-- dump date 20140620_032845 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 395960000001 SEQ_END SEQ_END NC_011004.1 5744041 5744041 DR NC_011004.1; contig end 5744041..5744041 Rhodopseudomonas palustris TIE-1 YP_001989039.1 CDS dnaA NC_011004.1 220 1638 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 220..1638 Rhodopseudomonas palustris TIE-1 6413025 YP_001989040.1 CDS Rpal_0002 NC_011004.1 1872 2990 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1872..2990 Rhodopseudomonas palustris TIE-1 6407643 YP_001989041.1 CDS recF NC_011004.1 3234 4373 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3234..4373 Rhodopseudomonas palustris TIE-1 6407644 YP_001989042.1 CDS gyrB NC_011004.1 4590 7031 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4590..7031 Rhodopseudomonas palustris TIE-1 6407645 YP_001989043.1 CDS Rpal_0005 NC_011004.1 7213 8331 R KEGG: bja:bll0339 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(7213..8331) Rhodopseudomonas palustris TIE-1 6407646 YP_001989044.1 CDS Rpal_0006 NC_011004.1 8457 8936 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bja:blr0340 transcriptional regulatory protein; AsnC family transcriptional regulator 8457..8936 Rhodopseudomonas palustris TIE-1 6407647 YP_001989045.1 CDS Rpal_0007 NC_011004.1 8982 10430 R KEGG: rru:Rru_A2544 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase complement(8982..10430) Rhodopseudomonas palustris TIE-1 6407648 YP_001989046.1 CDS Rpal_0008 NC_011004.1 10430 10714 R PFAM: KaiB domain protein; KEGG: rru:Rru_A2543 KaiB; KaiB domain-containing protein complement(10430..10714) Rhodopseudomonas palustris TIE-1 6407649 YP_001989047.1 CDS Rpal_0009 NC_011004.1 10724 12415 R acts as a promotor non-specific transcription repressor; circadian clock protein KaiC complement(10724..12415) Rhodopseudomonas palustris TIE-1 6407650 YP_001989048.1 CDS Rpal_0010 NC_011004.1 12809 13318 R PFAM: regulatory protein AsnC/Lrp family; KEGG: bra:BRADO0760 transcriptional regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator complement(12809..13318) Rhodopseudomonas palustris TIE-1 6407651 YP_001989049.1 CDS Rpal_0011 NC_011004.1 13458 13667 R KEGG: bbt:BBta_2219 hypothetical protein; hypothetical protein complement(13458..13667) Rhodopseudomonas palustris TIE-1 6407652 YP_001989050.1 CDS Rpal_0012 NC_011004.1 13806 14054 R hypothetical protein complement(13806..14054) Rhodopseudomonas palustris TIE-1 6407653 YP_001989051.1 CDS Rpal_0013 NC_011004.1 14056 14232 R TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: bra:BRADO2445 nitrogen fixation protein FixS; cbb3-type cytochrome oxidase maturation protein complement(14056..14232) Rhodopseudomonas palustris TIE-1 6407654 YP_001989052.1 CDS Rpal_0014 NC_011004.1 14232 16430 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_2797 nitrogen fixation protein FixI; ATPase P complement(14232..16430) Rhodopseudomonas palustris TIE-1 6407655 YP_001989053.1 CDS Rpal_0015 NC_011004.1 16465 16965 R PFAM: FixH family protein; KEGG: bra:BRADO2443 nitrogen fixation protein FixH; FixH family protein complement(16465..16965) Rhodopseudomonas palustris TIE-1 6407656 YP_001989054.1 CDS Rpal_0016 NC_011004.1 16985 18442 R TIGRFAM: cytochrome C oxidase accessory protein CcoG; KEGG: bbt:BBta_2795 nitrogen fixation protein; cytochrome C oxidase accessory protein CcoG complement(16985..18442) Rhodopseudomonas palustris TIE-1 6407657 YP_001989055.1 CDS Rpal_0017 NC_011004.1 18559 19440 R TIGRFAM: cytochrome C oxidase, cbb3-type, subunit III; PFAM: cytochrome C class I; KEGG: bra:BRADO2441 cytochrome-c oxidase FixP chain; cytochrome C oxidase, cbb3-type subunit III complement(18559..19440) Rhodopseudomonas palustris TIE-1 6407658 YP_001989056.1 CDS Rpal_0018 NC_011004.1 19448 19612 R PFAM: Cbb3-type cytochrome oxidase component; KEGG: bra:BRADO2440 cytochrome oxidase subunit, FixQ; cbb3-type cytochrome oxidase subunit complement(19448..19612) Rhodopseudomonas palustris TIE-1 6407659 YP_001989057.1 CDS Rpal_0019 NC_011004.1 19622 20356 R CcoO; FixO; cbb3-type cytochrome C oxidase subunit II complement(19622..20356) Rhodopseudomonas palustris TIE-1 6407660 YP_001989058.1 CDS Rpal_0020 NC_011004.1 20369 22015 R CcoN; FixN; cbb3-type cytochrome C oxidase subunit I complement(20369..22015) Rhodopseudomonas palustris TIE-1 6407661 YP_001989059.1 CDS Rpal_0021 NC_011004.1 22326 23246 R KEGG: bbt:BBta_0313 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase complement(22326..23246) Rhodopseudomonas palustris TIE-1 6407662 YP_001989060.1 CDS Rpal_0022 NC_011004.1 23320 24057 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO0329 acetoin(diacetyl) reductase (acetoin dehydrogenase) (AR) (meso-2,3-butanediol dehydrogenase); oxidoreductase, short chain dehydrogenase; short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(23320..24057) Rhodopseudomonas palustris TIE-1 6407663 YP_001989061.1 CDS Rpal_0023 NC_011004.1 24176 24778 R PFAM: DSBA oxidoreductase; KEGG: bja:blr0588 hypothetical protein; DSBA oxidoreductase complement(24176..24778) Rhodopseudomonas palustris TIE-1 6407664 YP_001989062.1 CDS Rpal_0024 NC_011004.1 24994 25662 D PFAM: glutathione S-transferase domain; KEGG: bja:bll0585 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 24994..25662 Rhodopseudomonas palustris TIE-1 6407665 YP_001989063.1 CDS Rpal_0025 NC_011004.1 25778 26653 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mex:Mext_3612 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(25778..26653) Rhodopseudomonas palustris TIE-1 6407666 YP_001989064.1 CDS Rpal_0026 NC_011004.1 26926 28659 R KEGG: nha:Nham_0191 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(26926..28659) Rhodopseudomonas palustris TIE-1 6407667 YP_001989065.1 CDS Rpal_0027 NC_011004.1 28765 30162 D PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_0192 major facilitator superfamily MFS_1; major facilitator superfamily protein 28765..30162 Rhodopseudomonas palustris TIE-1 6407668 YP_001989066.1 CDS Rpal_0028 NC_011004.1 30377 31471 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 30377..31471 Rhodopseudomonas palustris TIE-1 6407669 YP_001989067.1 CDS purH NC_011004.1 31529 33121 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(31529..33121) Rhodopseudomonas palustris TIE-1 6407670 YP_001989068.1 CDS Rpal_0030 NC_011004.1 33307 35061 R PFAM: heparinase II/III family protein; KEGG: bja:blr0580 hypothetical protein; heparinase II/III family protein complement(33307..35061) Rhodopseudomonas palustris TIE-1 6407671 YP_001989069.1 CDS Rpal_0031 NC_011004.1 35360 36712 R PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: bja:blr0579 SUN protein; Fmu (Sun) domain-containing protein complement(35360..36712) Rhodopseudomonas palustris TIE-1 6407672 YP_001989070.1 CDS Rpal_0032 NC_011004.1 36865 37083 D PFAM: protein of unknown function DUF1674; KEGG: bbt:BBta_0326 hypothetical protein; hypothetical protein 36865..37083 Rhodopseudomonas palustris TIE-1 6407673 YP_001989071.1 CDS Rpal_0033 NC_011004.1 37169 37744 D PFAM: nuclease (SNase domain protein); KEGG: nwi:Nwi_0154 staphylococcus nuclease (SNase-like); nuclease 37169..37744 Rhodopseudomonas palustris TIE-1 6407674 YP_001989072.1 CDS Rpal_0034 NC_011004.1 37748 38632 R KEGG: bra:BRADO0145 hypothetical protein; hypothetical protein complement(37748..38632) Rhodopseudomonas palustris TIE-1 6407675 YP_001989073.1 CDS Rpal_0035 NC_011004.1 38980 40437 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bja:blr0703 hypothetical protein; amine oxidase 38980..40437 Rhodopseudomonas palustris TIE-1 6407676 YP_001989074.1 CDS pheT NC_011004.1 40444 42855 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(40444..42855) Rhodopseudomonas palustris TIE-1 6407677 YP_001989075.1 CDS Rpal_0037 NC_011004.1 43000 43479 R PFAM: protein of unknown function DUF559; KEGG: bbt:BBta_0213 hypothetical protein; hypothetical protein complement(43000..43479) Rhodopseudomonas palustris TIE-1 6407678 YP_001989076.1 CDS pheS NC_011004.1 43710 44792 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(43710..44792) Rhodopseudomonas palustris TIE-1 6407679 YP_001989077.1 CDS rplT NC_011004.1 44936 45295 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(44936..45295) Rhodopseudomonas palustris TIE-1 6407680 YP_001989078.1 CDS rpmI NC_011004.1 45379 45579 R PFAM: ribosomal protein L35; KEGG: bbt:BBta_0216 50S ribosomal protein L35; 50S ribosomal protein L35 complement(45379..45579) Rhodopseudomonas palustris TIE-1 6407681 YP_001989079.1 CDS infC NC_011004.1 45913 46491 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(45913..46491) Rhodopseudomonas palustris TIE-1 6407682 YP_001989080.1 CDS Rpal_0042 NC_011004.1 46773 47558 D KEGG: bra:BRADO0132 conserved hypothetical protein, alpha/beta hydrolase superfamily; hypothetical protein 46773..47558 Rhodopseudomonas palustris TIE-1 6407683 YP_001989081.1 CDS Rpal_0043 NC_011004.1 47716 48828 R PFAM: domain of unknown function DUF1730; KEGG: bja:bll0714 iron-sulfur cluster binding protein; hypothetical protein complement(47716..48828) Rhodopseudomonas palustris TIE-1 6407684 YP_001989082.1 CDS Rpal_0044 NC_011004.1 48873 49565 R PFAM: glutathione S-transferase domain; KEGG: bbt:BBta_0222 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein complement(48873..49565) Rhodopseudomonas palustris TIE-1 6407685 YP_001989083.1 CDS Rpal_0045 NC_011004.1 49765 50571 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 49765..50571 Rhodopseudomonas palustris TIE-1 6407686 YP_001989084.1 CDS Rpal_0046 NC_011004.1 50621 51586 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: bra:BRADO0128 conserved hypothetical protein; NAD dependent epimerase/dehydratase family protein; NADH dehydrogenase (ubiquinone) complement(50621..51586) Rhodopseudomonas palustris TIE-1 6407687 YP_001989085.1 CDS Rpal_0047 NC_011004.1 52000 52614 D PFAM: 3'-5' exonuclease; KEGG: bja:blr0719 hypothetical protein; 3'-5' exonuclease 52000..52614 Rhodopseudomonas palustris TIE-1 6407689 YP_001989086.1 CDS Rpal_0048 NC_011004.1 52844 53584 D PFAM: protein of unknown function DUF1239; KEGG: bja:blr0720 hypothetical protein; hypothetical protein 52844..53584 Rhodopseudomonas palustris TIE-1 6407690 YP_001989087.1 CDS Rpal_0049 NC_011004.1 53593 54258 D PFAM: OstA family protein; KEGG: nha:Nham_0177 OstA-like protein; OstA family protein 53593..54258 Rhodopseudomonas palustris TIE-1 6407691 YP_001989088.1 CDS Rpal_0050 NC_011004.1 54394 55344 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nwi:Nwi_0174 ABC transporter ATPase subunit; ABC transporter 54394..55344 Rhodopseudomonas palustris TIE-1 6407692 YP_001989089.1 CDS Rpal_0051 NC_011004.1 55375 55515 D hypothetical protein 55375..55515 Rhodopseudomonas palustris TIE-1 6407693 YP_001989090.1 CDS Rpal_0052 NC_011004.1 55551 57197 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 55551..57197 Rhodopseudomonas palustris TIE-1 6407694 YP_001989091.1 CDS Rpal_0053 NC_011004.1 57255 57860 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: bbt:BBta_0120 sigma (54) modulation protein; sigma 54 modulation protein/30S ribosomal protein S30EA 57255..57860 Rhodopseudomonas palustris TIE-1 6407695 YP_001989092.1 CDS Rpal_0054 NC_011004.1 58136 58597 D TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: bra:BRADO0111 nitrogen regulatory protein; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 58136..58597 Rhodopseudomonas palustris TIE-1 6407696 YP_001989093.1 CDS Rpal_0055 NC_011004.1 59203 59469 R PFAM: protein of unknown function DUF1150; KEGG: bbt:BBta_0116 hypothetical protein; hypothetical protein complement(59203..59469) Rhodopseudomonas palustris TIE-1 6407697 YP_001989094.1 CDS Rpal_0056 NC_011004.1 59520 59945 R PFAM: heat shock protein Hsp20; KEGG: bja:bll0729 small heat shock protein; heat shock protein Hsp20 complement(59520..59945) Rhodopseudomonas palustris TIE-1 6407698 YP_001989095.1 CDS ugpC NC_011004.1 60099 61190 R part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit complement(60099..61190) Rhodopseudomonas palustris TIE-1 6407699 YP_001989096.1 CDS Rpal_0058 NC_011004.1 61193 62041 R PFAM: ABC transporter inner membrane protein; KEGG: bja:bll0731 glycerol-3-phosphate ABC transporter membrane spanning protein; ABC transporter inner membrane protein complement(61193..62041) Rhodopseudomonas palustris TIE-1 6407700 YP_001989097.1 CDS Rpal_0059 NC_011004.1 62041 62922 R PFAM: ABC transporter inner membrane protein; KEGG: bja:bll0732 glycerol-3-phosphate ABC transporter permease protein; ABC transporter inner membrane protein complement(62041..62922) Rhodopseudomonas palustris TIE-1 6407701 YP_001989098.1 CDS Rpal_0060 NC_011004.1 63087 64415 R PFAM: extracellular solute-binding protein family 1; KEGG: bja:bll0733 ABC transporter glycerol-3-phosphate-binding protein; family 1 extracellular solute-binding protein complement(63087..64415) Rhodopseudomonas palustris TIE-1 6407702 YP_001989099.1 CDS Rpal_0061 NC_011004.1 64647 65852 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:bll0734 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F complement(64647..65852) Rhodopseudomonas palustris TIE-1 6407703 YP_001989100.1 CDS Rpal_0062 NC_011004.1 65898 66134 R PFAM: excinuclease ABC subunit C; KEGG: rle:RL0110 hypothetical protein; excinuclease ABC subunit C complement(65898..66134) Rhodopseudomonas palustris TIE-1 6407704 YP_001989101.1 CDS Rpal_0063 NC_011004.1 66681 67082 R PFAM: conserved hypothetical protein; KEGG: bja:bll0737 hypothetical protein; hypothetical protein complement(66681..67082) Rhodopseudomonas palustris TIE-1 6407706 YP_001989102.1 CDS Rpal_0064 NC_011004.1 67223 68560 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 67223..68560 Rhodopseudomonas palustris TIE-1 6407707 YP_001989103.1 CDS Rpal_0065 NC_011004.1 68564 69238 R PFAM: protein of unknown function DUF374; KEGG: mag:amb4091 hypothetical protein; hypothetical protein complement(68564..69238) Rhodopseudomonas palustris TIE-1 6407708 YP_001989104.1 CDS cmk NC_011004.1 69403 70041 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 69403..70041 Rhodopseudomonas palustris TIE-1 6407709 YP_001989105.1 CDS rpsA NC_011004.1 70342 72039 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 70342..72039 Rhodopseudomonas palustris TIE-1 6407710 YP_001989106.1 CDS Rpal_0068 NC_011004.1 72268 73248 D TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: bra:BRADO0095 peptidase S49 family; signal peptide peptidase SppA; signal peptide peptidase SppA, 36K type 72268..73248 Rhodopseudomonas palustris TIE-1 6407711 YP_001989107.1 CDS ihfB NC_011004.1 73414 73728 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 73414..73728 Rhodopseudomonas palustris TIE-1 6407712 YP_001989108.1 CDS Rpal_0070 NC_011004.1 73766 74152 D KEGG: bja:blr0743 hypothetical protein; hypothetical protein 73766..74152 Rhodopseudomonas palustris TIE-1 6407713 YP_001989109.1 CDS Rpal_0071 NC_011004.1 74211 74852 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 74211..74852 Rhodopseudomonas palustris TIE-1 6407714 YP_001989110.1 CDS Rpal_0072 NC_011004.1 74866 76080 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 74866..76080 Rhodopseudomonas palustris TIE-1 6407715 YP_001989111.1 CDS trpA NC_011004.1 76080 76916 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 76080..76916 Rhodopseudomonas palustris TIE-1 6407716 YP_001989112.1 CDS Rpal_0074 NC_011004.1 77026 78009 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 77026..78009 Rhodopseudomonas palustris TIE-1 6407717 YP_001989113.1 CDS Rpal_0075 NC_011004.1 78006 79334 D KEGG: nha:Nham_0060 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 78006..79334 Rhodopseudomonas palustris TIE-1 6407718 YP_001989114.1 CDS Rpal_0076 NC_011004.1 79508 79828 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: bbt:BBta_0091 thioredoxin 1, redox factor; thioredoxin complement(79508..79828) Rhodopseudomonas palustris TIE-1 6407719 YP_001989115.1 CDS Rpal_0077 NC_011004.1 79925 83410 R TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: bja:bll0752 helicase 2; double-strand break repair helicase AddA complement(79925..83410) Rhodopseudomonas palustris TIE-1 6407720 YP_001989116.1 CDS Rpal_0078 NC_011004.1 83407 86556 R TIGRFAM: double-strand break repair protein AddB; KEGG: bbt:BBta_0089 helicase-exonuclease type V protein family, AddB subunit; double-strand break repair protein AddB complement(83407..86556) Rhodopseudomonas palustris TIE-1 6407721 YP_001989117.1 CDS Rpal_0079 NC_011004.1 86632 87354 R PFAM: nucleotidyl transferase; KEGG: nha:Nham_0056 nucleotidyl transferase; nucleotidyl transferase complement(86632..87354) Rhodopseudomonas palustris TIE-1 6407722 YP_001989118.1 CDS Rpal_0080 NC_011004.1 87512 87820 R KEGG: bbt:BBta_0087 hypothetical protein; hypothetical protein complement(87512..87820) Rhodopseudomonas palustris TIE-1 6407723 YP_001989119.1 CDS Rpal_0081 NC_011004.1 87924 89444 R PFAM: aminoglycoside phosphotransferase; protein of unknown function UPF0079; KEGG: nha:Nham_0054 protein of unknown function UPF0079; hypothetical protein complement(87924..89444) Rhodopseudomonas palustris TIE-1 6407724 YP_001989120.1 CDS Rpal_0082 NC_011004.1 89441 91954 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: nwi:Nwi_0045 histidine kinase; PAS/PAC sensor signal transduction histidine kinase complement(89441..91954) Rhodopseudomonas palustris TIE-1 6407725 YP_001989121.1 CDS dut NC_011004.1 92174 92632 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(92174..92632) Rhodopseudomonas palustris TIE-1 6407726 YP_001989122.1 CDS Rpal_0084 NC_011004.1 92629 94074 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; in the alphaproteobacteria, this protein contains an N-terminal SbtC-like domain; bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(92629..94074) Rhodopseudomonas palustris TIE-1 6407727 YP_001989123.1 CDS Rpal_0085 NC_011004.1 94128 95705 R TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: bbt:BBta_0082 ubiquinone biosynthesis protein UbiB; 2-polyprenylphenol 6-hydroxylase complement(94128..95705) Rhodopseudomonas palustris TIE-1 6407728 YP_001989124.1 CDS ubiE NC_011004.1 95702 96463 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(95702..96463) Rhodopseudomonas palustris TIE-1 6407729 YP_001989125.1 CDS Rpal_0087 NC_011004.1 96707 97582 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 96707..97582 Rhodopseudomonas palustris TIE-1 6407730 YP_001989126.1 CDS Rpal_0088 NC_011004.1 97634 98980 R PFAM: peptidoglycan-binding domain 1 protein; KEGG: bja:bll0764 hypothetical protein; peptidoglycan-binding domain 1 protein complement(97634..98980) Rhodopseudomonas palustris TIE-1 6407731 YP_001989127.1 CDS Rpal_0089 NC_011004.1 99189 99989 D PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: bja:blr0765 molybdopterin biosynthesis protein; UBA/THIF-type NAD/FAD binding protein 99189..99989 Rhodopseudomonas palustris TIE-1 6407732 YP_001989128.1 CDS Rpal_0090 NC_011004.1 100114 101802 D PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: bja:blr0559 MFS permease; hypothetical protein 100114..101802 Rhodopseudomonas palustris TIE-1 6407733 YP_001989129.1 CDS Rpal_0091 NC_011004.1 101783 101881 R hypothetical protein complement(101783..101881) Rhodopseudomonas palustris TIE-1 6407734 YP_001989130.1 CDS Rpal_0092 NC_011004.1 101934 102152 R KEGG: bra:BRADO0286 conserved hypothetical protein; signal peptide; hypothetical protein complement(101934..102152) Rhodopseudomonas palustris TIE-1 6407735 YP_001989131.1 CDS Rpal_0093 NC_011004.1 102281 102622 R KEGG: bja:blr3464 hypothetical protein; hypothetical protein complement(102281..102622) Rhodopseudomonas palustris TIE-1 6407736 YP_001989132.1 CDS Rpal_0094 NC_011004.1 102861 103265 R hypothetical protein complement(102861..103265) Rhodopseudomonas palustris TIE-1 6407737 YP_001989133.1 CDS Rpal_0095 NC_011004.1 103344 103685 R KEGG: mex:Mext_0878 collagen triple helix repeat; hypothetical protein complement(103344..103685) Rhodopseudomonas palustris TIE-1 6407738 YP_001989134.1 CDS Rpal_0096 NC_011004.1 104226 104501 R KEGG: bra:BRADO2381 hypothetical protein; hypothetical protein complement(104226..104501) Rhodopseudomonas palustris TIE-1 6407739 YP_001989135.1 CDS Rpal_0097 NC_011004.1 104632 105279 D PFAM: regulatory protein TetR; KEGG: bbt:BBta_2740 transcriptional regulator, TetR family; TetR family transcriptional regulator 104632..105279 Rhodopseudomonas palustris TIE-1 6407740 YP_001989136.1 CDS Rpal_0098 NC_011004.1 105276 106193 D PFAM: PepSY-associated TM helix domain protein; KEGG: bja:bll3835 hypothetical protein; PepSY-associated TM helix domain-containing protein 105276..106193 Rhodopseudomonas palustris TIE-1 6407741 YP_001989137.1 CDS Rpal_0099 NC_011004.1 106242 107468 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: nha:Nham_0992 secretion protein HlyD; RND family efflux transporter MFP subunit 106242..107468 Rhodopseudomonas palustris TIE-1 6407742 YP_001989138.1 CDS Rpal_0100 NC_011004.1 107472 110621 D TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: nha:Nham_0993 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 107472..110621 Rhodopseudomonas palustris TIE-1 6407743 YP_001989139.1 CDS Rpal_0101 NC_011004.1 110760 111170 D PFAM: protein of unknown function DUF1078 domain protein; KEGG: bra:BRADO6624 flagellar basal-body rod protein (FlgC); hypothetical protein 110760..111170 Rhodopseudomonas palustris TIE-1 6407744 YP_001989140.1 CDS Rpal_0102 NC_011004.1 111313 112371 R KEGG: mrd:Mrad2831_4760 oligopeptide/dipeptide ABC transporter ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase complement(111313..112371) Rhodopseudomonas palustris TIE-1 6407745 YP_001989141.1 CDS Rpal_0103 NC_011004.1 112368 113366 R KEGG: mrd:Mrad2831_4761 oligopeptide/dipeptide ABC transporter ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase complement(112368..113366) Rhodopseudomonas palustris TIE-1 6407746 YP_001989142.1 CDS Rpal_0104 NC_011004.1 113369 114277 R PFAM: ABC transporter inner membrane protein; KEGG: mrd:Mrad2831_4762 ABC transporter inner membrane protein; ABC transporter inner membrane protein complement(113369..114277) Rhodopseudomonas palustris TIE-1 6407747 YP_001989143.1 CDS Rpal_0105 NC_011004.1 114274 115254 R PFAM: ABC transporter inner membrane protein; KEGG: mrd:Mrad2831_4763 ABC transporter inner membrane protein; ABC transporter inner membrane protein complement(114274..115254) Rhodopseudomonas palustris TIE-1 6407748 YP_001989144.1 CDS Rpal_0106 NC_011004.1 115283 116884 R PFAM: extracellular solute-binding protein family 5; KEGG: mrd:Mrad2831_4764 extracellular solute-binding protein family 5; family 5 extracellular solute-binding protein complement(115283..116884) Rhodopseudomonas palustris TIE-1 6407749 YP_001989145.1 CDS Rpal_0107 NC_011004.1 116974 117930 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mrd:Mrad2831_4765 cobalamin synthesis protein P47K; cobalamin synthesis protein P47K complement(116974..117930) Rhodopseudomonas palustris TIE-1 6407750 YP_001989146.1 CDS Rpal_0108 NC_011004.1 117927 119570 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mrd:Mrad2831_4766 amidohydrolase 3; amidohydrolase complement(117927..119570) Rhodopseudomonas palustris TIE-1 6407751 YP_001989147.1 CDS Rpal_0109 NC_011004.1 119809 121350 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: mrd:Mrad2831_4755 transcriptional regulator, GntR family with aminotransferase domain protein; GntR family transcriptional regulator 119809..121350 Rhodopseudomonas palustris TIE-1 6407752 YP_001989148.1 CDS Rpal_0110 NC_011004.1 121366 122574 R KEGG: bra:BRADO6883 ABC transporter substrate-binding protein; branched-chain amino acid transporter; branched-chain amino acid ABC transporter substrate-binding protein complement(121366..122574) Rhodopseudomonas palustris TIE-1 6407753 YP_001989149.1 CDS Rpal_0111 NC_011004.1 122594 123634 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gme:Gmet_2235 alcohol dehydrogenase superfamily, zinc-containing; alcohol dehydrogenase GroES domain-containing protein complement(122594..123634) Rhodopseudomonas palustris TIE-1 6407754 YP_001989150.1 CDS Rpal_0112 NC_011004.1 123664 125412 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: mjl:Mjls_2332 thiamine pyrophosphate enzyme TPP binding domain protein; thiamine pyrophosphate protein TPP binding domain-containing protein complement(123664..125412) Rhodopseudomonas palustris TIE-1 6407755 YP_001989151.1 CDS Rpal_0113 NC_011004.1 125453 126241 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_0924 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(125453..126241) Rhodopseudomonas palustris TIE-1 6407756 YP_001989152.1 CDS Rpal_0114 NC_011004.1 126442 127104 D PFAM: regulatory protein TetR; KEGG: hne:HNE_2415 transcriptional regulator, TetR family; TetR family transcriptional regulator 126442..127104 Rhodopseudomonas palustris TIE-1 6407757 YP_001989153.1 CDS Rpal_0115 NC_011004.1 127157 127945 R PFAM: protein of unknown function DUF81; KEGG: mrd:Mrad2831_4756 protein of unknown function DUF81; hypothetical protein complement(127157..127945) Rhodopseudomonas palustris TIE-1 6407758 YP_001989154.1 CDS Rpal_0116 NC_011004.1 127954 129465 R PFAM: Aldehyde Dehydrogenase_; KEGG: mrd:Mrad2831_4757 aldehyde dehydrogenase; aldehyde dehydrogenase complement(127954..129465) Rhodopseudomonas palustris TIE-1 6407759 YP_001989155.1 CDS Rpal_0117 NC_011004.1 129677 130084 D PFAM: protein of unknown function DUF1486; KEGG: mrd:Mrad2831_4758 protein of unknown function DUF1486; hypothetical protein 129677..130084 Rhodopseudomonas palustris TIE-1 6407760 YP_001989156.1 CDS Rpal_0118 NC_011004.1 130081 131475 D PFAM: FAD dependent oxidoreductase; KEGG: mrd:Mrad2831_4759 FAD dependent oxidoreductase; FAD dependent oxidoreductase 130081..131475 Rhodopseudomonas palustris TIE-1 6407761 YP_001989157.1 CDS Rpal_0119 NC_011004.1 131599 131952 R KEGG: xau:Xaut_4360 hypothetical protein; hypothetical protein complement(131599..131952) Rhodopseudomonas palustris TIE-1 6407762 YP_001989158.1 CDS Rpal_0120 NC_011004.1 132295 133356 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: azc:AZC_1833 dTDP-D-glucose-4,6-dehydratase; dTDP-glucose 4,6-dehydratase 132295..133356 Rhodopseudomonas palustris TIE-1 6407763 YP_001989159.1 CDS Rpal_0121 NC_011004.1 133382 133939 D KEGG: rru:Rru_B0038 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 133382..133939 Rhodopseudomonas palustris TIE-1 6407764 YP_001989160.1 CDS Rpal_0122 NC_011004.1 133944 134837 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rle:RL1624 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 133944..134837 Rhodopseudomonas palustris TIE-1 6407765 YP_001989161.1 CDS Rpal_0123 NC_011004.1 134839 135714 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: ccr:CC_1141 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 134839..135714 Rhodopseudomonas palustris TIE-1 6407766 YP_001989162.1 CDS Rpal_0124 NC_011004.1 135802 136692 D KEGG: azc:AZC_3956 hypothetical protein; hypothetical protein 135802..136692 Rhodopseudomonas palustris TIE-1 6407767 YP_001989163.1 CDS Rpal_0125 NC_011004.1 136785 139064 D PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: ava:Ava_1003 multi-sensor signal transduction histidine kinase; GAF sensor signal transduction histidine kinase 136785..139064 Rhodopseudomonas palustris TIE-1 6407768 YP_001989164.1 CDS Rpal_0126 NC_011004.1 139057 140697 D PFAM: TrkA-N domain protein; ion transport 2 domain protein; KEGG: eba:ebA5259 KTN NAD-binding domain involved with K+ transport precursor; TrkA-N domain-containing protein 139057..140697 Rhodopseudomonas palustris TIE-1 6407769 YP_001989165.1 CDS Rpal_0127 NC_011004.1 140704 141528 R PFAM: metallophosphoesterase; KEGG: bja:bll4141 hypothetical protein; metallophosphoesterase complement(140704..141528) Rhodopseudomonas palustris TIE-1 6407770 YP_001989166.1 CDS Rpal_0128 NC_011004.1 141525 142349 R PFAM: metallophosphoesterase; KEGG: mlo:mll3631 3',5'-cyclic-nucleotide phosphodiesterase, CpdA; metallophosphoesterase complement(141525..142349) Rhodopseudomonas palustris TIE-1 6407771 YP_001989167.1 CDS Rpal_0129 NC_011004.1 142414 143694 R PFAM: extracellular solute-binding protein family 1; KEGG: bcs:BCAN_B1211 hypothetical protein; family 1 extracellular solute-binding protein complement(142414..143694) Rhodopseudomonas palustris TIE-1 6407772 YP_001989168.1 CDS Rpal_0130 NC_011004.1 143717 144553 R PFAM: ABC transporter inner membrane protein; KEGG: bcs:BCAN_B1212 lactose transport system permease protein LacG; ABC transporter inner membrane protein complement(143717..144553) Rhodopseudomonas palustris TIE-1 6407773 YP_001989169.1 CDS Rpal_0131 NC_011004.1 144550 145509 R PFAM: ABC transporter inner membrane protein; KEGG: oan:Oant_1668 ABC transporter inner membrane protein; ABC transporter inner membrane protein complement(144550..145509) Rhodopseudomonas palustris TIE-1 6407774 YP_001989170.1 CDS Rpal_0132 NC_011004.1 145502 146656 R PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: sil:SPO1823 sugar ABC transporter ATP-binding protein; ABC transporter complement(145502..146656) Rhodopseudomonas palustris TIE-1 6407775 YP_001989171.1 CDS Rpal_0133 NC_011004.1 146784 147662 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMb21535 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 146784..147662 Rhodopseudomonas palustris TIE-1 6407776 YP_001989172.1 CDS Rpal_0134 NC_011004.1 147668 148363 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: smd:Smed_4541 sulfate ABC transporter ATPase subunit; ABC transporter complement(147668..148363) Rhodopseudomonas palustris TIE-1 6407777 YP_001989173.1 CDS Rpal_0135 NC_011004.1 148360 149133 R PFAM: ABC transporter inner membrane protein; KEGG: xau:Xaut_4037 ABC transporter inner membrane protein; ABC transporter inner membrane protein complement(148360..149133) Rhodopseudomonas palustris TIE-1 6407778 YP_001989174.1 CDS Rpal_0136 NC_011004.1 149123 150115 R KEGG: sth:STH760 ABC transporter substrate-binding protein; ABC transporter substrate-binding protein complement(149123..150115) Rhodopseudomonas palustris TIE-1 6407779 YP_001989175.1 CDS Rpal_0137 NC_011004.1 150131 151990 R TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: dvu:DVU1771 [Fe] hydrogenase gamma; hydrogenase, Fe-only complement(150131..151990) Rhodopseudomonas palustris TIE-1 6407780 YP_001989176.1 CDS Rpal_0138 NC_011004.1 151995 153986 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvl:Dvul_1383 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(151995..153986) Rhodopseudomonas palustris TIE-1 6407781 YP_001989177.1 CDS Rpal_0139 NC_011004.1 154156 155865 R KEGG: bja:blr2350 hypothetical protein; methyl-accepting chemotaxis sensory transducer complement(154156..155865) Rhodopseudomonas palustris TIE-1 6407782 YP_001989178.1 CDS Rpal_0140 NC_011004.1 155870 156961 R PFAM: CheB methylesterase; response regulator receiver; KEGG: bja:blr2349 chemotaxis two-component response regulator; response regulator receiver modulated CheB methylesterase complement(155870..156961) Rhodopseudomonas palustris TIE-1 6407783 YP_001989179.1 CDS Rpal_0141 NC_011004.1 156982 157824 R PFAM: MCP methyltransferase CheR-type; KEGG: bja:blr2348 protein-glutamate O-methyltransferase; CheR-type MCP methyltransferase complement(156982..157824) Rhodopseudomonas palustris TIE-1 6407784 YP_001989180.1 CDS Rpal_0142 NC_011004.1 157985 160186 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_7837 methyl-accepting chemotaxis protein (MCP); methyl-accepting chemotaxis sensory transducer complement(157985..160186) Rhodopseudomonas palustris TIE-1 6407785 YP_001989181.1 CDS Rpal_0143 NC_011004.1 160253 160741 R PFAM: CheW domain protein; KEGG: bbt:BBta_7835 chemotaxis protein CheW; CheW protein complement(160253..160741) Rhodopseudomonas palustris TIE-1 6407786 YP_001989182.1 CDS Rpal_0144 NC_011004.1 160802 161272 R PFAM: CheW domain protein; KEGG: bja:blr2344 probable chemotaxis protein; CheW protein complement(160802..161272) Rhodopseudomonas palustris TIE-1 6407787 YP_001989183.1 CDS Rpal_0145 NC_011004.1 161272 163338 R PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: bbt:BBta_6737 chemotaxis protein CheA; CheA signal transduction histidine kinase complement(161272..163338) Rhodopseudomonas palustris TIE-1 6407788 YP_001989184.1 CDS Rpal_0146 NC_011004.1 163335 163700 R PFAM: response regulator receiver; KEGG: bja:blr2342 chemotaxis two-component response regulator; response regulator receiver protein complement(163335..163700) Rhodopseudomonas palustris TIE-1 6407789 YP_001989185.1 CDS Rpal_0147 NC_011004.1 163700 164023 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: bja:blr2341 hypothetical protein; anti-sigma-factor antagonist complement(163700..164023) Rhodopseudomonas palustris TIE-1 6407790 YP_001989186.1 CDS Rpal_0148 NC_011004.1 164312 165469 D PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: bja:bll2340 two-component response regulator; response regulator receiver modulated metal dependent phosphohydrolase 164312..165469 Rhodopseudomonas palustris TIE-1 6407791 YP_001989187.1 CDS Rpal_0149 NC_011004.1 165638 165820 R hypothetical protein complement(165638..165820) Rhodopseudomonas palustris TIE-1 6407792 YP_001989188.1 CDS Rpal_0150 NC_011004.1 166287 167450 R KEGG: bra:BRADO0437 conserved hypothetical protein; glucokinase; hypothetical protein complement(166287..167450) Rhodopseudomonas palustris TIE-1 6407794 YP_001989189.1 CDS rplU NC_011004.1 167773 168153 D PFAM: ribosomal protein L21; KEGG: nwi:Nwi_0439 50S ribosomal protein L21; 50S ribosomal protein L21 167773..168153 Rhodopseudomonas palustris TIE-1 6407795 YP_001989190.1 CDS rpmA NC_011004.1 168243 168515 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 168243..168515 Rhodopseudomonas palustris TIE-1 6407796 YP_001989191.1 CDS Rpal_0153 NC_011004.1 168650 169249 D PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_0516 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 168650..169249 Rhodopseudomonas palustris TIE-1 6407797 YP_001989192.1 CDS Rpal_0154 NC_011004.1 169461 169652 D hypothetical protein 169461..169652 Rhodopseudomonas palustris TIE-1 6407798 YP_001989193.1 CDS Rpal_0155 NC_011004.1 169782 169955 D hypothetical protein 169782..169955 Rhodopseudomonas palustris TIE-1 6407799 YP_001989194.1 CDS Rpal_0156 NC_011004.1 169956 170861 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:bll0423 hypothetical protein; hypothetical protein complement(169956..170861) Rhodopseudomonas palustris TIE-1 6407800 YP_001989195.1 CDS obgE NC_011004.1 171013 172074 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 171013..172074 Rhodopseudomonas palustris TIE-1 6407801 YP_001989196.1 CDS Rpal_0158 NC_011004.1 172213 173343 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 172213..173343 Rhodopseudomonas palustris TIE-1 6407802 YP_001989197.1 CDS proA NC_011004.1 173547 174839 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 173547..174839 Rhodopseudomonas palustris TIE-1 6407803 YP_001989198.1 CDS nadD NC_011004.1 174864 175493 D transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 174864..175493 Rhodopseudomonas palustris TIE-1 6407804 YP_001989199.1 CDS Rpal_0161 NC_011004.1 175708 176160 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: bbt:BBta_0417 hypothetical protein; iojap family protein 175708..176160 Rhodopseudomonas palustris TIE-1 6407805 YP_001989200.1 CDS Rpal_0162 NC_011004.1 176250 176732 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 176250..176732 Rhodopseudomonas palustris TIE-1 6407806 YP_001989201.1 CDS Rpal_0163 NC_011004.1 176752 178143 D PFAM: peptidase M23; KEGG: nha:Nham_0524 peptidase M23B; peptidase M23 176752..178143 Rhodopseudomonas palustris TIE-1 6407807 YP_001989202.1 CDS Rpal_0164 NC_011004.1 178140 179516 D KEGG: bja:blr0434 carboxy-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 178140..179516 Rhodopseudomonas palustris TIE-1 6407808 YP_001989203.1 CDS Rpal_0165 NC_011004.1 179667 180905 D PFAM: protein of unknown function DUF610 YibQ; KEGG: nha:Nham_0526 protein of unknown function DUF610, YibQ; hypothetical protein 179667..180905 Rhodopseudomonas palustris TIE-1 6407809 YP_001989204.1 CDS Rpal_0166 NC_011004.1 180944 181450 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 180944..181450 Rhodopseudomonas palustris TIE-1 6407810 YP_001989205.1 CDS Rpal_0167 NC_011004.1 181632 182702 R KEGG: mex:Mext_4348 hypothetical protein; hypothetical protein complement(181632..182702) Rhodopseudomonas palustris TIE-1 6407811 YP_001989206.1 CDS Rpal_0168 NC_011004.1 182970 183917 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: mca:MCA1165 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 182970..183917 Rhodopseudomonas palustris TIE-1 6407812 YP_001989207.1 CDS Rpal_0169 NC_011004.1 183914 184435 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 183914..184435 Rhodopseudomonas palustris TIE-1 6407813 YP_001989208.1 CDS atpC NC_011004.1 184618 185025 R produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit epsilon complement(184618..185025) Rhodopseudomonas palustris TIE-1 6407814 YP_001989209.1 CDS Rpal_0171 NC_011004.1 185139 186569 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(185139..186569) Rhodopseudomonas palustris TIE-1 6407815 YP_001989210.1 CDS Rpal_0172 NC_011004.1 186641 187516 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(186641..187516) Rhodopseudomonas palustris TIE-1 6407816 YP_001989211.1 CDS Rpal_0173 NC_011004.1 187660 189192 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(187660..189192) Rhodopseudomonas palustris TIE-1 6407817 YP_001989212.1 CDS Rpal_0174 NC_011004.1 189192 189752 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(189192..189752) Rhodopseudomonas palustris TIE-1 6407818 YP_001989213.1 CDS Rpal_0175 NC_011004.1 190456 190926 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: bja:blr044 hypothetical protein; rare lipoprotein A 190456..190926 Rhodopseudomonas palustris TIE-1 6407819 YP_001989214.1 CDS Rpal_0176 NC_011004.1 191082 193292 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(191082..193292) Rhodopseudomonas palustris TIE-1 6407820 YP_001989215.1 CDS xerC NC_011004.1 193494 194465 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 193494..194465 Rhodopseudomonas palustris TIE-1 6407821 YP_001989216.1 CDS Rpal_0178 NC_011004.1 194606 195196 D KEGG: bbt:BBta_0400 membrane protein of unknown function; hypothetical protein 194606..195196 Rhodopseudomonas palustris TIE-1 6407822 YP_001989217.1 CDS Rpal_0179 NC_011004.1 195260 195802 R KEGG: bja:bll0448 hypothetical protein; hypothetical protein complement(195260..195802) Rhodopseudomonas palustris TIE-1 6407823 YP_001989218.1 CDS Rpal_0180 NC_011004.1 195842 197245 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(195842..197245) Rhodopseudomonas palustris TIE-1 6407824 YP_001989219.1 CDS Rpal_0181 NC_011004.1 197277 198023 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_0397 oxidoreductase (YgfF), NAD(P)-binding domain; short-chain dehydrogenase/reductase SDR complement(197277..198023) Rhodopseudomonas palustris TIE-1 6407825 YP_001989220.1 CDS Rpal_0182 NC_011004.1 198031 198432 R KEGG: bcs:BCAN_A1965 hypothetical protein; hypothetical protein complement(198031..198432) Rhodopseudomonas palustris TIE-1 6407826 YP_001989221.1 CDS Rpal_0183 NC_011004.1 198491 199744 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(198491..199744) Rhodopseudomonas palustris TIE-1 6407827 YP_001989222.1 CDS sucA NC_011004.1 199849 202806 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(199849..202806) Rhodopseudomonas palustris TIE-1 6407828 YP_001989223.1 CDS Rpal_0185 NC_011004.1 202934 203818 R TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: bbt:BBta_0394 succinyl-CoA synthetase, alpha subunit, NAD(P)-binding; succinyl-CoA synthetase subunit alpha complement(202934..203818) Rhodopseudomonas palustris TIE-1 6407829 YP_001989224.1 CDS sucC NC_011004.1 203883 205079 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(203883..205079) Rhodopseudomonas palustris TIE-1 6407830 YP_001989225.1 CDS Rpal_0187 NC_011004.1 205175 206143 R Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase complement(205175..206143) Rhodopseudomonas palustris TIE-1 6407831 YP_001989226.1 CDS Rpal_0188 NC_011004.1 206289 207473 R PFAM: AFG1-family ATPase; KEGG: bra:BRADO0402 ATPase (YhcM) AFG1 family; AFG1 family ATPase complement(206289..207473) Rhodopseudomonas palustris TIE-1 6407832 YP_001989227.1 CDS Rpal_0189 NC_011004.1 207556 208095 R TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: bra:BRADO0401 2'-5' RNA ligase; 2'-5' RNA ligase complement(207556..208095) Rhodopseudomonas palustris TIE-1 6407833 YP_001989228.1 CDS Rpal_0190 NC_011004.1 208301 208915 R PFAM: lipolytic protein G-D-S-L family; KEGG: bja:bll0459 esterase; G-D-S-L family lipolytic protein complement(208301..208915) Rhodopseudomonas palustris TIE-1 6407834 YP_001989229.1 CDS Rpal_0191 NC_011004.1 208995 209738 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr0460 probable ABC transporter ATP-binding protein; ABC transporter 208995..209738 Rhodopseudomonas palustris TIE-1 6407835 YP_001989230.1 CDS Rpal_0192 NC_011004.1 209742 212312 D PFAM: protein of unknown function DUF214; KEGG: nha:Nham_0550 protein of unknown function DUF214; hypothetical protein 209742..212312 Rhodopseudomonas palustris TIE-1 6407836 YP_001989231.1 CDS Rpal_0195 NC_011004.1 214465 215259 D PFAM: aminoglycoside phosphotransferase; KEGG: pap:PSPA7_3721 aminoglycoside 3'-phosphotransferase; aminoglycoside phosphotransferase 214465..215259 Rhodopseudomonas palustris TIE-1 6407839 YP_001989232.1 CDS Rpal_0196 NC_011004.1 215859 216389 D PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_0238 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 215859..216389 Rhodopseudomonas palustris TIE-1 6407840 YP_001989233.1 CDS Rpal_0197 NC_011004.1 216449 216817 R KEGG: nha:Nham_0406 hypothetical protein; hypothetical protein complement(216449..216817) Rhodopseudomonas palustris TIE-1 6407841 YP_001989234.1 CDS Rpal_0198 NC_011004.1 217221 217976 R PFAM: protein of unknown function DUF1223; KEGG: nha:Nham_0407 protein of unknown function DUF1223; hypothetical protein complement(217221..217976) Rhodopseudomonas palustris TIE-1 6407842 YP_001989235.1 CDS Rpal_0199 NC_011004.1 218143 220860 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(218143..220860) Rhodopseudomonas palustris TIE-1 6407843 YP_001989236.1 CDS Rpal_0200 NC_011004.1 221076 221678 D ATP-binding protein; required for proper cytochrome C maturation; cytochrome C biogenesis protein CcmA 221076..221678 Rhodopseudomonas palustris TIE-1 6407844 YP_001989237.1 CDS Rpal_0201 NC_011004.1 221675 222343 D TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome C-type biogenesis protein CcmB; KEGG: bja:blr0468 heme exporter protein B; heme exporter protein CcmB 221675..222343 Rhodopseudomonas palustris TIE-1 6407845 YP_001989238.1 CDS Rpal_0202 NC_011004.1 222436 223170 D TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome C assembly protein; KEGG: nwi:Nwi_0320 cytochrome C-type biogenesis protein CcmC; heme exporter protein CcmC 222436..223170 Rhodopseudomonas palustris TIE-1 6407846 YP_001989239.1 CDS Rpal_0203 NC_011004.1 