914 integrase, catalytic region YP_001990072.1 PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bbt:BBta_p0072 multicopper oxidase domain YP_001990073.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_p0125 copper-translocating P-type ATPase YP_001990074.1 KEGG: cak:Caul_5240 ISSpo6, transposase orf A YP_001990075.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: psa:PST_3361 heavy metal efflux pump CzcA YP_001990076.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: sfu:Sfum_2436 efflux transporter RND family, MFP subunit YP_001990077.1 PFAM: outer membrane efflux protein; KEGG: mxa:MXAN_0990 cation efflux system protein CusC YP_001990078.1 PFAM: protein of unknown function DUF411; KEGG: bbt:BBta_p0065 exported protein of unknown function YP_001990079.1 PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: gox:GOX2175 ATP synthase gamma chain YP_001990080.1 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit YP_001990081.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: gox:GOX2173 ATP synthase subunit B YP_001990082.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_001990083.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0 YP_001990084.1 KEGG: gox:GOX2170 transmembrane protein YP_001990085.1 TIGRFAM: F0F1-ATPase subunit; PFAM: F0F1-ATPase subunit KEGG: bxe:Bxe_C0047 ATP synthesis-related protein YP_001990086.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_001990087.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit YP_001990088.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001990089.1 PFAM: protein of unknown function DUF1109; KEGG: bja:blr4929 hypothetical protein YP_001990091.1 KEGG: bbt:BBta_p0110 exported protein of unknown function YP_001990092.1 KEGG: bbt:BBta_p0145 membrane protein of unknown function YP_001990093.1 KEGG: bbt:BBta_3429 exported protein of unknown function YP_001990094.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001990095.1 PFAM: protein of unknown function DUF1109; KEGG: bja:blr4929 hypothetical protein YP_001990097.1 KEGG: nha:Nham_1942 hypothetical protein YP_001990098.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_p0056 copper-transporting P-type ATPase YP_001990099.1 KEGG: pna:Pnap_1254 hypothetical protein YP_001990100.1 PFAM: transposase IS4 family protein; KEGG: gox:GOX2731 transposase (class IV) YP_001990101.1 PFAM: conserved hypothetical protein; KEGG: bbt:BBta_p0149 hypothetical protein YP_001990102.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bbt:BBta_p0148 metallo-beta-lactamase family protein YP_001990103.1 KEGG: bbt:BBta_p0110 exported protein of unknown function YP_001990104.1 KEGG: bbt:BBta_p0147 exported protein of unknown function YP_001990105.1 PFAM: protein of unknown function DUF1622; KEGG: bbt:BBta_p0144 membrane protein of unknown function YP_001990106.1 KEGG: bbt:BBta_p0197 hypothetical protein YP_001990107.1 PFAM: protein of unknown function DUF1520; KEGG: bja:bll4817 hypothetical protein YP_001990108.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding protein; KEGG: bja:bll4816 hypothetical protein YP_001990109.1 KEGG: bja:bll4815 hypothetical protein YP_001990110.1 KEGG: bja:bll4814 hypothetical protein YP_001990112.1 KEGG: nha:Nham_4383 hypothetical protein YP_001990113.1 KEGG: nha:Nham_4633 outer membrane efflux protein YP_001990114.1 PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bbt:BBta_p0117 twin-arginine translocation pathway signal; copper resistance protein (CopA) YP_001990115.1 PFAM: blue (type 1) copper domain protein; KEGG: xau:Xaut_4902 blue (type 1) copper domain protein YP_001990116.1 KEGG: bbt:BBta_p0116 hypothetical protein YP_001990117.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mes:Meso_3863 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001990118.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: nha:Nham_3900 transposase, IS111A/IS1328/IS1533 YP_001990119.1 KEGG: bra:BRADO2812 hypothetical protein YP_001990120.1 KEGG: bbt:BBta_1404 hypothetical protein YP_001990121.1 KEGG: lpp:lpp1217 hypothetical protein YP_001990122.1 KEGG: bbt:BBta_5400 membrane protein of unknown function with acyltransferase family protein domain YP_001990125.1 KEGG: mab:MAB_3233 hypothetical protein YP_001990126.1 KEGG: bbt:BBta_p0070 cytochrome C class I protein YP_001990127.1 KEGG: bbt:BBta_p0208 membrane protein of unknown function YP_001990129.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dol:Dole_0828 filamentation induced by cAMP protein Fic YP_001990130.1 PFAM: IstB domain protein ATP-binding protein; SMART: ATPase AAA; KEGG: bja:bll8199 transposase YP_001990131.1 PFAM: IS66 Orf2 family protein; KEGG: azc:AZC_1284 transposase YP_001990132.1 PFAM: transposase IS3/IS911 family protein; KEGG: nha:Nham_3008 transposase IS3/IS911 YP_001990133.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mgm:Mmc1_1385 TPR repeat-containing protein YP_001990134.1 KEGG: nha:Nham_1982 hypothetical protein YP_001990135.1 KEGG: nha:Nham_1357 hypothetical protein YP_001990137.1 KEGG: nha:Nham_1356 hypothetical protein YP_001990139.1 KEGG: gsu:GSU2110 hypothetical protein YP_001990140.1 KEGG: gsu:GSU2109 hypothetical protein YP_001990141.1 KEGG: gsu:GSU2108 hypothetical protein YP_001990142.1 KEGG: gsu:GSU2107 hypothetical protein YP_001990143.1 PFAM: PglZ domain protein; KEGG: gsu:GSU2106 hypothetical protein YP_001990144.1 KEGG: gsu:GSU2105 hypothetical protein YP_001990145.1 KEGG: rha:RHA1_ro08741 hypothetical protein YP_001990146.1 KEGG: xcb:XC_2667 chromosome segregation protein YP_001990150.1 KEGG: bbt:BBta_3431 hypothetical protein YP_001990151.1 PFAM: protein of unknown function DUF159; KEGG: bbt:BBta_3432 hypothetical protein YP_001990153.1 KEGG: pna:Pnap_4679 hypothetical protein YP_001990154.1 KEGG: reh:H16_B0149 hypothetical protein YP_001990155.1 3'-5' exonuclease of DNA polymerase III YP_001990159.1 KEGG: oan:Oant_1849 hypothetical protein YP_001990161.1 KEGG: ade:Adeh_0499 hypothetical protein YP_001990163.1 KEGG: bja:bll8084 hypothetical protein YP_001990164.1 KEGG: nha:Nham_3778 hypothetical protein YP_001990165.1 KEGG: nha:Nham_3779 metallophosphoesterase YP_001990166.1 PFAM: ATPase AAA; KEGG: nha:Nham_3781 ATPase AAA YP_001990167.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: bbt:BBta_1994 uptake hydrogenase accessory YP_001990168.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: bbt:BBta_1995 uptake hydrogenase accessory YP_001990169.1 KEGG: bja:bll6942 uptake hydrogenase precursor; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein YP_001990170.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: bbt:BBta_1997 uptake hydrogenase large subunit precursor YP_001990171.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: bja:blr6947 probable Ni/Fe-hydrogenase B-type cytochrome subunit YP_001990172.1 TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: bja:bll6939 HupD protein YP_001990173.1 PFAM: HupE/UreJ protein; KEGG: psb:Psyr_4454 HupE/UreJ protein YP_001990174.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: bja:bsl6938 hydrogenase expression/formation protein YP_001990175.1 PFAM: hydrogenase-1 expression HyaE; KEGG: bra:BRADO1689 hydrogenase expression/formation protein HupG YP_001990176.1 PFAM: HupH hydrogenase expression protein; KEGG: bja:bll6936 HupH protein YP_001990177.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: azo:azo3796 probable rubredoxin protein YP_001990178.1 KEGG: bja:bll6934 HupJ protein YP_001990179.1 KEGG: bbt:BBta_2005 hydrogenase expression/formation YP_001990180.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: bja:bll6932 HypA protein YP_001990181.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: bbt:BBta_2007 hydrogenase nickel incorporation YP_001990182.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: bbt:BBta_2008 carbamoyl phosphate phosphatase, (NiFe) hydrogenase maturation protein YP_001990183.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: bja:bsl6929 hydrogenase expression/formation protein YP_001990184.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: bbt:BBta_2010 hydrogenase expression/formation YP_001990185.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: bbt:BBta_2011 hydrogenase maturation YP_001990186.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; SMART: ATPase AAA; KEGG: bra:BRADO1701 two component sigma-54-dependent hydrogenase transcriptional regulator, fis family YP_001990187.1 KEGG: bja:bll6924 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001990188.1 KEGG: bja:blr5269 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001990189.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bra:BRADO6658 transcriptional regulator (PcaR-like), IclR family YP_001990190.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bja:bll1070 probable dioxygenase YP_001990191.1 PFAM: glutamine synthetase catalytic region; KEGG: bja:bll1069 probable glutamine synthetase YP_001990192.1 PFAM: extracellular ligand-binding receptor; KEGG: rle:RL3906 solute-binding component of ABC transporter YP_001990193.1 PFAM: inner-membrane translocator; KEGG: bcs:BCAN_B0649 hypothetical protein YP_001990194.1 PFAM: inner-membrane translocator; KEGG: rle:RL3908 transmembrane component of ABC transporter YP_001990195.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sme:SMb20785 branched-chain amino acid uptake ABC transporter ATP-binding protein YP_001990196.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH03449 probable branched-chain amino acid ABC transporter ATP-binding protein YP_001990197.1 PFAM: response regulator receiver; GAF domain protein; HWE histidine kinase; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: atc:AGR_C_3927 hypothetical protein YP_001990198.1 SMART: regulatory protein Crp; KEGG: bja:blr0536 transcriptional regulatory protein YP_001990199.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bbt:BBta_6056 transcriptional regulator, Crp/Fnr family YP_001990200.1 PFAM: phosphoglycerate mutase; KEGG: bja:bll327 probable cobalamin synthesis protein YP_001990201.1 KEGG: rsq:Rsph17025_3448 hypothetical protein YP_001990202.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pla:Plav_0463 acyl-CoA dehydrogenase domain protein YP_001990203.1 PFAM: alpha/beta hydrolase fold; KEGG: bja:bll2527 hydrolase YP_001990204.1 PFAM: regulatory protein ArsR; KEGG: bbt:BBta_3666 transcriptional regulatory protein, ARS family, SoxR protein YP_001990205.1 SMART: rhodanese domain protein; KEGG: rme:Rmet_2371 rhodanese-like protein YP_001990206.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: tbd:Tbd_2330 hypothetical protein YP_001990207.1 TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: ppd:Ppro_2504 nitrogenase-associated protein YP_001990208.1 KEGG: bja:blr6953 molybdenum ABC transporter ATP-binding protein YP_001990209.1 TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: bja:bll6950 pyrophosphorylase YP_001990210.1 PFAM: AMP-dependent synthetase and ligase; KEGG: xau:Xaut_4075 AMP-dependent synthetase and ligase YP_001990211.1 KEGG: bra:BRADO2820 hypothetical protein YP_001990212.1 PFAM: NUDIX hydrolase; KEGG: bja:bll6630 hypothetical protein YP_001990213.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway YP_001990214.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway YP_001990215.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bbt:BBta_2709 transcriptional regulator, AraC/XylS family YP_001990216.1 PFAM: cytochrome P450; KEGG: bra:BRADO2350 cytochrome P450 YP_001990217.1 PFAM: beta-lactamase domain protein; KEGG: bra:BRADO2425 hypothetical protein YP_001990218.1 PFAM: DSBA oxidoreductase; KEGG: bja:bll0819 hypothetical protein YP_001990219.1 PFAM: protein of unknown function DUF81; KEGG: mlo:mll3907 integral membrane protein YP_001990220.1 TIGRFAM: cytochrome C oxidase accessory protein CcoG; KEGG: bra:BRADO3206 nitrogen fixation protein FixG (homologous to RdxB), with 4Fe-4S ferredoxin, iron-sulfur binding domain YP_001990221.1 KEGG: bja:bsr3073 hypothetical protein YP_001990222.1 PFAM: transcriptional regulator PadR family protein; KEGG: xau:Xaut_0164 transcriptional regulator, PadR-like family YP_001990223.1 TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: bja:blr2485 Rieske iron-sulfur protein YP_001990224.1 KEGG: rsq:Rsph17025_1840 hypothetical protein YP_001990225.1 KEGG: bra:BRADO4593 conserved hypothetical protein; secreted protein YP_001990226.1 PFAM: regulatory protein ArsR; KEGG: bja:bll5773 transcriptional regulatory protein YP_001990227.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: bra:BRADO3201 membrane fusion protein, component of an efflux pump (RND family, MFP subunit) YP_001990228.1 PFAM: acriflavin resistance protein; KEGG: bja:bll5771 AcrB/AcrD/AcrF family cation efflux protein YP_001990229.1 PFAM: DSBA oxidoreductase; KEGG: bja:blr1349 hypothetical protein YP_001990230.1 KEGG: eba:ebA3059 hypothetical protein YP_001990231.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: jan:Jann_3739 oxidoreductase FAD/NAD(P)-binding YP_001990232.1 PFAM: cytochrome b5; KEGG: mgr:MGG_09315 hypothetical protein YP_001990233.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: nha:Nham_3225 DNA methylase N-4/N-6 YP_001990234.1 PFAM: protein of unknown function zinc metallopeptidase KEGG: nha:Nham_3224 protein of unknown function, zinc metallopeptidase YP_001990235.1 TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: bja:blr2511 molybdopterin biosynthesis protein B YP_001990236.1 PFAM: coenzyme A transferase; KEGG: bja:bll1293 glutaconate CoA-transferase subunit A YP_001990237.1 PFAM: coenzyme A transferase; KEGG: pde:Pden_4599 CoA transferase, subunit B YP_001990238.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: bja:bll2512 transcriptional regulatory protein YP_001990239.1 KEGG: bja:bll2513 hypothetical protein YP_001990240.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bja:blr2519 hypothetical protein YP_001990241.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001990242.1 KEGG: nha:Nham_3220 hypothetical protein YP_001990243.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: bja:bll2523 hypothetical protein YP_001990244.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: bra:BRADO2020 electron transfer flavoprotein dehydrogenases YP_001990245.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr2525 hypothetical protein YP_001990246.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_001990247.1 PFAM: polyprenyl synthetase; KEGG: bbt:BBta_2349 octaprenyl diphosphate synthase YP_001990248.1 KEGG: bbt:BBta_2350 hypothetical protein YP_001990249.1 PFAM: methyltransferase small; KEGG: bra:BRADO2025 conserved hypothetical protein; S-adenosyl-L-methionine-dependent methyltransferase domain YP_001990250.1 PFAM: peptidase S49; KEGG: bja:blr2534 proteinase YP_001990251.1 KEGG: bbt:BBta_2354 hypothetical protein YP_001990252.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001990253.1 PFAM: protein of unknown function DUF559; KEGG: bbt:BBta_2356 hypothetical protein YP_001990254.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001990255.1 KEGG: cak:Caul_3593 hypothetical protein YP_001990256.1 KEGG: acr:Acry_0183 membrane protein-like protein YP_001990257.1 KEGG: bbt:BBta_2359 hypothetical protein YP_001990258.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001990259.1 PFAM: cell wall hydrolase SleB; KEGG: nha:Nham_3504 cell wall hydrolase, SleB YP_001990260.1 KEGG: bja:bll2540 nicotinate-mononucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_001990261.1 catalyzes the formation of oxaloacetate from L-aspartate YP_001990262.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_001990263.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: nha:Nham_3502 alcohol dehydrogenase GroES-like YP_001990264.1 KEGG: nha:Nham_3501 hypothetical protein YP_001990265.1 KEGG: bja:bll2549 hypothetical protein YP_001990266.1 KEGG: bja:bll2550 hypothetical protein YP_001990267.1 KEGG: nha:Nham_4022 hypothetical protein YP_001990268.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: nha:Nham_4021 metal dependent phosphohydrolase YP_001990270.1 KEGG: bja:bll2553 3-methyladenine-DNA glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_001990271.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: nwi:Nwi_2704 glycine cleavage T protein (aminomethyl transferase) YP_001990272.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_001990273.1 KEGG: bra:BRADO5216 hypothetical protein YP_001990274.1 KEGG: nha:Nham_4017 hypothetical protein YP_001990275.1 PFAM: conserved hypothetical protein; KEGG: bbt:BBta_2380 exported protein of unknown function YP_001990276.1 PFAM: NUDIX hydrolase; KEGG: bja:bll2562 GDP-mannose mannosyl hydrolase YP_001990277.1 KEGG: nha:Nham_4012 hypothetical protein YP_001990278.1 PFAM: protein of unknown function DUF159; KEGG: bja:blr2564 hypothetical protein YP_001990279.1 KEGG: bra:BRADO3468 hypothetical protein YP_001990280.1 PFAM: plasmid stabilization system; KEGG: rle:pRL70123 stabilisation protein YP_001990281.1 PFAM: FAD linked oxidase domain protein; KEGG: bbt:BBta_2386 D-lactate ferricytochrome C oxidoreductase YP_001990282.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: bja:bll2570 hypothetical protein YP_001990283.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_3223 transcriptional regulator YP_001990284.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azc:AZC_3224 4-methylmuconolactone transporter YP_001990285.1 PFAM: amidohydrolase 2; KEGG: azc:AZC_3225 2-pyrone-4,6-dicarboxylate hydrolase YP_001990286.1 KEGG: dre:553448 hypothetical protein LOC553448 YP_001990287.1 PFAM: Curlin associated repeat protein; KEGG: shm:Shewmr7_3300 curlin associated repeat protein YP_001990288.1 KEGG: ret:RHE_PE00163 hypothetical protein YP_001990289.1 KEGG: bur:Bcep18194_B2589 hypothetical protein YP_001990290.1 KEGG: fjo:Fjoh_2350 hypothetical protein YP_001990291.1 KEGG: fjo:Fjoh_2351 curli production assembly/transport component CsgG YP_001990292.1 PFAM: lytic transglycosylase; KEGG: bja:bll2706 probable transglycosylase YP_001990294.1 KEGG: xau:Xaut_1427 hypothetical protein YP_001990295.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mag:amb3351 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase YP_001990296.1 KEGG: azo:azo2883 conserved hypothetical secreted protein YP_001990297.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: hha:Hhal_0074 alkylhydroperoxidase like protein, AhpD family YP_001990298.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: bra:BRADO2133 GTP cyclohydrolase II, riboflavin biosynthesis YP_001990299.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_2451 glutaryl-CoA dehydrogenase YP_001990300.1 PFAM: beta-lactamase domain protein; KEGG: bra:BRADO2135 beta-lactamase YP_001990301.1 PFAM: chemotaxis sensory transducer; KEGG: bja:bll1533 methyl accepting chemotaxis protein YP_001990302.1 PFAM: protein of unknown function DUF28; KEGG: bja:blr1534 hypothetical protein YP_001990303.1 KEGG: cpv:cgd1_590 hypothetical protein, proline rich C-terminus, signal peptide, very large protein YP_001990304.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_001990305.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001990306.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bbt:BBta_6907 hypothetical protein YP_001990307.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001990308.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: nha:Nham_3520 4-hydroxybenzoyl-CoA thioesterase YP_001990309.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gbe:GbCGDNIH1_1652 NADH dehydrogenase YP_001990310.1 KEGG: bja:bll7876 similar to OpgC protein YP_001990311.1 PFAM: protein of unknown function DUF1348; KEGG: bja:bll7210 hypothetical protein YP_001990312.1 PFAM: regulatory protein TetR; KEGG: xau:Xaut_1146 transcriptional regulator, TetR family YP_001990313.1 PFAM: DGPFAETKE family protein; KEGG: bja:bll7171 hypothetical protein YP_001990314.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bja:bll7170 hypothetical protein YP_001990315.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr7165 oxidoreductase YP_001990316.1 KEGG: rsh:Rsph17029_3809 hypothetical protein YP_001990318.1 PFAM: DGPFAETKE family protein; KEGG: nha:Nham_3518 hypothetical protein YP_001990319.1 PFAM: regulatory protein TetR; KEGG: nha:Nham_3517 transcriptional regulator, TetR family YP_001990320.1 KEGG: bja:bll7160 hypothetical protein YP_001990321.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: nha:Nham_3277 alkylhydroperoxidase AhpD core YP_001990322.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001990323.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: nha:Nham_3515 MotA/TolQ/ExbB proton channel YP_001990324.1 PFAM: biopolymer transport protein ExbD/TolR; KEGG: bra:BRADO1171 TolR protein YP_001990325.1 TIGRFAM: protein TolA; KEGG: nha:Nham_3513 TolA YP_001990326.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_001990327.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: nha:Nham_3511 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) YP_001990328.1 KEGG: nha:Nham_3510 hypothetical protein YP_001990329.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: bja:bll7149 peptidoglycan-associated lipoprotein YP_001990330.1 TIGRFAM: tol-pal system protein YbgF; KEGG: bja:bll7148 hypothetical protein YP_001990331.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: bja:bll7147 hypothetical protein YP_001990332.1 KEGG: nha:Nham_3506 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; ATPase AAA; SMART: ATPase AAA YP_001990333.1 PFAM: AzlC family protein; KEGG: azc:AZC_0085 branched-chain amino acid transport protein YP_001990334.1 PFAM: branched-chain amino acid transport; KEGG: xau:Xaut_1764 branched-chain amino acid transport YP_001990335.1 PFAM: regulatory protein TetR; KEGG: bbt:BBta_6871 transcriptional regulator, TetR family YP_001990336.1 PFAM: FAD linked oxidase domain protein; KEGG: bbt:BBta_1662 glycolate oxidase, subunit GlcD YP_001990337.1 PFAM: FAD linked oxidase domain protein; KEGG: bja:bll7541 glycolate oxidase subunit YP_001990338.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: nha:Nham_3202 protein of unknown function DUF224, cysteine-rich region YP_001990339.1 KEGG: pae:PA5253 alginate regulatory protein AlgP YP_001990340.1 KEGG: nha:Nham_3199 hypothetical protein YP_001990341.1 PFAM: ABC transporter; SbmABacA family protein; ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_1667 ABC transporter (fused ATP-binding and permease components) YP_001990342.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: bra:BRADO6118 glycolate permease (LctP family) YP_001990343.1 KEGG: nwi:Nwi_2577 hypothetical protein YP_001990344.1 PFAM: FAD dependent oxidoreductase; KEGG: bja:blr7054 hypothetical protein YP_001990345.1 KEGG: bbt:BBta_1670 exported protein of unknown function YP_001990346.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; the rhizobia have multiple copies of the groEL gene which are active under different environmental conditions; the S. meliloti protein in this cluster is not associated with a groES gene YP_001990347.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001990348.1 KEGG: nha:Nham_3194 hypothetical protein YP_001990349.1 PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_1381 major facilitator superfamily MFS_1 YP_001990350.1 KEGG: bra:BRADO6112 conserved hypothetical protein; methyl-accepting chemotaxis protein YP_001990351.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: nha:Nham_3192 ErfK/YbiS/YcfS/YnhG YP_001990352.1 KEGG: bja:blr7528 hypothetical protein YP_001990353.1 PFAM: YdjC family protein; KEGG: nha:Nham_3190 YdjC-like protein YP_001990354.1 PFAM: glycosyl transferase family 2; KEGG: bja:blr7526 probable glycosyl transferase YP_001990355.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_001990356.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_001990357.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_001990358.1 KEGG: bja:bll7522 hypothetical protein YP_001990359.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin YP_001990360.1 KEGG: bra:BRADO6101 hypothetical protein YP_001990361.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: bja:bll7519 PmbA/TldD related protein YP_001990362.1 PFAM: inositol monophosphatase; KEGG: nha:Nham_3181 inositol monophosphatase YP_001990363.1 KEGG: nha:Nham_3180 hypothetical protein YP_001990364.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: bja:bll7515 3-deoxy-D-manno-octulosonic acid transferase-like protein YP_001990365.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_001990366.1 KEGG: bja:bsr7510 hypothetical protein YP_001990367.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_001990368.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_001990369.1 PFAM: alpha/beta hydrolase fold; KEGG: bja:bll7497 haloacetate dehalogenase YP_001990370.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: nha:Nham_3172 CMP/dCMP deaminase, zinc-binding YP_001990371.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: nha:Nham_3171 pseudouridine synthase, Rsu YP_001990372.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase KEGG: bja:bll7494 hypothetical protein YP_001990373.1 involved in methylation of ribosomal protein L3 YP_001990374.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: nha:Nham_3143 molybdopterin biosynthesis MoaE YP_001990375.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: bbt:BBta_1725 molybdenum cofactor biosynthesis protein D YP_001990376.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: nwi:Nwi_2525 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001990377.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001990378.1 KEGG: nha:Nham_3147 outer-membrane immunogenic protein precursor YP_001990379.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bra:BRADO6053 cold shock protein, DNA binding YP_001990380.1 PFAM: protein of unknown function DUF519; KEGG: nwi:Nwi_2528 protein of unknown function DUF519 YP_001990381.1 PFAM: response regulator receiver; KEGG: nha:Nham_3160 response regulator receiver domain protein (CheY-like) YP_001990382.1 KEGG: bja:bll7455 hypothetical protein YP_001990383.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: bbt:BBta_1741 4-oxalocrotonate tautomerase YP_001990384.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001990385.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_001990386.1 PFAM: EAL domain protein; KEGG: bra:BRADO6063 conserved hypothetical protein; signal peptide; EAL domain YP_001990387.1 TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:blr7478 hypothetical protein YP_001990388.1 KEGG: bra:BRADO1961 hypothetical protein YP_001990389.1 TIGRFAM: conserved hypothetical membrane protein; KEGG: nha:Nham_3253 double-transmembrane region-like YP_001990390.1 KEGG: bbt:BBta_2270 hypothetical protein YP_001990391.1 PFAM: ATPase AAA; ATPase AAA; KEGG: bra:BRADO1964 MoxR family protein YP_001990392.1 PFAM: protein of unknown function DUF1285; KEGG: bja:blr2466 hypothetical protein YP_001990393.1 PFAM: NUDIX hydrolase; KEGG: bra:BRADO1966 NUDIX hydrolase YP_001990394.1 KEGG: bbt:BBta_2274 hypothetical protein YP_001990395.1 PFAM: polynucleotide adenylyltransferase region; KEGG: nha:Nham_3247 polynucleotide adenylyltransferase region YP_001990396.1 KEGG: bja:bsl2479 hypothetical protein YP_001990397.1 KEGG: nwi:Nwi_2619 hypothetical protein YP_001990398.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: nwi:Nwi_2618 tRNA/rRNA methyltransferase (SpoU) YP_001990399.1 TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: bja:blr2485 Rieske iron-sulfur protein YP_001990400.1 PFAM: cytochrome C1; cytochrome b/b6 domain; KEGG: bbt:BBta_2301 cytochrome b/c1 YP_001990401.1 PFAM: dienelactone hydrolase; KEGG: bja:blr2487 hypothetical protein YP_001990402.1 KEGG: bbt:BBta_2461 hypothetical protein YP_001990403.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_2462 short-chain dehydrogenase YP_001990404.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_001990405.1 KEGG: nha:Nham_0766 hypothetical protein YP_001990406.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: bbt:BBta_2465 heat shock (DnaJ-kile) YP_001990407.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_001990408.1 PFAM: phosphoglycerate mutase; KEGG: bja:blr2630 phosphoglycerate mutase YP_001990409.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001990410.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bja:blr2632 adenylate cyclase protein YP_001990411.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_001990412.1 PFAM: protein of unknown function DUF1194; KEGG: bbt:BBta_2473 exported protein of unknown function YP_001990413.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: rru:Rru_A0930 iron-containing alcohol dehydrogenase YP_001990414.1 PFAM: Aldehyde Dehydrogenase_; KEGG: mlo:mll6639 aldehyde dehydrogenase YP_001990415.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase AAA; SMART: ATPase AAA; KEGG: xau:Xaut_0367 GAF modulated sigma54 specific transcriptional regulator, fis family YP_001990416.1 PFAM: carotenoid oxygenase; KEGG: bja:blr5790 lignostilbene-alpha,beta-dioxygenase YP_001990417.1 KEGG: hha:Hhal_0248 hypothetical protein YP_001990418.1 KEGG: hha:Hhal_0249 hypothetical protein YP_001990419.1 KEGG: hha:Hhal_0250 hypothetical protein YP_001990420.1 PFAM: alpha/beta hydrolase fold; KEGG: bra:BRADO1608 alpha/beta hydrolase fold YP_001990421.1 PFAM: MlrC domain protein; Microcystin LR degradation protein MlrC-like; KEGG: bja:blr5601 hypothetical protein YP_001990422.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_5258 ABC transporter (ATP-binding protein) YP_001990423.1 PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO2920 ABC transporter (permease protein); membrane protein YP_001990424.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_5256 ABC transporter (permease protein) YP_001990425.1 catalyzes the release of C-terminal glutamate residues from N-acylating moieties YP_001990426.1 PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_5254 ABC transporter (substrate-binding protein) YP_001990427.1 KEGG: sma:SAV6022 dihydrolipoamide S-succinyltransferase YP_001990428.1 PFAM: CBS domain containing protein; KEGG: bbt:BBta_3002 signal-transduction protein with CBS domains YP_001990430.1 PFAM: CHAD domain containing protein; KEGG: mex:Mext_3081 CHAD domain containing protein YP_001990432.1 TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: chy:CHY_0121 indolepyruvate ferredoxin oxidoreductase, IorA subunit YP_001990433.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: swo:Swol_1195 indolepyruvate oxidoreductase subunit beta 2 YP_001990434.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: pth:PTH_0847 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit YP_001990435.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_001990436.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sat:SYN_02500 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit YP_001990437.1 KEGG: mag:amb1245 coenzyme F390 synthetase YP_001990438.1 PFAM: inner-membrane translocator; KEGG: bja:bll7932 ABC transporter permease protein YP_001990439.1 PFAM: inner-membrane translocator; KEGG: bja:bll7931 ABC transporter permease protein YP_001990440.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll7930 ABC transporter ATP-binding protein YP_001990441.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll7929 ABC transporter ATP-binding protein YP_001990442.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll7928 fatty-acid--CoA ligase YP_001990443.1 PFAM: extracellular ligand-binding receptor; KEGG: bja:bll7927 hypothetical protein YP_001990444.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:blr7270 probable acyl-CoA dehydrogenase YP_001990445.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:blr7269 acyl-CoA dehydrogenase YP_001990446.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001990447.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: bja:bll7073 biopolymer transport protein YP_001990448.1 TIGRFAM: TonB system transport protein ExbD; PFAM: biopolymer transport protein ExbD/TolR; KEGG: bja:bll7072 biopolymer transport protein YP_001990449.1 TIGRFAM: TonB family protein; KEGG: bja:bll7071 TonB protein YP_001990450.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_5258 AMP-dependent synthetase and ligase YP_001990451.1 KEGG: nha:Nham_3876 hypothetical protein YP_001990452.1 KEGG: nha:Nham_3877 hypothetical protein YP_001990453.1 PFAM: protein of unknown function DUF1469; KEGG: nha:Nham_3878 protein of unknown function DUF1469 YP_001990454.1 KEGG: noc:Noc_1592 hypothetical protein YP_001990455.1 PFAM: ribonuclease BN; KEGG: bja:blr7476 hypothetical protein YP_001990456.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bbt:BBta_0652 transcriptional regulatory protein, LuxR family YP_001990457.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bja:bll0966 two-component hybrid sensor and regulator YP_001990458.1 TIGRFAM: urea ABC transporter urea binding protein; KEGG: bja:blr0967 ABC transporter substrate-binding protein YP_001990459.1 TIGRFAM: urea ABC transporter permease protein UrtB; PFAM: inner-membrane translocator; KEGG: bja:blr0968 ABC transporter permease protein YP_001990460.1 TIGRFAM: urea ABC transporter permease protein UrtC; PFAM: inner-membrane translocator; KEGG: bja:blr0969 ABC transporter permease protein YP_001990461.1 TIGRFAM: urea ABC transporter ATP-binding protein UrtD; PFAM: ABC transporter; KEGG: bja:blr0970 ABC transporter ATP-binding protein YP_001990462.1 KEGG: bbt:BBta_0658 branched-chain amino acid ABC transporter (ATP-binding protein); TIGRFAM: urea ABC transporter ATP-binding protein UrtE; PFAM: ABC transporter; SMART: ATPase AAA YP_001990463.1 PFAM: Acetamidase/formamidase; KEGG: bbt:BBta_0659 formamidase (formamide amidohydrolase) YP_001990464.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: bbt:BBta_0660 formamidase regulatory protein FmdB YP_001990465.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cak:Caul_2743 cobalamin 5'-phosphate synthase YP_001990467.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pde:Pden_5102 ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_001990468.1 PFAM: UspA domain protein; KEGG: pla:Plav_3480 UspA domain protein YP_001990469.1 PFAM: FAD linked oxidase domain protein; KEGG: mtu:Rv3107c possible alkyldihydroxyacetonephosphate synthase AgrS (alkyl-DHAP synthase) (alkylglycerone-phosphate synthase) YP_001990470.1 KEGG: bja:blr7780 hypothetical protein YP_001990471.1 PFAM: protein of unknown function DUF1153; KEGG: nha:Nham_0692 protein of unknown function DUF1153 YP_001990472.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_001990473.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001990474.1 binds to and inhibits the function of flagella specific ATPase FliI YP_001990475.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001990476.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; SMART: ATPase AAA; KEGG: nha:Nham_0687 two component, sigma54 specific, transcriptional regulator, fis family YP_001990477.1 KEGG: bbt:BBta_1870 exported protein of unknown function YP_001990478.1 KEGG: bja:bsl0168 hypothetical protein YP_001990479.1 KEGG: bja:bsl0170 hypothetical protein YP_001990480.1 PFAM: transglutaminase domain protein; KEGG: bja:bll5557 hypothetical protein YP_001990481.1 KEGG: nha:Nham_0686 exodeoxyribonuclease V YP_001990482.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bra:BRADO1328 S-adenosyl-L-methionine-dependent methyltransferase YP_001990483.1 PFAM: Ferritin Dps family protein; KEGG: bra:BRADO1329 DNA-binding stress protein (oxydative damage protectant) YP_001990484.1 KEGG: bra:BRADO1333 hypothetical protein YP_001990485.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_001990486.1 PFAM: alpha/beta hydrolase fold; Thioesterase; KEGG: bja:bll7370 probable hydrolase YP_001990487.1 KEGG: nha:Nham_2870 GatB/YqeY YP_001990488.1 KEGG: bja:bll7362 hypothetical protein YP_001990489.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bja:blr7360 hypothetical protein YP_001990490.1 PFAM: regulatory protein ArsR; KEGG: bja:blr7359 transcriptional regulatory protein YP_001990491.1 PFAM: lysine exporter; KEGG: bja:bll7356 efflux protein YP_001990492.1 PFAM: N-formylglutamate amidohydrolase; KEGG: nwi:Nwi_2443 N-formylglutamate amidohydrolase YP_001990493.1 PFAM: AIG2 family protein; KEGG: bja:bll7352 hypothetical protein YP_001990495.1 synthesizes RNA primers at the replication forks YP_001990496.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_001990497.1 KEGG: ccr:CC_2514 hypothetical protein YP_001990498.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: azc:AZC_3257 plasmid maintenance system antidote protein YP_001990499.1 PFAM: plasmid maintenance system killer; KEGG: rru:Rru_A2778 plasmid maintenance system killer YP_001990500.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: maq:Maqu_3791 diguanylate cyclase YP_001990501.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_0442 short-chain dehydrogenase/reductase SDR YP_001990502.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001990503.1 KEGG: reh:H16_A1583 hypothetical protein YP_001990504.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bbt:BBta_4318 intracellular proteinase YP_001990505.1 KEGG: bra:BRADO1363 hypothetical protein YP_001990506.1 TIGRFAM: lytic murein transglycosylase; KEGG: nha:Nham_2862 lytic murein transglycosylase YP_001990507.1 PFAM: flagellar hook capping protein; KEGG: nha:Nham_0693 flagellar hook capping protein YP_001990508.1 PFAM: flagellar hook-length control protein; KEGG: bja:blr6996 hypothetical protein YP_001990509.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001990510.1 PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: bja:bll6994 phosphatidylethanolamine N-methyltransferase YP_001990511.1 KEGG: bra:BRADO5892 conserved hypothetical protein; signal peptide YP_001990513.1 PFAM: integrase family protein; KEGG: acr:Acry_3449 hypothetical protein YP_001990514.1 PFAM: RNA methylase; N-6 DNA methylase; KEGG: rba:RB11642 type I restriction enzym, M protein YP_001990515.1 PFAM: restriction modification system DNA specificity domain; KEGG: gur:Gura_2097 restriction modification system DNA specificity domain YP_001990516.1 KEGG: mmr:Mmar10_0163 hypothetical protein YP_001990517.1 PFAM: helix-turn-helix domain protein; KEGG: rle:pRL110239 hypothetical protein YP_001990519.1 KEGG: bja:blr7722 hypothetical protein YP_001990520.1 PFAM: metallophosphoesterase; KEGG: nha:Nham_3779 metallophosphoesterase YP_001990521.1 KEGG: nha:Nham_3781 ATPase AAA YP_001990522.1 PFAM: ATPase AAA; SMART: ATPase AAA; KEGG: nha:Nham_3781 ATPase AAA YP_001990523.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mes:Meso_1173 NADH:flavin oxidoreductase/NADH oxidase YP_001990524.1 PFAM: carboxymuconolactone decarboxylase; KEGG: bvi:Bcep1808_4940 carboxymuconolactone decarboxylase YP_001990525.1 KEGG: azc:AZC_1312 hypothetical protein YP_001990526.1 KEGG: bja:blr0257 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001990527.1 PFAM: response regulator receiver; KEGG: aba:Acid345_3714 response regulator receiver protein YP_001990528.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: azc:AZC_1361 high similarity to two-component response regulator YP_001990529.1 PFAM: alpha/beta hydrolase fold; KEGG: mac:MA0993 chloride peroxidase YP_001990530.1 PFAM: Ferritin Dps family protein; KEGG: bja:bll0290 hypothetical low temperature-induced protein YP_001990531.1 KEGG: bja:bll0289 hypothetical protein YP_001990532.1 PFAM: ATP-binding region ATPase domain protein; KEGG: azc:AZC_1344 sensor protein YP_001990533.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_1314 transcriptional regulator YP_001990534.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bja:bll0302 RNA polymerase subunit YP_001990535.1 KEGG: azc:AZC_1348 oxalate decarboxylase; TIGRFAM: bicupin, oxalate decarboxylase family; PFAM: Cupin domain protein; protein of unknown function DUF1275; cupin YP_001990536.1 PFAM: Camphor resistance CrcB protein; KEGG: bmt:BSUIS_B0810 hypothetical protein YP_001990537.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_001990538.1 PFAM: acriflavin resistance protein; KEGG: bja:blr0277 AcrB/AcrD/AcrF family protein YP_001990539.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:blr0276 hypothetical protein YP_001990540.1 catalyzes the formation of acetate from pyruvate YP_001990541.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: atc:AGR_L_213 hypothetical protein YP_001990542.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: mex:Mext_1976 cytochrome bd ubiquinol oxidase subunit I YP_001990543.1 PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: xau:Xaut_1267 cytochrome d ubiquinol oxidase, subunit II YP_001990544.1 KEGG: mlo:mlr4646 hypothetical protein YP_001990545.1 KEGG: bja:blr0274 hypothetical protein YP_001990546.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_2279 transcriptional regulator YP_001990547.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: mlo:mlr5739 two-component sensor protein YP_001990548.1 KEGG: bra:BRADO7127 conserved hypothetical protein; signal peptide YP_001990549.1 PFAM: fusaric acid resistance protein conserved region; KEGG: azc:AZC_1359 bacterial membrane protein of unknown function YP_001990550.1 PFAM: protein of unknown function DUF1656; KEGG: azc:AZC_1358 hypothetical protein YP_001990551.1 PFAM: secretion protein HlyD family protein; KEGG: azc:AZC_1357 membrane fusion protein YP_001990552.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_1345 transcriptional regulator YP_001990553.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: serine/threonine protein kinase; KEGG: azc:AZC_1344 sensor protein YP_001990554.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_001990555.1 PFAM: protein of unknown function DUF1212; KEGG: azc:AZC_1898 hypothetical protein YP_001990556.1 KEGG: gbe:GbCGDNIH1_1043 hypothetical protein YP_001990557.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_001990558.1 PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120687 hypothetical protein YP_001990559.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: xau:Xaut_3575 L-carnitine dehydratase/bile acid-inducible protein F YP_001990560.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rha:RHA1_ro08153 acyl-CoA dehydrogenase YP_001990561.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: msm:MSMEG_3981 L-carnitine dehydratase/bile acid-inducible protein F YP_001990562.1 PFAM: AMP-dependent synthetase and ligase; KEGG: nca:Noca_4121 AMP-dependent synthetase and ligase YP_001990563.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_001990564.1 PFAM: inner-membrane translocator; KEGG: nca:Noca_4122 inner-membrane translocator YP_001990565.1 PFAM: inner-membrane translocator; KEGG: nca:Noca_4123 inner-membrane translocator YP_001990566.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nca:Noca_4124 ABC transporter YP_001990567.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nca:Noca_4125 ABC transporter YP_001990568.1 PFAM: extracellular ligand-binding receptor; KEGG: nca:Noca_4127 extracellular ligand-binding receptor YP_001990569.1 PFAM: regulatory protein TetR; KEGG: cau:Caur_2221 regulatory protein TetR YP_001990570.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_7140 secretion protein (HlyD family) YP_001990571.1 KEGG: mlo:mll1027 rhizobiocin secretion protein RspD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_001990572.1 PFAM: Hemolysin-type calcium-binding region; Endonuclease/exonuclease/phosphatase; 5'-nucleotidase; KEGG: syp:SYNPCC7002_G0067 endonuclease/exonuclease/phosphatase family YP_001990573.1 PFAM: regulatory protein DeoR; hypothetical protein; KEGG: xcb:XC_0373 glycerol-3-phosphate regulon repressor YP_001990574.1 TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; glycerophosphoryl diester phosphodiesterase; KEGG: amr:AM1_3186 hemolysin-type calcium-binding protein YP_001990575.1 PFAM: Integrase catalytic region; KEGG: bja:blr2054 transposase YP_001990576.1 KEGG: swi:Swit_2460 phage integrase family protein YP_001990578.1 KEGG: eca:ECA1558 sulfate ester transporter periplasmic binding component YP_001990579.1 PFAM: ABC transporter inner membrane protein; KEGG: pfl:PFL_0207 aliphatic sulfonates ABC transporter permease protein YP_001990580.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pau:PA14_02330 BC-type transporter ATP-binding component YP_001990581.1 PFAM: sulfatase; KEGG: bja:blr0426 phosphonate monoester hydrolase YP_001990582.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: bbt:BBta_3673 sulfur oxidation protein (SoxZ) YP_001990583.1 with SoxZ catalyzes the oxidation of sulfur compounds YP_001990584.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome C sulphide dehydrogenase flavin-binding; KEGG: aeh:Mlg_1267 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit YP_001990585.1 KEGG: pna:Pnap_1665 cytochrome C, class I YP_001990586.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pau:PA14_71670 hypothetical protein YP_001990587.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO1409 ABC transporter (ATP binding subunit) YP_001990588.1 PFAM: ABC transporter inner membrane protein; KEGG: ppg:PputGB1_0191 ABC transporter inner membrane protein YP_001990589.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bmu:Bmul_0738 AMP-dependent synthetase and ligase YP_001990590.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: bur:Bcep18194_C6742 2-nitropropane dioxygenase, NPD YP_001990591.1 catalyzes the hydrolysis of allophanate YP_001990592.1 TIGRFAM: urea amidolyase related protein; urea carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rle:pRL90293 UreA amidolyase YP_001990593.1 TIGRFAM: urea carboxylase-associated protein 1; KEGG: rle:pRL90292 hypothetical protein YP_001990594.1 TIGRFAM: urea carboxylase-associated protein 2; KEGG: xau:Xaut_1224 hypothetical protein YP_001990595.