223170 223343 D TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); KEGG: nha:Nham_0412 heme exporter protein D (CcmD); heme exporter protein CcmD 223170..223343 Rhodopseudomonas palustris TIE-1 6407847 YP_001989240.1 CDS Rpal_0204 NC_011004.1 223360 223956 D TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: bja:blr0471 thiol:disulfide interchange protein; protein thiol/disulfide oxidoreductase DsbE 223360..223956 Rhodopseudomonas palustris TIE-1 6407848 YP_001989241.1 CDS Rpal_0205 NC_011004.1 224096 224479 D KEGG: mex:Mext_2496 hypothetical protein; hypothetical protein 224096..224479 Rhodopseudomonas palustris TIE-1 6407849 YP_001989242.1 CDS Rpal_0206 NC_011004.1 224619 225236 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(224619..225236) Rhodopseudomonas palustris TIE-1 6407850 YP_001989243.1 CDS Rpal_0207 NC_011004.1 225233 226180 R KEGG: bja:bll0473 probable cell division protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; signal recognition particle-docking protein FtsY complement(225233..226180) Rhodopseudomonas palustris TIE-1 6407851 YP_001989244.1 CDS Rpal_0208 NC_011004.1 226209 227177 D PFAM: pseudouridine synthase; KEGG: bra:BRADO0385 RNA pseudouridine synthase (uracil hydrolyase); pseudouridine synthase 226209..227177 Rhodopseudomonas palustris TIE-1 6407852 YP_001989245.1 CDS Rpal_0209 NC_011004.1 227541 229493 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 227541..229493 Rhodopseudomonas palustris TIE-1 6407853 YP_001989246.1 CDS Rpal_0210 NC_011004.1 229876 230403 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr0574 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 229876..230403 Rhodopseudomonas palustris TIE-1 6407854 YP_001989247.1 CDS Rpal_0211 NC_011004.1 230478 231398 R PFAM: OmpA/MotB domain protein; KEGG: bra:BRADO0242 hypothetical protein; OmpA/MotB domain-containing protein complement(230478..231398) Rhodopseudomonas palustris TIE-1 6407855 YP_001989248.1 CDS Rpal_0212 NC_011004.1 231500 232618 D KEGG: ani:AN5649.2 hypothetical protein; hypothetical protein 231500..232618 Rhodopseudomonas palustris TIE-1 6407856 YP_001989249.1 CDS Rpal_0213 NC_011004.1 232778 233035 R KEGG: bja:bsr0520 hypothetical protein; hypothetical protein complement(232778..233035) Rhodopseudomonas palustris TIE-1 6407857 YP_001989250.1 CDS Rpal_0214 NC_011004.1 233035 233523 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bbt:BBta_0235 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(233035..233523) Rhodopseudomonas palustris TIE-1 6407858 YP_001989251.1 CDS sdhB NC_011004.1 233760 234542 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(233760..234542) Rhodopseudomonas palustris TIE-1 6407859 YP_001989252.1 CDS sdhA NC_011004.1 234650 236473 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(234650..236473) Rhodopseudomonas palustris TIE-1 6407860 YP_001989253.1 CDS Rpal_0217 NC_011004.1 236477 236890 R TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: nha:Nham_3617 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, hydrophobic membrane anchor protein complement(236477..236890) Rhodopseudomonas palustris TIE-1 6407861 YP_001989254.1 CDS Rpal_0218 NC_011004.1 236887 237285 R TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: bja:blr0512 succinate dehydrogenase cytochrome b-556 subunit; succinate dehydrogenase, cytochrome b556 subunit complement(236887..237285) Rhodopseudomonas palustris TIE-1 6407862 YP_001989255.1 CDS Rpal_0219 NC_011004.1 237664 238608 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: nha:Nham_3422 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 237664..238608 Rhodopseudomonas palustris TIE-1 6407863 YP_001989256.1 CDS Rpal_0220 NC_011004.1 238841 240352 R catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase complement(238841..240352) Rhodopseudomonas palustris TIE-1 6407864 YP_001989257.1 CDS Rpal_0221 NC_011004.1 240629 241204 D PFAM: beta-Ig-H3/fasciclin; KEGG: bbt:BBta_0336 exported protein of unknown function with Fas1 domain; beta-Ig-H3/fasciclin 240629..241204 Rhodopseudomonas palustris TIE-1 6407865 YP_001989258.1 CDS Rpal_0222 NC_011004.1 241426 242064 D KEGG: bja:bll0506 hypothetical protein; hypothetical protein 241426..242064 Rhodopseudomonas palustris TIE-1 6407866 YP_001989259.1 CDS Rpal_0223 NC_011004.1 242180 242959 D PFAM: oxidoreductase molybdopterin binding; KEGG: nha:Nham_3598 oxidoreductase, molybdopterin binding; molybdopterin binding oxidoreductase 242180..242959 Rhodopseudomonas palustris TIE-1 6407867 YP_001989260.1 CDS Rpal_0224 NC_011004.1 243232 243750 D PFAM: superoxide dismutase copper/zinc binding; KEGG: nha:Nham_3597 superoxide dismutase, copper/zinc binding; copper/zinc binding superoxide dismutase 243232..243750 Rhodopseudomonas palustris TIE-1 6407868 YP_001989261.1 CDS Rpal_0225 NC_011004.1 243816 245003 R PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: bja:blr0503 hypothetical protein; hypothetical protein complement(243816..245003) Rhodopseudomonas palustris TIE-1 6407869 YP_001989262.1 CDS Rpal_0226 NC_011004.1 245224 246336 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 245224..246336 Rhodopseudomonas palustris TIE-1 6407870 YP_001989263.1 CDS Rpal_0227 NC_011004.1 246494 246895 R KEGG: nha:Nham_3594 hypothetical protein; hypothetical protein complement(246494..246895) Rhodopseudomonas palustris TIE-1 6407871 YP_001989264.1 CDS Rpal_0228 NC_011004.1 247039 247848 R KEGG: bbt:BBta_0343 hypothetical protein; hypothetical protein complement(247039..247848) Rhodopseudomonas palustris TIE-1 6407872 YP_001989265.1 CDS Rpal_0229 NC_011004.1 247963 248997 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 247963..248997 Rhodopseudomonas palustris TIE-1 6407873 YP_001989266.1 CDS Rpal_0230 NC_011004.1 249133 249687 D PFAM: conserved hypothetical protein; KEGG: bra:BRADO0359 hypothetical protein; hypothetical protein 249133..249687 Rhodopseudomonas palustris TIE-1 6407874 YP_001989267.1 CDS Rpal_0231 NC_011004.1 249839 250483 R PFAM: carbonic anhydrase; KEGG: bbt:BBta_0346 carbonic anhydrase 2; carbonate dehydratase complement(249839..250483) Rhodopseudomonas palustris TIE-1 6407875 YP_001989268.1 CDS Rpal_0232 NC_011004.1 250664 251542 D PFAM: HpcH/HpaI aldolase; KEGG: bbt:BBta_0347 citrate lyase beta chain; citryl-CoA lyase 250664..251542 Rhodopseudomonas palustris TIE-1 6407876 YP_001989269.1 CDS Rpal_0233 NC_011004.1 251718 253409 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mag:amb3991 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(251718..253409) Rhodopseudomonas palustris TIE-1 6407877 YP_001989270.1 CDS leuD NC_011004.1 254159 254764 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(254159..254764) Rhodopseudomonas palustris TIE-1 6407878 YP_001989271.1 CDS Rpal_0235 NC_011004.1 254850 255263 R PFAM: protein of unknown function DUF1025; KEGG: bja:blr0494 hypothetical protein; hypothetical protein complement(254850..255263) Rhodopseudomonas palustris TIE-1 6407879 YP_001989272.1 CDS Rpal_0236 NC_011004.1 255369 255716 D KEGG: bbt:BBta_0353 exported protein of unknown function; hypothetical protein 255369..255716 Rhodopseudomonas palustris TIE-1 6407880 YP_001989273.1 CDS Rpal_0237 NC_011004.1 255948 256229 D KEGG: nwi:Nwi_2788 hypothetical protein; hypothetical protein 255948..256229 Rhodopseudomonas palustris TIE-1 6407881 YP_001989274.1 CDS Rpal_0238 NC_011004.1 256340 256651 D KEGG: nha:Nham_3587 hypothetical protein; hypothetical protein 256340..256651 Rhodopseudomonas palustris TIE-1 6407882 YP_001989275.1 CDS Rpal_0239 NC_011004.1 256772 257443 D KEGG: bra:BRADO0372 conserved hypothetical protein (partial); hypothetical protein 256772..257443 Rhodopseudomonas palustris TIE-1 6407883 YP_001989276.1 CDS Rpal_0240 NC_011004.1 257510 258919 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(257510..258919) Rhodopseudomonas palustris TIE-1 6407884 YP_001989277.1 CDS Rpal_0241 NC_011004.1 258996 259109 R KEGG: nha:Nham_3583 hypothetical protein; hypothetical protein complement(258996..259109) Rhodopseudomonas palustris TIE-1 6407885 YP_001989278.1 CDS rplS NC_011004.1 259229 259618 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(259229..259618) Rhodopseudomonas palustris TIE-1 6407886 YP_001989279.1 CDS trmD NC_011004.1 259732 260478 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(259732..260478) Rhodopseudomonas palustris TIE-1 6407887 YP_001989280.1 CDS rimM NC_011004.1 260621 261151 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(260621..261151) Rhodopseudomonas palustris TIE-1 6407888 YP_001989281.1 CDS rpsP NC_011004.1 261164 261484 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(261164..261484) Rhodopseudomonas palustris TIE-1 6407889 YP_001989282.1 CDS Rpal_0246 NC_011004.1 261654 263204 R KEGG: bbt:BBta_0368 signal recognition particle with 4.5 RNA, ffh family; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; signal recognition particle protein complement(261654..263204) Rhodopseudomonas palustris TIE-1 6407890 YP_001989283.1 CDS Rpal_0247 NC_011004.1 263657 263926 D KEGG: sus:Acid_1771 prevent-host-death family protein; prevent-host-death family protein 263657..263926 Rhodopseudomonas palustris TIE-1 6407891 YP_001989284.1 CDS Rpal_0248 NC_011004.1 264152 265213 D PFAM: beta-lactamase domain protein; KEGG: bra:BRADO0380 metallo-hydrolase/oxidoreductase; beta-lactamase domain-containing protein 264152..265213 Rhodopseudomonas palustris TIE-1 6407892 YP_001989285.1 CDS Rpal_0249 NC_011004.1 265223 265921 R PFAM: protein of unknown function DUF541; KEGG: nha:Nham_3577 protein of unknown function DUF541; hypothetical protein complement(265223..265921) Rhodopseudomonas palustris TIE-1 6407893 YP_001989286.1 CDS Rpal_0250 NC_011004.1 265918 266700 R PFAM: transcription activator effector binding; KEGG: bja:blr0478 hypothetical protein; transcription activator effector binding complement(265918..266700) Rhodopseudomonas palustris TIE-1 6407894 YP_001989287.1 CDS dapF NC_011004.1 266937 267818 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 266937..267818 Rhodopseudomonas palustris TIE-1 6407895 YP_001989288.1 CDS Rpal_0252 NC_011004.1 267818 269089 D KEGG: bra:BRADO0384 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein 267818..269089 Rhodopseudomonas palustris TIE-1 6407896 YP_001989289.1 CDS Rpal_0253 NC_011004.1 269099 269761 R KEGG: xau:Xaut_1107 hypothetical protein; hypothetical protein complement(269099..269761) Rhodopseudomonas palustris TIE-1 6407897 YP_001989290.1 CDS Rpal_0254 NC_011004.1 269947 270360 R PFAM: protein of unknown function DUF55; KEGG: bja:blr0569 hypothetical protein; hypothetical protein complement(269947..270360) Rhodopseudomonas palustris TIE-1 6407898 YP_001989291.1 CDS gpsA NC_011004.1 270363 271352 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(270363..271352) Rhodopseudomonas palustris TIE-1 6407899 YP_001989292.1 CDS Rpal_0256 NC_011004.1 271388 272479 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(271388..272479) Rhodopseudomonas palustris TIE-1 6407900 YP_001989293.1 CDS Rpal_0257 NC_011004.1 272704 273450 D PFAM: uroporphyrinogen III synthase HEM4; KEGG: bja:bll0566 uroporphyrinogen III synthase; uroporphyrinogen III synthase HEM4 272704..273450 Rhodopseudomonas palustris TIE-1 6407901 YP_001989294.1 CDS Rpal_0258 NC_011004.1 273502 274911 D KEGG: nha:Nham_0564 hypothetical protein; hypothetical protein 273502..274911 Rhodopseudomonas palustris TIE-1 6407902 YP_001989295.1 CDS Rpal_0259 NC_011004.1 274920 276617 D PFAM: HemY domain protein; KEGG: bja:bll0564 hypothetical protein; HemY domain-containing protein 274920..276617 Rhodopseudomonas palustris TIE-1 6407903 YP_001989296.1 CDS Rpal_0260 NC_011004.1 277309 278091 R PFAM: histidine kinase HAMP region domain protein; KEGG: atc:AGR_C_4040 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(277309..278091) Rhodopseudomonas palustris TIE-1 6407905 YP_001989297.1 CDS Rpal_0261 NC_011004.1 278933 279724 D KEGG: mex:Mext_4818 cobalamin B12-binding; cobalamin B12-binding 278933..279724 Rhodopseudomonas palustris TIE-1 6407906 YP_001989298.1 CDS Rpal_0262 NC_011004.1 279898 280983 D KEGG: nwi:Nwi_2399 hypothetical protein; hypothetical protein 279898..280983 Rhodopseudomonas palustris TIE-1 6407907 YP_001989299.1 CDS Rpal_0263 NC_011004.1 281011 282309 R PFAM: ribulose bisphosphate carboxylase large chain; KEGG: plt:Plut_0412 ribulose-bisphosphate carboxylase; RuBisCO-like protein complement(281011..282309) Rhodopseudomonas palustris TIE-1 6407908 YP_001989300.1 CDS Rpal_0264 NC_011004.1 282424 282846 R PFAM: protein of unknown function UPF0047; KEGG: cph:Cpha266_0672 protein of unknown function UPF0047; hypothetical protein complement(282424..282846) Rhodopseudomonas palustris TIE-1 6407909 YP_001989301.1 CDS Rpal_0265 NC_011004.1 283072 285009 D PFAM: acyltransferase 3; KEGG: bte:BTH_I1858 acyltransferase family protein; acyltransferase 3 283072..285009 Rhodopseudomonas palustris TIE-1 6407910 YP_001989302.1 CDS Rpal_0266 NC_011004.1 285062 286228 R KEGG: fps:FP1412 probable sugar O-acetyltransferase precursor; hypothetical protein complement(285062..286228) Rhodopseudomonas palustris TIE-1 6407911 YP_001989303.1 CDS Rpal_0267 NC_011004.1 286231 287643 R PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: mag:amb1065 predicted membrane protein; membrane bound O-acyl transferase MBOAT family protein complement(286231..287643) Rhodopseudomonas palustris TIE-1 6407912 YP_001989304.1 CDS Rpal_0268 NC_011004.1 288238 289158 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: bra:BRADO0321 thioredoxin; thioredoxin 288238..289158 Rhodopseudomonas palustris TIE-1 6407914 YP_001989305.1 CDS Rpal_0269 NC_011004.1 289185 289862 D PFAM: peptidase S16 lon domain protein; KEGG: bja:blr0595 hypothetical protein; peptidase S16 lon domain-containing protein 289185..289862 Rhodopseudomonas palustris TIE-1 6407915 YP_001989306.1 CDS Rpal_0270 NC_011004.1 289952 290149 D PFAM: protein of unknown function DUF343; KEGG: nha:Nham_0083 protein of unknown function DUF343; hypothetical protein 289952..290149 Rhodopseudomonas palustris TIE-1 6407916 YP_001989307.1 CDS Rpal_0271 NC_011004.1 290285 291505 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: nwi:Nwi_0079 2-octaprenyl-6-methoxyphenyl hydroxylase; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(290285..291505) Rhodopseudomonas palustris TIE-1 6407917 YP_001989308.1 CDS Rpal_0272 NC_011004.1 291745 292620 D KEGG: bja:blr0604 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 291745..292620 Rhodopseudomonas palustris TIE-1 6407918 YP_001989309.1 CDS Rpal_0273 NC_011004.1 292654 293487 R KEGG: scl:sce3213 hypothetical protein; hypothetical protein complement(292654..293487) Rhodopseudomonas palustris TIE-1 6407919 YP_001989310.1 CDS Rpal_0274 NC_011004.1 293576 294157 D PFAM: regulatory protein TetR; KEGG: sal:Sala_0735 transcriptional regulator, TetR family; TetR family transcriptional regulator 293576..294157 Rhodopseudomonas palustris TIE-1 6407920 YP_001989311.1 CDS Rpal_0275 NC_011004.1 294303 294641 D PFAM: nitrogen regulatory protein P-II; KEGG: bbt:BBta_0295 regulatory protein for nitrogen assimilation, regulates GlnL , GlnE , and AmtB; nitrogen regulatory protein P-II 294303..294641 Rhodopseudomonas palustris TIE-1 6407921 YP_001989312.1 CDS Rpal_0276 NC_011004.1 294716 296047 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: bbt:BBta_0294 ammonium transport protein (Amt family); ammonium transporter 294716..296047 Rhodopseudomonas palustris TIE-1 6407922 YP_001989313.1 CDS Rpal_0277 NC_011004.1 296357 296695 D PFAM: nitrogen regulatory protein P-II; KEGG: bja:blr0612 nitrogen regulatory protein PII; nitrogen regulatory protein P-II 296357..296695 Rhodopseudomonas palustris TIE-1 6407923 YP_001989314.1 CDS Rpal_0278 NC_011004.1 296733 298175 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: bja:blr0613 ammonium transporter; ammonium transporter 296733..298175 Rhodopseudomonas palustris TIE-1 6407924 YP_001989315.1 CDS Rpal_0279 NC_011004.1 298294 298641 D PFAM: DNA polymerase beta domain protein region; KEGG: cak:Caul_1178 DNA polymerase beta domain protein region; DNA polymerase beta domain-containing protein 298294..298641 Rhodopseudomonas palustris TIE-1 6407925 YP_001989316.1 CDS Rpal_0280 NC_011004.1 298743 298988 D PFAM: protein of unknown function DUF86; KEGG: mrd:Mrad2831_3537 protein of unknown function DUF86; hypothetical protein 298743..298988 Rhodopseudomonas palustris TIE-1 6407926 YP_001989317.1 CDS Rpal_0281 NC_011004.1 299111 300337 D PFAM: aminotransferase class I and II; KEGG: nha:Nham_0089 aminotransferase, class I and II; class I and II aminotransferase 299111..300337 Rhodopseudomonas palustris TIE-1 6407927 YP_001989318.1 CDS Rpal_0282 NC_011004.1 300351 302819 D PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: bja:blr0616 cell division protein; cell division protein FtsK 300351..302819 Rhodopseudomonas palustris TIE-1 6407928 YP_001989319.1 CDS Rpal_0283 NC_011004.1 302837 303778 D PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: bbt:BBta_0134 exported protein of unknown function; outer membrane lipoprotein carrier protein LolA 302837..303778 Rhodopseudomonas palustris TIE-1 6407929 YP_001989320.1 CDS Rpal_0284 NC_011004.1 304067 304879 D TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bja:blr0618 exodeoxyribonuclease III; exodeoxyribonuclease III Xth 304067..304879 Rhodopseudomonas palustris TIE-1 6407930 YP_001989321.1 CDS Rpal_0285 NC_011004.1 304931 305380 R PFAM: cyclic nucleotide-binding; KEGG: bja:bll0619 hypothetical protein; cyclic nucleotide-binding protein complement(304931..305380) Rhodopseudomonas palustris TIE-1 6407931 YP_001989322.1 CDS Rpal_0286 NC_011004.1 305420 306106 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:bll0620 two-component response regulator; winged helix family two component transcriptional regulator complement(305420..306106) Rhodopseudomonas palustris TIE-1 6407932 YP_001989323.1 CDS Rpal_0287 NC_011004.1 306271 306834 D KEGG: nha:Nham_0095 hypothetical protein; hypothetical protein 306271..306834 Rhodopseudomonas palustris TIE-1 6407933 YP_001989324.1 CDS Rpal_0288 NC_011004.1 306916 307575 R PFAM: alanine racemase domain protein; KEGG: bbt:BBta_0174 exported protein of unknown function; alanine racemase domain-containing protein complement(306916..307575) Rhodopseudomonas palustris TIE-1 6407934 YP_001989325.1 CDS Rpal_0289 NC_011004.1 307746 309419 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: bja:blr0624 hypothetical protein; diguanylate cyclase 307746..309419 Rhodopseudomonas palustris TIE-1 6407935 YP_001989326.1 CDS leuS NC_011004.1 309625 312255 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 309625..312255 Rhodopseudomonas palustris TIE-1 6407936 YP_001989327.1 CDS Rpal_0291 NC_011004.1 312242 312805 D KEGG: nha:Nham_0099 hypothetical protein; hypothetical protein 312242..312805 Rhodopseudomonas palustris TIE-1 6407937 YP_001989328.1 CDS holA NC_011004.1 312862 313893 D required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 312862..313893 Rhodopseudomonas palustris TIE-1 6407938 YP_001989329.1 CDS Rpal_0293 NC_011004.1 314155 315045 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: nwi:Nwi_0094 ParB-like partition protein; parB-like partition protein complement(314155..315045) Rhodopseudomonas palustris TIE-1 6407939 YP_001989330.1 CDS Rpal_0294 NC_011004.1 315218 316072 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: nha:Nham_0103 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase complement(315218..316072) Rhodopseudomonas palustris TIE-1 6407940 YP_001989331.1 CDS gidB NC_011004.1 316100 316771 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(316100..316771) Rhodopseudomonas palustris TIE-1 6407941 YP_001989332.1 CDS Rpal_0296 NC_011004.1 316944 318812 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(316944..318812) Rhodopseudomonas palustris TIE-1 6407942 YP_001989333.1 CDS trmE NC_011004.1 318978 320303 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(318978..320303) Rhodopseudomonas palustris TIE-1 6407943 YP_001989334.1 CDS rho NC_011004.1 320391 321656 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(320391..321656) Rhodopseudomonas palustris TIE-1 6407944 YP_001989335.1 CDS Rpal_0299 NC_011004.1 321916 322356 R PFAM: conserved hypothetical protein; KEGG: bra:BRADO0198 hypothetical protein; hypothetical protein complement(321916..322356) Rhodopseudomonas palustris TIE-1 6407945 YP_001989336.1 CDS Rpal_0300 NC_011004.1 322811 323650 D PFAM: protein of unknown function DUF299; KEGG: bbt:BBta_0161 hypothetical protein; hypothetical protein 322811..323650 Rhodopseudomonas palustris TIE-1 6407946 YP_001989337.1 CDS Rpal_0301 NC_011004.1 323647 324255 D PFAM: Maf family protein; KEGG: bja:blr0638 Maf-like protein; Maf family protein 323647..324255 Rhodopseudomonas palustris TIE-1 6407947 YP_001989338.1 CDS coaE NC_011004.1 324352 324951 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 324352..324951 Rhodopseudomonas palustris TIE-1 6407948 YP_001989339.1 CDS Rpal_0303 NC_011004.1 324987 325685 D KEGG: bja:blr0640 DNA polymerase III epsilon chain; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; DNA polymerase III subunit epsilon 324987..325685 Rhodopseudomonas palustris TIE-1 6407949 YP_001989340.1 CDS Rpal_0304 NC_011004.1 325765 326238 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(325765..326238) Rhodopseudomonas palustris TIE-1 6407950 YP_001989341.1 CDS Rpal_0305 NC_011004.1 326702 327409 D PFAM: import inner membrane translocase subunit Tim44; KEGG: bja:blr0642 hypothetical protein; import inner membrane translocase subunit Tim44 326702..327409 Rhodopseudomonas palustris TIE-1 6407951 YP_001989342.1 CDS Rpal_0306 NC_011004.1 327387 328880 D PFAM: MltA domain protein; 3D domain protein; KEGG: bbt:BBta_0155 membrane-bound lytic murein transglycosylase; MltA domain-containing protein 327387..328880 Rhodopseudomonas palustris TIE-1 6407952 YP_001989343.1 CDS Rpal_0307 NC_011004.1 328886 329470 D PFAM: Smr protein/MutS2; KEGG: bja:blr0644 hypothetical protein; Smr protein/MutS2 328886..329470 Rhodopseudomonas palustris TIE-1 6407953 YP_001989344.1 CDS hslU NC_011004.1 329807 331108 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(329807..331108) Rhodopseudomonas palustris TIE-1 6407954 YP_001989345.1 CDS Rpal_0309 NC_011004.1 331150 331761 R KEGG: bbt:BBta_0150 hypothetical protein; hypothetical protein complement(331150..331761) Rhodopseudomonas palustris TIE-1 6407955 YP_001989346.1 CDS Rpal_0310 NC_011004.1 331758 332327 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(331758..332327) Rhodopseudomonas palustris TIE-1 6407956 YP_001989347.1 CDS hisB NC_011004.1 332515 333108 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 332515..333108 Rhodopseudomonas palustris TIE-1 6407957 YP_001989348.1 CDS Rpal_0312 NC_011004.1 333136 333657 D KEGG: nha:Nham_0123 hypothetical protein; hypothetical protein 333136..333657 Rhodopseudomonas palustris TIE-1 6407958 YP_001989349.1 CDS hisH NC_011004.1 333654 334304 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 333654..334304 Rhodopseudomonas palustris TIE-1 6407959 YP_001989350.1 CDS Rpal_0314 NC_011004.1 334301 335038 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 334301..335038 Rhodopseudomonas palustris TIE-1 6407960 YP_001989351.1 CDS Rpal_0315 NC_011004.1 335049 335816 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 335049..335816 Rhodopseudomonas palustris TIE-1 6407961 YP_001989352.1 CDS hisE NC_011004.1 335870 336193 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 335870..336193 Rhodopseudomonas palustris TIE-1 6407962 YP_001989353.1 CDS Rpal_0317 NC_011004.1 336268 337224 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 336268..337224 Rhodopseudomonas palustris TIE-1 6407963 YP_001989354.1 CDS Rpal_0318 NC_011004.1 337371 338321 R KEGG: azc:AZC_0076 hemolysin; hemolysin complement(337371..338321) Rhodopseudomonas palustris TIE-1 6407964 YP_001989355.1 CDS Rpal_0319 NC_011004.1 338482 340392 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bja:bll0659 two-component hybrid sensor and regulator; integral membrane sensor hybrid histidine kinase complement(338482..340392) Rhodopseudomonas palustris TIE-1 6407965 YP_001989356.1 CDS Rpal_0320 NC_011004.1 340519 342057 R KEGG: bja:bll0661 hypothetical protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase AAA; SMART: ATPase AAA; Mg chelatase subunit ChlI complement(340519..342057) Rhodopseudomonas palustris TIE-1 6407966 YP_001989357.1 CDS Rpal_0321 NC_011004.1 342157 342381 R hypothetical protein complement(342157..342381) Rhodopseudomonas palustris TIE-1 6407967 YP_001989358.1 CDS Rpal_0322 NC_011004.1 342378 343034 R KEGG: bra:BRADO0941 autoinducer (acylhomoserine lactone) synthase; autoinducer (acylhomoserine lactone) synthase complement(342378..343034) Rhodopseudomonas palustris TIE-1 6407968 YP_001989359.1 CDS Rpal_0323 NC_011004.1 343120 343851 R PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: bbt:BBta_7112 N-acyl homoserine lactone transcriptional regulator, LuxR-like protein; LuxR family transcriptional regulator complement(343120..343851) Rhodopseudomonas palustris TIE-1 6407969 YP_001989360.1 CDS Rpal_0324 NC_011004.1 344088 345029 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(344088..345029) Rhodopseudomonas palustris TIE-1 6407970 YP_001989361.1 CDS Rpal_0325 NC_011004.1 345102 345494 R PFAM: protein of unknown function UPF0102; KEGG: bra:BRADO0179 hypothetical protein; hypothetical protein complement(345102..345494) Rhodopseudomonas palustris TIE-1 6407971 YP_001989362.1 CDS Rpal_0326 NC_011004.1 345481 346437 R PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nha:Nham_0147 protein of unknown function UPF0011; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase complement(345481..346437) Rhodopseudomonas palustris TIE-1 6407972 YP_001989363.1 CDS Rpal_0327 NC_011004.1 346656 347855 D KEGG: nha:Nham_0148 extracellular ligand-binding receptor; extracellular ligand-binding receptor 346656..347855 Rhodopseudomonas palustris TIE-1 6407973 YP_001989364.1 CDS Rpal_0328 NC_011004.1 347873 348235 R PFAM: helix-turn-helix HxlR type; KEGG: pla:Plav_3490 transcriptional regulator, HxlR family; HxlR family transcriptional regulator complement(347873..348235) Rhodopseudomonas palustris TIE-1 6407974 YP_001989365.1 CDS Rpal_0329 NC_011004.1 348306 348635 D KEGG: pde:Pden_4576 hypothetical protein; hypothetical protein 348306..348635 Rhodopseudomonas palustris TIE-1 6407975 YP_001989366.1 CDS Rpal_0330 NC_011004.1 348640 349797 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(348640..349797) Rhodopseudomonas palustris TIE-1 6407976 YP_001989367.1 CDS Rpal_0331 NC_011004.1 349787 350419 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(349787..350419) Rhodopseudomonas palustris TIE-1 6407977 YP_001989368.1 CDS rph NC_011004.1 350471 351184 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(350471..351184) Rhodopseudomonas palustris TIE-1 6407978 YP_001989369.1 CDS hrcA NC_011004.1 351340 352428 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 351340..352428 Rhodopseudomonas palustris TIE-1 6407979 YP_001989370.1 CDS Rpal_0334 NC_011004.1 352519 353142 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 352519..353142 Rhodopseudomonas palustris TIE-1 6407980 YP_001989371.1 CDS Rpal_0335 NC_011004.1 353249 354190 R KEGG: bja:bll0679 hypothetical protein; hypothetical protein complement(353249..354190) Rhodopseudomonas palustris TIE-1 6407981 YP_001989372.1 CDS dnaK NC_011004.1 354525 356420 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 354525..356420 Rhodopseudomonas palustris TIE-1 6407982 YP_001989373.1 CDS Rpal_0337 NC_011004.1 356635 357774 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 356635..357774 Rhodopseudomonas palustris TIE-1 6407983 YP_001989374.1 CDS Rpal_0338 NC_011004.1 357868 358473 D SMART: ribosomal RNA adenine methylase transferase; KEGG: bja:blr0681 phospholipid N-methyltransferase; ribosomal RNA adenine methylase transferase 357868..358473 Rhodopseudomonas palustris TIE-1 6407984 YP_001989375.1 CDS Rpal_0339 NC_011004.1 358575 359156 D PFAM: NADPH-dependent FMN reductase; KEGG: bja:blr0682 oxidoreductase; NADPH-dependent FMN reductase 358575..359156 Rhodopseudomonas palustris TIE-1 6407985 YP_001989376.1 CDS Rpal_0340 NC_011004.1 359164 359877 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 359164..359877 Rhodopseudomonas palustris TIE-1 6407986 YP_001989377.1 CDS Rpal_0341 NC_011004.1 359903 360211 D PFAM: protein of unknown function DUF1330; KEGG: bra:BRADO0159 conserved hypothetical protein; dimeric alpha-beta barrel domain; hypothetical protein 359903..360211 Rhodopseudomonas palustris TIE-1 6407987 YP_001989378.1 CDS Rpal_0342 NC_011004.1 360308 361123 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 360308..361123 Rhodopseudomonas palustris TIE-1 6407988 YP_001989379.1 CDS Rpal_0343 NC_011004.1 361203 362717 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(361203..362717) Rhodopseudomonas palustris TIE-1 6407989 YP_001989380.1 CDS Rpal_0344 NC_011004.1 362809 363741 R TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: bja:bll0687 transcriptional regulatory protein; AraC family transcriptional regulator complement(362809..363741) Rhodopseudomonas palustris TIE-1 6407990 YP_001989381.1 CDS Rpal_0345 NC_011004.1 363756 364271 R KEGG: bbt:BBta_0200 membrane protein of unknown function; hypothetical protein complement(363756..364271) Rhodopseudomonas palustris TIE-1 6407991 YP_001989382.1 CDS Rpal_0346 NC_011004.1 364294 365079 D KEGG: bra:BRADO0152 endonuclease III DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 364294..365079 Rhodopseudomonas palustris TIE-1 6407992 YP_001989383.1 CDS Rpal_0347 NC_011004.1 365195 366760 R PFAM: peptidase S10 serine carboxypeptidase; KEGG: bja:bll5514 hypothetical protein; peptidase S10 serine carboxypeptidase complement(365195..366760) Rhodopseudomonas palustris TIE-1 6407993 YP_001989384.1 CDS Rpal_0348 NC_011004.1 366889 367857 R TIGRFAM: magnesium chelatase accessory protein; PFAM: alpha/beta hydrolase fold; KEGG: bbt:BBta_6446 alpha/beta hydrolase, protoporphyrin IX magnesium chelatase BchO-like protein; magnesium chelatase accessory protein complement(366889..367857) Rhodopseudomonas palustris TIE-1 6407994 YP_001989385.1 CDS Rpal_0349 NC_011004.1 368431 369174 R role in sulfur assimilation; CysZ-like protein complement(368431..369174) Rhodopseudomonas palustris TIE-1 6407995 YP_001989386.1 CDS aceK NC_011004.1 369262 371094 R catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein complement(369262..371094) Rhodopseudomonas palustris TIE-1 6407996 YP_001989387.1 CDS Rpal_0351 NC_011004.1 371430 372281 R PFAM: alpha/beta hydrolase fold; KEGG: mbn:Mboo_0148 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(371430..372281) Rhodopseudomonas palustris TIE-1 6407997 YP_001989388.1 CDS Rpal_0352 NC_011004.1 372492 373664 D TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: ade:Adeh_3442 DNA-cytosine methyltransferase; DNA-cytosine methyltransferase 372492..373664 Rhodopseudomonas palustris TIE-1 6407998 YP_001989389.1 CDS Rpal_0353 NC_011004.1 373661 374077 D TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: ppw:PputW619_0683 DNA mismatch endonuclease Vsr; DNA mismatch endonuclease Vsr 373661..374077 Rhodopseudomonas palustris TIE-1 6407999 YP_001989390.1 CDS Rpal_0354 NC_011004.1 374082 374903 D KEGG: ade:Adeh_3444 hypothetical protein; hypothetical protein 374082..374903 Rhodopseudomonas palustris TIE-1 6408000 YP_001989391.1 CDS Rpal_0355 NC_011004.1 374910 376721 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(374910..376721) Rhodopseudomonas palustris TIE-1 6408001 YP_001989392.1 CDS Rpal_0356 NC_011004.1 376866 378404 D KEGG: bra:BRADO0839 hypothetical protein; hypothetical protein 376866..378404 Rhodopseudomonas palustris TIE-1 6408002 YP_001989393.1 CDS Rpal_0357 NC_011004.1 378456 378788 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: nha:Nham_0439 HPrNtr; phosphotransferase system, phosphocarrier protein HPr complement(378456..378788) Rhodopseudomonas palustris TIE-1 6408003 YP_001989394.1 CDS Rpal_0358 NC_011004.1 378785 379186 R PFAM: PTS system fructose subfamily IIA component; KEGG: nha:Nham_0440 PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA complement(378785..379186) Rhodopseudomonas palustris TIE-1 6408004 YP_001989395.1 CDS Rpal_0359 NC_011004.1 379374 379841 R KEGG: nha:Nham_0441 HPr kinase; HPr kinase complement(379374..379841) Rhodopseudomonas palustris TIE-1 6408005 YP_001989396.1 CDS Rpal_0360 NC_011004.1 379838 381583 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: nha:Nham_0442 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(379838..381583) Rhodopseudomonas palustris TIE-1 6408006 YP_001989397.1 CDS Rpal_0361 NC_011004.1 381746 382447 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:blr8144 two-component response regulator; winged helix family two component transcriptional regulator complement(381746..382447) Rhodopseudomonas palustris TIE-1 6408007 YP_001989398.1 CDS Rpal_0362 NC_011004.1 382681 383415 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bja:bll8143 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 382681..383415 Rhodopseudomonas palustris TIE-1 6408008 YP_001989399.1 CDS Rpal_0363 NC_011004.1 383604 385217 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 383604..385217 Rhodopseudomonas palustris TIE-1 6408009 YP_001989400.1 CDS Rpal_0364 NC_011004.1 385465 388350 D KEGG: sbn:Sbal195_0330 RNA binding S1 domain protein; hypothetical protein 385465..388350 Rhodopseudomonas palustris TIE-1 6408010 YP_001989401.1 CDS Rpal_0365 NC_011004.1 388605 389480 R KEGG: azo:azo3831 conserved hypothetical secreted protein; hypothetical protein complement(388605..389480) Rhodopseudomonas palustris TIE-1 6408011 YP_001989402.1 CDS Rpal_0366 NC_011004.1 389770 390645 D PFAM: beta-lactamase; KEGG: nha:Nham_0446 beta-lactamase; beta-lactamase 389770..390645 Rhodopseudomonas palustris TIE-1 6408012 YP_001989403.1 CDS Rpal_0367 NC_011004.1 390670 391788 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mmr:Mmar10_0829 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(390670..391788) Rhodopseudomonas palustris TIE-1 6408013 YP_001989404.1 CDS Rpal_0368 NC_011004.1 391867 392670 R PFAM: protein of unknown function DUF81; KEGG: xau:Xaut_2893 protein of unknown function DUF81; hypothetical protein complement(391867..392670) Rhodopseudomonas palustris TIE-1 6408014 YP_001989405.1 CDS Rpal_0369 NC_011004.1 392764 393660 D PFAM: beta-lactamase domain protein; KEGG: pla:Plav_1618 beta-lactamase domain protein; beta-lactamase domain-containing protein 392764..393660 Rhodopseudomonas palustris TIE-1 6408015 YP_001989406.1 CDS Rpal_0370 NC_011004.1 393759 394121 D KEGG: bbt:BBta_5525 hypothetical protein; hypothetical protein 393759..394121 Rhodopseudomonas palustris TIE-1 6408016 YP_001989407.1 CDS Rpal_0371 NC_011004.1 394333 395232 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(394333..395232) Rhodopseudomonas palustris TIE-1 6408017 YP_001989408.1 CDS Rpal_0372 NC_011004.1 395454 396458 R KEGG: bja:blr7336 pseudouridine synthase homolog; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(395454..396458) Rhodopseudomonas palustris TIE-1 6408018 YP_001989409.1 CDS Rpal_0373 NC_011004.1 396501 396836 D KEGG: bja:bll7335 hypothetical protein; hypothetical protein 396501..396836 Rhodopseudomonas palustris TIE-1 6408019 YP_001989410.1 CDS Rpal_0374 NC_011004.1 397224 399746 R KEGG: pin:Ping_3328 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(397224..399746) Rhodopseudomonas palustris TIE-1 6408021 YP_001989411.1 CDS Rpal_0375 NC_011004.1 399947 401131 R KEGG: mgm:Mmc1_0771 methionine gamma-lyase; TIGRFAM: methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; methionine gamma-lyase complement(399947..401131) Rhodopseudomonas palustris TIE-1 6408022 YP_001989412.1 CDS Rpal_0376 NC_011004.1 401242 401727 D PFAM: regulatory protein AsnC/Lrp family; KEGG: oan:Oant_0505 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 401242..401727 Rhodopseudomonas palustris TIE-1 6408023 YP_001989413.1 CDS Rpal_0377 NC_011004.1 401728 402165 R TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: mlo:mll6589 thioredoxin; thioredoxin complement(401728..402165) Rhodopseudomonas palustris TIE-1 6408024 YP_001989414.1 CDS Rpal_0378 NC_011004.1 402305 403288 R TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr6070 alcohol dehydrogenase; zinc-binding alcohol dehydrogenase complement(402305..403288) Rhodopseudomonas palustris TIE-1 6408025 YP_001989415.1 CDS Rpal_0379 NC_011004.1 403362 403583 R PFAM: ChaB family protein; KEGG: tcx:Tcr_2071 ChaB; ChaB family protein complement(403362..403583) Rhodopseudomonas palustris TIE-1 6408026 YP_001989416.1 CDS Rpal_0380 NC_011004.1 403814 404536 D KEGG: nha:Nham_1929 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 403814..404536 Rhodopseudomonas palustris TIE-1 6408027 YP_001989417.1 CDS Rpal_0381 NC_011004.1 404689 405513 D PFAM: UspA domain protein; KEGG: nha:Nham_1926 UspA; UspA domain-containing protein 404689..405513 Rhodopseudomonas palustris TIE-1 6408028 YP_001989418.1 CDS Rpal_0382 NC_011004.1 405710 406990 R PFAM: glycoside hydrolase family 4; KEGG: bra:BRADO2867 alpha-galactosidase (melibiase); glycoside hydrolase family protein complement(405710..406990) Rhodopseudomonas palustris TIE-1 6408029 YP_001989419.1 CDS Rpal_0383 NC_011004.1 407214 408152 D KEGG: bbt:BBta_6479 carbohydrate kinase PfkB family; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 407214..408152 Rhodopseudomonas palustris TIE-1 6408030 YP_001989420.1 CDS Rpal_0384 NC_011004.1 408267 410579 D TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: bbt:BBta_3664 oxidoreductase alpha (molybdopterin) subunit; oxidoreductase alpha (molybdopterin) subunit 408267..410579 Rhodopseudomonas palustris TIE-1 6408031 YP_001989421.1 CDS glgC NC_011004.1 410851 412113 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 410851..412113 Rhodopseudomonas palustris TIE-1 6408032 YP_001989422.1 CDS Rpal_0386 NC_011004.1 412110 413561 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 412110..413561 Rhodopseudomonas palustris TIE-1 6408033 YP_001989423.1 CDS Rpal_0387 NC_011004.1 413707 414507 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 413707..414507 Rhodopseudomonas palustris TIE-1 6408034 YP_001989424.1 CDS Rpal_0388 NC_011004.1 414504 415076 D PFAM: protein of unknown function DUF1566; KEGG: pat:Patl_3291 protein of unknown function DUF1566; hypothetical protein 414504..415076 Rhodopseudomonas palustris TIE-1 6408035 YP_001989425.1 CDS radC NC_011004.1 415092 415811 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(415092..415811) Rhodopseudomonas palustris TIE-1 6408036 YP_001989426.1 CDS Rpal_0390 NC_011004.1 415906 416148 R KEGG: bbt:BBta_5458 hypothetical protein; hypothetical protein complement(415906..416148) Rhodopseudomonas palustris TIE-1 6408037 YP_001989427.1 CDS Rpal_0391 NC_011004.1 416255 417250 D TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: nha:Nham_0450 hypothetical protein; Ku protein 416255..417250 Rhodopseudomonas palustris TIE-1 6408038 YP_001989428.1 CDS Rpal_0392 NC_011004.1 417363 418187 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: nha:Nham_0431 methionine aminopeptidase, type I; methionine aminopeptidase complement(417363..418187) Rhodopseudomonas palustris TIE-1 6408039 YP_001989429.1 CDS Rpal_0393 NC_011004.1 418383 420176 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 418383..420176 Rhodopseudomonas palustris TIE-1 6408040 YP_001989430.1 CDS mepA NC_011004.1 420201 421163 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase complement(420201..421163) Rhodopseudomonas palustris TIE-1 6408041 YP_001989431.1 CDS Rpal_0395 NC_011004.1 421544 423781 D KEGG: bja:bll8156 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 421544..423781 Rhodopseudomonas palustris TIE-1 6408042 YP_001989432.1 CDS Rpal_0396 NC_011004.1 423796 425553 R PFAM: Alkaline phosphatase; KEGG: rru:Rru_A1289 alkaline phosphatase; alkaline phosphatase complement(423796..425553) Rhodopseudomonas palustris TIE-1 6408043 YP_001989433.1 CDS Rpal_0397 NC_011004.1 425794 427131 R catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase complement(425794..427131) Rhodopseudomonas palustris TIE-1 6408044 YP_001989434.1 CDS Rpal_0398 NC_011004.1 427232 428011 R PFAM: phosphoesterase PA-phosphatase related; KEGG: nwi:Nwi_2804 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(427232..428011) Rhodopseudomonas palustris TIE-1 6408045 YP_001989435.1 CDS Rpal_0399 NC_011004.1 428008 428508 R KEGG: bra:BRADO0245 hypothetical protein; hypothetical protein complement(428008..428508) Rhodopseudomonas palustris TIE-1 6408046 YP_001989436.1 CDS Rpal_0400 NC_011004.1 428508 429101 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: pfl:PFL_2689 metal-dependent phosphohydrolase; metal dependent phosphohydrolase complement(428508..429101) Rhodopseudomonas palustris TIE-1 6408047 YP_001989437.1 CDS Rpal_0401 NC_011004.1 429106 430305 R TIGRFAM: radical SAM enzyme, Cfr family; PFAM: radical SAM domain protein; KEGG: bbt:BBta_0241 pyruvate formate lyase activating enzyme 2 (YfgB); radical SAM enzyme, Cfr family complement(429106..430305) Rhodopseudomonas palustris TIE-1 6408048 YP_001989438.1 CDS Rpal_0402 NC_011004.1 430492 431067 R KEGG: bja:bll0526 hypothetical protein; hypothetical protein complement(430492..431067) Rhodopseudomonas palustris TIE-1 6408049 YP_001989439.1 CDS Rpal_0403 NC_011004.1 431221 432057 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll0527 hypothetical oxidoreductase; short-chain dehydrogenase/reductase SDR complement(431221..432057) Rhodopseudomonas palustris TIE-1 6408050 YP_001989440.1 CDS Rpal_0404 NC_011004.1 432289 433263 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_0243 quinone oxidoreductase (NADPH) and Zn-dependent alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein 432289..433263 Rhodopseudomonas palustris TIE-1 6408051 YP_001989441.1 CDS Rpal_0405 NC_011004.1 433392 435527 R PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bbt:BBta_7528 phytoene dehydrogenase and related proteins; amine oxidase complement(433392..435527) Rhodopseudomonas palustris TIE-1 6408052 YP_001989442.1 CDS Rpal_0406 NC_011004.1 435666 436286 D PFAM: regulatory protein TetR; KEGG: ade:Adeh_2875 transcriptional regulator, TetR family; TetR family transcriptional regulator 435666..436286 Rhodopseudomonas palustris TIE-1 6408053 YP_001989443.1 CDS Rpal_0407 NC_011004.1 436304 436678 R PFAM: protein of unknown function DUF1232; KEGG: bja:bll0531 hypothetical protein; hypothetical protein complement(436304..436678) Rhodopseudomonas palustris TIE-1 6408054 YP_001989444.1 CDS phhB NC_011004.1 436761 437063 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(436761..437063) Rhodopseudomonas palustris TIE-1 6408055 YP_001989445.1 CDS Rpal_0409 NC_011004.1 437263 438651 D TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bja:blr0533 hypothetical protein; TRAP transporter solute receptor, TAXI family 437263..438651 Rhodopseudomonas palustris TIE-1 6408056 YP_001989446.1 CDS Rpal_0410 NC_011004.1 438655 440100 R PFAM: PepSY-associated TM helix domain protein; KEGG: azc:AZC_2703 hypothetical protein; PepSY-associated TM helix domain-containing protein complement(438655..440100) Rhodopseudomonas palustris TIE-1 6408057 YP_001989447.1 CDS Rpal_0411 NC_011004.1 440105 442381 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azc:AZC_2702 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(440105..442381) Rhodopseudomonas palustris TIE-1 6408058 YP_001989448.1 CDS Rpal_0412 NC_011004.1 443110 444933 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: bra:BRADO0265 GTP-binding protein TypA/BipA (tyrosine phosphorylated protein A); GTP-binding protein TypA 443110..444933 Rhodopseudomonas palustris TIE-1 6408059 YP_001989449.1 CDS Rpal_0413 NC_011004.1 445043 446311 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bja:blr0541 hypothetical protein; amine oxidase 445043..446311 Rhodopseudomonas palustris TIE-1 6408060 YP_001989450.1 CDS Rpal_0414 NC_011004.1 446487 446996 D PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr0547 hypothetical protein; N-acetyltransferase GCN5 446487..446996 Rhodopseudomonas palustris TIE-1 6408061 YP_001989451.1 CDS Rpal_0415 NC_011004.1 447073 447609 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 447073..447609 Rhodopseudomonas palustris TIE-1 6408062 YP_001989452.1 CDS Rpal_0416 NC_011004.1 447645 449126 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bra:BRADO0276 hypothetical protein; hypothetical protein 447645..449126 Rhodopseudomonas palustris TIE-1 6408063 YP_001989453.1 CDS Rpal_0417 NC_011004.1 449315 450202 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(449315..450202) Rhodopseudomonas palustris TIE-1 6408064 YP_001989454.1 CDS Rpal_0418 NC_011004.1 450309 450635 R PFAM: protein of unknown function DUF167; KEGG: nwi:Nwi_0479 hypothetical protein; hypothetical protein complement(450309..450635) Rhodopseudomonas palustris TIE-1 6408065 YP_001989455.1 CDS Rpal_0419 NC_011004.1 450661 450951 R PFAM: protein of unknown function YGGT; KEGG: nwi:Nwi_0478 protein of unknown function YGGT; hypothetical protein complement(450661..450951) Rhodopseudomonas palustris TIE-1 6408066 YP_001989456.1 CDS Rpal_0420 NC_011004.1 451429 452241 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(451429..452241) Rhodopseudomonas palustris TIE-1 6408068 YP_001989457.1 CDS Rpal_0421 NC_011004.1 452323 452823 R KEGG: vei:Veis_3840 protein of unknown function DUF1486; hypothetical protein complement(452323..452823) Rhodopseudomonas palustris TIE-1 6408069 YP_001989458.1 CDS Rpal_0422 NC_011004.1 452927 453724 R Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase complement(452927..453724) Rhodopseudomonas palustris TIE-1 6408070 YP_001989459.1 CDS Rpal_0423 NC_011004.1 453845 454624 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nha:Nham_0606 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(453845..454624) Rhodopseudomonas palustris TIE-1 6408071 YP_001989460.1 CDS Rpal_0424 NC_011004.1 454807 455334 R PFAM: protein of unknown function DUF1332; KEGG: bbt:BBta_0275 hypothetical protein; hypothetical protein complement(454807..455334) Rhodopseudomonas palustris TIE-1 6408072 YP_001989461.1 CDS Rpal_0425 NC_011004.1 455471 456856 R PFAM: cytochrome P450; KEGG: bbt:BBta_0276 cytochrome P450 hydroxylase superfamily protein; cytochrome P450 complement(455471..456856) Rhodopseudomonas palustris TIE-1 6408073 YP_001989462.1 CDS Rpal_0426 NC_011004.1 456977 457978 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bja:bll0766 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(456977..457978) Rhodopseudomonas palustris TIE-1 6408074 YP_001989463.1 CDS Rpal_0427 NC_011004.1 458213 458737 D PFAM: protein of unknown function DUF1058; KEGG: nha:Nham_0044 protein of unknown function DUF1058; hypothetical protein 458213..458737 Rhodopseudomonas palustris TIE-1 6408075 YP_001989464.1 CDS Rpal_0428 NC_011004.1 458845 459294 R PFAM: ferric-uptake regulator; KEGG: nwi:Nwi_0035 ferric-uptake regulator; Fur family ferric uptake regulator complement(458845..459294) Rhodopseudomonas palustris TIE-1 6408076 YP_001989465.1 CDS Rpal_0429 NC_011004.1 459595 460122 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 459595..460122 Rhodopseudomonas palustris TIE-1 6408077 YP_001989466.1 CDS Rpal_0430 NC_011004.1 460184 461410 D FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 460184..461410 Rhodopseudomonas palustris TIE-1 6408078 YP_001989467.1 CDS Rpal_0431 NC_011004.1 461586 462395 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 461586..462395 Rhodopseudomonas palustris TIE-1 6408079 YP_001989468.1 CDS Rpal_0432 NC_011004.1 462579 463097 R KEGG: oan:Oant_3604 hypothetical protein; hypothetical protein complement(462579..463097) Rhodopseudomonas palustris TIE-1 6408080 YP_001989469.1 CDS Rpal_0433 NC_011004.1 463325 465535 R TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: mes:Meso_0626 catalase/peroxidase HPI; catalase/peroxidase HPI complement(463325..465535) Rhodopseudomonas palustris TIE-1 6408081 YP_001989470.1 CDS Rpal_0434 NC_011004.1 465805 466743 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nwi:Nwi_0029 regulatory protein, LysR; LysR family transcriptional regulator 465805..466743 Rhodopseudomonas palustris TIE-1 6408082 YP_001989471.1 CDS Rpal_0435 NC_011004.1 466755 468437 R KEGG: bbt:BBta_2308 methyl-accepting chemotaxis receptor/sensory transducer with PAS domain; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor complement(466755..468437) Rhodopseudomonas palustris TIE-1 6408083 YP_001989472.1 CDS Rpal_0436 NC_011004.1 468727 470895 R KEGG: nwi:Nwi_0028 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(468727..470895) Rhodopseudomonas palustris TIE-1 6408084 YP_001989473.1 CDS rpsO NC_011004.1 471234 471503 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(471234..471503) Rhodopseudomonas palustris TIE-1 6408085 YP_001989474.1 CDS truB NC_011004.1 471506 472606 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(471506..472606) Rhodopseudomonas palustris TIE-1 6408086 YP_001989475.1 CDS rbfA NC_011004.1 472606 473019 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(472606..473019) Rhodopseudomonas palustris TIE-1 6408087 YP_001989476.1 CDS infB NC_011004.1 473193 475844 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(473193..475844) Rhodopseudomonas palustris TIE-1 6408088 YP_001989477.1 CDS Rpal_0441 NC_011004.1 475837 476616 R PFAM: protein of unknown function DUF448; KEGG: nwi:Nwi_0023 hypothetical protein; hypothetical protein complement(475837..476616) Rhodopseudomonas palustris TIE-1 6408089 YP_001989478.1 CDS nusA NC_011004.1 476678 478291 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(476678..478291) Rhodopseudomonas palustris TIE-1 6408090 YP_001989479.1 CDS Rpal_0443 NC_011004.1 478294 479073 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(478294..479073) Rhodopseudomonas palustris TIE-1 6408091 YP_001989480.1 CDS Rpal_0444 NC_011004.1 479406 480491 D KEGG: bja:blr0787 hypothetical protein; hypothetical protein 479406..480491 Rhodopseudomonas palustris TIE-1 6408092 YP_001989481.1 CDS Rpal_0445 NC_011004.1 480615 481463 D PFAM: Phytanoyl-CoA dioxygenase; KEGG: pla:Plav_0212 phytanoyl-CoA dioxygenase; Phytanoyl-CoA dioxygenase 480615..481463 Rhodopseudomonas palustris TIE-1 6408093 YP_001989482.1 CDS trmB NC_011004.1 481476 482273 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(481476..482273) Rhodopseudomonas palustris TIE-1 6408094 YP_001989483.1 CDS Rpal_0447 NC_011004.1 482348 482767 R PFAM: helix-turn-helix domain protein; KEGG: nha:Nham_0026 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(482348..482767) Rhodopseudomonas palustris TIE-1 6408095 YP_001989484.1 CDS lnt NC_011004.1 482968 484578 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(482968..484578) Rhodopseudomonas palustris TIE-1 6408096 YP_001989485.1 CDS Rpal_0449 NC_011004.1 484575 485720 R PFAM: CBS domain containing protein; transporter-associated region; KEGG: bja:bll0792 magnesium and cobalt efflux protein; hypothetical protein complement(484575..485720) Rhodopseudomonas palustris TIE-1 6408097 YP_001989486.1 CDS Rpal_0450 NC_011004.1 485722 486225 R PFAM: protein of unknown function UPF0054; KEGG: nha:Nham_0023 protein of unknown function UPF0054; hypothetical protein complement(485722..486225) Rhodopseudomonas palustris TIE-1 6408098 YP_001989487.1 CDS Rpal_0451 NC_011004.1 486294 487349 R PFAM: PhoH family protein; KH type 1 domain protein; KEGG: bbt:BBta_0047 phosphate starvation-inducible protein, PhoH-like protein; PhoH family protein complement(486294..487349) Rhodopseudomonas palustris TIE-1 6408099 YP_001989488.1 CDS Rpal_0452 NC_011004.1 487356 488747 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(487356..488747) Rhodopseudomonas palustris TIE-1 6408100 YP_001989489.1 CDS Rpal_0453 NC_011004.1 488867 489526 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:bll0796 hypothetical protein; HAD family hydrolase complement(488867..489526) Rhodopseudomonas palustris TIE-1 6408101 YP_001989490.1 CDS Rpal_0454 NC_011004.1 489614 490045 R PFAM: ferric-uptake regulator; KEGG: nha:Nham_0020 ferric uptake regulator, FUR family; Fur family ferric uptake regulator complement(489614..490045) Rhodopseudomonas palustris TIE-1 6408102 YP_001989491.1 CDS Rpal_0455 NC_011004.1 490108 490593 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: bja:bll0798 acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(490108..490593) Rhodopseudomonas palustris TIE-1 6408103 YP_001989492.1 CDS Rpal_0456 NC_011004.1 490616 491311 R PFAM: peptidase M22 glycoprotease; KEGG: nha:Nham_0018 peptidase M22, glycoprotease; peptidase M22 glycoprotease complement(490616..491311) Rhodopseudomonas palustris TIE-1 6408104 YP_001989493.1 CDS Rpal_0457 NC_011004.1 491447 492013 R PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU; KEGG: bbt:BBta_0040 NifU protein; Scaffold protein Nfu/NifU complement(491447..492013) Rhodopseudomonas palustris TIE-1 6408105 YP_001989494.1 CDS Rpal_0458 NC_011004.1 492159 492653 R KEGG: nha:Nham_0015 UspA; UspA protein complement(492159..492653) Rhodopseudomonas palustris TIE-1 6408106 YP_001989495.1 CDS Rpal_0459 NC_011004.1 492898 493950 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(492898..493950) Rhodopseudomonas palustris TIE-1 6408107 YP_001989496.1 CDS Rpal_0460 NC_011004.1 494006 495562 R TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: bja:bll0803 virulence factor; integral membrane protein MviN complement(494006..495562) Rhodopseudomonas palustris TIE-1 6408108 YP_001989497.1 CDS Rpal_0461 NC_011004.1 495903 496904 D PFAM: PfkB domain protein; KEGG: nwi:Nwi_0218 PfkB; PfkB domain-containing protein 495903..496904 Rhodopseudomonas palustris TIE-1 6408109 YP_001989498.1 CDS Rpal_0462 NC_011004.1 497127 498821 R PFAM: AMP-dependent synthetase and ligase; KEGG: azo:azo3066 acyl-CoA synthetase; AMP-binding domain-containing protein complement(497127..498821) Rhodopseudomonas palustris TIE-1 6408110 YP_001989499.1 CDS Rpal_0463 NC_011004.1 498951 500138 R PFAM: beta-lactamase; KEGG: bja:bll0805 hypothetical protein; beta-lactamase complement(498951..500138) Rhodopseudomonas palustris TIE-1 6408111 YP_001989500.1 CDS Rpal_0464 NC_011004.1 500379 500705 D KEGG: bja:blr0806 hypothetical protein; hypothetical protein 500379..500705 Rhodopseudomonas palustris TIE-1 6408112 YP_001989501.1 CDS Rpal_0465 NC_011004.1 500867 502360 D TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bra:BRADO0028 succinate-semialdehyde dehydrogenase [NADP+] (SSDH); succinate-semialdehyde dehydrogenase 500867..502360 Rhodopseudomonas palustris TIE-1 6408113 YP_001989502.1 CDS Rpal_0466 NC_011004.1 502415 503851 R PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: rle:RL1126 hypothetical protein; hypothetical protein complement(502415..503851) Rhodopseudomonas palustris TIE-1 6408114 YP_001989503.1 CDS Rpal_0467 NC_011004.1 503991 504674 R KEGG: bja:bll0087 hypothetical protein; hypothetical protein complement(503991..504674) Rhodopseudomonas palustris TIE-1 6408115 YP_001989504.1 CDS Rpal_0468 NC_011004.1 504677 505663 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: nha:Nham_0428 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(504677..505663) Rhodopseudomonas palustris TIE-1 6408116 YP_001989505.1 CDS Rpal_0469 NC_011004.1 505663 506487 R PFAM: ABC transporter inner membrane protein; KEGG: nha:Nham_0427 ABC transporter inner membrane protein; ABC transporter inner membrane protein complement(505663..506487) Rhodopseudomonas palustris TIE-1 6408117 YP_001989506.1 CDS Rpal_0470 NC_011004.1 506484 507314 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_7481 ABC transporter ATP-binding protein; ABC transporter complement(506484..507314) Rhodopseudomonas palustris TIE-1 6408118 YP_001989507.1 CDS Rpal_0471 NC_011004.1 507323 508465 R PFAM: NMT1/THI5 like domain protein; KEGG: nha:Nham_0425 perplasmic binding protein of ABC transporter; NMT1/THI5 like domain-containing protein complement(507323..508465) Rhodopseudomonas palustris TIE-1 6408119 YP_001989508.1 CDS Rpal_0472 NC_011004.1 508595 509407 D PFAM: Creatininase; KEGG: nha:Nham_0424 creatininase; creatininase 508595..509407 Rhodopseudomonas palustris TIE-1 6408120 YP_001989509.1 CDS Rpal_0473 NC_011004.1 509782 511851 D PFAM: carbohydrate-selective porin OprB; KEGG: bja:blr0095 hypothetical protein; carbohydrate-selective porin OprB 509782..511851 Rhodopseudomonas palustris TIE-1 6408121 YP_001989510.1 CDS Rpal_0474 NC_011004.1 511882 513513 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: nha:Nham_0422 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase complement(511882..513513) Rhodopseudomonas palustris TIE-1 6408122 YP_001989511.1 CDS Rpal_0475 NC_011004.1 513809 514759 D KEGG: bja:blr0101 hypothetical protein; hypothetical protein 513809..514759 Rhodopseudomonas palustris TIE-1 6408123 YP_001989512.1 CDS Rpal_0477 NC_011004.1 516207 517538 D KEGG: bbt:BBta_7591 hypothetical protein; hypothetical protein 516207..517538 Rhodopseudomonas palustris TIE-1 6408126 YP_001989513.1 CDS Rpal_0478 NC_011004.1 517672 518232 D PFAM: protein of unknown function DUF937; KEGG: nha:Nham_0511 protein of unknown function DUF937; hypothetical protein 517672..518232 Rhodopseudomonas palustris TIE-1 6408127 YP_001989514.1 CDS Rpal_0479 NC_011004.1 518290 518586 D KEGG: nha:Nham_0510 transglycosylase-associated protein; transglycosylase-associated protein 518290..518586 Rhodopseudomonas palustris TIE-1 6408128 YP_001989515.1 CDS Rpal_0480 NC_011004.1 518640 519422 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: bja:bll0137 hypothetical oxidoreductase; short-chain dehydrogenase/reductase SDR complement(518640..519422) Rhodopseudomonas palustris TIE-1 6408129 YP_001989516.1 CDS Rpal_0481 NC_011004.1 519683 520747 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:blr0138 hypothetical protein; acyl-CoA dehydrogenase domain-containing protein 519683..520747 Rhodopseudomonas palustris TIE-1 6408130 YP_001989517.1 CDS Rpal_0482 NC_011004.1 520774 521934 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:blr0139 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 520774..521934 Rhodopseudomonas palustris TIE-1 6408131 YP_001989518.1 CDS Rpal_0483 NC_011004.1 521968 522774 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr0140 enoyl-CoA hydratase; Enoyl-CoA hydratase/isomerase 521968..522774 Rhodopseudomonas palustris TIE-1 6408132 YP_001989519.1 CDS Rpal_0484 NC_011004.1 522919 523683 R KEGG: bja:bll0142 hypothetical protein; hypothetical protein complement(522919..523683) Rhodopseudomonas palustris TIE-1 6408133 YP_001989520.1 CDS Rpal_0485 NC_011004.1 523686 524471 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(523686..524471) Rhodopseudomonas palustris TIE-1 6408134 YP_001989521.1 CDS Rpal_0486 NC_011004.1 524648 525853 R KEGG: bja:bll0144 substrate-binding protein; substrate-binding protein complement(524648..525853) Rhodopseudomonas palustris TIE-1 6408135 YP_001989522.1 CDS Rpal_0487 NC_011004.1 526207 526995 D PFAM: nuclease (SNase domain protein); KEGG: nha:Nham_0509 nuclease (SNase-like); nuclease 526207..526995 Rhodopseudomonas palustris TIE-1 6408136 YP_001989523.1 CDS Rpal_0488 NC_011004.1 527007 528524 D PFAM: peptidase M48 Ste24p; KEGG: nha:Nham_0508 peptidase M48, Ste24p; peptidase M48 Ste24p 527007..528524 Rhodopseudomonas palustris TIE-1 6408137 YP_001989524.1 CDS Rpal_0489 NC_011004.1 528629 529465 R PFAM: transcription factor CarD; KEGG: bja:bll0156 probable transcriptional regulator; CarD family transcriptional regulator complement(528629..529465) Rhodopseudomonas palustris TIE-1 6408138 YP_001989525.1 CDS Rpal_0490 NC_011004.1 529988 530326 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bja:bll0157 ferredoxin; 4Fe-4S ferredoxin complement(529988..530326) Rhodopseudomonas palustris TIE-1 6408139 YP_001989526.1 CDS Rpal_0491 NC_011004.1 530401 530670 R PFAM: RNA-binding S4 domain protein; KEGG: nha:Nham_0505 RNA-binding S4; RNA-binding S4 domain-containing protein complement(530401..530670) Rhodopseudomonas palustris TIE-1 6408140 YP_001989527.1 CDS Rpal_0492 NC_011004.1 530701 533982 R PFAM: helicase domain protein; KEGG: nha:Nham_0504 helicase-like; helicase domain-containing protein complement(530701..533982) Rhodopseudomonas palustris TIE-1 6408141 YP_001989528.1 CDS Rpal_0493 NC_011004.1 534292 535164 R KEGG: nha:Nham_0503 hypothetical protein; hypothetical protein complement(534292..535164) Rhodopseudomonas palustris TIE-1 6408142 YP_001989529.1 CDS rpmB NC_011004.1 535465 535770 D required for 70S ribosome assembly; 50S ribosomal protein L28 535465..535770 Rhodopseudomonas palustris TIE-1 6408143 YP_001989530.1 CDS Rpal_0495 NC_011004.1 536095 539325 D KEGG: bbt:BBta_0531 sensor histidine kinase with HAMP, PAS and response regulator receiver domains; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 536095..539325 Rhodopseudomonas palustris TIE-1 6408144 YP_001989531.1 CDS Rpal_0496 NC_011004.1 539349 540497 R KEGG: nha:Nham_0500 hypothetical protein; hypothetical protein complement(539349..540497) Rhodopseudomonas palustris TIE-1 6408145 YP_001989532.1 CDS Rpal_0497 NC_011004.1 540522 542426 R KEGG: bbt:BBta_7564 aerobic cobaltochelatase CobT subunit (cobalamin biosynthesis); TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit; SMART: von Willebrand factor type A; cobalt chelatase large subunit complement(540522..542426) Rhodopseudomonas palustris TIE-1 6408146 YP_001989533.1 CDS Rpal_0498 NC_011004.1 542423 542833 R PFAM: GCN5-related N-acetyltransferase; KEGG: bja:bll0179 acetyltransferase; N-acetyltransferase GCN5 complement(542423..542833) Rhodopseudomonas palustris TIE-1 6408147 YP_001989534.1 CDS Rpal_0499 NC_011004.1 542838 543833 R KEGG: bja:bll0180 cobalt insertion protein; TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase AAA; cobalt chelatase small subunit complement(542838..543833) Rhodopseudomonas palustris TIE-1 6408148 YP_001989535.1 CDS Rpal_0500 NC_011004.1 544113 544730 D PFAM: SNARE associated Golgi protein; KEGG: bja:blr0181 hypothetical protein; hypothetical protein 544113..544730 Rhodopseudomonas palustris TIE-1 6408149 YP_001989536.1 CDS Rpal_0501 NC_011004.1 544795 545439 R PFAM: heat shock protein DnaJ domain protein; KEGG: nha:Nham_0496 heat shock protein DnaJ-like; heat shock protein DnaJ domain-containing protein complement(544795..545439) Rhodopseudomonas palustris TIE-1 6408150 YP_001989537.1 CDS Rpal_0502 NC_011004.1 545560 545829 D PFAM: BolA family protein; KEGG: bja:bsr0185 hypothetical protein; BolA family protein 545560..545829 Rhodopseudomonas palustris TIE-1 6408151 YP_001989538.1 CDS Rpal_0503 NC_011004.1 545847 547208 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: nha:Nham_0492 protein of unknown function DUF21; hypothetical protein complement(545847..547208) Rhodopseudomonas palustris TIE-1 6408152 YP_001989539.1 CDS aroB NC_011004.1 547256 548401 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(547256..548401) Rhodopseudomonas palustris TIE-1 6408153 YP_001989540.1 CDS Rpal_0505 NC_011004.1 548412 549014 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(548412..549014) Rhodopseudomonas palustris TIE-1 6408154 YP_001989541.1 CDS Rpal_0506 NC_011004.1 549153 549299 D KEGG: bja:bsr0189 hypothetical protein; hypothetical protein 549153..549299 Rhodopseudomonas palustris TIE-1 6408155 YP_001989542.1 CDS Rpal_0507 NC_011004.1 549316 550335 D TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: nha:Nham_0488 tyrosine recombinase XerD; tyrosine recombinase XerD 549316..550335 Rhodopseudomonas palustris TIE-1 6408156 YP_001989543.1 CDS Rpal_0508 NC_011004.1 550342 550917 R PFAM: cytochrome B561; KEGG: bbt:BBta_5356 cytochrome b561; cytochrome B561 complement(550342..550917) Rhodopseudomonas palustris TIE-1 6408157 YP_001989544.1 CDS Rpal_0509 NC_011004.1 551193 552143 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 551193..552143 Rhodopseudomonas palustris TIE-1 6408158 YP_001989545.1 CDS Rpal_0510 NC_011004.1 552515 553951 D PFAM: protein of unknown function DUF949; KEGG: bbt:BBta_7577 exported protein of unknown function with transcriptiona regulatory protein domain (C-term); hypothetical protein 552515..553951 Rhodopseudomonas palustris TIE-1 6408159 YP_001989546.1 CDS Rpal_0511 NC_011004.1 554193 557033 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(554193..557033) Rhodopseudomonas palustris TIE-1 6408160 YP_001989547.1 CDS Rpal_0512 NC_011004.1 557376 558326 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bja:blr0205 hypothetical protein; PpiC-type peptidyl-prolyl cis-trans isomerase 557376..558326 Rhodopseudomonas palustris TIE-1 6408161 YP_001989548.1 CDS Rpal_0513 NC_011004.1 558419 561142 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(558419..561142) Rhodopseudomonas palustris TIE-1 6408162 YP_001989549.1 CDS Rpal_0514 NC_011004.1 561318 562526 D catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 561318..562526 Rhodopseudomonas palustris TIE-1 6408163 YP_001989550.1 CDS Rpal_0515 NC_011004.1 562706 564268 R TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_7638 drug resistance transporter EmrB-FarB-QacA family; EmrB/QacA subfamily drug resistance transporter complement(562706..564268) Rhodopseudomonas palustris TIE-1 6408164 YP_001989551.1 CDS Rpal_0516 NC_011004.1 564272 565441 R PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO0542 efflux pump protein (HlyD domain), EmrA-FarA family; secretion protein HlyD family protein complement(564272..565441) Rhodopseudomonas palustris TIE-1 6408165 YP_001989552.1 CDS Rpal_0517 NC_011004.1 565434 565919 R PFAM: regulatory protein MarR; KEGG: bja:bll0933 transcriptional regulatory protein; MarR family transcriptional regulator complement(565434..565919) Rhodopseudomonas palustris TIE-1 6408166 YP_001989553.1 CDS Rpal_0518 NC_011004.1 566109 566606 D PFAM: ferric-uptake regulator; KEGG: nha:Nham_0618 ferric uptake regulator, FUR family; Fur family ferric uptake regulator 566109..566606 Rhodopseudomonas palustris TIE-1 6408167 YP_001989554.1 CDS Rpal_0519 NC_011004.1 566771 567694 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr0935 hypothetical protein; hypothetical protein 566771..567694 Rhodopseudomonas palustris TIE-1 6408168 YP_001989555.1 CDS ispG NC_011004.1 567708 569003 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 567708..569003 Rhodopseudomonas palustris TIE-1 6408169 YP_001989556.1 CDS Rpal_0521 NC_011004.1 569246 570898 R TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: bja:bll0940 Na(+)/H(+) exchanger; Na+/H+ antiporter complement(569246..570898) Rhodopseudomonas palustris TIE-1 6408170 YP_001989557.1 CDS Rpal_0522 NC_011004.1 571208 572791 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: mrd:Mrad2831_4412 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 571208..572791 Rhodopseudomonas palustris TIE-1 6408171 YP_001989558.1 CDS Rpal_0523 NC_011004.1 572809 573252 D PFAM: BLUF domain protein; KEGG: mex:Mext_4031 BLUF domain protein; BLUF domain-containing protein 572809..573252 Rhodopseudomonas palustris TIE-1 6408172 YP_001989559.1 CDS Rpal_0524 NC_011004.1 573263 573949 R PFAM: protein of unknown function DUF1345; KEGG: nha:Nham_0622 protein of unknown function DUF1345; hypothetical protein complement(573263..573949) Rhodopseudomonas palustris TIE-1 6408173 YP_001989560.1 CDS Rpal_0525 NC_011004.1 573957 574883 R PFAM: polyprenyl synthetase; KEGG: nha:Nham_0623 polyprenyl synthetase; polyprenyl synthetase complement(573957..574883) Rhodopseudomonas palustris TIE-1 6408174 YP_001989561.1 CDS mtgA NC_011004.1 574985 575695 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 574985..575695 Rhodopseudomonas palustris TIE-1 6408175 YP_001989562.1 CDS rpmF NC_011004.1 575857 576039 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 575857..576039 Rhodopseudomonas palustris TIE-1 6408176 YP_001989563.1 CDS Rpal_0528 NC_011004.1 576282 576905 D KEGG: bra:BRADO0558 hypothetical protein; hypothetical protein 576282..576905 Rhodopseudomonas palustris TIE-1 6408177 YP_001989564.1 CDS Rpal_0529 NC_011004.1 576922 577236 R hypothetical protein complement(576922..577236) Rhodopseudomonas palustris TIE-1 6408178 YP_001989565.1 CDS Rpal_0530 NC_011004.1 577475 579217 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bja:blr0951 hypothetical protein; diguanylate cyclase/phosphodiesterase 577475..579217 Rhodopseudomonas palustris TIE-1 6408179 YP_001989566.1 CDS Rpal_0531 NC_011004.1 579348 579938 R TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: bbt:BBta_7615 polyhydroxyalkanoate synthesis repressor PhaR-like protein; polyhydroxyalkonate synthesis repressor PhaR complement(579348..579938) Rhodopseudomonas palustris TIE-1 6408180 YP_001989567.1 CDS Rpal_0532 NC_011004.1 580220 581398 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 580220..581398 Rhodopseudomonas palustris TIE-1 6408181 YP_001989568.1 CDS Rpal_0533 NC_011004.1 581581 582306 D TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nha:Nham_3689 acetoacetyl-CoA reductase; acetoacetyl-CoA reductase 581581..582306 Rhodopseudomonas palustris TIE-1 6408182 YP_001989569.1 CDS Rpal_0534 NC_011004.1 582383 583249 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bra:BRADO0564 conserved hypothetical protein; transmembrane protein; hypothetical protein 582383..583249 Rhodopseudomonas palustris TIE-1 6408183 YP_001989570.1 CDS Rpal_0535 NC_011004.1 583269 583790 R KEGG: bra:BRADO0756 conserved hypothetical protein; signal peptide; protease; hypothetical protein complement(583269..583790) Rhodopseudomonas palustris TIE-1 6408184 YP_001989571.1 CDS Rpal_0536 NC_011004.1 583921 586398 R KEGG: bbt:BBta_7352 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB complement(583921..586398) Rhodopseudomonas palustris TIE-1 6408185 YP_001989572.1 CDS Rpal_0537 NC_011004.1 586572 587624 D PFAM: acyltransferase 3; KEGG: nwi:Nwi_0358 acyltransferase 3; acyltransferase 3 586572..587624 Rhodopseudomonas palustris TIE-1 6408186 YP_001989573.1 CDS Rpal_0538 NC_011004.1 587743 589302 R KEGG: azo:azo3307 probable coenzyme A transferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase complement(587743..589302) Rhodopseudomonas palustris TIE-1 6408187 YP_001989574.1 CDS Rpal_0539 NC_011004.1 590049 591503 R PFAM: porin; KEGG: bbt:BBta_3063 exported protein of unknown function with porin precursor domain; porin complement(590049..591503) Rhodopseudomonas palustris TIE-1 6408188 YP_001989575.1 CDS Rpal_0540 NC_011004.1 592093 592605 D PFAM: regulatory protein MarR; KEGG: bja:blr4984 transcriptional regulatory protein; MarR family transcriptional regulator 592093..592605 Rhodopseudomonas palustris TIE-1 6408189 YP_001989576.1 CDS Rpal_0541 NC_011004.1 592600 593718 R KEGG: bja:bll4985 hypothetical protein; hypothetical protein complement(592600..593718) Rhodopseudomonas palustris TIE-1 6408190 YP_001989577.1 CDS Rpal_0542 NC_011004.1 594191 594739 D KEGG: nha:Nham_3497 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 594191..594739 Rhodopseudomonas palustris TIE-1 6408192 YP_001989578.1 CDS Rpal_0543 NC_011004.1 594742 595794 R TIGRFAM: membrane protein AbrB duplication; PFAM: ammonia monooxygenase; KEGG: bja:bll1341 hypothetical protein; membrane protein complement(594742..595794) Rhodopseudomonas palustris TIE-1 6408193 YP_001989579.1 CDS Rpal_0544 NC_011004.1 595989 596516 D KEGG: bra:BRADO6543 conserved hypothetical protein; signal peptide; hypothetical protein 595989..596516 Rhodopseudomonas palustris TIE-1 6408194 YP_001989580.1 CDS Rpal_0545 NC_011004.1 596670 597053 D PFAM: LrgA family protein; KEGG: bja:blr1347 hypothetical protein; LrgA family protein 596670..597053 Rhodopseudomonas palustris TIE-1 6408195 YP_001989581.1 CDS Rpal_0546 NC_011004.1 597050 597772 D PFAM: LrgB family protein; KEGG: bja:blr1348 hypothetical protein; LrgB family protein 597050..597772 Rhodopseudomonas palustris TIE-1 6408196 YP_001989582.1 CDS Rpal_0547 NC_011004.1 597867 598331 D KEGG: mrd:Mrad2831_1254 hypothetical protein; hypothetical protein 597867..598331 Rhodopseudomonas palustris TIE-1 6408197 YP_001989583.1 CDS Rpal_0548 NC_011004.1 598335 599411 R PFAM: phospholipase/carboxylesterase; KEGG: bra:BRADO6537 hypothetical protein; phospholipase/carboxylesterase complement(598335..599411) Rhodopseudomonas palustris TIE-1 6408198 YP_001989584.1 CDS Rpal_0549 NC_011004.1 599594 600748 D PFAM: protein of unknown function UPF0118; KEGG: bbt:BBta_2998 membrane protein of unknown function; hypothetical protein 599594..600748 Rhodopseudomonas palustris TIE-1 6408199 YP_001989585.1 CDS Rpal_0550 NC_011004.1 600745 601407 R TIGRFAM: anti-sigma factor, , ChrR family; KEGG: rle:pRL120581 transcriptional regulator; anti-ECFsigma factor ChrR complement(600745..601407) Rhodopseudomonas palustris TIE-1 6408200 YP_001989586.1 CDS Rpal_0551 NC_011004.1 601404 601991 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(601404..601991) Rhodopseudomonas palustris TIE-1 6408201 YP_001989587.1 CDS Rpal_0552 NC_011004.1 602382 602483 D hypothetical protein 602382..602483 Rhodopseudomonas palustris TIE-1 6408202 YP_001989588.1 CDS Rpal_0553 NC_011004.1 602619 603500 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mrd:Mrad2831_3013 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(602619..603500) Rhodopseudomonas palustris TIE-1 6408203 YP_001989589.1 CDS Rpal_0554 NC_011004.1 603606 604913 D involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 603606..604913 Rhodopseudomonas palustris TIE-1 6408204 YP_001989590.1 CDS Rpal_0555 NC_011004.1 604951 605790 D TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; cupin; KEGG: mrd:Mrad2831_3011 allantoin catabolism protein; hypothetical protein 604951..605790 Rhodopseudomonas palustris TIE-1 6408205 YP_001989591.1 CDS Rpal_0556 NC_011004.1 605787 606299 D catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 605787..606299 Rhodopseudomonas palustris TIE-1 6408206 YP_001989592.1 CDS Rpal_0557 NC_011004.1 606349 606969 R PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: dac:Daci_2653 methyltransferase type 11; type 11 methyltransferase complement(606349..606969) Rhodopseudomonas palustris TIE-1 6408207 YP_001989593.1 CDS Rpal_0558 NC_011004.1 607089 607646 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: bja:bll1367 hypothetical protein; HNH endonuclease complement(607089..607646) Rhodopseudomonas palustris TIE-1 6408208 YP_001989594.1 CDS Rpal_0559 NC_011004.1 607927 608925 D TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bja:bll4682 cysteine synthase; cysteine synthase A 607927..608925 Rhodopseudomonas palustris TIE-1 6408209 YP_001989595.1 CDS Rpal_0560 NC_011004.1 608997 609914 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(608997..609914) Rhodopseudomonas palustris TIE-1 6408210 YP_001989596.1 CDS Rpal_0561 NC_011004.1 609985 610902 R PFAM: pirin; KEGG: bbt:BBta_0019 pirin family protein; pirin complement(609985..610902) Rhodopseudomonas palustris TIE-1 6408211 YP_001989597.1 CDS Rpal_0562 NC_011004.1 611033 612454 R PFAM: Malonyl-CoA decarboxylase; KEGG: pde:Pden_1720 malonyl-CoA decarboxylase; malonyl-CoA decarboxylase complement(611033..612454) Rhodopseudomonas palustris TIE-1 6408212 YP_001989598.1 CDS Rpal_0563 NC_011004.1 612630 613235 R PFAM: PAS fold-4 domain protein; KEGG: sma:SAV698 magnesium or manganese-dependent protein phosphatase; PAS fold-4 domain-containing protein complement(612630..613235) Rhodopseudomonas palustris TIE-1 6408213 YP_001989599.1 CDS Rpal_0564 NC_011004.1 613311 614675 R PFAM: MmgE/PrpD family protein; KEGG: bja:bll0816 hypothetical protein; MmgE/PrpD family protein complement(613311..614675) Rhodopseudomonas palustris TIE-1 6408214 YP_001989600.1 CDS Rpal_0565 NC_011004.1 614846 615958 D KEGG: nha:Nham_0005 hypothetical protein; hypothetical protein 614846..615958 Rhodopseudomonas palustris TIE-1 6408215 YP_001989601.1 CDS Rpal_0566 NC_011004.1 615963 616424 R KEGG: mxa:MXAN_4080 hypothetical protein; hypothetical protein complement(615963..616424) Rhodopseudomonas palustris TIE-1 6408216 YP_001989602.1 CDS Rpal_0567 NC_011004.1 616799 617065 D hypothetical protein 616799..617065 Rhodopseudomonas palustris TIE-1 6408217 YP_001989603.1 CDS Rpal_0568 NC_011004.1 617228 618415 D TIGRFAM: esterase, PHB depolymerase family; KEGG: bja:blr0899 poly(3-hydroxyalkanoate) depolymerase; esterase, PHB depolymerase family 617228..618415 Rhodopseudomonas palustris TIE-1 6408218 YP_001989604.1 CDS Rpal_0569 NC_011004.1 618543 618962 D PFAM: protein of unknown function DUF1236; KEGG: nha:Nham_0234 hypothetical protein; hypothetical protein 618543..618962 Rhodopseudomonas palustris TIE-1 6408219 YP_001989605.1 CDS Rpal_0570 NC_011004.1 619039 620016 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bja:blr7666 transcriptional regulatory protein; AraC family transcriptional regulator complement(619039..620016) Rhodopseudomonas palustris TIE-1 6408220 YP_001989606.1 CDS Rpal_0571 NC_011004.1 620277 620942 R PFAM: beta-lactamase domain protein; KEGG: bbt:BBta_7673 enzyme with metallo-hydrolase/oxidoreductase domain; beta-lactamase domain-containing protein complement(620277..620942) Rhodopseudomonas palustris TIE-1 6408221 YP_001989607.1 CDS Rpal_0572 NC_011004.1 621032 622150 R PFAM: von Willebrand factor type A; KEGG: hch:HCH_00942 protein containing VWFA domain; von Willebrand factor type A complement(621032..622150) Rhodopseudomonas palustris TIE-1 6408222 YP_001989608.1 CDS Rpal_0573 NC_011004.1 622327 622785 D PFAM: protein of unknown function DUF1052; KEGG: bra:BRADO0513 hypothetical protein; hypothetical protein 622327..622785 Rhodopseudomonas palustris TIE-1 6408223 YP_001989609.1 CDS Rpal_0574 NC_011004.1 622923 623477 R PFAM: response regulator receiver; KEGG: bja:bll0904 two-component response regulator; Fis family transcriptional regulator complement(622923..623477) Rhodopseudomonas palustris TIE-1 6408224 YP_001989610.1 CDS Rpal_0575 NC_011004.1 623569 624891 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nha:Nham_0230 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(623569..624891) Rhodopseudomonas palustris TIE-1 6408225 YP_001989611.1 CDS Rpal_0576 NC_011004.1 625002 625796 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr0906 nodulation ATP-binding protein I; ABC transporter 625002..625796 Rhodopseudomonas palustris TIE-1 6408226 YP_001989612.1 CDS Rpal_0577 NC_011004.1 625793 626623 D PFAM: ABC transporter; KEGG: bbt:BBta_7657 ABC transporter permease protein; ABC transporter 625793..626623 Rhodopseudomonas palustris TIE-1 6408227 YP_001989613.1 CDS Rpal_0578 NC_011004.1 626762 628090 D TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: bja:blr0908 hypothetical protein; polyhydroxyalkanoate depolymerase 626762..628090 Rhodopseudomonas palustris TIE-1 6408228 YP_001989614.1 CDS Rpal_0579 NC_011004.1 628431 629180 D PFAM: protein of unknown function DUF45; KEGG: bja:blr0909 hypothetical protein; hypothetical protein 628431..629180 Rhodopseudomonas palustris TIE-1 6408229 YP_001989615.1 CDS Rpal_0580 NC_011004.1 629453 631672 R KEGG: nha:Nham_0227 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein complement(629453..631672) Rhodopseudomonas palustris TIE-1 6408230 YP_001989616.1 CDS Rpal_0581 NC_011004.1 631855 632106 D hypothetical protein 631855..632106 Rhodopseudomonas palustris TIE-1 6408231 YP_001989617.1 CDS Rpal_0582 NC_011004.1 632202 632414 R hypothetical protein complement(632202..632414) Rhodopseudomonas palustris TIE-1 6408232 YP_001989618.1 CDS Rpal_0583 NC_011004.1 632706 633926 R PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO0527 branched-chain amino acid ABC transporter periplasmic binding protein; extracellular ligand-binding receptor complement(632706..633926) Rhodopseudomonas palustris TIE-1 6408233 YP_001989619.1 CDS Rpal_0584 NC_011004.1 634077 634439 R PFAM: protein of unknown function DUF1304; KEGG: bja:bll0914 hypothetical protein; hypothetical protein complement(634077..634439) Rhodopseudomonas palustris TIE-1 6408234 YP_001989620.1 CDS Rpal_0585 NC_011004.1 634522 634950 D KEGG: bja:blr0911 hypothetical protein; hypothetical protein 634522..634950 Rhodopseudomonas palustris TIE-1 6408235 YP_001989621.1 CDS Rpal_0586 NC_011004.1 635045 637786 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bbt:BBta_4235 sensor histidine kinase with a CHASE3 and a response regulator receiver domain; multi-sensor hybrid histidine kinase 635045..637786 Rhodopseudomonas palustris TIE-1 6408236 YP_001989622.1 CDS Rpal_0587 NC_011004.1 637978 640311 D PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: bra:BRADO0672 transcriptional accessory protein containing S1 RNA-binding domain; RNA binding S1 domain-containing protein 637978..640311 Rhodopseudomonas palustris TIE-1 6408237 YP_001989623.1 CDS Rpal_0588 NC_011004.1 640334 641557 R TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: nha:Nham_1938 chromate transporter; chromate transporter complement(640334..641557) Rhodopseudomonas palustris TIE-1 6408238 YP_001989624.1 CDS Rpal_0589 NC_011004.1 641554 642447 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hau:Haur_5203 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(641554..642447) Rhodopseudomonas palustris TIE-1 6408239 YP_001989625.1 CDS Rpal_0590 NC_011004.1 642477 643946 R PFAM: amino acid permease-associated region; KEGG: gvi:gll1666 probable amino acid transporter; amino acid permease-associated protein complement(642477..643946) Rhodopseudomonas palustris TIE-1 6408240 YP_001989626.1 CDS Rpal_0591 NC_011004.1 643987 644667 R PFAM: regulatory protein TetR; KEGG: rme:Rmet_3816 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(643987..644667) Rhodopseudomonas palustris TIE-1 6408241 YP_001989627.1 CDS Rpal_0592 NC_011004.1 644762 646429 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rfr:Rfer_0523 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 644762..646429 Rhodopseudomonas palustris TIE-1 6408242 YP_001989628.1 CDS Rpal_0593 NC_011004.1 646592 647932 R KEGG: mag:amb0303 periplasmic protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(646592..647932) Rhodopseudomonas palustris TIE-1 6408243 YP_001989629.1 CDS Rpal_0594 NC_011004.1 648096 650897 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(648096..650897) Rhodopseudomonas palustris TIE-1 6408244 YP_001989630.1 CDS argJ NC_011004.1 651120 652361 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 651120..652361 Rhodopseudomonas palustris TIE-1 6408245 YP_001989631.1 CDS Rpal_0596 NC_011004.1 652358 652855 D KEGG: bbt:BBta_0762 exported protein of unknown function; hypothetical protein 652358..652855 Rhodopseudomonas palustris TIE-1 6408246 YP_001989632.1 CDS Rpal_0597 NC_011004.1 652863 653264 D PFAM: NUDIX hydrolase; KEGG: bbt:BBta_7592 mutator protein MutT; NUDIX hydrolase 652863..653264 Rhodopseudomonas palustris TIE-1 6408247 YP_001989633.1 CDS Rpal_0598 NC_011004.1 653392 654561 R PFAM: Integrase catalytic region; KEGG: sme:SMc04250 transposase protein; integrase catalytic subunit complement(653392..654561) Rhodopseudomonas palustris TIE-1 6408248 YP_001989634.1 CDS Rpal_0599 NC_011004.1 654707 655531 R PFAM: methyltransferase type 11; KEGG: bja:bll0208 methyltransferase; type 11 methyltransferase complement(654707..655531) Rhodopseudomonas palustris TIE-1 6408249 YP_001989635.1 CDS Rpal_0600 NC_011004.1 655558 655857 R KEGG: bbt:BBta_7253 hypothetical protein; hypothetical protein complement(655558..655857) Rhodopseudomonas palustris TIE-1 6408250 YP_001989636.1 CDS Rpal_0601 NC_011004.1 655963 656778 D PFAM: phosphoribosyltransferase; KEGG: nha:Nham_0480 phosphoribosyltransferase; phosphoribosyltransferase 655963..656778 Rhodopseudomonas palustris TIE-1 6408251 YP_001989637.1 CDS Rpal_0602 NC_011004.1 656821 657096 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: bra:BRADO0582 glutaredoxin 3; glutaredoxin 3 656821..657096 Rhodopseudomonas palustris TIE-1 6408252 YP_001989638.1 CDS Rpal_0603 NC_011004.1 657093 657968 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bbt:BBta_7596 nitrilase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 657093..657968 Rhodopseudomonas palustris TIE-1 6408253 YP_001989639.1 CDS Rpal_0604 NC_011004.1 657965 658459 D PFAM: protein of unknown function DUF1178; KEGG: bja:blr0212 hypothetical protein; hypothetical protein 657965..658459 Rhodopseudomonas palustris TIE-1 6408254 YP_001989640.1 CDS Rpal_0605 NC_011004.1 658681 659118 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: nha:Nham_0476 protein of unknown function DUF6, transmembrane; hypothetical protein 658681..659118 Rhodopseudomonas palustris TIE-1 6408255 YP_001989641.1 CDS Rpal_0606 NC_011004.1 659119 660018 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: nha:Nham_0475 hypothetical protein; hypothetical protein complement(659119..660018) Rhodopseudomonas palustris TIE-1 6408256 YP_001989642.1 CDS Rpal_0607 NC_011004.1 660146 660907 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(660146..660907) Rhodopseudomonas palustris TIE-1 6408257 YP_001989643.1 CDS Rpal_0608 NC_011004.1 661101 662354 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 661101..662354 Rhodopseudomonas palustris TIE-1 6408258 YP_001989644.1 CDS Rpal_0609 NC_011004.1 662690 664957 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: bja:blr0217 phosphoenolpyruvate-protein phosphotransferase; protein PtsP 662690..664957 Rhodopseudomonas palustris TIE-1 6408259 YP_001989645.1 CDS prfA NC_011004.1 665014 666099 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 665014..666099 Rhodopseudomonas palustris TIE-1 6408260 YP_001989646.1 CDS Rpal_0611 NC_011004.1 666096 666965 D TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; methyltransferase type 11; KEGG: nha:Nham_0469 modification methylase, HemK family; protein-(glutamine-N5) methyltransferase 666096..666965 Rhodopseudomonas palustris TIE-1 6408261 YP_001989647.1 CDS Rpal_0612 NC_011004.1 667417 668112 D KEGG: nha:Nham_0468 hypothetical protein; hypothetical protein 667417..668112 Rhodopseudomonas palustris TIE-1 6408262 YP_001989648.1 CDS Rpal_0613 NC_011004.1 668215 668994 R PFAM: methyltransferase type 11; KEGG: bja:bll0221 hypothetical protein; type 11 methyltransferase complement(668215..668994) Rhodopseudomonas