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: azc:AZC_4399 ABC transporter ATP-binding protein YP_001990596.1 PFAM: ABC transporter inner membrane protein; KEGG: xau:Xaut_1226 ABC transporter inner membrane protein YP_001990597.1 TIGRFAM: ABC transporter periplasmic binding protein, urea carboxylase region; PFAM: NLPA lipoprotein; KEGG: xau:Xaut_1227 NlpA lipoprotein YP_001990598.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB4711 probable enoyl-CoA hydratase YP_001990599.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_5827 AMP-dependent synthetase and ligase YP_001990600.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: mag:amb2598 transcriptional regulator YP_001990601.1 PFAM: MaoC domain protein dehydratase; KEGG: bbr:BB4767 (R)-specific enoyl-CoA hydratase YP_001990602.1 PFAM: extracellular ligand-binding receptor; KEGG: xau:Xaut_1620 extracellular ligand-binding receptor YP_001990603.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: tle:Tlet_1122 ABC transporter YP_001990604.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: azc:AZC_2113 ABC transporter ATP-binding protein YP_001990605.1 PFAM: inner-membrane translocator; KEGG: bxe:Bxe_C0862 ABC branched chain amino acid family transporter inner membrane subunit YP_001990606.1 PFAM: inner-membrane translocator; KEGG: xau:Xaut_1500 inner-membrane translocator YP_001990607.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: bbt:BBta_p0061 outer membrane copper (silver) and drug transport protein (RND family) YP_001990608.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_3427 cation efflux system protein CusB precursor YP_001990609.1 KEGG: bbt:BBta_3428 exported protein of unknown function YP_001990610.1 KEGG: bbt:BBta_3429 exported protein of unknown function YP_001990611.1 KEGG: mag:amb1850 SRPI protein YP_001990612.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: mag:amb1849 probable cysteine desulfurase 1 YP_001990613.1 KEGG: scl:sce4640 hypothetical protein YP_001990614.1 part of the metNIQ transport system for methionine YP_001990615.1 PFAM: ABC transporter inner membrane protein; KEGG: azc:AZC_3692 ABC transporter permease protein YP_001990616.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bra:BRADO4285 D-methionine ABC transporter protein, periplasmic binding protein YP_001990617.1 KEGG: azo:azo2395 phenylacetate--CoA ligase YP_001990618.1 PFAM: NLPA lipoprotein; KEGG: rru:Rru_A0791 NlpA lipoprotein YP_001990619.1 KEGG: bbt:BBta_2219 hypothetical protein YP_001990620.1 PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: mca:MCA1828 dinitrogenase reductase ADP-ribosyltransferase-like protein YP_001990621.1 KEGG: mma:MM_2842 5-nitroimidazole antibiotic resistance protein YP_001990622.1 KEGG: rru:Rru_A1390 hypothetical protein YP_001990623.1 TIGRFAM: Fe-only nitrogenase accessory protein AnfO; PFAM: Nitrogenase iron-iron accessory protein AnfO; KEGG: rru:Rru_A1391 hypothetical protein YP_001990624.1 KEGG: rru:Rru_A1392 nitrogenase; TIGRFAM: Fe-only nitrogenase, beta subunit; PFAM: oxidoreductase/nitrogenase component 1 YP_001990625.1 KEGG: rru:Rru_A1393 nitrogenase; TIGRFAM: Fe-only nitrogenase, delta subunit; PFAM: Vanadium/alternative nitrogenase delta subunit YP_001990626.1 KEGG: rru:Rru_A1394 nitrogenase iron-iron protein, alpha chain; TIGRFAM: nitrogenase alpha chain; nitrogenase component I, alpha chain; nitrogenase iron-iron protein, alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_001990627.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; alternative NifH, may be molybdenum-independent YP_001990628.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase AAA; SMART: ATPase AAA; KEGG: rru:Rru_A1388 transcriptional regulator, NifA subfamily, fis family YP_001990629.1 KEGG: bja:blr8159 hypothetical protein YP_001990630.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: nha:Nham_2954 aspartate/glutamate/uridylate kinase YP_001990631.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: azc:AZC_3023 aspartate/glutamate/uridylate kinase YP_001990632.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: fal:FRAAL6172 GntR-family transcription regulator YP_001990634.1 KEGG: vei:Veis_3425 oligopeptide/dipeptide ABC transporter ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA YP_001990635.1 KEGG: vei:Veis_3426 oligopeptide/dipeptide ABC transporter ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA YP_001990636.1 PFAM: extracellular solute-binding protein family 5; KEGG: vei:Veis_3427 extracellular solute-binding protein, family 5 YP_001990637.1 PFAM: ABC transporter inner membrane protein; KEGG: vei:Veis_3428 ABC transporter inner membrane protein YP_001990638.1 PFAM: ABC transporter inner membrane protein; KEGG: vei:Veis_3435 ABC transporter inner membrane protein YP_001990639.1 activates fatty acids by binding to coenzyme A YP_001990640.1 PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: bja:bll7292 probable pyruvate carboxylase YP_001990641.1 KEGG: bja:blr2724 hypothetical protein YP_001990642.1 KEGG: bra:BRADO1773 conserved hypothetical protein; signal peptide YP_001990643.1 PFAM: cytochrome C oxidase subunit III; KEGG: bbt:BBta_2086 NorE protein involved in nitric oxide reduction YP_001990644.1 KEGG: dsh:Dshi_3188 nitric oxide reductase F protein YP_001990645.1 KEGG: bov:BOV_A0224 nitric-oxide reductase, small subunit YP_001990646.1 PFAM: cytochrome C oxidase subunit I; KEGG: bja:blr3215 nitric oxide reductase subunit B YP_001990647.1 PFAM: ATPase AAA; CbbQ/NirQ/NorQ domain protein; KEGG: bja:blr3216 NorQ protein YP_001990648.1 PFAM: von Willebrand factor type A; KEGG: bja:blr3217 NorD protein YP_001990649.1 KEGG: sfr:Sfri_0063 hypothetical protein YP_001990650.1 KEGG: azc:AZC_2320 hypothetical protein YP_001990651.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: oan:Oant_4174 cobalamin synthesis protein P47K YP_001990652.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001990653.1 PFAM: peptidase C26; KEGG: bra:BRADO4209 gamma-glutamyl hydrolase family protein YP_001990654.1 PFAM: CBS domain containing protein; Chloride channel core; KEGG: ret:RHE_CH02492 chloride channel protein YP_001990655.1 catalyzes the hydrolysis of allophanate YP_001990656.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bbt:BBta_0723 transcriptional regulatory protein, GntR family YP_001990657.1 KEGG: bra:BRADO6817 hypothetical protein YP_001990658.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001990659.1 KEGG: bbt:BBta_0720 hypothetical protein YP_001990660.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_0719 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein YP_001990661.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:blr1038 ABC transporter permease protein YP_001990662.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:blr1037 ABC transporter permease protein YP_001990663.1 PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_0716 dipeptide/oligopeptide/nickel ABC transporter substrate-binding protein YP_001990666.1 PFAM: extracellular solute-binding protein family 1; KEGG: bra:BRADO5362 conserved hypothetical protein; ABC-type Fe3+ transport system; exported protein YP_001990667.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_5853 permease protein YP_001990668.1 PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO5360 molybdenum transport system permease protein ModB; exported protein YP_001990669.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: bbt:BBta_5851 ATP binding protein (ABC superfamily, atp_bind) YP_001990670.1 PFAM: metallophosphoesterase; KEGG: bra:BRADO5358 hypothetical protein YP_001990671.1 PFAM: response regulator receiver; KEGG: mlo:mll2300 probable response regulator YP_001990672.1 KEGG: bja:blr6127 hypothetical protein YP_001990673.1 PFAM: FAD dependent oxidoreductase; KEGG: rle:RL1363 oxidoreductase YP_001990674.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_001990675.1 PFAM: NnrUfamily protein; KEGG: sil:SPO1134 NnrU family protein YP_001990676.1 PFAM: NnrS family protein; KEGG: bbt:BBta_6821 membrane protein, NnrS-like protein YP_001990677.1 KEGG: ace:Acel_0511 hypothetical protein YP_001990678.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr2779 hypothetical protein YP_001990679.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bbt:BBta_3079 two-component transcriptional regulator, LuxR family YP_001990680.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: bbt:BBta_3080 bacteriophytochrome YP_001990681.1 PFAM: antenna complex alpha/beta subunit; KEGG: bbt:BBta_3081 light harvesting protein B-800-850 YP_001990682.1 PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1408 antenna complex, alpha/beta subunit YP_001990683.1 PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: bbt:BBta_3083 PucC, chlorophyll major facilitator superfamily (MFS) exporter YP_001990684.1 KEGG: bbt:BBta_3084 hypothetical protein YP_001990685.1 KEGG: nve:NEMVE_v1g94016 predicted protein Pfam: Extensin_2 PROSITE: LEU_RICH PRO_RICH YP_001990686.1 PFAM: FAD dependent oxidoreductase; KEGG: bbt:BBta_0651 flavin-containing monooxygenase YP_001990687.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:blr1515 RND multidrug efflux membrane permease YP_001990688.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bja:blr1516 RND multidrug efflux transporter YP_001990689.1 KEGG: bra:BRADO6559 hypothetical protein YP_001990690.1 PFAM: conserved hypothetical protein; KEGG: bra:BRADO4339 conserved hypothetical protein; ribonucleotide reductase YP_001990691.1 PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: rru:Rru_A0937 coenzyme F420 hydrogenase/dehydrogenase beta subunit-like YP_001990692.1 PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: rde:RD1_4107 hypothetical protein YP_001990693.1 KEGG: hha:Hhal_1627 dienelactone hydrolase YP_001990694.1 KEGG: nha:Nham_1076 hypothetical protein YP_001990695.1 KEGG: bra:BRADO1874 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_001990696.1 KEGG: bbt:BBta_6449 magnesium-chelatase 38 kDa subunit; TIGRFAM: magnesium chelatase ATPase subunit I; PFAM: magnesium chelatase ChlI subunit; SMART: ATPase AAA YP_001990697.1 involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; part of a complex with BchI, BchD, and BchH YP_001990698.1 PFAM: type IV pilus assembly PilZ; KEGG: bra:BRADO5217 hypothetical protein YP_001990699.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_001990700.1 PFAM: alpha/beta hydrolase fold; KEGG: bbt:BBta_6447 alpha/beta hydrolase fold YP_001990701.1 KEGG: bbt:BBta_6446 alpha/beta hydrolase, protoporphyrin IX magnesium chelatase BchO-like protein; TIGRFAM: magnesium chelatase accessory protein; PFAM: alpha/beta hydrolase fold YP_001990702.1 TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bra:BRADO1610 phytoene dehydrogenase (phytoene desaturase) YP_001990703.1 PFAM: Squalene/phytoene synthase; KEGG: rru:Rru_A0494 squalene/phytoene synthase YP_001990704.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_001990705.1 PFAM: UspA domain protein; KEGG: mrd:Mrad2831_0427 UspA domain protein YP_001990706.1 KEGG: bra:BRADO1612 hypothetical protein YP_001990707.1 KEGG: bbt:BBta_6443 hypothetical protein YP_001990708.1 PFAM: hydroxyneurosporene synthase; KEGG: bbt:BBta_6442 neurosporene and anhydrorhodovibrin hydratase YP_001990709.1 TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bra:BRADO1614 hydroxyneurosporene and rhodopin dehydrogenase YP_001990710.1 PFAM: polyprenyl synthetase; KEGG: bra:BRADO1615 geranylgeranyl pyrophosphate synthetase (GgpP synthetase) (farnesyltranstransferase) YP_001990711.1 PFAM: O-methyltransferase family 2; methyltransferase type 12; KEGG: rru:Rru_A2982 O-methyltransferase, family 2 YP_001990712.1 TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rru:Rru_A2981 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide YP_001990713.1 KEGG: mrd:Mrad2831_2818 chlorophyllide reductase iron protein subunit X; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein YP_001990714.1 TIGRFAM: chlorophyllide reductase subunit Y; KEGG: bbt:BBta_6436 bacteriochlorophyllide reductase subunit 52.5 kDa chain YP_001990715.1 TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1; protein of unknown function DUF1197; KEGG: bra:BRADO1620 bacteriochlorophyllide reductase Z subunit YP_001990717.1 PFAM: antenna complex alpha/beta subunit; KEGG: bbt:BBta_6433 light harvesting 1 beta subunit YP_001990718.1 PFAM: antenna complex alpha/beta subunit; KEGG: bra:BRADO1623 light harvesting 1 alpha subunit YP_001990719.1 TIGRFAM: photosynthetic reaction center L subunit; PFAM: photosynthetic reaction centre protein; KEGG: bbt:BBta_6431 photosynthetic reaction center L subunit YP_001990720.1 TIGRFAM: photosynthetic reaction center, M subunit; PFAM: photosynthetic reaction centre protein; KEGG: bra:BRADO1625 photosynthetic reaction center M protein YP_001990721.1 KEGG: bbt:BBta_6421 transcriptional regulatory protein, HTH fis-type family; TIGRFAM: transcriptional regulator PpsR; PFAM: helix-turn-helix Fis-type; PAS fold domain protein; SMART: PAS domain containing protein YP_001990722.1 TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: mex:Mext_4820 bacteriochlorophyll/chlorophyll synthetase YP_001990723.1 PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: bbt:BBta_6423 light harvesting pigment major facilitator family (MFS) transporter Bch2-like protein YP_001990724.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bra:BRADO1632 geranylgeranyl reductase YP_001990725.1 PFAM: TspO/MBR family protein; KEGG: mpt:Mpe_A2778 tryptophan-rich sensory protein YP_001990726.1 KEGG: bbt:BBta_6425 hypothetical protein YP_001990727.1 PFAM: cytochrome C class I; KEGG: bra:BRADO1630 cytochrome C2 YP_001990728.1 KEGG: bra:BRADO1629 transcriptional regulator PpsR2; fis family; TIGRFAM: transcriptional regulator PpsR; PFAM: helix-turn-helix Fis-type; PAS fold domain protein; SMART: PAS domain containing protein YP_001990729.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: bbt:BBta_6428 bacteriophytochrome YP_001990730.1 PFAM: Haem oxygenase-like; KEGG: bra:BRADO1626 heme oxygenase YP_001990731.1 PFAM: cobalamin B12-binding domain protein; KEGG: bbt:BBta_6420 regulator with a cobalamin (vitamin B12)-binding domain, AerR-like protein YP_001990732.1 PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: bra:BRADO1638 2-vinyl bacteriochlorophyllide hydratase YP_001990733.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_001990734.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_001990735.1 involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; the enzyme from Rhodobacter capsulatus contains an Fe-S cluster; part of a complex with BchI, BchD, and BchH YP_001990736.1 light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production YP_001990737.1 catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine YP_001990738.1 PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: bra:BRADO1644 photosynthetic complex (LH1) assembly protein LhaA, major facilitator superfamily (MFS) transporter YP_001990739.1 TIGRFAM: photosynthetic reaction center H subunit; PFAM: PRC-barrel domain protein; Photosynthetic reaction centre H subunit; KEGG: bbt:BBta_6411 reaction center protein H chain (photosynthetic reaction center H subunit) YP_001990740.1 KEGG: mex:Mext_4809 photosynthetic complex assembly protein YP_001990741.1 TIGRFAM: photosynthetic complex assembly protein; KEGG: bbt:BBta_6409 hypothetical protein YP_001990742.1 KEGG: mex:Mext_4807 hypothetical protein YP_001990743.1 oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis YP_001990744.1 TIGRFAM: photosynthetic complex assembly protein 2; KEGG: bra:BRADO1650 hypothetical protein YP_001990745.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_001990746.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nha:Nham_3755 transcriptional regulator, LysR family YP_001990747.1 PFAM: response regulator receiver; KEGG: mlo:mlr6690 two-component response regulator YP_001990748.1 PFAM: response regulator receiver; KEGG: mac:MA4377 sensory transduction histidine kinase YP_001990749.1 KEGG: xac:XAC2492 two-component system sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001990750.1 type III RuBisCO; involved in carbon fixation YP_001990751.1 PFAM: ribulose bisphosphate carboxylase small chain; KEGG: bbt:BBta_6396 ribulose bisphosphate carboxylase small chain (RuBisCO small subunit) YP_001990752.1 KEGG: bra:BRADO1661 CbbX-like protein, containing AAA-ATPase domain; TIGRFAM: CbbX protein; PFAM: ATPase AAA; SMART: ATPase AAA YP_001990753.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rle:pRL80074 LysR-family transcriptional regulator YP_001990754.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mex:Mext_1157 nitrilase YP_001990755.1 KEGG: mpt:Mpe_A3673 UreA/short-chain amide transport system substrate-binding protein YP_001990756.1 PFAM: inner-membrane translocator; KEGG: nha:Nham_2810 inner-membrane translocator YP_001990757.1 PFAM: inner-membrane translocator; ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2809 ABC transporter YP_001990758.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2808 ABC transporter YP_001990759.1 PFAM: alpha/beta hydrolase fold; KEGG: bra:BRADO4874 conserved hypothetical protein; alpha/beta hydrolase fold-containing protein YP_001990760.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol YP_001990761.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: bra:BRADO6986 peptidase S9A family; protease II YP_001990762.1 PFAM: dihydrodipicolinate synthetase; KEGG: bja:bll7272 dihydrodipicolinate synthase YP_001990763.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bja:bll7271 carbon monoxide dehydrogenase large chain YP_001990764.1 PFAM: LemA family protein; KEGG: bja:bll7267 probable lipoprotein YP_001990765.1 PFAM: protein of unknown function DUF477; KEGG: bbt:BBta_6688 membrane protein of unknown function YP_001990766.1 PFAM: protein of unknown function DUF477; KEGG: nha:Nham_3400 protein of unknown function DUF477 YP_001990767.1 PFAM: glutathione S-transferase domain; KEGG: pla:Plav_3102 glutathione S-transferase domain YP_001990768.1 KEGG: bja:bll7264 hypothetical protein YP_001990769.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding protein; KEGG: bja:blr3195 ferredoxin NADP+ reductase YP_001990770.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbt:BBta_6680 acyl-coenzyme A transferase YP_001990771.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain YP_001990772.1 KEGG: nha:Nham_3397 hypothetical protein YP_001990773.1 PFAM: ferredoxin; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bra:BRADO1430 ferredoxin:adenylate/guanylate cyclase YP_001990774.1 PFAM: conserved hypothetical protein; KEGG: bra:BRADO1432 hypothetical protein YP_001990775.1 PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: nwi:Nwi_3019 YcjX-like protein YP_001990776.1 PFAM: Hly-III family protein; KEGG: bbt:BBta_6673 hemmolysin III, HlyIII family YP_001990777.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:bll7251 dehydrogenase YP_001990778.1 KEGG: nha:Nham_2128 hypothetical protein YP_001990779.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bra:BRADO2796 L-allo-threonine aldolase YP_001990780.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001990781.1 KEGG: bja:blr5705 hypothetical protein YP_001990782.1 PFAM: cupin; KEGG: bja:blr5704 hypothetical protein YP_001990783.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_001990784.1 PFAM: thioesterase superfamily protein; KEGG: bra:BRADO2784 conserved hypothetical protein; thioesterase superfamily YP_001990785.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_001990786.1 SMART: TIR protein; KEGG: xac:XAC3296 hypothetical protein YP_001990788.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001990789.1 PFAM: acyltransferase 3; KEGG: bbt:BBta_5400 membrane protein of unknown function with acyltransferase family protein domain YP_001990790.1 PFAM: protein of unknown function DUF427; KEGG: bbt:BBta_5398 hypothetical protein YP_001990791.1 PFAM: BolA family protein; KEGG: bja:bsl5715 hypothetical protein YP_001990792.1 PFAM: regulatory protein MarR; KEGG: bja:blr4984 transcriptional regulatory protein YP_001990793.1 KEGG: nha:Nham_4529 hypothetical protein YP_001990794.1 KEGG: mrd:Mrad2831_4407 hypothetical protein YP_001990795.1 PFAM: fatty acid desaturase; KEGG: nha:Nham_1170 fatty acid desaturase YP_001990796.1 TIGRFAM: methyltransferase; KEGG: nha:Nham_1639 hypothetical protein YP_001990797.1 PFAM: protein of unknown function DUF323; KEGG: bbt:BBta_5394 exported protein of unknown function YP_001990798.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: bra:BRADO2793 glutaredoxin family protein YP_001990799.1 PFAM: Appr-1-p processing domain protein; KEGG: bja:bll5710 hypothetical protein YP_001990800.1 PFAM: beta-lactamase; KEGG: bja:bll5709 hypothetical protein YP_001990801.1 catalyzes the formation of benzaldehyde from benzoylformate YP_001990802.1 KEGG: bra:BRADO1440 hypothetical protein YP_001990803.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bra:BRADO1441 formyl-coenzyme A transferase NAD(P)-binding YP_001990804.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bra:BRADO1442 acyl-CoA dehydrogenase YP_001990805.1 PFAM: cytochrome P450; KEGG: bja:blr7243 cytochrome P450 YP_001990806.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_6658 isovaleryl-CoA dehydrogenase YP_001990807.1 PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: rle:RL3009 methyltransferase YP_001990808.1 KEGG: bbt:BBta_6655 exported protein of unknown function YP_001990809.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bbt:BBta_6654 exported protein of unknown function YP_001990810.1 thiamine-pyrophosphate requiring enzyme YP_001990811.1 KEGG: bja:bll7047 hypothetical protein YP_001990813.1 KEGG: bja:bll2188 hypothetical protein YP_001990814.1 PFAM: conserved hypothetical protein; KEGG: bja:bll2189 hypothetical protein YP_001990815.1 KEGG: nha:Nham_3379 hypothetical protein YP_001990816.1 PFAM: inositol monophosphatase; KEGG: nwi:Nwi_0518 inositol monophosphatase YP_001990817.1 KEGG: bja:blr2191 hypothetical protein YP_001990818.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: bbt:BBta_0524 chemotaxis protein CheA YP_001990819.1 PFAM: CheW domain protein; KEGG: bra:BRADO1474 chemotaxis protein CheW YP_001990820.1 PFAM: response regulator receiver; KEGG: bra:BRADO1475 chemotaxis protein CheY YP_001990821.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_001990822.1 PFAM: MCP methyltransferase CheR-type; KEGG: nha:Nham_3372 MCP methyltransferase, CheR-type YP_001990823.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_3371 two component transcriptional regulator, winged helix family YP_001990824.1 involved in type III protein export during flagellum assembly YP_001990825.1 TIGRFAM: flagellar export protein FliJ; KEGG: bra:BRADO1499 flagelar FliJ protein YP_001990826.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bra:BRADO1500 RNA polymerase ECF-type sigma factor YP_001990827.1 KEGG: bbt:BBta_6529 hypothetical protein YP_001990828.1 KEGG: bbt:BBta_6528 exported protein of unknown function YP_001990829.1 membrane protein involved in the flagellar export apparatus YP_001990830.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr2214 hypothetical protein YP_001990831.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bra:BRADO2556 sensory transducer protein; signal peptide YP_001990832.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mlo:mlr6727 transcriptional regulator YP_001990833.1 TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; Hemerythrin HHE cation binding domain protein; KEGG: nwi:Nwi_1658 diguanylate cyclase YP_001990835.1 PFAM: iron permease FTR1; KEGG: bcs:BCAN_B0386 ferrous iron permease EfeU YP_001990836.1 PFAM: transglutaminase domain protein; KEGG: abo:ABO_0204 hypothetical protein YP_001990838.1 KEGG: nha:Nham_2805 hypothetical protein YP_001990839.1 PFAM: alpha/beta hydrolase fold; KEGG: bra:BRADO6133 alpha/beta hydrolase; haloalkane dehalogenase YP_001990840.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xau:Xaut_4226 efflux transporter RND family, MFP subunit YP_001990841.1 PFAM: protein of unknown function DUF214; KEGG: bbt:BBta_1848 lipoprotein-releasing system transmembrane protein LolC YP_001990842.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: xau:Xaut_4228 ABC transporter YP_001990843.1 KEGG: bja:blr4312 hypothetical protein YP_001990844.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mrd:Mrad2831_3689 protein of unknown function DUF1078 domain protein YP_001990846.1 KEGG: sde:Sde_0514 hypothetical protein YP_001990847.1 KEGG: sde:Sde_0513 D-tyrosyl-tRNA(Tyr) deacylase YP_001990848.1 KEGG: rle:pRL100171 rhizosphere induced protein YP_001990849.1 KEGG: bra:BRADO3674 hypothetical protein YP_001990850.1 PFAM: aldo/keto reductase; KEGG: bbt:BBta_0931 oxidoreductase (aldo/keto reductase) YP_001990851.1 KEGG: bja:bll2304 probable ABC transporter substrate-binding protein YP_001990852.1 PFAM: high-affinity nickel-transporter; KEGG: sal:Sala_3212 high-affinity nickel-transporter YP_001990853.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: nha:Nham_2861 diguanylate cyclase (GGDEF domain) YP_001990854.1 KEGG: bja:blr5311 probable histon H1 YP_001990855.1 TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: azc:AZC_1071 hypothetical protein YP_001990856.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: bbt:BBta_4024 hypothetical protein YP_001990857.1 KEGG: bbt:BBta_0206 copper-transporting P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein YP_001990858.1 PFAM: protein of unknown function DUF156; KEGG: bbt:BBta_0207 hypothetical protein YP_001990859.1 KEGG: nha:Nham_0414 hypothetical protein YP_001990860.1 KEGG: vvy:VV1588 hypothetical protein; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B YP_001990861.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bra:BRADO6298 glyoxalase/bleomycin resistance protein/dioxygenase domain YP_001990863.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001990864.1 TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase 4VR; KEGG: bra:BRADO1653 4-vinyl protochlorophyllide reductase (bacteriochlorophyll synthase 23 kDa chain) (4-vinyl reductase) YP_001990865.1 KEGG: bbt:BBta_6404 Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD subunit; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001990866.1 KEGG: bbt:BBta_0349 hypothetical protein YP_001990867.1 PFAM: metallophosphoesterase; KEGG: bja:bll5683 probable serine/threonine phosphatase YP_001990868.1 PFAM: UspA domain protein; Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: bbt:BBta_5336 serine/threonine protein kinase YP_001990869.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: nha:Nham_1909 transport-associated YP_001990870.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: pna:Pnap_4497 fructose-6-phosphate phosphoketolase YP_001990871.1 PFAM: response regulator receiver; KEGG: bbt:BBta_0529 response regulator receiver protein YP_001990872.1 KEGG: bbt:BBta_1536 methyl-accepting chemotaxis protein with PAS domain; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001990873.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: bbt:BBta_0524 chemotaxis protein CheA YP_001990874.1 PFAM: CheW domain protein; KEGG: bra:BRADO1474 chemotaxis protein CheW YP_001990875.1 PFAM: MCP methyltransferase CheR-type; KEGG: bja:bll0390 protein-glutamate O-methyltransferase YP_001990876.1 KEGG: bra:BRADO6999 hypothetical protein YP_001990877.1 PFAM: EAL domain protein; response regulator receiver; KEGG: rru:Rru_A3494 diguanylate phosphodiesterase (EAL domain) with response regulator receiver modulation YP_001990878.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: bra:BRADO7010 sensor histidine kinase with a response regulator receiver domain and a phosphotransferase (HPt) domain YP_001990879.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bra:BRADO6997 two-component transcriptional regulator, LuxR family YP_001990880.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_1210 3-oxoacyl-(acyl-carrier-protein) reductase YP_001990881.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO6422 short-chain dehydrogenase/reductase protein; 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) YP_001990882.1 TIGRFAM: polymorphic outer membrane protein; outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: nha:Nham_3087 outer membrane autotransporter barrel YP_001990883.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bra:BRADO6420 glucose-methanol-choline oxidoreductase family protein YP_001990884.1 PFAM: Aldehyde Dehydrogenase_; KEGG: bja:blr7884 probable coniferyl aldehyde dehydrogenase YP_001990885.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nwi:Nwi_0836 GCN5-related N-acetyltransferase YP_001990887.1 KEGG: bja:bll7778 hypothetical protein YP_001990888.1 KEGG: nwi:Nwi_0912 hypothetical protein YP_001990889.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bja:blr7776 probable cation efflux system protein YP_001990890.1 PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A1891 permease of the major facilitator superfamily YP_001990891.1 PFAM: manganese and iron superoxide dismutase; KEGG: bra:BRADO6273 superoxide dismutase, iron/manganese cofactor YP_001990892.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_001990893.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bbr:BB0428 probable transcriptional regulator YP_001990894.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: azc:AZC_3390 hypothetical protein YP_001990895.1 PFAM: CinA domain protein; KEGG: bja:blr7909 hypothetical protein YP_001990896.1 PFAM: protein of unknown function DUF81; KEGG: bja:blr6618 hypothetical protein YP_001990897.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:bll7899 acyl-CoA dehydrogenase YP_001990898.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001990899.1 KEGG: nha:Nham_2429 hypothetical protein YP_001990900.1 activates fatty acids by binding to coenzyme A YP_001990901.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001990902.1 PFAM: regulatory protein TetR; KEGG: bja:bll7805 transcriptional regulatory protein YP_001990903.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll7804 3-hydroxyacyl-CoA dehydrogenase type II YP_001990904.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbt:BBta_7120 enoyl-CoA hydratase YP_001990905.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bra:BRADO0933 acyl-CoA synthetase YP_001990906.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:bll7801 dehydrogenase YP_001990907.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:bll7800 acyl-CoA dehydrogenase YP_001990908.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bra:BRADO0936 acyl-CoA dehydrogenase YP_001990909.1 PFAM: nitroreductase; KEGG: bbt:BBta_7115 hypothetical protein YP_001990910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr7857 3-hydroxybutyryl-CoA dehydratase YP_001990911.1 PFAM: cyclic nucleotide-binding; KEGG: bbt:BBta_7109 hypothetical protein YP_001990912.1 KEGG: nha:Nham_0653 hypothetical protein YP_001990913.1 KEGG: nha:Nham_0654 hypothetical protein YP_001990914.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aeh:Mlg_2511 diguanylate cyclase with PAS/PAC sensor YP_001990915.1 KEGG: sil:SPO0412 hypothetical protein YP_001990916.1 KEGG: nha:Nham_0655 hypothetical protein YP_001990917.1 PFAM: protein of unknown function UPF0153; KEGG: bra:BRADO0949 hypothetical protein YP_001990918.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bja:bll7835 hypothetical protein YP_001990919.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:blr7836 transcriptional regulatory protein YP_001990920.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: bbt:BBta_2936 alkylated DNA repair protein AlkB YP_001990921.1 TIGRFAM: phenylacetate-CoA ligase; KEGG: bja:blr2897 phenylacetate-coenzyme A ligase YP_001990922.1 TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: bra:BRADO2525 phenylacetic acid degradation protein with thioesterase/thiol ester dehydrase-isomerase domain YP_001990923.1 catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA YP_001990924.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr2898 zinc binding dehydrogenase YP_001990926.1 PFAM: RES domain protein; KEGG: spc:Sputcn32_3793 hypothetical protein YP_001990927.1 PFAM: fatty acid desaturase; KEGG: ccr:CC_3422 hypothetical protein YP_001990928.1 PFAM: OsmC family protein; KEGG: bja:bll2902 hypothetical protein YP_001990929.1 PFAM: oxidoreductase molybdopterin binding; KEGG: bbt:BBta_2875 hypothetical protein YP_001990930.1 PFAM: cytochrome P450; KEGG: nha:Nham_2693 cytochrome P450 YP_001990931.1 KEGG: bja:bsl2906 probable ferredoxin YP_001990932.1 PFAM: Amidase; KEGG: bra:BRADO2532 amidotransferase YP_001990933.1 PFAM: SbmABacA family protein; ABC transporter; KEGG: bra:BRADO1574 ABC transporter-like YP_001990934.1 KEGG: bja:blr4657 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1 YP_001990935.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_2878 short chain dehydrogenase YP_001990936.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr6445 ABC transporter ATP-binding protein YP_001990937.1 PFAM: inner-membrane translocator; KEGG: bja:blr6444 ABC transporter permease protein YP_001990938.1 PFAM: inner-membrane translocator; KEGG: bja:blr6443 ABC transporter permease protein YP_001990939.1 PFAM: extracellular ligand-binding receptor; KEGG: bja:blr6446 ABC transporter substrate-binding protein YP_001990940.1 KEGG: bja:blr2916 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_001990941.1 KEGG: bur:Bcep18194_A5663 DNA translocase FtsK YP_001990942.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bbt:BBta_2880 phosphoglycerate dehydrogenase YP_001990943.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_001990944.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll2920 transcriptional regulatory protein YP_001990945.1 PFAM: protein of unknown function DUF1445; KEGG: bra:BRADO2538 hypothetical protein YP_001990946.1 PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO2539 branched-chain amino acid ABC transporter (substrate-binding protein) YP_001990947.1 PFAM: inner-membrane translocator; KEGG: bja:blr2923 amino acid ABC transporter permease protein YP_001990948.1 PFAM: inner-membrane translocator; KEGG: bbt:BBta_2886 ABC transporter permiase component YP_001990949.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr2925 amino acid ABC transporter ATP-binding protein YP_001990950.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO2543 high-affinity branched-chain amino acid transport protein (ABC transporter ATP-binding protein) YP_001990951.1 PFAM: xylose isomerase; KEGG: bja:blr2929 hypothetical protein YP_001990952.1 PFAM: acriflavin resistance protein; KEGG: bja:blr2934 probable cation efflux protein YP_001990953.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:blr2935 hypothetical protein YP_001990954.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001990955.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_2917 reductase YP_001990956.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001990957.1 PFAM: aminoglycoside phosphotransferase; KEGG: bbt:BBta_2919 hypothetical protein YP_001990958.1 KEGG: bra:BRADO2573 hypothetical protein YP_001990959.1 KEGG: azo:azo2629 hypothetical protein YP_001990960.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001990961.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bra:BRADO2575 acyl-CoA dehydrogenase YP_001990962.1 activates fatty acids by binding to coenzyme A YP_001990963.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO2577 oxidoreductase YP_001990964.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001990965.1 activates fatty acids by binding to coenzyme A YP_001990966.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: bja:bll4276 two-component hybrid sensor and regulator YP_001990967.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_2659 transcriptional regulator, LysR family YP_001990968.1 PFAM: conserved hypothetical protein; KEGG: bra:BRADO0268 hypothetical protein YP_001990969.1 KEGG: nha:Nham_4237 hypothetical protein YP_001990970.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_001990971.1 PFAM: small multidrug resistance protein; KEGG: cbd:COXBU7E912_0802 quaternary ammonium compound-resistance protein QacE YP_001990972.1 KEGG: spb:M28_Spy0864 hypothetical protein YP_001990974.1 PFAM: OmpA/MotB domain protein; KEGG: bra:BRADO2722 conserved hypothetical protein; outer membrane protein and related peptidoglycan-associated (LipO)proteins YP_001990975.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO2583 short-chain dehydrogenase YP_001990976.1 KEGG: bra:BRADO2584 hypothetical protein YP_001990977.1 PFAM: protein of unknown function DUF35; KEGG: bja:bll2959 hypothetical protein YP_001990978.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001990979.1 KEGG: bja:blr2961 hypothetical protein YP_001990980.1 PFAM: thioesterase superfamily protein; KEGG: pla:Plav_2272 thioesterase superfamily protein YP_001990981.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_001990982.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:blr7839 probable substrate-binding protein YP_001990983.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bra:BRADO0957 TrapT family, DctQ subunit, C4-dicarboxylate transport YP_001990984.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:blr7841 hypothetical protein YP_001990985.1 KEGG: bja:blr7842 hypothetical protein YP_001990986.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001990987.1 catalyzes the conversion of ferulic acid to feruloyl-CoA YP_001990988.1 PFAM: thioesterase superfamily protein; KEGG: bbt:BBta_7090 4-hydroxybenzoyl-CoA thioesterase YP_001990989.1 PFAM: extracellular ligand-binding receptor; KEGG: bbt:BBta_7089 branched-chain amino acid transport protein YP_001990990.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: reu:Reut_B3994 GGDEF YP_001990991.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr7834 ABC transporter ATP-binding protein YP_001990992.1 PFAM: inner-membrane translocator; ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO0970 ABC tranpsorter, permease protein (N-ter) and ATP-binding protein (C-ter); branched-chain amino acid transport protein YP_001990993.1 PFAM: inner-membrane translocator; KEGG: bra:BRADO0971 ABC transporter permease protein; branched-chain amino acid transport protein YP_001990994.1 PFAM: regulatory protein MarR; KEGG: bbt:BBta_7084 transcriptional regulator, MarR family YP_001990995.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: bja:blr2614 hypothetical protein YP_001990996.1 KEGG: bja:bll2613 hypothetical protein YP_001990997.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bja:bll7624 probable adenylate cyclase YP_001990998.1 PFAM: MOFRL domain protein; KEGG: nha:Nham_0659 hydroxypyruvate reductase YP_001990999.1 PFAM: extracellular ligand-binding receptor; KEGG: bja:blr7827 ABC transporter substrate-binding protein YP_001991000.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: bbt:BBta_2983 uracil-DNA glycosylase YP_001991001.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: nwi:Nwi_2258 elongator protein 3/MiaB/NifB YP_001991002.1 KEGG: bbt:BBta_2985 hypothetical protein YP_001991003.1 KEGG: nha:Nham_2667 hypothetical protein YP_001991004.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase. YP_001991005.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sen:SACE_4472 NAD-dependent epimerase/dehydratase YP_001991006.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: scl:sce0177 transcriptional regulator, LysR family YP_001991007.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr3030 hypothetical protein YP_001991008.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_2988 exported protein of unknown function YP_001991009.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: bbt:BBta_2989 cation/heavy metal efflux system protein YP_001991010.1 KEGG: bbt:BBta_5457 hypothetical protein YP_001991011.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: bbt:BBta_3004 outer TolC membrane protein YP_001991012.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:bll3036 enoyl CoA hydratase YP_001991013.1 KEGG: bja:bll3037 hypothetical protein YP_001991014.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001991015.1 PFAM: protein of unknown function DUF1109; KEGG: bbt:BBta_3008 membrane protein of unknown function YP_001991016.1 KEGG: xau:Xaut_0421 hypothetical protein YP_001991017.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_2201 TonB-dependent receptor YP_001991018.1 KEGG: nha:Nham_2660 hypothetical protein YP_001991019.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bbt:BBta_3010 membrane protein of unknown function with diguanylate cyclase domain (GGDEF domain) YP_001991020.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001991021.1 KEGG: bbt:BBta_3012 hypothetical protein YP_001991022.1 KEGG: nwi:Nwi_2244 hypothetical protein YP_001991023.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:blr2506 chemotaxis protein YP_001991025.1 PFAM: TonB-dependent receptor; KEGG: azc:AZC_1341 TonB dependent receptor YP_001991026.1 KEGG: ngo:NGO1701 hypothetical protein YP_001991027.1 PFAM: type IV pilus assembly PilZ; KEGG: nha:Nham_1523 hypothetical protein YP_001991028.1 KEGG: bja:bll3046 hypothetical protein YP_001991029.1 KEGG: bbt:BBta_5165 hypothetical protein YP_001991030.1 PFAM: peptidase C15 pyroglutamyl peptidase I; KEGG: nwi:Nwi_2241 peptidase C15, pyroglutamyl peptidase I YP_001991031.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins YP_001991032.1 KEGG: nha:Nham_0910 carbonic anhydrase YP_001991033.1 KEGG: nha:Nham_0910 carbonic anhydrase YP_001991034.1 KEGG: bja:bll3052 hypothetical protein YP_001991035.1 PFAM: PilT protein domain protein; KEGG: rca:Rcas_4442 PilT protein domain protein YP_001991036.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: mpt:Mpe_A3784 hypothetical protein YP_001991037.1 MDM; functions in conversion of succinate to propionate YP_001991038.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bja:bll3055 hypothetical protein YP_001991039.1 PFAM: methylmalonyl-CoA mutase; KEGG: bja:bll3056 probable methylmalonyl-CoA mutase small subunit YP_001991040.1 KEGG: nha:Nham_2635 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_001991041.1 TIGRFAM: dihydroneopterin aldolase; KEGG: bra:BRADO2684 dihydroneopterin aldolase (DhnA) YP_001991042.1 KEGG: nha:Nham_2633 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_001991043.1 KEGG: nwi:Nwi_2232 hypothetical protein YP_001991044.1 KEGG: bja:bll3061 hypothetical protein YP_001991045.1 PFAM: protein of unknown function DUF853 NPT hydrolase KEGG: bra:BRADO2688 conserved hypothetical protein; ATPase YP_001991046.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: nha:Nham_2629 hypothetical protein YP_001991047.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dac:Daci_1878 TonB-dependent siderophore receptor YP_001991048.1 KEGG: dac:Daci_3884 hypothetical protein YP_001991049.1 KEGG: dac:Daci_0273 hypothetical protein YP_001991050.1 KEGG: dac:Daci_0272 PepSY-associated TM helix domain protein YP_001991051.1 KEGG: xcb:XC_0260 hypothetical protein YP_001991052.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_5044 methyl-accepting chemotaxis receptor/sensory transducer YP_001991053.1 PFAM: class II aldolase/adducin family protein; KEGG: bra:BRADO2701 hypothetical protein YP_001991054.1 KEGG: bja:blr3067 hypothetical protein YP_001991055.1 PFAM: ROSMUCR transcriptional regulator; KEGG: nha:Nham_2627 transcriptional regulator, MucR family YP_001991056.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_3419 short-chain dehydrogenase/reductase SDR YP_001991057.1 PFAM: regulatory protein TetR; KEGG: rle:RL0480 TetR family transcriptional regulator YP_001991058.1 KEGG: nwi:Nwi_2226 ATPase involved in DNA replication initiation YP_001991059.1 PFAM: Fe-S metabolism associated SufE; KEGG: bbt:BBta_3043 SufE-like protein YP_001991060.1 KEGG: bra:BRADO2707 hypothetical protein YP_001991061.1 KEGG: nha:Nham_2623 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein YP_001991062.1 PFAM: peptidoglycan-binding domain 1 protein; KEGG: bja:blr3072 hypothetical protein YP_001991063.1 PFAM: protein of unknown function DUF1491; KEGG: bja:blr3074 hypothetical protein YP_001991064.1 KEGG: nha:Nham_1399 hypothetical protein YP_001991065.1 PFAM: polysaccharide deacetylase; KEGG: nha:Nham_1255 polysaccharide deacetylase YP_001991066.1 KEGG: bja:blr5578 hypothetical protein YP_001991067.1 KEGG: bbt:BBta_3049 hypothetical protein YP_001991068.1 KEGG: bbt:BBta_3050 exported protein of unknown function YP_001991069.1 KEGG: bra:BRADO2716 conserved hypothetical protein; signal peptide YP_001991070.1 PFAM: protein of unknown function DUF1214; KEGG: bra:BRADO2717 conserved hypothetical protein; signal peptide YP_001991071.1 KEGG: bra:BRADO2718 penicillin-binding protein (MrcA-like); TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001991072.1 PFAM: protein of unknown function UPF0153; KEGG: bja:blr3103 hypothetical protein YP_001991073.1 PFAM: protein of unknown function DUF81; KEGG: bcm:Bcenmc03_5380 protein of unknown function DUF81 YP_001991074.1 PFAM: regulatory protein MarR; KEGG: bja:bll1047 transcriptional regulatory protein YP_001991075.1 PFAM: cytochrome P450; KEGG: bbt:BBta_0729 cytochrome P450 YP_001991076.1 PFAM: ferredoxin; KEGG: bja:blr1049 ferrodoxin YP_001991077.1 KEGG: bja:blr1050 branched chain amino acid transport system substrate binding protein YP_001991078.1 KEGG: bpt:Bpet2624 hypothetical protein YP_001991079.1 PFAM: PepSY-associated TM helix domain protein; KEGG: bbt:BBta_2666 uncharacterized iron-regulated membrane protein YP_001991080.