palustris TIE-1 6408263 YP_001989649.1 CDS Rpal_0614 NC_011004.1 669163 669930 D KEGG: nha:Nham_0466 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 669163..669930 Rhodopseudomonas palustris TIE-1 6408264 YP_001989650.1 CDS Rpal_0615 NC_011004.1 669963 670364 D PFAM: protein of unknown function DUF985; KEGG: bja:blr0223 hypothetical protein; hypothetical protein 669963..670364 Rhodopseudomonas palustris TIE-1 6408265 YP_001989651.1 CDS Rpal_0616 NC_011004.1 670485 671423 R PFAM: PfkB domain protein; KEGG: nha:Nham_0460 PfkB; PfkB domain-containing protein complement(670485..671423) Rhodopseudomonas palustris TIE-1 6408266 YP_001989652.1 CDS Rpal_0617 NC_011004.1 671420 672352 R PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: bja:blr8123 MutT/NUDIX family protein; NUDIX hydrolase complement(671420..672352) Rhodopseudomonas palustris TIE-1 6408267 YP_001989653.1 CDS Rpal_0618 NC_011004.1 672357 672776 R PFAM: histidine triad (HIT) protein; KEGG: bja:blr8122 hypothetical protein; histidine triad (HIT) protein complement(672357..672776) Rhodopseudomonas palustris TIE-1 6408268 YP_001989654.1 CDS Rpal_0619 NC_011004.1 673248 675119 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 673248..675119 Rhodopseudomonas palustris TIE-1 6408270 YP_001989655.1 CDS Rpal_0620 NC_011004.1 675141 675461 D PFAM: conserved hypothetical protein; KEGG: nha:Nham_0463 conserved hypothetical protein 103; hypothetical protein 675141..675461 Rhodopseudomonas palustris TIE-1 6408271 YP_001989656.1 CDS recR NC_011004.1 675559 676161 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 675559..676161 Rhodopseudomonas palustris TIE-1 6408272 YP_001989657.1 CDS Rpal_0622 NC_011004.1 676181 676609 D KEGG: bja:bll8113 hypothetical protein; hypothetical protein 676181..676609 Rhodopseudomonas palustris TIE-1 6408273 YP_001989658.1 CDS Rpal_0623 NC_011004.1 676650 678029 R PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr8112 hypothetical protein; major facilitator superfamily protein complement(676650..678029) Rhodopseudomonas palustris TIE-1 6408274 YP_001989659.1 CDS Rpal_0624 NC_011004.1 678097 679299 R PFAM: protein of unknown function DUF195; KEGG: bbt:BBta_7338 hypothetical protein; hypothetical protein complement(678097..679299) Rhodopseudomonas palustris TIE-1 6408275 YP_001989660.1 CDS def NC_011004.1 679449 679976 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 679449..679976 Rhodopseudomonas palustris TIE-1 6408276 YP_001989661.1 CDS fmt NC_011004.1 680055 680987 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 680055..680987 Rhodopseudomonas palustris TIE-1 6408277 YP_001989662.1 CDS truA NC_011004.1 681174 681911 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 681174..681911 Rhodopseudomonas palustris TIE-1 6408278 YP_001989663.1 CDS Rpal_0628 NC_011004.1 682049 683212 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(682049..683212) Rhodopseudomonas palustris TIE-1 6408279 YP_001989664.1 CDS Rpal_0629 NC_011004.1 683212 683685 R PFAM: protein of unknown function DUF805; KEGG: bja:blr8105 hypothetical protein; hypothetical protein complement(683212..683685) Rhodopseudomonas palustris TIE-1 6408280 YP_001989665.1 CDS dapD NC_011004.1 683704 684549 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(683704..684549) Rhodopseudomonas palustris TIE-1 6408281 YP_001989666.1 CDS Rpal_0631 NC_011004.1 684734 685435 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nha:Nham_3699 pyrimidine 5-nucleotidase; pyrimidine 5'-nucleotidase complement(684734..685435) Rhodopseudomonas palustris TIE-1 6408282 YP_001989667.1 CDS Rpal_0632 NC_011004.1 685432 686451 R KEGG: bja:blr8102 hypothetical protein; hypothetical protein complement(685432..686451) Rhodopseudomonas palustris TIE-1 6408283 YP_001989668.1 CDS Rpal_0633 NC_011004.1 686553 687449 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(686553..687449) Rhodopseudomonas palustris TIE-1 6408284 YP_001989669.1 CDS Rpal_0634 NC_011004.1 687574 687942 R PFAM: protein of unknown function DUF423; KEGG: bbt:BBta_7328 membrane protein of unknown function; hypothetical protein complement(687574..687942) Rhodopseudomonas palustris TIE-1 6408285 YP_001989670.1 CDS engB NC_011004.1 687942 688592 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(687942..688592) Rhodopseudomonas palustris TIE-1 6408286 YP_001989671.1 CDS Rpal_0636 NC_011004.1 688744 690612 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(688744..690612) Rhodopseudomonas palustris TIE-1 6408287 YP_001989672.1 CDS Rpal_0637 NC_011004.1 690629 690970 R TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: nha:Nham_3704 ribonuclease P protein component; ribonuclease P protein component complement(690629..690970) Rhodopseudomonas palustris TIE-1 6408288 YP_001989673.1 CDS rpmH NC_011004.1 690994 691128 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(690994..691128) Rhodopseudomonas palustris TIE-1 6408289 YP_001989674.1 CDS Rpal_0639 NC_011004.1 691459 692937 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nha:Nham_3706 histidine kinase; integral membrane sensor signal transduction histidine kinase 691459..692937 Rhodopseudomonas palustris TIE-1 6408290 YP_001989675.1 CDS Rpal_0640 NC_011004.1 693685 694212 R KEGG: tfu:Tfu_0999 hypothetical protein; hypothetical protein complement(693685..694212) Rhodopseudomonas palustris TIE-1 6408292 YP_001989676.1 CDS Rpal_0641 NC_011004.1 694225 695016 R PFAM: peptidase S24 and S26 domain protein; KEGG: sbn:Sbal195_2114 phage repressor; phage repressor complement(694225..695016) Rhodopseudomonas palustris TIE-1 6408293 YP_001989677.1 CDS Rpal_0642 NC_011004.1 695097 695396 D KEGG: azc:AZC_2125 transcriptional regulator; Nlp family transcriptional regulator 695097..695396 Rhodopseudomonas palustris TIE-1 6408294 YP_001989678.1 CDS Rpal_0643 NC_011004.1 695393 695665 D hypothetical protein 695393..695665 Rhodopseudomonas palustris TIE-1 6408295 YP_001989679.1 CDS Rpal_0644 NC_011004.1 695730 696545 D SMART: ParB domain protein nuclease; KEGG: xau:Xaut_4529 ParB domain protein nuclease; ParB domain-containing protein nuclease 695730..696545 Rhodopseudomonas palustris TIE-1 6408296 YP_001989680.1 CDS Rpal_0645 NC_011004.1 696550 697002 D KEGG: azc:AZC_2127 hypothetical protein; hypothetical protein 696550..697002 Rhodopseudomonas palustris TIE-1 6408297 YP_001989681.1 CDS Rpal_0646 NC_011004.1 696999 699173 D PFAM: Integrase catalytic region; Transposase-like Mu; KEGG: azc:AZC_2128 transposase protein A; integrase catalytic subunit 696999..699173 Rhodopseudomonas palustris TIE-1 6408298 YP_001989682.1 CDS Rpal_0647 NC_011004.1 699185 699955 D KEGG: azc:AZC_2129 transposase protein B; transposase protein B 699185..699955 Rhodopseudomonas palustris TIE-1 6408299 YP_001989683.1 CDS Rpal_0648 NC_011004.1 699957 700598 D KEGG: azc:AZC_2130 hypothetical protein; hypothetical protein 699957..700598 Rhodopseudomonas palustris TIE-1 6408300 YP_001989684.1 CDS Rpal_0649 NC_011004.1 700598 700984 D KEGG: azc:AZC_2131 hypothetical protein; hypothetical protein 700598..700984 Rhodopseudomonas palustris TIE-1 6408301 YP_001989685.1 CDS Rpal_0650 NC_011004.1 700981 701607 D PFAM: Chromosomal replication initiator DnaA domain; KEGG: azc:AZC_2132 chromosomal replication initiator protein; Chromosomal replication initiator DnaA domain 700981..701607 Rhodopseudomonas palustris TIE-1 6408302 YP_001989686.1 CDS Rpal_0651 NC_011004.1 701600 701845 D hypothetical protein 701600..701845 Rhodopseudomonas palustris TIE-1 6408303 YP_001989687.1 CDS Rpal_0652 NC_011004.1 701838 702488 D KEGG: azc:AZC_2133 hypothetical protein; hypothetical protein 701838..702488 Rhodopseudomonas palustris TIE-1 6408304 YP_001989688.1 CDS Rpal_0653 NC_011004.1 703103 703315 D hypothetical protein 703103..703315 Rhodopseudomonas palustris TIE-1 6408305 YP_001989689.1 CDS Rpal_0654 NC_011004.1 703312 703539 D KEGG: aav:Aave_2922 hypothetical protein; hypothetical protein 703312..703539 Rhodopseudomonas palustris TIE-1 6408306 YP_001989690.1 CDS Rpal_0655 NC_011004.1 703542 703742 D hypothetical protein 703542..703742 Rhodopseudomonas palustris TIE-1 6408307 YP_001989691.1 CDS Rpal_0656 NC_011004.1 703739 704167 D response regulator receiver protein 703739..704167 Rhodopseudomonas palustris TIE-1 6408308 YP_001989692.1 CDS Rpal_0657 NC_011004.1 704164 704916 D KEGG: mag:amb0461 hypothetical protein; hypothetical protein 704164..704916 Rhodopseudomonas palustris TIE-1 6408309 YP_001989693.1 CDS Rpal_0658 NC_011004.1 704913 705521 D KEGG: azc:AZC_2134 Mu-like prophage protein GP16; Mu-like prophage protein GP16 704913..705521 Rhodopseudomonas palustris TIE-1 6408310 YP_001989694.1 CDS Rpal_0659 NC_011004.1 705524 705700 D hypothetical protein 705524..705700 Rhodopseudomonas palustris TIE-1 6408311 YP_001989695.1 CDS Rpal_0660 NC_011004.1 705746 705979 D KEGG: rsq:Rsph17025_2113 hypothetical protein; hypothetical protein 705746..705979 Rhodopseudomonas palustris TIE-1 6408312 YP_001989696.1 CDS Rpal_0661 NC_011004.1 705976 706386 D KEGG: azc:AZC_2135 hypothetical protein; hypothetical protein 705976..706386 Rhodopseudomonas palustris TIE-1 6408313 YP_001989697.1 CDS Rpal_0662 NC_011004.1 706503 707897 D PFAM: peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: rsq:Rsph17025_2109 N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 706503..707897 Rhodopseudomonas palustris TIE-1 6408314 YP_001989698.1 CDS Rpal_0663 NC_011004.1 707910 708122 D hypothetical protein 707910..708122 Rhodopseudomonas palustris TIE-1 6408315 YP_001989699.1 CDS Rpal_0664 NC_011004.1 708119 708517 D KEGG: ade:Adeh_0433 exonuclease SbcC; exonuclease SbcC 708119..708517 Rhodopseudomonas palustris TIE-1 6408316 YP_001989700.1 CDS Rpal_0665 NC_011004.1 708444 708719 D hypothetical protein 708444..708719 Rhodopseudomonas palustris TIE-1 6408317 YP_001989701.1 CDS Rpal_0666 NC_011004.1 708716 708937 D TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger DksA/TraR C4-type; KEGG: cvi:CV_0352 hypothetical protein; TraR/DksA family transcriptional regulator 708716..708937 Rhodopseudomonas palustris TIE-1 6408318 YP_001989702.1 CDS Rpal_0667 NC_011004.1 708937 709392 D KEGG: xau:Xaut_4506 hypothetical protein; hypothetical protein 708937..709392 Rhodopseudomonas palustris TIE-1 6408319 YP_001989703.1 CDS Rpal_0668 NC_011004.1 709389 709700 D KEGG: xau:Xaut_4505 hypothetical protein; hypothetical protein 709389..709700 Rhodopseudomonas palustris TIE-1 6408320 YP_001989704.1 CDS Rpal_0669 NC_011004.1 709705 710283 D KEGG: xau:Xaut_4504 Mu-like prophage FluMu protein GP27; Mu-like prophage FluMu protein GP27 709705..710283 Rhodopseudomonas palustris TIE-1 6408321 YP_001989705.1 CDS Rpal_0670 NC_011004.1 710280 711605 D PFAM: protein of unknown function DUF264; KEGG: xau:Xaut_4503 protein of unknown function DUF264; hypothetical protein 710280..711605 Rhodopseudomonas palustris TIE-1 6408322 YP_001989706.1 CDS Rpal_0671 NC_011004.1 711599 713191 D PFAM: protein of unknown function DUF935; KEGG: azc:AZC_2143 Mu-like prophage protein GP29; hypothetical protein 711599..713191 Rhodopseudomonas palustris TIE-1 6408323 YP_001989707.1 CDS Rpal_0672 NC_011004.1 713194 714375 D PFAM: head morphogenesis protein SPP1 gp7; KEGG: azc:AZC_2144 phage Mu protein F like protein; head morphogenesis protein SPP1 gp7 713194..714375 Rhodopseudomonas palustris TIE-1 6408324 YP_001989708.1 CDS Rpal_0673 NC_011004.1 714647 715609 D KEGG: azc:AZC_2147 prophage MuSo2 protein; prophage MuSo2 protein 714647..715609 Rhodopseudomonas palustris TIE-1 6408325 YP_001989709.1 CDS Rpal_0674 NC_011004.1 715609 715998 D KEGG: pol:Bpro_3746 hypothetical protein; hypothetical protein 715609..715998 Rhodopseudomonas palustris TIE-1 6408326 YP_001989710.1 CDS Rpal_0675 NC_011004.1 716133 717095 D KEGG: btr:Btr_2623 hypothetical protein; hypothetical protein 716133..717095 Rhodopseudomonas palustris TIE-1 6408328 YP_001989711.1 CDS Rpal_0676 NC_011004.1 717108 717407 D KEGG: swd:Swoo_3561 translation initiation factor IF-2; translation initiation factor IF-2 717108..717407 Rhodopseudomonas palustris TIE-1 6408329 YP_001989712.1 CDS Rpal_0677 NC_011004.1 717511 717795 D hypothetical protein 717511..717795 Rhodopseudomonas palustris TIE-1 6408330 YP_001989713.1 CDS Rpal_0678 NC_011004.1 717792 718019 D hypothetical protein 717792..718019 Rhodopseudomonas palustris TIE-1 6408331 YP_001989714.1 CDS Rpal_0679 NC_011004.1 718019 718492 D KEGG: azc:AZC_2151 hypothetical protein; hypothetical protein 718019..718492 Rhodopseudomonas palustris TIE-1 6408332 YP_001989715.1 CDS Rpal_0680 NC_011004.1 718492 718986 D TIGRFAM: phage virion morphogenesis protein; KEGG: azc:AZC_2152 prophage MuSo2; phage virion morphogenesis protein 718492..718986 Rhodopseudomonas palustris TIE-1 6408333 YP_001989716.1 CDS Rpal_0681 NC_011004.1 718983 719570 D KEGG: azc:AZC_2153 hypothetical protein; hypothetical protein 718983..719570 Rhodopseudomonas palustris TIE-1 6408334 YP_001989717.1 CDS Rpal_0682 NC_011004.1 719567 720187 D KEGG: azc:AZC_2154 phage baseplate assembly protein V; hypothetical protein 719567..720187 Rhodopseudomonas palustris TIE-1 6408335 YP_001989718.1 CDS Rpal_0683 NC_011004.1 720193 720474 D hypothetical protein 720193..720474 Rhodopseudomonas palustris TIE-1 6408336 YP_001989719.1 CDS Rpal_0684 NC_011004.1 720478 720894 D KEGG: azc:AZC_2156 phage GP25 protein; hypothetical protein 720478..720894 Rhodopseudomonas palustris TIE-1 6408337 YP_001989720.1 CDS Rpal_0685 NC_011004.1 720891 721829 D PFAM: Baseplate J family protein; KEGG: nha:Nham_3331 baseplate J-like protein; baseplate J family protein 720891..721829 Rhodopseudomonas palustris TIE-1 6408338 YP_001989721.1 CDS Rpal_0686 NC_011004.1 721826 723085 D TIGRFAM: phage tail protein I; PFAM: ATP-dependent DNA ligase, conserved site; KEGG: nha:Nham_3330 phage tail protein I; phage tail protein I 721826..723085 Rhodopseudomonas palustris TIE-1 6408339 YP_001989722.1 CDS Rpal_0687 NC_011004.1 723097 725418 D KEGG: nha:Nham_3329 hypothetical protein; hypothetical protein 723097..725418 Rhodopseudomonas palustris TIE-1 6408340 YP_001989723.1 CDS Rpal_0688 NC_011004.1 725422 725625 D hypothetical protein 725422..725625 Rhodopseudomonas palustris TIE-1 6408341 YP_001989724.1 CDS Rpal_0689 NC_011004.1 725647 727221 D KEGG: btr:Btr_2267 hypothetical protein; hypothetical protein 725647..727221 Rhodopseudomonas palustris TIE-1 6408342 YP_001989725.1 CDS Rpal_0690 NC_011004.1 727280 727924 D KEGG: nha:Nham_2379 hypothetical protein; hypothetical protein 727280..727924 Rhodopseudomonas palustris TIE-1 6408343 YP_001989726.1 CDS Rpal_0691 NC_011004.1 728021 729478 D KEGG: oan:Oant_1491 hypothetical protein; Phage tail sheath protein FI-like protein 728021..729478 Rhodopseudomonas palustris TIE-1 6408344 YP_001989727.1 CDS Rpal_0692 NC_011004.1 729491 730012 D KEGG: btr:Btr_2610 hypothetical protein; hypothetical protein 729491..730012 Rhodopseudomonas palustris TIE-1 6408345 YP_001989728.1 CDS Rpal_0693 NC_011004.1 730294 730752 D KEGG: azc:AZC_2164 hypothetical protein; hypothetical protein 730294..730752 Rhodopseudomonas palustris TIE-1 6408346 YP_001989729.1 CDS Rpal_0694 NC_011004.1 730755 730913 D hypothetical protein 730755..730913 Rhodopseudomonas palustris TIE-1 6408347 YP_001989730.1 CDS Rpal_0695 NC_011004.1 730910 733198 D TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: azc:AZC_2165 phage-related tail protein; phage tail tape measure protein, TP901 family 730910..733198 Rhodopseudomonas palustris TIE-1 6408348 YP_001989731.1 CDS Rpal_0696 NC_011004.1 733213 733578 D KEGG: btr:Btr_2606 phage tail protein; phage tail protein 733213..733578 Rhodopseudomonas palustris TIE-1 6408349 YP_001989732.1 CDS Rpal_0697 NC_011004.1 733575 733811 D PFAM: tail X family protein; KEGG: nha:Nham_3320 phage tail X; tail X family protein 733575..733811 Rhodopseudomonas palustris TIE-1 6408350 YP_001989733.1 CDS Rpal_0698 NC_011004.1 733808 734884 D PFAM: late control D family protein; KEGG: btr:Btr_1650 hypothetical protein; late control D family protein 733808..734884 Rhodopseudomonas palustris TIE-1 6408351 YP_001989734.1 CDS Rpal_0699 NC_011004.1 734897 735313 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: nha:Nham_0534 rare lipoprotein A; rare lipoprotein A 734897..735313 Rhodopseudomonas palustris TIE-1 6408352 YP_001989735.1 CDS Rpal_0700 NC_011004.1 735313 735660 D hypothetical protein 735313..735660 Rhodopseudomonas palustris TIE-1 6408353 YP_001989736.1 CDS Rpal_0701 NC_011004.1 735980 736696 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: azc:AZC_2169 site-specific DNA-methyltransferase; DNA methylase N-4/N-6 domain-containing protein 735980..736696 Rhodopseudomonas palustris TIE-1 6408354 YP_001989737.1 CDS Rpal_0702 NC_011004.1 736760 737029 D hypothetical protein 736760..737029 Rhodopseudomonas palustris TIE-1 6408355 YP_001989738.1 CDS Rpal_0703 NC_011004.1 737106 737615 R KEGG: bja:bll3690 hypothetical protein; hypothetical protein complement(737106..737615) Rhodopseudomonas palustris TIE-1 6408356 YP_001989739.1 CDS Rpal_0704 NC_011004.1 737642 738970 R KEGG: bja:bll3691 hypothetical protein; hypothetical protein complement(737642..738970) Rhodopseudomonas palustris TIE-1 6408357 YP_001989740.1 CDS Rpal_0705 NC_011004.1 739047 741449 R KEGG: bja:bll3692 hypothetical protein; hypothetical protein complement(739047..741449) Rhodopseudomonas palustris TIE-1 6408358 YP_001989741.1 CDS Rpal_0706 NC_011004.1 741952 742650 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 741952..742650 Rhodopseudomonas palustris TIE-1 6408359 YP_001989742.1 CDS Rpal_0707 NC_011004.1 742793 743617 D PFAM: flagellin domain protein; KEGG: bja:blr3695 probable flagellin; flagellin domain-containing protein 742793..743617 Rhodopseudomonas palustris TIE-1 6408360 YP_001989743.1 CDS Rpal_0708 NC_011004.1 743679 745394 D PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: bbt:BBta_3160 flagellar hook-associated protein 2 (HAP2, FliD protein); flagellar hook-associated 2 domain-containing protein 743679..745394 Rhodopseudomonas palustris TIE-1 6408361 YP_001989744.1 CDS Rpal_0709 NC_011004.1 745394 745786 D KEGG: bbt:BBta_3161 flagellar protein FliS; flagellar protein FliS 745394..745786 Rhodopseudomonas palustris TIE-1 6408362 YP_001989745.1 CDS Rpal_0710 NC_011004.1 745882 746181 D KEGG: bja:blr3698 hypothetical protein; hypothetical protein 745882..746181 Rhodopseudomonas palustris TIE-1 6408363 YP_001989746.1 CDS Rpal_0711 NC_011004.1 746559 747227 D PFAM: flagellar hook capping protein; KEGG: bbt:BBta_3164 basal-body rod modification protein FlgD; flagellar hook capping protein 746559..747227 Rhodopseudomonas palustris TIE-1 6408364 YP_001989747.1 CDS flgE NC_011004.1 747247 748512 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 747247..748512 Rhodopseudomonas palustris TIE-1 6408365 YP_001989748.1 CDS Rpal_0713 NC_011004.1 748518 748775 D KEGG: bra:BRADO4883 hypothetical protein; hypothetical protein 748518..748775 Rhodopseudomonas palustris TIE-1 6408366 YP_001989749.1 CDS Rpal_0714 NC_011004.1 748800 749252 D KEGG: bbt:BBta_3167 hypothetical protein; hypothetical protein 748800..749252 Rhodopseudomonas palustris TIE-1 6408367 YP_001989750.1 CDS Rpal_0715 NC_011004.1 749274 751037 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; flagellin hook IN repeat protein; protein of unknown function DUF1078 domain protein; KEGG: bja:blr3703 probable flagellar hook-associated protein; flagellar hook-associated protein FlgK 749274..751037 Rhodopseudomonas palustris TIE-1 6408368 YP_001989751.1 CDS flgL NC_011004.1 751053 751964 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 751053..751964 Rhodopseudomonas palustris TIE-1 6408369 YP_001989752.1 CDS Rpal_0717 NC_011004.1 751984 752760 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pna:Pnap_2128 enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase complement(751984..752760) Rhodopseudomonas palustris TIE-1 6408370 YP_001989753.1 CDS Rpal_0718 NC_011004.1 752788 754431 R AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate; cyclohexanecarboxylate-CoA ligase complement(752788..754431) Rhodopseudomonas palustris TIE-1 6408371 YP_001989754.1 CDS Rpal_0719 NC_011004.1 754488 755639 R TIGRFAM: cyclohexanecarboxyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: reu:Reut_B3917 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; cyclohexanecarboxyl-CoA dehydrogenase complement(754488..755639) Rhodopseudomonas palustris TIE-1 6408372 YP_001989755.1 CDS Rpal_0720 NC_011004.1 755704 756486 R TIGRFAM: 2-ketocyclohexanecarboxyl-CoA hydrolase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pna:Pnap_2124 naphthoate synthase; 2-ketocyclohexanecarboxyl-CoA hydrolase complement(755704..756486) Rhodopseudomonas palustris TIE-1 6408373 YP_001989756.1 CDS Rpal_0721 NC_011004.1 756515 757282 R TIGRFAM: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2123 short-chain dehydrogenase/reductase SDR; 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase complement(756515..757282) Rhodopseudomonas palustris TIE-1 6408374 YP_001989757.1 CDS Rpal_0722 NC_011004.1 757405 757932 D PFAM: regulatory protein MarR; KEGG: reu:Reut_B3914 transcriptional regulator, MarR family; MarR family transcriptional regulator 757405..757932 Rhodopseudomonas palustris TIE-1 6408375 YP_001989758.1 CDS Rpal_0723 NC_011004.1 758021 759025 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_2134 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase zinc-binding domain-containing protein 758021..759025 Rhodopseudomonas palustris TIE-1 6408376 YP_001989759.1 CDS Rpal_0724 NC_011004.1 759194 760378 D TIGRFAM: benzoyl-CoA reductase, subunit C; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: mag:amb2141 C-subunit of benzoyl-CoA reductase; benzoyl-CoA reductase subunit C 759194..760378 Rhodopseudomonas palustris TIE-1 6408377 YP_001989760.1 CDS Rpal_0725 NC_011004.1 760375 761685 D TIGRFAM: benzoyl-CoA reductase, subunit B; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: mag:amb2140 B-subunit of benzoyl-CoA reductase; benzoyl-CoA reductase subunit B 760375..761685 Rhodopseudomonas palustris TIE-1 6408378 YP_001989761.1 CDS Rpal_0726 NC_011004.1 761697 763010 D TIGRFAM: CoA-substrate-specific enzyme activase; benzoyl-CoA reductase, subunit A; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: mag:amb2139 activator of 2-hydroxyglutaryl-CoA dehydratase; benzoyl-CoA reductase subunit A 761697..763010 Rhodopseudomonas palustris TIE-1 6408379 YP_001989762.1 CDS Rpal_0727 NC_011004.1 763104 763937 D TIGRFAM: CoA-substrate-specific enzyme activase; benzoyl-CoA reductase, subunit D; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: mag:amb2138 D-subunit of benzoyl-CoA reductase; benzoyl-CoA reductase subunit D 763104..763937 Rhodopseudomonas palustris TIE-1 6408380 YP_001989763.1 CDS Rpal_0728 NC_011004.1 764053 765627 D TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_0216 benzoate-CoA ligase family; benzoate-CoA ligase family 764053..765627 Rhodopseudomonas palustris TIE-1 6408381 YP_001989764.1 CDS Rpal_0729 NC_011004.1 765644 765889 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mms:mma_3134 ferredoxin; 4Fe-4S ferredoxin 765644..765889 Rhodopseudomonas palustris TIE-1 6408382 YP_001989765.1 CDS Rpal_0730 NC_011004.1 765938 766408 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; hypothetical protein; KEGG: mag:amb3391 predicted transcriptional regulator; BadM/Rrf2 family transcriptional regulator complement(765938..766408) Rhodopseudomonas palustris TIE-1 6408383 YP_001989766.1 CDS Rpal_0731 NC_011004.1 766463 766942 R PFAM: GCN5-related N-acetyltransferase; KEGG: gme:Gmet_2096 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(766463..766942) Rhodopseudomonas palustris TIE-1 6408384 YP_001989767.1 CDS Rpal_0732 NC_011004.1 767041 767763 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mag:amb2870 ABC-type branched-chain amino acid transport systems, ATPase component; branched-chain amino acid ABC transporter ATPase complement(767041..767763) Rhodopseudomonas palustris TIE-1 6408385 YP_001989768.1 CDS Rpal_0733 NC_011004.1 767760 769553 R PFAM: inner-membrane translocator; ABC transporter; SMART: ATPase AAA; KEGG: xau:Xaut_2704 ABC transporter; ABC transporter complement(767760..769553) Rhodopseudomonas palustris TIE-1 6408386 YP_001989769.1 CDS Rpal_0734 NC_011004.1 769550 770410 R PFAM: inner-membrane translocator; KEGG: pna:Pnap_1906 inner-membrane translocator; inner-membrane translocator complement(769550..770410) Rhodopseudomonas palustris TIE-1 6408387 YP_001989770.1 CDS Rpal_0735 NC_011004.1 770496 771674 R PFAM: extracellular ligand-binding receptor; KEGG: dar:Daro_2772 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(770496..771674) Rhodopseudomonas palustris TIE-1 6408388 YP_001989771.1 CDS Rpal_0736 NC_011004.1 771851 773470 R TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr1077 acetyl-CoA synthetase; benzoate-CoA ligase family complement(771851..773470) Rhodopseudomonas palustris TIE-1 6408389 YP_001989772.1 CDS Rpal_0737 NC_011004.1 773637 774128 D TIGRFAM: 4-hydroxybenzoyl-CoA reductase, gamma subunit; PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: eba:ebA3604 4-hydroxybenzoyl-CoA reductase, gamma subunit; 4-hydroxybenzoyl-CoA reductase subunit gamma 773637..774128 Rhodopseudomonas palustris TIE-1 6408390 YP_001989773.1 CDS Rpal_0738 NC_011004.1 774125 776458 D TIGRFAM: 4-hydroxybenzoyl-CoA reductase, alpha subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: eba:ebA3603 4-hydroxybenzoyl-CoA reductase, alpha subunit; 4-hydroxybenzoyl-CoA reductase subunit alpha 774125..776458 Rhodopseudomonas palustris TIE-1 6408391 YP_001989774.1 CDS Rpal_0739 NC_011004.1 776455 777438 D TIGRFAM: 4-hydroxybenzoyl-CoA reductase, beta subunit; PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: eba:ebA3602 4-hydroxybenzoyl-CoA reductase, beta subunit; 4-hydroxybenzoyl-CoA reductase subunit beta 776455..777438 Rhodopseudomonas palustris TIE-1 6408392 YP_001989775.1 CDS Rpal_0740 NC_011004.1 777421 778188 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: sil:SPOA0323 cyclic nucleotide-binding protein; Crp/Fnr family transcriptional regulator complement(777421..778188) Rhodopseudomonas palustris TIE-1 6408393 YP_001989776.1 CDS Rpal_0741 NC_011004.1 778380 779492 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_3153 alcohol dehydrogenase, zinc-binding protein; alcohol dehydrogenase GroES domain-containing protein 778380..779492 Rhodopseudomonas palustris TIE-1 6408394 YP_001989777.1 CDS Rpal_0742 NC_011004.1 779528 780349 D PFAM: alpha/beta hydrolase fold; KEGG: bbt:BBta_0748 hydrolase (alpha/beta hydrolase superfamily); alpha/beta hydrolase fold protein 779528..780349 Rhodopseudomonas palustris TIE-1 6408395 YP_001989778.1 CDS Rpal_0743 NC_011004.1 780478 782172 D cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA; benzoyl-CoA-dihydrodiol lyase 780478..782172 Rhodopseudomonas palustris TIE-1 6408396 YP_001989779.1 CDS Rpal_0744 NC_011004.1 782343 783794 D TIGRFAM: benzoyl-CoA oxygenase, B subunit; KEGG: bja:blr1081 probable benzoyl-CoA oxygenase component; benzoyl-CoA oxygenase subunit B 782343..783794 Rhodopseudomonas palustris TIE-1 6408397 YP_001989780.1 CDS Rpal_0745 NC_011004.1 784122 787106 D TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: ade:Adeh_2791 trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein 784122..787106 Rhodopseudomonas palustris TIE-1 6408398 YP_001989781.1 CDS Rpal_0746 NC_011004.1 787130 789163 R PFAM: radical SAM domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bra:BRADO0847 conserved hypothetical protein; radical SAM domain; radical SAM domain-containing protein complement(787130..789163) Rhodopseudomonas palustris TIE-1 6408399 YP_001989782.1 CDS Rpal_0747 NC_011004.1 789230 789793 R KEGG: fre:Franean1_3028 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(789230..789793) Rhodopseudomonas palustris TIE-1 6408400 YP_001989783.1 CDS Rpal_0748 NC_011004.1 789992 791023 D PFAM: secretion protein HlyD family protein; KEGG: rle:pRL90043 transmembrane transport protein; secretion protein HlyD family protein 789992..791023 Rhodopseudomonas palustris TIE-1 6408401 YP_001989784.1 CDS Rpal_0749 NC_011004.1 791020 793734 D PFAM: ABC transporter; ABC transporter; SMART: ATPase AAA; KEGG: mex:Mext_0565 ABC transporter; ABC transporter 791020..793734 Rhodopseudomonas palustris TIE-1 6408402 YP_001989785.1 CDS Rpal_0750 NC_011004.1 793737 794864 D PFAM: ABC transporter; KEGG: sil:SPO0109 hypothetical protein; ABC transporter 793737..794864 Rhodopseudomonas palustris TIE-1 6408403 YP_001989786.1 CDS Rpal_0751 NC_011004.1 794872 795051 R KEGG: bbt:BBta_4009 hypothetical protein; hypothetical protein complement(794872..795051) Rhodopseudomonas palustris TIE-1 6408404 YP_001989787.1 CDS Rpal_0752 NC_011004.1 795194 796069 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bja:blr5288 transcriptional regulatory protein; IclR family transcriptional regulator 795194..796069 Rhodopseudomonas palustris TIE-1 6408405 YP_001989788.1 CDS Rpal_0754 NC_011004.1 797252 797899 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bra:BRADO5348 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(797252..797899) Rhodopseudomonas palustris TIE-1 6408407 YP_001989789.1 CDS Rpal_0755 NC_011004.1 797880 798464 R TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: bja:blr1228 guanylate kinase; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN complement(797880..798464) Rhodopseudomonas palustris TIE-1 6408408 YP_001989790.1 CDS Rpal_0756 NC_011004.1 798461 799639 R TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bja:blr1227 phosphonate metabolism protein; phosphonate metabolism protein PhnM complement(798461..799639) Rhodopseudomonas palustris TIE-1 6408409 YP_001989791.1 CDS Rpal_0757 NC_011004.1 799636 800346 R KEGG: bja:blr1226 phosphonate uptake transporter ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter; SMART: ATPase AAA; phosphonate C-P lyase system protein PhnL complement(799636..800346) Rhodopseudomonas palustris TIE-1 6408410 YP_001989792.1 CDS phnK NC_011004.1 800346 801164 R KEGG: bra:BRADO5352 phosphonates transport ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter; SMART: ATPase AAA; phosphonate C-P lyase system protein PhnK complement(800346..801164) Rhodopseudomonas palustris TIE-1 6408411 YP_001989793.1 CDS Rpal_0759 NC_011004.1 801157 802035 R PFAM: phosphonate metabolism PhnJ; KEGG: bbt:BBta_5845 PhnJ protein, phosphonate metabolism; phosphonate metabolism PhnJ complement(801157..802035) Rhodopseudomonas palustris TIE-1 6408412 YP_001989794.1 CDS Rpal_0760 NC_011004.1 802032 803129 R PFAM: phosphonate metabolism; KEGG: bja:blr1223 phosphonate metabolism protein; phosphonate metabolism protein complement(802032..803129) Rhodopseudomonas palustris TIE-1 6408413 YP_001989795.1 CDS phnH NC_011004.1 803133 803735 R TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: bja:blr1222 carbon-phosphorus lyase complex subunit; carbon-phosphorus lyase complex subunit complement(803133..803735) Rhodopseudomonas palustris TIE-1 6408414 YP_001989796.1 CDS Rpal_0762 NC_011004.1 803738 804211 R TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; KEGG: bja:blr1221 phosphonate metabolism protein; phosphonate C-P lyase system protein PhnG complement(803738..804211) Rhodopseudomonas palustris TIE-1 6408415 YP_001989797.1 CDS Rpal_0763 NC_011004.1 804323 805051 D TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bbt:BBta_5849 transcriptional regulator, GntR family, with an UbiC transcription regulator-associated domain; GntR family transcriptional regulator 804323..805051 Rhodopseudomonas palustris TIE-1 6408416 YP_001989798.1 CDS Rpal_0764 NC_011004.1 805073 805228 R hypothetical protein complement(805073..805228) Rhodopseudomonas palustris TIE-1 6408417 YP_001989799.1 CDS Rpal_0765 NC_011004.1 805375 806241 R TIGRFAM: phosphonate ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO5363 PhnE protein, phosphonate ABC transporter membrane protein; phosphonate ABC transporter inner membrane subunit complement(805375..806241) Rhodopseudomonas palustris TIE-1 6408418 YP_001989800.1 CDS Rpal_0766 NC_011004.1 806238 807119 R TIGRFAM: phosphonate ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: xau:Xaut_1320 phosphonate ABC transporter inner membrane subunit; phosphonate ABC transporter inner membrane subunit complement(806238..807119) Rhodopseudomonas palustris TIE-1 6408419 YP_001989801.1 CDS Rpal_0767 NC_011004.1 807188 808096 R TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate binding protein; KEGG: xau:Xaut_1321 phosphonate ABC transporter periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate binding protein complement(807188..808096) Rhodopseudomonas palustris TIE-1 6408420 YP_001989802.1 CDS Rpal_0768 NC_011004.1 808206 809018 R KEGG: bja:bll7947 phosphonates transport system nucleotide binding/ATPase protein; TIGRFAM: phosphonate ABC transporter ATPase subunit; PFAM: ABC transporter; SMART: ATPase AAA; phosphonate ABC transporter ATPase complement(808206..809018) Rhodopseudomonas palustris TIE-1 6408421 YP_001989803.1 CDS Rpal_0769 NC_011004.1 809198 809875 D TIGRFAM: phosphonate metabolim protein, transferase hexapeptide repeat family; KEGG: bbt:BBta_5859 acetyltransferase; phosphonate metabolism protein 809198..809875 Rhodopseudomonas palustris TIE-1 6408422 YP_001989804.1 CDS Rpal_0770 NC_011004.1 809872 811065 D TIGRFAM: phosphonate metabolism protein PhnM; PFAM: Amidohydrolase 3; KEGG: bja:blr7949 phosphonate metabolism protein; phosphonate metabolism protein PhnM 809872..811065 Rhodopseudomonas palustris TIE-1 6408423 YP_001989805.1 CDS Rpal_0771 NC_011004.1 811088 811792 D TIGRFAM: phosphonate metabolism protein; PFAM: protein of unknown function DUF1045; KEGG: bja:blr7950 hypothetical protein; phosphonate metabolism protein 811088..811792 Rhodopseudomonas palustris TIE-1 6408424 YP_001989806.1 CDS Rpal_0772 NC_011004.1 811789 812769 R KEGG: mpt:Mpe_A3544 hypothetical protein; hypothetical protein complement(811789..812769) Rhodopseudomonas palustris TIE-1 6408425 YP_001989807.1 CDS Rpal_0773 NC_011004.1 813014 813208 D hypothetical protein 813014..813208 Rhodopseudomonas palustris TIE-1 6408426 YP_001989808.1 CDS Rpal_0774 NC_011004.1 813501 814244 R KEGG: ecp:ECP_1925 hypothetical protein; hypothetical protein complement(813501..814244) Rhodopseudomonas palustris TIE-1 6408427 YP_001989809.1 CDS Rpal_0776 NC_011004.1 815154 815630 D PFAM: protein of unknown function DUF123; KEGG: rru:Rru_A0067 protein of unknown function DUF123; hypothetical protein 815154..815630 Rhodopseudomonas palustris TIE-1 6408429 YP_001989810.1 CDS Rpal_0777 NC_011004.1 815608 815931 R PFAM: CutA1 divalent ion tolerance protein; KEGG: cte:CT1607 periplasmic divalent cation tolerance protein CutA; CutA1 divalent ion tolerance protein complement(815608..815931) Rhodopseudomonas palustris TIE-1 6408430 YP_001989811.1 CDS Rpal_0778 NC_011004.1 816031 816246 D TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: aba:Acid345_1009 hypothetical protein; FmdB family regulatory protein 816031..816246 Rhodopseudomonas palustris TIE-1 6408431 YP_001989812.1 CDS Rpal_0779 NC_011004.1 816352 816864 D KEGG: osa:4324453 hypothetical protein; hypothetical protein 816352..816864 Rhodopseudomonas palustris TIE-1 6408432 YP_001989813.1 CDS Rpal_0780 NC_011004.1 817036 817524 D PFAM: PEBP family protein; KEGG: lbl:LBL_0708 phospholipid binding protein; PEBP family protein 817036..817524 Rhodopseudomonas palustris TIE-1 6408433 YP_001989814.1 CDS Rpal_0781 NC_011004.1 817567 817827 D hypothetical protein 817567..817827 Rhodopseudomonas palustris TIE-1 6408434 YP_001989815.1 CDS Rpal_0782 NC_011004.1 818074 818775 R KEGG: bbt:BBta_3155 Cob(II)yrinic acid a,c-diamide reductase, BluB; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; cob(II)yrinic acid a,c-diamide reductase complement(818074..818775) Rhodopseudomonas palustris TIE-1 6408435 YP_001989816.1 CDS Rpal_0783 NC_011004.1 818772 819827 R KEGG: cak:Caul_2742 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(818772..819827) Rhodopseudomonas palustris TIE-1 6408436 YP_001989817.1 CDS Rpal_0784 NC_011004.1 820232 820663 D PFAM: protein of unknown function DUF1636; KEGG: mrd:Mrad2831_3113 protein of unknown function DUF1636; hypothetical protein 820232..820663 Rhodopseudomonas palustris TIE-1 6408437 YP_001989818.1 CDS Rpal_0785 NC_011004.1 820660 821190 D PFAM: cobalbumin biosynthesis protein; KEGG: mag:amb4425 adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; adenosylcobinamide-phosphate guanylyltransferase 820660..821190 Rhodopseudomonas palustris TIE-1 6408438 YP_001989819.1 CDS Rpal_0786 NC_011004.1 821194 822198 D TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mrd:Mrad2831_3114 cobalamin biosynthesis protein CobW; cobalamin biosynthesis protein CobW 821194..822198 Rhodopseudomonas palustris TIE-1 6408439 YP_001989820.1 CDS cobN NC_011004.1 822333 826082 D with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 822333..826082 Rhodopseudomonas palustris TIE-1 6408440 YP_001989821.1 CDS Rpal_0788 NC_011004.1 826079 826705 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 826079..826705 Rhodopseudomonas palustris TIE-1 6408441 YP_001989822.1 CDS Rpal_0789 NC_011004.1 826853 828337 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 826853..828337 Rhodopseudomonas palustris TIE-1 6408442 YP_001989823.1 CDS Rpal_0790 NC_011004.1 828310 829281 R TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: sme:SMc04279 probable cobalamin biosynthesis transmembrane protein; cobalamin biosynthesis protein CobD complement(828310..829281) Rhodopseudomonas palustris TIE-1 6408443 YP_001989824.1 CDS Rpal_0791 NC_011004.1 829283 830092 R PFAM: periplasmic binding protein; KEGG: nha:Nham_3728 periplasmic binding protein; periplasmic binding protein complement(829283..830092) Rhodopseudomonas palustris TIE-1 6408444 YP_001989825.1 CDS Rpal_0792 NC_011004.1 830159 831148 D TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: bcs:BCAN_A1318 threonine-phosphate decarboxylase; L-threonine-O-3-phosphate decarboxylase 830159..831148 Rhodopseudomonas palustris TIE-1 6408445 YP_001989826.1 CDS Rpal_0793 NC_011004.1 831160 831939 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nwi:Nwi_3049 ABC transporter ATPase subunit; ABC transporter complement(831160..831939) Rhodopseudomonas palustris TIE-1 6408446 YP_001989827.1 CDS Rpal_0794 NC_011004.1 831936 832961 R PFAM: transport system permease protein; KEGG: nha:Nham_3730 transport system permease protein; transport system permease complement(831936..832961) Rhodopseudomonas palustris TIE-1 6408447 YP_001989828.1 CDS Rpal_0795 NC_011004.1 832969 834027 R TIGRFAM: high-affinity nickel-transporter; KEGG: bmv:BMASAVP1_A1617 high-affinity nickel transport protein; high-affinity nickel-transporter complement(832969..834027) Rhodopseudomonas palustris TIE-1 6408448 YP_001989829.1 CDS Rpal_0796 NC_011004.1 834360 834683 R PFAM: small multidrug resistance protein; KEGG: bra:BRADO5344 quaternary ammonium compound-resistance protein SugE (SMR family); small multidrug resistance protein complement(834360..834683) Rhodopseudomonas palustris TIE-1 6408449 YP_001989830.1 CDS Rpal_0797 NC_011004.1 834680 835417 R PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mlo:mlr1575 hypothetical protein; type 12 methyltransferase complement(834680..835417) Rhodopseudomonas palustris TIE-1 6408450 YP_001989831.1 CDS Rpal_0798 NC_011004.1 835570 836793 D KEGG: rsh:Rsph17029_2515 S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase; S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase 835570..836793 Rhodopseudomonas palustris TIE-1 6408451 YP_001989832.1 CDS Rpal_0799 NC_011004.1 837348 838754 D KEGG: bja:blr3941 hypothetical protein; hypothetical protein 837348..838754 Rhodopseudomonas palustris TIE-1 6408452 YP_001989833.1 CDS Rpal_0800 NC_011004.1 838765 839343 D PFAM: TadE family protein; KEGG: bja:blr3942 hypothetical protein; TadE family protein 838765..839343 Rhodopseudomonas palustris TIE-1 6408453 YP_001989834.1 CDS Rpal_0801 NC_011004.1 839356 840045 D KEGG: bja:blr3943 hypothetical protein; hypothetical protein 839356..840045 Rhodopseudomonas palustris TIE-1 6408454 YP_001989835.1 CDS Rpal_0802 NC_011004.1 840576 841469 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_3092 transcriptional regulatory protein, LysR family; LysR family transcriptional regulator 840576..841469 Rhodopseudomonas palustris TIE-1 6408455 YP_001989836.1 CDS Rpal_0803 NC_011004.1 841734 842204 D catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma 841734..842204 Rhodopseudomonas palustris TIE-1 6408456 YP_001989837.1 CDS Rpal_0804 NC_011004.1 842201 843757 D PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: bja:bll3137 NADH dehydrogenase I chain F; NADH dehydrogenase (quinone) 842201..843757 Rhodopseudomonas palustris TIE-1 6408457 YP_001989838.1 CDS Rpal_0805 NC_011004.1 843769 846615 D TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: bja:bll3136 formate dehydrogenase alpha subunit; formate dehydrogenase subunit alpha 843769..846615 Rhodopseudomonas palustris TIE-1 6408458 YP_001989839.1 CDS Rpal_0806 NC_011004.1 846615 847445 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 846615..847445 Rhodopseudomonas palustris TIE-1 6408459 YP_001989840.1 CDS Rpal_0807 NC_011004.1 847435 847650 D KEGG: bja:bsl3134 NAD-dependent formate dehydrogenase; NAD-dependent formate dehydrogenase 847435..847650 Rhodopseudomonas palustris TIE-1 6408460 YP_001989841.1 CDS Rpal_0808 NC_011004.1 847714 849363 D PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr2314 MFS permease; major facilitator superfamily protein 847714..849363 Rhodopseudomonas palustris TIE-1 6408461 YP_001989842.1 CDS Rpal_0809 NC_011004.1 849626 850879 D KEGG: bra:BRADO0326 glucose/sorbosone dehydrogenase; glucose/sorbosone dehydrogenase 849626..850879 Rhodopseudomonas palustris TIE-1 6408462 YP_001989843.1 CDS Rpal_0810 NC_011004.1 851024 851620 D KEGG: bra:BRADO0327 cytochrome C4 precursor; cytochrome C4 851024..851620 Rhodopseudomonas palustris TIE-1 6408463 YP_001989844.1 CDS Rpal_0811 NC_011004.1 851695 852804 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mxa:MXAN_3760 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 851695..852804 Rhodopseudomonas palustris TIE-1 6408464 YP_001989845.1 CDS Rpal_0812 NC_011004.1 852801 853748 D SMART: ATPase AAA; KEGG: bja:blr6138 hypothetical protein; ATPase AAA 852801..853748 Rhodopseudomonas palustris TIE-1 6408465 YP_001989846.1 CDS Rpal_0813 NC_011004.1 853748 855139 D PFAM: VWA containing CoxE family protein; KEGG: bja:blr6139 hypothetical protein; VWA containing CoxE family protein 853748..855139 Rhodopseudomonas palustris TIE-1 6408466 YP_001989847.1 CDS Rpal_0814 NC_011004.1 855316 856842 D PFAM: AMP-dependent synthetase and ligase; KEGG: bbt:BBta_0667 O-succinylbenzoate--CoA ligase; AMP-dependent synthetase and ligase 855316..856842 Rhodopseudomonas palustris TIE-1 6408467 YP_001989848.1 CDS Rpal_0815 NC_011004.1 857017 857301 R KEGG: rso:RSc2290 probable iron oxidase precursor oxidoreductase protein; iron oxidase oxidoreductase protein complement(857017..857301) Rhodopseudomonas palustris TIE-1 6408468 YP_001989849.1 CDS Rpal_0816 