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rru:Rru_A2395 TonB-dependent siderophore receptor YP_001991081.1 PFAM: beta-lactamase; KEGG: bra:BRADO4091 beta-lactamase family protein; 6-aminohexanoate-dimer hydrolase YP_001991082.1 PFAM: Choloylglycine hydrolase; KEGG: oan:Oant_1699 choloylglycine hydrolase YP_001991083.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bbt:BBta_3058 permease of the major facilitator superfamily YP_001991084.1 KEGG: nha:Nham_0909 hypothetical protein YP_001991085.1 PFAM: Flp/Fap pilin component; KEGG: bja:bsl1442 pilus assembly protein pilin subunit YP_001991086.1 KEGG: ppg:PputGB1_1968 major facilitator superfamily MFS_1 YP_001991087.1 KEGG: bbt:BBta_3066 hypothetical protein YP_001991088.1 KEGG: bbt:BBta_6268 methyl-accepting chemotaxis receptor/sensory transducer with PAS domain; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001991089.1 TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: nha:Nham_1410 phage portal protein, HK97 YP_001991090.1 KEGG: nwi:Nwi_1162 hypothetical protein YP_001991091.1 KEGG: nha:Nham_1412 hypothetical protein YP_001991092.1 TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: nha:Nham_1413 peptidase U35, phage prohead HK97 YP_001991093.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: nha:Nham_1415 phage major capsid protein, HK97 YP_001991094.1 KEGG: nwi:Nwi_1168 hypothetical protein YP_001991095.1 KEGG: mes:Meso_2040 hypothetical protein YP_001991096.1 PFAM: Appr-1-p processing domain protein; KEGG: tbd:Tbd_1489 Appr-1-p processing protein YP_001991097.1 KEGG: tbd:Tbd_1490 hypothetical protein YP_001991098.1 KEGG: nha:Nham_1407 hypothetical protein YP_001991099.1 PFAM: protein of unknown function DUF264; KEGG: azc:AZC_1105 hypothetical protein YP_001991100.1 KEGG: bra:BRADO3033 conserved hypothetical protein; signal peptide YP_001991101.1 KEGG: nha:Nham_2225 hypothetical protein YP_001991102.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: bbt:BBta_0650 serine protease YP_001991103.1 KEGG: nha:Nham_1417 phage conserved hypothetical protein, phiE125 gp8 YP_001991104.1 TIGRFAM: phage head-tail adaptor; KEGG: xau:Xaut_3159 phage head-tail adaptor YP_001991105.1 KEGG: nha:Nham_1418 gene transfer agent (GTA) like protein YP_001991106.1 TIGRFAM: phage major tail protein, TP901-1 family; KEGG: nha:Nham_1419 phage major tail protein, TP901-1 YP_001991107.1 KEGG: nha:Nham_1420 gene transfer agent (GTA) like protein YP_001991108.1 PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1176 phage conserved hypothetical protein YP_001991109.1 KEGG: nha:Nham_1422 gene transfer agent (GTA) like protein YP_001991110.1 PFAM: conserved hypothetical protein; KEGG: nha:Nham_1423 hypothetical protein YP_001991112.1 PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1179 hypothetical protein YP_001991113.1 TIGRFAM: phage cell wall peptidase, NlpC/P60 family; KEGG: nwi:Nwi_1180 phage cell wall peptidase, NlpC/P60 YP_001991114.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: mrd:Mrad2831_2003 glutathione-dependent formaldehyde-activating GFA YP_001991116.1 PFAM: regulatory protein MarR; KEGG: mex:Mext_1446 regulatory protein MarR YP_001991117.1 KEGG: mlo:mlr5153 hypothetical protein YP_001991118.1 PFAM: cytochrome B561; KEGG: rle:RL3155 cytochrome b561 YP_001991119.1 KEGG: nha:Nham_1426 gene transfer agent (GTA) orfg15, like protein YP_001991120.1 KEGG: mrd:Mrad2831_4981 hypothetical protein YP_001991121.1 KEGG: nha:Nham_1429 glycohydrolase YP_001991122.1 KEGG: azc:AZC_2138 hypothetical protein YP_001991123.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_1433 two component transcriptional regulator, winged helix family YP_001991124.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: nha:Nham_1434 periplasmic sensor signal transduction histidine kinase YP_001991125.1 KEGG: nha:Nham_1435 LipA a lipoprotein YP_001991126.1 KEGG: nha:Nham_1436 hypothetical protein YP_001991127.1 TIGRFAM: cytochrome C-type biogenesis protein CcmI; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: bbt:BBta_3071 cytochrome C-type biogenesis protein CycH YP_001991128.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome C maturation system; periplasmic protein anchored to the inner membrane YP_001991129.1 TIGRFAM: cytochrome C-type biogenesis protein CcmF; PFAM: cytochrome C assembly protein; KEGG: nha:Nham_1439 cytochrome C-type biogenesis protein CcmF YP_001991130.1 PFAM: cytochrome C biogenesis protein; KEGG: bja:blr3128 cytochrome C-type biogenesis protein YP_001991131.1 formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate YP_001991132.1 PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A1114 major facilitator superfamily MFS_1 YP_001991133.1 SMART: helix-turn-helix domain protein; KEGG: rru:Rru_A1115 transcriptional regulator, XRE family YP_001991134.1 KEGG: pna:Pnap_2337 hypothetical protein YP_001991135.1 PFAM: ferredoxin; KEGG: rsh:Rsph17029_0397 ferredoxin YP_001991136.1 KEGG: bra:BRADO2741 serine protease do-like precursor; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001991137.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bbt:BBta_3078 two-component transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis YP_001991138.1 PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; KEGG: bbt:BBta_0969 methyl-accepting chemotaxis protein YP_001991139.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bbt:BBta_3085 two-component sensor histidine kinase YP_001991140.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_001991141.1 KEGG: bja:bll6166 hypothetical protein YP_001991142.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mex:Mext_2407 helix-turn-helix-domain containing protein AraC type YP_001991143.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Autotransporter beta- domain protein; KEGG: azc:AZC_3227 outer membrane autotransporter barrel precursor YP_001991144.1 KEGG: bbt:BBta_3094 two-component sensor histidine kinase with a ATP-binding domain (C-term); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein YP_001991145.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: nha:Nham_1450 cation diffusion facilitator family transporter YP_001991146.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bra:BRADO4966 NADPH quinone oxidoreductase YP_001991147.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: bja:bll3143 hypothetical protein YP_001991148.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:bll3146 hypothetical protein YP_001991149.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_001991150.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_3099 oxalate/formate antiporter YP_001991151.1 catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA YP_001991152.1 PFAM: regulatory protein GntR HTH; GntR domain protein; hypothetical protein; KEGG: bja:bll3158 transcriptional regulatory protein YP_001991154.1 possibly involved in transport of pyrroloquinoline quinone transport YP_001991155.1 Required in the synthesis of PPQ, but its exact function is unknown YP_001991156.1 PFAM: coenzyme PQQ synthesis D; KEGG: bra:BRADO5796 coenzyme PQQ synthesis protein D (pyrroloquinoline quinone biosynthesis protein D)(PqqD) YP_001991157.1 KEGG: bbt:BBta_6304 pyrroloquinoline quinone biosynthesis protein PqqE; TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001991158.1 PFAM: secretion protein HlyD family protein; KEGG: bja:blr3854 hypothetical protein YP_001991159.1 PFAM: protein of unknown function DUF1656; KEGG: rme:Rmet_4792 protein of unknown function DUF1656 YP_001991160.1 PFAM: fusaric acid resistance protein conserved region; KEGG: bra:BRADO4669 efflux transporter permease; fusaric acid resistance pump YP_001991161.1 PFAM: regulatory protein TetR; KEGG: eci:UTI89_C4911 UidR transriptional regulator YP_001991162.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_5970 alcohol dehydrogenase class III YP_001991163.1 SMART: ATPase AAA; KEGG: bbt:BBta_6263 hypothetical protein YP_001991164.1 PFAM: monooxygenase; KEGG: bmf:BAB1_2052 bacterial luciferase YP_001991165.1 PFAM: regulatory protein TetR; KEGG: xau:Xaut_4925 transcriptional regulator, TetR family YP_001991166.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO1729 component of multidrug efflux system (RND family) YP_001991167.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_2040 component of multidrug efflux system (RND family) YP_001991168.1 PFAM: acriflavin resistance protein; KEGG: bbt:BBta_2039 component of multidrug efflux system (RND family) YP_001991170.1 PFAM: Patatin; KEGG: bja:blr4684 hypothetical protein YP_001991171.1 KEGG: bra:BRADO1664 hypothetical protein YP_001991172.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; KEGG: ret:RHE_CH02959 probable adenylate cyclase protein YP_001991173.1 PFAM: regulatory protein TetR; KEGG: psp:PSPPH_3268 transcriptional regulator, TetR family YP_001991174.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO1901 component of multidrug efflux system; signal peptide YP_001991175.1 PFAM: acriflavin resistance protein; KEGG: nha:Nham_1082 acriflavin resistance protein YP_001991176.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: bra:BRADO4745 tRNA-dihydrouridine synthase A YP_001991177.1 KEGG: swi:Swit_0156 transcriptional regulator-like protein YP_001991178.1 PFAM: protein of unknown function DUF1044; KEGG: swi:Swit_0155 protein of unknown function DUF1044 YP_001991179.1 KEGG: bbt:BBta_3458 exported protein of unknown function YP_001991180.1 PFAM: protein of unknown function DUF1289; KEGG: bja:bsl3737 hypothetical protein YP_001991181.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nha:Nham_1469 periplasmic sensor signal transduction histidine kinase YP_001991182.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bra:BRADO4737 oxidoreductase; 3-hydroxyisobutyrate dehydrogenase YP_001991183.1 KEGG: bja:blr3742 probable multidrug-resistance related protein YP_001991184.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bbt:BBta_3466 periplasmic mannitol-binding protein YP_001991185.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: xau:Xaut_4764 TRAP dicarboxylate transporter DctM subunit YP_001991186.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: azc:AZC_2523 glutamate transport protein YP_001991187.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_001991188.1 KEGG: nha:Nham_1478 hypothetical protein YP_001991189.1 TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bbt:BBta_3482 phosphoglycolate phosphatase YP_001991190.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_001991191.1 KEGG: nwi:Nwi_1222 hypothetical protein YP_001991192.1 TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: nha:Nham_1482 glutathione reductase YP_001991193.1 KEGG: bja:blr3778 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II YP_001991194.1 PFAM: diacylglycerol kinase; KEGG: nha:Nham_1484 diacylglycerol kinase YP_001991195.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_001991197.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bja:blr7666 transcriptional regulatory protein YP_001991198.1 PFAM: sulfatase; KEGG: reh:H16_B0315 arylsulfatase YP_001991199.1 KEGG: bja:blr2668 hypothetical protein YP_001991200.1 PFAM: PilT protein domain protein; KEGG: cch:Cag_1433 possible NtrR protein YP_001991201.1 PFAM: cupin; KEGG: azc:AZC_1498 hypothetical protein YP_001991202.1 KEGG: bja:bll3788 hypothetical protein YP_001991203.1 KEGG: bja:bll3789 hypothetical protein YP_001991204.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001991205.1 KEGG: bbt:BBta_3499 hypothetical protein YP_001991206.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_3500 acetyltransferase YP_001991207.1 KEGG: nwi:Nwi_1231 alpha-isopropylmalate/homocitrate synthase family transferase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain YP_001991208.1 thiamine-pyrophosphate requiring enzyme YP_001991209.1 PFAM: FAD linked oxidase domain protein; KEGG: pla:Plav_2705 FAD linked oxidase domain protein YP_001991210.1 PFAM: cytochrome C class I; KEGG: xau:Xaut_1071 gluconate 2-dehydrogenase (acceptor) YP_001991211.1 PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1232 conserved hypothetical protein 730 YP_001991212.1 PFAM: ABC transporter transmembrane region; ABC transporter; SMART: ATPase AAA; KEGG: bja:blr3795 ABC transporter HlyB/MsbA family YP_001991213.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_001991214.1 KEGG: bja:blr3797 phosphatidylserine synthase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; outer membrane TOM13 domain protein YP_001991215.1 KEGG: bbt:BBta_3507 hypothetical protein YP_001991216.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: bra:BRADO4687 chemotaxis protein MotA (flagellar motor component) YP_001991217.1 PFAM: OmpA/MotB domain protein; KEGG: bja:blr3801 probable chemotaxis protein YP_001991218.1 PFAM: K potassium transporter; KEGG: bbt:BBta_3512 low affinity potassium transporter (Kup family) YP_001991219.1 SMART: rhodanese domain protein; KEGG: bja:blr3804 hypothetical protein YP_001991220.1 PFAM: aminotransferase class I and II; KEGG: bbt:BBta_3515 hypothetical protein YP_001991221.1 PFAM: extracellular solute-binding protein family 1; KEGG: nha:Nham_1501 extracellular solute-binding protein, family 1 YP_001991222.1 PFAM: protein of unknown function DUF1551 YP_001991223.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tac:Ta0491 P-methyltransferase related protein YP_001991224.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_001991225.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xau:Xaut_1258 alcohol dehydrogenase zinc-binding domain protein YP_001991226.1 FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP. YP_001991227.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_001991228.1 PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: nwi:Nwi_1245 3-hydroxymyristoyl-acyl carrier protein dehydratase YP_001991229.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides YP_001991230.1 KEGG: bbt:BBta_3523 hypothetical protein YP_001991231.1 PFAM: ParB-like nuclease; KEGG: bbt:BBta_3524 hypothetical protein YP_001991232.1 PFAM: MgtC/SapB transporter; KEGG: bja:bll3816 sulfur-regulated protein YP_001991233.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_0972 TonB-dependent siderophore receptor YP_001991234.1 PFAM: protein of unknown function DUF87; KEGG: nha:Nham_1508 protein of unknown function DUF87 YP_001991235.1 KEGG: swi:Swit_2155 hypothetical protein YP_001991236.1 KEGG: nwi:Nwi_2345 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase YP_001991237.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_001991238.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bra:BRADO5564 acetolactate synthase 3 catalytic subunit YP_001991239.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_001991240.1 KEGG: xcv:XCV0079 hypothetical protein YP_001991241.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:bll6499 amino acid metabolite efflux pump YP_001991242.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_001991243.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_5550 GntR-like protein YP_001991244.1 PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO0975 ABC-type branched-chain amino acid transporter periplasmic binding protein YP_001991245.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO5556 oxidoreductase, short-chain dehydrogenase/reductase family YP_001991247.1 PFAM: ABC transporter inner membrane protein; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bra:BRADO5551 glycine betaine/carnitine/choline ABC transporter (permease and substrate binding protein) YP_001991248.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2718 ABC transporter YP_001991249.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll6488 ABC transporter ATP-binding protein YP_001991250.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_6067 ABC transporter (permease protein) YP_001991251.1 PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; KEGG: bbt:BBta_6066 ABC transporter (substrate-binding protein) YP_001991252.1 KEGG: bbt:BBta_6065 hypothetical protein YP_001991253.1 KEGG: mlo:mll5831 biotin synthetase; TIGRFAM: biotin synthase; PFAM: radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_001991255.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_001991256.1 TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bra:BRADO5527 TRAP-type C4-dicarboxylate transport system, binding periplasmic protein (DctP subunit) YP_001991257.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bra:BRADO5526 TRAP-type C4-dicarboxylate transport system, small permease component (DctQ subunit) YP_001991258.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bra:BRADO5525 TRAP-type C4-dicarboxylate transport system, large permease component (DctM subunit) YP_001991259.1 KEGG: bbt:BBta_6040 exported protein of unknown function YP_001991260.1 KEGG: bra:BRADO3248 hypothetical protein YP_001991267.1 KEGG: nha:Nham_1977 hypothetical protein YP_001991268.1 PFAM: ATPase AAA; SMART: ATPase AAA; KEGG: nha:Nham_1979 ATPase AAA, central region YP_001991272.1 KEGG: nha:Nham_2002 DEAD/DEAH box helicase-like YP_001991273.1 PFAM: NERD domain protein; SMART: ATPase AAA; KEGG: pol:Bpro_5029 superfamily I DNA and RNA helicases and helicase subunits-like YP_001991274.1 KEGG: spq:SPAB_03320 hypothetical protein YP_001991275.1 PFAM: ATP-binding region ATPase domain protein; KEGG: mrd:Mrad2831_3274 PAS/PAC sensor signal transduction histidine kinase YP_001991276.1 PFAM: helix-turn-helix domain protein; KEGG: oan:Oant_1301 transcriptional regulator, XRE family YP_001991279.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bbt:BBta_7268 cation efflux system protein CzcD YP_001991280.1 PFAM: MgtC/SapB transporter; KEGG: shw:Sputw3181_3581 MgtC/SapB transporter YP_001991281.1 KEGG: sit:TM1040_0424 hypothetical protein YP_001991283.1 PFAM: regulatory protein MarR; KEGG: bja:blr4984 transcriptional regulatory protein YP_001991284.1 PFAM: SNARE associated Golgi protein; KEGG: mex:Mext_0105 SNARE associated Golgi protein YP_001991285.1 KEGG: atc:AGR_pAT_689 hypothetical protein YP_001991286.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_7296 cadmium-exporting ATPase YP_001991287.1 PFAM: flagellar basal body rod protein; KEGG: bbt:BBta_p0123 flagellar basal-body rod protein FlgF YP_001991289.1 PFAM: regulatory protein MarR; KEGG: bja:blr4984 transcriptional regulatory protein YP_001991290.1 KEGG: nha:Nham_1847 hypothetical protein YP_001991291.1 PFAM: outer membrane efflux protein; KEGG: nha:Nham_1848 outer membrane efflux protein YP_001991292.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: xau:Xaut_3982 efflux transporter RND family, MFP subunit YP_001991293.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: nha:Nham_4533 heavy metal efflux pump CzcA YP_001991294.1 KEGG: xau:Xaut_3985 hypothetical protein YP_001991295.1 KEGG: bbt:BBta_7260 OpgC protein YP_001991301.1 KEGG: sun:SUN_2228 hypothetical protein YP_001991305.1 PFAM: metallophosphoesterase; KEGG: ajs:Ajs_0506 metallophosphoesterase YP_001991306.1 PFAM: VRR-NUC domain protein; KEGG: ppf:Pput_4127 VRR-NUC domain protein YP_001991309.1 TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: nha:Nham_3852 ATP dependent DNA ligase YP_001991312.1 KEGG: sco:SCO3290 hypothetical protein YP_001991313.1 KEGG: bja:bll7218 hypothetical protein YP_001991317.1 KEGG: mrd:Mrad2831_2505 hypothetical protein YP_001991322.1 KEGG: ade:Adeh_1681 PE-PGRS family protein YP_001991323.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: nwi:Nwi_0627 transcriptional regulatory protein, LuxR family YP_001991324.1 PFAM: autoinducer synthesis protein; KEGG: nwi:Nwi_0626 autoinducer synthesis protein YP_001991326.1 KEGG: cvi:CV_2405 hypothetical protein YP_001991327.1 KEGG: bra:BRADO4720 hypothetical protein YP_001991329.1 KEGG: mrd:Mrad2831_2505 hypothetical protein YP_001991331.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: azc:AZC_3019 arginine/lysine/ornithine decarboxylases YP_001991332.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xau:Xaut_0639 GCN5-related N-acetyltransferase YP_001991333.1 KEGG: bja:blr4934 hypothetical protein YP_001991334.1 PFAM: outer membrane efflux protein; KEGG: bja:blr4935 divalent cation resistant determinant protein C YP_001991335.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: xau:Xaut_3982 efflux transporter RND family, MFP subunit YP_001991336.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: nha:Nham_4533 heavy metal efflux pump CzcA YP_001991337.1 KEGG: xau:Xaut_3985 hypothetical protein YP_001991338.1 KEGG: rme:Rmet_4922 hypothetical protein YP_001991339.1 KEGG: bbt:BBta_6006 hypothetical protein YP_001991340.1 PFAM: FMN-binding domain protein; KEGG: bja:blr0314 nitrous oxide reductase expression regulator YP_001991341.1 reduces nitrous oxide to nitrogen YP_001991342.1 PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; carbohydrate-binding and sugar hydrolysis; KEGG: bja:blr0316 periplasmic copper-binding precursor YP_001991343.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr0317 copper ABC transporter YP_001991344.1 KEGG: bja:blr0318 nitrous oxide metabolic protein YP_001991345.1 PFAM: NosL family protein; KEGG: bja:blr0319 NosL protein YP_001991346.1 PFAM: ApbE family lipoprotein; KEGG: bja:blr0320 NosX protein YP_001991347.1 KEGG: pla:Plav_1007 hypothetical protein YP_001991348.1 KEGG: mag:amb3576 hypothetical protein YP_001991349.1 KEGG: mag:amb3575 hypothetical protein YP_001991350.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: mag:amb3574 hypothetical protein YP_001991351.1 PFAM: protein of unknown function DUF378; KEGG: bra:BRADO1751 hypothetical protein YP_001991352.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO5453 oxidoreductase, NAD(P)-binding domain YP_001991353.1 SMART: response regulator receiver; KEGG: mrd:Mrad2831_4234 response regulator receiver protein YP_001991354.1 KEGG: mrd:Mrad2831_6264 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001991356.1 PFAM: HWE histidine kinase; KEGG: mex:Mext_2764 HWE histidine kinase YP_001991357.1 PFAM: regulatory protein Crp; KEGG: mex:Mext_2763 cyclic nucleotide-binding YP_001991359.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ret:RHE_PB00045 alcohol dehydrogenase protein YP_001991360.1 PFAM: periplasmic binding protein; KEGG: nha:Nham_3728 periplasmic binding protein YP_001991361.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1 YP_001991362.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_001991363.1 KEGG: atc:AGR_C_5074 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_001991364.1 KEGG: mex:Mext_1035 CobE protein YP_001991365.1 KEGG: azc:AZC_3942 precorrin-6Y C5,15-methyltransferase; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_001991366.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_001991367.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nar:Saro_0338 precorrin-3B C17-methyltransferase YP_001991368.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sil:SPO2866 precorrin-2 C20-methyltransferase YP_001991369.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate YP_001991370.1 KEGG: jan:Jann_2931 cobaltochelatase YP_001991371.1 TIGRFAM: CitB domain protein; KEGG: rru:Rru_A2987 hypothetical protein YP_001991372.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica YP_001991373.1 KEGG: cak:Caul_2742 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_001991374.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cak:Caul_2743 cobalamin 5'-phosphate synthase YP_001991375.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_001991376.1 catalyzes the formation of precorrin 6x from precorrin 5 YP_001991377.1 PFAM: glutamine amidotransferase class-I; KEGG: xau:Xaut_4097 glutamine amidotransferase class-I YP_001991378.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: bja:bll4251 MFS permease YP_001991379.1 PFAM: isochorismatase hydrolase; KEGG: bra:BRADO5128 isochorismatase family protein YP_001991380.1 PFAM: protein of unknown function DUF1427; KEGG: bja:bsl6958 hypothetical protein YP_001991381.1 PFAM: Amidohydrolase 3; KEGG: bja:blr4259 hypothetical protein YP_001991382.1 PFAM: DoxX family protein; KEGG: bja:bll6956 hypothetical protein YP_001991383.1 KEGG: bja:blr4261 hypothetical protein YP_001991384.1 KEGG: bja:blr4262 hypothetical protein YP_001991385.1 PFAM: alpha/beta hydrolase fold; KEGG: atc:AGR_L_210 non-heme chloroperoxidase (chloride peroxidase) (CPO-P) (chloroperoxidase P) YP_001991386.1 KEGG: azc:AZC_2121 hypothetical protein YP_001991387.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: serine/threonine protein kinase; KEGG: bvi:Bcep1808_5666 histidine kinase, dimerisation/phosphoacceptor YP_001991388.1 PFAM: response regulator receiver; KEGG: azc:AZC_1362 two-component response regulator YP_001991389.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: azc:AZC_1361 high similarity to two-component response regulator YP_001991390.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pla:Plav_0517 helix-turn-helix-domain containing protein AraC type YP_001991391.1 KEGG: bja:blr5735 transcriptional regulatory protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; ATPase AAA YP_001991392.1 KEGG: bja:bll5734 ABC transporter nitrate-binding protein YP_001991393.1 TIGRFAM: nitrate ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: bja:bll5733 nitrate ABC transporter permease protein YP_001991394.1 KEGG: bja:bll5732 ABC transporter ATP-binding protein; TIGRFAM: nitrate ABC transporter ATPase subunits C and D; PFAM: ABC transporter; SMART: ATPase AAA YP_001991395.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide YP_001991396.1 KEGG: xau:Xaut_0833 hypothetical protein YP_001991397.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_001991398.1 with HmuTU is involved in the transport of hemin YP_001991399.1 PFAM: transport system permease protein; KEGG: nwi:Nwi_2323 ABC-type Fe3+-siderophore transport system permease component YP_001991400.1 PFAM: periplasmic binding protein; KEGG: bja:blr7077 hemin ABC transporter hemin-binding protein YP_001991401.1 KEGG: azc:AZC_1578 hypothetical protein YP_001991402.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001991403.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: hha:Hhal_0382 NAD dependent epimerase/dehydratase family YP_001991404.1 TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bja:bll7076 hemin receptor precursor YP_001991405.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bja:bll7075 hypothetical protein YP_001991406.1 PFAM: protein of unknown function DUF1008; KEGG: bja:bll7074 hypothetical protein YP_001991407.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: bja:bll7073 biopolymer transport protein YP_001991408.1 TIGRFAM: TonB system transport protein ExbD; PFAM: biopolymer transport protein ExbD/TolR; KEGG: bja:bll7072 biopolymer transport protein YP_001991409.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: bja:bll7071 TonB protein YP_001991410.1 KEGG: bbt:BBta_2219 hypothetical protein YP_001991411.1 PFAM: protein of unknown function DUF81; KEGG: bvi:Bcep1808_3205 protein of unknown function DUF81 YP_001991412.1 KEGG: bra:BRADO1425 conserved hypothetical protein; signal peptide YP_001991413.1 KEGG: bbt:BBta_1105 membrane protein of unknown function YP_001991414.1 KEGG: bbt:BBta_1104 hypothetical protein YP_001991415.1 KEGG: nha:Nham_2144 hypothetical protein YP_001991416.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bja:blr0516 two-component hybrid sensor and regulator YP_001991417.1 PFAM: cytochrome C class I; KEGG: bja:blr6128 cytochrome C552 YP_001991418.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:blr0981 acyl-CoA dehydrogenase YP_001991419.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bra:BRADO6880 acyl-CoA dehydrogenase YP_001991420.1 PFAM: glutathione S-transferase domain; KEGG: bja:blr0983 glutathione S-transferase family protein YP_001991421.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bra:BRADO6878 transcriptional regulator, AraC/XylS family YP_001991422.1 PFAM: protein of unknown function DUF849; KEGG: bbt:BBta_0673 hypothetical protein YP_001991423.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bbt:BBta_0674 fatty-acid--CoA ligase YP_001991424.1 PFAM: carboxyl transferase; KEGG: bbt:BBta_0675 carboxylase YP_001991425.1 PFAM: biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: bja:blr0987 3-methylcrotonyl-CoA carboxylase alpha subunit YP_001991426.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001991427.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_B0910 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II YP_001991428.1 KEGG: bja:blr7140 hypothetical protein YP_001991429.1 PFAM: beta-lactamase; KEGG: nha:Nham_2704 beta-lactamase YP_001991430.1 PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: bbt:BBta_2816 catechol 1,2-dioxygenase YP_001991431.1 PFAM: aldo/keto reductase; KEGG: bbt:BBta_2824 aldo/keto reductase YP_001991432.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bra:BRADO2478 conserved hypothetical protein; transmembrane protein YP_001991433.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bja:blr2589 hypothetical protein YP_001991434.1 PFAM: Aldehyde Dehydrogenase_; KEGG: bbt:BBta_2831 aldehyde dehydrogenase YP_001991435.1 PFAM: acyltransferase 3; KEGG: azc:AZC_3119 acyltransferase YP_001991437.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_001991438.1 KEGG: gdi:GDI3488 hypothetical protein YP_001991439.1 KEGG: nha:Nham_0017 hypothetical protein YP_001991440.1 KEGG: bbt:BBta_1417 exported protein of unknown function YP_001991442.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_4242 short-chain dehydrogenases/reductases (SDR) family protein YP_001991443.1 PFAM: regulatory protein ArsR; KEGG: bbt:BBta_4243 transcriptional regulator, ArsR family YP_001991444.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: mlo:mll1534 hypothetical protein YP_001991445.1 TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: bbt:BBta_4386 transporter (YecA family protein with sec-C motif)) YP_001991446.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is co-regulated with symbiotic nitrogen fixation genes YP_001991447.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001991448.1 PFAM: Usg family protein; KEGG: nha:Nham_2592 hypothetical protein YP_001991449.1 KEGG: xfm:Xfasm12_1694 hypothetical protein YP_001991450.1 PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: bja:blr5621 hypothetical protein YP_001991451.1 PFAM: ribulose bisphosphate carboxylase large chain; KEGG: rru:Rru_A1998 ribulose-bisphosphate carboxylase-like protein; rubisco-like protein YP_001991452.1 PFAM: cupin; KEGG: rru:Rru_A2000 hypothetical protein YP_001991453.1 KEGG: mma:MM_0269 hypothetical protein YP_001991454.1 KEGG: ppf:Pput_2833 hypothetical protein YP_001991455.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_5277 oxidoreductase YP_001991456.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_2393 hypothetical protein YP_001991457.1 PFAM: 20S proteasome A and B subunits; KEGG: bja:blr5617 hypothetical protein YP_001991458.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bja:blr5614 hypothetical protein YP_001991459.1 PFAM: protein of unknown function DUF403; KEGG: bra:BRADO2904 hypothetical protein YP_001991460.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: bbt:BBta_5273 hypothetical protein YP_001991461.1 PFAM: molybdopterin binding domain; KEGG: bra:BRADO2908 conserved hypothetical protein; competence damage protein; molybdopterin binding domain YP_001991462.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively YP_001991463.1 KEGG: nha:Nham_2589 hypothetical protein YP_001991464.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate YP_001991465.1 PFAM: glutathione S-transferase domain; KEGG: bja:bll5607 glutathione S-transferase YP_001991466.1 PFAM: DSBA oxidoreductase; KEGG: bja:bll5606 2-hydroxychromene-2-carboxylate isomerase YP_001991467.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_5263 oxidoreductase YP_001991468.1 PFAM: MaoC domain protein dehydratase; KEGG: nha:Nham_2554 MaoC-like dehydratase YP_001991469.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_3584 3-oxo-(acyl) acyl carrier protein reductase YP_001991470.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nha:Nham_2553 HI0933-like protein YP_001991471.1 KEGG: bja:bsr4462 hypothetical protein YP_001991472.1 PFAM: regulatory protein TetR; KEGG: bcm:Bcenmc03_5533 transcriptional regulator, TetR family YP_001991473.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2552 ABC transporter YP_001991474.1 PFAM: protein of unknown function DUF188; KEGG: bja:bll3966 hypothetical protein YP_001991475.1 KEGG: bbt:BBta_3593 hypothetical protein YP_001991476.1 PFAM: extracellular ligand-binding receptor; KEGG: bbt:BBta_5091 branched-chain amino acid ABC transporter substrate-binding protein YP_001991477.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bja:bll3968 carbon monoxide dehydrogenase large chain YP_001991478.1 PFAM: Ppx/GppA phosphatase; KEGG: bja:blr3969 probable exopolyphosphatase YP_001991479.1 KEGG: pde:Pden_1824 hypothetical protein YP_001991480.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: bra:BRADO3151 ribosomal RNA large subunit (23S) methyltransferase YP_001991482.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_3608 multidrug efflux protein YP_001991483.1 KEGG: bbt:BBta_3609 exported protein of unknown function YP_001991484.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_001991485.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: bbt:BBta_3611 NADP-dependent oxidoreductase YP_001991486.1 PFAM: Fmu (Sun) domain protein; KEGG: bra:BRADO3168 SUN-family protein, RNA methyltransferase YP_001991487.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001991490.1 KEGG: pau:PA14_46460 hypothetical protein YP_001991491.1 KEGG: csa:Csal_0225 hypothetical protein YP_001991492.1 PFAM: sodium/glutamate symporter; KEGG: oan:Oant_4810 sodium/glutamate symporter YP_001991493.1 PFAM: PilT protein domain protein; KEGG: xau:Xaut_4574 PilT protein domain protein YP_001991494.1 KEGG: mlo:msr5902 hypothetical protein YP_001991495.1 PFAM: protein of unknown function UPF0074; hypothetical protein; KEGG: bja:blr7860 hypothetical protein YP_001991496.1 PFAM: glutathione S-transferase domain; KEGG: bja:bll7859 glutathione S-transferase YP_001991497.1 KEGG: azo:azo1164 hypothetical protein YP_001991498.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: bbt:BBta_7416 hypothetical protein YP_001991499.1 KEGG: sme:SMb20103 monooxygenase protein YP_001991501.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001991502.1 PFAM: arsenate reductase and related; KEGG: cak:Caul_2487 arsenate reductase and related YP_001991504.1 KEGG: cch:Cag_0427 hypothetical protein YP_001991505.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr4037 ABC transporter ATP-binding protein YP_001991506.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_3756 branched-chain amino acid transport system ATP-binding protein YP_001991507.1 PFAM: inner-membrane translocator; KEGG: bra:BRADO3733 ABC transporter permease protein; branched-chain amino acid transport permease YP_001991508.1 PFAM: inner-membrane translocator; KEGG: bbt:BBta_3759 membrane protein of unknown function with ABC transporter domain YP_001991509.1 KEGG: ang:An01g09380 hypothetical protein Pfam: Extensin_2 Troponin PROSITE: HEXAPEP_TRANSFERASES ALA_RICH ARG_RICH GLN_RICH GLU_RICH PRO_RICH YP_001991510.1 PFAM: protein of unknown function DUF47; KEGG: bbt:BBta_3760 low-affinity phosphate transport accessory protein YP_001991511.1 PFAM: phosphate transporter; KEGG: nwi:Nwi_2031 phosphate transporter YP_001991512.1 TIGRFAM: addiction module antidote protein, HigA family; KEGG: btr:Btr_0496 virulence-associated protein YP_001991513.1 PFAM: plasmid maintenance system killer; KEGG: bhe:BH06630 hypothetical genomic island protein YP_001991514.1 PFAM: small multidrug resistance protein; KEGG: nha:Nham_1679 small multidrug resistance protein YP_001991515.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: nwi:Nwi_2027 peptide chain release factor 3 YP_001991516.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mac:MA0188 hypothetical protein YP_001991518.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1065 TPR repeat protein YP_001991519.1 KEGG: fal:FRAAL3046 hypothetical protein YP_001991520.1 KEGG: nha:Nham_2170 tetratricopeptide TPR_2 YP_001991521.1 KEGG: nwi:Nwi_1759 hypothetical protein YP_001991522.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: nha:Nham_2169 adenylate/guanylate cyclase YP_001991523.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: ccr:CC_0759 sensory box histidine kinase FixL YP_001991524.1 KEGG: xau:Xaut_4923 hypothetical protein YP_001991525.1 PFAM: regulatory protein TetR; KEGG: bja:blr4685 transcriptional regulatory protein YP_001991526.1 KEGG: bja:blr4686 hypothetical protein YP_001991527.1 KEGG: mlo:mlr2406 hypothetical protein YP_001991528.1 structural flagella protein; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_001991529.1 KEGG: bra:BRADO7004 flagellar biosynthesis repressor FlbT YP_001991530.1 PFAM: regulatory protein LuxR; KEGG: bra:BRADO1260 transcriptional regulatory protein, LuxR family YP_001991531.1 PFAM: regulatory protein LuxR; KEGG: azo:azo1777 hypothetical LuxR-family transcriptional regulator YP_001991532.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: xau:Xaut_4663 helix-turn-helix-domain containing protein AraC type YP_001991533.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bcm:Bcenmc03_6706 AMP-dependent synthetase and ligase YP_001991534.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xau:Xaut_4664 short-chain dehydrogenase/reductase SDR YP_001991535.1 KEGG: xau:Xaut_4665 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001991536.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rle:pRL100302 acyl-CoA dehydrogenase YP_001991537.1 PFAM: cytochrome B561; KEGG: cvi:CV_3278 probable cytochrome b561 YP_001991538.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cff:CFF8240_1206 TonB-dependent receptor YP_001991539.1 PFAM: periplasmic binding protein; KEGG: rle:RL2022 solute-binding component of cationic transporter YP_001991540.1 PFAM: transport system permease protein; KEGG: pde:Pden_1169 transport system permease protein YP_001991541.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pde:Pden_1170 ABC transporter YP_001991542.1 KEGG: rle:RL2017 hypothetical protein YP_001991543.1 KEGG: rha:RHA1_ro03621 hypothetical protein YP_001991544.1 KEGG: rle:RL2016 hypothetical protein YP_001991545.1 PFAM: cytochrome C prime; KEGG: azc:AZC_1821 cytochrome C precursor YP_001991546.1 PFAM: cytochrome B561; KEGG: maq:Maqu_0326 cytochrome b561 YP_001991547.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001991548.1 PFAM: coenzyme A transferase; KEGG: rxy:Rxyl_1583 glutaconate CoA-transferase YP_001991549.1 PFAM: coenzyme A transferase; KEGG: afu:AF1199 glutaconate CoA-transferase, subunit A YP_001991550.1 PFAM: conserved hypothetical protein; KEGG: pna:Pnap_2117 uncharacterized protein UPF0065 YP_001991551.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: rme:Rmet_3964 protein of unknown function DUF112, transmembrane YP_001991552.1 PFAM: protein of unknown function DUF1468; KEGG: rso:RSc0794 probable transmembrane protein YP_001991554.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_4287 transcriptional regulatory protein, LysR family YP_001991555.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: bra:BRADO3420 4-aminobutyrate aminotransferase ((S)-3-amino-2-methylpropionate transaminase) YP_001991556.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bra:BRADO0028 succinate-semialdehyde dehydrogenase [NADP+] (SSDH) YP_001991557.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_001991558.1 thiamine-pyrophosphate requiring enzyme YP_001991559.1 PFAM: extracellular solute-binding protein family 5; KEGG: pol:Bpro_0426 extracellular solute-binding protein, family 5 YP_001991560.1 PFAM: ABC transporter inner membrane protein; KEGG: pol:Bpro_0425 ABC transporter inner membrane protein YP_001991561.1 PFAM: ABC transporter inner membrane protein; KEGG: mrd:Mrad2831_3219 ABC transporter inner membrane protein YP_001991562.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_0751 ABC transporter YP_001991563.1 KEGG: bbt:BBta_7627 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_001991564.1 PFAM: Rare lipoprotein A; nuclease (SNase domain protein); KEGG: bja:blr0372 succinoglycan biosynthesis protein YP_001991565.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: eba:ebA609 cation transport ATPase YP_001991566.1 KEGG: shw:Sputw3181_0749 hypothetical protein YP_001991567.1 KEGG: shw:Sputw3181_0748 hypothetical protein YP_001991568.1 KEGG: tcr:507957.200 mucin-associated surface protein (MASP), Pfam: Prosystemin PROSITE: ALA_RICH YP_001991569.1 KEGG: eba:ebB16 hypothetical protein YP_001991570.1 KEGG: eba:ebA616 hypothetical protein YP_001991571.1 PFAM: ferric-uptake regulator; KEGG: bra:BRADO0064 ferric uptake regulation protein, FUR family YP_001991572.1 PFAM: FAD dependent oxidoreductase; KEGG: msm:MSMEG_0481 FAD dependent oxidoreductase YP_001991573.1 PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: mpt:Mpe_A3651 dihydroxy-acid dehydratase YP_001991574.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: msm:MSMEG_0483 shikimate transporter YP_001991575.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rru:Rru_A3003 transcriptional regulator, GntR family YP_001991576.1 KEGG: eca:ECA3961 hypothetical protein YP_001991577.1 KEGG: ang:An18g00710 hypothetical protein Pfam: MTS YP_001991578.1 KEGG: dar:Daro_1003 40-residue YVTN beta-propeller repeat YP_001991579.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0793 nitrogenase YP_001991580.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0794 nitrogenase YP_001991581.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: bbt:BBta_2509 O-acetylhomoserine sulfhydrylase YP_001991582.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: rru:Rru_A0774 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_001991583.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bbt:BBta_4847 transcriptional regulatory protein, AsnC/Lrp family YP_001991584.1 PFAM: Acireductone dioxygenase ARD; cupin; KEGG: dac:Daci_3175 acireductone dioxygenase ARD YP_001991585.1 KEGG: rru:Rru_A0795 nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein YP_001991586.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rru:Rru_A0796 radical SAM YP_001991587.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: cbe:Cbei_2005 nitrogenase cofactor biosynthesis protein NifB YP_001991588.1 PFAM: CBS domain containing protein; pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: spe:Spro_1627 pyridoxal-5'-phosphate-dependent protein beta subunit YP_001991589.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rru:Rru_A0786 cystathionine gamma-synthase YP_001991590.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: bbt:BBta_2508 2OG-Fe(II) oxygenase superfamily YP_001991591.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: oan:Oant_3792 lipoprotein, YaeC family YP_001991592.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: oan:Oant_3791 ABC transporter YP_001991593.1 PFAM: ABC transporter inner membrane protein; KEGG: oan:Oant_3790 ABC transporter inner membrane protein YP_001991594.1 KEGG: rru:Rru_A0774 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_001991595.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0794 nitrogenase YP_001991596.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0793 nitrogenase YP_001991597.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: bja:blr5707 threonine aldolase YP_001991598.1 KEGG: atc:AGR_L_1715 hypothetical protein YP_001991599.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bja:bll3558 two-component hybrid sensor and regulator YP_001991600.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:bll3559 two-component response regulator YP_001991601.1 KEGG: rle:RL3151 hypothetical protein YP_001991602.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gsu:GSU2697 multidrug resistance protein YP_001991603.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: xau:Xaut_2451 RND efflux system, outer membrane lipoprotein, NodT family YP_001991604.1 KEGG: bbt:BBta_7373 membrane protein of unknown function YP_001991605.1 KEGG: nwi:Nwi_2293 hypothetical protein YP_001991606.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nwi:Nwi_2294 TonB-dependent siderophore receptor YP_001991607.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nwi:Nwi_2295 GCN5-related N-acetyltransferase YP_001991608.1 PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: nwi:Nwi_2296 TonB-dependent receptor YP_001991609.1 PFAM: FecR protein; KEGG: nwi:Nwi_2297 FecR protein YP_001991610.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rsh:Rsph17029_3961 ABC transporter YP_001991611.1 PFAM: transport system permease protein; KEGG: atc:AGR_C_4491 ferrichrome ABC transporter (permease) homolog YP_001991612.1 PFAM: transport system permease protein; KEGG: rsp:RSP_3220 ABC ferric siderophore transporter inner membrane subunit YP_001991613.1 PFAM: periplasmic binding protein; KEGG: rsp:RSP_3079 ABC Fe+3 siderophore transporter periplasmic substrate-binding protein YP_001991614.1 PFAM: xylose isomerase; KEGG: nwi:Nwi_2298 xylose isomerase-like TIM barrel YP_001991615.1 KEGG: nwi:Nwi_2299 hypothetical protein YP_001991616.1 activates fatty acids by binding to coenzyme A YP_001991617.1 PFAM: IucA/IucC family protein; KEGG: nwi:Nwi_2301 siderophore synthetase component YP_001991618.1 PFAM: IucA/IucC family protein; KEGG: nwi:Nwi_2302 siderophore synthetase component YP_001991619.