NC_011004.1 857441 859873 R KEGG: gur:Gura_3627 hypothetical protein; hypothetical protein complement(857441..859873) Rhodopseudomonas palustris TIE-1 6408469 YP_001989850.1 CDS Rpal_0817 NC_011004.1 859972 861594 R TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: dar:Daro_1402 Doubled CXXCH motif; cytochrome C family protein complement(859972..861594) Rhodopseudomonas palustris TIE-1 6408470 YP_001989851.1 CDS Rpal_0818 NC_011004.1 862336 863382 R KEGG: nwi:Nwi_2757 sulphate transport system permease protein 1; TIGRFAM: sulfate ABC transporter ATPase subunit; PFAM: ABC transporter; SMART: ATPase AAA; sulfate ABC transporter ATPase complement(862336..863382) Rhodopseudomonas palustris TIE-1 6408471 YP_001989852.1 CDS Rpal_0819 NC_011004.1 863372 864286 R TIGRFAM: sulfate ABC transporter inner membrane subunit; sulfate ABC transporter inner membrane subunit CysW; PFAM: ABC transporter inner membrane protein; KEGG: bja:blr1484 sulfate ABC transporter permease protein; sulfate ABC transporter permease complement(863372..864286) Rhodopseudomonas palustris TIE-1 6408472 YP_001989853.1 CDS Rpal_0820 NC_011004.1 864291 865127 R TIGRFAM: sulfate ABC transporter inner membrane subunit; sulfate ABC transporter inner membrane subunit CysT; PFAM: ABC transporter inner membrane protein; KEGG: nha:Nham_3559 sulfate ABC transporter permease protein CysT; sulfate ABC transporter permease complement(864291..865127) Rhodopseudomonas palustris TIE-1 6408473 YP_001989854.1 CDS Rpal_0821 NC_011004.1 865420 866409 R TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bbt:BBta_6977 sulfate transport protein (ABC superfamily, peri_bind); sulfate ABC transporter substrate-binding protein complement(865420..866409) Rhodopseudomonas palustris TIE-1 6408474 YP_001989855.1 CDS Rpal_0822 NC_011004.1 866534 867274 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(866534..867274) Rhodopseudomonas palustris TIE-1 6408475 YP_001989856.1 CDS Rpal_0823 NC_011004.1 867573 868442 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 867573..868442 Rhodopseudomonas palustris TIE-1 6408476 YP_001989857.1 CDS Rpal_0824 NC_011004.1 868464 870374 D KEGG: nwi:Nwi_2764 adenylylsulfate kinase; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; adenylylsulfate kinase; elongation factor Tu domain 2 protein; sulfate adenylyltransferase, large subunit 868464..870374 Rhodopseudomonas palustris TIE-1 6408477 YP_001989858.1 CDS Rpal_0825 NC_011004.1 870381 871748 R KEGG: nar:Saro_2666 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; signal transduction histidine kinase complement(870381..871748) Rhodopseudomonas palustris TIE-1 6408478 YP_001989859.1 CDS Rpal_0826 NC_011004.1 871880 872857 R KEGG: bja:bll7916 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase complement(871880..872857) Rhodopseudomonas palustris TIE-1 6408479 YP_001989860.1 CDS Rpal_0827 NC_011004.1 872858 874270 R PFAM: Amidase; KEGG: bja:bll7917 glutamyl-tRNA(Gln) amidotransferase; amidase complement(872858..874270) Rhodopseudomonas palustris TIE-1 6408480 YP_001989861.1 CDS Rpal_0828 NC_011004.1 874267 874461 R KEGG: bbt:BBta_7146 hypothetical protein; hypothetical protein complement(874267..874461) Rhodopseudomonas palustris TIE-1 6408481 YP_001989862.1 CDS Rpal_0829 NC_011004.1 874475 875533 R KEGG: bja:bll7918 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase complement(874475..875533) Rhodopseudomonas palustris TIE-1 6408482 YP_001989863.1 CDS Rpal_0830 NC_011004.1 875538 876428 R PFAM: ABC transporter inner membrane protein; KEGG: azc:AZC_1552 ABC transporter permease protein; ABC transporter inner membrane protein complement(875538..876428) Rhodopseudomonas palustris TIE-1 6408483 YP_001989864.1 CDS Rpal_0831 NC_011004.1 876448 877401 R PFAM: ABC transporter inner membrane protein; KEGG: bja:bll7920 ABC transporter permease protein; ABC transporter inner membrane protein complement(876448..877401) Rhodopseudomonas palustris TIE-1 6408484 YP_001989865.1 CDS Rpal_0832 NC_011004.1 877599 879260 R PFAM: extracellular solute-binding protein family 5; KEGG: bja:bll7921 ABC transporter substrate-binding protein; 4-phytase complement(877599..879260) Rhodopseudomonas palustris TIE-1 6408485 YP_001989866.1 CDS Rpal_0833 NC_011004.1 879448 881046 D PFAM: extracellular solute-binding protein family 5; KEGG: bja:blr7922 ABC transporter substrate-binding protein; family 5 extracellular solute-binding protein 879448..881046 Rhodopseudomonas palustris TIE-1 6408486 YP_001989867.1 CDS Rpal_0834 NC_011004.1 881377 881994 D PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rsq:Rsph17025_3983 hypothetical protein; type 12 methyltransferase 881377..881994 Rhodopseudomonas palustris TIE-1 6408487 YP_001989868.1 CDS Rpal_0835 NC_011004.1 882050 882484 R KEGG: sil:SPO0636 EF hand domain protein; EF hand domain-containing protein complement(882050..882484) Rhodopseudomonas palustris TIE-1 6408488 YP_001989869.1 CDS Rpal_0836 NC_011004.1 882505 884868 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: neu:NE1205 TonB-dependent receptor protein; TonB-dependent receptor complement(882505..884868) Rhodopseudomonas palustris TIE-1 6408489 YP_001989870.1 CDS Rpal_0837 NC_011004.1 885268 885972 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: smd:Smed_6276 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator 885268..885972 Rhodopseudomonas palustris TIE-1 6408490 YP_001989871.1 CDS Rpal_0838 NC_011004.1 886078 887019 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: mlo:mll2240 hypothetical protein; PAS/PAC sensor-containing diguanylate cyclase 886078..887019 Rhodopseudomonas palustris TIE-1 6408491 YP_001989872.1 CDS Rpal_0839 NC_011004.1 887327 889186 R KEGG: psb:Psyr_3809 hypothetical protein; hypothetical protein complement(887327..889186) Rhodopseudomonas palustris TIE-1 6408492 YP_001989873.1 CDS Rpal_0840 NC_011004.1 889183 889629 R KEGG: psb:Psyr_3808 hypothetical protein; hypothetical protein complement(889183..889629) Rhodopseudomonas palustris TIE-1 6408493 YP_001989874.1 CDS Rpal_0841 NC_011004.1 889626 890840 R KEGG: psb:Psyr_3807 hypothetical protein; hypothetical protein complement(889626..890840) Rhodopseudomonas palustris TIE-1 6408494 YP_001989875.1 CDS Rpal_0842 NC_011004.1 891569 891994 R PFAM: protein of unknown function DUF307; KEGG: bja:blr2954 hypothetical protein; hypothetical protein complement(891569..891994) Rhodopseudomonas palustris TIE-1 6408496 YP_001989876.1 CDS Rpal_0843 NC_011004.1 892203 892526 D KEGG: bja:bsr4225 hypothetical protein; hypothetical protein 892203..892526 Rhodopseudomonas palustris TIE-1 6408497 YP_001989877.1 CDS Rpal_0844 NC_011004.1 892559 894151 R PFAM: gamma-glutamyltranspeptidase; KEGG: bja:bll2229 similar to ACY1 bifunctional acylase; gamma-glutamyltransferase complement(892559..894151) Rhodopseudomonas palustris TIE-1 6408498 YP_001989878.1 CDS Rpal_0845 NC_011004.1 894270 896909 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: bja:blr4813 hypothetical protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(894270..896909) Rhodopseudomonas palustris TIE-1 6408499 YP_001989879.1 CDS Rpal_0846 NC_011004.1 897233 897634 R KEGG: sah:SaurJH1_0919 phage tape measure protein; hypothetical protein complement(897233..897634) Rhodopseudomonas palustris TIE-1 6408500 YP_001989880.1 CDS Rpal_0847 NC_011004.1 898066 898260 D KEGG: bbt:BBta_0515 hypothetical protein; hypothetical protein 898066..898260 Rhodopseudomonas palustris TIE-1 6408501 YP_001989881.1 CDS Rpal_0848 NC_011004.1 898261 899526 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xau:Xaut_4077 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(898261..899526) Rhodopseudomonas palustris TIE-1 6408502 YP_001989882.1 CDS Rpal_0849 NC_011004.1 899607 899951 R KEGG: bra:BRADO0362 cytochrome C precursor (cytochrome C552)(CycB); cytochrome C (cytochrome C552)(CycB) complement(899607..899951) Rhodopseudomonas palustris TIE-1 6408503 YP_001989883.1 CDS Rpal_0850 NC_011004.1 899960 900394 R KEGG: bja:blr0497 hypothetical protein; hypothetical protein complement(899960..900394) Rhodopseudomonas palustris TIE-1 6408504 YP_001989884.1 CDS Rpal_0851 NC_011004.1 900583 902400 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: nha:Nham_3276 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); diguanylate cyclase/phosphodiesterase complement(900583..902400) Rhodopseudomonas palustris TIE-1 6408505 YP_001989885.1 CDS Rpal_0852 NC_011004.1 902578 903420 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr0893 oxidoreductase; short-chain dehydrogenase/reductase SDR 902578..903420 Rhodopseudomonas palustris TIE-1 6408506 YP_001989886.1 CDS Rpal_0853 NC_011004.1 903545 904924 R PFAM: cytochrome P450; KEGG: bbt:BBta_7679 cytochrome P450 family protein; cytochrome P450 complement(903545..904924) Rhodopseudomonas palustris TIE-1 6408507 YP_001989887.1 CDS Rpal_0854 NC_011004.1 905045 906439 R PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bja:blr4264 adenylate cyclase protein; adenylate/guanylate cyclase complement(905045..906439) Rhodopseudomonas palustris TIE-1 6408508 YP_001989888.1 CDS Rpal_0855 NC_011004.1 906496 907470 D metalloprotease; heat shock protein HtpX 906496..907470 Rhodopseudomonas palustris TIE-1 6408509 YP_001989889.1 CDS Rpal_0856 NC_011004.1 907723 909138 D PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr0898 probable ATP-binding protein; major facilitator superfamily protein 907723..909138 Rhodopseudomonas palustris TIE-1 6408510 YP_001989890.1 CDS Rpal_0857 NC_011004.1 909135 910322 R PFAM: aminotransferase class V; KEGG: bra:BRADO6985 aminotransferase, class V; serine--glyoxylate aminotransferase; class V aminotransferase complement(909135..910322) Rhodopseudomonas palustris TIE-1 6408511 YP_001989891.1 CDS Rpal_0858 NC_011004.1 910378 911232 R KEGG: mlo:mlr2577 hypothetical protein; hypothetical protein complement(910378..911232) Rhodopseudomonas palustris TIE-1 6408512 YP_001989892.1 CDS Rpal_0859 NC_011004.1 911266 911997 R PFAM: nuclease (SNase domain protein); KEGG: bbt:BBta_0545 nuclease-like protein; nuclease complement(911266..911997) Rhodopseudomonas palustris TIE-1 6408513 YP_001989893.1 CDS Rpal_0860 NC_011004.1 912111 913850 R KEGG: nha:Nham_3607 hypothetical protein; hypothetical protein complement(912111..913850) Rhodopseudomonas palustris TIE-1 6408514 YP_001989894.1 CDS Rpal_0861 NC_011004.1 914305 915171 D PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: bja:bll0370 hypothetical protein; peptidase C14 caspase catalytic subunit p20 914305..915171 Rhodopseudomonas palustris TIE-1 6408515 YP_001989895.1 CDS Rpal_0862 NC_011004.1 915262 916020 R PFAM: carbonic anhydrase; KEGG: bbt:BBta_0791 carbonic anhydrase (carbonate dehydratase); carbonate dehydratase complement(915262..916020) Rhodopseudomonas palustris TIE-1 6408516 YP_001989896.1 CDS Rpal_0863 NC_011004.1 916107 916739 R PFAM: peptidase S24 and S26 domain protein; KEGG: nha:Nham_0557 phage repressor; phage repressor complement(916107..916739) Rhodopseudomonas palustris TIE-1 6408517 YP_001989897.1 CDS Rpal_0864 NC_011004.1 917070 917414 D PFAM: protein of unknown function DUF952; KEGG: nha:Nham_0556 protein of unknown function DUF952; hypothetical protein 917070..917414 Rhodopseudomonas palustris TIE-1 6408518 YP_001989898.1 CDS Rpal_0865 NC_011004.1 917411 918505 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 917411..918505 Rhodopseudomonas palustris TIE-1 6408519 YP_001989899.1 CDS Rpal_0866 NC_011004.1 918642 919376 R PFAM: beta-lactamase domain protein; KEGG: bja:bll1142 hypothetical protein; beta-lactamase domain-containing protein complement(918642..919376) Rhodopseudomonas palustris TIE-1 6408520 YP_001989900.1 CDS Rpal_0867 NC_011004.1 919520 920227 R PFAM: carbonic anhydrase; KEGG: azc:AZC_0918 carbonic anhydrase; carbonic anhydrase complement(919520..920227) Rhodopseudomonas palustris TIE-1 6408521 YP_001989901.1 CDS Rpal_0868 NC_011004.1 920365 921687 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bja:bll1141 DNA-damage-inducible protein F; MATE efflux family protein complement(920365..921687) Rhodopseudomonas palustris TIE-1 6408522 YP_001989902.1 CDS Rpal_0869 NC_011004.1 921706 922008 R KEGG: nwi:Nwi_0463 hypothetical protein; hypothetical protein complement(921706..922008) Rhodopseudomonas palustris TIE-1 6408523 YP_001989903.1 CDS Rpal_0870 NC_011004.1 922080 923948 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase complement(922080..923948) Rhodopseudomonas palustris TIE-1 6408524 YP_001989904.1 CDS Rpal_0871 NC_011004.1 923945 924991 R KEGG: bbt:BBta_0799 metallo-hydrolase/oxidoreductase; metallo-hydrolase/oxidoreductase complement(923945..924991) Rhodopseudomonas palustris TIE-1 6408525 YP_001989905.1 CDS Rpal_0872 NC_011004.1 925050 925985 D PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bja:blr1146 hypothetical protein; type 11 methyltransferase 925050..925985 Rhodopseudomonas palustris TIE-1 6408526 YP_001989906.1 CDS Rpal_0873 NC_011004.1 926137 927486 R PFAM: porin; KEGG: nha:Nham_0239 outer membrane protein; porin complement(926137..927486) Rhodopseudomonas palustris TIE-1 6408527 YP_001989907.1 CDS Rpal_0874 NC_011004.1 927830 929050 D KEGG: bbt:BBta_0801 amino-acid ABC transport system, periplasmic binding protein; amino-acid ABC transport system, periplasmic binding protein 927830..929050 Rhodopseudomonas palustris TIE-1 6408528 YP_001989908.1 CDS Rpal_0875 NC_011004.1 929226 931952 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: bbt:BBta_0802 ATP dependent DNA helicase; DEAD/DEAH box helicase 929226..931952 Rhodopseudomonas palustris TIE-1 6408529 YP_001989909.1 CDS Rpal_0876 NC_011004.1 932017 932739 D KEGG: nha:Nham_0241 metallophosphoesterase; metallophosphoesterase 932017..932739 Rhodopseudomonas palustris TIE-1 6408530 YP_001989910.1 CDS Rpal_0877 NC_011004.1 932884 933747 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll1150 transcriptional regulatory protein; LysR family transcriptional regulator complement(932884..933747) Rhodopseudomonas palustris TIE-1 6408531 YP_001989911.1 CDS Rpal_0878 NC_011004.1 933846 934766 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr1151 hypothetical protein; hypothetical protein 933846..934766 Rhodopseudomonas palustris TIE-1 6408532 YP_001989912.1 CDS Rpal_0879 NC_011004.1 934852 936198 D KEGG: bja:bll8038 manganese transport protein; manganese transport protein 934852..936198 Rhodopseudomonas palustris TIE-1 6408533 YP_001989913.1 CDS Rpal_0880 NC_011004.1 936363 937163 R PFAM: conserved hypothetical protein; KEGG: bbt:BBta_0806 exported protein of unknown function; hypothetical protein complement(936363..937163) Rhodopseudomonas palustris TIE-1 6408534 YP_001989914.1 CDS Rpal_0881 NC_011004.1 937160 938122 R PFAM: protein of unknown function DUF81; KEGG: bja:bll1154 hypothetical protein; hypothetical protein complement(937160..938122) Rhodopseudomonas palustris TIE-1 6408535 YP_001989915.1 CDS Rpal_0882 NC_011004.1 938359 941691 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: bja:bll1155 hypothetical protein; Sel1 domain-containing protein repeat-containing protein complement(938359..941691) Rhodopseudomonas palustris TIE-1 6408536 YP_001989916.1 CDS Rpal_0883 NC_011004.1 941945 942502 R PFAM: regulatory protein TetR; KEGG: bja:blr0601 transcriptional regulatory protein; TetR family transcriptional regulator complement(941945..942502) Rhodopseudomonas palustris TIE-1 6408537 YP_001989917.1 CDS Rpal_0884 NC_011004.1 942835 943221 D KEGG: bra:BRADO6726 hypothetical protein; hypothetical protein 942835..943221 Rhodopseudomonas palustris TIE-1 6408538 YP_001989918.1 CDS Rpal_0885 NC_011004.1 943315 945105 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bra:BRADO6725 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 943315..945105 Rhodopseudomonas palustris TIE-1 6408539 YP_001989919.1 CDS Rpal_0886 NC_011004.1 945276 946484 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 945276..946484 Rhodopseudomonas palustris TIE-1 6408540 YP_001989920.1 CDS Rpal_0887 NC_011004.1 946609 948825 D PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bbt:BBta_0817 anaerobic fatty acid oxidation complex protein; 3-hydroxyacyl-CoA dehydrogenase 946609..948825 Rhodopseudomonas palustris TIE-1 6408541 YP_001989921.1 CDS Rpal_0888 NC_011004.1 949277 949891 R PFAM: glutathione S-transferase domain; KEGG: bja:bll1162 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(949277..949891) Rhodopseudomonas palustris TIE-1 6408542 YP_001989922.1 CDS Rpal_0889 NC_011004.1 950013 950504 D PFAM: regulatory protein MarR; KEGG: bra:BRADO6719 transcriptional regulator, MarR family; MarR family transcriptional regulator 950013..950504 Rhodopseudomonas palustris TIE-1 6408543 YP_001989923.1 CDS Rpal_0890 NC_011004.1 950598 951968 D KEGG: bja:blr1164 glutathione synthetase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GCS2; glutamate/cysteine ligase 950598..951968 Rhodopseudomonas palustris TIE-1 6408544 YP_001989924.1 CDS Rpal_0891 NC_011004.1 952114 952665 D SMART: Apple; KEGG: bja:blr1165 hypothetical protein; hypothetical protein 952114..952665 Rhodopseudomonas palustris TIE-1 6408545 YP_001989925.1 CDS Rpal_0892 NC_011004.1 952699 953469 R KEGG: nha:Nham_0252 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I complement(952699..953469) Rhodopseudomonas palustris TIE-1 6408546 YP_001989926.1 CDS Rpal_0893 NC_011004.1 953466 954893 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: bbt:BBta_0825 peptidase TldD; peptidase U62 modulator of DNA gyrase complement(953466..954893) Rhodopseudomonas palustris TIE-1 6408547 YP_001989927.1 CDS Rpal_0894 NC_011004.1 955015 955236 D PFAM: protein of unknown function DUF433; KEGG: ana:asr2958 hypothetical protein; hypothetical protein 955015..955236 Rhodopseudomonas palustris TIE-1 6408548 YP_001989928.1 CDS Rpal_0895 NC_011004.1 955236 955565 D KEGG: rca:Rcas_0081 hypothetical protein; hypothetical protein 955236..955565 Rhodopseudomonas palustris TIE-1 6408549 YP_001989929.1 CDS Rpal_0896 NC_011004.1 955648 956118 D PFAM: regulatory protein MarR; Penicillinase repressor; KEGG: rso:RS02614 transcription regulator protein; MarR family transcriptional regulator 955648..956118 Rhodopseudomonas palustris TIE-1 6408550 YP_001989930.1 CDS Rpal_0897 NC_011004.1 956233 956658 D PFAM: OsmC family protein; KEGG: pmy:Pmen_2630 OsmC family protein; OsmC family protein 956233..956658 Rhodopseudomonas palustris TIE-1 6408551 YP_001989931.1 CDS Rpal_0898 NC_011004.1 956891 957439 R PFAM: Invasion associated locus B family protein; KEGG: nwi:Nwi_0222 invasion associated locus B; invasion associated locus B family protein complement(956891..957439) Rhodopseudomonas palustris TIE-1 6408552 YP_001989932.1 CDS Rpal_0899 NC_011004.1 957848 958705 D KEGG: bbt:BBta_0828 cytochrome C oxidase, subunit II; TIGRFAM: cytochrome C oxidase, subunit II; PFAM: cytochrome C oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; cytochrome C oxidase subunit II 957848..958705 Rhodopseudomonas palustris TIE-1 6408553 YP_001989933.1 CDS Rpal_0900 NC_011004.1 958773 960398 D KEGG: bra:BRADO6706 cytochrome C oxidase, subunit I; TIGRFAM: cytochrome C oxidase, subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome C oxidase subunit I 958773..960398 Rhodopseudomonas palustris TIE-1 6408554 YP_001989934.1 CDS Rpal_0901 NC_011004.1 960471 961409 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 960471..961409 Rhodopseudomonas palustris TIE-1 6408555 YP_001989935.1 CDS Rpal_0902 NC_011004.1 961421 961588 D KEGG: bja:bsr1173 CoxF protein; CoxF protein 961421..961588 Rhodopseudomonas palustris TIE-1 6408556 YP_001989936.1 CDS Rpal_0903 NC_011004.1 961603 962229 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 961603..962229 Rhodopseudomonas palustris TIE-1 6408557 YP_001989937.1 CDS Rpal_0904 NC_011004.1 962301 963155 D PFAM: cytochrome C oxidase subunit III; KEGG: bbt:BBta_0833 cytochrome C oxidase, subunit III; cytochrome C oxidase subunit III 962301..963155 Rhodopseudomonas palustris TIE-1 6408558 YP_001989938.1 CDS Rpal_0905 NC_011004.1 963318 963713 D PFAM: protein of unknown function DUF983; KEGG: bja:blr1176 hypothetical protein; hypothetical protein 963318..963713 Rhodopseudomonas palustris TIE-1 6408559 YP_001989939.1 CDS Rpal_0906 NC_011004.1 963710 964513 D PFAM: Surfeit locus 1 family protein; KEGG: bja:blr1177 SUR1-like protein; surfeit locus 1 family protein 963710..964513 Rhodopseudomonas palustris TIE-1 6408560 YP_001989940.1 CDS Rpal_0907 NC_011004.1 964660 966078 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 964660..966078 Rhodopseudomonas palustris TIE-1 6408561 YP_001989941.1 CDS Rpal_0908 NC_011004.1 966075 967364 D PFAM: peptidase M16 domain protein; KEGG: bja:blr1182 mitochondrial processing peptidase-like protein; peptidase M16 domain-containing protein 966075..967364 Rhodopseudomonas palustris TIE-1 6408562 YP_001989942.1 CDS Rpal_0909 NC_011004.1 967426 968013 D PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr1183 ribosomal-protein-alanine N-acetyltransferase; N-acetyltransferase GCN5 967426..968013 Rhodopseudomonas palustris TIE-1 6408563 YP_001989943.1 CDS Rpal_0910 NC_011004.1 968132 968764 D KEGG: bja:blr1184 hypothetical protein; hypothetical protein 968132..968764 Rhodopseudomonas palustris TIE-1 6408564 YP_001989944.1 CDS Rpal_0911 NC_011004.1 968895 969386 R PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: nha:Nham_0266 H+-transporting two-sector ATPase, B/B' subunit; H+transporting two-sector ATPase subunit B/B' complement(968895..969386) Rhodopseudomonas palustris TIE-1 6408565 YP_001989945.1 CDS Rpal_0912 NC_011004.1 969392 969949 R PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: nwi:Nwi_0236 H+-transporting two-sector ATPase, B/B' subunit; H+transporting two-sector ATPase subunit B/B' complement(969392..969949) Rhodopseudomonas palustris TIE-1 6408566 YP_001989946.1 CDS Rpal_0913 NC_011004.1 970007 970234 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(970007..970234) Rhodopseudomonas palustris TIE-1 6408567 YP_001989947.1 CDS Rpal_0914 NC_011004.1 970283 971029 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(970283..971029) Rhodopseudomonas palustris TIE-1 6408568 YP_001989948.1 CDS Rpal_0915 NC_011004.1 971099 971485 R KEGG: nha:Nham_0270 FoF1 ATP synthase, subunit I; FoF1 ATP synthase subunit I complement(971099..971485) Rhodopseudomonas palustris TIE-1 6408569 YP_001989949.1 CDS Rpal_0916 NC_011004.1 971788 972411 D PFAM: DSBA oxidoreductase; KEGG: bbt:BBta_0848 hypothetical protein; DSBA oxidoreductase 971788..972411 Rhodopseudomonas palustris TIE-1 6408570 YP_001989950.1 CDS Rpal_0917 NC_011004.1 972457 973041 D KEGG: bja:blr1191 hypothetical protein; hypothetical protein 972457..973041 Rhodopseudomonas palustris TIE-1 6408571 YP_001989951.1 CDS Rpal_0918 NC_011004.1 973065 973538 D PFAM: protein of unknown function UPF0047; KEGG: bja:blr1192 hypothetical protein; hypothetical protein 973065..973538 Rhodopseudomonas palustris TIE-1 6408572 YP_001989952.1 CDS Rpal_0919 NC_011004.1 973736 975400 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bbt:BBta_0851 sugar transporter MFS family; general substrate transporter complement(973736..975400) Rhodopseudomonas palustris TIE-1 6408573 YP_001989953.1 CDS Rpal_0920 NC_011004.1 975737 976414 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bja:blr1194 two-component response regulator; LuxR family transcriptional regulator 975737..976414 Rhodopseudomonas palustris TIE-1 6408574 YP_001989954.1 CDS Rpal_0921 NC_011004.1 976576 980085 R PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bbt:BBta_0860 two-component hybrid sensor histidine kinase and response regulator; integral membrane sensor hybrid histidine kinase complement(976576..980085) Rhodopseudomonas palustris TIE-1 6408575 YP_001989955.1 CDS Rpal_0922 NC_011004.1 980273 981502 R catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase complement(980273..981502) Rhodopseudomonas palustris TIE-1 6408576 YP_001989956.1 CDS Rpal_0923 NC_011004.1 981723 982787 R PFAM: beta-lactamase domain protein; KEGG: bja:bll1202 hypothetical protein; beta-lactamase domain-containing protein complement(981723..982787) Rhodopseudomonas palustris TIE-1 6408577 YP_001989957.1 CDS Rpal_0924 NC_011004.1 982953 985091 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:bll1203 probable methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(982953..985091) Rhodopseudomonas palustris TIE-1 6408578 YP_001989958.1 CDS Rpal_0925 NC_011004.1 985307 986038 R PFAM: porin; KEGG: bra:BRADO6669 conserved hypothetical protein; outer-membrane immunogenic protein precursor; secreted protein; porin complement(985307..986038) Rhodopseudomonas palustris TIE-1 6408579 YP_001989959.1 CDS Rpal_0926 NC_011004.1 986608 987357 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_3428 ABC transporter; ABC transporter 986608..987357 Rhodopseudomonas palustris TIE-1 6408580 YP_001989960.1 CDS Rpal_0927 NC_011004.1 987362 988234 D PFAM: ABC transporter; KEGG: nha:Nham_3427 ABC-3; ABC transporter 987362..988234 Rhodopseudomonas palustris TIE-1 6408581 YP_001989961.1 CDS Rpal_0928 NC_011004.1 988240 989157 D PFAM: periplasmic solute binding protein; KEGG: nha:Nham_3426 periplasmic solute binding protein; periplasmic solute binding protein 988240..989157 Rhodopseudomonas palustris TIE-1 6408582 YP_001989962.1 CDS Rpal_0929 NC_011004.1 989304 990353 D PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bbt:BBta_1342 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein P47K 989304..990353 Rhodopseudomonas palustris TIE-1 6408583 YP_001989963.1 CDS Rpal_0930 NC_011004.1 990350 991369 D SMART: hypothetical protein; KEGG: bja:bll7767 hypothetical protein; hypothetical protein 990350..991369 Rhodopseudomonas palustris TIE-1 6408584 YP_001989964.1 CDS Rpal_0931 NC_011004.1 991404 992126 D PFAM: MgtC/SapB transporter; KEGG: bja:bll7766 hypothetical protein; MgtC/SapB transporter 991404..992126 Rhodopseudomonas palustris TIE-1 6408585 YP_001989965.1 CDS Rpal_0932 NC_011004.1 992187 992585 D KEGG: bra:BRADO6265 conserved hypothetical protein; signal peptide; hypothetical protein 992187..992585 Rhodopseudomonas palustris TIE-1 6408586 YP_001989966.1 CDS Rpal_0933 NC_011004.1 992855 994285 R PFAM: homospermidine synthase; KEGG: nwi:Nwi_0921 homospermidine synthase; homospermidine synthase complement(992855..994285) Rhodopseudomonas palustris TIE-1 6408587 YP_001989967.1 CDS Rpal_0934 NC_011004.1 994395 994799 R PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: nha:Nham_3421 GreA/GreB family elongation factor; GreA/GreB family elongation factor complement(994395..994799) Rhodopseudomonas palustris TIE-1 6408588 YP_001989968.1 CDS Rpal_0935 NC_011004.1 995094 995480 R PFAM: Endoribonuclease L-PSP; KEGG: bja:blr7761 hypothetical protein; endoribonuclease L-PSP complement(995094..995480) Rhodopseudomonas palustris TIE-1 6408589 YP_001989969.1 CDS Rpal_0936 NC_011004.1 995578 995736 R hypothetical protein complement(995578..995736) Rhodopseudomonas palustris TIE-1 6408590 YP_001989970.1 CDS Rpal_0937 NC_011004.1 995747 996334 R PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr7760 hypothetical protein; N-acetyltransferase GCN5 complement(995747..996334) Rhodopseudomonas palustris TIE-1 6408591 YP_001989971.1 CDS Rpal_0938 NC_011004.1 996477 997619 R PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bja:blr7759 ornithine decarboxylase; ornithine decarboxylase complement(996477..997619) Rhodopseudomonas palustris TIE-1 6408592 YP_001989972.1 CDS Rpal_0939 NC_011004.1 998283 998543 R KEGG: bbt:BBta_1350 exported protein of unknown function; hypothetical protein complement(998283..998543) Rhodopseudomonas palustris TIE-1 6408593 YP_001989973.1 CDS Rpal_0940 NC_011004.1 998752 1000842 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: bja:bll7756 peptidyl-dipeptidase; peptidyl-dipeptidase Dcp 998752..1000842 Rhodopseudomonas palustris TIE-1 6408594 YP_001989974.1 CDS Rpal_0941 NC_011004.1 1000847 1001500 D PFAM: protein of unknown function DUF1007; KEGG: bja:bll7755 hypothetical protein; hypothetical protein 1000847..1001500 Rhodopseudomonas palustris TIE-1 6408595 YP_001989975.1 CDS Rpal_0942 NC_011004.1 1001656 1002810 D PFAM: high-affinity nickel-transporter; KEGG: bja:bll7754 hypothetical protein; high-affinity nickel-transporter 1001656..1002810 Rhodopseudomonas palustris TIE-1 6408596 YP_001989976.1 CDS hemH NC_011004.1 1002986 1004023 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1002986..1004023 Rhodopseudomonas palustris TIE-1 6408597 YP_001989977.1 CDS Rpal_0944 NC_011004.1 1004180 1005175 D PFAM: band 7 protein; KEGG: bja:bll7750 hypothetical protein; hypothetical protein 1004180..1005175 Rhodopseudomonas palustris TIE-1 6408598 YP_001989978.1 CDS Rpal_0945 NC_011004.1 1005192 1005641 D PFAM: protein of unknown function DUF107; KEGG: bbt:BBta_1360 membrane protein of unknown function; hypothetical protein 1005192..1005641 Rhodopseudomonas palustris TIE-1 6408599 YP_001989979.1 CDS Rpal_0946 NC_011004.1 1005745 1006605 R PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: rle:RL2634 AraC family transcriptional regulator; AraC family transcriptional regulator complement(1005745..1006605) Rhodopseudomonas palustris TIE-1 6408600 YP_001989980.1 CDS Rpal_0947 NC_011004.1 1006955 1007968 R KEGG: nha:Nham_3413 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein complement(1006955..1007968) Rhodopseudomonas palustris TIE-1 6408601 YP_001989981.1 CDS Rpal_0948 NC_011004.1 1008173 1009888 D KEGG: bja:bll7745 hypothetical protein; hypothetical protein 1008173..1009888 Rhodopseudomonas palustris TIE-1 6408602 YP_001989982.1 CDS Rpal_0949 NC_011004.1 1010001 1011017 D KEGG: bbt:BBta_4227 membrane protein of unknown function; hypothetical protein 1010001..1011017 Rhodopseudomonas palustris TIE-1 6408603 YP_001989983.1 CDS Rpal_0950 NC_011004.1 1011007 1011858 R PFAM: ABC transporter inner membrane protein; KEGG: bxe:Bxe_B0493 ABC nitrate/sulfonate/bicarbonate family transporter inner membrane subunit; ABC transporter inner membrane protein complement(1011007..1011858) Rhodopseudomonas palustris TIE-1 6408604 YP_001989984.1 CDS Rpal_0951 NC_011004.1 1011968 1012762 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rfr:Rfer_3115 ABC transporter; ABC transporter complement(1011968..1012762) Rhodopseudomonas palustris TIE-1 6408605 YP_001989985.1 CDS Rpal_0952 NC_011004.1 1013011 1014009 R KEGG: xau:Xaut_1529 substrate-binding component of ABC transporter; ABC transporter substrate-binding protein complement(1013011..1014009) Rhodopseudomonas palustris TIE-1 6408606 YP_001989986.1 CDS Rpal_0953 NC_011004.1 1014137 1014409 R KEGG: bra:BRADO1091 hypothetical protein; hypothetical protein complement(1014137..1014409) Rhodopseudomonas palustris TIE-1 6408607 YP_001989987.1 CDS Rpal_0954 NC_011004.1 1014577 1016085 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bja:bll1500 hypothetical protein; diguanylate cyclase 1014577..1016085 Rhodopseudomonas palustris TIE-1 6408608 YP_001989988.1 CDS Rpal_0955 NC_011004.1 1016116 1016991 R KEGG: bbt:BBta_6959 glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase complement(1016116..1016991) Rhodopseudomonas palustris TIE-1 6408609 YP_001989989.1 CDS Rpal_0956 NC_011004.1 1017115 1018059 R PFAM: alpha/beta hydrolase fold; KEGG: bja:bll7739 lysophospholipase; alpha/beta hydrolase fold protein complement(1017115..1018059) Rhodopseudomonas palustris TIE-1 6408610 YP_001989990.1 CDS Rpal_0957 NC_011004.1 1018280 1018756 D PFAM: heat shock protein Hsp20; KEGG: nwi:Nwi_2952 heat shock protein HSP20; heat shock protein Hsp20 1018280..1018756 Rhodopseudomonas palustris TIE-1 6408611 YP_001989991.1 CDS Rpal_0958 NC_011004.1 1018898 1019674 R KEGG: bja:bll7742 hypothetical protein; hypothetical protein complement(1018898..1019674) Rhodopseudomonas palustris TIE-1 6408612 YP_001989992.1 CDS Rpal_0959 NC_011004.1 1020134 1024861 D PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: nha:Nham_1138 glutamate synthase (ferredoxin); glutamate synthase 1020134..1024861 Rhodopseudomonas palustris TIE-1 6408613 YP_001989993.1 CDS gltD NC_011004.1 1025034 1026488 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 1025034..1026488 Rhodopseudomonas palustris TIE-1 6408614 YP_001989994.1 CDS Rpal_0961 NC_011004.1 1026846 1027250 D PFAM: protein of unknown function DUF559; KEGG: cak:Caul_1522 protein of unknown function DUF559; hypothetical protein 1026846..1027250 Rhodopseudomonas palustris TIE-1 6408615 YP_001989995.1 CDS Rpal_0962 NC_011004.1 1027700 1029184 R KEGG: cph:Cpha266_0459 hypothetical protein; hypothetical protein complement(1027700..1029184) Rhodopseudomonas palustris TIE-1 6408616 YP_001989996.1 CDS Rpal_0963 NC_011004.1 1030224 1031000 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_6964 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR complement(1030224..1031000) Rhodopseudomonas palustris TIE-1 6408617 YP_001989997.1 CDS Rpal_0964 NC_011004.1 1031140 1031874 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bja:blr1495 oxidoreductase; short-chain dehydrogenase/reductase SDR 1031140..1031874 Rhodopseudomonas palustris TIE-1 6408618 YP_001989998.1 CDS Rpal_0965 NC_011004.1 1031946 1033631 R PFAM: protein of unknown function DUF459; KEGG: bja:bll1497 hypothetical protein; hypothetical protein complement(1031946..1033631) Rhodopseudomonas palustris TIE-1 6408619 YP_001989999.1 CDS Rpal_0966 NC_011004.1 1033778 1034695 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(1033778..1034695) Rhodopseudomonas palustris TIE-1 6408620 YP_001990000.1 CDS Rpal_0967 NC_011004.1 1034963 1035106 R hypothetical protein complement(1034963..1035106) Rhodopseudomonas palustris TIE-1 6408621 YP_001990001.1 CDS Rpal_0968 NC_011004.1 1035230 1036615 R TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: bra:BRADO1088 membrane-bound lytic murein transglycosylase, signal peptide; lytic murein transglycosylase complement(1035230..1036615) Rhodopseudomonas palustris TIE-1 6408622 YP_001990002.1 CDS Rpal_0969 NC_011004.1 1036790 1037446 D PFAM: lysine exporter; KEGG: bja:bll7736 efflux protein; lysine exporter 1036790..1037446 Rhodopseudomonas palustris TIE-1 6408623 YP_001990003.1 CDS Rpal_0970 NC_011004.1 1037463 1038215 R PFAM: protein of unknown function DUF81; KEGG: bja:blr7734 hypothetical protein; hypothetical protein complement(1037463..1038215) Rhodopseudomonas palustris TIE-1 6408624 YP_001990004.1 CDS Rpal_0972 NC_011004.1 1038757 1039341 D PFAM: regulatory protein TetR; KEGG: mlo:mlr2419 probable transcriptional regulator; TetR family transcriptional regulator 1038757..1039341 Rhodopseudomonas palustris TIE-1 6408626 YP_001990005.1 CDS Rpal_0973 NC_011004.1 1039357 1040139 R TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: bja:blr7731 inositol monophosphatase family protein; histidinol-phosphate phosphatase complement(1039357..1040139) Rhodopseudomonas palustris TIE-1 6408627 YP_001990006.1 CDS Rpal_0974 NC_011004.1 1040838 1041008 R PFAM: Flp/Fap pilin component; KEGG: bra:BRADO5701 Flp/Fap pilin component; Flp/Fap pilin component complement(1040838..1041008) Rhodopseudomonas palustris TIE-1 6408628 YP_001990007.1 CDS Rpal_0975 NC_011004.1 1041159 1042046 R PFAM: N-formylglutamate amidohydrolase; KEGG: bja:blr7730 hypothetical protein; N-formylglutamate amidohydrolase complement(1041159..1042046) Rhodopseudomonas palustris TIE-1 6408629 YP_001990008.1 CDS Rpal_0976 NC_011004.1 1042357 1042716 D PFAM: response regulator receiver; KEGG: nha:Nham_1143 response regulator receiver domain protein (CheY-like); response regulator receiver protein 1042357..1042716 Rhodopseudomonas palustris TIE-1 6408630 YP_001990009.1 CDS Rpal_0977 NC_011004.1 1043108 1043233 D KEGG: atc:AGR_pAT_739 hypothetical protein; hypothetical protein 1043108..1043233 Rhodopseudomonas palustris TIE-1 6408632 YP_001990010.1 CDS Rpal_0978 NC_011004.1 1043378 1043527 R KEGG: bbt:BBta_1649 hypothetical protein; hypothetical protein complement(1043378..1043527) Rhodopseudomonas palustris TIE-1 6408633 YP_001990011.1 CDS Rpal_0979 NC_011004.1 1043682 1044281 R stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA complement(1043682..1044281) Rhodopseudomonas palustris TIE-1 6408634 YP_001990012.1 CDS Rpal_0980 NC_011004.1 1044447 1045145 R PFAM: pirin; KEGG: bbt:BBta_1651 pirin family protein; pirin complement(1044447..1045145) Rhodopseudomonas palustris TIE-1 6408635 YP_001990013.1 CDS Rpal_0981 NC_011004.1 1045278 1046201 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll7565 transcriptional regulatory protein; LysR family transcriptional regulator 1045278..1046201 Rhodopseudomonas palustris TIE-1 6408636 YP_001990014.1 CDS Rpal_0982 NC_011004.1 1046216 1047049 R KEGG: bja:bll1491 hypothetical protein; hypothetical protein complement(1046216..1047049) Rhodopseudomonas palustris TIE-1 6408637 YP_001990015.1 CDS Rpal_0983 NC_011004.1 1047184 1047837 D PFAM: protein of unknown function DUF179; KEGG: nha:Nham_3550 hypothetical protein; hypothetical protein 1047184..1047837 Rhodopseudomonas palustris TIE-1 6408638 YP_001990016.1 CDS Rpal_0984 NC_011004.1 1048059 1050938 R KEGG: bja:bll1502 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1048059..1050938) Rhodopseudomonas palustris TIE-1 6408639 YP_001990017.1 CDS Rpal_0985 NC_011004.1 1051061 1052059 R TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bra:BRADO1103 NADPH quinone oxidoreductase; NAD(P)H quinone oxidoreductase complement(1051061..1052059) Rhodopseudomonas palustris TIE-1 6408640 YP_001990018.1 CDS Rpal_0986 NC_011004.1 1052173 1052364 D PFAM: protein of unknown function DUF1192; KEGG: bja:bsr1504 hypothetical protein; hypothetical protein 1052173..1052364 Rhodopseudomonas palustris TIE-1 6408641 YP_001990019.1 CDS Rpal_0987 NC_011004.1 1052785 1053294 D PFAM: protein of unknown function DUF1465; KEGG: bbt:BBta_6944 hypothetical protein; hypothetical protein 1052785..1053294 Rhodopseudomonas palustris TIE-1 6408642 YP_001990020.1 CDS rpmE NC_011004.1 1053516 1053743 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(1053516..1053743) Rhodopseudomonas palustris TIE-1 6408643 YP_001990021.1 CDS Rpal_0989 NC_011004.1 1053941 1055845 D KEGG: nwi:Nwi_2746 ABC transporter ATP-binding/permease protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter; SMART: ATPase AAA; lipid A ABC exporter family, fused ATPase and inner membrane subunits 1053941..1055845 Rhodopseudomonas palustris TIE-1 6408644 YP_001990022.1 CDS Rpal_0990 NC_011004.1 1055989 1056435 R PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_3543 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1055989..1056435) Rhodopseudomonas palustris TIE-1 6408645 YP_001990023.1 CDS Rpal_0991 NC_011004.1 1056572 1057597 R PFAM: OmpA/MotB domain protein; KEGG: bja:bll1510 hypothetical protein; hypothetical protein complement(1056572..1057597) Rhodopseudomonas palustris TIE-1 6408646 YP_001990024.1 CDS Rpal_0992 NC_011004.1 1057597 1058616 R KEGG: nha:Nham_3541 hypothetical protein; hypothetical protein complement(1057597..1058616) Rhodopseudomonas palustris TIE-1 6408647 YP_001990025.1 CDS Rpal_0993 NC_011004.1 1058796 1059623 D PFAM: protein of unknown function DUF1295; KEGG: bbt:BBta_6937 membrane protein of unknown function; hypothetical protein 1058796..1059623 Rhodopseudomonas palustris TIE-1 6408648 YP_001990026.1 CDS Rpal_0994 NC_011004.1 1059620 1060645 D PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: bra:BRADO1113 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1059620..1060645 Rhodopseudomonas palustris TIE-1 6408649 YP_001990027.1 CDS Rpal_0995 NC_011004.1 1060928 1061122 D hypothetical protein 1060928..1061122 Rhodopseudomonas palustris TIE-1 6408650 YP_001990028.1 CDS Rpal_0996 NC_011004.1 1061207 1061401 D hypothetical protein 1061207..1061401 Rhodopseudomonas palustris TIE-1 6408651 YP_001990029.1 CDS Rpal_0997 NC_011004.1 1061499 1061708 R SMART: helix-turn-helix domain protein; KEGG: xau:Xaut_0314 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1061499..1061708) Rhodopseudomonas palustris TIE-1 6408652 YP_001990030.1 CDS Rpal_0998 NC_011004.1 1061712 1062287 R KEGG: xau:Xaut_0315 hypothetical protein; hypothetical protein complement(1061712..1062287) Rhodopseudomonas palustris TIE-1 6408653 YP_001990031.1 CDS Rpal_0999 NC_011004.1 1062366 1062944 D KEGG: xau:Xaut_0316 hypothetical protein; hypothetical protein 1062366..1062944 Rhodopseudomonas palustris TIE-1 6408654 YP_001990032.1 CDS Rpal_1000 NC_011004.1 1063168 1063770 R TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: bja:blr7630 probable decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(1063168..1063770) Rhodopseudomonas palustris TIE-1 6408655 YP_001990033.1 CDS Rpal_1001 NC_011004.1 1063767 1065305 R TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein; KEGG: bja:blr7629 hypothetical protein; UbiD family decarboxylase complement(1063767..1065305) Rhodopseudomonas palustris TIE-1 6408656 YP_001990034.1 CDS Rpal_1002 NC_011004.1 1065421 1065966 D KEGG: bja:bll7628 hypothetical protein; hypothetical protein 1065421..1065966 Rhodopseudomonas palustris TIE-1 6408657 YP_001990035.1 CDS Rpal_1003 NC_011004.1 1065970 1066947 D PFAM: peptidase U32; KEGG: bja:bll7627 hypothetical protein; peptidase U32 1065970..1066947 Rhodopseudomonas palustris TIE-1 6408658 YP_001990036.1 CDS Rpal_1004 NC_011004.1 1067016 1067936 D PFAM: peptidase U32; KEGG: bja:bll7626 hypothetical protein; peptidase U32 1067016..1067936 Rhodopseudomonas palustris TIE-1 6408659 YP_001990037.1 CDS Rpal_1005 NC_011004.1 1068350 1069654 R KEGG: mem:Memar_2113 dipeptidyl aminopeptidase/acylaminoacyl-peptidase related protein; dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein complement(1068350..1069654) Rhodopseudomonas palustris TIE-1 6408660 YP_001990038.1 CDS Rpal_1006 NC_011004.1 1069736 1070308 D PFAM: regulatory protein TetR; KEGG: fre:Franean1_6626 transcriptional regulator, TetR family; TetR family transcriptional regulator 1069736..1070308 Rhodopseudomonas palustris TIE-1 6408661 YP_001990039.1 CDS Rpal_1007 NC_011004.1 1070337 1071125 R PFAM: inositol monophosphatase; KEGG: bbt:BBta_6932 inositol monophosphatase; inositol-phosphate phosphatase complement(1070337..1071125) Rhodopseudomonas palustris TIE-1 6408662 YP_001990040.1 CDS Rpal_1008 NC_011004.1 1071230 1072321 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: bra:BRADO1118 beta-lactamase; Sel1 domain-containing protein repeat-containing protein complement(1071230..1072321) Rhodopseudomonas palustris TIE-1 6408663 YP_001990041.1 CDS Rpal_1009 NC_011004.1 1072338 1072997 R PFAM: thiamine monophosphate synthase; KEGG: nha:Nham_3535 thiamine monophosphate synthase; thiamine monophosphate synthase complement(1072338..1072997) Rhodopseudomonas palustris TIE-1 6408664 YP_001990042.1 CDS Rpal_1010 NC_011004.1 1073003 1074037 R PFAM: fructose-bisphosphate aldolase class-I; KEGG: nha:Nham_3534 fructose-bisphosphate aldolase; fructose-bisphosphate aldolase complement(1073003..1074037) Rhodopseudomonas palustris TIE-1 6408665 YP_001990043.1 CDS Rpal_1011 NC_011004.1 1074092 1074415 R PFAM: PemK family protein; KEGG: psp:PSPPH_A0142 hypothetical protein; MazE family transcriptional regulator complement(1074092..1074415) Rhodopseudomonas palustris TIE-1 6408666 