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: nwi:Nwi_2303 Fec I like protein YP_001991620.1 PFAM: ABC transporter; SbmABacA family protein; ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_1667 ABC transporter (fused ATP-binding and permease components) YP_001991621.1 PFAM: ferric iron reductase; KEGG: xau:Xaut_2784 ferric iron reductase YP_001991622.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bpe:BP1138 ferric siderophore receptor YP_001991623.1 KEGG: gtn:GTNG_1127 dipicolinate synthase, A chain YP_001991624.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001991625.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001991626.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: radical SAM domain protein; KEGG: pde:Pden_2987 anaerobic ribonucleoside-triphosphate reductase activating protein YP_001991627.1 KEGG: pde:Pden_2988 hypothetical protein YP_001991628.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001991629.1 KEGG: smd:Smed_4449 hypothetical protein YP_001991630.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: swi:Swit_4792 protein of unknown function DUF955 YP_001991631.1 PFAM: thioesterase superfamily protein; KEGG: pde:Pden_1349 thioesterase superfamily protein YP_001991632.1 PFAM: MmgE/PrpD family protein; KEGG: pde:Pden_1348 2-methylcitrate dehydratase YP_001991633.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity YP_001991634.1 TIGRFAM: methylisocitrate lyase; KEGG: vei:Veis_0650 methylisocitrate lyase YP_001991635.1 PFAM: protein of unknown function DUF208; KEGG: nwi:Nwi_2889 protein of unknown function DUF208 YP_001991636.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_001991637.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_2201 TonB-dependent receptor YP_001991638.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism YP_001991639.1 KEGG: pau:PA14_39630 hypothetical protein YP_001991640.1 KEGG: pau:PA14_39620 hypothetical protein YP_001991641.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bja:blr7666 transcriptional regulatory protein YP_001991642.1 PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: mag:amb1575 NAD(+)-dinitrogen-reductase ADP-D-ribosyltransferase YP_001991643.1 KEGG: mag:amb1576 ADP-ribosyl-[dinitrogen reductase] glycohydrolase; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; PFAM: ADP-ribosylation/Crystallin J1 YP_001991645.1 KEGG: bja:blr5534 hypothetical protein YP_001991646.1 KEGG: bra:BRADO4860 aliphatic amidase expression-regulating protein, AmiC YP_001991647.1 PFAM: ANTAR domain protein; KEGG: bra:BRADO4859 conserved hypothetical protein; ANTAR domain (AmiR antitermination protein) YP_001991648.1 KEGG: azc:AZC_3889 UreA/short-chain amide transport system substrate-binding protein precursor YP_001991649.1 PFAM: inner-membrane translocator; KEGG: bra:BRADO4857 branched-chain amino acid ABC transporter (permease protein) YP_001991650.1 PFAM: inner-membrane translocator; KEGG: bra:BRADO4856 branched-chain amino acid ABC transporter (permease protein) YP_001991651.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_3205 branched-chain amino acid ABC transporter (ATP-binding protein) YP_001991652.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO4854 branched-chain amino acid ABC transporter (ATP-binding protein) YP_001991653.1 PFAM: Acetamidase/formamidase; KEGG: bbt:BBta_3207 acetamidase/formamidase family protein YP_001991654.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bbt:BBta_3208 nitrilase/cyanide hydratase family protein (carbon-nitrogen hydrolase) YP_001991655.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mrd:Mrad2831_3316 short-chain dehydrogenase/reductase SDR YP_001991656.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: wsu:WS1803 molybdenum transport ATP-binding protein YP_001991657.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; KEGG: azo:azo3846 molybdate transport system substrate-binding protein YP_001991658.1 TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: azo:azo3845 molybdenum ABC transporter permease protein YP_001991659.1 KEGG: bbt:BBta_6055 hypothetical protein YP_001991660.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: smd:Smed_2599 transcriptional regulator, AraC family YP_001991661.1 PFAM: isochorismatase hydrolase; KEGG: isochorismatase hydrolase YP_001991662.1 KEGG: xau:Xaut_4179 hypothetical protein YP_001991664.1 PFAM: Protein of unknown function DUF1847; KEGG: cth:Cthe_2788 hypothetical protein YP_001991665.1 PFAM: ABC transporter inner membrane protein; KEGG: pfl:PFL_0240 D-methionine ABC transporter permease protein YP_001991666.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pap:PSPA7_2912 probable ATP-binding component of ABC transporter YP_001991667.1 PFAM: NLPA lipoprotein; KEGG: pmy:Pmen_2364 NlpA lipoprotein YP_001991668.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: ccr:CC_0945 oxidoreductase, GMC family YP_001991669.1 KEGG: dol:Dole_0559 phenylacetate--CoA ligase YP_001991670.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_B1895 enoyl-CoA hydratase/isomerase YP_001991671.1 KEGG: bja:bll6455 ABC transporter substrate-binding protein YP_001991672.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:bll6454 ABC transporter permease protein YP_001991673.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll6453 ABC transporter ATP-binding protein YP_001991674.1 PFAM: phosphate transporter; KEGG: bra:BRADO6359 low-affinity inorganic phosphate transport protein (PiT family) YP_001991675.1 PFAM: regulatory protein MarR; KEGG: oan:Oant_0083 transcriptional regulator, MarR family YP_001991676.1 KEGG: gbe:GbCGDNIH1_1303 hypothetical protein YP_001991677.1 KEGG: oan:Oant_0082 hypothetical protein YP_001991678.1 KEGG: rso:RS03125 probable transmembrane protein YP_001991679.1 KEGG: bja:blr6106 hypothetical protein YP_001991680.1 PFAM: porin; KEGG: pol:Bpro_5280 hypothetical protein YP_001991681.1 PFAM: lytic transglycosylase; KEGG: bbt:BBta_4695 soluble lytic transglycosylase (SLT) YP_001991682.1 KEGG: bbt:BBta_4232 exported protein of unknown function YP_001991683.1 Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis YP_001991684.1 PFAM: ThiJ/PfpI domain protein; KEGG: bja:bll4280 probable ThiJ/PfpI family protein YP_001991685.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bbt:BBta_4229 transcriptional regulator AraC/XylS family YP_001991686.1 KEGG: bja:bll4656 hypothetical protein YP_001991687.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: bbt:BBta_4223 lipase/esterase YP_001991688.1 KEGG: nha:Nham_1811 hypothetical protein YP_001991689.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: azc:AZC_0903 serine protease YP_001991691.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_001991692.1 KEGG: nha:Nham_3404 hypothetical protein YP_001991693.1 KEGG: rle:pRL110433 hypothetical protein YP_001991694.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: nha:Nham_2192 signal transduction histidine kinase YP_001991695.1 PFAM: response regulator receiver; KEGG: bbt:BBta_4218 two-component response regulator/receiver (CheY-like protein) YP_001991696.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: bbt:BBta_4217 two-component sensor histidine kinase YP_001991697.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_001991698.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: bbt:BBta_4215 acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit YP_001991699.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001991700.1 PFAM: protein of unknown function DUF1236; KEGG: nha:Nham_4145 hypothetical protein YP_001991701.1 KEGG: bbt:BBta_3130 hypothetical protein YP_001991702.1 PFAM: cation efflux protein; KEGG: ppw:PputW619_3985 cation efflux protein YP_001991703.1 PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: bam:Bamb_0559 transcriptional regulator, TetR family YP_001991704.1 PFAM: DSBA oxidoreductase; KEGG: nwi:Nwi_1750 DsbA oxidoreductase YP_001991705.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: maq:Maqu_0381 peroxidase YP_001991706.1 KEGG: nha:Nham_0685 hypothetical protein YP_001991707.1 PFAM: peptidase M48 Ste24p; KEGG: bja:bll4295 hypothetical protein YP_001991708.1 PFAM: aminotransferase class I and II; KEGG: nha:Nham_2183 aminotransferase, class I and II YP_001991709.1 PFAM: BioY protein; KEGG: bja:blr4297 hypothetical protein YP_001991710.1 PFAM: sodium:dicarboxylate symporter; KEGG: bra:BRADO3510 C4-dicarboxylate transport protein YP_001991711.1 KEGG: rrs:RoseRS_0838 hypothetical protein YP_001991712.1 TIGRFAM: ribonuclease, Rne/Rng family; KEGG: bra:BRADO3511 ribonuclease E YP_001991713.1 PFAM: cell wall hydrolase/autolysin; KEGG: bja:blr4306 N-acetylmuramoyl-L-alanine amidase precursor YP_001991714.1 KEGG: nha:Nham_1824 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001991715.1 KEGG: bpm:BURPS1710b_3602 hypothetical protein YP_001991716.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bra:BRADO3517 dehydrogenase, NAD(P)-binding domain YP_001991717.1 PFAM: peptidase M23; KEGG: bja:bll4323 hypothetical protein YP_001991718.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bbt:BBta_3956 hypothetical protein YP_001991719.1 KEGG: nha:Nham_2333 hypothetical protein YP_001991720.1 PFAM: cytochrome B561; KEGG: reh:H16_A3123 cytochrome b561 YP_001991721.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_3959 membrane protein of unknown function YP_001991722.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001991723.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_001991724.1 KEGG: nwi:Nwi_1666 hypothetical protein YP_001991725.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bbt:BBta_3965 cysteine desulfurase (nitrogenase metalloclusters biosynthesis protein NifS) YP_001991726.1 with SufCD activates cysteine desulfurase SufS YP_001991727.1 KEGG: bra:BRADO3542 SufC, related to ABC transporter associated with Fe-S cluster assembly (ATP-binding protein); TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; SMART: ATPase AAA YP_001991728.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: bra:BRADO3543 SufD, needed for FhuF Fe-S center production/stability YP_001991729.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bbt:BBta_3969 cysteine desulfurase YP_001991730.1 TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; KEGG: bja:blr4343 hypothetical protein YP_001991731.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: csa:Csal_3007 glyoxalase/bleomycin resistance protein/dioxygenase YP_001991732.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: nwi:Nwi_1659 HesB/YadR/YfhF YP_001991733.1 KEGG: hch:HCH_03141 hypothetical protein YP_001991734.1 KEGG: mgm:Mmc1_0291 FAD dependent oxidoreductase YP_001991735.1 PFAM: Endoribonuclease L-PSP; KEGG: hha:Hhal_0968 endoribonuclease L-PSP YP_001991736.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT0296 TPR repeat YP_001991737.1 PFAM: TfoX domain protein; KEGG: bra:BRADO3547 conserved hypothetical protein; TfoX N-terminal domain YP_001991738.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bja:bll4347 hypothetical protein YP_001991739.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bja:bll4348 ATP-dependent RNA helicase YP_001991740.1 PFAM: helix-turn-helix- domain containing protein AraC type; regulatory protein LacI; KEGG: bja:blr7666 transcriptional regulatory protein YP_001991741.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bra:BRADO2559 methyl-accepting chemotaxis protein YP_001991742.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: nwi:Nwi_1656 peptidase C14, caspase catalytic subunit P20 YP_001991743.1 SMART: helix-turn-helix domain protein; KEGG: gbe:GbCGDNIH1_1784 DNA-binding protein YP_001991744.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: cak:Caul_3998 NAD-dependent epimerase/dehydratase YP_001991745.1 KEGG: nha:Nham_2319 hypothetical protein YP_001991746.1 KEGG: bra:BRADO3937 conserved hypothetical protein; signal peptide YP_001991747.1 PFAM: plasmid maintenance system killer; KEGG: pla:Plav_0020 plasmid maintenance system killer YP_001991748.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: cbd:COXBU7E912_0533 addiction module antidote protein, HigA family YP_001991749.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001991750.1 PFAM: SNARE associated Golgi protein; KEGG: bja:blr4356 hypothetical protein YP_001991751.1 PFAM: beta-lactamase domain protein; KEGG: bra:BRADO4092 conserved hypothetical protein; metallo-beta-lactamase family protein YP_001991752.1 KEGG: rsp:RSP_0326 hypothetical protein YP_001991753.1 PFAM: Negative transcriptional regulator; KEGG: bbt:BBta_3982 hypothetical protein YP_001991754.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_001991755.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: atc:AGR_C_4253 hypothetical protein YP_001991756.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rle:RL2064 methyltransferase YP_001991757.1 KEGG: nha:Nham_2503 hypothetical protein YP_001991758.1 PFAM: Endoribonuclease L-PSP; KEGG: azc:AZC_0227 translation initiation inhibitor YP_001991759.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bcs:BCAN_A2006 transcriptional regulator, GntR family YP_001991760.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pnu:Pnuc_1182 ABC transporter YP_001991761.1 PFAM: ABC transporter inner membrane protein; KEGG: pnu:Pnuc_1181 ABC transporter inner membrane protein YP_001991762.1 PFAM: NMT1/THI5 like domain protein; KEGG: pnu:Pnuc_1180 ABC transporter periplasmic protein YP_001991763.1 PFAM: Amidase; KEGG: bra:BRADO0324 amidase (AmiD) YP_001991764.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; poly-beta-hydroxybutyrate polymerase domain protein; KEGG: bra:BRADO3568 poly-beta-hydroxybutyrate polymerase YP_001991765.1 KEGG: nha:Nham_2311 hypothetical protein YP_001991766.1 PFAM: aminotransferase class I and II; KEGG: bja:blr4361 aminotransferase YP_001991767.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_001991768.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_001991769.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mrd:Mrad2831_1141 GCN5-related N-acetyltransferase YP_001991770.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bbt:BBta_3998 (S)-2-haloacid dehalogenase YP_001991771.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: bbt:BBta_4000 single-stranded-DNA-specific exonuclease RecJ YP_001991773.1 KEGG: dar:Daro_1033 hypothetical protein YP_001991774.1 TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: bbt:BBta_4006 membrane-bound lytic transglycosylase precursor protein, signal peptide YP_001991775.1 similar to YegS from E. coli YP_001991776.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001991777.1 PFAM: tRNA synthetase class II (D K and N); KEGG: bbt:BBta_4013 lysyl-tRNA synthetase (lysine--tRNA ligase) YP_001991778.1 KEGG: nwi:Nwi_1641 protein of unknown function DUF160; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM domain protein YP_001991779.1 KEGG: nha:Nham_2299 hypothetical protein YP_001991780.1 KEGG: bra:BRADO3591 hypothetical protein YP_001991782.1 PFAM: type IV pilus assembly PilZ; KEGG: bra:BRADO3661 hypothetical protein YP_001991783.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nha:Nham_2145 glyoxalase/bleomycin resistance protein/dioxygenase YP_001991784.1 PFAM: Silent information regulator protein Sir2; KEGG: bja:blr4409 hypothetical protein YP_001991785.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bra:BRADO3673 cold shock protein, DNA binding, CspA-like YP_001991786.1 PFAM: protein of unknown function DUF192; KEGG: bja:blr4411 hypothetical protein YP_001991787.1 PFAM: transcriptional regulator PadR family protein; KEGG: fre:Franean1_5040 transcriptional regulator, PadR-like family YP_001991789.1 PFAM: glycosyl transferase group 1; KEGG: pau:PA14_66230 lipopolysaccharide core biosynthesis protein WaaG YP_001991790.1 KEGG: bja:bll4413 hypothetical protein YP_001991791.1 PFAM: ETC complex I subunit conserved region; KEGG: bra:BRADO3676 ETC complex I subunit conserved region protein (fragment) YP_001991792.1 PFAM: carboxyl transferase; KEGG: nha:Nham_2125 propionyl-CoA carboxylase YP_001991793.1 PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: bja:blr4421 3-methylcrotonyl-CoA carboxylase alpha subunit YP_001991794.1 PFAM: pyruvate carboxyltransferase; KEGG: bja:blr4422 hydroxymethylglutaryl-CoA lyase YP_001991795.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:bll4428 hypothetical protein YP_001991796.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bja:bll4429 hypothetical protein YP_001991797.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:bll4430 hypothetical protein YP_001991798.1 TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: mms:mma_3539 hypothetical protein YP_001991799.1 TIGRFAM: outer membrane insertion C-terminal signal; PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: bja:bll1944 hypothetical protein YP_001991800.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: bja:blr2405 peptidylprolyl isomerase YP_001991802.1 PFAM: protein of unknown function DUF1212; KEGG: rru:Rru_A2596 protein of unknown function DUF1212 YP_001991803.1 KEGG: rru:Rru_A2595 hypothetical protein YP_001991805.1 KEGG: bja:blr5152 hypothetical protein YP_001991806.1 PFAM: FRG domain protein; KEGG: rle:RL1933 conserved hypothetical protein, possible fusion YP_001991807.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: nha:Nham_2078 alpha-2-macroglobulin-like YP_001991808.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: nha:Nham_2077 penicillin-binding protein 1C YP_001991809.1 PFAM: glycosyl transferase family 39; KEGG: bbt:BBta_3917 glycosyl transferase, family 39 YP_001991810.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: bja:blr4441 hypothetical protein YP_001991811.1 PFAM: glycosyl transferase family 2; KEGG: nha:Nham_2075 glycosyl transferase, family 2 YP_001991812.1 PFAM: lipid A biosynthesis domain protein; KEGG: bbt:BBta_3920 membrane protein of unknown function with lipid A disaccharide synthase (N-term) YP_001991814.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: bra:BRADO3914 cystathionine beta-lyase, PLP-dependent (beta-cystathionase) YP_001991815.1 PFAM: extracellular solute-binding protein family 3; KEGG: nha:Nham_2071 extracellular solute-binding protein, family 3 YP_001991816.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: nha:Nham_2070 amino acid ABC transporter permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_001991817.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: nha:Nham_2069 amino acid ABC transporter permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_001991818.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_3926 amino acid transport protein, ATP-binding protein YP_001991820.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis YP_001991821.1 PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: bbt:BBta_3928 cyclopropane-fatty-acyl-phospholipid synthase YP_001991822.1 PFAM: protein of unknown function DUF1365; KEGG: bra:BRADO3907 hypothetical protein YP_001991823.1 PFAM: amine oxidase; KEGG: bbt:BBta_3930 hypothetical protein YP_001991824.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: nha:Nham_2066 RND efflux system, outer membrane lipoprotein, NodT YP_001991825.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO3904 multidrug resistance protein MdtA precursor (multidrug transporter MdtA) YP_001991826.1 PFAM: acriflavin resistance protein; KEGG: bja:blr4457 AcrB/AcrD/AcrF family protein YP_001991827.1 PFAM: acriflavin resistance protein; KEGG: bra:BRADO3902 multidrug resistance protein MdtC (multidrug transporter MdtC) YP_001991828.1 PFAM: DTW domain containing protein; KEGG: nha:Nham_2062 hypothetical protein YP_001991829.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: bca:BCE_0975 alginate O-acetyltransferase YP_001991830.1 KEGG: sfu:Sfum_1130 alginate O-acetyltransferase AlgJ YP_001991831.1 KEGG: bbt:BBta_3938 hypothetical protein YP_001991832.1 KEGG: bra:BRADO3004 conserved hypothetical protein; signal peptide YP_001991833.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: nha:Nham_1787 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_001991834.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: nha:Nham_1826 type I secretion outer membrane protein, TolC YP_001991835.1 KEGG: bja:blr4474 hypothetical protein YP_001991836.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001991837.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bpt:Bpet3619 probable lactoylglutathione lyase YP_001991838.1 KEGG: gur:Gura_0796 hypothetical protein YP_001991839.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_001991840.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001991841.1 PFAM: cyclase/dehydrase; KEGG: nha:Nham_1832 cyclase/dehydrase YP_001991842.1 PFAM: CinA domain protein; KEGG: nha:Nham_1833 CinA-like YP_001991843.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MECDP-synthase; KEGG: nha:Nham_1834 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001991844.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: bja:blr4486 nitrogen regulation protein YP_001991845.1 KEGG: bra:BRADO3867 nitrogen regulation protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001991846.1 KEGG: bbt:BBta_4070 nitrogen assimilation regulatory protein; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; SMART: ATPase AAA YP_001991847.1 KEGG: nha:Nham_1838 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001991848.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: bbt:BBta_4072 nitrogen assimilation regulatory protein YP_001991849.1 catalyzes the transamination of D-amino acids and their alpha-keto acids YP_001991850.1 Stimulates the elongation of poly(A) tails YP_001991851.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: nha:Nham_1842 GTP-binding protein, HSR1-related YP_001991852.1 negatively supercoils closed circular double-stranded DNA YP_001991853.1 KEGG: nha:Nham_1765 hypothetical protein YP_001991854.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001991855.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: bbt:BBta_4368 peptidyl-prolyl cis-trans isomerase A (rotamase A) YP_001991856.1 KEGG: nha:Nham_1768 hypothetical protein YP_001991857.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: bra:BRADO3995 peptidyl prolyl cis-trans isomerase (rotamase B) YP_001991858.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_001991859.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_001991860.1 PFAM: helix-turn-helix domain protein; cupin; KEGG: nwi:Nwi_0662 transcriptional regulator, XRE family YP_001991862.1 KEGG: bra:BRADO5913 ABC transporter substrate-binding protein; aliphatic sulfonates transporter; TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3 YP_001991863.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: bja:bll7007 oxidoreductase YP_001991864.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll7008 aliphatic sulfonate ABC transporter ATP-binding protein YP_001991865.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:bll7009 aliphatic sulfonate ABC transporter permease protein YP_001991866.1 catalyzes the release of sulfite from alkanesulfonates YP_001991867.1 TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: bja:bll7011 ABC transporter aliphatic-sulfonate-binding protein YP_001991868.1 PFAM: radical SAM domain protein; KEGG: rsq:Rsph17025_0775 radical SAM domain protein YP_001991869.1 PFAM: NifH/frxC-family protein; KEGG: rsq:Rsph17025_0774 nitrogenase YP_001991870.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rsq:Rsph17025_0773 oxidoreductase/nitrogenase, component 1 YP_001991871.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rsq:Rsph17025_0772 nitrogenase YP_001991872.1 SMART: extracellular solute-binding protein family 3; KEGG: bcm:Bcenmc03_6201 ABC nitrate/sulfonate/bicarbonate transporter periplasmic ligand binding protein YP_001991873.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: bbt:BBta_2190 choline dehydrogenase, a flavoprotein YP_001991874.1 KEGG: rle:pRL80020 hypothetical protein YP_001991875.1 PFAM: OsmC family protein; KEGG: bja:blr0920 hypothetical protein YP_001991876.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_7645 sulfonate ABC transporter ATP binding protein YP_001991877.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_7646 sulfonate ABC transporter permease protein YP_001991878.1 KEGG: bra:BRADO0531 sulfonate ABC transporter periplasmic binding protein (SsuA/YcbO-like); TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3 YP_001991879.1 PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rru:Rru_A0098 cystathionine gamma-synthase YP_001991880.1 PFAM: alpha/beta hydrolase fold; KEGG: bbt:BBta_2581 hydrolase YP_001991881.1 PFAM: carboxylesterase type B; KEGG: cak:Caul_0584 carboxylesterase type B YP_001991882.1 PFAM: extracellular solute-binding protein family 3; KEGG: rru:Rru_A0779 extracellular solute-binding protein, family 3 YP_001991883.1 PFAM: ABC transporter inner membrane protein; KEGG: rru:Rru_A0780 ABC transporter inner membrane protein YP_001991884.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: rru:Rru_A0781 amino acid ABC transporter permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_001991885.1 KEGG: bxe:Bxe_C0117 ABC nitrate/sulfonate/bicarbonate family transporter periplasmic ligand binding protein YP_001991886.1 PFAM: ABC transporter inner membrane protein; KEGG: bam:Bamb_3677 ABC transporter inner membrane protein YP_001991887.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mex:Mext_1167 ABC transporter YP_001991889.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rru:Rru_A0796 radical SAM YP_001991890.1 KEGG: rru:Rru_A0795 nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein YP_001991891.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0794 nitrogenase YP_001991892.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0793 nitrogenase YP_001991893.1 PFAM: FAD dependent oxidoreductase; KEGG: bbt:BBta_4331 FAD dependent oxidoreductase YP_001991894.1 KEGG: bte:BTH_II1547 L-2-amino-thiazoline-4-carboxylic acid hydrolase YP_001991895.1 PFAM: isochorismatase hydrolase; KEGG: cya:CYA_1918 isochorismatase family protein YP_001991896.1 PFAM: extracellular solute-binding protein family 5; KEGG: rru:Rru_A2014 twin-arginine translocation pathway signal YP_001991897.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spe:Spro_2548 transcriptional regulator, LysR family YP_001991898.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO3960 ABC transporter ATP-binding protein YP_001991899.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_4329 ABC transporter permease protein YP_001991900.1 PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO3958 ABC transporter permease protein YP_001991901.1 PFAM: extracellular solute-binding protein family 5; KEGG: bra:BRADO3957 ABC transporter extracellular substrate binding protein YP_001991902.1 KEGG: xau:Xaut_4367 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001991903.1 KEGG: dac:Daci_1059 hypothetical protein YP_001991904.1 KEGG: bbt:BBta_4362 hypothetical protein YP_001991905.1 KEGG: nha:Nham_1774 hypothetical protein YP_001991906.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr4679 hypothetical protein YP_001991907.1 PFAM: Endoribonuclease L-PSP; KEGG: bja:bll4678 hypothetical protein YP_001991908.1 KEGG: bbt:BBta_4350 hypothetical protein YP_001991909.1 PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1408 antenna complex, alpha/beta subunit YP_001991910.1 PFAM: antenna complex alpha/beta subunit; KEGG: bbt:BBta_3081 light harvesting protein B-800-850 YP_001991911.1 PFAM: glycosyl transferase family 2; KEGG: nha:Nham_1779 glycosyl transferase, family 2 YP_001991912.1 KEGG: nha:Nham_1780 hypothetical protein YP_001991913.1 KEGG: bra:BRADO3757 beta (1-6) glucans synthase, NdvC-like YP_001991914.1 KEGG: nha:Nham_1782 hypothetical protein YP_001991915.1 PFAM: Sporulation domain protein; KEGG: nha:Nham_1783 hypothetical protein YP_001991916.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_001991917.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_001991918.1 PFAM: protein of unknown function DUF502; KEGG: nha:Nham_2056 protein of unknown function DUF502 YP_001991919.1 PFAM: helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: nha:Nham_2055 DEAD/DEAH box helicase-like YP_001991920.1 PFAM: protein of unknown function DUF339; KEGG: bja:bsl4602 hypothetical protein YP_001991921.1 KEGG: bra:BRADO3771 transcription repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001991922.1 KEGG: nha:Nham_2052 hypothetical protein YP_001991923.1 KEGG: bra:BRADO3775 acid-CoA ligase YP_001991924.1 PFAM: extracellular solute-binding protein family 5; KEGG: nwi:Nwi_1510 extracellular solute-binding protein, family 5 YP_001991925.1 PFAM: Invasion associated locus B family protein; KEGG: bja:bll4589 hypothetical protein YP_001991927.1 TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: bja:blr4588 hypothetical protein YP_001991928.1 PFAM: auxin efflux carrier; KEGG: bja:bll4587 malonate transporter YP_001991929.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bja:blr4586 2-octaprenyl-6-methoxyphenyl hydroxylase YP_001991930.1 KEGG: nwi:Nwi_1506 CDP-alcohol phosphatidyltransferase YP_001991931.1 PFAM: Integral membrane protein TerC; KEGG: bja:bll4584 hypothetical protein YP_001991932.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:bll4583 quinone oxidoreductase YP_001991933.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_001991934.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_1913 transcriptional regulator, LysR family YP_001991935.1 PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; KEGG: mms:mma_3086 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component YP_001991936.1 PFAM: ABC transporter inner membrane protein; KEGG: mms:mma_3085 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component YP_001991937.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mms:mma_3084 sulfonate/nitrate transport system ATP-binding protein YP_001991938.1 KEGG: mms:mma_3083 hypothetical protein YP_001991939.1 PFAM: LamB/YcsF family protein; KEGG: bbt:BBta_4134 hypothetical protein YP_001991940.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: nha:Nham_2041 allophanate hydrolase subunit 2 YP_001991941.1 PFAM: Allophanate hydrolase subunit 1; KEGG: nha:Nham_2040 hypothetical protein YP_001991942.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: bbt:BBta_4131 hypothetical protein YP_001991943.1 PFAM: cupin; KEGG: bra:BRADO3800 hypothetical protein YP_001991944.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001991945.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_001991946.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001991947.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bja:bll5069 BcpB protein YP_001991948.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: nha:Nham_2258 uracil-DNA glycosylase superfamily YP_001991949.1 PFAM: protein of unknown function DUF88; KEGG: bja:blr5067 hypothetical protein YP_001991950.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_001991951.1 KEGG: bra:BRADO4468 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase); TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_001991952.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_001991953.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_001991954.1 KEGG: nwi:Nwi_1919 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_001991955.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: bra:BRADO4463 ribonuclease III (modular protein) YP_001991956.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_001991957.1 KEGG: bja:bll5059 hypothetical protein YP_001991958.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_001991959.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: pna:Pnap_0622 NmrA family protein YP_001991960.1 PFAM: helix-turn-helix HxlR type; KEGG: mrd:Mrad2831_0163 transcriptional regulator, HxlR family YP_001991961.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001991962.1 PFAM: Citrate transporter; KEGG: bja:bll7122 hypothetical protein YP_001991964.1 TIGRFAM: Mn2+/Fe2+ transporter NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: bra:BRADO4439 manganese transport protein MntH YP_001991965.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; cupin; KEGG: rru:Rru_A1951 transcriptional regulator, AraC family YP_001991966.1 PFAM: fusaric acid resistance protein conserved region; KEGG: rru:Rru_A1952 fusaric acid resistance protein conserved region YP_001991967.1 PFAM: protein of unknown function DUF1656; KEGG: rru:Rru_A1953 hypothetical protein YP_001991968.1 PFAM: secretion protein HlyD family protein; KEGG: rru:Rru_A1954 secretion protein HlyD YP_001991969.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_001991970.1 PFAM: RDD domain containing protein; KEGG: nha:Nham_2241 hypothetical protein YP_001991971.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001991972.1 KEGG: bbt:BBta_4654 membrane protein of unknown function YP_001991973.1 activates fatty acids by binding to coenzyme A YP_001991974.1 PFAM: regulatory protein MarR; KEGG: bbt:BBta_4653 transcriptional regulatory protein, MarR family YP_001991975.1 KEGG: bja:bsl5035 hypothetical protein YP_001991976.1 KEGG: bja:bsl5034 hypothetical protein YP_001991977.1 KEGG: bbt:BBta_3895 hypothetical protein YP_001991978.1 PFAM: globin; KEGG: oan:Oant_1478 sec-independent protein translocase protein TatC YP_001991979.1 YghU; B2989; one of eight glutathione transferase proteins from E. coli YP_001991982.1 PFAM: methyltransferase type 11; KEGG: sgl:SG0905 biotin synthesis protein BioC YP_001991983.1 PFAM: plasmid stabilization system; KEGG: eba:ebB110 protein of the plasmid stabilization system YP_001991984.1 KEGG: ccr:CC_2879 hypothetical protein YP_001991985.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001991986.1 PFAM: ATP-cone domain protein; KEGG: bja:bll5032 hypothetical protein YP_001991987.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: bja:bll5031 riboflavin biosynthesis protein YP_001991988.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_001991989.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001991990.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_001991991.1 KEGG: mlo:mlr9505 hypothetical protein YP_001991992.1 KEGG: bra:BRADO4424 thiamin-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_001991993.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_001991994.1 KEGG: bra:BRADO3464 hypothetical protein YP_001991995.1 KEGG: bbt:BBta_7678 hypothetical protein YP_001991996.1 PFAM: alpha/beta hydrolase fold; KEGG: noc:Noc_0991 alpha/beta hydrolase fold YP_001991997.1 PFAM: SmpA/OmlA domain protein; KEGG: bja:blr5024 hypothetical protein YP_001991998.1 PFAM: Ubiquinol-cytochrome C chaperone; KEGG: nha:Nham_1583 ubiquinol-cytochrome C chaperone YP_001991999.1 KEGG: bra:BRADO4419 hypothetical protein YP_001992000.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_001992001.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001992002.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_001992003.1 PFAM: regulatory protein MerR; KEGG: bja:bll5018 hypothetical protein YP_001992006.1 PFAM: integrase family protein; KEGG: bja:blr8004 probable site-specific integrase/recombinase YP_001992007.1 KEGG: xau:Xaut_3429 hypothetical protein YP_001992009.1 KEGG: mlo:mll7975 hypothetical protein YP_001992010.1 KEGG: rsp:RSP_4227 hypothetical protein YP_001992011.1 PFAM: NinB family protein; KEGG: aha:AHA_2039 NinB protein YP_001992012.1 PFAM: heat shock protein DnaJ domain protein; KEGG: oan:Oant_1556 heat shock protein DnaJ domain protein YP_001992013.1 PFAM: exonuclease, phage-type; KEGG: xau:Xaut_3679 hypothetical protein YP_001992014.1 KEGG: gox:GOX2479 hypothetical protein YP_001992015.1 PFAM: ERF family protein; KEGG: rsq:Rsph17025_1819 ERF family protein YP_001992025.1 PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: gdi:GDI3658 protease YP_001992029.1 PFAM: Chromosomal replication initiator DnaA domain; KEGG: lhe:lhv_0001 chromosomal replication initiation protein YP_001992031.1 KEGG: nar:Saro_2760 hypothetical protein YP_001992033.1 KEGG: bur:Bcep18194_A5241 hypothetical protein YP_001992036.1 KEGG: mlo:mll0464 bacteriophage packaging protein GP3-like protein YP_001992037.1 KEGG: dac:Daci_1942 phage terminase, large subunit, PBSX family YP_001992039.1 KEGG: azc:AZC_0840 hypothetical protein YP_001992040.1 KEGG: bbt:BBta_5780 hypothetical protein YP_001992041.1 KEGG: bbt:BBta_5779 hypothetical protein YP_001992042.1 KEGG: bbt:BBta_5778 hypothetical protein YP_001992043.1 KEGG: azc:AZC_0841 hypothetical protein YP_001992044.1 KEGG: azc:AZC_0843 hypothetical protein YP_001992045.1 KEGG: azc:AZC_0844 hypothetical protein YP_001992046.1 KEGG: azc:AZC_0845 hypothetical protein YP_001992047.1 KEGG: bbt:BBta_5777 hypothetical protein YP_001992048.1 KEGG: bbt:BBta_5776 hypothetical protein YP_001992049.1 KEGG: bbt:BBta_5775 hypothetical protein YP_001992050.1 KEGG: bbt:BBta_5772 hypothetical protein YP_001992051.1 KEGG: lma:LmjF35.0520 proteophosphoglycan ppg4 YP_001992052.1 KEGG: rle:RL3926 hypothetical protein YP_001992054.1 PFAM: BRO domain protein; KEGG: saq:Sare_3791 prophage antirepressor YP_001992055.1 KEGG: pde:Pden_3770 hypothetical protein YP_001992056.1 KEGG: bbt:BBta_5767 phage tail collar domain YP_001992058.1 PFAM: glycoside hydrolase family 24; KEGG: csa:Csal_1392 glycoside hydrolase, family 24 YP_001992059.1 KEGG: nha:Nham_3316 hypothetical protein YP_001992063.1 KEGG: bja:bsl4534 hypothetical protein YP_001992065.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bra:BRADO2299 ferric siderophore receptor protein precursor; signal peptide YP_001992066.1 KEGG: bbt:BBta_7560 membrane protein of unknown function YP_001992068.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll4986 short chain dehydrogenase YP_001992069.1 PFAM: protein of unknown function DUF169; KEGG: bja:bll4979 hypothetical protein YP_001992070.1 TIGRFAM: undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: bra:BRADO4231 bacterial sugar transferase family protein YP_001992071.1 PFAM: glycosyl transferase group 1; KEGG: nha:Nham_2465 glycosyl transferase, group 1 YP_001992072.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: bja:bll4972 probable succinoglycan transport protein YP_001992073.1 KEGG: bra:BRADO4228 conserved hypothetical protein; acyl-CoA N-acyltransferase related protein YP_001992074.1 PFAM: polysaccharide deacetylase; KEGG: bra:BRADO4227 polysaccharide deacetylase YP_001992075.1 PFAM: Ferritin Dps family protein; KEGG: eba:ebA1978 DNA-binding ferritin-like protein (oxidative damage protectant) YP_001992076.1 KEGG: bra:BRADO1425 conserved hypothetical protein; signal peptide YP_001992077.1 KEGG: bra:BRADO4226 hypothetical protein YP_001992078.1 PFAM: cytochrome oxidase assembly; KEGG: bja:bll4968 cytochrome oxidase assembly factor YP_001992079.1 PFAM: regulatory protein TetR; KEGG: hne:HNE_2415 transcriptional regulator, TetR family YP_001992080.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: mjl:Mjls_2332 thiamine pyrophosphate enzyme TPP binding domain protein YP_001992081.1 KEGG: aby:ABAYE3100 zinc-binding dehydrogenase YP_001992082.1 PFAM: protein of unknown function DUF1211; KEGG: bbt:BBta_5128 membrane protein of unknown function YP_001992083.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol YP_001992084.1 KEGG: bja:blr4966 hypothetical protein YP_001992085.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001992086.1 PFAM: thioesterase superfamily protein; KEGG: bja:bll4964 hypothetical protein YP_001992087.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001992088.1 forms a direct contact with the tRNA during translation YP_001992089.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bja:bll4961 hypothetical protein YP_001992090.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bbt:BBta_4588 hypothetical protein YP_001992091.1 PFAM: protein of unknown function UPF0118; KEGG: nha:Nham_2235 protein of unknown function UPF0118 YP_001992092.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: nha:Nham_2012 rare lipoprotein A YP_001992093.1 PFAM: alpha/beta hydrolase fold; KEGG: bja:blr4520 epoxide hydrolase YP_001992094.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: bja:bll4519 penicillin binding protein YP_001992095.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_001992096.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_001992097.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001992098.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: nwi:Nwi_1461 TatD-related deoxyribonuclease YP_001992099.1 KEGG: nha:Nham_2006 hypothetical protein YP_001992100.1 activates fatty acids by binding to coenzyme A YP_001992101.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbt:BBta_4095 TRAP-type C4-dicarboxylate transport system, fusion of small and large permease proteins (DctQ/DctM domains) YP_001992102.1 TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:blr4511 probable ABC transporter substrate-binding protein YP_001992103.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: xau:Xaut_4967 protein of unknown function DUF125 transmembrane YP_001992104.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: bbr:BB1784 flavocytochrome YP_001992105.1 KEGG: xau:Xaut_1368 hypothetical protein YP_001992106.1 KEGG: bja:blr6772 hypothetical protein YP_001992107.1 KEGG: cak:Caul_0471 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_001992108.1 PFAM: methyltransferase type 11; KEGG: gur:Gura_3509 methyltransferase type 11 YP_001992109.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+ YP_001992110.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_001992111.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_001992112.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_001992113.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_001992114.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: net:Neut_1702 monovalent cation/H+ antiporter subunit G YP_001992115.1 PFAM: alanine racemase domain protein; KEGG: rru:Rru_A1141 hypothetical protein YP_001992116.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001992117.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rru:Rru_A1143 regulatory protein GntR YP_001992118.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: rru:Rru_A1144 benzoate membrane transport protein YP_001992119.1 TIGRFAM: pyridoxal kinase; PFAM: phosphomethylpyrimidine kinase type-1; KEGG: rru:Rru_A1145 pyridoxal kinase YP_001992120.1 PFAM: Collagen triple helix repeat; KEGG: mex:Mext_0878 collagen triple helix repeat YP_001992121.1 PFAM: UvrD/REP helicase; KEGG: nha:Nham_3768 UvrD/REP helicase YP_001992122.1 KEGG: gvi:gll2745 hypothetical protein YP_001992123.1 KEGG: bja:blr4499 hypothetical protein YP_001992124.1 KEGG: bbt:BBta_4085 nitrile hydratase subunit alpha (nitrilase) (NHase); TIGRFAM: nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase alpha chain YP_001992125.1 PFAM: nitrile hydratase beta subunit; KEGG: bra:BRADO3846 nitrile hydratase subunit beta (nitrilase) (NHase) YP_001992126.1 KEGG: bja:bll4496 hypothetical protein YP_001992127.1 KEGG: mlo:mll2082 hypothetical protein YP_001992128.1 PFAM: beta-lactamase; KEGG: bja:blr5541 hypothetical protein YP_001992129.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: bja:blr4495 hypothetical protein YP_001992130.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_001992131.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: bbt:BBta_7487 inner membrane protein (UPF0053 family) with 2 CBS domains YP_001992132.1 KEGG: art:Arth_0893 hypothetical protein YP_001992133.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_001992134.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: nwi:Nwi_1567 outer-membrane protein precursor YP_001992135.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_001992136.1 KEGG: stp:Strop_1997 hypothetical protein YP_001992137.1 KEGG: nha:Nham_2096 hypothetical protein YP_001992138.1 KEGG: swd:Swoo_4747 methionine sulfoxide reductase A YP_001992139.1 PFAM: protein of unknown function DUF433; KEGG: bja:bsl4703 hypothetical protein YP_001992140.1 PFAM: ion transport protein; ion transport 2 domain protein; KEGG: mex:Mext_1106 ion transport 2 domain protein YP_001992141.1 KEGG: bja:blr4716 hypothetical protein YP_001992142.1 KEGG: bja:bsr4721 hypothetical protein YP_001992143.1 PFAM: thioesterase superfamily protein; KEGG: pla:Plav_2975 thioesterase superfamily protein YP_001992144.1 KEGG: bbt:BBta_4393 hypothetical protein YP_001992145.1 KEGG: bja:blr4723 hypothetical protein YP_001992146.1 PFAM: protein of unknown function DUF1127; KEGG: bja:bsr4726 hypothetical protein YP_001992147.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_001992148.1 KEGG: bja:bll4732 phytoene synthase YP_001992149.1 PFAM: protein of unknown function DUF498; KEGG: bbt:BBta_4404 hypothetical protein YP_001992150.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_001992151.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_001992152.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: bra:BRADO4036 preprotein translocase (YajC) YP_001992153.1 PFAM: protein of unknown function DUF815; KEGG: bbt:BBta_4408 ATPase family protein YP_001992154.1 KEGG: bja:bll1872 hypothetical protein YP_001992155.1 KEGG: bja:blr5741 hypothetical protein YP_001992156.1 PFAM: alpha/beta hydrolase fold; transcriptional activator domain; KEGG: bja:bll5740 hypothetical protein YP_001992157.1 PFAM: peptidoglycan-binding LysM; peptidase M23; KEGG: nha:Nham_1795 peptidase M23B YP_001992158.1 KEGG: nha:Nham_1794 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase type 11 YP_001992159.1 PFAM: response regulator receiver; KEGG: bbt:BBta_4411 response regulator receiver (CheY-like protein) YP_001992160.1 PFAM: protein of unknown function UPF0157; KEGG: lsp:Bsph_3139 UPF0157 protein YP_001992161.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001992162.1 PFAM: SCP-like extracellular; KEGG: bbt:BBta_6058 hypothetical protein YP_001992163.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001992164.1 KEGG: azc:AZC_2096 autotransporter YP_001992165.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: bja:bll4749 sec-independent protein translocase protein YP_001992166.1 KEGG: bja:bll4750 sec-independent protein translocase protein YP_001992167.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_001992168.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: bra:BRADO4048 hypothetical protein YP_001992169.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: bja:bll4753 hypothetical protein YP_001992170.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: bja:bll4754 glycosyl hydrolase YP_001992171.1 PFAM: Sporulation domain protein; KEGG: nha:Nham_1759 sporulation related YP_001992172.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001992173.1 KEGG: bja:bll4758 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001992174.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bja:blr4759 hypothetical protein YP_001992175.1 KEGG: bja:blr7173 methyl accepting chemotaxis protein YP_001992176.1 KEGG: fph:Fphi_0374 hypothetical protein YP_001992177.1 KEGG: pst:PSPTO_2262 hypothetical protein YP_001992178.1 KEGG: pst:PSPTO_2262 hypothetical protein YP_001992179.1 PFAM: helix-turn-helix domain protein; KEGG: ret:RHE_PF00441 hypothetical protein YP_001992180.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bbt:BBta_4438 exodeoxyribonuclease III YP_001992181.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nha:Nham_1754 Sel1-like YP_001992183.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_001992184.1 KEGG: nha:Nham_1751 branched-chain alpha-keto acid dehydrogenase subunit E2; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein YP_001992185.1 KEGG: bbt:BBta_4461 hypothetical protein YP_001992186.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase YP_001992187.1 KEGG: bra:BRADO4087 pyruvate dehydrogenase E1 component, alpha subunit; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component YP_001992188.1 PFAM: Septum formation initiator; KEGG: bja:bll4786 hypothetical protein YP_001992189.1 PFAM: NADPH-dependent FMN reductase; KEGG: nha:Nham_1747 NADPH-dependent FMN reductase YP_001992190.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_3236 L-carnitine dehydratase/bile acid-inducible protein F YP_001992191.1 PFAM: lysine exporter; KEGG: mlo:mlr8191 hypothetical protein YP_001992193.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_4470 alcohol dehydrogenase-like protein GroES-like domain/NAD(P)-binding Rossmann-fold domain YP_001992194.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001992195.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_001992196.1 KEGG: bja:bll1339 hypothetical protein YP_001992197.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_001992198.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_001992199.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_4473 permease of the major facilitator superfamily YP_001992200.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_001992201.1 KEGG: azc:AZC_3066 hypothetical protein YP_001992202.1 PFAM: NIPSNAP family containing protein; KEGG: bbt:BBta_4475 hypothetical protein YP_001992203.1 KEGG: swi:Swit_1213 protein of unknown function DUF497 YP_001992204.1 KEGG: mex:Mext_0337 hypothetical protein YP_001992206.1 PFAM: hypothetical protein; KEGG: nwi:Nwi_1832 hypothetical protein YP_001992208.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001992209.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: bra:BRADO4104 preprotein translocase subunit SecG YP_001992210.1 PFAM: triosephosphate isomerase; KEGG: bja:bll4807 triosephosphate isomerase YP_001992211.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bja:blr4808 probable peptidyl-prolyl cis-trans isomerse YP_001992212.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001992213.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_001992214.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_001992215.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bja:blr3815 cation-transporting ATPase YP_001992217.1 KEGG: nwi:Nwi_1114 hypothetical protein YP_001992218.1 PFAM: heat shock protein Hsp20; KEGG: pde:Pden_3146 heat shock protein HSP20 YP_001992219.1 PFAM: type IV pilus assembly PilZ; KEGG: bja:bsr0173 hypothetical protein YP_001992220.1 PFAM: OmpA/MotB domain protein; KEGG: bbt:BBta_3511 chemotaxis protein MotB YP_001992221.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bra:BRADO4115 haloacid dehalogenase-like hydrolase YP_001992222.1 KEGG: thioesterase superfamily; K07107 YP_001992223.1 KEGG: chu:CHU_2313 rifampin ADP-ribosylating transferase YP_001992224.1 KEGG: scl:sce2975 hypothetical protein YP_001992225.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: bja:blr4825 molybdopterin biosynthesis protein YP_001992226.1 Represses a number of genes involved in the response to DNA damage YP_001992227.1 PFAM: ComEC/Rec2-related protein; KEGG: bja:bll4830 hypothetical protein YP_001992228.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001992229.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001992230.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_001992231.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: nha:Nham_3264 CMP/dCMP deaminase, zinc-binding YP_001992232.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_001992233.1 PFAM: protein of unknown function DUF1009; KEGG: nha:Nham_1706 protein of unknown function DUF1009 YP_001992234.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_001992235.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_001992236.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_001992237.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: bbt:BBta_4509 exported protein of unknown function with surface antigen domain YP_001992238.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: nwi:Nwi_1852 peptidase M50, membrane-associated zinc metallopeptidase YP_001992239.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001992240.1 PFAM: phosphatidate cytidylyltransferase; KEGG: nha:Nham_1699 phosphatidate cytidylyltransferase YP_001992241.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_001992242.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001992243.1 Catalyzes the phosphorylation of UMP to UDP YP_001992244.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_001992245.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001992246.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: bja:bll4862 hypothetical protein YP_001992247.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_001992248.1 KEGG: bra:BRADO4146 hypothetical protein YP_001992249.1 KEGG: nha:Nham_2194 hypothetical protein YP_001992250.1 KEGG: nha:Nham_2194 hypothetical protein YP_001992251.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2195 ABC transporter YP_001992252.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: nha:Nham_2196 lipoprotein releasing system, transmembrane protein, LolC/E family YP_001992253.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001992254.1 PFAM: copper resistance protein CopC; copper resistance D domain protein; KEGG: nha:Nham_2198 copper resistance D YP_001992255.1 PFAM: nuclear export factor GLE1; KEGG: nha:Nham_2199 nuclear export factor GLE1 YP_001992256.1 PFAM: protein of unknown function DUF461; KEGG: bja:bll4880 hypothetical protein YP_001992257.1 KEGG: nha:Nham_2202 hypothetical protein YP_001992258.1 PFAM: protein of unknown function DUF1467; KEGG: bra:BRADO4167 hypothetical protein YP_001992259.1 KEGG: bbt:BBta_4545 glyoxalase I family protein; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_001992260.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bra:BRADO4169 hydrolase of the metallo-beta-lactamase superfamily YP_001992261.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: bja:bll4903 biotin--protein ligase YP_001992262.1 Catalyzes the transfer of electrons from NADH to quinone YP_001992263.1 Catalyzes the transfer of electrons from NADH to quinone YP_001992264.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_001992265.1 Catalyzes the transfer of electrons from NADH to quinone YP_001992266.1 Catalyzes the transfer of electrons from NADH to quinone YP_001992267.1 Catalyzes the transfer of electrons from NADH to quinone YP_001992268.1 Catalyzes the transfer of electrons from NADH to quinone YP_001992269.1 Catalyzes the transfer of electrons from NADH to quinone YP_001992270.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase YP_001992271.1 KEGG: bra:BRADO4180 hypothetical protein YP_001992272.1 Catalyzes the transfer of electrons from NADH to quinone YP_001992273.1 TIGRFAM: methyltransferase FkbM family; KEGG: bja:bll4915 hypothetical protein YP_001992274.1 Catalyzes the transfer of electrons from NADH to quinone YP_001992275.1 Catalyzes the transfer of electrons from NADH to quinone YP_001992276.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_001992277.1 Catalyzes the transfer of electrons from NADH to quinone YP_001992278.1 KEGG: bja:bsl2206 hypothetical protein YP_001992279.1 PFAM: histone family protein DNA-binding protein; KEGG: nha:Nham_2223 histone-like DNA-binding protein YP_001992280.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_001992281.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mrd:Mrad2831_4789 efflux transporter RND family, MFP subunit YP_001992282.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: azc:AZC_3305 hydrophobe/amphiphile efflux-1 YP_001992283.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bja:blr0364 hypothetical protein YP_001992284.1 KEGG: bra:BRADO4196 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA; ATPase AAA; SMART: ATPase AAA YP_001992285.1 binds and unfolds substrates as part of the ClpXP protease YP_001992286.1 PFAM: peptidase S14 ClpP; KEGG: bbt:BBta_4573 ATP-dependent Clp protease proteolytic subunit (endopeptidase Clp) YP_001992287.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_001992288.1 KEGG: atu:Atu1192 transcriptional regulator, MarR family YP_001992289.1 PFAM: multicopper oxidase type 1; multicopper oxidase type 2; KEGG: nha:Nham_2231 twin-arginine translocation pathway signal YP_001992290.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: bra:BRADO4203 conserved hypothetical protein; YjeF-related protein; kinase, ribokinase-like superfamily YP_001992291.1 PFAM: nitrogen regulatory protein P-II; KEGG: bja:blr4948 nitrogen regulatory protein PII YP_001992292.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: nha:Nham_2234 glutamine synthetase, type I YP_001992293.1 PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: hne:HNE_1537 transcriptional regulator, TetR family YP_001992294.1 KEGG: xau:Xaut_4923 hypothetical protein YP_001992295.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_001992296.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_001992297.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_001992298.1 KEGG: nwi:Nwi_1498 hypothetical protein YP_001992299.1 PFAM: Amidase; KEGG: nar:Saro_3602 amidase YP_001992300.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bbt:BBta_4121 phosphoglycerate dehydrogenase YP_001992301.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr4275 hypothetical transport protein YP_001992302.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001992303.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mex:Mext_1865 CMP/dCMP deaminase zinc-binding YP_001992304.1 KEGG: nwi:Nwi_1574 hypothetical protein YP_001992309.1 KEGG: ret:RHE_CH01107 hypothetical protein YP_001992310.1 KEGG: rci:RRC34 hypothetical protein YP_001992312.1 KEGG: xau:Xaut_3722 hypothetical protein YP_001992313.1 KEGG: smd:Smed_1639 hypothetical protein YP_001992314.1 KEGG: acr:Acry_0904 peptidase M23B YP_001992319.1 KEGG: rsh:Rsph17029_0630 hypothetical protein YP_001992320.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_5148 GCN5-related N-acetyltransferase YP_001992321.1 KEGG: rsp:RSP_2992 hypothetical protein YP_001992322.1 KEGG: rsq:Rsph17025_2088 hypothetical protein YP_001992323.1 KEGG: nha:Nham_1606 hypothetical protein YP_001992324.1 KEGG: rsq:Rsph17025_2090 hypothetical protein YP_001992325.1 KEGG: rsq:Rsph17025_2091 hypothetical protein YP_001992326.1 KEGG: rsq:Rsph17025_2092 hypothetical protein YP_001992328.1 KEGG: rsq:Rsph17025_2093 hypothetical protein YP_001992329.1 TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis ( tail completion) protein; KEGG: pol:Bpro_3785 phage virion morphogenesis ( tail completion) protein YP_001992330.1 PFAM: protein of unknown function DUF1320; KEGG: rsq:Rsph17025_2094 protein of unknown function DUF1320 YP_001992332.1 KEGG: son:SO_0676 hypothetical protein YP_001992333.1 KEGG: rsq:Rsph17025_2096 Mu-like prophage major head subunit gpT-like protein YP_001992334.1 KEGG: rsq:Rsph17025_2097 hypothetical protein YP_001992335.1 KEGG: rsq:Rsph17025_2098 Mu-like prophage I protein-like protein YP_001992337.1 PFAM: peptidase S24 and S26 domain protein; KEGG: bbt:BBta_5832 LexA repressor YP_001992338.1 KEGG: xau:Xaut_3691 transcriptional regulator, XRE family YP_001992340.1 KEGG: xau:Xaut_4526 hypothetical protein YP_001992342.1 PFAM: Integrase catalytic region; MuA-transposase/repressor protein CI DNA-binding; Transposase-like Mu; KEGG: azc:AZC_2128 transposase protein A YP_001992344.1 KEGG: azc:AZC_2129 transposase protein B YP_001992345.1 KEGG: azc:AZC_2130 hypothetical protein YP_001992346.1 KEGG: mag:amb0449 hypothetical protein YP_001992349.1 PFAM: Mu Gam family protein; KEGG: mag:amb0454 Mu-like prophage FluMu host-nuclease inhibitor protein Gam YP_001992350.1 PFAM: LexA DNA-binding domain protein; KEGG: zmo:ZMO0199 LexA repressor YP_001992351.1 PFAM: Chromosomal replication initiator DnaA domain; KEGG: gbe:GbCGDNIH1_0161 chromosomal replication initiator protein DnaA YP_001992352.1 PFAM: protein of unknown function DUF1018; KEGG: azc:AZC_2134 Mu-like prophage protein GP16 YP_001992354.1 PFAM: GcrA cell cycle regulator; KEGG: nwi:Nwi_0512 GcrA cell cycle regulator YP_001992356.1 KEGG: bbr:BB1671 phage-related hypothetical protein YP_001992357.1 KEGG: rsq:Rsph17025_2113 hypothetical protein YP_001992358.1 KEGG: nha:Nham_1609 hypothetical protein YP_001992359.1 PFAM: protein of unknown function DUF847; KEGG: mlo:mlr8035 hypothetical protein YP_001992360.1 KEGG: nha:Nham_3316 hypothetical protein YP_001992362.1 KEGG: azc:AZC_2139 hypothetical protein YP_001992363.1 KEGG: azc:AZC_2140 hypothetical protein YP_001992364.1 KEGG: azc:AZC_2141 Mu-like prophage FluMu protein GP27 YP_001992366.1 KEGG: nwi:Nwi_1551 hypothetical protein YP_001992368.1 KEGG: azc:AZC_2142 Mu-like prophage FluMu protein GP28 YP_001992370.1 PFAM: protein of unknown function DUF935; KEGG: rsq:Rsph17025_2101 protein of unknown function DUF935 YP_001992371.1 TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; KEGG: hdu:HD1557 bacteriophage Mu GP30-like protein YP_001992372.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: cvi:CV_0893 probable 5-carboxymethyl-2-hydroxymuconate D-isomerase YP_001992373.1 KEGG: bja:bll3359 hypothetical protein YP_001992374.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bay:RBAM_024110 YrkN YP_001992375.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ajs:Ajs_1159 alcohol dehydrogenase, zinc-binding domain protein YP_001992376.1 KEGG: bbt:BBta_3325 hypothetical protein YP_001992377.1 KEGG: bja:bll8056 hypothetical protein YP_001992378.1 KEGG: bra:BRADO3437 hypothetical protein YP_001992379.1 PFAM: protein of unknown function UPF0126; KEGG: nmu:Nmul_A0854 hypothetical protein YP_001992380.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV2178 transcriptional regulator, LysR family YP_001992381.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: azc:AZC_1309 NADH dehydrogenase YP_001992382.1 KEGG: azc:AZC_1310 hypothetical protein YP_001992383.1 KEGG: bja:bsr6783 hypothetical protein YP_001992384.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: bja:blr6784 dihydrodipicolinate synthase YP_001992385.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: pla:Plav_0190 PTS IIA-like nitrogen-regulatory protein PtsN YP_001992386.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:bll6775 two-component response regulator YP_001992387.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: bbt:BBta_6335 sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation YP_001992388.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex YP_001992389.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001992390.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001992391.1 TIGRFAM: K+-transporting ATPase, F subunit; PFAM: K+transporting ATPase F subunit; KEGG: bra:BRADO5831 conserved hypothetical protein; potassium-transporting ATPase, KdpF subunit YP_001992394.1 PFAM: K potassium transporter; KEGG: bra:BRADO4684 low affinity potassium transporter (Kup family) YP_001992395.1 PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1407 antenna complex, alpha/beta subunit YP_001992396.1 PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1408 antenna complex, alpha/beta subunit YP_001992397.1 KEGG: nve:NEMVE_v1g94016 predicted protein Pfam: Extensin_2 PROSITE: LEU_RICH PRO_RICH YP_001992398.1 PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1408 antenna complex, alpha/beta subunit YP_001992399.1 PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1407 antenna complex, alpha/beta subunit YP_001992400.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bbt:BBta_3079 two-component transcriptional regulator, LuxR family YP_001992401.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: ava:Ava_1003 multi-sensor signal transduction histidine kinase YP_001992402.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: ana:all2899 phytochrome-like protein, two-component sensor YP_001992403.1 PFAM: response regulator receiver; KEGG: amr:AM1_1726 response regulator YP_001992404.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: bbt:BBta_3080 bacteriophytochrome YP_001992405.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pla:Plav_0714 transporter hydrophobe/amphiphile efflux-1 (HAE1) family YP_001992406.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aav:Aave_1362 efflux transporter RND family, MFP subunit YP_001992407.1 PFAM: regulatory protein TetR; KEGG: afw:Anae109_3254 transcriptional regulator, TetR family YP_001992408.1 PFAM: aldo/keto reductase; KEGG: azc:AZC_4153 aldo/keto reductase YP_001992409.1 KEGG: bja:bll5535 hypothetical protein YP_001992410.1 KEGG: bja:bsr4396 hypothetical protein YP_001992411.1 PFAM: Abortive infection protein; KEGG: ava:Ava_C0052 abortive infection protein YP_001992412.1 PFAM: K potassium transporter; KEGG: dar:Daro_1184 K+ potassium transporter YP_001992413.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: bja:blr4172 hypothetical protein YP_001992414.1 PFAM: protein of unknown function DUF1328; KEGG: bja:bsl5717 hypothetical protein YP_001992415.1 KEGG: nwi:Nwi_1581 hypothetical protein YP_001992416.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bra:BRADO3385 acetyltransferase (GNAT) family YP_001992417.1 PFAM: thioesterase superfamily protein; KEGG: bra:BRADO3384 conserved hypothetical protein; phenylacetic acid degradation-related protein YP_001992418.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_001992419.1 KEGG: bra:BRADO3381 hypothetical protein YP_001992423.1 PFAM: CreA family protein; KEGG: nha:Nham_2105 CreA YP_001992424.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:bll4150 hypothetical protein YP_001992425.1 PFAM: polysaccharide deacetylase; KEGG: nha:Nham_2107 polysaccharide deacetylase YP_001992426.1 KEGG: nha:Nham_2108 hypothetical protein YP_001992427.1 PFAM: DoxX family protein; KEGG: nha:Nham_2109 DoxX YP_001992428.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_001992429.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001992430.1 PFAM: protein of unknown function UPF0061; KEGG: bra:BRADO3358 hypothetical protein YP_001992431.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: bra:BRADO3356 ribonuclease D (RNase D) YP_001992432.1 PFAM: protein of unknown function UPF0187; KEGG: xau:Xaut_4544 protein of unknown function UPF0187 YP_001992433.1 PFAM: Ppx/GppA phosphatase; KEGG: bja:bll4121 hypothetical protein YP_001992434.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_001992435.1 KEGG: bja:bll4123 hypothetical protein YP_001992436.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: nha:Nham_2117 CDP-alcohol phosphatidyltransferase YP_001992437.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001992438.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: bra:BRADO3345 phosphoribosylglycinamide formyltransferase (GarT) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase) YP_001992439.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: nwi:Nwi_1599 cold-shock protein, DNA-binding YP_001992440.1 KEGG: bja:blr1556 hypothetical protein YP_001992441.1 KEGG: bja:blr4120 hypothetical protein YP_001992442.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_001992443.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2336 ABC transporter YP_001992444.1 KEGG: nha:Nham_2337 hypothetical protein YP_001992445.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_001992446.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_001992447.1 PFAM: permease YjgP/YjgQ family protein; KEGG: nha:Nham_2340 permease YjgP/YjgQ YP_001992448.1 PFAM: permease YjgP/YjgQ family protein; KEGG: nha:Nham_2341 permease YjgP/YjgQ YP_001992449.1 PFAM: organic solvent tolerance protein; KEGG: nha:Nham_2342 organic solvent tolerance protein YP_001992450.1 PFAM: SurA domain; KEGG: nha:Nham_2343 hypothetical protein YP_001992451.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_001992452.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001992453.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:bll4101 NAD-dependent alcohol dehydrogenase YP_001992454.1 KEGG: bbt:BBta_2331 exported protein of unknown function YP_001992455.1 Essential for recycling GMP and indirectly, cGMP YP_001992456.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: bja:blr4087 hypothetical protein YP_001992457.1 PFAM: aminodeoxychorismate lyase; KEGG: nha:Nham_2350 aminodeoxychorismate lyase YP_001992458.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_001992459.1 carries the fatty acid chain in fatty acid biosynthesis YP_001992460.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nha:Nham_2353 3-oxoacyl-(acyl-carrier-protein) reductase YP_001992461.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: bra:BRADO3310 malonyl CoA-acyl carrier protein transacylase (MCT) YP_001992462.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rme:Rmet_3745 diguanylate cyclase (GGDEF domain) YP_001992463.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001992464.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001992465.1 KEGG: nha:Nham_2414 hypothetical protein YP_001992466.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001992467.1 KEGG: bja:blr4073 hypothetical protein YP_001992468.1 PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: nha:Nham_2287 cyclopropane-fatty-acyl-phospholipid synthase YP_001992469.1 KEGG: nha:Nham_2288 hypothetical protein YP_001992470.1 unwinds double stranded DNA YP_001992471.1 KEGG: nha:Nham_2290 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_001992472.1 KEGG: bbt:BBta_5835 exported protein of unknown function YP_001992473.1 KEGG: bbt:BBta_1317 membrane protein of unknown function YP_001992474.1 KEGG: xau:Xaut_1872 hypothetical protein YP_001992475.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001992476.1 PFAM: Colicin V production protein; KEGG: bja:bll4061 colicin V production protein YP_001992477.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_001992478.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nwi:Nwi_2019 short-chain dehydrogenase/reductase SDR YP_001992479.1 KEGG: bbt:BBta_3779 ABC transporter substrate-binding protein YP_001992480.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:blr4054 tetracycline resistance protein YP_001992481.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001992482.1 KEGG: bbt:BBta_3775 exported protein of unknown function YP_001992483.1 KEGG: bja:blr4050 hypothetical protein YP_001992484.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_001992485.1 PFAM: NnrUfamily protein; KEGG: bja:blr4047 hypothetical protein YP_001992486.1 PFAM: conserved hypothetical protein; KEGG: bpt:Bpet0511 secreted protein YP_001992487.1 KEGG: dar:Daro_1769 hypothetical protein YP_001992488.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: bra:BRADO4482 hypothetical protein YP_001992489.1 KEGG: aba:Acid345_0548 hypothetical protein YP_001992490.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: nwi:Nwi_1997 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001992491.1 PFAM: Patatin; KEGG: nha:Nham_2273 patatin YP_001992492.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: mlo:mlr9681 sensory transduction histidine kinase YP_001992493.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001992494.1 KEGG: bte:BTH_II1355 pANL12 YP_001992495.1 KEGG: nha:Nham_2276 hypothetical protein YP_001992496.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_001992497.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: nha:Nham_2278 2-nitropropane dioxygenase, NPD YP_001992498.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_001992499.1 PFAM: SEC-C motif domain protein; KEGG: gur:Gura_0182 sec-C motif domain protein YP_001992500.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:bll5097 acyl CoA dehydrogenase YP_001992501.1 TIGRFAM: indolepyruvate/phenylpyruvate decarboxylase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bbt:BBta_0512 indole-3-pyruvate decarboxylase YP_001992502.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001992503.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_001992504.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_001992505.1 KEGG: xla:397773 ribonucleoprotein Pfam: RRM_1 GRP Collagen PROSITE: GLY_RICH RRM YP_001992506.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: bja:blr5104 DNA processing protein YP_001992507.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: mag:amb1065 predicted membrane protein YP_001992508.1 KEGG: fps:FP1412 probable sugar O-acetyltransferase precursor YP_001992509.1 KEGG: nwi:Nwi_1711 hypothetical protein YP_001992510.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_001992511.1 KEGG: nha:Nham_2438 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein YP_001992512.1 PFAM: protein of unknown function DUF983; KEGG: bbt:BBta_4735 hypothetical protein YP_001992513.1 PFAM: NUDIX hydrolase; KEGG: bbt:BBta_4736 NUDIX hydrolase YP_001992514.1 PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A3477 major facilitator superfamily MFS_1 YP_001992515.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001992516.1 involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP YP_001992517.1 PFAM: response regulator receiver; KEGG: bja:bll5124 two-component response regulator YP_001992518.1 KEGG: bra:BRADO4522 hypothetical protein YP_001992519.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_001992520.1 PFAM: Domain of unknown function DUF1849; KEGG: nha:Nham_2446 hypothetical protein YP_001992521.1 PFAM: Endoribonuclease L-PSP; KEGG: nwi:Nwi_1427 endoribonuclease L-PSP YP_001992522.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: bja:blr5133 hypothetical protein YP_001992523.1 PFAM: protein of unknown function DUF482; KEGG: bja:blr5134 hypothetical protein YP_001992524.1 PFAM: histidine triad (HIT) protein; KEGG: bja:blr5135 hypothetical protein YP_001992525.1 PFAM: protein of unknown function UPF0066; KEGG: nha:Nham_2452 protein of unknown function UPF0066 YP_001992526.1 KEGG: bbt:BBta_4760 membrane protein of unknown function YP_001992527.1 PFAM: AzlC family protein; KEGG: bja:bll5138 hypothetical protein YP_001992528.1 PFAM: type IV pilus assembly PilZ; KEGG: bbt:BBta_7466 hypothetical protein YP_001992529.1 PFAM: Sporulation domain protein; lytic transglycosylase; KEGG: bja:bll5139 probable transglycosylase YP_001992530.1 KEGG: aav:Aave_0600 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family YP_001992531.1 KEGG: bra:BRADO4545 ATP-dependent specificity subunit of ClpA-ClpP serine protease; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA; Clp domain protein; ATPase AAA; ATPase AAA-2 domain protein; SMART: ATPase AAA YP_001992532.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_001992533.1 KEGG: nha:Nham_2418 hypothetical protein YP_001992534.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: bbt:BBta_4777 D-alanyl-D-alanine carboxypeptidase (peptidase S11)(dd-carboxypeptidase) YP_001992535.1 PFAM: heat shock protein DnaJ domain protein; KEGG: bja:bll5157 hypothetical protein YP_001992536.1 KEGG: bja:bll5159 hypothetical protein YP_001992537.1 KEGG: bra:BRADO4552 conserved hypothetical protein; alpha/beta-hydrolases YP_001992538.1 PFAM: ATPase MipZ; KEGG: bja:bll5161 hypothetical protein YP_001992539.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_001992540.1 PFAM: conserved hypothetical protein; KEGG: bja:bll5163 hypothetical protein YP_001992541.1 KEGG: nha:Nham_2426 hypothetical protein YP_001992542.1 KEGG: nha:Nham_2427 hypothetical protein YP_001992543.1 PFAM: glutathione S-transferase domain; KEGG: nha:Nham_2428 glutathione S-transferase-like YP_001992544.1 KEGG: nha:Nham_2430 hypothetical protein YP_001992545.1 PFAM: protein of unknown function DUF218; KEGG: nwi:Nwi_1708 protein of unknown function DUF218 YP_001992546.1 PFAM: aldo/keto reductase; KEGG: bra:BRADO4561 aldo/keto reductase; 2,5-diketo-D-gluconate reductase B (DkgB-like) YP_001992547.1 PFAM: helix-turn-helix domain protein; KEGG: bbt:BBta_4790 transcriptional regulator, XRE family YP_001992548.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: bra:BRADO4563 magnesium transporter MgtE-like (divalent cation transporter Mg2+/Ni2+/Co2+) YP_001992549.1 PFAM: polysaccharide deacetylase; KEGG: nha:Nham_2434 polysaccharide deacetylase YP_001992550.1 PFAM: polysaccharide deacetylase; KEGG: nha:Nham_2435 polysaccharide deacetylase YP_001992551.1 PFAM: conserved hypothetical protein; KEGG: nha:Nham_3790 hypothetical protein YP_001992552.1 PFAM: RES domain protein; KEGG: xau:Xaut_5010 RES domain protein YP_001992553.1 PFAM: surface presentation of antigens (SPOA) protein; KEGG: bja:bsl5256 hypothetical protein YP_001992554.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_001992555.1 KEGG: bja:bll6545 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; GAF domain protein YP_001992556.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: bja:bll5259 hypothetical protein YP_001992557.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_4894 transcriptional regulator, LysR family YP_001992558.1 catalyzes the hydrolysis of acylphosphate YP_001992559.1 KEGG: bja:bll5266 carboxy-phosphonoenolpyruvate mutase YP_001992560.1 PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: bja:bll5267 propionyl-coenzyme A carboxylase alpha polypeptide YP_001992561.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: bja:blr5306 hypothetical protein YP_001992562.1 KEGG: nwi:Nwi_1737 hypothetical protein YP_001992563.1 KEGG: bra:BRADO3234 hypothetical protein YP_001992564.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: bbt:BBta_4932 DNA photolyase class-1 family protein YP_001992565.1 KEGG: bja:blr5311 probable histon H1 YP_001992566.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:bll5313 hypothetical protein YP_001992567.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: ret:RHE_CH03501 phenazine biosynthesis protein YP_001992568.1 KEGG: bja:bll5314 hypothetical protein YP_001992569.1 KEGG: cyb:CYB_2178 hypothetical protein YP_001992570.1 KEGG: nis:NIS_1397 ABC transporter ATP-binding protein YP_001992573.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bra:BRADO6631 methyl-accepting chemotaxis receptor/sensory transducer precursor YP_001992574.1 KEGG: nha:Nham_2176 hypothetical protein YP_001992575.1 KEGG: bja:bll5328 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001992576.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: bbt:BBta_5502 alcohol dehydrogenase YP_001992577.1 PFAM: NUDIX hydrolase; KEGG: bbt:BBta_5001 hypothetical protein YP_001992578.1 PFAM: dihydrodipicolinate synthetase; KEGG: bja:bll5331 hypothetical protein YP_001992579.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll5332 probable short-chain dehydrogenase YP_001992580.1 PFAM: MaoC domain protein dehydratase; KEGG: bja:bll5333 dehydrogenase YP_001992581.1 PFAM: protein of unknown function DUF35; KEGG: bra:BRADO4313 hypothetical protein YP_001992582.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001992583.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_001992584.1 KEGG: bja:blr5341 hypothetical protein YP_001992585.1 KEGG: bja:bsr5347 hypothetical protein YP_001992586.1 PFAM: protein of unknown function DUF1295; KEGG: olu:OSTLU_16639 predicted protein YP_001992587.1 KEGG: mag:amb3985 hypothetical protein YP_001992588.1 PFAM: Protein phosphatase 2C-like; Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: bja:bll2800 probable bifunctional serine/threonine kinase and phosphatase YP_001992589.1 PFAM: formate/nitrite transporter; KEGG: bja:bll2801 probable potential formate transporter YP_001992590.1 PFAM: plasmid maintenance system killer; KEGG: azc:AZC_0872 plasmid maintenance system killer protein YP_001992591.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: azc:AZC_4647 plasmid maintenance system antidote protein YP_001992592.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: mex:Mext_2384 hypothetical protein YP_001992593.1 PFAM: carboxyl transferase; KEGG: bra:BRADO4331 propionyl-CoA carboxylase beta chain YP_001992594.1 KEGG: bbt:BBta_5025 hypothetical protein YP_001992595.1 KEGG: nha:Nham_1578 type III secretion protein YP_001992596.1 KEGG: bbt:BBta_5030 exported protein of unknown function YP_001992597.1 PFAM: ATP12 ATPase; KEGG: bja:bll5364 hypothetical protein YP_001992598.1 KEGG: rrs:RoseRS_2769 FHA domain containing protein YP_001992599.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bra:BRADO4632 ribosomal large subunit pseudouridine synthase RluC-like (23S RNA pseudouridylate synthase) (RNA-uridine isomerase) YP_001992600.1 KEGG: azc:AZC_4195 hypothetical protein YP_001992601.1 PFAM: dienelactone hydrolase; KEGG: mag:amb1216 carboxymethylenebutenolidase YP_001992602.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:bll8142 hypothetical protein YP_001992606.1 PFAM: nitroreductase; KEGG: bbt:BBta_0024 hypothetical protein YP_001992607.1 KEGG: mrd:Mrad2831_4432 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_001992608.1 PFAM: extracellular ligand-binding receptor; KEGG: bja:blr2988 hypothetical protein YP_001992609.1 PFAM: protein of unknown function UPF0047; KEGG: bra:BRADO6457 hypothetical protein YP_001992610.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bbt:BBta_1127 signaling membrane protein containing multidomains GGDEF/EAL YP_001992611.1 PFAM: ATPase AAA; ATPase AAA; SMART: ATPase AAA; KEGG: bja:bll5367 recombination factor protein RarA YP_001992612.1 KEGG: nha:Nham_1572 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001992613.1 PFAM: helix-turn-helix HxlR type; KEGG: bja:bll5370 transcriptional regulatory protein YP_001992614.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr5371 zinc-binding dehydrogenase YP_001992615.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll5373 probable short-chain dehydrogenase YP_001992616.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001992617.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001992618.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001992619.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001992621.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001992622.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001992623.1 late assembly protein YP_001992624.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001992625.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001992626.1 binds 5S rRNA along with protein L5 and L25 YP_001992627.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001992628.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001992629.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_001992630.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001992631.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001992632.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001992633.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_001992634.1 one of the stabilizing components for the large ribosomal subunit YP_001992635.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001992636.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_001992637.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001992638.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001992639.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001992640.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001992641.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001992642.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001992643.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001992644.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001992645.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001992646.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001992647.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001992648.1 KEGG: bja:blr2658 hypothetical protein YP_001992649.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: scl:sce7710 transcriptional regulator, AraC family YP_001992650.1 PFAM: O-methyltransferase family 3; KEGG: scl:sce1113 hypothetical protein YP_001992651.1 PFAM: HNH endonuclease; KEGG: rfr:Rfer_1191 HNH endonuclease YP_001992652.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_0486 LysR substrate-binding YP_001992653.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: mex:Mext_0485 protein of unknown function DUF1228 YP_001992654.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: oan:Oant_3208 heavy metal translocating P-type ATPase YP_001992655.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: nha:Nham_3726 transcriptional regulator, MerR family YP_001992656.1 PFAM: major facilitator superfamily MFS_1; KEGG: smd:Smed_3859 major facilitator superfamily MFS_1 YP_001992657.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: smd:Smed_5280 3-demethylubiquinone-9 3-methyltransferase YP_001992658.1 PFAM: regulatory protein MarR; KEGG: nha:Nham_3666 transcriptional regulator, MarR family YP_001992659.1 PFAM: ABC transporter transmembrane region; ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_5078 ABC transporter ATPase and permease components YP_001992660.1 PFAM: amine oxidase; methyltransferase type 11; KEGG: bbt:BBta_5079 hypothetical protein YP_001992661.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001992662.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001992663.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001992664.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001992665.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bra:BRADO3050 glyoxylate reductase (glycolate reductase) YP_001992666.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001992667.1 binds directly to 23S ribosomal RNA YP_001992668.1 Modulates Rho-dependent transcription termination YP_001992669.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_001992670.1 TIGRFAM: TonB family protein; KEGG: atc:AGR_C_267 TonB protein YP_001992671.1 PFAM: biopolymer transport protein ExbD/TolR; KEGG: atc:AGR_C_265 biopolymer transport ExbD protein YP_001992672.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: oan:Oant_1254 TonB-system energizer ExbB type-1 YP_001992673.1 PFAM: Haem oxygenase-like; KEGG: atc:AGR_C_4545 heme oxygenase YP_001992674.1 TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: plu:plu0739 hypothetical protein YP_001992675.1 PFAM: FecR protein; KEGG: nwi:Nwi_1969 FecR protein YP_001992676.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001992677.1 KEGG: xau:Xaut_3357 hypothetical protein YP_001992678.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001992679.1 PFAM: beta-lactamase; KEGG: bja:blr5441 hypothetical protein YP_001992680.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO3043 short-chain dehydrogenase/reductase SDR YP_001992681.1 PFAM: phosphoglycerate mutase; KEGG: bbt:BBta_5099 phosphoglycerate mutase family protein YP_001992682.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO3041 short-chain dehydrogenase/reductase SDR family protein YP_001992683.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: cak:Caul_4355 transposase IS116/IS110/IS902 family protein YP_001992684.1 PFAM: aminoglycoside phosphotransferase; KEGG: bra:BRADO3036 aminoglycoside phosphotransferase YP_001992685.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bra:BRADO3035 acyl-CoA dehydrogenase YP_001992686.1 PFAM: regulatory protein TetR; KEGG: bja:blr5456 transcriptional regulatory protein YP_001992687.1 KEGG: bbt:BBta_1448 membrane transport protein YP_001992689.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: jan:Jann_1385 ABC transporter YP_001992690.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: jan:Jann_1384 ABC transporter YP_001992691.1 PFAM: inner-membrane translocator; KEGG: sit:TM1040_1513 inner-membrane translocator YP_001992692.1 PFAM: inner-membrane translocator; KEGG: sit:TM1040_1512 inner-membrane translocator YP_001992693.1 KEGG: dsh:Dshi_1404 branched-chain amino acid ABC transporter periplasmic binding protein YP_001992694.1 KEGG: azc:AZC_1612 hypothetical protein YP_001992695.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pla:Plav_0154 AMP-dependent synthetase and ligase YP_001992696.1 PFAM: regulatory protein TetR; Bacterio-opsin activator HTH domain protein; KEGG: sus:Acid_5697 transcriptional regulator, TetR family YP_001992697.1 PFAM: Thiolase; KEGG: mpt:Mpe_A0178 lipid-transfer protein YP_001992698.1 KEGG: pla:Plav_0156 hypothetical protein YP_001992699.1 PFAM: MaoC domain protein dehydratase; KEGG: pla:Plav_0157 MaoC domain protein dehydratase YP_001992700.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pla:Plav_0158 short-chain dehydrogenase/reductase SDR YP_001992701.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xau:Xaut_0903 enoyl-CoA hydratase PaaB YP_001992702.1 KEGG: bbt:BBta_6826 copper-containing nitrite reductase (NO-forming) NirK; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3 YP_001992703.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bbt:BBta_3799 exodeoxyribonuclease III YP_001992704.1 KEGG: cak:Caul_0468 hypothetical protein YP_001992705.1 PFAM: protein of unknown function DUF892; KEGG: bja:bll7648 hypothetical protein YP_001992706.1 KEGG: bra:BRADO3437 hypothetical protein YP_001992707.1 PFAM: catalase domain protein; KEGG: sme:SMb20007 probable catalase C protein YP_001992708.1 KEGG: gbe:GbCGDNIH1_0916 isoamylase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001992709.1 PFAM: transglutaminase domain protein; KEGG: mrd:Mrad2831_2448 transglutaminase domain protein YP_001992710.1 KEGG: bbt:BBta_4265 hypothetical protein YP_001992711.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mex:Mext_4798 2-alkenal reductase YP_001992712.1 PFAM: peptidase M50; KEGG: bja:bll3910 hypothetical protein YP_001992714.1 PFAM: CheB methylesterase; MCP methyltransferase CheR-type; HWE histidine kinase; PAS fold-4 domain protein; KEGG: nha:Nham_4605 MCP methyltransferase, CheR-type YP_001992715.1 KEGG: mrd:Mrad2831_5711 hypothetical protein YP_001992716.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mes:Meso_1485 cyclic nucleotide-binding protein YP_001992717.1 KEGG: bbt:BBta_1078 hypothetical protein YP_001992718.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: bra:BRADO0757 phosphomannomutase/phosphoglucomutase (PMM / PGM) YP_001992719.1 KEGG: nwi:Nwi_1075 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; nucleotidyl transferase; cupin YP_001992720.1 KEGG: tcr:507895.124 hypothetical protein PROSITE: ALA_RICH ARG_RICH GLU_RICH NLS_BP YP_001992721.1 KEGG: ava:Ava_4835 hypothetical protein YP_001992722.1 KEGG: bvi:Bcep1808_6712 hypothetical protein YP_001992723.1 SMART: helix-turn-helix domain protein; KEGG: mmw:Mmwyl1_4217 helix-turn-helix domain protein YP_001992724.1 PFAM: Curlin associated repeat protein; KEGG: mul:MUL_3169 PPE family protein YP_001992725.1 KEGG: rsq:Rsph17025_3601 hypothetical protein YP_001992726.1 KEGG: gbe:GbCGDNIH1_1408 hemagglutinin-related protein YP_001992727.1 KEGG: pen:PSEEN2838 curli production assembly/transport component CsgF precursor YP_001992728.1 PFAM: Curli production assembly/transport component CsgG; KEGG: bur:Bcep18194_B2588 curli production assembly/transport component CsgG YP_001992729.1 KEGG: dre:570672 similar to synapsin Ia YP_001992730.1 KEGG: psa:PST_2861 PPE-repeat protein YP_001992732.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: mrd:Mrad2831_0013 4'-phosphopantetheinyl transferase YP_001992733.1 PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: nfa:nfa7580 hypothetical protein YP_001992734.1 PFAM: condensation domain protein; KEGG: mes:Meso_2581 condensation domain YP_001992735.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; beta-ketoacyl synthase ; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain YP_001992736.