YP_001990044.1 CDS Rpal_1012 NC_011004.1 1074412 1074696 R KEGG: xcv:XCVc0003 hypothetical protein; hypothetical protein complement(1074412..1074696) Rhodopseudomonas palustris TIE-1 6408667 YP_001990045.1 CDS pgk NC_011004.1 1074795 1075991 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(1074795..1075991) Rhodopseudomonas palustris TIE-1 6408668 YP_001990046.1 CDS Rpal_1014 NC_011004.1 1076213 1077220 R KEGG: bra:BRADO1124 glyceraldehyde-3-phosphate dehydrogenase (GAPDH); TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(1076213..1077220) Rhodopseudomonas palustris TIE-1 6408669 YP_001990047.1 CDS Rpal_1015 NC_011004.1 1077436 1079421 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(1077436..1079421) Rhodopseudomonas palustris TIE-1 6408670 YP_001990048.1 CDS Rpal_1016 NC_011004.1 1079749 1080093 D KEGG: nha:Nham_3530 hypothetical protein; hypothetical protein 1079749..1080093 Rhodopseudomonas palustris TIE-1 6408671 YP_001990049.1 CDS Rpal_1017 NC_011004.1 1080090 1080500 D PFAM: protein of unknown function DUF710; KEGG: bra:BRADO1128 hypothetical protein; hypothetical protein 1080090..1080500 Rhodopseudomonas palustris TIE-1 6408672 YP_001990050.1 CDS Rpal_1018 NC_011004.1 1080635 1081876 R PFAM: (uracil-5)-methyltransferase; KEGG: bra:BRADO2158 RNA methyltransferase; (uracil-5)-methyltransferase complement(1080635..1081876) Rhodopseudomonas palustris TIE-1 6408673 YP_001990051.1 CDS Rpal_1019 NC_011004.1 1081923 1083347 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bja:bll0821 multidrug efflux protein; MATE efflux family protein complement(1081923..1083347) Rhodopseudomonas palustris TIE-1 6408674 YP_001990052.1 CDS Rpal_1020 NC_011004.1 1083410 1084150 R TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: nha:Nham_0777 hemolysin A; hemolysin A complement(1083410..1084150) Rhodopseudomonas palustris TIE-1 6408675 YP_001990053.1 CDS Rpal_1021 NC_011004.1 1084153 1084716 R PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: bbt:BBta_2478 nucleoside 2-deoxyribosyltransferase; nucleoside 2-deoxyribosyltransferase complement(1084153..1084716) Rhodopseudomonas palustris TIE-1 6408676 YP_001990054.1 CDS Rpal_1022 NC_011004.1 1084939 1086864 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(1084939..1086864) Rhodopseudomonas palustris TIE-1 6408677 YP_001990055.1 CDS Rpal_1023 NC_011004.1 1087279 1087530 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1087279..1087530) Rhodopseudomonas palustris TIE-1 6408678 YP_001990056.1 CDS Rpal_1024 NC_011004.1 1087613 1088542 R PFAM: histone deacetylase superfamily; KEGG: bja:bll2653 hypothetical protein; histone deacetylase superfamily protein complement(1087613..1088542) Rhodopseudomonas palustris TIE-1 6408679 YP_001990057.1 CDS Rpal_1025 NC_011004.1 1088648 1090330 R PFAM: metallophosphoesterase; 5'-nucleotidase; KEGG: bja:bll2654 5'-nucleotidase family protein; 5'-nucleotidase complement(1088648..1090330) Rhodopseudomonas palustris TIE-1 6408680 YP_001990058.1 CDS Rpal_1026 NC_011004.1 1090550 1091026 D KEGG: bra:BRADO3396 conserved hypothetical protein; signal peptide; hypothetical protein 1090550..1091026 Rhodopseudomonas palustris TIE-1 6408681 YP_001990059.1 CDS Rpal_1027 NC_011004.1 1091065 1091859 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bra:BRADO2169 enoyl-CoA hydratase; Enoyl-CoA hydratase/isomerase complement(1091065..1091859) Rhodopseudomonas palustris TIE-1 6408682 YP_001990060.1 CDS Rpal_1028 NC_011004.1 1092033 1093814 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_2498 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(1092033..1093814) Rhodopseudomonas palustris TIE-1 6408683 YP_001990061.1 CDS Rpal_1029 NC_011004.1 1094206 1096179 D PFAM: integrase family protein; KEGG: nha:Nham_0896 hypothetical protein; integrase family protein 1094206..1096179 Rhodopseudomonas palustris TIE-1 6408685 YP_001990062.1 CDS Rpal_1030 NC_011004.1 1096397 1097671 D PFAM: integrase family protein; KEGG: ret:RHE_CH00241 recombinase protein, phage integrase family; integrase family protein 1096397..1097671 Rhodopseudomonas palustris TIE-1 6408686 YP_001990063.1 CDS Rpal_1031 NC_011004.1 1097689 1098066 D hypothetical protein 1097689..1098066 Rhodopseudomonas palustris TIE-1 6408687 YP_001990064.1 CDS Rpal_1032 NC_011004.1 1098059 1098727 D hypothetical protein 1098059..1098727 Rhodopseudomonas palustris TIE-1 6408688 YP_001990065.1 CDS Rpal_1033 NC_011004.1 1098751 1099458 D hypothetical protein 1098751..1099458 Rhodopseudomonas palustris TIE-1 6408689 YP_001990066.1 CDS Rpal_1034 NC_011004.1 1099505 1100218 D hypothetical protein 1099505..1100218 Rhodopseudomonas palustris TIE-1 6408690 YP_001990067.1 CDS Rpal_1035 NC_011004.1 1100215 1101009 D KEGG: net:Neut_2625 hypothetical protein; hypothetical protein 1100215..1101009 Rhodopseudomonas palustris TIE-1 6408691 YP_001990068.1 CDS Rpal_1036 NC_011004.1 1101009 1101302 D hypothetical protein 1101009..1101302 Rhodopseudomonas palustris TIE-1 6408692 YP_001990069.1 CDS Rpal_1037 NC_011004.1 1101523 1102431 D KEGG: bra:BRADO6401 hypothetical protein; hypothetical protein 1101523..1102431 Rhodopseudomonas palustris TIE-1 6408693 YP_001990070.1 CDS Rpal_1038 NC_011004.1 1102411 1103274 R PFAM: IstB domain protein ATP-binding protein; SMART: ATPase AAA; KEGG: nha:Nham_3913 IstB-like ATP-binding protein; IstB domain-containing protein ATP-binding protein complement(1102411..1103274) Rhodopseudomonas palustris TIE-1 6408694 YP_001990071.1 CDS Rpal_1039 NC_011004.1 1103274 1104764 R PFAM: Integrase catalytic region; KEGG: nha:Nham_3914 integrase, catalytic region; integrase catalytic subunit complement(1103274..1104764) Rhodopseudomonas palustris TIE-1 6408695 YP_001990072.1 CDS Rpal_1040 NC_011004.1 1105025 1106854 R PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bbt:BBta_p0072 multicopper oxidase domain; multicopper oxidase type 3 complement(1105025..1106854) Rhodopseudomonas palustris TIE-1 6408696 YP_001990073.1 CDS Rpal_1042 NC_011004.1 1107714 1110155 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_p0125 copper-translocating P-type ATPase; ATPase P 1107714..1110155 Rhodopseudomonas palustris TIE-1 6408698 YP_001990074.1 CDS Rpal_1044 NC_011004.1 1110610 1111556 R KEGG: cak:Caul_5240 ISSpo6, transposase orf A; Transposase and inactivated derivatives-like protein complement(join(1110610..1111212,1111212..1111556)) Rhodopseudomonas palustris TIE-1 6408700 YP_001990075.1 CDS Rpal_1045 NC_011004.1 1112164 1115313 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: psa:PST_3361 heavy metal efflux pump CzcA; CzcA family heavy metal efflux pump complement(1112164..1115313) Rhodopseudomonas palustris TIE-1 6408701 YP_001990076.1 CDS Rpal_1046 NC_011004.1 1115328 1116626 R TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: sfu:Sfum_2436 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1115328..1116626) Rhodopseudomonas palustris TIE-1 6408702 YP_001990077.1 CDS Rpal_1047 NC_011004.1 1116652 1118127 R PFAM: outer membrane efflux protein; KEGG: mxa:MXAN_0990 cation efflux system protein CusC; outer membrane efflux protein complement(1116652..1118127) Rhodopseudomonas palustris TIE-1 6408703 YP_001990078.1 CDS Rpal_1048 NC_011004.1 1118653 1119114 R PFAM: protein of unknown function DUF411; KEGG: bbt:BBta_p0065 exported protein of unknown function; hypothetical protein complement(1118653..1119114) Rhodopseudomonas palustris TIE-1 6408704 YP_001990079.1 CDS Rpal_1049 NC_011004.1 1119323 1120195 R PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: gox:GOX2175 ATP synthase gamma chain; H+transporting two-sector ATPase subunit gamma complement(1119323..1120195) Rhodopseudomonas palustris TIE-1 6408705 YP_001990080.1 CDS Rpal_1050 NC_011004.1 1120192 1121745 R produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(1120192..1121745) Rhodopseudomonas palustris TIE-1 6408706 YP_001990081.1 CDS Rpal_1051 NC_011004.1 1121726 1122472 R PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: gox:GOX2173 ATP synthase subunit B; H+transporting two-sector ATPase subunit B/B' complement(1121726..1122472) Rhodopseudomonas palustris TIE-1 6408707 YP_001990082.1 CDS Rpal_1052 NC_011004.1 1122477 1122722 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(1122477..1122722) Rhodopseudomonas palustris TIE-1 6408708 YP_001990083.1 CDS Rpal_1053 NC_011004.1 1122719 1123417 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(1122719..1123417) Rhodopseudomonas palustris TIE-1 6408709 YP_001990084.1 CDS Rpal_1054 NC_011004.1 1123414 1123719 R KEGG: gox:GOX2170 transmembrane protein; hypothetical protein complement(1123414..1123719) Rhodopseudomonas palustris TIE-1 6408710 YP_001990085.1 CDS Rpal_1055 NC_011004.1 1123716 1124033 R TIGRFAM: F0F1-ATPase subunit; PFAM: F0F1-ATPase subunit KEGG: bxe:Bxe_C0047 ATP synthesis-related protein; F0F1-ATPase subunit complement(1123716..1124033) Rhodopseudomonas palustris TIE-1 6408711 YP_001990086.1 CDS Rpal_1056 NC_011004.1 1124030 1124449 R produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit epsilon complement(1124030..1124449) Rhodopseudomonas palustris TIE-1 6408712 YP_001990087.1 CDS Rpal_1057 NC_011004.1 1124446 1125870 R produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(1124446..1125870) Rhodopseudomonas palustris TIE-1 6408713 YP_001990088.1 CDS Rpal_1058 NC_011004.1 1126447 1126995 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1126447..1126995 Rhodopseudomonas palustris TIE-1 6408714 YP_001990089.1 CDS Rpal_1059 NC_011004.1 1126992 1127630 D PFAM: protein of unknown function DUF1109; KEGG: bja:blr4929 hypothetical protein; hypothetical protein 1126992..1127630 Rhodopseudomonas palustris TIE-1 6408715 YP_001990090.1 CDS Rpal_1060 NC_011004.1 1127760 1127996 D hypothetical protein 1127760..1127996 Rhodopseudomonas palustris TIE-1 6408716 YP_001990091.1 CDS Rpal_1062 NC_011004.1 1128648 1128911 D KEGG: bbt:BBta_p0110 exported protein of unknown function; hypothetical protein 1128648..1128911 Rhodopseudomonas palustris TIE-1 6408718 YP_001990092.1 CDS Rpal_1064 NC_011004.1 1130069 1131289 R KEGG: bbt:BBta_p0145 membrane protein of unknown function; hypothetical protein complement(1130069..1131289) Rhodopseudomonas palustris TIE-1 6408720 YP_001990093.1 CDS Rpal_1066 NC_011004.1 1133573 1133953 D KEGG: bbt:BBta_3429 exported protein of unknown function; hypothetical protein 1133573..1133953 Rhodopseudomonas palustris TIE-1 6408722 YP_001990094.1 CDS Rpal_1068 NC_011004.1 1134574 1135125 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1134574..1135125 Rhodopseudomonas palustris TIE-1 6408724 YP_001990095.1 CDS Rpal_1069 NC_011004.1 1135122 1135760 D PFAM: protein of unknown function DUF1109; KEGG: bja:blr4929 hypothetical protein; hypothetical protein 1135122..1135760 Rhodopseudomonas palustris TIE-1 6408725 YP_001990096.1 CDS Rpal_1070 NC_011004.1 1135900 1136130 D hypothetical protein 1135900..1136130 Rhodopseudomonas palustris TIE-1 6408726 YP_001990097.1 CDS Rpal_1071 NC_011004.1 1136163 1136405 D KEGG: nha:Nham_1942 hypothetical protein; hypothetical protein 1136163..1136405 Rhodopseudomonas palustris TIE-1 6408727 YP_001990098.1 CDS Rpal_1072 NC_011004.1 1136895 1139162 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_p0056 copper-transporting P-type ATPase; ATPase P 1136895..1139162 Rhodopseudomonas palustris TIE-1 6408728 YP_001990099.1 CDS Rpal_1073 NC_011004.1 1139184 1139429 D KEGG: pna:Pnap_1254 hypothetical protein; hypothetical protein 1139184..1139429 Rhodopseudomonas palustris TIE-1 6408729 YP_001990100.1 CDS Rpal_1074 NC_011004.1 1139704 1140531 R PFAM: transposase IS4 family protein; KEGG: gox:GOX2731 transposase (class IV); transposase IS4 family protein complement(1139704..1140531) Rhodopseudomonas palustris TIE-1 6408730 YP_001990101.1 CDS Rpal_1077 NC_011004.1 1142470 1143300 R PFAM: conserved hypothetical protein; KEGG: bbt:BBta_p0149 hypothetical protein; hypothetical protein complement(1142470..1143300) Rhodopseudomonas palustris TIE-1 6408733 YP_001990102.1 CDS Rpal_1078 NC_011004.1 1143527 1144891 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bbt:BBta_p0148 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 1143527..1144891 Rhodopseudomonas palustris TIE-1 6408734 YP_001990103.1 CDS Rpal_1079 NC_011004.1 1144951 1145205 R KEGG: bbt:BBta_p0110 exported protein of unknown function; hypothetical protein complement(1144951..1145205) Rhodopseudomonas palustris TIE-1 6408735 YP_001990104.1 CDS Rpal_1080 NC_011004.1 1145535 1145864 D KEGG: bbt:BBta_p0147 exported protein of unknown function; hypothetical protein 1145535..1145864 Rhodopseudomonas palustris TIE-1 6408736 YP_001990105.1 CDS Rpal_1082 NC_011004.1 1147384 1147797 D PFAM: protein of unknown function DUF1622; KEGG: bbt:BBta_p0144 membrane protein of unknown function; hypothetical protein 1147384..1147797 Rhodopseudomonas palustris TIE-1 6408738 YP_001990106.1 CDS Rpal_1083 NC_011004.1 1147782 1149566 R KEGG: bbt:BBta_p0197 hypothetical protein; hypothetical protein complement(1147782..1149566) Rhodopseudomonas palustris TIE-1 6408739 YP_001990107.1 CDS Rpal_1084 NC_011004.1 1149739 1150434 D PFAM: protein of unknown function DUF1520; KEGG: bja:bll4817 hypothetical protein; hypothetical protein 1149739..1150434 Rhodopseudomonas palustris TIE-1 6408740 YP_001990108.1 CDS Rpal_1085 NC_011004.1 1150461 1152569 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding protein; KEGG: bja:bll4816 hypothetical protein; oxidoreductase FAD-binding protein 1150461..1152569 Rhodopseudomonas palustris TIE-1 6408741 YP_001990109.1 CDS Rpal_1086 NC_011004.1 1152571 1153266 D KEGG: bja:bll4815 hypothetical protein; hypothetical protein 1152571..1153266 Rhodopseudomonas palustris TIE-1 6408742 YP_001990110.1 CDS Rpal_1087 NC_011004.1 1153263 1154039 D KEGG: bja:bll4814 hypothetical protein; hypothetical protein 1153263..1154039 Rhodopseudomonas palustris TIE-1 6408743 YP_001990111.1 CDS Rpal_1088 NC_011004.1 1155293 1155670 R hypothetical protein complement(1155293..1155670) Rhodopseudomonas palustris TIE-1 6408744 YP_001990112.1 CDS Rpal_1089 NC_011004.1 1155910 1156200 D KEGG: nha:Nham_4383 hypothetical protein; hypothetical protein 1155910..1156200 Rhodopseudomonas palustris TIE-1 6408745 YP_001990113.1 CDS Rpal_1090 NC_011004.1 1156204 1157655 D KEGG: nha:Nham_4633 outer membrane efflux protein; outer membrane efflux protein 1156204..1157655 Rhodopseudomonas palustris TIE-1 6408746 YP_001990114.1 CDS Rpal_1091 NC_011004.1 1157668 1159050 D PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bbt:BBta_p0117 twin-arginine translocation pathway signal; copper resistance protein (CopA); multicopper oxidase type 3 1157668..1159050 Rhodopseudomonas palustris TIE-1 6408747 YP_001990115.1 CDS Rpal_1092 NC_011004.1 1159047 1159544 D PFAM: blue (type 1) copper domain protein; KEGG: xau:Xaut_4902 blue (type 1) copper domain protein; blue (type 1) copper domain-containing protein 1159047..1159544 Rhodopseudomonas palustris TIE-1 6408748 YP_001990116.1 CDS Rpal_1093 NC_011004.1 1159574 1159879 D KEGG: bbt:BBta_p0116 hypothetical protein; hypothetical protein 1159574..1159879 Rhodopseudomonas palustris TIE-1 6408749 YP_001990117.1 CDS Rpal_1094 NC_011004.1 1159954 1160619 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mes:Meso_3863 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 1159954..1160619 Rhodopseudomonas palustris TIE-1 6408750 YP_001990118.1 CDS Rpal_1095 NC_011004.1 1160849 1161877 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: nha:Nham_3900 transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein 1160849..1161877 Rhodopseudomonas palustris TIE-1 6408751 YP_001990119.1 CDS Rpal_1096 NC_011004.1 1162499 1162681 R KEGG: bra:BRADO2812 hypothetical protein; hypothetical protein complement(1162499..1162681) Rhodopseudomonas palustris TIE-1 6408752 YP_001990120.1 CDS Rpal_1097 NC_011004.1 1163192 1164082 D KEGG: bbt:BBta_1404 hypothetical protein; hypothetical protein 1163192..1164082 Rhodopseudomonas palustris TIE-1 6408753 YP_001990121.1 CDS Rpal_1098 NC_011004.1 1164063 1164425 D KEGG: lpp:lpp1217 hypothetical protein; hypothetical protein 1164063..1164425 Rhodopseudomonas palustris TIE-1 6408754 YP_001990122.1 CDS Rpal_1099 NC_011004.1 1164974 1166158 D KEGG: bbt:BBta_5400 membrane protein of unknown function with acyltransferase family protein domain; hypothetical protein 1164974..1166158 Rhodopseudomonas palustris TIE-1 6408755 YP_001990123.1 CDS Rpal_1100 NC_011004.1 1166311 1166775 R hypothetical protein complement(1166311..1166775) Rhodopseudomonas palustris TIE-1 6408756 YP_001990124.1 CDS Rpal_1101 NC_011004.1 1166772 1167986 R hypothetical protein complement(1166772..1167986) Rhodopseudomonas palustris TIE-1 6408757 YP_001990125.1 CDS Rpal_1102 NC_011004.1 1168088 1168858 R KEGG: mab:MAB_3233 hypothetical protein; hypothetical protein complement(1168088..1168858) Rhodopseudomonas palustris TIE-1 6408758 YP_001990126.1 CDS Rpal_1103 NC_011004.1 1169446 1169991 R KEGG: bbt:BBta_p0070 cytochrome C class I protein; cytochrome C class I protein complement(1169446..1169991) Rhodopseudomonas palustris TIE-1 6408759 YP_001990127.1 CDS Rpal_1104 NC_011004.1 1170221 1171399 R KEGG: bbt:BBta_p0208 membrane protein of unknown function; hypothetical protein complement(1170221..1171399) Rhodopseudomonas palustris TIE-1 6408760 YP_001990128.1 CDS Rpal_1105 NC_011004.1 1171598 1171765 R hypothetical protein complement(1171598..1171765) Rhodopseudomonas palustris TIE-1 6408761 YP_001990129.1 CDS Rpal_1106 NC_011004.1 1172683 1174284 R PFAM: filamentation induced by cAMP protein Fic; KEGG: dol:Dole_0828 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(1172683..1174284) Rhodopseudomonas palustris TIE-1 6408762 YP_001990130.1 CDS Rpal_1108 NC_011004.1 1176314 1177042 D PFAM: IstB domain protein ATP-binding protein; SMART: ATPase AAA; KEGG: bja:bll8199 transposase; IstB domain-containing protein ATP-binding protein 1176314..1177042 Rhodopseudomonas palustris TIE-1 6408764 YP_001990131.1 CDS Rpal_1111 NC_011004.1 1178947 1179303 R PFAM: IS66 Orf2 family protein; KEGG: azc:AZC_1284 transposase; IS66 Orf2 family protein complement(1178947..1179303) Rhodopseudomonas palustris TIE-1 6408767 YP_001990132.1 CDS Rpal_1112 NC_011004.1 1179300 1179749 R PFAM: transposase IS3/IS911 family protein; KEGG: nha:Nham_3008 transposase IS3/IS911; transposase IS3/IS911 family protein complement(1179300..1179749) Rhodopseudomonas palustris TIE-1 6408768 YP_001990133.1 CDS Rpal_1114 NC_011004.1 1180059 1183502 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mgm:Mmc1_1385 TPR repeat-containing protein; hypothetical protein complement(1180059..1183502) Rhodopseudomonas palustris TIE-1 6408770 YP_001990134.1 CDS Rpal_1116 NC_011004.1 1184889 1185056 R KEGG: nha:Nham_1982 hypothetical protein; hypothetical protein complement(1184889..1185056) Rhodopseudomonas palustris TIE-1 6408772 YP_001990135.1 CDS Rpal_1117 NC_011004.1 1185058 1185300 R KEGG: nha:Nham_1357 hypothetical protein; hypothetical protein complement(1185058..1185300) Rhodopseudomonas palustris TIE-1 6408773 YP_001990136.1 CDS Rpal_1118 NC_011004.1 1185251 1185577 R hypothetical protein complement(1185251..1185577) Rhodopseudomonas palustris TIE-1 6408774 YP_001990137.1 CDS Rpal_1119 NC_011004.1 1185879 1186073 D KEGG: nha:Nham_1356 hypothetical protein; hypothetical protein 1185879..1186073 Rhodopseudomonas palustris TIE-1 6408775 YP_001990138.1 CDS Rpal_1120 NC_011004.1 1186082 1186660 D hypothetical protein 1186082..1186660 Rhodopseudomonas palustris TIE-1 6408776 YP_001990139.1 CDS Rpal_1121 NC_011004.1 1186657 1187427 D KEGG: gsu:GSU2110 hypothetical protein; hypothetical protein 1186657..1187427 Rhodopseudomonas palustris TIE-1 6408777 YP_001990140.1 CDS Rpal_1122 NC_011004.1 1187424 1187999 D KEGG: gsu:GSU2109 hypothetical protein; hypothetical protein 1187424..1187999 Rhodopseudomonas palustris TIE-1 6408778 YP_001990141.1 CDS Rpal_1123 NC_011004.1 1188010 1191543 D KEGG: gsu:GSU2108 hypothetical protein; hypothetical protein 1188010..1191543 Rhodopseudomonas palustris TIE-1 6408779 YP_001990142.1 CDS Rpal_1124 NC_011004.1 1191554 1195534 D KEGG: gsu:GSU2107 hypothetical protein; hypothetical protein 1191554..1195534 Rhodopseudomonas palustris TIE-1 6408780 YP_001990143.1 CDS Rpal_1125 NC_011004.1 1195540 1198110 D PFAM: PglZ domain protein; KEGG: gsu:GSU2106 hypothetical protein; PglZ domain-containing protein 1195540..1198110 Rhodopseudomonas palustris TIE-1 6408781 YP_001990144.1 CDS Rpal_1126 NC_011004.1 1198114 1200150 D KEGG: gsu:GSU2105 hypothetical protein; hypothetical protein 1198114..1200150 Rhodopseudomonas palustris TIE-1 6408782 YP_001990145.1 CDS Rpal_1127 NC_011004.1 1200150 1201118 D KEGG: rha:RHA1_ro08741 hypothetical protein; hypothetical protein 1200150..1201118 Rhodopseudomonas palustris TIE-1 6408783 YP_001990146.1 CDS Rpal_1128 NC_011004.1 1201130 1201933 R KEGG: xcb:XC_2667 chromosome segregation protein; hypothetical protein complement(1201130..1201933) Rhodopseudomonas palustris TIE-1 6408784 YP_001990147.1 CDS Rpal_1129 NC_011004.1 1201926 1203074 R hypothetical protein complement(1201926..1203074) Rhodopseudomonas palustris TIE-1 6408785 YP_001990148.1 CDS Rpal_1130 NC_011004.1 1203053 1203415 R hypothetical protein complement(1203053..1203415) Rhodopseudomonas palustris TIE-1 6408786 YP_001990149.1 CDS Rpal_1131 NC_011004.1 1203420 1203986 R hypothetical protein complement(1203420..1203986) Rhodopseudomonas palustris TIE-1 6408787 YP_001990150.1 CDS Rpal_1133 NC_011004.1 1204534 1204983 D KEGG: bbt:BBta_3431 hypothetical protein; hypothetical protein 1204534..1204983 Rhodopseudomonas palustris TIE-1 6408789 YP_001990151.1 CDS Rpal_1134 NC_011004.1 1204986 1205711 D PFAM: protein of unknown function DUF159; KEGG: bbt:BBta_3432 hypothetical protein; hypothetical protein 1204986..1205711 Rhodopseudomonas palustris TIE-1 6408790 YP_001990152.1 CDS Rpal_1135 NC_011004.1 1205849 1206736 D hypothetical protein 1205849..1206736 Rhodopseudomonas palustris TIE-1 6408791 YP_001990153.1 CDS Rpal_1136 NC_011004.1 1206736 1207035 D KEGG: pna:Pnap_4679 hypothetical protein; hypothetical protein 1206736..1207035 Rhodopseudomonas palustris TIE-1 6408792 YP_001990154.1 CDS Rpal_1137 NC_011004.1 1207067 1207864 D KEGG: reh:H16_B0149 hypothetical protein; hypothetical protein 1207067..1207864 Rhodopseudomonas palustris TIE-1 6408793 YP_001990155.1 CDS Rpal_1138 NC_011004.1 1208034 1208864 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1208034..1208864 Rhodopseudomonas palustris TIE-1 6408794 YP_001990156.1 CDS Rpal_1139 NC_011004.1 1208874 1209818 R hypothetical protein complement(1208874..1209818) Rhodopseudomonas palustris TIE-1 6408795 YP_001990157.1 CDS Rpal_1140 NC_011004.1 1210180 1211601 D hypothetical protein 1210180..1211601 Rhodopseudomonas palustris TIE-1 6408796 YP_001990158.1 CDS Rpal_1141 NC_011004.1 1211795 1212379 D hypothetical protein 1211795..1212379 Rhodopseudomonas palustris TIE-1 6408797 YP_001990159.1 CDS Rpal_1142 NC_011004.1 1212385 1213146 D KEGG: oan:Oant_1849 hypothetical protein; hypothetical protein 1212385..1213146 Rhodopseudomonas palustris TIE-1 6408798 YP_001990160.1 CDS Rpal_1143 NC_011004.1 1213175 1213672 R hypothetical protein complement(1213175..1213672) Rhodopseudomonas palustris TIE-1 6408799 YP_001990161.1 CDS Rpal_1145 NC_011004.1 1214422 1215051 R KEGG: ade:Adeh_0499 hypothetical protein; hypothetical protein complement(1214422..1215051) Rhodopseudomonas palustris TIE-1 6408801 YP_001990162.1 CDS Rpal_1146 NC_011004.1 1215361 1215555 D hypothetical protein 1215361..1215555 Rhodopseudomonas palustris TIE-1 6408802 YP_001990163.1 CDS Rpal_1147 NC_011004.1 1215731 1216693 D KEGG: bja:bll8084 hypothetical protein; hypothetical protein 1215731..1216693 Rhodopseudomonas palustris TIE-1 6408803 YP_001990164.1 CDS Rpal_1148 NC_011004.1 1216690 1217358 D KEGG: nha:Nham_3778 hypothetical protein; hypothetical protein 1216690..1217358 Rhodopseudomonas palustris TIE-1 6408804 YP_001990165.1 CDS Rpal_1149 NC_011004.1 1217355 1217561 D KEGG: nha:Nham_3779 metallophosphoesterase; metallophosphoesterase 1217355..1217561 Rhodopseudomonas palustris TIE-1 6408805 YP_001990166.1 CDS Rpal_1150 NC_011004.1 1217551 1219122 D PFAM: ATPase AAA; KEGG: nha:Nham_3781 ATPase AAA; ATPase AAA 1217551..1219122 Rhodopseudomonas palustris TIE-1 6408806 YP_001990167.1 CDS Rpal_1152 NC_011004.1 1221959 1222960 D PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: bbt:BBta_1994 uptake hydrogenase accessory; NADH ubiquinone oxidoreductase 20 kDa subunit 1221959..1222960 Rhodopseudomonas palustris TIE-1 6408808 YP_001990168.1 CDS Rpal_1153 NC_011004.1 1222957 1224402 D PFAM: nickel-dependent hydrogenase large subunit; KEGG: bbt:BBta_1995 uptake hydrogenase accessory; nickel-dependent hydrogenase large subunit 1222957..1224402 Rhodopseudomonas palustris TIE-1 6408809 YP_001990169.1 CDS Rpal_1154 NC_011004.1 1224638 1225750 D KEGG: bja:bll6942 uptake hydrogenase precursor; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein; hydrogenase (NiFe) small subunit HydA 1224638..1225750 Rhodopseudomonas palustris TIE-1 6408810 YP_001990170.1 CDS Rpal_1155 NC_011004.1 1225769 1227562 D PFAM: nickel-dependent hydrogenase large subunit; KEGG: bbt:BBta_1997 uptake hydrogenase large subunit precursor; nickel-dependent hydrogenase large subunit 1225769..1227562 Rhodopseudomonas palustris TIE-1 6408811 YP_001990171.1 CDS Rpal_1156 NC_011004.1 1227579 1228307 D TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: bja:blr6947 probable Ni/Fe-hydrogenase B-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 1227579..1228307 Rhodopseudomonas palustris TIE-1 6408812 YP_001990172.1 CDS Rpal_1157 NC_011004.1 1228435 1229022 D TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: bja:bll6939 HupD protein; hydrogenase expression/formation protein 1228435..1229022 Rhodopseudomonas palustris TIE-1 6408813 YP_001990173.1 CDS Rpal_1158 NC_011004.1 1229036 1229629 D PFAM: HupE/UreJ protein; KEGG: psb:Psyr_4454 HupE/UreJ protein; HupE/UreJ protein 1229036..1229629 Rhodopseudomonas palustris TIE-1 6408814 YP_001990174.1 CDS Rpal_1159 NC_011004.1 1229651 1229953 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: bja:bsl6938 hydrogenase expression/formation protein; hydrogenase assembly chaperone HypC/HupF 1229651..1229953 Rhodopseudomonas palustris TIE-1 6408815 YP_001990175.1 CDS Rpal_1160 NC_011004.1 1230174 1230575 D PFAM: hydrogenase-1 expression HyaE; KEGG: bra:BRADO1689 hydrogenase expression/formation protein HupG; hydrogenase-1 expression HyaE 1230174..1230575 Rhodopseudomonas palustris TIE-1 6408816 YP_001990176.1 CDS Rpal_1161 NC_011004.1 1230572 1231438 D PFAM: HupH hydrogenase expression protein; KEGG: bja:bll6936 HupH protein; HupH hydrogenase expression protein 1230572..1231438 Rhodopseudomonas palustris TIE-1 6408817 YP_001990177.1 CDS Rpal_1162 NC_011004.1 1231435 1231647 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: azo:azo3796 probable rubredoxin protein; rubredoxin-type Fe(Cys)4 protein 1231435..1231647 Rhodopseudomonas palustris TIE-1 6408818 YP_001990178.1 CDS Rpal_1163 NC_011004.1 1231637 1232161 D KEGG: bja:bll6934 HupJ protein; HupJ protein 1231637..1232161 Rhodopseudomonas palustris TIE-1 6408819 YP_001990179.1 CDS Rpal_1164 NC_011004.1 1232158 1233267 D KEGG: bbt:BBta_2005 hydrogenase expression/formation; hydrogenase expression/formation 1232158..1233267 Rhodopseudomonas palustris TIE-1 6408820 YP_001990180.1 CDS Rpal_1165 NC_011004.1 1233260 1233601 D TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: bja:bll6932 HypA protein; hydrogenase nickel incorporation protein HypA 1233260..1233601 Rhodopseudomonas palustris TIE-1 6408821 YP_001990181.1 CDS Rpal_1166 NC_011004.1 1233601 1234557 D TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: bbt:BBta_2007 hydrogenase nickel incorporation; hydrogenase nickel incorporation protein HypB 1233601..1234557 Rhodopseudomonas palustris TIE-1 6408822 YP_001990182.1 CDS Rpal_1167 NC_011004.1 1234562 1236835 D TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: bbt:BBta_2008 carbamoyl phosphate phosphatase, (NiFe) hydrogenase maturation protein; (NiFe) hydrogenase maturation protein HypF 1234562..1236835 Rhodopseudomonas palustris TIE-1 6408823 YP_001990183.1 CDS Rpal_1168 NC_011004.1 1236835 1237068 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: bja:bsl6929 hydrogenase expression/formation protein; hydrogenase assembly chaperone HypC/HupF 1236835..1237068 Rhodopseudomonas palustris TIE-1 6408824 YP_001990184.1 CDS Rpal_1169 NC_011004.1 1237065 1238207 D TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: bbt:BBta_2010 hydrogenase expression/formation; hydrogenase expression/formation protein HypD 1237065..1238207 Rhodopseudomonas palustris TIE-1 6408825 YP_001990185.1 CDS Rpal_1170 NC_011004.1 1238204 1239250 D TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: bbt:BBta_2011 hydrogenase maturation; hydrogenase expression/formation protein HypE 1238204..1239250 Rhodopseudomonas palustris TIE-1 6408826 YP_001990186.1 CDS Rpal_1171 NC_011004.1 1239291 1240739 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; SMART: ATPase AAA; KEGG: bra:BRADO1701 two component sigma-54-dependent hydrogenase transcriptional regulator, fis family; Fis family transcriptional regulator 1239291..1240739 Rhodopseudomonas palustris TIE-1 6408827 YP_001990187.1 CDS Rpal_1172 NC_011004.1 1240729 1242081 D KEGG: bja:bll6924 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 1240729..1242081 Rhodopseudomonas palustris TIE-1 6408828 YP_001990188.1 CDS Rpal_1173 NC_011004.1 1242187 1244574 D KEGG: bja:blr5269 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 1242187..1244574 Rhodopseudomonas palustris TIE-1 6408829 YP_001990189.1 CDS Rpal_1174 NC_011004.1 1244598 1245389 R TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bra:BRADO6658 transcriptional regulator (PcaR-like), IclR family; IclR family transcriptional regulator complement(1244598..1245389) Rhodopseudomonas palustris TIE-1 6408830 YP_001990190.1 CDS Rpal_1175 NC_011004.1 1245750 1247108 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bja:bll1070 probable dioxygenase; phthalate 4,5-dioxygenase 1245750..1247108 Rhodopseudomonas palustris TIE-1 6408831 YP_001990191.1 CDS Rpal_1176 NC_011004.1 1247105 1248565 D PFAM: glutamine synthetase catalytic region; KEGG: bja:bll1069 probable glutamine synthetase; glutamine synthetase 1247105..1248565 Rhodopseudomonas palustris TIE-1 6408832 YP_001990192.1 CDS Rpal_1177 NC_011004.1 1248612 1249784 D PFAM: extracellular ligand-binding receptor; KEGG: rle:RL3906 solute-binding component of ABC transporter; extracellular ligand-binding receptor 1248612..1249784 Rhodopseudomonas palustris TIE-1 6408833 YP_001990193.1 CDS Rpal_1178 NC_011004.1 1249996 1250862 D PFAM: inner-membrane translocator; KEGG: bcs:BCAN_B0649 hypothetical protein; inner-membrane translocator 1249996..1250862 Rhodopseudomonas palustris TIE-1 6408834 YP_001990194.1 CDS Rpal_1179 NC_011004.1 1250865 1251863 D PFAM: inner-membrane translocator; KEGG: rle:RL3908 transmembrane component of ABC transporter; inner-membrane translocator 1250865..1251863 Rhodopseudomonas palustris TIE-1 6408835 YP_001990195.1 CDS Rpal_1180 NC_011004.1 1251860 1252624 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sme:SMb20785 branched-chain amino acid uptake ABC transporter ATP-binding protein; ABC transporter 1251860..1252624 Rhodopseudomonas palustris TIE-1 6408836 YP_001990196.1 CDS Rpal_1181 NC_011004.1 1252605 1253318 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH03449 probable branched-chain amino acid ABC transporter ATP-binding protein; ABC transporter 1252605..1253318 Rhodopseudomonas palustris TIE-1 6408837 YP_001990197.1 CDS Rpal_1182 NC_011004.1 1253332 1255872 R PFAM: response regulator receiver; GAF domain protein; HWE histidine kinase; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: atc:AGR_C_3927 hypothetical protein; response regulator receiver modulated GAF sensor protein complement(1253332..1255872) Rhodopseudomonas palustris TIE-1 6408838 YP_001990198.1 CDS Rpal_1183 NC_011004.1 1256130 1256873 D SMART: regulatory protein Crp; KEGG: bja:blr0536 transcriptional regulatory protein; Crp/Fnr family transcriptional regulator 1256130..1256873 Rhodopseudomonas palustris TIE-1 6408839 YP_001990199.1 CDS Rpal_1184 NC_011004.1 1256895 1257626 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bbt:BBta_6056 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator complement(1256895..1257626) Rhodopseudomonas palustris TIE-1 6408840 YP_001990200.1 CDS Rpal_1185 NC_011004.1 1257793 1258368 D PFAM: phosphoglycerate mutase; KEGG: bja:bll327 probable cobalamin synthesis protein; phosphoglycerate mutase 1257793..1258368 Rhodopseudomonas palustris TIE-1 6408841 YP_001990201.1 CDS Rpal_1186 NC_011004.1 1258811 1259146 D KEGG: rsq:Rsph17025_3448 hypothetical protein; hypothetical protein 1258811..1259146 Rhodopseudomonas palustris TIE-1 6408842 YP_001990202.1 CDS Rpal_1187 NC_011004.1 1259211 1260356 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pla:Plav_0463 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(1259211..1260356) Rhodopseudomonas palustris TIE-1 6408843 YP_001990203.1 CDS Rpal_1188 NC_011004.1 1260735 1261604 R PFAM: alpha/beta hydrolase fold; KEGG: bja:bll2527 hydrolase; alpha/beta hydrolase fold protein complement(1260735..1261604) Rhodopseudomonas palustris TIE-1 6408844 YP_001990204.1 CDS Rpal_1189 NC_011004.1 1261803 1262231 D PFAM: regulatory protein ArsR; KEGG: bbt:BBta_3666 transcriptional regulatory protein, ARS family, SoxR protein; ArsR family transcriptional regulator 1261803..1262231 Rhodopseudomonas palustris TIE-1 6408845 YP_001990205.1 CDS Rpal_1190 NC_011004.1 1262245 1262625 R SMART: rhodanese domain protein; KEGG: rme:Rmet_2371 rhodanese-like protein; rhodanese domain-containing protein complement(1262245..1262625) Rhodopseudomonas palustris TIE-1 6408846 YP_001990206.1 CDS Rpal_1191 NC_011004.1 1262834 1263448 D PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: tbd:Tbd_2330 hypothetical protein; type 12 methyltransferase 1262834..1263448 Rhodopseudomonas palustris TIE-1 6408847 YP_001990207.1 CDS Rpal_1192 NC_011004.1 1263456 1263851 R TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: ppd:Ppro_2504 nitrogenase-associated protein; nitrogenase-associated protein complement(1263456..1263851) Rhodopseudomonas palustris TIE-1 6408848 YP_001990208.1 CDS Rpal_1193 NC_011004.1 1263865 1264455 R KEGG: bja:blr6953 molybdenum ABC transporter ATP-binding protein; molybdenum ABC transporter ATP-binding protein complement(1263865..1264455) Rhodopseudomonas palustris TIE-1 6408849 YP_001990209.1 CDS Rpal_1194 NC_011004.1 1264702 1265544 D TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: bja:bll6950 pyrophosphorylase; modD protein 1264702..1265544 Rhodopseudomonas palustris TIE-1 6408850 YP_001990210.1 CDS Rpal_1195 NC_011004.1 1265675 1267309 R PFAM: AMP-dependent synthetase and ligase; KEGG: xau:Xaut_4075 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(1265675..1267309) Rhodopseudomonas palustris TIE-1 6408851 YP_001990211.1 CDS Rpal_1196 NC_011004.1 1267553 1267759 D KEGG: bra:BRADO2820 hypothetical protein; hypothetical protein 1267553..1267759 Rhodopseudomonas palustris TIE-1 6408852 YP_001990212.1 CDS Rpal_1197 NC_011004.1 1267838 1268488 D PFAM: NUDIX hydrolase; KEGG: bja:bll6630 hypothetical protein; NUDIX hydrolase 1267838..1268488 Rhodopseudomonas palustris TIE-1 6408853 YP_001990213.1 CDS Rpal_1198 NC_011004.1 1268628 1269002 D extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha 1268628..1269002 Rhodopseudomonas palustris TIE-1 6408854 YP_001990214.1 CDS Rpal_1199 NC_011004.1 1269018 1269875 D extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta 1269018..1269875 Rhodopseudomonas palustris TIE-1 6408855 YP_001990215.1 CDS Rpal_1200 NC_011004.1 1270012 1270902 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bbt:BBta_2709 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator complement(1270012..1270902) Rhodopseudomonas palustris TIE-1 6408856 YP_001990216.1 CDS Rpal_1201 NC_011004.1 1271054 1272241 D PFAM: cytochrome P450; KEGG: bra:BRADO2350 cytochrome P450; cytochrome P450 1271054..1272241 Rhodopseudomonas palustris TIE-1 6408857 YP_001990217.1 CDS Rpal_1202 NC_011004.1 1272278 1274224 R PFAM: beta-lactamase domain protein; KEGG: bra:BRADO2425 hypothetical protein; beta-lactamase domain-containing protein complement(1272278..1274224) Rhodopseudomonas palustris TIE-1 6408858 YP_001990218.1 CDS Rpal_1203 NC_011004.1 1274485 1275138 D PFAM: DSBA oxidoreductase; KEGG: bja:bll0819 hypothetical protein; DSBA oxidoreductase 1274485..1275138 Rhodopseudomonas palustris TIE-1 6408859 YP_001990219.1 CDS Rpal_1204 NC_011004.1 1275271 1276035 D PFAM: protein of unknown function DUF81; KEGG: mlo:mll3907 integral membrane protein; hypothetical protein 1275271..1276035 Rhodopseudomonas palustris TIE-1 6408860 YP_001990220.1 CDS Rpal_1205 NC_011004.1 1276061 1277503 R TIGRFAM: cytochrome C oxidase accessory protein CcoG; KEGG: bra:BRADO3206 nitrogen fixation protein FixG (homologous to RdxB), with 4Fe-4S ferredoxin, iron-sulfur binding domain; cytochrome C oxidase accessory protein CcoG complement(1276061..1277503) Rhodopseudomonas palustris TIE-1 6408861 YP_001990221.1 CDS Rpal_1206 NC_011004.1 1277622 1277822 R KEGG: bja:bsr3073 hypothetical protein; hypothetical protein complement(1277622..1277822) Rhodopseudomonas palustris TIE-1 6408862 YP_001990222.1 CDS Rpal_1207 NC_011004.1 1278127 1278717 D PFAM: transcriptional regulator PadR family protein; KEGG: xau:Xaut_0164 transcriptional regulator, PadR-like family; PadR family transcriptional regulator 1278127..1278717 Rhodopseudomonas palustris TIE-1 6408863 YP_001990223.1 CDS Rpal_1208 NC_011004.1 1278806 1279339 D TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: bja:blr2485 Rieske iron-sulfur protein; ubiquinol-cytochrome C reductase, iron-sulfur subunit 1278806..1279339 Rhodopseudomonas palustris TIE-1 6408864 YP_001990224.1 CDS Rpal_1209 NC_011004.1 1279589 1279981 D KEGG: rsq:Rsph17025_1840 hypothetical protein; hypothetical protein 1279589..1279981 Rhodopseudomonas palustris TIE-1 6408865 YP_001990225.1 CDS Rpal_1210 NC_011004.1 1280163 1280363 R KEGG: bra:BRADO4593 conserved hypothetical protein; secreted protein; hypothetical protein complement(1280163..1280363) Rhodopseudomonas palustris TIE-1 6408866 YP_001990226.1 CDS Rpal_1211 NC_011004.1 1280444 1280785 D PFAM: regulatory protein ArsR; KEGG: bja:bll5773 transcriptional regulatory protein; ArsR family transcriptional regulator 1280444..1280785 Rhodopseudomonas palustris TIE-1 6408867 YP_001990227.1 CDS Rpal_1212 NC_011004.1 1280787 1281782 D TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: bra:BRADO3201 membrane fusion protein, component of an efflux pump (RND family, MFP subunit); RND family efflux transporter MFP subunit 1280787..1281782 Rhodopseudomonas palustris TIE-1 6408868 YP_001990228.1 CDS Rpal_1213 NC_011004.1 1281779 1285003 D PFAM: acriflavin resistance protein; KEGG: bja:bll5771 AcrB/AcrD/AcrF family cation efflux protein; acriflavin resistance protein 1281779..1285003 Rhodopseudomonas palustris TIE-1 6408869 YP_001990229.1 CDS Rpal_1214 NC_011004.1 1285065 1285718 D PFAM: DSBA oxidoreductase; KEGG: bja:blr1349 hypothetical protein; DSBA oxidoreductase 1285065..1285718 Rhodopseudomonas palustris TIE-1 6408870 YP_001990230.1 CDS Rpal_1215 NC_011004.1 1285927 1286238 D KEGG: eba:ebA3059 hypothetical protein; hypothetical protein 1285927..1286238 Rhodopseudomonas palustris TIE-1 6408871 YP_001990231.1 CDS Rpal_1216 NC_011004.1 1286243 1287505 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: jan:Jann_3739 oxidoreductase FAD/NAD(P)-binding; Ferric reductase transmembrane protein domain-containing protein 1286243..1287505 Rhodopseudomonas palustris TIE-1 6408872 YP_001990232.1 CDS Rpal_1217 NC_011004.1 1287502 1287867 D PFAM: cytochrome b5; KEGG: mgr:MGG_09315 hypothetical protein; cytochrome b5 1287502..1287867 Rhodopseudomonas palustris TIE-1 6408873 YP_001990233.1 CDS Rpal_1218 NC_011004.1 1287967 1289097 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: nha:Nham_3225 DNA methylase N-4/N-6; DNA methylase N-4/N-6 domain-containing protein complement(1287967..1289097) Rhodopseudomonas palustris TIE-1 6408874 YP_001990234.1 CDS Rpal_1219 NC_011004.1 1289477 1290394 D PFAM: protein of unknown function zinc metallopeptidase KEGG: nha:Nham_3224 protein of unknown function, zinc metallopeptidase; hypothetical protein 1289477..1290394 Rhodopseudomonas palustris TIE-1 6408875 YP_001990235.1 CDS Rpal_1220 NC_011004.1 1290533 1291081 D TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: bja:blr2511 molybdopterin biosynthesis protein B; molybdenum cofactor biosynthesis protein B 1290533..1291081 Rhodopseudomonas palustris TIE-1 6408876 YP_001990236.1 CDS Rpal_1221 NC_011004.1 1291194 1292012 D PFAM: coenzyme A transferase; KEGG: bja:bll1293 glutaconate CoA-transferase subunit A; coenzyme A transferase 1291194..1292012 Rhodopseudomonas palustris TIE-1 6408877 YP_001990237.1 CDS Rpal_1222 NC_011004.1 1292009 1292761 D PFAM: coenzyme A transferase; KEGG: pde:Pden_4599 CoA transferase, subunit B; coenzyme A transferase 1292009..1292761 Rhodopseudomonas palustris TIE-1 6408878 YP_001990238.1 CDS Rpal_1223 NC_011004.1 1292921 1293859 R PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: bja:bll2512 transcriptional regulatory protein; MarR family transcriptional regulator complement(1292921..1293859) Rhodopseudomonas palustris TIE-1 6408879 YP_001990239.1 CDS Rpal_1224 NC_011004.1 1294027 1294593 R KEGG: bja:bll2513 hypothetical protein; hypothetical protein complement(1294027..1294593) Rhodopseudomonas palustris TIE-1 6408880 YP_001990240.1 CDS Rpal_1225 NC_011004.1 1294774 1295934 D PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bja:blr2519 hypothetical protein; radical SAM domain-containing protein 1294774..1295934 Rhodopseudomonas palustris TIE-1 6408881 YP_001990241.1 CDS rnhB NC_011004.1 1296031 1296876 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1296031..1296876 Rhodopseudomonas palustris TIE-1 6408882 YP_001990242.1 CDS Rpal_1227 NC_011004.1 1296948 1298456 D KEGG: nha:Nham_3220 hypothetical protein; hypothetical protein 1296948..1298456 Rhodopseudomonas palustris TIE-1 6408883 YP_001990243.1 CDS Rpal_1228 NC_011004.1 1298515 1299345 R TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: bja:bll2523 hypothetical protein; phage SPO1 DNA polymerase-like protein complement(1298515..1299345) Rhodopseudomonas palustris TIE-1 6408884 YP_001990244.1 CDS Rpal_1229 NC_011004.1 1299547 1301205 D PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: bra:BRADO2020 electron transfer flavoprotein dehydrogenases; electron-transferring-flavoprotein dehydrogenase 1299547..1301205 Rhodopseudomonas palustris TIE-1 6408885 YP_001990245.1 CDS Rpal_1230 NC_011004.1 1301464 1303248 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr2525 hypothetical protein; hypothetical protein 1301464..1303248 Rhodopseudomonas palustris TIE-1 6408886 YP_001990246.1 CDS Rpal_1231 NC_011004.1 1303353 1304252 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1303353..1304252 Rhodopseudomonas palustris TIE-1 6408887 YP_001990247.1 CDS Rpal_1232 NC_011004.1 1304398 1305408 R PFAM: polyprenyl synthetase; KEGG: bbt:BBta_2349 octaprenyl diphosphate synthase; polyprenyl synthetase complement(1304398..1305408) Rhodopseudomonas palustris TIE-1 6408888 YP_001990248.1 CDS Rpal_1233 NC_011004.1 1305616 1305843 D KEGG: bbt:BBta_2350 hypothetical protein; hypothetical protein 1305616..1305843 Rhodopseudomonas palustris TIE-1 6408889 YP_001990249.1 CDS Rpal_1234 NC_011004.1 1305836 1306615 D PFAM: methyltransferase small; KEGG: bra:BRADO2025 conserved hypothetical protein; S-adenosyl-L-methionine-dependent methyltransferase domain; methyltransferase small 1305836..1306615 Rhodopseudomonas palustris TIE-1 6408890 YP_001990250.1 CDS Rpal_1235 NC_011004.1 1306861 1307763 D PFAM: peptidase S49; KEGG: bja:blr2534 proteinase; peptidase S49 1306861..1307763 Rhodopseudomonas palustris TIE-1 6408891 YP_001990251.1 CDS Rpal_1236 NC_011004.1 1307882 1308070 D KEGG: bbt:BBta_2354 hypothetical protein; hypothetical protein 1307882..1308070 Rhodopseudomonas palustris TIE-1 6408892 YP_001990252.1 CDS glyQ NC_011004.1 1308496 1309440 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1308496..1309440 Rhodopseudomonas palustris TIE-1 6408893 YP_001990253.1 CDS Rpal_1238 NC_011004.1 1309522 1309956 D PFAM: protein of unknown function DUF559; KEGG: bbt:BBta_2356 hypothetical protein; hypothetical protein 1309522..1309956 Rhodopseudomonas palustris TIE-1 6408894 YP_001990254.1 CDS glyS NC_011004.1 1309956 1312238 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1309956..1312238 Rhodopseudomonas palustris TIE-1 6408895 YP_001990255.1 CDS Rpal_1240 NC_011004.1 1312697 1313800 D KEGG: cak:Caul_3593 hypothetical protein; hypothetical protein 1312697..1313800 Rhodopseudomonas palustris TIE-1 6408896 YP_001990256.1 CDS Rpal_1241 NC_011004.1 1313814 1315100 R KEGG: acr:Acry_0183 membrane protein-like protein; membrane protein complement(1313814..1315100) Rhodopseudomonas palustris TIE-1 6408897 YP_001990257.1 CDS Rpal_1242 NC_011004.1 1315575 1315730 D KEGG: bbt:BBta_2359 hypothetical protein; hypothetical protein 1315575..1315730 Rhodopseudomonas palustris TIE-1 6408898 YP_001990258.1 CDS Rpal_1243 NC_011004.1 1315822 1318848 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 1315822..1318848 Rhodopseudomonas palustris TIE-1 6408899 YP_001990259.1 CDS Rpal_1244 NC_011004.1 1319165 1320595 D PFAM: cell wall hydrolase SleB; KEGG: nha:Nham_3504 cell wall hydrolase, SleB; cell wall hydrolase SleB 1319165..1320595 Rhodopseudomonas palustris TIE-1 6408900 YP_001990260.1 CDS Rpal_1245 NC_011004.1 1321153 1322028 R KEGG: bja:bll2540 nicotinate-mononucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(1321153..1322028) Rhodopseudomonas palustris TIE-1 6408901 YP_001990261.1 CDS Rpal_1246 NC_011004.1 1322045 1323661 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(1322045..1323661) Rhodopseudomonas palustris TIE-1 6408902 YP_001990262.1 CDS Rpal_1247 NC_011004.1 1323755 1324867 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(1323755..1324867) Rhodopseudomonas palustris TIE-1 6408903 YP_001990263.1 CDS Rpal_1248 NC_011004.1 1325221 1326207 D TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: nha:Nham_3502 alcohol dehydrogenase GroES-like; YhdH/YhfP family quinone oxidoreductase 1325221..1326207 Rhodopseudomonas palustris TIE-1 6408904 YP_001990264.1 CDS Rpal_1249 NC_011004.1 1326322 1326906 D KEGG: nha:Nham_3501 hypothetical protein; hypothetical protein 1326322..1326906 Rhodopseudomonas palustris TIE-1 6408905 YP_001990265.1 CDS Rpal_1250 NC_011004.1 1326940 1329621 R KEGG: bja:bll2549 hypothetical protein; hypothetical protein complement(1326940..1329621) Rhodopseudomonas palustris TIE-1 6408906 YP_001990266.1 CDS Rpal_1251 NC_011004.1 1329673 1330668 R KEGG: bja:bll2550 hypothetical protein; hypothetical protein complement(1329673..1330668) Rhodopseudomonas palustris TIE-1 6408907 YP_001990267.1 CDS Rpal_1252 NC_011004.1 1330665 1331171 R KEGG: nha:Nham_4022 hypothetical protein; hypothetical protein complement(1330665..1331171) Rhodopseudomonas palustris TIE-1 6408908 YP_001990268.1 CDS Rpal_1253 NC_011004.1 1331238 1331855 R PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: nha:Nham_4021 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(1331238..1331855) Rhodopseudomonas palustris TIE-1 6408909 YP_001990269.1 CDS Rpal_1254 NC_011004.1 1332033 1332203 D hypothetical protein 1332033..1332203 Rhodopseudomonas palustris TIE-1 6408910 YP_001990270.1 CDS Rpal_1255 NC_011004.1 1332210 1332866 R KEGG: bja:bll2553 3-methyladenine-DNA glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I complement(1332210..1332866) Rhodopseudomonas palustris TIE-1 6408911 YP_001990271.1 CDS Rpal_1256 NC_011004.1 1332863 1333744 R TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: nwi:Nwi_2704 glycine cleavage T protein (aminomethyl transferase); folate-binding protein YgfZ complement(1332863..1333744) Rhodopseudomonas palustris TIE-1 6408912 YP_001990272.1 CDS Rpal_1257 NC_011004.1 1333892 1335226 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 1333892..1335226 Rhodopseudomonas palustris TIE-1 6408913 YP_001990273.1 CDS Rpal_1258 NC_011004.1 1335735 1335890 D KEGG: bra:BRADO5216 hypothetical protein; hypothetical protein 1335735..1335890 Rhodopseudomonas palustris TIE-1 6408914 YP_001990274.1 CDS Rpal_1259 NC_011004.1 1335911 1336174 R KEGG: nha:Nham_4017 hypothetical protein; hypothetical protein complement(1335911..1336174) Rhodopseudomonas palustris TIE-1 6408915 YP_001990275.1 CDS Rpal_1260 NC_011004.1 1336305 1336682 R PFAM: conserved hypothetical protein; KEGG: bbt:BBta_2380 exported protein of unknown function; hypothetical protein complement(1336305..1336682) Rhodopseudomonas palustris TIE-1 6408916 YP_001990276.1 CDS Rpal_1261 NC_011004.1 1336745 1337188 R PFAM: NUDIX hydrolase; KEGG: bja:bll2562 GDP-mannose mannosyl hydrolase; NUDIX hydrolase complement(1336745..1337188) Rhodopseudomonas palustris TIE-1 6408917 YP_001990277.1 CDS Rpal_1262 NC_011004.1 1337185 1337691 R KEGG: nha:Nham_4012 hypothetical protein; hypothetical protein complement(1337185..1337691) Rhodopseudomonas palustris TIE-1 6408918 YP_001990278.1 CDS Rpal_1263 NC_011004.1 1337744 1338517 D PFAM: protein of unknown function DUF159; KEGG: bja:blr2564 hypothetical protein; hypothetical protein 1337744..1338517 Rhodopseudomonas palustris TIE-1 6408919 YP_001990279.1 CDS Rpal_1264 NC_011004.1 1338543 1338773 D KEGG: bra:BRADO3468 hypothetical protein; hypothetical protein 1338543..1338773 Rhodopseudomonas palustris TIE-1 6408920 YP_001990280.1 CDS Rpal_1265 NC_011004.1 1338770 1339066 D PFAM: plasmid stabilization system; KEGG: rle:pRL70123 stabilisation protein; plasmid stabilization system protein 1338770..1339066 Rhodopseudomonas palustris TIE-1 6408921 YP_001990281.1 CDS Rpal_1266 NC_011004.1 1339069 1340496 R PFAM: FAD linked oxidase domain protein; KEGG: bbt:BBta_2386 D-lactate ferricytochrome C oxidoreductase; FAD linked oxidase domain-containing protein complement(1339069..1340496) Rhodopseudomonas palustris TIE-1 6408922 YP_001990282.1 CDS Rpal_1267 NC_011004.1 1340615 1341595 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: bja:bll2570 hypothetical protein; Sua5/YciO/YrdC/YwlC family protein complement(1340615..1341595) Rhodopseudomonas palustris TIE-1 6408923 YP_001990283.1 CDS Rpal_1268 NC_011004.1 1341841 1342743 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_3223 transcriptional regulator; AraC family transcriptional regulator 1341841..1342743 Rhodopseudomonas palustris TIE-1 6408924 YP_001990284.1 CDS Rpal_1269 NC_011004.1 1342869 1344155 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azc:AZC_3224 4-methylmuconolactone transporter; major facilitator superfamily protein 1342869..1344155 Rhodopseudomonas palustris TIE-1 6408925 YP_001990285.1 CDS Rpal_1270 NC_011004.1 1344148 1345050 D PFAM: amidohydrolase 2; KEGG: azc:AZC_3225 2-pyrone-4,6-dicarboxylate hydrolase; amidohydrolase 2 1344148..1345050 Rhodopseudomonas palustris TIE-1 6408926 YP_001990286.1 CDS Rpal_1271 NC_011004.1 1345348 1346001 R KEGG: dre:553448 hypothetical protein LOC553448; hypothetical protein complement(1345348..1346001) Rhodopseudomonas palustris TIE-1 6408928 YP_001990287.1 CDS Rpal_1272 NC_011004.1 1346352 1347686 D PFAM: Curlin associated repeat protein; KEGG: shm:Shewmr7_3300 curlin associated repeat protein; curlin associated repeat-containing protein 1346352..1347686 Rhodopseudomonas palustris TIE-1 6408929 YP_001990288.1 CDS Rpal_1273 NC_011004.1 1347801 1348121 D KEGG: ret:RHE_PE00163 hypothetical protein; hypothetical protein 1347801..1348121 Rhodopseudomonas palustris TIE-1 6408930 YP_001990289.1 CDS Rpal_1274 NC_011004.1 1348118 1348609 D KEGG: bur:Bcep18194_B2589 hypothetical protein; hypothetical protein 1348118..1348609 Rhodopseudomonas palustris TIE-1 6408931 YP_001990290.1 CDS Rpal_1275 NC_011004.1 1348606 1349022 D KEGG: fjo:Fjoh_2350 hypothetical protein; hypothetical protein 1348606..1349022 Rhodopseudomonas palustris TIE-1 6408932 YP_001990291.1 CDS Rpal_1276 NC_011004.1 1349074 1350015 D KEGG: fjo:Fjoh_2351 curli production assembly/transport component CsgG; curli production assembly/transport component CsgG 1349074..1350015 Rhodopseudomonas palustris TIE-1 6408933 YP_001990292.1 CDS Rpal_1277 NC_011004.1 1350018 1350812 D PFAM: lytic transglycosylase; KEGG: bja:bll2706 probable transglycosylase; lytic transglycosylase 1350018..1350812 Rhodopseudomonas palustris TIE-1 6408934 YP_001990293.1 CDS Rpal_1278 NC_011004.1 1350844 1351125 R hypothetical protein complement(1350844..1351125) Rhodopseudomonas palustris TIE-1 6408935 YP_001990294.1 CDS Rpal_1279 NC_011004.1 1351400 1351660 D KEGG: xau:Xaut_1427 hypothetical protein; hypothetical protein 1351400..1351660 Rhodopseudomonas palustris TIE-1 6408936 YP_001990295.1 CDS Rpal_1280 NC_011004.1 1351814 1352485 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mag:amb3351 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; Crp/Fnr family transcriptional regulator 1351814..1352485 Rhodopseudomonas palustris TIE-1 6408937 YP_001990296.1 CDS Rpal_1281 NC_011004.1 1352601 1352789 D KEGG: azo:azo2883 conserved hypothetical secreted protein; hypothetical protein 1352601..1352789 Rhodopseudomonas palustris TIE-1 6408938 YP_001990297.1 CDS Rpal_1282 NC_011004.1 1352866 1353237 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: hha:Hhal_0074 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase 1352866..1353237 Rhodopseudomonas palustris TIE-1 6408939 YP_001990298.1 CDS Rpal_1283 NC_011004.1 1353373 1354452 D TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: bra:BRADO2133 GTP cyclohydrolase II, riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1353373..1354452 Rhodopseudomonas palustris TIE-1 6408940 YP_001990299.1 CDS Rpal_1284 NC_011004.1 1354513 1355727 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_2451 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1354513..1355727 Rhodopseudomonas palustris TIE-1 6408941 YP_001990300.1 CDS Rpal_1285 NC_011004.1 1355922 1356854 D PFAM: beta-lactamase domain protein; KEGG: bra:BRADO2135 beta-lactamase; beta-lactamase domain-containing protein 1355922..1356854 Rhodopseudomonas palustris TIE-1 6408942 YP_001990301.1 CDS Rpal_1286 NC_011004.1 1356868 1358619 R PFAM: chemotaxis sensory transducer; KEGG: bja:bll1533 methyl accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(1356868..1358619) Rhodopseudomonas palustris TIE-1 6408943 YP_001990302.1 CDS Rpal_1287 NC_011004.1 1358816 1359562 D PFAM: protein of unknown function DUF28; KEGG: bja:blr1534 hypothetical protein; hypothetical protein 1358816..1359562 Rhodopseudomonas palustris TIE-1 6408944 YP_001990303.1 CDS Rpal_1288 NC_011004.1 1359608 1359913 R KEGG: cpv:cgd1_590 hypothetical protein, proline rich C-terminus, signal peptide, very large protein; hypothetical protein complement(1359608..1359913) Rhodopseudomonas palustris TIE-1 6408945 YP_001990304.1 CDS ruvC NC_011004.1 1360115 1360639 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1360115..1360639 Rhodopseudomonas palustris TIE-1 6408946 YP_001990305.1 CDS ruvA NC_011004.1 1360824 1361441 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1360824..1361441 Rhodopseudomonas palustris TIE-1 6408947 YP_001990306.1 CDS Rpal_1291 NC_011004.1 1361438 1361863 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bbt:BBta_6907 hypothetical protein; hypothetical protein 1361438..1361863 Rhodopseudomonas palustris TIE-1 6408948 YP_001990307.1 CDS ruvB NC_011004.1 1362042 1363091 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1362042..1363091 Rhodopseudomonas palustris TIE-1 6408949 YP_001990308.1 CDS Rpal_1293 NC_011004.1 1363099 1363563 D TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: nha:Nham_3520 4-hydroxybenzoyl-CoA thioesterase; tol-pal system-associated acyl-CoA thioesterase 1363099..1363563 Rhodopseudomonas palustris TIE-1 6408950 YP_001990309.1 CDS Rpal_1294 NC_011004.1 1363663 1364973 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gbe:GbCGDNIH1_1652 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1363663..1364973 Rhodopseudomonas palustris TIE-1 6408951 YP_001990310.1 CDS Rpal_1295 NC_011004.1 1365083 1366333 D KEGG: bja:bll7876 similar to OpgC protein; OpgC protein-like protein 1365083..1366333 Rhodopseudomonas palustris TIE-1 6408952 YP_001990311.1 CDS Rpal_1296 NC_011004.1 1366391 1366858 D PFAM: protein of unknown function DUF1348; KEGG: bja:bll7210 hypothetical protein; hypothetical protein 1366391..1366858 Rhodopseudomonas palustris TIE-1 6408953 YP_001990312.1 CDS Rpal_1297 NC_011004.1 1366875 1367423 D PFAM: regulatory protein TetR; KEGG: xau:Xaut_1146 transcriptional regulator, TetR family; TetR family transcriptional regulator 1366875..1367423 Rhodopseudomonas palustris TIE-1 6408954 YP_001990313.1 CDS Rpal_1298 NC_011004.1 1367573 1367944 D PFAM: DGPFAETKE family protein; KEGG: bja:bll7171 hypothetical protein; DGPFAETKE family protein 1367573..1367944 Rhodopseudomonas palustris TIE-1 6408955 YP_001990314.1 CDS Rpal_1299 NC_011004.1 1367941 1369209 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bja:bll7170 hypothetical protein; ECF subfamily RNA polymerase sigma-24 subunit 1367941..1369209 Rhodopseudomonas palustris TIE-1 6408956 YP_001990315.1 CDS Rpal_1300 NC_011004.1 1369230 1370018 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr7165 oxidoreductase; short-chain dehydrogenase/reductase SDR complement(1369230..1370018) Rhodopseudomonas palustris TIE-1 6408957 YP_001990316.1 CDS Rpal_1301 NC_011004.1 1370259 1370435 D KEGG: rsh:Rsph17029_3809 hypothetical protein; hypothetical protein 1370259..1370435 Rhodopseudomonas palustris TIE-1 6408958 YP_001990317.1 CDS Rpal_1302 NC_011004.1 1370511 1370612 R hypothetical protein complement(1370511..1370612) Rhodopseudomonas palustris TIE-1 6408959 YP_001990318.1 CDS Rpal_1303 NC_011004.1 1370940 1371356 D PFAM: DGPFAETKE family protein; KEGG: nha:Nham_3518 hypothetical protein; DGPFAETKE family protein 1370940..1371356 Rhodopseudomonas palustris TIE-1 6408960 YP_001990319.1 CDS Rpal_1304 NC_011004.1 1371495 1372199 D PFAM: regulatory protein TetR; KEGG: nha:Nham_3517 transcriptional regulator, TetR family; TetR family transcriptional regulator 1371495..1372199 Rhodopseudomonas palustris TIE-1 6408961 YP_001990320.1 CDS Rpal_1305 NC_011004.1 1372342 1372809 D KEGG: bja:bll7160 hypothetical protein; hypothetical protein 1372342..1372809 Rhodopseudomonas palustris TIE-1 6408962 YP_001990321.1 CDS Rpal_1306 NC_011004.1 1372959 1373426 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: nha:Nham_3277 alkylhydroperoxidase AhpD core; alkylhydroperoxidase 1372959..1373426 Rhodopseudomonas palustris TIE-1 6408963 YP_001990322.1 CDS Rpal_1307 NC_011004.1 1373410 1374315 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigJ 1373410..1374315 Rhodopseudomonas palustris TIE-1 6408964 YP_001990323.1 CDS Rpal_1308 NC_011004.1 1374623 1375333 D TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: nha:Nham_3515 MotA/TolQ/ExbB proton channel; protein TolQ 1374623..1375333 Rhodopseudomonas palustris TIE-1 6408965 YP_001990324.1 CDS Rpal_1309 NC_011004.1 1375431 1375838 D PFAM: biopolymer transport protein ExbD/TolR; KEGG: bra:BRADO1171 TolR protein; biopolymer transport protein ExbD/TolR 1375431..1375838 Rhodopseudomonas palustris TIE-1 6408966 YP_001990325.1 CDS Rpal_1310 NC_011004.1 1375887 1376870 D TIGRFAM: protein TolA; KEGG: nha:Nham_3513 TolA; protein TolA 1375887..1376870 Rhodopseudomonas palustris TIE-1 6408967 YP_001990326.1 CDS tolB NC_011004.1 1376943 1378277 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1376943..1378277 Rhodopseudomonas palustris TIE-1 6408968 YP_001990327.1 CDS Rpal_1312 NC_011004.1 1378448 1380778 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: nha:Nham_3511 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains); diguanylate cyclase/phosphodiesterase 1378448..1380778 Rhodopseudomonas palustris TIE-1 6408969 YP_001990328.1 CDS Rpal_1313 NC_011004.1 1380973 1381722 D KEGG: nha:Nham_3510 hypothetical protein; hypothetical protein 1380973..1381722 Rhodopseudomonas palustris TIE-1 6408970 YP_001990329.1 CDS Rpal_1314 NC_011004.1 1382049 1382546 D TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: bja:bll7149 peptidoglycan-associated lipoprotein; peptidoglycan-associated lipoprotein 1382049..1382546 Rhodopseudomonas palustris TIE-1 6408971 YP_001990330.1 CDS Rpal_1315 NC_011004.1 1382702 1383739 D TIGRFAM: tol-pal system protein YbgF; KEGG: bja:bll7148 hypothetical protein; tol-pal system protein YbgF 1382702..1383739 Rhodopseudomonas palustris TIE-1 6408972 YP_001990331.1 CDS Rpal_1316 NC_011004.1 1383794 1384834 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: bja:bll7147 hypothetical protein; tRNA(Ile)-lysidine synthetase 1383794..1384834 Rhodopseudomonas palustris TIE-1 6408973 YP_001990332.1 CDS Rpal_1317 NC_011004.1 1385066 1386982 D KEGG: nha:Nham_3506 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; ATPase AAA; SMART: ATPase AAA; ATP-dependent metalloprotease FtsH 1385066..1386982 Rhodopseudomonas palustris TIE-1 6408974 YP_001990333.1 CDS Rpal_1318 NC_011004.1 1387115 1387864 D PFAM: AzlC family protein; KEGG: azc:AZC_0085 branched-chain amino acid transport protein; AzlC family protein 1387115..1387864 Rhodopseudomonas palustris TIE-1 6408975 YP_001990334.1 CDS Rpal_1319 NC_011004.1 1387861 1388178 D PFAM: branched-chain amino acid transport; KEGG: xau:Xaut_1764 branched-chain amino acid transport; branched-chain amino acid transport 1387861..1388178 Rhodopseudomonas palustris TIE-1 6408976 YP_001990335.1 CDS Rpal_1320 NC_011004.1 1388365 1389039 D PFAM: regulatory protein TetR; KEGG: bbt:BBta_6871 transcriptional regulator, TetR family; TetR family transcriptional regulator 1388365..1389039 Rhodopseudomonas palustris TIE-1 6408977 YP_001990336.1 CDS Rpal_1321 NC_011004.1 1389163 1390656 D PFAM: FAD linked oxidase domain protein; KEGG: bbt:BBta_1662 glycolate oxidase, subunit GlcD; FAD linked oxidase domain-containing protein 1389163..1390656 Rhodopseudomonas palustris TIE-1 6408978 YP_001990337.1 CDS Rpal_1322 NC_011004.1 1390819 1392060 D PFAM: FAD linked oxidase domain protein; KEGG: bja:bll7541 glycolate oxidase subunit; FAD linked oxidase domain-containing protein 1390819..1392060 Rhodopseudomonas palustris TIE-1 6408979 YP_001990338.1 CDS Rpal_1323 NC_011004.1 1392057 1393370 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: nha:Nham_3202 protein of unknown function DUF224, cysteine-rich region; hypothetical protein 1392057..1393370 Rhodopseudomonas palustris TIE-1 6408980 YP_001990339.1 CDS Rpal_1324 NC_011004.1 1393445 1394380 D KEGG: pae:PA5253 alginate regulatory protein AlgP; hypothetical protein 1393445..1394380 Rhodopseudomonas palustris TIE-1 6408981 YP_001990340.1 CDS Rpal_1325 NC_011004.1 1394801 1395772 D KEGG: nha:Nham_3199 hypothetical protein; hypothetical protein 1394801..1395772 Rhodopseudomonas palustris TIE-1 6408982 YP_001990341.1 CDS Rpal_1326 NC_011004.1 1396034 1397794 R PFAM: ABC transporter; SbmABacA family protein; ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_1667 ABC transporter (fused ATP-binding and permease components); ABC transporter complement(1396034..1397794) Rhodopseudomonas palustris TIE-1 6408983 YP_001990342.1 CDS Rpal_1327 NC_011004.1 1398065 1399729 D TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: bra:BRADO6118 glycolate permease (LctP family); L-lactate transport 1398065..1399729 Rhodopseudomonas palustris TIE-1 6408984 YP_001990343.1 CDS Rpal_1328 NC_011004.1 1399874 1400290 D KEGG: nwi:Nwi_2577 hypothetical protein; hypothetical protein 1399874..1400290 Rhodopseudomonas palustris TIE-1 6408985 YP_001990344.1 CDS Rpal_1329 NC_011004.1 1400293 1401798 R PFAM: FAD dependent oxidoreductase; KEGG: bja:blr7054 hypothetical protein; FAD dependent oxidoreductase complement(1400293..1401798) Rhodopseudomonas palustris TIE-1 6408986 YP_001990345.1 CDS Rpal_1330 NC_011004.1 1401911 1403104 R KEGG: bbt:BBta_1670 exported protein of unknown function; hypothetical protein complement(1401911..1403104) Rhodopseudomonas palustris TIE-1 6408987 YP_001990346.1 CDS groEL NC_011004.1 1403319 1404962 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; the rhizobia have multiple copies of the groEL gene which are active under different environmental conditions; the S. meliloti protein in this cluster is not associated with a groES gene; chaperonin GroEL complement(1403319..1404962) Rhodopseudomonas palustris TIE-1 6408988 YP_001990347.1 CDS groES NC_011004.1 1405002 1405298 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(1405002..1405298) Rhodopseudomonas palustris TIE-1 6408989 YP_001990348.1 CDS Rpal_1333 NC_011004.1 1405596 1406111 D KEGG: nha:Nham_3194 hypothetical protein; hypothetical protein 1405596..1406111 Rhodopseudomonas palustris TIE-1 6408990 YP_001990349.1 CDS Rpal_1334 NC_011004.1 1406155 1407363 D PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_1381 major facilitator superfamily MFS_1; major facilitator superfamily protein 1406155..1407363 Rhodopseudomonas palustris TIE-1 6408991 YP_001990350.1 CDS Rpal_1335 NC_011004.1 1407379 1408170 R KEGG: bra:BRADO6112 conserved hypothetical protein; methyl-accepting chemotaxis protein; chemotaxis phosphatase, CheZ complement(1407379..1408170) Rhodopseudomonas palustris TIE-1 6408992 YP_001990351.1 CDS Rpal_1336 NC_011004.1 1408471 1409259 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: nha:Nham_3192 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 1408471..1409259 Rhodopseudomonas palustris TIE-1 6408993 YP_001990352.1 CDS Rpal_1337 NC_011004.1 1409347 1410201 R KEGG: bja:blr7528 hypothetical protein; periplasmic ligand-binding sensor protein complement(1409347..1410201) Rhodopseudomonas palustris TIE-1 6408994 YP_001990353.1 CDS Rpal_1338 NC_011004.1 1410317 1411210 R PFAM: YdjC family protein; KEGG: nha:Nham_3190 YdjC-like protein; hypothetical protein complement(1410317..1411210) Rhodopseudomonas palustris TIE-1 6408995 YP_001990354.1 CDS Rpal_1339 NC_011004.1 1411207 1412250 R PFAM: glycosyl transferase family 2; KEGG: bja:blr7526 probable glycosyl transferase; family 2 glycosyl transferase complement(1411207..1412250) Rhodopseudomonas palustris TIE-1 6408996 YP_001990355.1 CDS hisG NC_011004.1 1412344 1413321 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(1412344..1413321) Rhodopseudomonas palustris TIE-1 6408997 YP_001990356.1 CDS hisZ NC_011004.1 1413318 1414466 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(1413318..1414466) Rhodopseudomonas palustris TIE-1 6408998 YP_001990357.1 CDS Rpal_1342 NC_011004.1 1414611 1415366 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1414611..1415366) Rhodopseudomonas palustris TIE-1 6408999 YP_001990358.1 CDS Rpal_1343 NC_011004.1 1415558 1416274 D KEGG: bja:bll7522 hypothetical protein; hypothetical protein 1415558..1416274 Rhodopseudomonas palustris TIE-1 6409000 YP_001990359.1 CDS ubiA NC_011004.1 1416271 1417221 D UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase 1416271..1417221 Rhodopseudomonas palustris TIE-1 6409001 YP_001990360.1 CDS Rpal_1345 NC_011004.1 1417258 1417782 R KEGG: bra:BRADO6101 hypothetical protein; hypothetical protein complement(1417258..1417782) Rhodopseudomonas palustris TIE-1 6409002 YP_001990361.1 CDS Rpal_1346 NC_011004.1 1418082 1419479 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: bja:bll7519 PmbA/TldD related protein; peptidase U62 modulator of DNA gyrase 1418082..1419479 Rhodopseudomonas palustris TIE-1 6409003 YP_001990362.1 CDS Rpal_1347 NC_011004.1 1419466 1420281 D PFAM: inositol monophosphatase; KEGG: nha:Nham_3181 inositol monophosphatase; inositol monophosphatase 1419466..1420281 Rhodopseudomonas palustris TIE-1 6409004 YP_001990363.1 CDS Rpal_1348 NC_011004.1 1420319 1420567 D KEGG: nha:Nham_3180 hypothetical protein; hypothetical protein 1420319..1420567 Rhodopseudomonas palustris TIE-1 6409005 YP_001990364.1 CDS Rpal_1349 NC_011004.1 1420655 1421941 D PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: bja:bll7515 3-deoxy-D-manno-octulosonic acid transferase-like protein; 3-deoxy-D-manno-octulosonic-acid transferase 1420655..1421941 Rhodopseudomonas palustris TIE-1 6409006 YP_001990365.1 CDS lpxK NC_011004.1 1421934 1422956 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1421934..1422956 Rhodopseudomonas palustris TIE-1 6409007 YP_001990366.1 CDS Rpal_1351 NC_011004.1 1422966 1423193 R KEGG: bja:bsr7510 hypothetical protein; hypothetical protein complement(1422966..1423193) Rhodopseudomonas palustris TIE-1 6409008 YP_001990367.1 CDS xseA NC_011004.1 1423340 1424953 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1423340..1424953) Rhodopseudomonas palustris TIE-1 6409009 YP_001990368.1 CDS Rpal_1353 NC_011004.1 1425191 1426474 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1425191..1426474 Rhodopseudomonas palustris TIE-1 6409010 YP_001990369.1 CDS Rpal_1354 NC_011004.1 1426638 1427546 D PFAM: alpha/beta hydrolase fold; KEGG: bja:bll7497 haloacetate dehalogenase; alpha/beta hydrolase fold protein 1426638..1427546 Rhodopseudomonas palustris TIE-1 6409011 YP_001990370.1 CDS Rpal_1355 NC_011004.1 1427530 1427976 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: nha:Nham_3172 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase complement(1427530..1427976) Rhodopseudomonas palustris TIE-1 6409012 YP_001990371.1 CDS Rpal_1356 NC_011004.1 1428142 1430352 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: nha:Nham_3171 pseudouridine synthase, Rsu; RNA-binding S4 domain-containing protein 1428142..1430352 Rhodopseudomonas palustris TIE-1 6409013 YP_001990372.1 CDS Rpal_1357 NC_011004.1 1430591 1431157 D TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase KEGG: bja:bll7494 hypothetical protein; methyltransferase 1430591..1431157 Rhodopseudomonas palustris TIE-1 6409014 YP_001990373.1 CDS Rpal_1358 NC_011004.1 1431361 1432383 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(1431361..1432383) Rhodopseudomonas palustris TIE-1 6409015 YP_001990374.1 CDS Rpal_1359 NC_011004.1 1432383 1432850 R PFAM: molybdopterin biosynthesis MoaE protein; KEGG: nha:Nham_3143 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE protein complement(1432383..1432850) Rhodopseudomonas palustris TIE-1 6409016 YP_001990375.1 CDS Rpal_1360 NC_011004.1 1432877 1433128 R TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: bbt:BBta_1725 molybdenum cofactor biosynthesis protein D; molybdopterin converting factor subunit 1 complement(1432877..1433128) Rhodopseudomonas palustris TIE-1 6409017 YP_001990376.1 CDS Rpal_1361 NC_011004.1 1433125 1433751 R TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: nwi:Nwi_2525 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase complement(1433125..1433751) Rhodopseudomonas palustris TIE-1 6409018 YP_001990377.1 CDS uvrC NC_011004.1 1433891 1436005 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(1433891..1436005) Rhodopseudomonas palustris TIE-1 6409019 YP_001990378.1 CDS Rpal_1363 NC_011004.1 1436316 1436939 D KEGG: nha:Nham_3147 outer-membrane immunogenic protein precursor; outer-membrane immunogenic protein 1436316..1436939 Rhodopseudomonas palustris TIE-1 6409020 YP_001990379.1 CDS Rpal_1364 NC_011004.1 1437358 1437573 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bra:BRADO6053 cold shock protein, DNA binding; cold-shock DNA-binding domain-containing protein complement(1437358..1437573) Rhodopseudomonas palustris TIE-1 6409021 YP_001990380.1 CDS Rpal_1365 NC_011004.1 1437847 1438704 R PFAM: protein of unknown function DUF519; KEGG: nwi:Nwi_2528 protein of unknown function DUF519; hypothetical protein complement(1437847..1438704) Rhodopseudomonas palustris TIE-1 6409022 YP_001990381.1 CDS Rpal_1366 NC_011004.1 1438998 1439393 D PFAM: response regulator receiver; KEGG: nha:Nham_3160 response regulator receiver domain protein (CheY-like); response regulator receiver protein 1438998..1439393 Rhodopseudomonas palustris TIE-1 6409023 YP_001990382.1 CDS Rpal_1367 NC_011004.1 1439478 1439873 R KEGG: bja:bll7455 hypothetical protein; hypothetical protein complement(1439478..1439873) Rhodopseudomonas palustris TIE-1 6409024 YP_001990383.1 CDS Rpal_1368 NC_011004.1 1440042 1440245 R PFAM: 4-oxalocrotonate tautomerase; KEGG: bbt:BBta_1741 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase complement(1440042..1440245) Rhodopseudomonas palustris TIE-1 6409025 YP_001990384.1 CDS hisS NC_011004.1 1440384 1441913 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(1440384..1441913) Rhodopseudomonas palustris TIE-1 6409026 YP_001990385.1 CDS Rpal_1370 NC_011004.1 1442128 1443474 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 1442128..1443474 Rhodopseudomonas palustris TIE-1 6409027 YP_001990386.1 CDS Rpal_1371 NC_011004.1 1443571 1445136 D PFAM: EAL domain protein; KEGG: bra:BRADO6063 conserved hypothetical protein; signal peptide; EAL domain; diguanylate phosphodiesterase 1443571..1445136 Rhodopseudomonas palustris TIE-1 6409028 YP_001990387.1 CDS Rpal_1372 NC_011004.1 1445149 1446003 D TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:blr7478 hypothetical protein; HAD family hydrolase 1445149..1446003 Rhodopseudomonas palustris TIE-1 6409029 YP_001990388.1 CDS Rpal_1373 NC_011004.1 1446035 1448098 R KEGG: bra:BRADO1961 hypothetical protein; hypothetical protein complement(1446035..1448098) Rhodopseudomonas palustris TIE-1 6409030 YP_001990389.1 CDS Rpal_1374 NC_011004.1 1448265 1451090 R TIGRFAM: conserved hypothetical membrane protein; KEGG: nha:Nham_3253 double-transmembrane region-like; hypothetical protein complement(1448265..1451090) Rhodopseudomonas palustris TIE-1 6409031 YP_001990390.1 CDS Rpal_1375 NC_011004.1 1451087 1452019 R KEGG: bbt:BBta_2270 hypothetical protein; hypothetical protein complement(1451087..1452019) Rhodopseudomonas palustris TIE-1 6409032 YP_001990391.1 CDS Rpal_1376 NC_011004.1 1452019 1453023 R PFAM: ATPase AAA; ATPase AAA; KEGG: bra:BRADO1964 MoxR family protein; ATPase AAA complement(1452019..1453023) Rhodopseudomonas palustris TIE-1 6409033 YP_001990392.1 CDS Rpal_1377 NC_011004.1 1453257 1453868 D PFAM: protein of unknown function DUF1285; KEGG: bja:blr2466 hypothetical protein; hypothetical protein 1453257..1453868 Rhodopseudomonas palustris TIE-1 6409034 YP_001990393.1 CDS Rpal_1378 NC_011004.1 1453865 1454542 D PFAM: NUDIX hydrolase; KEGG: bra:BRADO1966 NUDIX hydrolase; NUDIX hydrolase 1453865..1454542 Rhodopseudomonas palustris TIE-1 6409035 YP_001990394.1 CDS Rpal_1379 NC_011004.1 1454539 1454802 D KEGG: bbt:BBta_2274 hypothetical protein; hypothetical protein 1454539..1454802 Rhodopseudomonas palustris TIE-1 6409036 YP_001990395.1 CDS Rpal_1380 NC_011004.1 1454799 1456055 D PFAM: polynucleotide adenylyltransferase region; KEGG: nha:Nham_3247 polynucleotide adenylyltransferase region; polynucleotide adenylyltransferase 1454799..1456055 Rhodopseudomonas palustris TIE-1 6409037 YP_001990396.1 CDS Rpal_1381 NC_011004.1 1456185 1456412 R KEGG: bja:bsl2479 hypothetical protein; hypothetical protein complement(1456185..1456412) Rhodopseudomonas palustris TIE-1 6409038 YP_001990397.1 CDS Rpal_1382 NC_011004.1 1456490 1457122 R KEGG: nwi:Nwi_2619 hypothetical protein; hypothetical protein complement(1456490..1457122) Rhodopseudomonas palustris TIE-1 6409039 YP_001990398.1 CDS Rpal_1383 NC_011004.1 1457133 1457588 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: nwi:Nwi_2618 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(1457133..1457588) Rhodopseudomonas palustris TIE-1 6409040 YP_001990399.1 CDS Rpal_1384 NC_011004.1 1457865 1458392 D TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: bja:blr2485 Rieske iron-sulfur protein; ubiquinol-cytochrome C reductase, iron-sulfur subunit 1457865..1458392 Rhodopseudomonas palustris TIE-1 6409041 YP_001990400.1 CDS Rpal_1385 NC_011004.1 1458433 1460499 D PFAM: cytochrome C1; cytochrome b/b6 domain; KEGG: bbt:BBta_2301 cytochrome b/c1; cytochrome C1 1458433..1460499 Rhodopseudomonas palustris TIE-1 6409042 YP_001990401.1 CDS Rpal_1386 NC_011004.1 1460658 1461332 D PFAM: dienelactone hydrolase; KEGG: bja:blr2487 hypothetical protein; carboxymethylenebutenolidase 1460658..1461332 Rhodopseudomonas palustris TIE-1 6409043 YP_001990402.1 CDS Rpal_1387 NC_011004.1 1461423 1461641 D KEGG: bbt:BBta_2461 hypothetical protein; hypothetical protein 1461423..1461641 Rhodopseudomonas palustris TIE-1 6409044 YP_001990403.1 CDS Rpal_1388 NC_011004.1 1461815 1462591 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_2462 short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(1461815..1462591) Rhodopseudomonas palustris TIE-1 6409045 YP_001990404.1 CDS Rpal_1389 NC_011004.1 1462588 1463226 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase complement(1462588..1463226) Rhodopseudomonas palustris TIE-1 6409046 YP_001990405.1 CDS Rpal_1390 NC_011004.1 1463350 1463760 D KEGG: nha:Nham_0766 hypothetical protein; hypothetical protein 1463350..1463760 Rhodopseudomonas palustris TIE-1 6409047 YP_001990406.1 CDS Rpal_1391 NC_011004.1 1463880 1464848 D PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: bbt:BBta_2465 heat shock (DnaJ-kile); heat shock protein DnaJ domain-containing protein 1463880..1464848 Rhodopseudomonas palustris TIE-1 6409048 YP_001990407.1 CDS Rpal_1392 NC_011004.1 1465247 1466068 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 1465247..1466068 Rhodopseudomonas palustris TIE-1 6409049 YP_001990408.1 CDS Rpal_1393 NC_011004.1 1466177 1466770 D PFAM: phosphoglycerate mutase; KEGG: bja:blr2630 phosphoglycerate mutase; phosphoglycerate mutase 1466177..1466770 Rhodopseudomonas palustris TIE-1 6409050 YP_001990409.1 CDS Rpal_1394 NC_011004.1 1466905 1467993 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1466905..1467993 Rhodopseudomonas palustris TIE-1 6409051 YP_001990410.1 CDS Rpal_1395 NC_011004.1 1468097 1469296 D PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bja:blr2632 adenylate cyclase protein; adenylate/guanylate cyclase 1468097..1469296 Rhodopseudomonas palustris TIE-1 6409052 YP_001990411.1 CDS clpS NC_011004.1 1469472 1469783 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor complement(1469472..1469783) Rhodopseudomonas palustris TIE-1 6409053 YP_001990412.1 CDS Rpal_1397 NC_011004.1 1470029 1470865 D PFAM: protein of unknown function DUF1194; KEGG: bbt:BBta_2473 exported protein of unknown function; hypothetical protein 1470029..1470865 Rhodopseudomonas palustris TIE-1 6409054 YP_001990413.1 CDS Rpal_1398 NC_011004.1 1470990 1472141 R PFAM: iron-containing alcohol dehydrogenase; KEGG: rru:Rru_A0930 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(1470990..1472141) Rhodopseudomonas palustris TIE-1 6409055 YP_001990414.1 CDS Rpal_1399 NC_011004.1 1472331 1473851 R PFAM: Aldehyde Dehydrogenase_; KEGG: mlo:mll6639 aldehyde dehydrogenase; aldehyde dehydrogenase complement(1472331..1473851) Rhodopseudomonas palustris TIE-1 6409056 YP_001990415.1 CDS Rpal_1400 NC_011004.1 1474090 1475979 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase AAA; SMART: ATPase AAA; KEGG: xau:Xaut_0367 GAF modulated sigma54 specific transcriptional regulator, fis family; Fis family transcriptional regulator 1474090..1475979 Rhodopseudomonas palustris TIE-1 6409057 YP_001990416.1 CDS Rpal_1401 NC_011004.1 1476020 1477423 R PFAM: carotenoid oxygenase; KEGG: bja:blr5790 lignostilbene-alpha,beta-dioxygenase; carotenoid oxygenase complement(1476020..1477423) Rhodopseudomonas palustris TIE-1 6409058 YP_001990417.1 CDS Rpal_1402 NC_011004.1 1477465 1478844 R KEGG: hha:Hhal_0248 hypothetical protein; hypothetical protein complement(1477465..1478844) Rhodopseudomonas palustris TIE-1 6409059 YP_001990418.1 CDS Rpal_1403 NC_011004.1 1478837 1479946 R KEGG: hha:Hhal_0249 hypothetical protein; hypothetical protein complement(1478837..1479946) Rhodopseudomonas palustris TIE-1 6409060 YP_001990419.1 CDS Rpal_1404 NC_011004.1 1479965 1481017 R KEGG: hha:Hhal_0250 hypothetical protein; hypothetical protein complement(1479965..1481017) Rhodopseudomonas palustris TIE-1 6409061 YP_001990420.1 CDS Rpal_1405 NC_011004.1 1481191 1482186 R PFAM: alpha/beta hydrolase fold; KEGG: bra:BRADO1608 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1481191..1482186) Rhodopseudomonas palustris TIE-1 6409062 YP_001990421.1 CDS Rpal_1406 NC_011004.1 1482406 1483911 R PFAM: MlrC domain protein; Microcystin LR degradation protein MlrC-like; KEGG: bja:blr5601 hypothetical protein; MlrC domain-containing protein complement(1482406..1483911) Rhodopseudomonas palustris TIE-1 6409063 YP_001990422.1 CDS Rpal_1407 NC_011004.1 1484047 1485699 R PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_5258 ABC transporter (ATP-binding protein); ABC transporter complement(1484047..1485699) Rhodopseudomonas palustris TIE-1 6409064 YP_001990423.1 CDS Rpal_1408 NC_011004.1 1485808 1486698 R PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO2920 ABC transporter (permease protein); membrane protein; ABC transporter inner membrane protein complement(1485808..1486698) Rhodopseudomonas palustris TIE-1 6409065 YP_001990424.1 CDS Rpal_1409 NC_011004.1 1486712 1487653 R PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_5256 ABC transporter (permease protein); ABC transporter inner membrane protein complement(1486712..1487653) Rhodopseudomonas palustris TIE-1 6409066 YP_001990425.1 CDS Rpal_1410 NC_011004.1 1487818 1488948 R catalyzes the release of C-terminal glutamate residues from N-acylating moieties; carboxypeptidase complement(1487818..1488948) Rhodopseudomonas palustris TIE-1 6409067 YP_001990426.1 CDS Rpal_1411 NC_011004.1 1489200 1490813 D PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_5254 ABC transporter (substrate-binding protein); ABC transporter substrate-binding protein 1489200..1490813 Rhodopseudomonas palustris TIE-1 6409068 YP_001990427.1 CDS Rpal_1412 NC_011004.1 1491353 1491988 R KEGG: sma:SAV6022 dihydrolipoamide S-succinyltransferase; hypothetical protein complement(1491353..1491988) Rhodopseudomonas palustris TIE-1 6409069 YP_001990428.1 CDS Rpal_1413 NC_011004.1 1492473 1493489 D PFAM: CBS domain containing protein; KEGG: bbt:BBta_3002 signal-transduction protein with CBS domains; signal-transduction protein with CBS domains 1492473..1493489 Rhodopseudomonas palustris TIE-1 6409070 YP_001990429.1 CDS Rpal_1414 NC_011004.1 1493540 1494331 R hypothetical protein complement(1493540..1494331) Rhodopseudomonas palustris TIE-1 6409071 YP_001990430.1 CDS Rpal_1415 NC_011004.1 1494360 1495292 R PFAM: CHAD domain containing protein; KEGG: mex:Mext_3081 CHAD domain containing protein; CHAD domain-containing protein complement(1494360..1495292) Rhodopseudomonas palustris TIE-1 6409072 YP_001990431.1 CDS Rpal_1416 NC_011004.1 1495399 1495722 R hypothetical protein complement(1495399..1495722) Rhodopseudomonas palustris TIE-1 6409073 YP_001990432.1 CDS Rpal_1417 NC_011004.1 1495991 1497814 D TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: chy:CHY_0121 indolepyruvate ferredoxin oxidoreductase, IorA subunit; indolepyruvate ferredoxin oxidoreductase subunit alpha 1495991..1497814 Rhodopseudomonas palustris TIE-1 6409074 YP_001990433.1 CDS Rpal_1418 NC_011004.1 1497811 1498755 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: swo:Swol_1195 indolepyruvate oxidoreductase subunit beta 2; pyruvate ferredoxin/flavodoxin oxidoreductase 1497811..1498755 Rhodopseudomonas palustris TIE-1 6409075 YP_001990434.1 CDS Rpal_1419 NC_011004.1 1498752 1499915 D PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: pth:PTH_0847 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha 1498752..1499915 Rhodopseudomonas palustris TIE-1 6409076 YP_001990435.1 CDS Rpal_1420 NC_011004.1 1499917 1500747 D catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 1499917..1500747 Rhodopseudomonas palustris TIE-1 6409077 YP_001990436.1 CDS Rpal_1421 NC_011004.1 1500762 1501322 D PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sat:SYN_02500 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit; pyruvate ferredoxin/flavodoxin oxidoreductase 1500762..1501322 Rhodopseudomonas palustris TIE-1 6409078 YP_001990437.1 CDS Rpal_1422 NC_011004.1 1501346 1502680 D KEGG: mag:amb1245 coenzyme F390 synthetase; phenylacetate--CoA ligase 1501346..1502680 Rhodopseudomonas palustris TIE-1 6409079 YP_001990438.1 CDS Rpal_1423 NC_011004.1 1502890 1503762 D PFAM: inner-membrane translocator; KEGG: bja:bll7932 ABC transporter permease protein; inner-membrane translocator 1502890..1503762 Rhodopseudomonas palustris TIE-1 6409080 YP_001990439.1 CDS Rpal_1424 NC_011004.1 1503765 1504910 D PFAM: inner-membrane translocator; KEGG: bja:bll7931 ABC transporter permease protein; inner-membrane translocator 1503765..1504910 Rhodopseudomonas palustris TIE-1 6409081 YP_001990440.1 CDS Rpal_1425 NC_011004.1 1504907 1505668 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll7930 ABC transporter ATP-binding protein; ABC transporter 1504907..1505668 Rhodopseudomonas palustris TIE-1 6409082 YP_001990441.1 CDS Rpal_1426 NC_011004.1 1505672 1506421 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll7929 ABC transporter ATP-binding protein; ABC transporter 1505672..1506421 Rhodopseudomonas palustris TIE-1 6409083 YP_001990442.1 CDS Rpal_1427 NC_011004.1 1506405 1508105 D PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll7928 fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 1506405..1508105 Rhodopseudomonas palustris TIE-1 6409084 YP_001990443.1 CDS Rpal_1428 NC_011004.1 1508145 1509350 D PFAM: extracellular ligand-binding receptor; KEGG: bja:bll7927 hypothetical protein; extracellular ligand-binding receptor 1508145..1509350 Rhodopseudomonas palustris TIE-1 6409085 YP_001990444.1 CDS Rpal_1429 NC_011004.1 1509534 1510730 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:blr7270 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(1509534..1510730) Rhodopseudomonas palustris TIE-1 6409086 YP_001990445.1 CDS Rpal_1430 NC_011004.1 1510749 1511885 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:blr7269 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(1510749..1511885) Rhodopseudomonas palustris TIE-1 6409087 YP_001990446.1 CDS Rpal_1431 NC_011004.1 1511889 