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: mxa:MXAN_4601 non-ribosomal peptide synthase YP_001992737.1 PFAM: acyltransferase 3; KEGG: rle:RL3831 O-acetyl transferase YP_001992738.1 KEGG: bbt:BBta_1040 hypothetical protein YP_001992739.1 PFAM: glycosyl transferase group 1; KEGG: bbt:BBta_1074 glycosyl transferase, group 1 YP_001992740.1 PFAM: FAD dependent oxidoreductase; GMC oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mes:Meso_2585 glucose-methanol-choline oxidoreductase YP_001992741.1 KEGG: bbt:BBta_1039 membrane protein of unknown function YP_001992742.1 PFAM: glycosyl transferase group 1; KEGG: bbt:BBta_1042 glycosyl transferase group 1 YP_001992743.1 KEGG: mrd:Mrad2831_4549 glycosyl transferase group 1 YP_001992744.1 PFAM: polysaccharide biosynthesis protein; KEGG: bbt:BBta_1044 membrane protein of unknown function with polysaccharide biosynthesis protein domain YP_001992745.1 PFAM: acyltransferase 3; KEGG: xau:Xaut_1956 acyltransferase 3 YP_001992746.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mes:Meso_2584 DegT/DnrJ/EryC1/StrS aminotransferase YP_001992747.1 PFAM: glycosyl transferase family 25; KEGG: mpt:Mpe_A0728 glycosyltransferase involved in LPS biosynthesis-like protein YP_001992748.1 PFAM: glycosyl transferase group 1; KEGG: bbt:BBta_1037 glycosyltransferase group 1 family protein YP_001992749.1 PFAM: metallophosphoesterase; KEGG: bbt:BBta_1036 serine/threonine protein phosphatase YP_001992750.1 KEGG: bbt:BBta_1035 exported protein of unknown function YP_001992751.1 KEGG: bbt:BBta_1034 tyrosine-protein kinase injvolved in exopolysaccharide polymerization; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein YP_001992752.1 KEGG: bbt:BBta_1033 exported protein of unknown function YP_001992753.1 PFAM: sugar transferase; KEGG: atc:AGR_L_2989 hypothetical protein YP_001992754.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: bbt:BBta_1030 exported protein of unknown function YP_001992755.1 PFAM: O-antigen polymerase; KEGG: bbt:BBta_1029 O-antigen polymerase, membrane protein YP_001992756.1 PFAM: polysaccharide export protein; KEGG: bbt:BBta_1028 capsule polysaccharide export outer membrane protein YP_001992757.1 KEGG: bra:BRADO4758 conserved hypothetical protein, membrane protein YP_001992758.1 KEGG: bbt:BBta_1063 exported protein of unknown function YP_001992760.1 KEGG: mrd:Mrad2831_2505 hypothetical protein YP_001992767.1 PFAM: VRR-NUC domain protein; KEGG: ppu:PP_1554 hypothetical protein YP_001992768.1 PFAM: metallophosphoesterase; KEGG: pnu:Pnuc_0863 metallophosphoesterase YP_001992774.1 KEGG: afm:AFUA_6G04940 cytokinesis protein SepA/Bni1 YP_001992776.1 PFAM: type III restriction protein res subunit; KEGG: btr:Btr_1179 hypothetical protein YP_001992777.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: btr:Btr_1180 methyltransferase YP_001992778.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ecw:EcE24377A_3320 helicase, SNF2 family YP_001992779.1 KEGG: bur:Bcep18194_B3081 transcriptional regulator, LysR family YP_001992780.1 KEGG: bbt:BBta_3430 hypothetical protein YP_001992781.1 KEGG: bbt:BBta_3319 hypothetical protein YP_001992782.1 PFAM: protein of unknown function DUF159; KEGG: bbt:BBta_3432 hypothetical protein YP_001992783.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: bra:BRADO1464 DNA polymerase IV YP_001992787.1 PFAM: ATPase AAA; ATPase AAA; SMART: ATPase AAA; KEGG: nha:Nham_1979 ATPase AAA, central region YP_001992788.1 KEGG: nha:Nham_1977 hypothetical protein YP_001992790.1 PFAM: alpha/beta hydrolase fold; KEGG: nfa:nfa54420 hydrolase YP_001992791.1 PFAM: integrase family protein; KEGG: bps:BPSL0587 phage integrase family protein YP_001992792.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: syn:sll1169 hypothetical protein YP_001992793.1 PFAM: HWE histidine kinase; KEGG: bra:BRADO2814 conserved hypothetical protein; sensor histidine kinase (HWE family) YP_001992794.1 KEGG: rsp:RSP_3992 hypothetical protein YP_001992795.1 PFAM: protein of unknown function DUF1328; KEGG: rle:RL4195 transmembrane protein YP_001992796.1 KEGG: ana:alr5319 hypothetical protein YP_001992797.1 PFAM: sodium/hydrogen exchanger; KEGG: mrd:Mrad2831_6040 sodium/hydrogen exchanger YP_001992798.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mlo:mll4860 hypothetical protein YP_001992799.1 TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: xcc:XCC1575 glucose dehydrogenase YP_001992800.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: jan:Jann_1385 ABC transporter YP_001992801.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: jan:Jann_1384 ABC transporter YP_001992802.1 PFAM: inner-membrane translocator; KEGG: sit:TM1040_1513 inner-membrane translocator YP_001992803.1 PFAM: inner-membrane translocator; KEGG: sit:TM1040_1512 inner-membrane translocator YP_001992804.1 KEGG: dsh:Dshi_1404 branched-chain amino acid ABC transporter periplasmic binding protein YP_001992805.1 PFAM: PRC-barrel domain protein; KEGG: atc:AGR_C_3639 hypothetical protein YP_001992806.1 PFAM: protein of unknown function UPF0118; KEGG: gbe:GbCGDNIH1_0302 hypothetical membrane spanning protein YP_001992807.1 PFAM: ribonuclease BN; KEGG: mrd:Mrad2831_1360 ribonuclease BN YP_001992808.1 PFAM: peptidoglycan-binding LysM; KEGG: sen:SACE_2783 aldehyde dehydrogenase (NAD+) YP_001992810.1 PFAM: glycosyl transferase family 20; KEGG: ppd:Ppro_3271 alpha,alpha-trehalose-phosphate synthase (UDP-forming) YP_001992811.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll7188 probable ATP-binding protein YP_001992812.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mms:mma_1860 oxidoreductase, short chain dehydrogenase/reductase family YP_001992813.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: azc:AZC_1361 high similarity to two-component response regulator YP_001992814.1 KEGG: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001992815.1 KEGG: cytochrome P460 YP_001992816.1 PFAM: alpha/beta hydrolase fold; KEGG: mrd:Mrad2831_4572 alpha/beta hydrolase fold YP_001992817.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: nha:Nham_2508 RNA methyltransferase TrmH, group 3 YP_001992818.1 KEGG: nha:Nham_2509 hypothetical protein YP_001992819.1 KEGG: nha:Nham_2510 hypothetical protein YP_001992821.1 PFAM: BLUF domain protein; KEGG: mrd:Mrad2831_4411 BLUF domain protein YP_001992822.1 KEGG: bja:bll4036 hypothetical protein YP_001992826.1 PFAM: OmpA domain protein transmembrane region-containing protein; porin; KEGG: nha:Nham_1666 OmpA-like transmembrane region YP_001992827.1 KEGG: nha:Nham_1665 hypothetical protein YP_001992828.1 KEGG: dme:Dmel_CG13953 CG13953 YP_001992829.1 catalyzes the phosphorylation of NAD to NADP YP_001992830.1 KEGG: sil:SPO1926 hypothetical protein YP_001992831.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN3288 oxidoreductase, short-chain dehydrogenase/reductase family YP_001992834.1 PFAM: response regulator receiver; KEGG: bja:blr5517 two-component response regulator YP_001992835.1 PFAM: Hpt domain protein; KEGG: bja:blr5518 hypothetical protein YP_001992836.1 KEGG: nha:Nham_1660 hypothetical protein YP_001992837.1 PFAM: ABC transporter inner membrane protein; KEGG: pnu:Pnuc_1186 ABC transporter inner membrane protein YP_001992838.1 KEGG: pnu:Pnuc_1185 ABC transporter substrate-binding protein YP_001992839.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_0835 ABC transporter YP_001992840.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: azc:AZC_3883 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001992841.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_1158 LysR substrate-binding YP_001992842.1 KEGG: bja:bll5520 hypothetical protein YP_001992843.1 KEGG: dvl:Dvul_1284 hypothetical protein YP_001992844.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_001992845.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_001992846.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: bra:BRADO2983 conserved hypothetical protein; NifU-like N-ter domain YP_001992847.1 KEGG: nha:Nham_1655 hypothetical protein YP_001992848.1 PFAM: protein of unknown function DUF37; KEGG: nha:Nham_1654 hypothetical protein YP_001992849.1 KEGG: bra:BRADO3451 conserved hypothetical protein; signal peptide YP_001992850.1 PFAM: arsenic pump membrane protein; Citrate transporter; KEGG: bra:BRADO3240 arsenite permease YP_001992851.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: nha:Nham_2750 cold-shock DNA-binding domain protein YP_001992852.1 KEGG: bra:BRADO0632 hypothetical protein YP_001992854.1 KEGG: cak:Caul_4714 hypothetical protein YP_001992855.1 PFAM: regulatory protein TetR; KEGG: bja:blr4230 transcriptional regulatory protein YP_001992856.1 PFAM: O-methyltransferase family 3; KEGG: bte:BTH_II0913 O-methyltransferase YP_001992858.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll5536 major facilitator superfamily transporter YP_001992859.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001992860.1 KEGG: cak:Caul_2536 hypothetical protein YP_001992861.1 PFAM: nitroreductase; KEGG: bja:blr5540 hypothetical protein YP_001992862.1 PFAM: Amidohydrolase 3; KEGG: sit:TM1040_2000 twin-arginine translocation pathway signal YP_001992863.1 KEGG: bja:bll5542 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_001992864.1 KEGG: nha:Nham_1651 hypothetical protein YP_001992865.1 PFAM: Patatin; KEGG: nha:Nham_1650 patatin YP_001992866.1 KEGG: bbt:BBta_7044 membrane protein of unknown function YP_001992867.1 PFAM: PepSY-associated TM helix domain protein; KEGG: bbt:BBta_7043 uncharacterized iron-regulated membrane protein YP_001992868.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbt:BBta_7042 hydroxamate-type ferrisiderophore receptor YP_001992869.1 PFAM: regulatory protein TetR; KEGG: bbt:BBta_7041 transcriptional regulator, TetR family YP_001992870.1 PFAM: CBS domain containing protein; KEGG: bja:bll5551 hypothetical protein YP_001992871.1 PFAM: rhomboid family protein; KEGG: nha:Nham_1648 rhomboid-like protein YP_001992872.1 PFAM: protein of unknown function DUF1457; KEGG: nha:Nham_1646 hypothetical protein YP_001992873.1 KEGG: bja:blr0395 hypothetical protein YP_001992874.1 PFAM: type IV pilus assembly PilZ; KEGG: bja:blr5568 hypothetical protein YP_001992875.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: bbt:BBta_5218 exported protein of unknown function YP_001992879.1 KEGG: rru:Rru_A2638 hypothetical protein YP_001992881.1 PFAM: regulatory protein MarR; KEGG: bja:blr4984 transcriptional regulatory protein YP_001992882.1 PFAM: porin; KEGG: bbt:BBta_3063 exported protein of unknown function with porin precursor domain YP_001992883.1 KEGG: bra:BRADO2945 hypothetical protein YP_001992884.1 KEGG: bbt:BBta_5226 hypothetical protein YP_001992885.1 KEGG: nha:Nham_2576 hypothetical protein YP_001992886.1 KEGG: bra:BRADO2942 conserved hypothetical protein; exported protein YP_001992887.1 KEGG: nha:Nham_2578 hypothetical protein YP_001992888.1 KEGG: bja:bll5586 serine acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein YP_001992889.1 PFAM: alpha/beta hydrolase fold; KEGG: bra:BRADO2938 hydrolase YP_001992890.1 KEGG: bbt:BBta_5235 exported protein of unknown function YP_001992891.1 KEGG: bja:bsr5590 hypothetical protein YP_001992892.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bja:blr5591 salicylate hydroxylase YP_001992893.1 KEGG: bra:BRADO2934 conserved hypothetical protein; signal peptide YP_001992894.1 PFAM: UspA domain protein; KEGG: bpt:Bpet2477 universal stress family protein YP_001992895.1 PFAM: protein of unknown function DUF23; KEGG: nha:Nham_1056 protein of unknown function DUF23 YP_001992896.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: hha:Hhal_0413 DNA mismatch endonuclease vsr YP_001992897.1 PFAM: protein of unknown function DUF87; KEGG: tpe:Tpen_1572 protein of unknown function DUF87 YP_001992898.1 KEGG: ret:RHE_PF00109 hypothetical protein YP_001992899.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: ret:RHE_PF00108 probable DNA (cytosine-5-)-methyltransferase protein YP_001992900.1 KEGG: bbt:BBta_5260 amidohydrolase family protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001992901.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001992902.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001992903.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bra:BRADO5498 fumarylacetoacetate hydrolase family protein YP_001992904.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bbt:BBta_5982 transcriptional regulatory protein, GntR family YP_001992905.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr3958 acetyl-coenzyme A synthetase YP_001992906.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bbt:BBta_3581 3-hydroxyisobutyrate dehydrogenase YP_001992907.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA YP_001992908.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: nha:Nham_2558 acyl-CoA dehydrogenase-like YP_001992909.1 KEGG: xau:Xaut_2191 PilT protein domain protein YP_001992910.1 KEGG: xau:Xaut_2192 hypothetical protein YP_001992911.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bra:BRADO3137 methylmalonate-semialdehyde dehydrogenase YP_001992912.1 PFAM: regulatory protein TetR; KEGG: bra:BRADO3136 transcriptional regulator, TetR family YP_001992913.1 PFAM: thioesterase superfamily protein; KEGG: bja:blr3951 hypothetical protein YP_001992914.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001992915.1 PFAM: major facilitator superfamily MFS_1; KEGG: bra:BRADO3133 transmembrane transport protein of the MFS family, monocarboxylate permease YP_001992916.1 PFAM: carboxyl transferase; KEGG: bja:blr3940 propionyl-CoA carboxylase beta chain YP_001992917.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bbt:BBta_3572 transcriptional regulatory protein, IclR family YP_001992918.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: bja:bsl3938 biotinylated protein YP_001992919.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bja:bll3937 hypothetical protein YP_001992920.1 TIGRFAM: TRAP transporter 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:bll3936 hypothetical protein YP_001992921.1 KEGG: nmu:Nmul_A1418 hypothetical protein YP_001992922.1 KEGG: bja:blr3928 hypothetical protein YP_001992923.1 KEGG: bbt:BBta_3567 thiolase YP_001992924.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbt:BBta_3565 formyl-CoA transferase YP_001992925.1 KEGG: sco:SCO4500 dehydratase YP_001992926.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dsh:Dshi_0700 AMP-dependent synthetase and ligase YP_001992927.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001992928.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bra:BRADO3109 UDP-glucose 4-epimerase YP_001992929.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_3556 ABC transporter permease protein YP_001992930.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_3555 ABC transporter permease protein YP_001992931.1 PFAM: extracellular solute-binding protein family 1; KEGG: bra:BRADO3106 ABC transporter periplasmic-binding protein YP_001992932.1 PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: bra:BRADO3105 ABC transporter ATP-binding protein YP_001992933.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_001992934.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO3102 3-oxoacyl-[acyl-carrier-protein] reductase YP_001992935.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_3549 3-oxoacyl-acyl carrier protein reductase YP_001992936.1 TIGRFAM: TonB family protein; KEGG: nha:Nham_1517 TonB-like YP_001992937.1 TIGRFAM: TonB system transport protein ExbD; PFAM: biopolymer transport protein ExbD/TolR; KEGG: nha:Nham_1516 biopolymer transport protein ExbD/TolR YP_001992938.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: bja:blr3906 biopolymer transport protein YP_001992939.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: bja:blr3905 hydroxylase YP_001992940.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_1513 TonB-dependent receptor YP_001992941.1 KEGG: bbt:BBta_3539 hypothetical protein YP_001992942.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: nha:Nham_1510 secretion protein HlyD YP_001992943.1 PFAM: acriflavin resistance protein; KEGG: nha:Nham_1509 acriflavin resistance protein YP_001992944.1 PFAM: PilT protein domain protein; KEGG: rso:RSc3055 hypothetical protein YP_001992945.1 PFAM: SpoVT/AbrB domain protein; KEGG: nmu:Nmul_A0985 transcriptional regulator/antitoxin, MazE YP_001992946.1 TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: nha:Nham_2492 phage portal protein, HK97 YP_001992947.1 KEGG: rso:RSc1696 probable phage HK022 GP20-related protein YP_001992948.1 KEGG: nha:Nham_2491 hypothetical protein YP_001992950.1 TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: nha:Nham_2490 peptidase U35, phage prohead HK97 YP_001992951.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: rsp:RSP_2358 possible phage phi-C31 GP36-like protein / major capsid protein, HK97 family YP_001992952.1 KEGG: nha:Nham_2487 hypothetical protein YP_001992953.1 PFAM: HNH endonuclease; KEGG: nwi:Nwi_1480 HNH endonuclease YP_001992954.1 KEGG: nha:Nham_2485 hypothetical protein YP_001992955.1 TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: nha:Nham_2484 uncharacterized phage protein YP_001992956.1 KEGG: nha:Nham_2483 hypothetical protein YP_001992957.1 TIGRFAM: phage head-tail adaptor; KEGG: nha:Nham_2482 hypothetical protein YP_001992959.1 TIGRFAM: phage terminase, small subunit, , P27 family; PFAM: terminase small subunit P27; KEGG: nwi:Nwi_1617 phage terminase, small subunit, , P27 YP_001992960.1 PFAM: Terminase; KEGG: nha:Nham_1726 phage terminase YP_001992961.1 TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: nha:Nham_2479 phage protein, HK97, GP10 YP_001992962.1 KEGG: nha:Nham_2478 hypothetical protein YP_001992963.1 KEGG: nha:Nham_2477 hypothetical protein YP_001992964.1 KEGG: nha:Nham_2138 hypothetical protein YP_001992967.1 KEGG: cdi:DIP0856 serine protease YP_001992968.1 PFAM: integrase family protein; KEGG: nha:Nham_2130 phage integrase YP_001992970.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_3863 formyl-CoA transferase YP_001992971.1 PFAM: extracellular ligand-binding receptor; KEGG: bja:blr7827 ABC transporter substrate-binding protein YP_001992972.1 PFAM: protein of unknown function DUF548; KEGG: oan:Oant_1046 protein of unknown function DUF548 YP_001992973.1 KEGG: nha:Nham_2725 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001992974.1 KEGG: bja:bsl6507 hypothetical protein YP_001992975.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: nwi:Nwi_2348 HflC YP_001992976.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: nwi:Nwi_2349 HflK YP_001992977.1 PFAM: dihydrofolate reductase region; KEGG: bbt:BBta_6098 dihydrofolate reductase YP_001992978.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_001992979.1 PFAM: conserved hypothetical protein; KEGG: bja:bll6513 hypothetical protein YP_001992980.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: bja:bll6514 hypothetical protein YP_001992981.1 PFAM: protein of unknown function DUF1468; KEGG: bra:BRADO5580 hypothetical protein YP_001992982.1 PFAM: Chromate transporter; KEGG: bja:bll6516 transmembrane protein YP_001992983.1 PFAM: Chromate transporter; KEGG: bra:BRADO5582 chromate transport protein (ChrA-like) YP_001992984.1 PFAM: protein of unknown function DUF1321; KEGG: bbt:BBta_6105 hypothetical protein YP_001992985.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_001992986.1 KEGG: bbt:BBta_6107 hypothetical protein YP_001992987.1 KEGG: nha:Nham_2734 hypothetical protein YP_001992988.1 PFAM: AsmA family protein; KEGG: bja:bll6536 hypothetical protein YP_001992989.1 PFAM: FAD linked oxidase domain protein; KEGG: bja:bll6558 oxidoreductase YP_001992990.1 KEGG: bra:BRADO5610 conserved hypothetical protein; thioesterase superfamily YP_001992991.1 PFAM: protein of unknown function DUF1328; KEGG: bbt:BBta_6140 membrane protein of unknown function YP_001992992.1 PFAM: UvrD/REP helicase; KEGG: nha:Nham_2739 UvrD/REP helicase YP_001992993.1 PFAM: protein of unknown function UPF0150; KEGG: nha:Nham_0567 protein of unknown function UPF0150 YP_001992994.1 PFAM: protein of unknown function UPF0150; KEGG: ccr:CC_3185 DNA-binding protein, CopG family YP_001992995.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2740 ABC transporter YP_001992996.1 PFAM: ABC transporter; KEGG: bja:blr6578 ABC transporter permease protein YP_001992997.1 KEGG: nwi:Nwi_2363 hypothetical protein YP_001992998.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: nha:Nham_2743 ErfK/YbiS/YcfS/YnhG YP_001992999.1 KEGG: bra:BRADO5641 hypothetical protein YP_001993000.1 PFAM: FAD dependent oxidoreductase; KEGG: nha:Nham_2744 FAD dependent oxidoreductase YP_001993002.1 PFAM: RNA methylase; methyltransferase small; ribosomal L11 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: bja:blr6588 ribosomal protein L11 methyltransferase YP_001993004.1 PFAM: creatinase; peptidase M24; KEGG: bbt:BBta_6160 aminopeptidase P YP_001993005.1 TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr6590 major facilitator superfamily transporter YP_001993006.1 KEGG: nha:Nham_1290 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase YP_001993007.1 KEGG: bja:bsr6592 hypothetical protein YP_001993008.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: nha:Nham_1289 DNA repair protein RecN YP_001993009.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: bbt:BBta_6164 hypothetical protein YP_001993010.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_001993011.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_001993012.1 PFAM: cell division protein FtsA; KEGG: bra:BRADO5654 cell division protein with ATPase domain, involved in recruitment of FtsK to Z ring YP_001993013.1 PFAM: cell division protein FtsQ; polypeptide-transport-associated domain protein FtsQ-type; KEGG: bra:BRADO5655 cell division protein FtsQ YP_001993014.1 PFAM: protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; KEGG: nwi:Nwi_1055 D-alanine--D-alanine ligase YP_001993015.1 KEGG: nha:Nham_2630 hypothetical protein YP_001993016.1 KEGG: mex:Mext_0655 hypothetical protein YP_001993017.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_001993018.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001993019.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_001993020.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: bja:bll6603 cell division protein YP_001993021.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_001993022.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001993023.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: nha:Nham_1275 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase YP_001993024.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_001993025.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: nha:Nham_1273 peptidoglycan glycosyltransferase YP_001993026.1 KEGG: nwi:Nwi_1044 hypothetical protein YP_001993027.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: bbt:BBta_6182 S-adenosyl-dependent methyl transferase YP_001993028.1 PFAM: peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: bja:blr6611 amidase YP_001993029.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: pla:Plav_0312 filamentation induced by cAMP protein Fic YP_001993031.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_6187 multidrug resistance protein B YP_001993032.1 PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_6188 multidrug resistance protein A YP_001993033.1 PFAM: regulatory protein TetR; KEGG: bja:blr6623 transcriptional regulatory protein YP_001993034.1 PFAM: Extensin family protein; KEGG: bja:bll6625 hypothetical protein YP_001993035.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bra:BRADO0729 methyl-accepting chemotaxis protein (chemoreceptor) YP_001993037.1 TIGRFAM: polymorphic outer membrane protein; outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: nha:Nham_3087 outer membrane autotransporter barrel YP_001993038.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:bll0962 phosphoglycolate phosphatase YP_001993039.1 PFAM: cobalamin B12-binding domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dol:Dole_1742 radical SAM domain protein YP_001993040.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dge:Dgeo_0818 short chain dehydrogenase YP_001993041.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xau:Xaut_1138 short-chain dehydrogenase/reductase SDR YP_001993042.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: mes:Meso_0323 bile acid:sodium symporter YP_001993043.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: oan:Oant_3199 arsenate reductase YP_001993044.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: xau:Xaut_0875 protein tyrosine phosphatase YP_001993045.1 PFAM: regulatory protein ArsR; KEGG: bja:bll3087 transcriptional regulatory protein YP_001993046.1 KEGG: xau:Xaut_3943 thiol-disulfide isomerase and thioredoxin YP_001993047.1 PFAM: permease; KEGG: xau:Xaut_3419 permease YP_001993048.1 PFAM: regulatory protein ArsR; KEGG: xau:Xaut_3418 regulatory protein ArsR YP_001993049.1 PFAM: protein of unknown function DUF81; KEGG: xau:Xaut_3951 protein of unknown function DUF81 YP_001993050.1 PFAM: regulatory protein MarR; regulatory protein ArsR; KEGG: sus:Acid_4411 transcriptional regulator, ArsR family YP_001993051.1 in Rhodopseudomonas palustris this protein confers resistance to arsenite; catalyzes the formation of a number of methylated intermediates from arsenite and SAM producing trimethylarsine YP_001993052.1 KEGG: bbt:BBta_2412 hypothetical protein YP_001993053.1 KEGG: nha:Nham_3319 hypothetical protein YP_001993054.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan YP_001993055.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr6636 ATP synthase subunit YP_001993057.1 KEGG: nha:Nham_2886 hypothetical protein YP_001993058.1 PFAM: PRC-barrel domain protein; KEGG: bbt:BBta_6218 exported protein of unknown function YP_001993059.1 KEGG: bja:bll6650 hypothetical protein YP_001993060.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bbt:BBta_6216 two component response transcriptional regulator (OmpR family) YP_001993061.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bja:blr6652 two-component hybrid sensor and regulator YP_001993062.1 KEGG: bra:BRADO5707 hypothetical protein YP_001993063.1 PFAM: FAD dependent oxidoreductase; KEGG: bja:blr6655 thiamine biosynthesis oxidoreductase YP_001993064.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: bbt:BBta_6223 thiamine biosynthesis protein ThiS YP_001993065.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_001993066.1 PFAM: thiamine monophosphate synthase; KEGG: nwi:Nwi_2467 thiamine monophosphate synthase YP_001993067.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_001993068.1 KEGG: nha:Nham_2360 hypothetical protein YP_001993069.1 KEGG: rle:pRL110097 hypothetical protein YP_001993070.1 PFAM: protein of unknown function DUF1486; KEGG: bxe:Bxe_B0561 hypothetical protein YP_001993071.1 KEGG: rba:RB3982 hypothetical protein YP_001993072.1 KEGG: ecs:ECs4262 hypothetical protein YP_001993073.1 PFAM: Protein of unknown function DUF1778; KEGG: acr:Acry_0280 uncharacterized protein-like protein YP_001993075.1 KEGG: afw:Anae109_4320 hypothetical protein YP_001993076.1 KEGG: azc:AZC_4607 hypothetical protein YP_001993079.1 PFAM: monooxygenase FAD-binding; KEGG: bbt:BBta_7587 hypothetical protein YP_001993081.1 KEGG: nha:Nham_2898 hypothetical protein YP_001993082.1 PFAM: Endoribonuclease L-PSP; KEGG: bja:blr6667 hypothetical protein YP_001993083.1 KEGG: bbt:BBta_4169 hypothetical protein YP_001993084.1 PFAM: Collagen triple helix repeat; KEGG: bbt:BBta_6234 collagen-like protein YP_001993085.1 KEGG: bra:BRADO5723 hypothetical protein YP_001993086.1 PFAM: SOUL heme-binding protein; KEGG: mrd:Mrad2831_4266 SOUL heme-binding protein YP_001993087.1 PFAM: protein of unknown function DUF1501; KEGG: mrd:Mrad2831_5538 protein of unknown function DUF1501 YP_001993088.1 PFAM: Protein of unknown function DUF1800; KEGG: azc:AZC_3730 hypothetical protein YP_001993089.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_2901 methyl-accepting chemotaxis receptor/sensory transducer precursor (chemoreceptor) YP_001993091.1 TIGRFAM: bacterioferritin; PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: xau:Xaut_3765 bacterioferritin YP_001993092.1 KEGG: nwi:Nwi_2476 bacterioferritin YP_001993093.1 KEGG: bja:blr6682 hypothetical protein YP_001993094.1 KEGG: nha:Nham_2906 hypothetical protein YP_001993095.1 TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: bja:bll6684 transglycosylase YP_001993096.1 PFAM: conserved hypothetical protein; KEGG: bbt:BBta_6250 hypothetical protein YP_001993097.1 catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate YP_001993098.1 PFAM: protein of unknown function DUF497; KEGG: nwi:Nwi_2483 protein of unknown function DUF497 YP_001993099.1 KEGG: nwi:Nwi_2484 hypothetical protein YP_001993100.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_001993101.1 KEGG: bja:bsr6686 hypothetical protein YP_001993102.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:bll6688 hypothetical protein YP_001993103.1 KEGG: lma:LmjF35.0290 hypothetical protein, conserved YP_001993104.1 PFAM: rhodanese domain protein; KEGG: nha:Nham_2916 3-mercaptopyruvate sulfurtransferase YP_001993105.1 SMART: rhodanese domain protein; KEGG: bja:bll6691 hypothetical protein YP_001993106.1 KEGG: bra:BRADO5746 hypothetical protein YP_001993107.1 KEGG: bja:bll1362 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001993108.1 PFAM: Transglycosylase-associated protein; KEGG: nha:Nham_2918 transglycosylase-associated protein YP_001993109.1 PFAM: ATPase AAA; SMART: ATPase AAA; KEGG: bbt:BBta_6260 ATPase, AAA family YP_001993110.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bra:BRADO1867 vanillate O-demethylase oxygenase, iron-sulfur subunit (modular protein=subunit from monooxygenase) (VanA-like) YP_001993111.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bja:blr2391 transcriptional regulatory protein YP_001993112.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: bja:blr2392 dioxygenase subunit YP_001993114.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_2919 GCN5-related N-acetyltransferase YP_001993115.1 PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: bra:BRADO5762 gluconolactonase YP_001993116.1 KEGG: bbt:BBta_6276 exported protein of unknown function YP_001993117.1 PFAM: excinuclease ABC subunit C; KEGG: pub:SAR11_1011 excinuclease ABC YP_001993118.1 KEGG: bra:BRADO5787 hypothetical protein YP_001993119.1 PFAM: glutathione peroxidase; KEGG: bra:BRADO5788 glutathione peroxidase YP_001993120.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001993121.1 KEGG: nha:Nham_3268 hypothetical protein YP_001993122.1 KEGG: bbt:BBta_6305 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold YP_001993123.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_4730 short-chain dehydrogenases/reductases (SDR) family protein YP_001993124.1 PFAM: helix-turn-helix HxlR type; KEGG: bja:blr5109 transcriptional regulatory protein YP_001993125.1 KEGG: bja:blr6741 hypothetical protein YP_001993126.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; catalyzes isomerization of glucose 6-phosphate and fructose 6-phosphate YP_001993127.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_001993128.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_001993129.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: bja:blr6761 6-phosphogluconolactonase YP_001993130.1 KEGG: bbt:BBta_6318 6-phosphogluconolactonase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase YP_001993131.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: bja:blr6763 hypothetical protein YP_001993132.1 PFAM: glycoside hydrolase 15-related; KEGG: bja:bll6764 hypothetical protein YP_001993133.1 KEGG: bbt:BBta_6321 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77 YP_001993134.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: nha:Nham_1466 alpha amylase, catalytic region YP_001993135.1 KEGG: bja:blr6767 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001993136.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_001993137.1 KEGG: bbt:BBta_6324 glycosyl hydrolase (glycogen debranching enzyme); TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001993138.1 KEGG: bra:BRADO5819 maltooligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001993139.1 KEGG: bra:BRADO5820 glycosyl hydrolase (glycosidase); TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001993140.1 KEGG: bbt:BBta_6327 hypothetical protein YP_001993141.1 KEGG: nha:Nham_2869 hypothetical protein YP_001993142.1 catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_001993143.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: bja:blr6774 hypothetical protein YP_001993144.1 KEGG: bra:BRADO5825 hypothetical protein YP_001993145.1 PFAM: SirA family protein; KEGG: nha:Nham_3129 SirA-like YP_001993146.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_001993147.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr2780 probable NAD-dependent alcohol dehydrogenase YP_001993148.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: bja:blr1330 hypothetical protein YP_001993149.1 activates fatty acids by binding to coenzyme A YP_001993150.1 PFAM: urease accessory protein UreF; KEGG: bja:blr1459 urease accessory protein YP_001993151.1 PFAM: UreE urease accessory domain protein; KEGG: bra:BRADO1043 urease accessory protein UreE YP_001993152.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bja:bsr1458 hypothetical protein YP_001993153.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_001993154.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: mex:Mext_3018 metal-dependent phosphohydrolase HD sub domain YP_001993155.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active YP_001993156.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_001993157.1 PFAM: urease accessory protein UreD; KEGG: bja:blr1453 urease accessory protein YP_001993158.1 KEGG: bbt:BBta_7014 branched-chain amino acid ABC transporter (ATP-binding protein); TIGRFAM: urea ABC transporter ATP-binding protein UrtE; PFAM: ABC transporter; SMART: ATPase AAA YP_001993159.1 KEGG: bja:blr1451 ABC transporter ATP-binding protein; TIGRFAM: urea ABC transporter ATP-binding protein UrtD; PFAM: ABC transporter; SMART: ATPase AAA YP_001993160.1 TIGRFAM: urea ABC transporter permease protein UrtC; PFAM: inner-membrane translocator; KEGG: bra:BRADO1033 branched-chain amino acid ABC transporter (permease protein) YP_001993161.1 TIGRFAM: urea ABC transporter permease protein UrtB; PFAM: inner-membrane translocator; KEGG: bja:blr1449 ABC transporter permease protein YP_001993162.1 TIGRFAM: urea ABC transporter urea binding protein; KEGG: bra:BRADO1031 branched-chain amino acid ABC transporter (substrate-binding protein) YP_001993163.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: nha:Nham_0400 DEAD/DEAH box helicase-like YP_001993164.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001993165.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bbt:BBta_7022 cold shock protein, DNA binding YP_001993166.1 PFAM: TadE family protein; KEGG: bbt:BBta_7023 hypothetical protein YP_001993167.1 PFAM: TadE family protein; KEGG: bbt:BBta_7024 exported protein of unknown function YP_001993168.1 PFAM: Flp/Fap pilin component; KEGG: bbt:BBta_7028 Flp/Fap pilin component YP_001993169.1 PFAM: peptidase A24A prepilin type IV; KEGG: nwi:Nwi_0303 peptidase A24A, prepilin type IV YP_001993170.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: bja:bll1440 pilus assembly protein YP_001993171.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: nha:Nham_0391 type II and III secretion system protein YP_001993172.1 TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; PFAM: Pilus biogenesis CpaD family protein; KEGG: nha:Nham_0390 pilus assembly protein CpaD YP_001993173.1 KEGG: bbt:BBta_7033 pilus assembly protein CpaE YP_001993174.1 PFAM: type II secretion system protein E; KEGG: bja:bll1436 pilus assembly protein YP_001993175.1 PFAM: type II secretion system protein; KEGG: bbt:BBta_7035 pilus assembly protein YP_001993176.1 PFAM: type II secretion system protein; KEGG: nha:Nham_0386 type II secretion system protein YP_001993177.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nha:Nham_0385 tetratricopeptide TPR_2 YP_001993178.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: nha:Nham_0384 leucyl aminopeptidase YP_001993179.1 PFAM: NLP/P60 protein; KEGG: bja:bll1430 hypothetical protein YP_001993180.1 PFAM: NUDIX hydrolase; KEGG: xau:Xaut_2637 NUDIX hydrolase YP_001993181.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: nwi:Nwi_0292 ABC transporter ATPase subunit YP_001993182.1 PFAM: ABC transporter inner membrane protein; KEGG: nwi:Nwi_0291 ABC transporter inner membrane protein YP_001993183.1 PFAM: ABC transporter inner membrane protein; KEGG: nha:Nham_0380 ABC transporter inner membrane protein YP_001993184.1 PFAM: extracellular solute-binding protein family 5; KEGG: nha:Nham_0379 extracellular solute-binding protein, family 5 YP_001993185.1 PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_7055 oligopeptide transport protein (ABC superfamily, peri_bind) YP_001993186.1 PFAM: cytochrome C class I; KEGG: bja:blr1423 cytochrome C YP_001993187.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_001993188.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis YP_001993189.1 PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B0850 transcriptional regulator, TetR family YP_001993190.1 PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_A2816 MFS efflux system, membrane fusion protein, EmrA subfamily YP_001993191.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_1385 drug resistance transporter EmrB/QacA subfamily YP_001993192.1 PFAM: Siderophore-interacting protein; oxidoreductase FAD-binding protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: mxa:MXAN_3639 iron-chelator utilization protein YP_001993193.1 PFAM: monooxygenase; KEGG: bja:blr1420 flavin dependant oxidoreductase YP_001993194.1 KEGG: bbt:BBta_7060 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_001993195.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_001993196.1 PFAM: excinuclease ABC subunit C; KEGG: bja:bsl5627 hypothetical protein YP_001993197.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: bbt:BBta_7067 glycerol kinase YP_001993198.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: bbt:BBta_4139 two-component response regulator YP_001993199.1 KEGG: bja:bll4572 nitrate transport protein YP_001993200.1 PFAM: globin; KEGG: bbt:BBta_3847 globin-like protein YP_001993201.1 PFAM: globin; KEGG: xau:Xaut_2501 globin YP_001993202.1 ferredoxin-dependent assimilatory nitrite reductase YP_001993203.1 Catalyzes the reduction of sulfite to sulfide, an essential step in the anaerobic sulfate-respiration pathway YP_001993204.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_7068 dehydrogenase/reductase SDR family member YP_001993205.1 TIGRFAM: pimeloyl-CoA dehydrogenase, small subunit; PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bra:BRADO0985 acyl-CoA dehydrogenase; Pimeloyl-CoA dehydrogenase PimD (small subunit) YP_001993206.1 TIGRFAM: pimeloyl-CoA dehydrogenase, large subunit; PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bra:BRADO0984 acyl-CoA dehydrogenase; pimeloyl-CoA dehydrogenase PimC (large subunit) YP_001993207.1 KEGG: bbt:BBta_7072 acetyl-CoA acetyltransferase with thiolase domain; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001993208.1 TIGRFAM: dicarboxylate/CoA ligase PimA; PFAM: AMP-dependent synthetase and ligase; KEGG: bra:BRADO0982 long-chain-fatty-acid--CoA ligase; long-chain acyl-CoA synthetase; pimeloyl-CoA ligase PimA YP_001993209.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bja:bll7821 probable fatty oxidation complex alpha subunit YP_001993210.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bja:blr7822 transcriptional regulatory protein YP_001993211.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr7823 ABC transporter ATP-binding protein YP_001993212.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr7824 ABC transporter ATP-binding protein YP_001993213.1 PFAM: inner-membrane translocator; KEGG: bbt:BBta_7078 high-affinity branched-chain amino acid transport system permease protein LivH YP_001993214.1 PFAM: inner-membrane translocator; KEGG: bra:BRADO0976 high-affinity branched-chain amino acid transport system permease protein LivM (ABC superfamily, membrane) YP_001993215.1 PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO0975 ABC-type branched-chain amino acid transporter periplasmic binding protein YP_001993216.1 KEGG: bja:blr7827 ABC transporter substrate-binding protein YP_001993217.1 PFAM: extracellular ligand-binding receptor; KEGG: bbt:BBta_7081 ABC-type branched-chain amino acid transporter periplasmic binding protein YP_001993218.1 PFAM: protein of unknown function DUF892; KEGG: nha:Nham_2670 protein of unknown function DUF892 YP_001993219.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: bra:BRADO6358 divalent cation transporter CorA-like YP_001993220.1 PFAM: carbohydrate-selective porin OprB; KEGG: bbt:BBta_3415 outer membrane protein of unknown function YP_001993221.1 KEGG: nha:Nham_2671 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001993222.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bbt:BBta_2981 GMC-type oxidoreductase YP_001993223.1 PFAM: alpha/beta hydrolase fold; KEGG: olu:OSTLU_86220 predicted protein YP_001993224.1 PFAM: aminotransferase class-III; KEGG: bra:BRADO2635 aminotransferase; ornithine aminotransferase YP_001993225.1 TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: bja:blr3008 hypothetical protein YP_001993226.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001993227.1 TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: radical SAM domain protein; KEGG: bja:bll3006 hypothetical protein YP_001993228.1 TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: gdi:GDI3819 phosphate-binding periplasmic protein precursor YP_001993229.1 TIGRFAM: phosphonoacetate hydrolase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: bbr:BB1010 phosphonoacetate hydrolase YP_001993230.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B0837 transcriptional regulator of phosphonate operon,LysR-family YP_001993231.1 TIGRFAM: hopanoid-associated phosphorylase; KEGG: nha:Nham_2681 hypothetical protein YP_001993232.1 TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: bja:blr3004 squalene-hopene cyclase YP_001993233.1 TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; KEGG: bbt:BBta_2968 phytoene dehydrogenase YP_001993234.1 TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: bja:blr3002 phytoene synthase YP_001993235.1 TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: bja:blr3001 hypothetical protein YP_001993236.1 KEGG: nwi:Nwi_2273 hypothetical protein YP_001993237.1 KEGG: bra:BRADO2625 hypothetical protein YP_001993238.1 KEGG: nha:Nham_2688 RND superfamily transporter YP_001993239.1 catalyzes the formation of acetaldehyde from ethanolamine YP_001993240.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bja:blr2995 hypothetical protein YP_001993241.1 PFAM: ethanolamine ammonia lyase large subunit; KEGG: bja:blr2994 ethanolamine ammonia-lyase heavy chain YP_001993242.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:bll0327 methyl-accepting chemotaxis protein YP_001993243.1 PFAM: Cache type 2 domain protein; KEGG: har:HEAR0017 methyl-accepting chemotaxis sensory transducer YP_001993244.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bra:BRADO2603 hypothetical protein YP_001993245.1 PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: bbt:BBta_2948 hypothetical protein YP_001993246.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bra:BRADO2601 hypothetical protein YP_001993247.1 PFAM: HpcH/HpaI aldolase; KEGG: bra:BRADO2598 aldolase YP_001993248.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: bra:BRADO2597 hypothetical oxidoreductase YP_001993249.1 TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; KEGG: bja:blr2971 transcriptional regulatory protein YP_001993250.1 KEGG: bja:bll2970 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase YP_001993251.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: bbt:BBta_2940 5-carboxymethyl-2-hydroxymuconate isomerase, HpcD-like protein YP_001993252.1 TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bja:bll2968 NAD-dependent succinate aldehyde dehydrogenase YP_001993253.1 TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll2967 metapyrocatechase YP_001993254.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bra:BRADO2592 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), bifunctional protein isomerase/decarboxylase HpcE-like YP_001993255.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bbt:BBta_2937 hypothetical protein YP_001993256.1 TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding protein; KEGG: bja:blr2895 ferredoxin reductase electron transfer component protein YP_001993257.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: bbt:BBta_2868 phenylacetic acid degradation protein PaaD YP_001993258.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: bbt:BBta_2867 phenylacetic acid degradation protein PaaC YP_001993259.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation YP_001993260.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA YP_001993261.1 PFAM: regulatory protein TetR; KEGG: xau:Xaut_0894 transcriptional regulator, TetR family YP_001993262.1 TIGRFAM: phasin; KEGG: bra:BRADO2517 hypothetical protein YP_001993263.1 KEGG: bbt:BBta_2862 hypothetical protein YP_001993264.1 PFAM: PGAP1 family protein; KEGG: bja:blr2879 hypothetical protein YP_001993265.1 KEGG: bja:bsr2878 hypothetical protein YP_001993266.1 PFAM: FAD dependent oxidoreductase; KEGG: nha:Nham_2698 D-amino-acid dehydrogenase YP_001993267.1 PFAM: acriflavin resistance protein; KEGG: nha:Nham_2699 acriflavin resistance protein YP_001993268.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: nha:Nham_2700 secretion protein HlyD YP_001993269.1 PFAM: regulatory protein TetR; KEGG: nha:Nham_2701 transcriptional regulator, TetR family YP_001993270.1 PFAM: cytochrome P450; KEGG: bja:bll2856 probable cytochrome P450 YP_001993271.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr2248 hypothetical protein YP_001993272.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bbt:BBta_2840 hypothetical protein YP_001993273.1 PFAM: PfkB domain protein; KEGG: bra:BRADO2493 sugar kinase YP_001993274.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nha:Nham_2703 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001993275.1 KEGG: bja:bll5638 hypothetical protein YP_001993276.1 PFAM: glycosyl transferase family 2; GtrA family protein; KEGG: bbt:BBta_5297 dolichol-phosphate mannosyltransferase YP_001993277.1 PFAM: protein of unknown function DUF72; KEGG: bra:BRADO2875 conserved hypothetical protein (DUF72) YP_001993279.1 KEGG: nha:Nham_2600 hypothetical protein YP_001993280.1 KEGG: bja:blr2820 hypothetical protein YP_001993281.1 PFAM: ABC transporter; KEGG: bbt:BBta_5303 ABC transporter (fused ATP-binding and permease components) YP_001993282.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll5649 ABC transporter ATP-binding protein YP_001993283.1 KEGG: bja:bll5650 hypothetical protein YP_001993284.1 PFAM: regulatory protein TetR; KEGG: nha:Nham_0716 transcriptional regulator, TetR family YP_001993285.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sme:SMa2301 response regulator YP_001993286.1 KEGG: bra:BRADO3443 hypothetical protein YP_001993287.1 KEGG: bja:bll5656 hypothetical protein YP_001993288.1 KEGG: bja:bll5657 hypothetical protein YP_001993289.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:bll3036 enoyl CoA hydratase YP_001993290.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: swi:Swit_2160 transcriptional regulator, LysR family YP_001993291.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; molybdopterin binding domain; KEGG: bra:BRADO2863 conserved hypothetical protein; molybdopterin binding protein with a nucleotide-diphospho-sugar transferase domain YP_001993292.1 KEGG: bbt:BBta_5313 hypothetical protein YP_001993293.1 PFAM: protein of unknown function DUF182; KEGG: bja:bll5661 hypothetical protein YP_001993294.1 PFAM: VWA containing CoxE family protein; KEGG: bja:bll5662 hypothetical protein YP_001993295.1 PFAM: ATPase AAA; SMART: ATPase AAA; KEGG: bbt:BBta_5316 ATPase, AAA family YP_001993296.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: bja:bll5664 carbon monoxide dehydrogenase medium subunit YP_001993297.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bra:BRADO2857 carbon-monoxide dehydrogenase small subunit, CoxS-like protein YP_001993298.1 PFAM: cyclase/dehydrase; carbon monoxide dehydrogenase subunit G; KEGG: bja:bll5666 hypothetical protein YP_001993299.1 KEGG: nha:Nham_2610 hypothetical protein YP_001993300.1 KEGG: ncr:NCU04059 hypothetical protein YP_001993301.1 PFAM: inner-membrane translocator; KEGG: bbt:BBta_5323 high-affinity branched-chain amino acid ABC transporter (permease protein) YP_001993302.1 PFAM: inner-membrane translocator; KEGG: bbt:BBta_5324 high-affinity branched-chain amino acid ABC transporter (permease protein) YP_001993303.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nwi:Nwi_2211 ABC transporter ATPase subunit YP_001993304.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_5326 high-affinity branched-chain amino acid ABC transporter (ATP-binding protein) YP_001993305.1 PFAM: extracellular ligand-binding receptor; KEGG: bbt:BBta_5327 high-affinity branched-chain amino acid ABC transporter (substrate-binding protein) YP_001993306.1 PFAM: excinuclease ABC subunit C; KEGG: nha:Nham_1409 excinuclease ABC, C subunit-like YP_001993307.1 PFAM: Integrase catalytic region; KEGG: sme:SMc04250 transposase protein YP_001993308.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: bja:blr2789 cytochrome C-type biogenesis protein YP_001993309.1 PFAM: peptidase S58 DmpA; KEGG: nha:Nham_2617 peptidase S58, DmpA YP_001993310.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: bra:BRADO2843 conserved hypothetical protein; signal peptide; calcium-binding domain (EF-hand) YP_001993311.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: bja:blr5680 ribulose-phosphate 3-epimerase YP_001993313.1 PFAM: Integrase catalytic region; KEGG: sme:SMc04250 transposase protein YP_001993314.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001993315.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001993316.1 KEGG: bra:BRADO2778 hypothetical protein YP_001993317.1 With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway YP_001993318.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001993319.1 PFAM: protein of unknown function DUF1476; KEGG: nwi:Nwi_1303 protein of unknown function DUF1476 YP_001993320.1 KEGG: nha:Nham_1630 hypothetical protein YP_001993321.1 KEGG: mar:MAE_29420 transcriptional regulator YP_001993322.1 PFAM: protein of unknown function DUF891; KEGG: mar:MAE_29280 hypothetical protein YP_001993323.1 KEGG: nha:Nham_2180 hypothetical protein YP_001993324.1 KEGG: bbt:BBta_5411 hypothetical protein YP_001993325.1 KEGG: maq:Maqu_0204 hypothetical protein YP_001993326.1 KEGG: xcv:XCVd0120 hypothetical protein YP_001993327.1 KEGG: pol:Bpro_1213 hypothetical protein YP_001993328.1 activates RNA polymerase to cleave back-tracked RNA during elongational pausing YP_001993329.1 KEGG: dge:Dgeo_1718 uracil-DNA glycosylase superfamily YP_001993330.1 KEGG: bbt:BBta_5701 hypothetical protein YP_001993331.1 KEGG: azc:AZC_3914 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001993332.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); protein of unknown function DUF559; KEGG: bja:bll5746 probable tRNA/rRNA methyltransferase YP_001993333.1 Converts isocitrate to alpha ketoglutarate YP_001993334.1 PFAM: protein of unknown function UPF0060; KEGG: bbt:BBta_2302 transmembrane protein YP_001993335.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bur:Bcep18194_B0671 transcriptional regulator, AraC family YP_001993336.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_3498 outer membrane ferripyochelin receptor YP_001993338.1 PFAM: PepSY-associated TM helix domain protein; KEGG: pfl:PFL_3499 PepSY-associated membrane protein YP_001993339.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pap:PSPA7_6319 probable potassium efflux transporter YP_001993340.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: cak:Caul_4668 sodium/hydrogen exchanger YP_001993341.1 PFAM: protein of unknown function UPF0118; KEGG: bra:BRADO5979 conserved hypothetical protein; membrane protein, membrane transport protein YP_001993342.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mrd:Mrad2831_0666 GCN5-related N-acetyltransferase YP_001993343.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001993344.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_001993345.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_001993346.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_001993347.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_001993348.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: bbt:BBta_3764 esterase/lipase/outer membrane autotransporter YP_001993349.1 KEGG: nha:Nham_4592 hypothetical protein YP_001993351.1 KEGG: bbt:BBta_2403 hypothetical protein YP_001993352.1 KEGG: cel:W01B6.7 COLlagen YP_001993353.1 KEGG: bbt:BBta_5457 hypothetical protein YP_001993354.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: bja:bll2244 probable cAMP-regulatory protein YP_001993355.1 KEGG: nha:Nham_1522 hypothetical protein YP_001993357.1 PFAM: thioesterase superfamily protein; KEGG: bja:blr5765 hypothetical protein YP_001993358.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: nwi:Nwi_1274 peptidase C14, caspase catalytic subunit P20 YP_001993359.1 KEGG: nwi:Nwi_1273 hypothetical protein YP_001993360.1 PFAM: DSBA oxidoreductase; KEGG: bbt:BBta_5468 hypothetical protein YP_001993361.1 PFAM: helix-turn-helix domain protein; KEGG: bja:bll5781 hypothetical protein YP_001993362.1 KEGG: bja:blr5786 integral membrane protein YP_001993363.1 PFAM: nuclear protein SET; KEGG: bra:BRADO5005 histone-lysine N-methyltransferase with a SET domain YP_001993364.1 KEGG: bja:blr5788 hypothetical protein YP_001993365.1 KEGG: bja:blr5793 hypothetical protein YP_001993366.1 KEGG: sus:Acid_6846 NHL repeat containing protein YP_001993367.1 KEGG: bbt:BBta_5480 exported protein of unknown function YP_001993368.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: bja:bll5796 fumarate hydratase class I YP_001993369.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mrd:Mrad2831_6061 addiction module toxin, RelE/StbE family YP_001993370.1 KEGG: xau:Xaut_3830 hypothetical protein YP_001993371.1 KEGG: nha:Nham_2563 hypothetical protein YP_001993372.1 KEGG: ddi:DDB_0229895 Wiscott-Aldrich syndrome protein YP_001993373.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: nha:Nham_2565 glutathione-dependent formaldehyde-activating, GFA YP_001993374.1 PFAM: glutathione S-transferase domain; KEGG: bja:bll5800 hypothetical protein YP_001993375.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: bja:bll5807 hypothetical protein YP_001993376.1 KEGG: nwi:Nwi_1138 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001993377.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_001993378.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_001993379.1 FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_001993380.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagella YP_001993381.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_001993382.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_001993383.1 KEGG: bbt:BBta_5498 exported protein of unknown function YP_001993384.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_001993385.1 KEGG: nha:Nham_1389 tetratricopeptide TPR_4 protein YP_001993386.1 KEGG: bja:blr5534 hypothetical protein YP_001993387.1 PFAM: carboxylesterase type B; KEGG: cmi:CMM_2085 carboxylesterase YP_001993388.1 PFAM: regulatory protein TetR; KEGG: reh:H16_A3218 transcriptional regulator, TetR/AcrR-family YP_001993389.1 KEGG: bra:BRADO5033 conserved hypothetical protein; signal peptide YP_001993390.1 KEGG: bja:bll5824 hypothetical protein YP_001993391.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_001993392.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring YP_001993393.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum YP_001993394.1 makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella YP_001993395.1 required for the assembly of the flagellar basal body P-ring; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum YP_001993396.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod YP_001993397.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: atc:AGR_L_3217 RND multidrug efflux transporter MexD YP_001993398.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: smd:Smed_3399 efflux transporter RND family, MFP subunit YP_001993399.1 PFAM: regulatory protein TetR; KEGG: atc:AGR_C_4219 hypothetical protein YP_001993400.1 KEGG: nha:Nham_0415 hypothetical protein YP_001993401.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: nha:Nham_1346 transcriptional regulators, TraR/DksA family YP_001993402.1 regulator of the sigma 54 transcriptional activator FlbD; represses FlbD when the class II flagellar structure is absent and activates FlbD when the structure is present YP_001993403.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_001993404.1 KEGG: bja:blr5839 chemotactic signal-response protein CheL YP_001993405.1 KEGG: nwi:Nwi_1109 hypothetical protein YP_001993406.1 KEGG: nha:Nham_1340 hypothetical protein YP_001993407.1 acts as an activator of flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum YP_001993408.1 post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA; Bradyrhizobium has one thick and several thin flagella, the Bradyrhizobium protein in this cluster is associated with the thin flagella YP_001993409.1 structural flagella protein; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_001993410.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bra:BRADO1360 O-linked N-acetylglucosamine transferase, SPINDLY family; TPR domain protein YP_001993411.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sus:Acid_2243 thiamine pyrophosphate enzyme TPP binding domain protein YP_001993412.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vha:VIBHAR_03037 hypothetical protein YP_001993413.1 PFAM: nucleotidyl transferase; KEGG: bbt:BBta_5632 sugar-phosphate nucleotidyl transferase YP_001993414.1 TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: bra:BRADO5164 bifunctional enzyme (sugar kinase/cytidylyltransferase) YP_001993415.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_5638 alcohol dehydrogenase (zinc-binding) YP_001993416.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: cbd:COXBU7E912_0706 pyruvate dehydrogenase (acetyl-transferring) E1 component, beta subunit YP_001993417.1 PFAM: dehydrogenase E1 component; KEGG: cbu:CBU_0693 dehydrogenase, E1 component, alpha subunit YP_001993418.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: cbd:COXBU7E912_0696 methyltransferase YP_001993419.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bbt:BBta_5635 dTDP-glucose 4,6-dehydratase YP_001993420.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bbt:BBta_5633 sugar-nucleotide epimerase/dehydratase YP_001993421.1 PFAM: sugar isomerase (SIS); KEGG: bja:bll5420 phosphoheptose isomerase YP_001993422.1 TIGRFAM: methyltransferase FkbM family; KEGG: nph:NP3626A homolog 5 to S-adenosylmethionine-dependent methyltransferase 3 YP_001993423.1 structural flagella protein; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_001993424.1 KEGG: nwi:Nwi_1101 hypothetical protein YP_001993425.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: nha:Nham_1332 flagellar hook-associated protein YP_001993426.1 PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: nwi:Nwi_1099 flagellar basal body rod protein, FlaE YP_001993427.1 KEGG: bbt:BBta_5808 sensor histidine kinase with multiple PAS and a response regulator receiver domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001993428.1 KEGG: bbt:BBta_2392 hypothetical protein YP_001993429.1 KEGG: cbd:COXBU7E912_1484 hypothetical protein YP_001993430.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_001993431.1 PFAM: FAD dependent oxidoreductase; KEGG: bja:bll5856 hypothetical protein YP_001993432.1 PFAM: phosphoglycerate mutase; KEGG: nha:Nham_1328 phosphohistidine phosphatase, SixA YP_001993433.1 PFAM: UspA domain protein; KEGG: bbt:BBta_5541 universal stress protein (Usp) YP_001993434.1 KEGG: nha:Nham_1326 hypothetical protein YP_001993435.1 KEGG: nha:Nham_1325 hypothetical protein YP_001993436.1 PFAM: protein of unknown function DUF892; KEGG: bja:bll5866 hypothetical protein YP_001993437.1 KEGG: bra:BRADO5076 hypothetical protein YP_001993438.1 KEGG: bbt:BBta_5548 exported protein of unknown function YP_001993439.1 KEGG: bja:bll5882 hypothetical protein YP_001993440.1 KEGG: aeh:Mlg_2800 O-antigen polymerase YP_001993441.1 PFAM: glycosyl transferase group 1; KEGG: bte:BTH_I1330 possible glycosyltransferase WbpX YP_001993442.1 PFAM: glycosyl transferase family 2; KEGG: ppd:Ppro_3227 glycosyl transferase, family 2 YP_001993443.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: nha:Nham_2780 GDP-mannose 4,6-dehydratase YP_001993444.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: nha:Nham_2781 NAD-dependent epimerase/dehydratase YP_001993445.1 PFAM: Chloride channel core; KEGG: bra:BRADO3095 H(+)/Cl(-) exchange transporter YP_001993446.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: nwi:Nwi_1089 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001993447.1 PFAM: thioesterase superfamily protein; KEGG: bja:blr5884 hypothetical protein YP_001993448.1 PFAM: ferredoxin; KEGG: bbt:BBta_5552 2Fe-2S ferredoxin (FdII) YP_001993449.1 PFAM: Hpt domain protein; KEGG: bja:bll5886 two-component hybrid sensor and regulator YP_001993451.1 KEGG: bra:BRADO5083 conserved hypothetical protein; methyl-accepting chemotaxis protein YP_001993452.1 PFAM: Amidase; KEGG: pla:Plav_2598 amidase YP_001993453.1 KEGG: bja:blr3164 hypothetical protein YP_001993454.1 PFAM: mammalian cell entry related domain protein; KEGG: bja:bll5892 hypothetical protein YP_001993455.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO5085 ABC transporter (ATP-binding protein) YP_001993456.1 PFAM: protein of unknown function DUF140; KEGG: nha:Nham_1315 protein of unknown function DUF140 YP_001993457.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bja:blr5895 hypothetical protein YP_001993458.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_5559 permease of the major facilitator superfamily YP_001993459.1 KEGG: bra:BRADO5089 hypothetical protein YP_001993460.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bbt:BBta_5562 threonine dehydratase YP_001993461.1 PFAM: glycosyl transferase group 1; KEGG: nha:Nham_1312 glycosyl transferase, group 1 YP_001993462.1 PFAM: metallophosphoesterase; KEGG: nha:Nham_1311 metallophosphoesterase YP_001993463.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mrd:Mrad2831_0345 phosphatidylethanolamine N-methyltransferase YP_001993464.1 KEGG: nha:Nham_1310 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1 YP_001993465.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: nha:Nham_1309 transcriptional regulator, AsnC family YP_001993466.1 KEGG: bbt:BBta_5605 diheme cytochrome C-type YP_001993467.1 PFAM: cytochrome C prime; KEGG: bbt:BBta_5606 cytochrome C, class II YP_001993468.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bra:BRADO5140 aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein YP_001993469.1 KEGG: nha:Nham_2128 hypothetical protein YP_001993470.1 PFAM: carbamoyltransferase; KEGG: nha:Nham_2127 carbamoyltransferase YP_001993471.1 TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: bbt:BBta_5611 virulence factor MviN-like protein YP_001993472.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bbt:BBta_5614 aminotransferase YP_001993473.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bja:bll5918 dehydrogenase YP_001993474.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bja:bll5920 UDP-glucuronic acid epimerase YP_001993475.1 KEGG: bja:blr5921 hypothetical protein YP_001993476.1 PFAM: glycosyl transferase family 4; KEGG: bbt:BBta_5665 undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase YP_001993477.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: bja:bll5925 capsular polysaccharide biosynthesis protein YP_001993478.1 TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: bbt:BBta_5668 kinase/ sugar nucleotide transferase YP_001993479.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: bja:bll5928 probable ADP-L-glycero-D-manno-heptose-6-epimerase YP_001993480.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: bra:BRADO5203 ADP-heptose--LPS heptosyltransferase II YP_001993481.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_001993482.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: polynucleotide kinase 3 phosphatase central region; KEGG: nha:Nham_1295 HAD-superfamily hydrolase subfamily IIIA YP_001993483.1 TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: nha:Nham_1294 lipopolysaccharide heptosyltransferase I YP_001993484.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bja:blr5931 UDP-galactose 4-epimerase YP_001993485.1 PFAM: ABC transporter transmembrane region; ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_1292 ABC transporter YP_001993486.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:blr5933 hypothetical protein YP_001993487.1 KEGG: nwi:Nwi_0909 conserved hypothetical protein, DNA helicase YP_001993488.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_2825 PAS:GGDEF YP_001993489.1 KEGG: bja:bll0174 hypothetical protein YP_001993490.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: bja:bll6060 catabolite gene activator YP_001993493.1 PFAM: radical SAM domain protein; KEGG: dau:Daud_1343 radical SAM domain protein YP_001993494.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sme:SMa1591 adenylate cyclase YP_001993495.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bbt:BBta_4919 DEAD-box cold-shock protein, ATP-independent RNA helicase YP_001993496.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:bll2940 acyl-CoA dehydrogenase YP_001993497.1 KEGG: bbt:BBta_7669 hypothetical protein YP_001993499.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001993500.1 KEGG: bbt:BBta_3101 hypothetical protein YP_001993502.1 KEGG: nha:Nham_2472 hypothetical protein YP_001993504.1 KEGG: bbt:BBta_5569 hypothetical protein YP_001993505.1 PFAM: GAF domain protein; KEGG: swi:Swit_5219 signal transduction histidine kinase YP_001993506.1 PFAM: GAF domain protein; HWE histidine kinase; KEGG: gox:GOX1619 two component sensor histidine kinase YP_001993507.1 PFAM: response regulator receiver; KEGG: mlo:mll9592 response regulator YP_001993508.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Autotransporter beta- domain protein; KEGG: azc:AZC_3227 outer membrane autotransporter barrel precursor YP_001993509.1 PFAM: thioesterase superfamily protein; KEGG: sen:SACE_1886 phenylacetic acid degradation-related protein YP_001993510.1 PFAM: regulatory protein DeoR; hypothetical protein; KEGG: pla:Plav_0108 helix-turn-helix type 11 domain protein YP_001993511.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rsq:Rsph17025_4105 hypothetical protein YP_001993512.1 PFAM: PilT protein domain protein; KEGG: pna:Pnap_1213 PilT protein domain protein YP_001993514.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_001993515.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001993516.1 KEGG: bra:BRADO5240 hypothetical protein YP_001993517.1 KEGG: bja:bll8129 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_001993518.1 PFAM: extracellular ligand-binding receptor; KEGG: xau:Xaut_0893 extracellular ligand-binding receptor YP_001993519.1 PFAM: inner-membrane translocator; KEGG: xau:Xaut_0892 inner-membrane translocator YP_001993520.1 PFAM: inner-membrane translocator; KEGG: xau:Xaut_0891 inner-membrane translocator YP_001993521.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: xau:Xaut_0890 ABC transporter YP_001993522.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: xau:Xaut_0889 ABC transporter YP_001993523.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate YP_001993524.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll5949 ABC transporter ATP-binding protein YP_001993525.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll5950 ABC transporter ATP-binding protein YP_001993526.1 PFAM: inner-membrane translocator; KEGG: bja:bll5951 ABC transporter permease protein YP_001993527.1 PFAM: inner-membrane translocator; KEGG: bra:BRADO5253 high-affinity branched-chain amino acid transport system permease protein YP_001993528.1 PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO5254 conserved hypothetical protein; exported protein; ABC-type branched-chain amino acid transport systems YP_001993529.1 KEGG: bja:blr5954 hypothetical protein YP_001993530.1 KEGG: mrd:Mrad2831_0095 hypothetical protein YP_001993531.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_001993532.1 PFAM: uroporphyrinogen III synthase HEM4; KEGG: bbt:BBta_5710 uroporphyrinogen-III synthase YP_001993533.1 KEGG: rme:Rmet_1862 extracellular ligand-binding receptor YP_001993534.1 PFAM: inner-membrane translocator; KEGG: rso:RSc1751 amino acid transmembrane transmembrane protein YP_001993535.1 PFAM: inner-membrane translocator; KEGG: reu:Reut_A1401 inner-membrane translocator YP_001993536.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rso:RSc1753 probable amino-acid ATP-binding ABC transporter protein YP_001993537.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rso:RSc1754 probable amino-acid ATP-binding ABC transporter protein YP_001993538.1 KEGG: bra:BRADO7117 hypothetical protein YP_001993539.1 KEGG: sco:SCO4023 integral membrane protein YP_001993540.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr5962 ABC transporter ATP-binding protein YP_001993541.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bra:BRADO5264 long-chain-fatty-acid-CoA ligase YP_001993542.1 PFAM: inner-membrane translocator; KEGG: bja:blr5964 ABC transporter permease protein YP_001993543.1 PFAM: inner-membrane translocator; KEGG: bja:blr5965 ABC transporter permease protein YP_001993544.1 KEGG: bja:blr5966 ABC transporter substrate-binding protein YP_001993545.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO5268 high-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding protein) YP_001993546.1 PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN1503 glycosyltransferase (group 1) YP_001993547.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: pmy:Pmen_1873 UDP-N-acetylglucosamine 2-epimerase YP_001993548.1 PFAM: glycosyl transferase group 1; KEGG: har:HEAR1144 phosphatidylinositol alpha-mannosyltransferase YP_001993550.1 PFAM: glycosyl transferase group 1; KEGG: rru:Rru_A2739 hypothetical protein YP_001993551.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_3710 glycosyl transferase group 1 YP_001993552.1 PFAM: glycosyl transferase group 1; KEGG: rty:RT0326 probable glycosyltransferase YP_001993553.1 KEGG: mex:Mext_3711 hypothetical protein YP_001993554.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: rco:RC0456 dTDP-4-dehydrorhamnose reductase YP_001993555.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; polysaccharide biosynthesis domain protein; KEGG: pfl:PFL_5106 polysaccharide biosynthesis protein YP_001993556.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_3710 glycosyl transferase group 1 YP_001993557.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bra:BRADO5242 hypothetical protein; SAM-dependent methyltransferase domain YP_001993558.1 PFAM: ABC transporter; KEGG: xom:XOO_0717 ABC transporter system integral membrane protein YP_001993559.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rca:Rcas_3643 ABC transporter YP_001993560.1 KEGG: nmu:Nmul_A2516 methyltransferase YP_001993561.1 KEGG: azo:azo3271 probable asparagine synthetase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase YP_001993562.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: rru:Rru_A2737 glycosyl transferase, family 2 YP_001993563.1 KEGG: dvl:Dvul_2945 hypothetical protein YP_001993564.1 PFAM: transposase IS3/IS911 family protein; KEGG: oan:Oant_4528 transposase IS3/IS911 family protein YP_001993565.1 PFAM: Integrase catalytic region; KEGG: bja:blr2054 transposase YP_001993566.1 PFAM: acyltransferase 3; KEGG: rde:RD1_3390 acyltransferase YP_001993568.1 KEGG: bbt:BBta_1854 hypothetical protein YP_001993569.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_001993570.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_001993571.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_001993572.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001993573.1 PFAM: DoxX family protein; KEGG: bbt:BBta_6801 hypothetical protein YP_001993574.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: nwi:Nwi_2452 transcriptional regulatory proteins, AsnC/Lrp family YP_001993575.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nwi:Nwi_2453 thioredoxin reductase YP_001993576.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bra:BRADO1320 transcriptional regulatory protein, LysR family YP_001993577.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: nwi:Nwi_2455 cobyrinic acid a,c-diamide synthase YP_001993578.1 KEGG: nwi:Nwi_2456 hypothetical protein YP_001993579.1 KEGG: bja:bll7386 hypothetical protein YP_001993581.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: nha:Nham_0392 Flp pilus assembly CpaB YP_001993582.1 TIGRFAM: phasin family protein; phasin; PFAM: Phasin 2 family protein; KEGG: bja:bll7395 hypothetical protein YP_001993583.1 TIGRFAM: phasin; KEGG: nha:Nham_1250 phasin 2 YP_001993584.1 KEGG: bja:blr7396 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001993585.1 PFAM: Rv0623 family protein transcription factor; KEGG: gvi:gsr3224 hypothetical protein YP_001993586.1 PFAM: PilT protein domain protein; KEGG: rle:pRL100005 conserved hypothetical PIN domain protein YP_001993587.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bja:blr7084 transcriptional regulatory protein YP_001993588.1 KEGG: bja:bsl7085 hypothetical protein YP_001993589.1 KEGG: bbt:BBta_6826 copper-containing nitrite reductase (NO-forming) NirK; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3 YP_001993590.1 PFAM: protein of unknown function DUF323; KEGG: bra:BRADO1226 nitrate reductase, NirV-like; signal peptide YP_001993591.1 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine YP_001993592.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate YP_001993593.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bra:BRADO2723 conserved hypothetical protein; metallo-beta-lactamase family protein YP_001993595.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: bxe:Bxe_C0717 hypothetical protein YP_001993596.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_C0718 transcriptional regulator, LysR family YP_001993597.1 PFAM: extracellular solute-binding protein family 1; KEGG: mes:Meso_0170 extracellular solute-binding protein, family 1 YP_001993598.1 PFAM: ABC transporter inner membrane protein; KEGG: pde:Pden_4446 ABC transporter inner membrane protein YP_001993599.1 KEGG: nha:Nham_1248 hypothetical protein YP_001993600.1 KEGG: bra:BRADO1224 acetyl-CoA:acetoacetyl-CoA transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_001993601.1 KEGG: bbt:BBta_6830 acetyl-CoA/acetoacetyl-CoA transferase, alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_001993602.1 PFAM: AsmA family protein; KEGG: nha:Nham_1245 AsmA YP_001993603.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_6836 putrescine transport protein (ABC superfamily, membrane) YP_001993604.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:bll7104 ABC transporter permease protein YP_001993605.1 KEGG: bbt:BBta_6838 putrescine transport protein (ABC superfamily, atp_bind); TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; Transport-associated OB domain protein; SMART: ATPase AAA YP_001993606.1 PFAM: transcriptional regulator TrmB; KEGG: xau:Xaut_1568 transcriptional regulator, TrmB YP_001993607.1 PFAM: ABC transporter inner membrane protein; KEGG: mka:MK0602 homolog of ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, permease component YP_001993608.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ckl:CKL_1039 predicted ABC transporter ATP-binding protein YP_001993609.1 KEGG: mex:Mext_3405 aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein YP_001993610.1 KEGG: mms:mma_2479 hypothetical protein YP_001993611.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sfu:Sfum_2312 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001993612.1 KEGG: bra:BRADO1213 diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains precursor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001993613.1 PFAM: FAD dependent oxidoreductase; KEGG: bra:BRADO1212 NAD binding site:FAD dependent oxidoreductase YP_001993614.1 PFAM: regulatory protein GntR HTH; KEGG: rsh:Rsph17029_3903 transcriptional regulator, GntR family YP_001993615.1 PFAM: GntR domain protein; KEGG: azo:azo2437 transcriptional regulator YP_001993616.1 KEGG: bra:BRADO6234 ABC transporter (substrate-binding protein); branched-chain amino acid transporter YP_001993617.1 KEGG: bja:bsl7109 hypothetical protein YP_001993618.1 PFAM: protein of unknown function DUF465; KEGG: nha:Nham_1238 protein of unknown function DUF465 YP_001993619.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: nha:Nham_1237 diguanylate cyclase (GGDEF domain) YP_001993620.1 KEGG: bbt:BBta_6848 phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_001993621.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_001993622.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001993623.1 KEGG: bja:bll7119 hypothetical protein YP_001993624.1 KEGG: bja:bsl7120 hypothetical protein YP_001993625.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bbt:BBta_3517 hypothetical protein YP_001993626.1 PFAM: NAD(P) transhydrogenase beta subunit; KEGG: bja:bll7124 NAD(P)+ transhydrogenase beta chain YP_001993627.1 KEGG: nwi:Nwi_0996 NAD(P) transhydrogenase subunit alpha part YP_001993628.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: bja:bll7126 NAD(P)+ transhydrogenase YP_001993629.1 PFAM: aa3 type cytochrome C oxidase subunit IV; KEGG: bja:bsl7127 hypothetical protein YP_001993630.1 KEGG: bbt:BBta_6860 death on curing protein YP_001993631.1 TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: bbt:BBta_6862 oligoendopeptidase F YP_001993632.1 PFAM: Integral membrane protein TerC; KEGG: mes:Meso_0688 integral membrane protein TerC YP_001993633.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; SMART: ATPase AAA; KEGG: bja:blr7130 two-component response regulator YP_001993634.1 PFAM: peptidoglycan-binding domain 1 protein; KEGG: bja:blr7131 hypothetical protein YP_001993635.1 PFAM: protein of unknown function DUF882; peptidase M15A; KEGG: nha:Nham_1222 protein of unknown function DUF882 YP_001993636.1 KEGG: nha:Nham_1221 hypothetical protein YP_001993637.1 PFAM: protein of unknown function DUF1244; KEGG: bja:bll7136 hypothetical protein YP_001993638.1 PFAM: protein of unknown function DUF1036; KEGG: bja:blr7137 hypothetical protein YP_001993639.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001993640.1 PFAM: OsmC family protein; KEGG: azc:AZC_1807 OsmC-like protein YP_001993641.1 PFAM: alpha/beta hydrolase fold; KEGG: bja:bll7545 esterase YP_001993642.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bra:BRADO6136 conserved hypothetical protein; TPR repeat precursor YP_001993643.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif YP_001993644.1 PFAM: amidohydrolase 2; KEGG: bra:BRADO6138 amidohydrolase YP_001993645.1 KEGG: bbt:BBta_1654 2-haloacid dehalogenase; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_001993646.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bja:blr7561 hypothetical protein YP_001993647.1 KEGG: bja:bsl2782 hypothetical protein YP_001993648.1 PFAM: chemotaxis sensory transducer; KEGG: mag:amb0994 methyl-accepting chemotaxis protein YP_001993649.1 KEGG: bja:blr2975 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001993651.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: nha:Nham_3553 polysaccharide biosynthesis protein YP_001993652.1 KEGG: bra:BRADO3468 hypothetical protein YP_001993653.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nha:Nham_3554 3-hydroxybutyrate dehydrogenase YP_001993654.1 PFAM: Patatin; KEGG: nha:Nham_3555 patatin YP_001993655.1 PFAM: SCP-like extracellular; KEGG: bja:blr1486 hypothetical protein YP_001993656.1 PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: bbt:BBta_4311 glutamine synthetase II YP_001993658.1 catalyzes the formation of glutamate from glutamine YP_001993659.1 PFAM: conserved hypothetical protein; KEGG: bra:BRADO1068 hypothetical protein YP_001993660.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bja:blr1479 ferredoxin-nitrite reductase YP_001993661.1 KEGG: bra:BRADO1066 hypothetical protein YP_001993662.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bbt:BBta_6982 siroheme synthase YP_001993663.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA YP_001993664.1 PFAM: CsbD family protein; KEGG: ret:RHE_CH01802 hypothetical protein YP_001993665.1 KEGG: bja:bsr1472 hypothetical protein YP_001993666.1 KEGG: bja:blr1469 hypothetical protein YP_001993667.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr1468 hypothetical protein YP_001993668.1 PFAM: protein of unknown function UPF0118; KEGG: bja:bll1467 hypothetical protein YP_001993669.1 KEGG: bja:bll7790 hypothetical protein YP_001993670.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media YP_001993671.1 KEGG: bra:BRADO1048 hypothetical protein YP_001993672.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001993673.1 PFAM: HWE histidine kinase; KEGG: bbt:BBta_7004 signal transduction histidine kinase with CHASE domain YP_001993674.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: bra:BRADO1045 urease accessory protein UreG YP_001993675.1 KEGG: nha:Nham_1001 hypothetical protein YP_001993676.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: bbt:BBta_5740 dimethyl sulfoxide reductase(DMSO reductase) YP_001993677.1 KEGG: bja:blr7579 hypothetical protein YP_001993678.1 PFAM: cyclic nucleotide-binding; ion transport protein; ion transport 2 domain protein; KEGG: azc:AZC_1864 cyclic nucleotide-binding protein YP_001993679.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bja:bll6061 transcriptional regulatory protein YP_001993680.1 KEGG: bra:BRADO5301 conserved hypothetical protein; cytochrome C YP_001993681.1 PFAM: mammalian cell entry related domain protein; KEGG: nha:Nham_1923 mammalian cell entry related YP_001993682.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_1922 ABC transporter YP_001993683.1 PFAM: protein of unknown function DUF140; KEGG: nha:Nham_1921 protein of unknown function DUF140 YP_001993684.1 KEGG: nha:Nham_1920 hypothetical protein YP_001993685.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: bja:bll6068 hypothetical protein YP_001993686.1 PFAM: CBS domain containing protein; KEGG: bra:BRADO2437 conserved hypothetical protein with CBS domain YP_001993687.1 KEGG: nha:Nham_1915 hypothetical protein YP_001993688.1 PFAM: alpha/beta hydrolase fold; poly-beta-hydroxybutyrate polymerase domain protein; KEGG: bja:bll6073 probable poly-beta-hydroxybutyrate polymerase YP_001993689.1 PFAM: UspA domain protein; KEGG: nha:Nham_1913 UspA YP_001993690.1 PFAM: UspA domain protein; KEGG: bja:bll2590 hypothetical protein YP_001993691.1 PFAM: CBS domain containing protein; transport-associated; KEGG: bra:BRADO5312 conserved hypothetical protein with CBS domain YP_001993692.1 KEGG: bja:bll2760 two-component oxygen-sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001993693.1 response regulator for histidine kinase FixL; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes YP_001993694.1 PFAM: response regulator receiver; KEGG: bja:bll2758 two-component response regulator YP_001993695.1 transcriptional regulator that positively regulated fixLJ operon; upregulated transcription by FixJ; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes YP_001993696.1 KEGG: rsq:Rsph17025_0776 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001993697.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rsh:Rsph17029_1748 NADH dehydrogenase (quinone) YP_001993698.1 KEGG: rsq:Rsph17025_1700 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001993699.1 KEGG: rsq:Rsph17025_1699 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_001993700.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: rsh:Rsph17029_1745 NADH-ubiquinone oxidoreductase, chain 4L YP_001993701.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: rsh:Rsph17029_1744 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 YP_001993702.1 Catalyzes the transfer of electrons from NADH to quinone YP_001993703.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: rsh:Rsph17029_1742 respiratory-chain NADH dehydrogenase, subunit 1 YP_001993704.1 Catalyzes the transfer of electrons from NADH to quinone YP_001993705.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rsh:Rsph17029_1740 NADH dehydrogenase (quinone) YP_001993706.1 Catalyzes the transfer of electrons from NADH to quinone YP_001993707.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms YP_001993708.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_001993709.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: pap:PSPA7_2570 NADH dehydrogenase I chain A YP_001993710.1 responsible for transport of beta-1,2-glucans from the cytoplasm to periplasm; inner membrane ABC transporter permease component; Cgt; ChvA; NdvA YP_001993711.1 PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: bja:bll1320 probable penicillin-binding protein YP_001993712.1 activates fatty acids by binding to coenzyme A YP_001993713.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bja:bll1317 peroxiredoxin YP_001993714.1 PFAM: Integrase catalytic region; KEGG: sme:SMc04250 transposase protein YP_001993715.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_001993716.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine YP_001993717.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001993718.1 PFAM: protein of unknown function DUF1013; KEGG: nwi:Nwi_2690 protein of unknown function DUF1013 YP_001993720.1 KEGG: ecs:ECs3238 hypothetical protein YP_001993721.1 KEGG: azc:AZC_4237 hypothetical protein YP_001993722.1 KEGG: cdf:CD3165 hypothetical protein YP_001993724.1 KEGG: pla:Plav_2328 hypothetical protein YP_001993725.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bja:blr7666 transcriptional regulatory protein YP_001993726.1 KEGG: bra:BRADO1888 hypothetical protein YP_001993727.1 PFAM: BLUF domain protein; KEGG: mex:Mext_4031 BLUF domain protein YP_001993728.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_1677 LysR substrate-binding YP_001993729.1 PFAM: YceI family protein; KEGG: mrd:Mrad2831_5253 YceI family protein YP_001993730.1 PFAM: nitroreductase; KEGG: cvi:CV_1813 hypothetical protein YP_001993731.1 PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: gbe:GbCGDNIH1_1055 dioxygenase YP_001993732.1 PFAM: methyltransferase type 11; KEGG: scl:sce7770 hypothetical protein YP_001993733.1 KEGG: psb:Psyr_0778 type III effector HopAG1 YP_001993734.1 KEGG: rsq:Rsph17025_3200 hypothetical protein YP_001993735.1 PFAM: phosphate-starvation-inducible E; KEGG: rsq:Rsph17025_1887 phosphate-starvation-inducible E YP_001993736.1 PFAM: antenna complex alpha/beta subunit; KEGG: bbt:BBta_3081 light harvesting protein B-800-850 YP_001993737.1 PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1408 antenna complex, alpha/beta subunit YP_001993738.1 KEGG: nha:Nham_1125 hypothetical protein YP_001993739.1 KEGG: nha:Nham_1124 hypothetical protein YP_001993740.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001993741.1 PFAM: type IV pilus assembly PilZ; KEGG: nwi:Nwi_0398 hypothetical protein YP_001993742.1 PFAM: aldo/keto reductase; KEGG: bbt:BBta_2445 2,5-diketo-D-gluconate reductase B YP_001993743.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: nha:Nham_1120 hypothetical protein YP_001993744.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr7055 hypothetical transport protein YP_001993745.1 KEGG: bja:bll7059 hypothetical protein YP_001993746.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bra:BRADO5941 transport protein; permease of the drug/metabolite transporter (DMT) superfamily YP_001993747.1 KEGG: nwi:Nwi_2996 methyl-accepting chemotaxis protein YP_001993748.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:blr2932 hypothetical protein YP_001993749.1 PFAM: Rubrerythrin; protein of unknown function DUF125 transmembrane; KEGG: bja:blr7895 hypothetical protein YP_001993750.1 KEGG: bra:BRADO5942 conserved hypothetical protein; signal peptide YP_001993751.1 KEGG: bja:blr7338 hypothetical protein YP_001993752.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bra:BRADO5943 methyl-accepting chemotaxis sensory transducer YP_001993753.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bja:bll7062 methyl accepting chemotaxis protein YP_001993754.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_001993755.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_001993756.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:blr2976 methyl accepting chemotaxis protein YP_001993757.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: bja:blr2975 hypothetical protein YP_001993758.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_1821 hypothetical protein YP_001993759.1 PFAM: glutathione S-transferase domain; KEGG: bja:bll7404 hypothetical glutathione S-transferase like protein YP_001993760.1 TIGRFAM: outer membrane insertion C-terminal signal; KEGG: nha:Nham_1117 hypothetical protein YP_001993761.1 KEGG: nha:Nham_1116 hypothetical protein YP_001993762.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll7407 fosmidomycin resistance protein YP_001993763.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_001993764.1 KEGG: nwi:Nwi_2974 hypothetical protein YP_001993765.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: bja:blr7409 L-lactate dehydrogenase YP_001993766.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr2952 probable enoyl-CoA hydratase YP_001993767.1 PFAM: response regulator receiver; KEGG: bra:BRADO3693 response regulator receiver protein (CheY-like) YP_001993768.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: nha:Nham_1109 shikimate 5-dehydrogenase YP_001993769.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: bra:BRADO5963 sulfate transporter with a STAS domain (C-terminal) YP_001993770.1 KEGG: bra:BRADO5964 conserved hypothetical protein; helix-turn-helix motif YP_001993771.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001993772.1 PFAM: protein of unknown function DUF992; KEGG: bja:bll7415 hypothetical protein YP_001993773.1 PFAM: protein of unknown function DUF992; KEGG: nha:Nham_1104 protein of unknown function DUF992 YP_001993774.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001993775.1 PFAM: glutathione S-transferase domain; KEGG: bbt:BBta_1799 glutathione S-transferase (GST) YP_001993777.1 PFAM: glucose sorbosone dehydrogenase; KEGG: nwi:Nwi_2982 hypothetical protein YP_001993778.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: azc:AZC_0007 phospholipid/glycerol acyltransferase YP_001993779.1 unwinds double stranded DNA YP_001993780.1 PFAM: aldo/keto reductase; KEGG: bja:blr7422 oxidoreductase YP_001993781.1 KEGG: nwi:Nwi_2494 hypothetical protein YP_001993782.