1512737 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1511889..1512737) Rhodopseudomonas palustris TIE-1 6409088 YP_001990447.1 CDS Rpal_1432 NC_011004.1 1513089 1513862 D TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: bja:bll7073 biopolymer transport protein; tonB-system energizer ExbB 1513089..1513862 Rhodopseudomonas palustris TIE-1 6409089 YP_001990448.1 CDS Rpal_1433 NC_011004.1 1513867 1514304 D TIGRFAM: TonB system transport protein ExbD; PFAM: biopolymer transport protein ExbD/TolR; KEGG: bja:bll7072 biopolymer transport protein; TonB system transport protein ExbD 1513867..1514304 Rhodopseudomonas palustris TIE-1 6409090 YP_001990449.1 CDS Rpal_1434 NC_011004.1 1514301 1515173 D TIGRFAM: TonB family protein; KEGG: bja:bll7071 TonB protein; TonB family protein 1514301..1515173 Rhodopseudomonas palustris TIE-1 6409091 YP_001990450.1 CDS Rpal_1435 NC_011004.1 1515193 1516704 R PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_5258 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(1515193..1516704) Rhodopseudomonas palustris TIE-1 6409092 YP_001990451.1 CDS Rpal_1436 NC_011004.1 1517035 1518222 D KEGG: nha:Nham_3876 hypothetical protein; hypothetical protein 1517035..1518222 Rhodopseudomonas palustris TIE-1 6409093 YP_001990452.1 CDS Rpal_1437 NC_011004.1 1518238 1518843 D KEGG: nha:Nham_3877 hypothetical protein; hypothetical protein 1518238..1518843 Rhodopseudomonas palustris TIE-1 6409094 YP_001990453.1 CDS Rpal_1438 NC_011004.1 1518830 1519222 D PFAM: protein of unknown function DUF1469; KEGG: nha:Nham_3878 protein of unknown function DUF1469; hypothetical protein 1518830..1519222 Rhodopseudomonas palustris TIE-1 6409095 YP_001990454.1 CDS Rpal_1439 NC_011004.1 1519219 1519920 D KEGG: noc:Noc_1592 hypothetical protein; hypothetical protein 1519219..1519920 Rhodopseudomonas palustris TIE-1 6409096 YP_001990455.1 CDS Rpal_1440 NC_011004.1 1520112 1521065 D PFAM: ribonuclease BN; KEGG: bja:blr7476 hypothetical protein; ribonuclease BN 1520112..1521065 Rhodopseudomonas palustris TIE-1 6409097 YP_001990456.1 CDS Rpal_1441 NC_011004.1 1521062 1521988 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bbt:BBta_0652 transcriptional regulatory protein, LuxR family; LuxR family transcriptional regulator complement(1521062..1521988) Rhodopseudomonas palustris TIE-1 6409098 YP_001990457.1 CDS Rpal_1442 NC_011004.1 1521978 1525346 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bja:bll0966 two-component hybrid sensor and regulator; integral membrane sensor hybrid histidine kinase complement(1521978..1525346) Rhodopseudomonas palustris TIE-1 6409099 YP_001990458.1 CDS Rpal_1443 NC_011004.1 1525603 1526865 D TIGRFAM: urea ABC transporter urea binding protein; KEGG: bja:blr0967 ABC transporter substrate-binding protein; urea ABC transporter substrate-binding protein 1525603..1526865 Rhodopseudomonas palustris TIE-1 6409100 YP_001990459.1 CDS Rpal_1444 NC_011004.1 1527032 1527958 D TIGRFAM: urea ABC transporter permease protein UrtB; PFAM: inner-membrane translocator; KEGG: bja:blr0968 ABC transporter permease protein; urea ABC transporter permease 1527032..1527958 Rhodopseudomonas palustris TIE-1 6409101 YP_001990460.1 CDS Rpal_1445 NC_011004.1 1527973 1529124 D TIGRFAM: urea ABC transporter permease protein UrtC; PFAM: inner-membrane translocator; KEGG: bja:blr0969 ABC transporter permease protein; urea ABC transporter permease 1527973..1529124 Rhodopseudomonas palustris TIE-1 6409102 YP_001990461.1 CDS Rpal_1446 NC_011004.1 1529135 1529890 D TIGRFAM: urea ABC transporter ATP-binding protein UrtD; PFAM: ABC transporter; KEGG: bja:blr0970 ABC transporter ATP-binding protein; urea ABC transporter ATP-binding protein 1529135..1529890 Rhodopseudomonas palustris TIE-1 6409103 YP_001990462.1 CDS Rpal_1447 NC_011004.1 1529901 1530590 D KEGG: bbt:BBta_0658 branched-chain amino acid ABC transporter (ATP-binding protein); TIGRFAM: urea ABC transporter ATP-binding protein UrtE; PFAM: ABC transporter; SMART: ATPase AAA; urea ABC transporter ATP-binding protein 1529901..1530590 Rhodopseudomonas palustris TIE-1 6409104 YP_001990463.1 CDS Rpal_1448 NC_011004.1 1530627 1531856 D PFAM: Acetamidase/formamidase; KEGG: bbt:BBta_0659 formamidase (formamide amidohydrolase); formamidase 1530627..1531856 Rhodopseudomonas palustris TIE-1 6409105 YP_001990464.1 CDS Rpal_1449 NC_011004.1 1532094 1532438 D TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: bbt:BBta_0660 formamidase regulatory protein FmdB; FmdB family regulatory protein 1532094..1532438 Rhodopseudomonas palustris TIE-1 6409106 YP_001990465.1 CDS Rpal_1450 NC_011004.1 1532553 1533350 R TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cak:Caul_2743 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase complement(1532553..1533350) Rhodopseudomonas palustris TIE-1 6409107 YP_001990466.1 CDS Rpal_1451 NC_011004.1 1533629 1533952 D hypothetical protein 1533629..1533952 Rhodopseudomonas palustris TIE-1 6409108 YP_001990467.1 CDS Rpal_1452 NC_011004.1 1534213 1536957 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pde:Pden_5102 ATPase, P-type (transporting), HAD superfamily, subfamily IC; ATPase P 1534213..1536957 Rhodopseudomonas palustris TIE-1 6409109 YP_001990468.1 CDS Rpal_1453 NC_011004.1 1537046 1537951 D PFAM: UspA domain protein; KEGG: pla:Plav_3480 UspA domain protein; UspA domain-containing protein 1537046..1537951 Rhodopseudomonas palustris TIE-1 6409110 YP_001990469.1 CDS Rpal_1454 NC_011004.1 1538048 1539643 D PFAM: FAD linked oxidase domain protein; KEGG: mtu:Rv3107c possible alkyldihydroxyacetonephosphate synthase AgrS (alkyl-DHAP synthase) (alkylglycerone-phosphate synthase); FAD linked oxidase domain-containing protein 1538048..1539643 Rhodopseudomonas palustris TIE-1 6409111 YP_001990470.1 CDS Rpal_1455 NC_011004.1 1539615 1540079 R KEGG: bja:blr7780 hypothetical protein; hypothetical protein complement(1539615..1540079) Rhodopseudomonas palustris TIE-1 6409112 YP_001990471.1 CDS Rpal_1456 NC_011004.1 1540311 1540586 D PFAM: protein of unknown function DUF1153; KEGG: nha:Nham_0692 protein of unknown function DUF1153; hypothetical protein 1540311..1540586 Rhodopseudomonas palustris TIE-1 6409113 YP_001990472.1 CDS fliF NC_011004.1 1540786 1542402 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1540786..1542402 Rhodopseudomonas palustris TIE-1 6409114 YP_001990473.1 CDS fliG NC_011004.1 1542409 1543497 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1542409..1543497 Rhodopseudomonas palustris TIE-1 6409115 YP_001990474.1 CDS fliH NC_011004.1 1543497 1544123 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1543497..1544123 Rhodopseudomonas palustris TIE-1 6409116 YP_001990475.1 CDS Rpal_1460 NC_011004.1 1544141 1544488 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1544141..1544488 Rhodopseudomonas palustris TIE-1 6409117 YP_001990476.1 CDS Rpal_1461 NC_011004.1 1544536 1545915 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; SMART: ATPase AAA; KEGG: nha:Nham_0687 two component, sigma54 specific, transcriptional regulator, fis family; Fis family transcriptional regulator 1544536..1545915 Rhodopseudomonas palustris TIE-1 6409118 YP_001990477.1 CDS Rpal_1462 NC_011004.1 1546287 1546442 R KEGG: bbt:BBta_1870 exported protein of unknown function; hypothetical protein complement(1546287..1546442) Rhodopseudomonas palustris TIE-1 6409119 YP_001990478.1 CDS Rpal_1463 NC_011004.1 1546497 1546775 R KEGG: bja:bsl0168 hypothetical protein; hypothetical protein complement(1546497..1546775) Rhodopseudomonas palustris TIE-1 6409120 YP_001990479.1 CDS Rpal_1464 NC_011004.1 1546812 1547081 R KEGG: bja:bsl0170 hypothetical protein; hypothetical protein complement(1546812..1547081) Rhodopseudomonas palustris TIE-1 6409121 YP_001990480.1 CDS Rpal_1465 NC_011004.1 1547310 1548137 D PFAM: transglutaminase domain protein; KEGG: bja:bll5557 hypothetical protein; transglutaminase domain-containing protein 1547310..1548137 Rhodopseudomonas palustris TIE-1 6409122 YP_001990481.1 CDS Rpal_1466 NC_011004.1 1548269 1549378 D KEGG: nha:Nham_0686 exodeoxyribonuclease V; exodeoxyribonuclease V 1548269..1549378 Rhodopseudomonas palustris TIE-1 6409123 YP_001990482.1 CDS Rpal_1467 NC_011004.1 1549468 1550163 R PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bra:BRADO1328 S-adenosyl-L-methionine-dependent methyltransferase; type 11 methyltransferase complement(1549468..1550163) Rhodopseudomonas palustris TIE-1 6409124 YP_001990483.1 CDS Rpal_1468 NC_011004.1 1550446 1550973 D PFAM: Ferritin Dps family protein; KEGG: bra:BRADO1329 DNA-binding stress protein (oxydative damage protectant); ferritin Dps family protein 1550446..1550973 Rhodopseudomonas palustris TIE-1 6409125 YP_001990484.1 CDS Rpal_1469 NC_011004.1 1551233 1551757 R KEGG: bra:BRADO1333 hypothetical protein; hypothetical protein complement(1551233..1551757) Rhodopseudomonas palustris TIE-1 6409126 YP_001990485.1 CDS Rpal_1470 NC_011004.1 1551990 1553183 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1551990..1553183) Rhodopseudomonas palustris TIE-1 6409127 YP_001990486.1 CDS Rpal_1471 NC_011004.1 1553332 1554036 D PFAM: alpha/beta hydrolase fold; Thioesterase; KEGG: bja:bll7370 probable hydrolase; alpha/beta hydrolase fold protein 1553332..1554036 Rhodopseudomonas palustris TIE-1 6409128 YP_001990487.1 CDS Rpal_1472 NC_011004.1 1554194 1554649 D KEGG: nha:Nham_2870 GatB/YqeY; GatB/YqeY 1554194..1554649 Rhodopseudomonas palustris TIE-1 6409129 YP_001990488.1 CDS Rpal_1473 NC_011004.1 1555234 1556082 D KEGG: bja:bll7362 hypothetical protein; hypothetical protein 1555234..1556082 Rhodopseudomonas palustris TIE-1 6409130 YP_001990489.1 CDS Rpal_1474 NC_011004.1 1556196 1556669 R PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bja:blr7360 hypothetical protein; Activator of Hsp90 ATPase 1 family protein complement(1556196..1556669) Rhodopseudomonas palustris TIE-1 6409131 YP_001990490.1 CDS Rpal_1475 NC_011004.1 1556662 1556976 R PFAM: regulatory protein ArsR; KEGG: bja:blr7359 transcriptional regulatory protein; ArsR family transcriptional regulator complement(1556662..1556976) Rhodopseudomonas palustris TIE-1 6409132 YP_001990491.1 CDS Rpal_1476 NC_011004.1 1557105 1557722 D PFAM: lysine exporter; KEGG: bja:bll7356 efflux protein; lysine exporter 1557105..1557722 Rhodopseudomonas palustris TIE-1 6409133 YP_001990492.1 CDS Rpal_1477 NC_011004.1 1557848 1558645 R PFAM: N-formylglutamate amidohydrolase; KEGG: nwi:Nwi_2443 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase complement(1557848..1558645) Rhodopseudomonas palustris TIE-1 6409134 YP_001990493.1 CDS Rpal_1478 NC_011004.1 1558807 1559214 D PFAM: AIG2 family protein; KEGG: bja:bll7352 hypothetical protein; AIG2 family protein 1558807..1559214 Rhodopseudomonas palustris TIE-1 6409135 YP_001990494.1 CDS Rpal_1479 NC_011004.1 1559231 1559473 R hypothetical protein complement(1559231..1559473) Rhodopseudomonas palustris TIE-1 6409136 YP_001990495.1 CDS dnaG NC_011004.1 1559930 1561939 D synthesizes RNA primers at the replication forks; DNA primase 1559930..1561939 Rhodopseudomonas palustris TIE-1 6409137 YP_001990496.1 CDS Rpal_1481 NC_011004.1 1562199 1564295 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 1562199..1564295 Rhodopseudomonas palustris TIE-1 6409138 YP_001990497.1 CDS Rpal_1482 NC_011004.1 1564368 1564646 D KEGG: ccr:CC_2514 hypothetical protein; hypothetical protein 1564368..1564646 Rhodopseudomonas palustris TIE-1 6409139 YP_001990498.1 CDS Rpal_1484 NC_011004.1 1565047 1565370 R TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: azc:AZC_3257 plasmid maintenance system antidote protein; XRE family transcriptional regulator complement(1565047..1565370) Rhodopseudomonas palustris TIE-1 6409141 YP_001990499.1 CDS Rpal_1485 NC_011004.1 1565380 1565670 R PFAM: plasmid maintenance system killer; KEGG: rru:Rru_A2778 plasmid maintenance system killer; plasmid maintenance system killer protein complement(1565380..1565670) Rhodopseudomonas palustris TIE-1 6409142 YP_001990500.1 CDS Rpal_1487 NC_011004.1 1569014 1570777 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: maq:Maqu_3791 diguanylate cyclase; diguanylate cyclase 1569014..1570777 Rhodopseudomonas palustris TIE-1 6409144 YP_001990501.1 CDS Rpal_1488 NC_011004.1 1571029 1571880 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_0442 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1571029..1571880) Rhodopseudomonas palustris TIE-1 6409145 YP_001990502.1 CDS Rpal_1489 NC_011004.1 1572069 1573184 R catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(1572069..1573184) Rhodopseudomonas palustris TIE-1 6409146 YP_001990503.1 CDS Rpal_1490 NC_011004.1 1573482 1573823 D KEGG: reh:H16_A1583 hypothetical protein; hypothetical protein 1573482..1573823 Rhodopseudomonas palustris TIE-1 6409147 YP_001990504.1 CDS Rpal_1491 NC_011004.1 1574095 1574658 D TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bbt:BBta_4318 intracellular proteinase; Pfpi family intracellular protease 1574095..1574658 Rhodopseudomonas palustris TIE-1 6409148 YP_001990505.1 CDS Rpal_1492 NC_011004.1 1574848 1575219 R KEGG: bra:BRADO1363 hypothetical protein; hypothetical protein complement(1574848..1575219) Rhodopseudomonas palustris TIE-1 6409149 YP_001990506.1 CDS Rpal_1493 NC_011004.1 1575446 1576264 D TIGRFAM: lytic murein transglycosylase; KEGG: nha:Nham_2862 lytic murein transglycosylase; lytic murein transglycosylase 1575446..1576264 Rhodopseudomonas palustris TIE-1 6409150 YP_001990507.1 CDS Rpal_1494 NC_011004.1 1576295 1577008 R PFAM: flagellar hook capping protein; KEGG: nha:Nham_0693 flagellar hook capping protein; flagellar hook capping protein complement(1576295..1577008) Rhodopseudomonas palustris TIE-1 6409151 YP_001990508.1 CDS Rpal_1495 NC_011004.1 1577021 1578619 R PFAM: flagellar hook-length control protein; KEGG: bja:blr6996 hypothetical protein; flagellar hook-length control protein complement(1577021..1578619) Rhodopseudomonas palustris TIE-1 6409152 YP_001990509.1 CDS mnmA NC_011004.1 1578920 1580125 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1578920..1580125 Rhodopseudomonas palustris TIE-1 6409153 YP_001990510.1 CDS Rpal_1497 NC_011004.1 1580145 1580783 D PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: bja:bll6994 phosphatidylethanolamine N-methyltransferase; phosphatidylethanolamine N-methyltransferase 1580145..1580783 Rhodopseudomonas palustris TIE-1 6409154 YP_001990511.1 CDS Rpal_1498 NC_011004.1 1580829 1581167 D KEGG: bra:BRADO5892 conserved hypothetical protein; signal peptide; hypothetical protein 1580829..1581167 Rhodopseudomonas palustris TIE-1 6409155 YP_001990512.1 CDS Rpal_1499 NC_011004.1 1581477 1581839 R hypothetical protein complement(1581477..1581839) Rhodopseudomonas palustris TIE-1 6409157 YP_001990513.1 CDS Rpal_1500 NC_011004.1 1581951 1582931 D PFAM: integrase family protein; KEGG: acr:Acry_3449 hypothetical protein; integrase family protein 1581951..1582931 Rhodopseudomonas palustris TIE-1 6409158 YP_001990514.1 CDS Rpal_1501 NC_011004.1 1583161 1584702 D PFAM: RNA methylase; N-6 DNA methylase; KEGG: rba:RB11642 type I restriction enzym, M protein; N-6 DNA methylase 1583161..1584702 Rhodopseudomonas palustris TIE-1 6409159 YP_001990515.1 CDS Rpal_1502 NC_011004.1 1584699 1585880 D PFAM: restriction modification system DNA specificity domain; KEGG: gur:Gura_2097 restriction modification system DNA specificity domain; restriction modification system DNA specificity domain-containing protein 1584699..1585880 Rhodopseudomonas palustris TIE-1 6409160 YP_001990516.1 CDS Rpal_1503 NC_011004.1 1585990 1586523 D KEGG: mmr:Mmar10_0163 hypothetical protein; hypothetical protein 1585990..1586523 Rhodopseudomonas palustris TIE-1 6409161 YP_001990517.1 CDS Rpal_1506 NC_011004.1 1589993 1590229 R PFAM: helix-turn-helix domain protein; KEGG: rle:pRL110239 hypothetical protein; XRE family transcriptional regulator complement(1589993..1590229) Rhodopseudomonas palustris TIE-1 6409163 YP_001990518.1 CDS Rpal_1507 NC_011004.1 1590314 1591204 D hypothetical protein 1590314..1591204 Rhodopseudomonas palustris TIE-1 6409164 YP_001990519.1 CDS Rpal_1508 NC_011004.1 1591305 1591862 D KEGG: bja:blr7722 hypothetical protein; hypothetical protein 1591305..1591862 Rhodopseudomonas palustris TIE-1 6409165 YP_001990520.1 CDS Rpal_1509 NC_011004.1 1591862 1592746 D PFAM: metallophosphoesterase; KEGG: nha:Nham_3779 metallophosphoesterase; metallophosphoesterase 1591862..1592746 Rhodopseudomonas palustris TIE-1 6409166 YP_001990521.1 CDS Rpal_1510 NC_011004.1 1592780 1593634 D KEGG: nha:Nham_3781 ATPase AAA; ATPase AAA 1592780..1593634 Rhodopseudomonas palustris TIE-1 6409167 YP_001990522.1 CDS Rpal_1511 NC_011004.1 1593627 1594304 D PFAM: ATPase AAA; SMART: ATPase AAA; KEGG: nha:Nham_3781 ATPase AAA; ATPase AAA 1593627..1594304 Rhodopseudomonas palustris TIE-1 6409168 YP_001990523.1 CDS Rpal_1514 NC_011004.1 1595621 1596736 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mes:Meso_1173 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1595621..1596736 Rhodopseudomonas palustris TIE-1 6409171 YP_001990524.1 CDS Rpal_1515 NC_011004.1 1597021 1597353 D PFAM: carboxymuconolactone decarboxylase; KEGG: bvi:Bcep1808_4940 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 1597021..1597353 Rhodopseudomonas palustris TIE-1 6409172 YP_001990525.1 CDS Rpal_1516 NC_011004.1 1597583 1598125 D KEGG: azc:AZC_1312 hypothetical protein; hypothetical protein 1597583..1598125 Rhodopseudomonas palustris TIE-1 6409173 YP_001990526.1 CDS Rpal_1517 NC_011004.1 1598526 1600424 D KEGG: bja:blr0257 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 1598526..1600424 Rhodopseudomonas palustris TIE-1 6409174 YP_001990527.1 CDS Rpal_1518 NC_011004.1 1600480 1600911 D PFAM: response regulator receiver; KEGG: aba:Acid345_3714 response regulator receiver protein; response regulator receiver protein 1600480..1600911 Rhodopseudomonas palustris TIE-1 6409175 YP_001990528.1 CDS Rpal_1519 NC_011004.1 1600908 1601594 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: azc:AZC_1361 high similarity to two-component response regulator; LuxR family transcriptional regulator 1600908..1601594 Rhodopseudomonas palustris TIE-1 6409176 YP_001990529.1 CDS Rpal_1520 NC_011004.1 1601971 1602792 D PFAM: alpha/beta hydrolase fold; KEGG: mac:MA0993 chloride peroxidase; alpha/beta hydrolase fold protein 1601971..1602792 Rhodopseudomonas palustris TIE-1 6409177 YP_001990530.1 CDS Rpal_1521 NC_011004.1 1602954 1603475 D PFAM: Ferritin Dps family protein; KEGG: bja:bll0290 hypothetical low temperature-induced protein; ferritin Dps family protein 1602954..1603475 Rhodopseudomonas palustris TIE-1 6409178 YP_001990531.1 CDS Rpal_1522 NC_011004.1 1603490 1604092 D KEGG: bja:bll0289 hypothetical protein; hypothetical protein 1603490..1604092 Rhodopseudomonas palustris TIE-1 6409179 YP_001990532.1 CDS Rpal_1523 NC_011004.1 1604215 1605057 R PFAM: ATP-binding region ATPase domain protein; KEGG: azc:AZC_1344 sensor protein; histidine kinase complement(1604215..1605057) Rhodopseudomonas palustris TIE-1 6409180 YP_001990533.1 CDS Rpal_1524 NC_011004.1 1605203 1606108 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_1314 transcriptional regulator; AraC family transcriptional regulator complement(1605203..1606108) Rhodopseudomonas palustris TIE-1 6409181 YP_001990534.1 CDS Rpal_1525 NC_011004.1 1606239 1607219 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bja:bll0302 RNA polymerase subunit; RNA polymerase sigma-32 subunit RpoH complement(1606239..1607219) Rhodopseudomonas palustris TIE-1 6409182 YP_001990535.1 CDS Rpal_1526 NC_011004.1 1607535 1609511 R KEGG: azc:AZC_1348 oxalate decarboxylase; TIGRFAM: bicupin, oxalate decarboxylase family; PFAM: Cupin domain protein; protein of unknown function DUF1275; cupin; oxalate decarboxylase family bicupin complement(1607535..1609511) Rhodopseudomonas palustris TIE-1 6409183 YP_001990536.1 CDS Rpal_1527 NC_011004.1 1609692 1610135 R PFAM: Camphor resistance CrcB protein; KEGG: bmt:BSUIS_B0810 hypothetical protein; camphor resistance protein CrcB complement(1609692..1610135) Rhodopseudomonas palustris TIE-1 6409184 YP_001990537.1 CDS Rpal_1528 NC_011004.1 1610138 1610539 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(1610138..1610539) Rhodopseudomonas palustris TIE-1 6409185 YP_001990538.1 CDS Rpal_1529 NC_011004.1 1610550 1613702 R PFAM: acriflavin resistance protein; KEGG: bja:blr0277 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(1610550..1613702) Rhodopseudomonas palustris TIE-1 6409186 YP_001990539.1 CDS Rpal_1530 NC_011004.1 1613699 1614874 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:blr0276 hypothetical protein; RND family efflux transporter MFP subunit complement(1613699..1614874) Rhodopseudomonas palustris TIE-1 6409187 YP_001990540.1 CDS Rpal_1531 NC_011004.1 1615272 1617002 D catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase 1615272..1617002 Rhodopseudomonas palustris TIE-1 6409188 YP_001990541.1 CDS Rpal_1532 NC_011004.1 1617248 1619644 D TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: atc:AGR_L_213 hypothetical protein; oxidoreductase alpha (molybdopterin) subunit 1617248..1619644 Rhodopseudomonas palustris TIE-1 6409189 YP_001990542.1 CDS Rpal_1533 NC_011004.1 1619663 1621060 D PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: mex:Mext_1976 cytochrome bd ubiquinol oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I 1619663..1621060 Rhodopseudomonas palustris TIE-1 6409190 YP_001990543.1 CDS Rpal_1534 NC_011004.1 1621057 1622082 D PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: xau:Xaut_1267 cytochrome d ubiquinol oxidase, subunit II; cytochrome bd ubiquinol oxidase subunit II 1621057..1622082 Rhodopseudomonas palustris TIE-1 6409191 YP_001990544.1 CDS Rpal_1535 NC_011004.1 1622166 1622474 D KEGG: mlo:mlr4646 hypothetical protein; hypothetical protein 1622166..1622474 Rhodopseudomonas palustris TIE-1 6409192 YP_001990545.1 CDS Rpal_1536 NC_011004.1 1622590 1622946 D KEGG: bja:blr0274 hypothetical protein; hypothetical protein 1622590..1622946 Rhodopseudomonas palustris TIE-1 6409193 YP_001990546.1 CDS Rpal_1537 NC_011004.1 1623132 1623980 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_2279 transcriptional regulator; AraC family transcriptional regulator 1623132..1623980 Rhodopseudomonas palustris TIE-1 6409194 YP_001990547.1 CDS Rpal_1538 NC_011004.1 1624174 1624872 D PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: mlo:mlr5739 two-component sensor protein; signal transduction histidine kinase 1624174..1624872 Rhodopseudomonas palustris TIE-1 6409195 YP_001990548.1 CDS Rpal_1539 NC_011004.1 1625238 1625468 R KEGG: bra:BRADO7127 conserved hypothetical protein; signal peptide; hypothetical protein complement(1625238..1625468) Rhodopseudomonas palustris TIE-1 6409196 YP_001990549.1 CDS Rpal_1540 NC_011004.1 1625741 1627792 D PFAM: fusaric acid resistance protein conserved region; KEGG: azc:AZC_1359 bacterial membrane protein of unknown function; fusaric acid resistance protein 1625741..1627792 Rhodopseudomonas palustris TIE-1 6409197 YP_001990550.1 CDS Rpal_1541 NC_011004.1 1627806 1628012 D PFAM: protein of unknown function DUF1656; KEGG: azc:AZC_1358 hypothetical protein; hypothetical protein 1627806..1628012 Rhodopseudomonas palustris TIE-1 6409198 YP_001990551.1 CDS Rpal_1542 NC_011004.1 1628009 1628950 D PFAM: secretion protein HlyD family protein; KEGG: azc:AZC_1357 membrane fusion protein; secretion protein HlyD family protein 1628009..1628950 Rhodopseudomonas palustris TIE-1 6409199 YP_001990552.1 CDS Rpal_1543 NC_011004.1 1628986 1629888 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_1345 transcriptional regulator; AraC family transcriptional regulator complement(1628986..1629888) Rhodopseudomonas palustris TIE-1 6409200 YP_001990553.1 CDS Rpal_1544 NC_011004.1 1630069 1635201 D PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: serine/threonine protein kinase; KEGG: azc:AZC_1344 sensor protein; ATP-binding protein 1630069..1635201 Rhodopseudomonas palustris TIE-1 6409201 YP_001990554.1 CDS fumC NC_011004.1 1635331 1636788 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1635331..1636788 Rhodopseudomonas palustris TIE-1 6409202 YP_001990555.1 CDS Rpal_1546 NC_011004.1 1636790 1638070 D PFAM: protein of unknown function DUF1212; KEGG: azc:AZC_1898 hypothetical protein; hypothetical protein 1636790..1638070 Rhodopseudomonas palustris TIE-1 6409203 YP_001990556.1 CDS Rpal_1547 NC_011004.1 1638067 1638468 D KEGG: gbe:GbCGDNIH1_1043 hypothetical protein; hypothetical protein 1638067..1638468 Rhodopseudomonas palustris TIE-1 6409204 YP_001990557.1 CDS Rpal_1548 NC_011004.1 1638465 1639958 D malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 1638465..1639958 Rhodopseudomonas palustris TIE-1 6409205 YP_001990558.1 CDS Rpal_1549 NC_011004.1 1641010 1642047 D PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120687 hypothetical protein; glycosyl hydrolase family protein 1641010..1642047 Rhodopseudomonas palustris TIE-1 6409206 YP_001990559.1 CDS Rpal_1550 NC_011004.1 1642044 1643195 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: xau:Xaut_3575 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1642044..1643195 Rhodopseudomonas palustris TIE-1 6409207 YP_001990560.1 CDS Rpal_1551 NC_011004.1 1643222 1644346 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rha:RHA1_ro08153 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1643222..1644346 Rhodopseudomonas palustris TIE-1 6409208 YP_001990561.1 CDS Rpal_1552 NC_011004.1 1644355 1645530 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: msm:MSMEG_3981 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1644355..1645530 Rhodopseudomonas palustris TIE-1 6409209 YP_001990562.1 CDS Rpal_1553 NC_011004.1 1645543 1647183 D PFAM: AMP-dependent synthetase and ligase; KEGG: nca:Noca_4121 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1645543..1647183 Rhodopseudomonas palustris TIE-1 6409210 YP_001990563.1 CDS Rpal_1554 NC_011004.1 1647176 1650643 D Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 1647176..1650643 Rhodopseudomonas palustris TIE-1 6409211 YP_001990564.1 CDS Rpal_1555 NC_011004.1 1650640 1651494 D PFAM: inner-membrane translocator; KEGG: nca:Noca_4122 inner-membrane translocator; inner-membrane translocator 1650640..1651494 Rhodopseudomonas palustris TIE-1 6409212 YP_001990565.1 CDS Rpal_1556 NC_011004.1 1651491 1652429 D PFAM: inner-membrane translocator; KEGG: nca:Noca_4123 inner-membrane translocator; inner-membrane translocator 1651491..1652429 Rhodopseudomonas palustris TIE-1 6409213 YP_001990566.1 CDS Rpal_1557 NC_011004.1 1652419 1653198 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nca:Noca_4124 ABC transporter; ABC transporter 1652419..1653198 Rhodopseudomonas palustris TIE-1 6409214 YP_001990567.1 CDS Rpal_1558 NC_011004.1 1653195 1653905 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nca:Noca_4125 ABC transporter; ABC transporter 1653195..1653905 Rhodopseudomonas palustris TIE-1 6409215 YP_001990568.1 CDS Rpal_1559 NC_011004.1 1653935 1655095 D PFAM: extracellular ligand-binding receptor; KEGG: nca:Noca_4127 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1653935..1655095 Rhodopseudomonas palustris TIE-1 6409216 YP_001990569.1 CDS Rpal_1560 NC_011004.1 1655152 1655817 D PFAM: regulatory protein TetR; KEGG: cau:Caur_2221 regulatory protein TetR; TetR family transcriptional regulator 1655152..1655817 Rhodopseudomonas palustris TIE-1 6409217 YP_001990570.1 CDS Rpal_1562 NC_011004.1 1656794 1658116 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_7140 secretion protein (HlyD family); HlyD family type I secretion membrane fusion protein complement(1656794..1658116) Rhodopseudomonas palustris TIE-1 6409219 YP_001990571.1 CDS Rpal_1563 NC_011004.1 1658127 1659938 R KEGG: mlo:mll1027 rhizobiocin secretion protein RspD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter; SMART: ATPase AAA; type I secretion system ATPase complement(1658127..1659938) Rhodopseudomonas palustris TIE-1 6409220 YP_001990572.1 CDS Rpal_1564 NC_011004.1 1660415 1668742 D PFAM: Hemolysin-type calcium-binding region; Endonuclease/exonuclease/phosphatase; 5'-nucleotidase; KEGG: syp:SYNPCC7002_G0067 endonuclease/exonuclease/phosphatase family; 5'-nucleotidase 1660415..1668742 Rhodopseudomonas palustris TIE-1 6409221 YP_001990573.1 CDS Rpal_1565 NC_011004.1 1669157 1669957 D PFAM: regulatory protein DeoR; hypothetical protein; KEGG: xcb:XC_0373 glycerol-3-phosphate regulon repressor; DeoR family transcriptional regulator 1669157..1669957 Rhodopseudomonas palustris TIE-1 6409222 YP_001990574.1 CDS Rpal_1566 NC_011004.1 1670106 1675244 D TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; glycerophosphoryl diester phosphodiesterase; KEGG: amr:AM1_3186 hemolysin-type calcium-binding protein; outer membrane adhesin-like protein 1670106..1675244 Rhodopseudomonas palustris TIE-1 6409223 YP_001990575.1 CDS Rpal_1567 NC_011004.1 1675391 1676320 R PFAM: Integrase catalytic region; KEGG: bja:blr2054 transposase; integrase catalytic subunit complement(1675391..1676320) Rhodopseudomonas palustris TIE-1 6409224 YP_001990576.1 CDS Rpal_1569 NC_011004.1 1676675 1677721 R KEGG: swi:Swit_2460 phage integrase family protein; hypothetical protein complement(1676675..1677721) Rhodopseudomonas palustris TIE-1 6409226 YP_001990577.1 CDS Rpal_1570 NC_011004.1 1677684 1678484 R hypothetical protein complement(1677684..1678484) Rhodopseudomonas palustris TIE-1 6409227 YP_001990578.1 CDS Rpal_1571 NC_011004.1 1679823 1680887 D KEGG: eca:ECA1558 sulfate ester transporter periplasmic binding component; sulfate ester transporter periplasmic binding component 1679823..1680887 Rhodopseudomonas palustris TIE-1 6409228 YP_001990579.1 CDS Rpal_1572 NC_011004.1 1680884 1682500 D PFAM: ABC transporter inner membrane protein; KEGG: pfl:PFL_0207 aliphatic sulfonates ABC transporter permease protein; ABC transporter inner membrane protein 1680884..1682500 Rhodopseudomonas palustris TIE-1 6409229 YP_001990580.1 CDS Rpal_1573 NC_011004.1 1682497 1683306 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pau:PA14_02330 BC-type transporter ATP-binding component; ABC transporter 1682497..1683306 Rhodopseudomonas palustris TIE-1 6409230 YP_001990581.1 CDS Rpal_1574 NC_011004.1 1683348 1685012 D PFAM: sulfatase; KEGG: bja:blr0426 phosphonate monoester hydrolase; sulfatase 1683348..1685012 Rhodopseudomonas palustris TIE-1 6409231 YP_001990582.1 CDS Rpal_1575 NC_011004.1 1685067 1685402 R PFAM: Sulphur oxidation protein SoxZ; KEGG: bbt:BBta_3673 sulfur oxidation protein (SoxZ); sulfur oxidation protein SoxZ complement(1685067..1685402) Rhodopseudomonas palustris TIE-1 6409232 YP_001990583.1 CDS Rpal_1576 NC_011004.1 1685399 1685869 R with SoxZ catalyzes the oxidation of sulfur compounds; sulfur oxidation protein SoxY complement(1685399..1685869) Rhodopseudomonas palustris TIE-1 6409233 YP_001990584.1 CDS Rpal_1577 NC_011004.1 1685869 1687161 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome C sulphide dehydrogenase flavin-binding; KEGG: aeh:Mlg_1267 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit; flavocytochrome c sulfide dehydrogenase complement(1685869..1687161) Rhodopseudomonas palustris TIE-1 6409234 YP_001990585.1 CDS Rpal_1578 NC_011004.1 1687172 1687513 R KEGG: pna:Pnap_1665 cytochrome C, class I; cytochrome C, class I complement(1687172..1687513) Rhodopseudomonas palustris TIE-1 6409235 YP_001990586.1 CDS Rpal_1579 NC_011004.1 1687532 1688731 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pau:PA14_71670 hypothetical protein; hypothetical protein complement(1687532..1688731) Rhodopseudomonas palustris TIE-1 6409236 YP_001990587.1 CDS Rpal_1583 NC_011004.1 1690466 1691281 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO1409 ABC transporter (ATP binding subunit); ABC transporter 1690466..1691281 Rhodopseudomonas palustris TIE-1 6409240 YP_001990588.1 CDS Rpal_1584 NC_011004.1 1691278 1692144 D PFAM: ABC transporter inner membrane protein; KEGG: ppg:PputGB1_0191 ABC transporter inner membrane protein; ABC transporter inner membrane protein 1691278..1692144 Rhodopseudomonas palustris TIE-1 6409241 YP_001990589.1 CDS Rpal_1585 NC_011004.1 1692141 1693703 D PFAM: AMP-dependent synthetase and ligase; KEGG: bmu:Bmul_0738 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1692141..1693703 Rhodopseudomonas palustris TIE-1 6409242 YP_001990590.1 CDS Rpal_1586 NC_011004.1 1693816 1694811 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: bur:Bcep18194_C6742 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 1693816..1694811 Rhodopseudomonas palustris TIE-1 6409243 YP_001990591.1 CDS Rpal_1587 NC_011004.1 1695225 1697048 R catalyzes the hydrolysis of allophanate; allophanate hydrolase complement(1695225..1697048) Rhodopseudomonas palustris TIE-1 6409244 YP_001990592.1 CDS Rpal_1588 NC_011004.1 1697048 1700596 R TIGRFAM: urea amidolyase related protein; urea carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rle:pRL90293 UreA amidolyase; urea carboxylase complement(1697048..1700596) Rhodopseudomonas palustris TIE-1 6409245 YP_001990593.1 CDS Rpal_1589 NC_011004.1 1700599 1701234 R TIGRFAM: urea carboxylase-associated protein 1; KEGG: rle:pRL90292 hypothetical protein; urea carboxylase-associated protein 1 complement(1700599..1701234) Rhodopseudomonas palustris TIE-1 6409246 YP_001990594.1 CDS Rpal_1590 NC_011004.1 1701237 1702076 R TIGRFAM: urea carboxylase-associated protein 2; KEGG: xau:Xaut_1224 hypothetical protein; urea carboxylase-associated protein 2 complement(1701237..1702076) Rhodopseudomonas palustris TIE-1 6409247 YP_001990595.1 CDS Rpal_1591 NC_011004.1 1702115 1702906 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: azc:AZC_4399 ABC transporter ATP-binding protein; ABC transporter complement(1702115..1702906) Rhodopseudomonas palustris TIE-1 6409248 YP_001990596.1 CDS Rpal_1592 NC_011004.1 1702903 1703721 R PFAM: ABC transporter inner membrane protein; KEGG: xau:Xaut_1226 ABC transporter inner membrane protein; ABC transporter inner membrane protein complement(1702903..1703721) Rhodopseudomonas palustris TIE-1 6409249 YP_001990597.1 CDS Rpal_1593 NC_011004.1 1703755 1704825 R TIGRFAM: ABC transporter periplasmic binding protein, urea carboxylase region; PFAM: NLPA lipoprotein; KEGG: xau:Xaut_1227 NlpA lipoprotein; urea ABC transporter periplasmic protein complement(1703755..1704825) Rhodopseudomonas palustris TIE-1 6409250 YP_001990598.1 CDS Rpal_1594 NC_011004.1 1705199 1705990 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB4711 probable enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase complement(1705199..1705990) Rhodopseudomonas palustris TIE-1 6409251 YP_001990599.1 CDS Rpal_1595 NC_011004.1 1706111 1707670 D PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_5827 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1706111..1707670 Rhodopseudomonas palustris TIE-1 6409252 YP_001990600.1 CDS Rpal_1596 NC_011004.1 1707827 1708765 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: mag:amb2598 transcriptional regulator; IclR family transcriptional regulator complement(1707827..1708765) Rhodopseudomonas palustris TIE-1 6409253 YP_001990601.1 CDS Rpal_1597 NC_011004.1 1708885 1709745 D PFAM: MaoC domain protein dehydratase; KEGG: bbr:BB4767 (R)-specific enoyl-CoA hydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase 1708885..1709745 Rhodopseudomonas palustris TIE-1 6409254 YP_001990602.1 CDS Rpal_1598 NC_011004.1 1709871 1711115 D PFAM: extracellular ligand-binding receptor; KEGG: xau:Xaut_1620 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1709871..1711115 Rhodopseudomonas palustris TIE-1 6409255 YP_001990603.1 CDS Rpal_1599 NC_011004.1 1711123 1711842 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: tle:Tlet_1122 ABC transporter; ABC transporter 1711123..1711842 Rhodopseudomonas palustris TIE-1 6409256 YP_001990604.1 CDS Rpal_1600 NC_011004.1 1711835 1712539 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: azc:AZC_2113 ABC transporter ATP-binding protein; ABC transporter 1711835..1712539 Rhodopseudomonas palustris TIE-1 6409257 YP_001990605.1 CDS Rpal_1601 NC_011004.1 1712553 1713416 D PFAM: inner-membrane translocator; KEGG: bxe:Bxe_C0862 ABC branched chain amino acid family transporter inner membrane subunit; branched-chain amino acid ABC transporter inner membrane protein 1712553..1713416 Rhodopseudomonas palustris TIE-1 6409258 YP_001990606.1 CDS Rpal_1602 NC_011004.1 1713413 1714423 D PFAM: inner-membrane translocator; KEGG: xau:Xaut_1500 inner-membrane translocator; inner-membrane translocator 1713413..1714423 Rhodopseudomonas palustris TIE-1 6409259 YP_001990607.1 CDS Rpal_1603 NC_011004.1 1714450 1717608 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: bbt:BBta_p0061 outer membrane copper (silver) and drug transport protein (RND family); CzcA family heavy metal efflux pump complement(1714450..1717608) Rhodopseudomonas palustris TIE-1 6409260 YP_001990608.1 CDS Rpal_1604 NC_011004.1 1717605 1718999 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_3427 cation efflux system protein CusB precursor; RND family efflux transporter MFP subunit complement(1717605..1718999) Rhodopseudomonas palustris TIE-1 6409261 YP_001990609.1 CDS Rpal_1605 NC_011004.1 1719087 1719482 R KEGG: bbt:BBta_3428 exported protein of unknown function; hypothetical protein complement(1719087..1719482) Rhodopseudomonas palustris TIE-1 6409262 YP_001990610.1 CDS Rpal_1606 NC_011004.1 1719579 1719989 R KEGG: bbt:BBta_3429 exported protein of unknown function; hypothetical protein complement(1719579..1719989) Rhodopseudomonas palustris TIE-1 6409263 YP_001990611.1 CDS Rpal_1607 NC_011004.1 1720533 1721477 D KEGG: mag:amb1850 SRPI protein; SRPI protein 1720533..1721477 Rhodopseudomonas palustris TIE-1 6409264 YP_001990612.1 CDS Rpal_1608 NC_011004.1 1721464 1723437 D TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: mag:amb1849 probable cysteine desulfurase 1; SufS subfamily cysteine desulfurase 1721464..1723437 Rhodopseudomonas palustris TIE-1 6409265 YP_001990613.1 CDS Rpal_1609 NC_011004.1 1723602 1724549 D KEGG: scl:sce4640 hypothetical protein; Serine O-acetyltransferase 1723602..1724549 Rhodopseudomonas palustris TIE-1 6409266 YP_001990614.1 CDS metN NC_011004.1 1724739 1725845 D part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 1724739..1725845 Rhodopseudomonas palustris TIE-1 6409267 YP_001990615.1 CDS Rpal_1611 NC_011004.1 1725835 1726503 D PFAM: ABC transporter inner membrane protein; KEGG: azc:AZC_3692 ABC transporter permease protein; ABC transporter inner membrane protein 1725835..1726503 Rhodopseudomonas palustris TIE-1 6409268 YP_001990616.1 CDS Rpal_1612 NC_011004.1 1726532 1727305 D TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bra:BRADO4285 D-methionine ABC transporter protein, periplasmic binding protein; lipoprotein 1726532..1727305 Rhodopseudomonas palustris TIE-1 6409269 YP_001990617.1 CDS Rpal_1613 NC_011004.1 1727661 1728998 R KEGG: azo:azo2395 phenylacetate--CoA ligase; phenylacetate--CoA ligase complement(1727661..1728998) Rhodopseudomonas palustris TIE-1 6409270 YP_001990618.1 CDS Rpal_1614 NC_011004.1 1729094 1729879 R PFAM: NLPA lipoprotein; KEGG: rru:Rru_A0791 NlpA lipoprotein; NLPA lipoprotein complement(1729094..1729879) Rhodopseudomonas palustris TIE-1 6409271 YP_001990619.1 CDS Rpal_1615 NC_011004.1 1730127 1730318 R KEGG: bbt:BBta_2219 hypothetical protein; hypothetical protein complement(1730127..1730318) Rhodopseudomonas palustris TIE-1 6409272 YP_001990620.1 CDS Rpal_1616 NC_011004.1 1731010 1731843 D PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: mca:MCA1828 dinitrogenase reductase ADP-ribosyltransferase-like protein; NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase 1731010..1731843 Rhodopseudomonas palustris TIE-1 6409273 YP_001990621.1 CDS Rpal_1617 NC_011004.1 1731952 1732482 R KEGG: mma:MM_2842 5-nitroimidazole antibiotic resistance protein; 5-nitroimidazole antibiotic resistance protein complement(1731952..1732482) Rhodopseudomonas palustris TIE-1 6409274 YP_001990622.1 CDS Rpal_1618 NC_011004.1 1732540 1733130 R KEGG: rru:Rru_A1390 hypothetical protein; hypothetical protein complement(1732540..1733130) Rhodopseudomonas palustris TIE-1 6409275 YP_001990623.1 CDS Rpal_1619 NC_011004.1 1733127 1733819 R TIGRFAM: Fe-only nitrogenase accessory protein AnfO; PFAM: Nitrogenase iron-iron accessory protein AnfO; KEGG: rru:Rru_A1391 hypothetical protein; Fe-only nitrogenase accessory protein AnfO complement(1733127..1733819) Rhodopseudomonas palustris TIE-1 6409276 YP_001990624.1 CDS Rpal_1620 NC_011004.1 1733902 1735287 R KEGG: rru:Rru_A1392 nitrogenase; TIGRFAM: Fe-only nitrogenase, beta subunit; PFAM: oxidoreductase/nitrogenase component 1; Fe-only nitrogenase subunit beta complement(1733902..1735287) Rhodopseudomonas palustris TIE-1 6409277 YP_001990625.1 CDS Rpal_1621 NC_011004.1 1735301 1735741 R KEGG: rru:Rru_A1393 nitrogenase; TIGRFAM: Fe-only nitrogenase, delta subunit; PFAM: Vanadium/alternative nitrogenase delta subunit; Fe-only nitrogenase subunit delta complement(1735301..1735741) Rhodopseudomonas palustris TIE-1 6409278 YP_001990626.1 CDS Rpal_1622 NC_011004.1 1735753 1737321 R KEGG: rru:Rru_A1394 nitrogenase iron-iron protein, alpha chain; TIGRFAM: nitrogenase alpha chain; nitrogenase component I, alpha chain; nitrogenase iron-iron protein, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase alpha chain complement(1735753..1737321) Rhodopseudomonas palustris TIE-1 6409279 YP_001990627.1 CDS nifH NC_011004.1 1737371 1738198 R nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; alternative NifH, may be molybdenum-independent; nitrogenase reductase complement(1737371..1738198) Rhodopseudomonas palustris TIE-1 6409280 YP_001990628.1 CDS Rpal_1624 NC_011004.1 1738722 1740407 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase AAA; SMART: ATPase AAA; KEGG: rru:Rru_A1388 transcriptional regulator, NifA subfamily, fis family; Fis family transcriptional regulator complement(1738722..1740407) Rhodopseudomonas palustris TIE-1 6409281 YP_001990629.1 CDS Rpal_1625 NC_011004.1 1740411 1740935 R KEGG: bja:blr8159 hypothetical protein; hypothetical protein complement(1740411..1740935) Rhodopseudomonas palustris TIE-1 6409282 YP_001990630.1 CDS Rpal_1626 NC_011004.1 1741118 1741939 R PFAM: aspartate/glutamate/uridylate kinase; KEGG: nha:Nham_2954 aspartate/glutamate/uridylate kinase; aspartate/glutamate/uridylate kinase complement(1741118..1741939) Rhodopseudomonas palustris TIE-1 6409283 YP_001990631.1 CDS Rpal_1627 NC_011004.1 1741949 1742761 R PFAM: aspartate/glutamate/uridylate kinase; KEGG: azc:AZC_3023 aspartate/glutamate/uridylate kinase; aspartate/glutamate/uridylate kinase complement(1741949..1742761) Rhodopseudomonas palustris TIE-1 6409284 YP_001990632.1 CDS Rpal_1628 NC_011004.1 1743053 1743868 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: fal:FRAAL6172 GntR-family transcription regulator; GntR family transcriptional regulator complement(1743053..1743868) Rhodopseudomonas palustris TIE-1 6409285 YP_001990633.1 CDS Rpal_1629 NC_011004.1 1744056 1744196 D hypothetical protein 1744056..1744196 Rhodopseudomonas palustris TIE-1 6409286 YP_001990634.1 CDS Rpal_1630 NC_011004