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bbt:BBta_1791 haloacid dehalogenase/epoxide hydrolase YP_001993783.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001993784.1 PFAM: glutathione S-transferase domain; KEGG: bra:BRADO5989 glutathione S-transferase (GST) YP_001993785.1 PFAM: beta-lactamase domain protein; KEGG: rme:Rmet_2149 beta-lactamase-like protein YP_001993787.1 KEGG: bbt:BBta_6293 membrane protein of unknown function YP_001993788.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001993789.1 PFAM: Domain of unknown function DUF1902; KEGG: ttj:TTHA1013 hypothetical protein YP_001993790.1 PFAM: YcfA family protein; KEGG: tth:TTC1885 hypothetical protein YP_001993791.1 PFAM: plasmid maintenance system killer; KEGG: eba:ebA1560 plasmid maintenance system killer protein YP_001993792.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: sus:Acid_0689 plasmid maintenance system antidote protein, XRE family YP_001993793.1 KEGG: nha:Nham_2927 hypothetical protein YP_001993794.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001993795.1 KEGG: nha:Nham_2926 hypothetical protein YP_001993796.1 KEGG: bja:blr7434 hypothetical protein YP_001993797.1 KEGG: nwi:Nwi_2500 hypothetical protein YP_001993798.1 KEGG: bra:BRADO6012 conserved hypothetical protein; signal peptide YP_001993799.1 PFAM: MaoC domain protein dehydratase; KEGG: nha:Nham_3098 MaoC-like dehydratase YP_001993800.1 PFAM: MaoC domain protein dehydratase; KEGG: bbt:BBta_1771 hypothetical protein YP_001993801.1 KEGG: nha:Nham_3100 hypothetical protein YP_001993802.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001993803.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001993804.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_001993805.1 PFAM: protein of unknown function DUF526; KEGG: bra:BRADO6005 hypothetical protein YP_001993806.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_001993807.1 PFAM: protein of unknown function DUF185; KEGG: bra:BRADO6003 hypothetical protein YP_001993808.1 PFAM: protein of unknown function DUF152; KEGG: bra:BRADO6002 hypothetical protein YP_001993809.1 KEGG: bja:blr7447 hypothetical protein YP_001993810.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_001993811.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001993812.1 PFAM: Protein of unknown function DUF1790; KEGG: nha:Nham_3105 hypothetical protein YP_001993813.1 PFAM: GCN5-related N-acetyltransferase; KEGG: psb:Psyr_0869 GCN5-related N-acetyltransferase YP_001993814.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_001993815.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bja:blr7462 two-component hybrid sensor and regulator YP_001993816.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_3137 two component transcriptional regulator, winged helix family YP_001993817.1 PFAM: regulatory protein MarR; KEGG: bbt:BBta_1738 transcriptional regulator, MarR family YP_001993818.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001993819.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_001993820.1 PFAM: Class I peptide chain release factor; KEGG: bja:blr7486 hypothetical protein YP_001993821.1 PFAM: peptidase M16 domain protein; KEGG: bra:BRADO6071 Zn-dependent protease YP_001993822.1 PFAM: peptidase M16 domain protein; KEGG: bja:blr7484 hypothetical zinc protease YP_001993823.1 KEGG: bbt:BBta_1714 exported protein of unknown function YP_001993824.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_001993825.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme YP_001993826.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN5256 acetyltransferase YP_001993827.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; riboflavin kinase; KEGG: bja:blr7480 riboflavin biosynthesis bifunctional protein YP_001993828.1 PFAM: ribonuclease T2; KEGG: nha:Nham_3150 ribonuclease T2 YP_001993829.1 KEGG: bbt:BBta_1733 exported protein of unknown function YP_001993830.1 KEGG: nha:Nham_3152 hypothetical protein YP_001993831.1 KEGG: bra:BRADO6048 conserved hypothetical protein; signal peptide YP_001993832.1 KEGG: bja:bll2461 hypothetical protein YP_001993833.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbt:BBta_2266 outer membrane hemin/siderophore receptor protein YP_001993834.1 KEGG: nwi:Nwi_2630 hypothetical protein YP_001993835.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bxe:Bxe_B0900 TonB-dependent siderophore receptor YP_001993836.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_3258 GCN5-related N-acetyltransferase YP_001993837.1 PFAM: MscS Mechanosensitive ion channel; KEGG: fjo:Fjoh_3200 MscS mechanosensitive ion channel YP_001993838.1 PFAM: NUDIX hydrolase; KEGG: nha:Nham_3259 NUDIX hydrolase YP_001993839.1 PFAM: metallophosphoesterase; KEGG: bja:bll2457 hypothetical protein YP_001993840.1 KEGG: nha:Nham_1099 hypothetical protein YP_001993841.1 KEGG: nha:Nham_1098 hypothetical protein YP_001993842.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates YP_001993843.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: nha:Nham_1096 transcriptional regulator, XRE family YP_001993844.1 KEGG: azc:AZC_3857 hypothetical protein YP_001993845.1 TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: nha:Nham_1092 lytic murein transglycosylase YP_001993846.1 PFAM: extracellular ligand-binding receptor; KEGG: bja:bll0887 ABC transporter substrate-binding protein YP_001993847.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_7683 branched-chain amino acid ABC transporter ATP-binding protein YP_001993848.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll0885 ABC transporter ATP-binding protein YP_001993849.1 PFAM: inner-membrane translocator; KEGG: bbt:BBta_7685 branched-chain amino acid ABC transporter permease protein YP_001993850.1 PFAM: inner-membrane translocator; KEGG: bra:BRADO0496 branched-chain amino acid ABC transporter permease protein YP_001993852.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bra:BRADO1926 N-ethylmaleimide reductase, FMN-linked YP_001993853.1 KEGG: bbt:BBta_2227 periplasmic binding ABC transporter protein, sugar binding precursor YP_001993854.1 KEGG: bja:blr2441 hypothetical protein YP_001993855.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:blr2440 ABC transporter permease protein YP_001993856.1 PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_2224 ABC transporter permease protein YP_001993857.1 PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: bra:BRADO1910 ATP-binding protein of sugar ABC transporter YP_001993858.1 PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: bja:blr2437 ABC transporter ATP-binding protein YP_001993859.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_001993860.1 PFAM: regulatory protein DeoR; KEGG: bja:blr2433 transcriptional regulatory protein YP_001993863.1 KEGG: bja:blr2425 hypothetical protein YP_001993864.1 PFAM: regulatory protein TetR; KEGG: nha:Nham_1083 transcriptional regulator, TetR family YP_001993865.1 PFAM: acriflavin resistance protein; KEGG: bja:blr2423 cation efflux system protein YP_001993866.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO1901 component of multidrug efflux system; signal peptide YP_001993867.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bja:blr2409 hypothetical protein YP_001993868.1 KEGG: bbt:BBta_4427 sensor histidine kinase with PAS/PAC and response regulator receiver domains; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein YP_001993869.1 PFAM: CsbD family protein; KEGG: bbt:BBta_2201 hypothetical protein YP_001993870.1 KEGG: bra:BRADO1881 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_001993871.1 PFAM: SlyX family protein; KEGG: bja:bsl2402 hypothetical protein YP_001993872.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cak:Caul_0814 AMP-dependent synthetase and ligase YP_001993873.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: bja:bll2244 probable cAMP-regulatory protein YP_001993874.1 KEGG: bra:BRADO6425 hypothetical protein YP_001993875.1 PFAM: beta-lactamase domain protein; KEGG: bja:blr7890 beta-lactamase YP_001993876.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:blr7891 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase YP_001993877.1 PFAM: glutathione S-transferase domain; KEGG: bra:BRADO6428 glutathione S-transferase YP_001993878.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: bbt:BBta_1204 methylated-DNA-protein-cystein methyltransferase YP_001993879.1 KEGG: spq:SPAB_04619 hypothetical protein YP_001993880.1 PFAM: PepSY-associated TM helix domain protein; KEGG: bja:bll7967 similar to iron-uptake factor YP_001993881.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbt:BBta_6052 TonB-dependent siderophore receptor YP_001993882.1 KEGG: bja:blr1408 hypothetical protein YP_001993883.1 PFAM: peptidase M23; KEGG: nha:Nham_0660 peptidase M23B YP_001993884.1 PFAM: NHL repeat containing protein; KEGG: bja:bll1406 hypothetical protein YP_001993885.1 KEGG: bbt:BBta_1195 chaperone; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; Clp domain protein; ATPase AAA; ATPase AAA-2 domain protein; SMART: ATPase AAA YP_001993886.1 PFAM: MOSC domain containing protein; KEGG: nha:Nham_0680 hypothetical protein YP_001993887.1 KEGG: bbt:BBta_1193 exported protein of unknown function YP_001993888.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; methyltransferase type 11; methyltransferase type 12; KEGG: nwi:Nwi_0586 methionine biosynthesis MetW YP_001993889.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_001993890.1 PFAM: Chorismate mutase; KEGG: nha:Nham_0675 hypothetical protein YP_001993891.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001993892.1 dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate YP_001993893.1 PFAM: protein of unknown function DUF497; KEGG: mrd:Mrad2831_1006 hypothetical protein YP_001993894.1 KEGG: mrd:Mrad2831_1007 hypothetical protein YP_001993895.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: nha:Nham_0762 Mg2+ transporter protein, CorA-like YP_001993896.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: nwi:Nwi_0619 ErfK/YbiS/YcfS/YnhG YP_001993897.1 PFAM: Extensin family protein; KEGG: bra:BRADO2141 hypothetical protein YP_001993898.1 activates fatty acids by binding to coenzyme A YP_001993899.1 PFAM: protein of unknown function DUF559; KEGG: nwi:Nwi_2534 protein of unknown function DUF559 YP_001993900.1 KEGG: bja:bll2618 hypothetical protein YP_001993901.1 KEGG: bbt:BBta_6131 exported protein of unknown function YP_001993902.1 KEGG: azc:AZC_2428 hypothetical protein YP_001993903.1 KEGG: pla:Plav_0952 hypothetical protein YP_001993904.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001993905.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bra:BRADO2557 methyl-accepting chemotaxis receptor/sensory transducer YP_001993906.1 KEGG: bja:bll5850 hypothetical protein YP_001993907.1 KEGG: bja:bll5849 hypothetical protein YP_001993908.1 PFAM: pyridoxal-dependent decarboxylase; KEGG: nha:Nham_1334 pyridoxal-dependent decarboxylase YP_001993909.1 PFAM: metallophosphoesterase; KEGG: nha:Nham_3527 hypothetical protein YP_001993910.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: bra:BRADO1138 antifreeze protein, type I : 5-formyltetrahydrofolate cyclo-ligase YP_001993911.1 KEGG: bra:BRADO4648 hypothetical protein YP_001993913.1 KEGG: mxa:MXAN_4460 valyl-tRNA synthetase YP_001993914.1 PFAM: rhodanese domain protein; KEGG: bra:BRADO5552 rhodanese-related sulfurtransferase YP_001993915.1 PFAM: isoprenylcysteine carboxyl methyltransferase; KEGG: sme:SMc01259 hypothetical protein YP_001993916.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xau:Xaut_1514 flavocytochrome C sulphide dehydrogenase flavin-binding YP_001993917.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome C sulphide dehydrogenase flavin-binding; KEGG: xau:Xaut_1514 flavocytochrome C sulphide dehydrogenase flavin-binding YP_001993918.1 KEGG: sil:SPO1000 diheme cytochrome C SoxE YP_001993919.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dar:Daro_3126 YeeE/YedE YP_001993920.1 KEGG: bra:BRADO3185 sulfite oxidase cytochrome subunit (SoxD) YP_001993921.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: xau:Xaut_1518 oxidoreductase molybdopterin binding YP_001993922.1 PFAM: 5'-nucleotidase; KEGG: xau:Xaut_1519 5'-nucleotidase domain protein YP_001993923.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: xau:Xaut_1520 sulphur oxidation protein SoxZ YP_001993924.1 with SoxZ catalyzes the oxidation of sulfur compounds YP_001993925.1 KEGG: xau:Xaut_1522 hypothetical protein YP_001993926.1 KEGG: xau:Xaut_1523 hypothetical protein YP_001993927.1 PFAM: protein of unknown function DUF336; KEGG: nha:Nham_3668 protein of unknown function DUF336 YP_001993928.1 KEGG: bja:blr3510 probable thioredoxin YP_001993929.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: bcs:BCAN_B0584 cytochrome C biogenesis protein transmembrane region YP_001993930.1 KEGG: xau:Xaut_1526 hypothetical protein YP_001993931.1 PFAM: regulatory protein ArsR; KEGG: xau:Xaut_1527 regulatory protein ArsR YP_001993932.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: xau:Xaut_1528 protein of unknown function DUF395 YeeE/YedE YP_001993933.1 PFAM: Domain of unknown function DUF1791; KEGG: bra:BRADO1133 conserved hypothetical protein; signal peptide; YchN-like YP_001993934.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: nha:Nham_2696 protein of unknown function DUF395, YeeE/YedE YP_001993935.1 KEGG: bbt:BBta_6241 hypothetical protein YP_001993936.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: bja:blr4112 probable cation efflux system protein YP_001993937.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: dar:Daro_2800 secretion protein HlyD YP_001993938.1 PFAM: chemotaxis sensory transducer; KEGG: bja:blr2976 methyl accepting chemotaxis protein YP_001993939.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: bja:blr2975 hypothetical protein YP_001993940.1 PFAM: chemotaxis sensory transducer; KEGG: bja:blr2976 methyl accepting chemotaxis protein YP_001993941.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; KEGG: rru:Rru_A2378 transcriptional regulator with PAS/PAC domain YP_001993942.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: bbt:BBta_2321 adenine glycosylase MutY YP_001993943.1 PFAM: protein of unknown function DUF1159; KEGG: nha:Nham_3228 protein of unknown function DUF1159 YP_001993944.1 PFAM: DSBA oxidoreductase; KEGG: bra:BRADO2001 conserved hypothetical protein; signal peptide; twin-arginine translocation signal domain protein YP_001993947.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: bja:bll2496 chromosome segregation protein YP_001993948.1 PFAM: ribosomal small subunit Rsm22; KEGG: nha:Nham_3231 methyltransferase type 12 YP_001993949.1 PFAM: LemA family protein; KEGG: nha:Nham_3233 LemA YP_001993950.1 PFAM: peptidase M48 Ste24p; peptidase M56 BlaR1; KEGG: bbt:BBta_2314 protease HtpX YP_001993951.1 KEGG: bja:bll2492 hypothetical protein YP_001993952.1 KEGG: nha:Nham_3236 hypothetical protein YP_001993953.1 PFAM: transposase IS4 family protein; KEGG: atc:AGR_L_863gl hypothetical protein YP_001993954.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001993955.1 trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II YP_001993956.1 KEGG: bbt:BBta_1659 hypothetical protein YP_001993957.1 PFAM: PhnA protein; KEGG: sme:SMc00099 probable alkylphosphonate uptake protein YP_001993958.1 PFAM: OmpW family protein; KEGG: bbt:BBta_0946 outer membrane protein precursor of unknown function YP_001993959.1 KEGG: bja:bsr1310 hypothetical protein YP_001993960.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bbt:BBta_0943 propionate--CoA ligase YP_001993961.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bbt:BBta_0942 hypothetical protein YP_001993962.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr1304 dehydrogenase YP_001993963.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: azc:AZC_3721 elongator protein YP_001993964.1 PFAM: Domain of unknown function DUF1850; KEGG: bja:blr1303 hypothetical protein YP_001993965.1 TIGRFAM: TRAP transporter 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bra:BRADO6597 transporter TrapT family, fused DctQ-M subunits, C4-dicarboxylate transport YP_001993966.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bja:blr1301 immunogenic protein precursor YP_001993967.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_2491 major facilitator superfamily MFS_1 YP_001993968.1 PFAM: response regulator receiver; KEGG: rsq:Rsph17025_3337 hypothetical protein YP_001993969.1 PFAM: HWE histidine kinase; KEGG: rsq:Rsph17025_3338 hypothetical protein YP_001993970.1 KEGG: bay:RBAM_002930 PhoD YP_001993971.1 PFAM: conserved hypothetical protein; KEGG: reh:H16_B0202 probable extra-cytoplasmic solute receptor YP_001993972.1 PFAM: EAL domain protein; KEGG: bja:blr0402 two-component response regulator YP_001993973.1 KEGG: bbt:BBta_0936 exported protein of unknown function YP_001993974.1 KEGG: bja:bll1299 hypothetical protein YP_001993975.1 KEGG: nwi:Nwi_0278 hypothetical protein YP_001993976.1 PFAM: NUDIX hydrolase; KEGG: bja:blr1297 hypothetical protein YP_001993977.1 PFAM: thioesterase superfamily protein; KEGG: bja:bll1296 hypothetical protein YP_001993978.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mrd:Mrad2831_3556 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_001993979.1 PFAM: response regulator receiver; KEGG: bbt:BBta_3939 two-component response regulatory protein, response regulator receiver YP_001993980.1 KEGG: mrd:Mrad2831_6503 hypothetical protein YP_001993981.1 PFAM: protein of unknown function DUF329; KEGG: nwi:Nwi_0276 zinc-binding protein YP_001993982.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_001993983.1 KEGG: bxe:Bxe_A2255 predicted ATPase, RecF-like YP_001993984.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bra:BRADO6635 arsenate reductase (ArsC-like) YP_001993985.1 PFAM: conserved hypothetical protein; KEGG: bja:blr1257 hypothetical protein YP_001993986.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_001993987.1 KEGG: bra:BRADO6638 hypothetical protein YP_001993988.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001993989.1 KEGG: bbt:BBta_7859 exported protein of unknown function YP_001993990.1 KEGG: bbt:BBta_4382 exported protein of unknown function YP_001993991.1 PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: bbt:BBta_0894 nucleotide-disulphide oxidoreductase YP_001993992.1 KEGG: bra:BRADO6641 hypothetical protein YP_001993993.1 KEGG: rme:Rmet_1763 protein of unknown function DUF1486 YP_001993994.1 KEGG: nha:Nham_3021 hypothetical protein YP_001993995.1 KEGG: nha:Nham_3782 hypothetical protein YP_001993996.1 KEGG: bja:bll6790 4-hydroxybutyrate CoA transferase YP_001993997.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:bll6791 acyl-CoA dehydrogenase YP_001993998.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:bll6792 transmembrane protein YP_001993999.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bja:bll6793 hypothetical protein YP_001994000.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:bll6794 hypothetical protein YP_001994001.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr6795 racemase YP_001994002.1 PFAM: MaoC domain protein dehydratase; KEGG: bja:blr6796 probable acyl dehydratase YP_001994003.1 PFAM: HpcH/HpaI aldolase; KEGG: bja:blr6797 citrate lyase YP_001994004.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bja:blr6798 transcriptional regulatory protein YP_001994005.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate YP_001994006.1 KEGG: reu:Reut_B4967 ketopantoate reductase ApbA/PanE; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein YP_001994007.1 PFAM: nuclease (SNase domain protein); KEGG: bbt:BBta_2752 exported protein of unknown function YP_001994008.1 PFAM: thioesterase superfamily protein; KEGG: bja:blr7284 hypothetical protein YP_001994009.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bra:BRADO2426 diguanylate cyclase (GGDEF) YP_001994010.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: pna:Pnap_3569 acetate kinase YP_001994011.1 PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: cak:Caul_1955 phosphate acetyltransferase YP_001994012.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_001994013.1 PFAM: protein of unknown function DUF344; KEGG: rfr:Rfer_4046 protein of unknown function DUF344 YP_001994014.1 KEGG: bbt:BBta_5233 membrane protein of unknown function YP_001994015.1 KEGG: nha:Nham_0272 hypothetical protein YP_001994016.1 KEGG: bja:blr2591 serine protease DO-like protease; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001994017.1 KEGG: nha:Nham_1775 hypothetical protein YP_001994018.1 KEGG: nha:Nham_1414 hypothetical protein YP_001994019.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO1747 ABC transporter (ATP-binding protein) YP_001994020.1 PFAM: inner-membrane translocator; KEGG: bja:blr6156 ABC transporter permease protein YP_001994021.1 PFAM: inner-membrane translocator; KEGG: bja:blr6157 ABC transporter permease protein YP_001994022.1 PFAM: basic membrane lipoprotein; KEGG: bbt:BBta_2057 ABC transporter (substrate-binding protein) YP_001994023.1 SMART: PDZ/DHR/GLGF domain protein; KEGG: nha:Nham_3491 PDZ/DHR/GLGF YP_001994024.1 PFAM: conserved hypothetical protein; KEGG: bja:blr7786 hypothetical protein YP_001994025.1 KEGG: bja:blr4975 hypothetical protein YP_001994026.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mrd:Mrad2831_0040 UDP-glucose 4-epimerase YP_001994027.1 KEGG: bja:blr7577 UDP-hexose transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF YP_001994028.1 PFAM: glycoside hydrolase family 5; KEGG: rca:Rcas_0182 glycoside hydrolase family 5 YP_001994029.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: bja:blr3362 hypothetical protein YP_001994030.1 PFAM: glycosyl transferase group 1; KEGG: bja:bll3361 probable glycosyl transferase YP_001994031.1 KEGG: bja:bll3360 hypothetical protein YP_001994032.1 KEGG: bcs:BCAN_A1201 hypothetical protein YP_001994033.1 KEGG: bja:bll3363 hypothetical protein YP_001994034.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_001994035.1 KEGG: bja:bll0245 O-acetylhomoserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001994036.1 activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization YP_001994037.1 PFAM: aminotransferase class IV; KEGG: bja:bll0229 aminotransferase YP_001994038.1 KEGG: bja:bll0956 hypothetical protein YP_001994039.1 KEGG: bra:BRADO6292 conserved hypothetical protein; acyl carrier domain YP_001994040.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll7783 hypothetical protein YP_001994041.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll7782 3-oxoacyl-[acyl-carrier-protein] reductase YP_001994042.1 PFAM: tRNA synthetase class II (G H P and S); KEGG: bja:bll0957 hypothetical protein YP_001994043.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bra:BRADO6906 acyl-CoA dehydrogenase YP_001994044.1 KEGG: bja:bsr0959 hypothetical protein YP_001994045.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: bra:BRADO0883 conserved hypothetical protein; RmlC-like cupin family protein YP_001994046.1 KEGG: sit:TM1040_2053 3-dehydroquinate dehydratase YP_001994047.1 KEGG: bra:BRADO5383 ferredoxin protein, FixX YP_001994048.1 PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: bbt:BBta_5870 FixC protein YP_001994049.1 PFAM: electron transfer flavoprotein alpha/beta-subunit ; electron transfer flavoprotein alpha subunit; KEGG: bra:BRADO5385 protein FixB; electron transfer flavoprotein alpha chain YP_001994050.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: bbt:BBta_5872 protein FixA YP_001994051.1 associates with NifD and may protect the nitrogenase Fe-Mo protein from oxidative damage YP_001994052.1 TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: bra:BRADO5390 homocitrate synthase YP_001994053.1 TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gdi:GDI0448 cysteine desulfurase (nitrogenase metalloclusters biosynthesis protein NifS) YP_001994054.1 TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: gdi:GDI0447 nitrogen fixation protein NifU YP_001994055.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: mlo:mll5942 hypothetical protein YP_001994056.1 PFAM: NifQ family protein; KEGG: bra:BRADO5393 nitrogen fixation protein NifQ YP_001994057.1 TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azc:AZC_1034 ferredoxin YP_001994058.1 PFAM: protein of unknown function DUF683; KEGG: azc:AZC_3451 hypothetical 7.7 kDa protein in FixX 3'region YP_001994059.1 TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269; KEGG: mca:MCA0236 hypothetical protein YP_001994060.1 TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: azc:AZC_1036 nitrogenase molybdenum-iron NifX protein YP_001994061.1 functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe YP_001994062.1 functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe YP_001994063.1 KEGG: azc:AZC_1039 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1 YP_001994064.1 KEGG: mca:MCA0230 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_001994065.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis YP_001994066.1 KEGG: mca:MCA0218 hypothetical protein YP_001994067.1 KEGG: azc:AZC_3422 hypothetical protein YP_001994068.1 TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: bxe:Bxe_B1454 nitrogen fixation protein YP_001994069.1 PFAM: NifZ family protein; KEGG: xau:Xaut_0117 NifZ family protein YP_001994070.1 PFAM: NifZ family protein; KEGG: azc:AZC_3419 iron-sulfur cofactor synthesis protein YP_001994071.1 PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: azc:AZC_3418 hypothetical protein YP_001994072.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: xau:Xaut_0114 hypothetical protein YP_001994073.1 PFAM: HesB/YadR/YfhF-family protein; KEGG: mca:MCA0206 HesB/YadR/YfhF family protein YP_001994074.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bbt:BBta_5903 ferredoxin-like (in nif region) YP_001994075.1 TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; radical SAM domain protein; KEGG: mca:MCA0204 nitrogenase cofactor biosynthesis protein NifB YP_001994076.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gdi:GDI0431 ferredoxin-like YP_001994077.1 KEGG: bbt:BBta_5933 Mo/Fe nitrogenase specific transcriptional regulator, NifA; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase AAA; SMART: ATPase AAA YP_001994078.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_5935 FixR protein YP_001994079.1 KEGG: bbt:BBta_5936 hypothetical protein YP_001994080.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: bja:blr6523 iron transport protein YP_001994081.1 PFAM: FeoA family protein; KEGG: bra:BRADO5587 FeoA family protein YP_001994083.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_2902 sensory transducer protein YP_001994084.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:blr2931 methyl-accepting chemotaxis protein YP_001994086.1 catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation YP_001994087.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_001994088.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_001994089.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: bbt:BBta_6400 phosphoribulokinase YP_001994090.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_001994091.1 PFAM: alpha/beta hydrolase fold; KEGG: sth:STH2045 esterase YP_001994092.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pde:Pden_4604 regulatory proteins, IclR YP_001994093.1 PFAM: extracellular solute-binding protein family 1; KEGG: pde:Pden_4603 ABC transporter binding protein component YP_001994094.1 PFAM: ABC transporter inner membrane protein; KEGG: pde:Pden_4602 ABC transporter inner membrane protein YP_001994095.1 KEGG: pde:Pden_4601 ABC transporter; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; Transport-associated OB domain protein; SMART: ATPase AAA YP_001994096.1 PFAM: coenzyme A transferase; KEGG: pde:Pden_4600 glutaconate CoA-transferase, subunit A YP_001994097.1 PFAM: coenzyme A transferase; KEGG: pde:Pden_4599 CoA transferase, subunit B YP_001994098.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: carboxymuconolactone decarboxylase; KEGG: bra:BRADO4672 conserved hypothetical protein; peroxidase related protein YP_001994099.1 PFAM: class II aldolase/adducin family protein; KEGG: bja:bll6170 L-fuculose phosphate aldolase YP_001994100.1 PFAM: PfkB domain protein; KEGG: rsp:RSP_2370 sugar kinase YP_001994101.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: smd:Smed_3033 short-chain dehydrogenase/reductase SDR YP_001994102.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: nha:Nham_3502 alcohol dehydrogenase GroES-like YP_001994103.1 PFAM: GCN5-related N-acetyltransferase; KEGG: scl:sce5163 acetyltransferase YP_001994104.1 KEGG: nha:Nham_3615 alpha,alpha-trehalose-phosphate synthase; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20 YP_001994105.1 KEGG: bja:bll0323 probable trehalose-phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase YP_001994106.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:bll0324 sugar transport protein YP_001994107.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:bll0327 methyl-accepting chemotaxis protein YP_001994108.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; cupin; KEGG: rru:Rru_A1462 transcriptional regulator, AraC family YP_001994109.1 KEGG: rru:Rru_A1461 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain YP_001994110.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bra:BRADO6957 carbon-monoxide dehydrogenase small subunit, CoxS-like protein YP_001994111.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bbt:BBta_0573 carbon-monoxide dehydrogenase large subunit, CoxL-like protein YP_001994112.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: bra:BRADO6959 carbon monoxide dehydrogenase medium subunit, CoxM-like protein YP_001994113.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr0338 alpha-methylacyl-CoA racemase YP_001994114.1 KEGG: bbt:BBta_0567 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969 YP_001994115.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase domain; KEGG: nha:Nham_0920 maleylacetoacetate isomerase YP_001994116.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine YP_001994117.1 PFAM: beta-lactamase domain protein; KEGG: bra:BRADO6967 metallo-beta-lactamase family protein YP_001994118.1 KEGG: nha:Nham_0923 hypothetical protein YP_001994119.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: nha:Nham_0924 hypothetical protein YP_001994120.1 PFAM: regulatory protein MarR; KEGG: bra:BRADO6970 transcriptional regulator, MarR family YP_001994121.1 PFAM: TPR repeat-containing protein; peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nwi:Nwi_3029 peptidase C14 YP_001994122.1 PFAM: OmpA/MotB domain protein; KEGG: bbt:BBta_0555 hypothetical protein YP_001994123.1 KEGG: nha:Nham_3611 secretion protein HlyD YP_001994124.1 PFAM: acriflavin resistance protein; KEGG: nha:Nham_3610 acriflavin resistance protein YP_001994125.1 PFAM: AsmA family protein; KEGG: bja:blr0358 hypothetical protein YP_001994126.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: bbt:BBta_0549 exported protein of unknown function YP_001994127.1 KEGG: ppu:PP_1576 immunity protein YP_001994128.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mag:amb3991 methyl-accepting chemotaxis protein YP_001994129.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine YP_001994130.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: nha:Nham_0202 extracellular solute-binding protein, family 3 YP_001994131.1 PFAM: glycosyl transferase family 2; KEGG: azc:AZC_0377 glycosyltransferase YP_001994132.1 PFAM: electron transport protein SCO1/SenC; KEGG: bbt:BBta_0787 electron transport protein YP_001994133.1 KEGG: bja:blr1130 hypothetical protein YP_001994135.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_1388 methyl-accepting chemotaxis protein YP_001994136.1 KEGG: bja:bll4535 hypothetical protein YP_001994137.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bpa:BPP0371 NADH:flavin oxidoreductase / NADH oxidase family protein YP_001994138.1 PFAM: conserved hypothetical protein; KEGG: azc:AZC_3350 hypothetical protein YP_001994139.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bra:BRADO2335 transcriptional regulator of protochatechuate degradation (LysR family) YP_001994140.1 PFAM: protein of unknown function DUF453; KEGG: azo:azo2544 hypothetical protein YP_001994141.1 PFAM: amidohydrolase 2; KEGG: bra:BRADO2337 4-oxalomesaconate hydratase YP_001994142.1 TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: mag:amb0252 hypothetical protein YP_001994143.1 PFAM: phosphogluconate dehydrogenase, NAD-binding, -like; KEGG: bra:BRADO2339 dehydrogenase, with NAD binding domain YP_001994144.1 PFAM: amidohydrolase 2; KEGG: bbt:BBta_2700 2-pyrone-4,6-dicarboxylic acid hydrolase YP_001994145.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway YP_001994146.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway YP_001994147.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bra:BRADO2343 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase YP_001994148.1 KEGG: nha:Nham_3738 hypothetical protein YP_001994149.1 TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: bja:blr1323 phosphoribosyl-ATP pyrophosphohydrolase YP_001994150.1 KEGG: nha:Nham_3739 DedA YP_001994151.1 KEGG: bbt:BBta_0959 exported protein of unknown function YP_001994152.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: bbt:BBta_0960 dioxygenase YP_001994153.1 KEGG: bja:blr1328 hypothetical protein YP_001994154.1 KEGG: bbt:BBta_0975 hypothetical protein YP_001994155.1 KEGG: bbt:BBta_0976 exported protein of unknown function YP_001994156.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nar:Saro_3797 transcriptional regulator, SARP family YP_001994157.1 KEGG: mar:MAE_00590 peptidase PatA homolog YP_001994158.1 KEGG: bbt:BBta_2076 hypothetical protein YP_001994159.1 KEGG: bja:blr6953 molybdenum ABC transporter ATP-binding protein; TIGRFAM: molybdate ABC transporter ATPase subunit; PFAM: ABC transporter; TOBE domain protein; SMART: ATPase AAA YP_001994160.1 TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_2079 molybdenum ABC transporter (permease protein) YP_001994161.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bja:blr6951 molybdenum ABC transporter molybdate-binding protein YP_001994162.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: nha:Nham_2953 transcriptional regulator, ModE family YP_001994163.1 PFAM: TOBE domain protein; KEGG: mlo:msr1466 molybdo-pterin binding protein YP_001994164.1 KEGG: nha:Nham_3410 hypothetical protein YP_001994165.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rfr:Rfer_3209 pyruvate flavodoxin/ferredoxin oxidoreductase-like YP_001994166.1 undetermined function YP_001994167.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_001994168.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001994169.1 KEGG: bja:blr8135 hypothetical protein YP_001994170.1 KEGG: bja:bll8136 hypothetical protein YP_001994171.1 KEGG: bbt:BBta_7363 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_001994172.1 KEGG: bja:blr8140 hypothetical protein YP_001994173.1 TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: nwi:Nwi_0352 arginase YP_001994174.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: cak:Caul_4355 transposase IS116/IS110/IS902 family protein YP_001994175.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO3397 ABC transporter ATP-binding protein with duplicated ATPase domains YP_001994176.1 KEGG: nha:Nham_0672 hypothetical protein YP_001994177.1 PFAM: ChaC family protein; AIG2 family protein; KEGG: bbt:BBta_1180 cation transport protein ChaC-related YP_001994178.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: bbt:BBta_1179 1-acylglycerol-3-phosphate O-acyltransferase (PlsC) YP_001994179.1 PFAM: protein of unknown function DUF218; KEGG: nha:Nham_0669 protein of unknown function DUF218 YP_001994180.1 PFAM: protein of unknown function DUF214; KEGG: bja:blr1391 cell division protein YP_001994181.1 KEGG: nha:Nham_0667 ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter; SMART: ATPase AAA YP_001994182.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: nha:Nham_0666 zinc finger/thioredoxin YP_001994183.1 PFAM: response regulator receiver; KEGG: bja:bll1388 two-component response regulator YP_001994184.1 KEGG: nha:Nham_0664 hypothetical protein YP_001994185.1 PFAM: carboxymuconolactone decarboxylase; KEGG: bja:bll1385 gamma carboxymuconolactone decarboxylase protein YP_001994186.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bbt:BBta_1147 diaminopimelate decarboxylase YP_001994187.1 KEGG: nwi:Nwi_0714 hypothetical protein YP_001994188.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_001994189.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bbt:BBta_1144 thiol disulfide interchange protein TlpA (cytochrome C biogenesis protein TlpA) YP_001994190.1 KEGG: bbt:BBta_1143 exported protein of unknown function YP_001994191.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: mlo:mll7814 quinone reductase YP_001994192.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mlo:mlr7815 transcriptional regulator YP_001994193.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_001994194.1 PFAM: electron transfer flavoprotein alpha/beta-subunit ; electron transfer flavoprotein alpha subunit; KEGG: bja:blr1378 electron transfer flavoprotein large subunit YP_001994195.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: bja:blr1377 electron transfer flavoprotein beta subunit YP_001994196.1 TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: bja:blr1376 hypothetical protein YP_001994197.1 KEGG: bja:blr1375 hypothetical protein YP_001994198.1 PFAM: ribonuclease BN; KEGG: bbt:BBta_1137 ribonuclease BN-like family transmembrane protein YP_001994199.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nha:Nham_3485 histidine kinase YP_001994200.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_001994201.1 PFAM: HhH-GPD family protein; KEGG: bja:bll1371 DNA-3-methyladenine glycosidase II YP_001994202.1 Inhibits transcription at high concentrations of nickel YP_001994203.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bra:BRADO5677 outer membrane receptor; iron transport (COG1629) YP_001994204.1 PFAM: PRC-barrel domain protein; KEGG: bra:BRADO3942 conserved hypothetical protein with photosynthetic reaction centre domain (PCR-barrel) YP_001994205.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bra:BRADO0511 glycosyl hydrolase, family 13; alpha-glucosidase YP_001994207.1 KEGG: yli:YALI0E34089g hypothetical protein YP_001994209.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: bja:bll1113 methylated-DNA--protein-cysteine methyltransferase YP_001994210.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: bbt:BBta_0771 cation-driven multidrug efflux pump YP_001994211.1 PFAM: metallophosphoesterase; KEGG: aba:Acid345_2905 metallophosphoesterase YP_001994212.1 Catalyzes the deamination of dCTP to form dUTP YP_001994213.1 catalyzes the conversion of O-succinylhomoserine and sulfide to homocysteine; second step in methionine biosynthesis YP_001994214.1 PFAM: lipolytic protein G-D-S-L family; KEGG: bja:blr1104 hypothetical protein YP_001994215.1 KEGG: nha:Nham_0221 hypothetical protein YP_001994216.1 KEGG: bja:blr1102 hypothetical protein YP_001994217.1 protein associated with Co2+ and Mg2+ efflux YP_001994218.1 KEGG: bja:bll2703 hypothetical protein YP_001994219.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_001994220.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_001994221.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_001994222.1 PFAM: GcrA cell cycle regulator; KEGG: nha:Nham_0641 GcrA cell cycle regulator YP_001994223.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bra:BRADO1679 response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) YP_001994224.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: bra:BRADO1678 transcriptional repressor for high-affinity phosphate uptake YP_001994225.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_001994226.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO1676 high-affinity phosphate transport protein (ABC superfamily, membrane) YP_001994227.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO1675 high-affinity phosphate transport protein (ABC superfamily, membrane) YP_001994228.1 TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bbt:BBta_1986 high-affinity phosphate transport protein (ABC superfamily, peri_bind) YP_001994229.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: bja:blr1090 phosphate regulon, two-component sensor histidine kinase YP_001994230.1 KEGG: bra:BRADO6783 hypothetical protein YP_001994231.1 KEGG: nha:Nham_0632 hypothetical protein YP_001994232.1 PFAM: OmpA/MotB domain protein; KEGG: bja:blr1084 hypothetical protein YP_001994233.1 PFAM: polysaccharide deacetylase; KEGG: bbt:BBta_0752 polysaccharide deacetylase YP_001994234.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_0751 short-chain dehydrogenase/reductase (SDR) YP_001994235.1 consists of N-terminal helix-turn-helix domain and C-terminal shikimate kinase-like domain which may bind benzoyl-CoA; controls inducible expression of the bzd catabolic operon that is involved in the anaerobic catabolism of benzoate YP_001994236.1 PFAM: extracellular solute-binding protein family 1; KEGG: nha:Nham_3686 extracellular solute-binding protein, family 1 YP_001994237.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: bja:bll1031 similar to histidine kinase YP_001994238.1 KEGG: nha:Nham_3684 response regulator receiver sensor signal transduction histidine kinase; TIGRFAM: phage head-tail adaptor; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_001994239.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_3683 two component transcriptional regulator, winged helix family YP_001994240.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001994241.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: bbt:BBta_0708 cytochrome bd ubiquinol oxidase, subunit I (CydA, QxtA) YP_001994242.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: bbt:BBta_0707 cytochrome bd ubiquinol oxidase, subunit II (CydB, QxtB) YP_001994244.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bra:BRADO6837 conserved hypothetical protein; signal peptide; ErfK/YbiS/YcfS/YnhG YP_001994245.1 SMART: extracellular solute-binding protein family 3; KEGG: bra:BRADO6838 general L-amino acid-binding periplasmic protein YP_001994246.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_0703 acyl-CoA dehydrogenase YP_001994247.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bbt:BBta_0702 acyl-CoA dehydrogenase YP_001994248.1 PFAM: carboxymuconolactone decarboxylase; KEGG: bbt:BBta_0701 hypothetical protein YP_001994249.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr1018 hypothetical protein YP_001994250.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr1017 MFS permease YP_001994251.1 PFAM: protein of unknown function DUF938; KEGG: bbt:BBta_0698 hypothetical protein YP_001994252.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_2621 TonB-dependent receptor, plug YP_001994253.1 KEGG: nwi:Nwi_2376 hypothetical protein YP_001994255.1 KEGG: bra:BRADO0975 ABC-type branched-chain amino acid transporter periplasmic binding protein YP_001994256.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr1003 hypothetical protein YP_001994257.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_0686 ABC transporter ATP-binding protein YP_001994258.1 PFAM: protein of unknown function DUF214; KEGG: bja:bll1001 probable ABC transporter permease protein YP_001994259.1 KEGG: nha:Nham_0344 hypothetical protein YP_001994260.1 PFAM: membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); KEGG: bja:bll0998 hypothetical protein YP_001994261.1 KEGG: bja:blr0998 probable periplasmic substrate binding protein YP_001994262.1 KEGG: bja:bll1872 hypothetical protein YP_001994263.1 molecular chaperone YP_001994264.1 PFAM: ATP-binding region ATPase domain protein; KEGG: nha:Nham_1886 periplasmic sensor signal transduction histidine kinase YP_001994265.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_1885 two component transcriptional regulator, winged helix family YP_001994266.1 PFAM: propeptide PepSY amd peptidase M4; KEGG: nha:Nham_1884 propeptide, PepSY amd peptidase M4 YP_001994268.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway YP_001994269.1 Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate YP_001994270.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: bja:bll0995 maleylacetate reductase YP_001994271.1 activates fatty acids by binding to coenzyme A YP_001994272.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: pla:Plav_3012 ethyl tert-butyl ether degradation EthD YP_001994273.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: smd:Smed_4100 transcriptional regulator, MerR family YP_001994274.1 KEGG: bbt:BBta_6924 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases YP_001994275.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: azc:AZC_4413 hypothetical protein YP_001994276.1 KEGG: bbt:BBta_7859 exported protein of unknown function YP_001994277.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll0843 crotonobetaine/carnitine-CoA ligase YP_001994278.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: bja:blr0842 hypothetical protein YP_001994279.1 KEGG: nha:Nham_4036 hypothetical protein YP_001994280.1 PFAM: dienelactone hydrolase; KEGG: bbt:BBta_7870 carboxymethylenebutenolidase YP_001994281.1 PFAM: polysaccharide export protein; KEGG: bja:blr0835 probable polysaccharide export protein YP_001994282.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_001994283.1 KEGG: bja:blr0833 hypothetical protein YP_001994284.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase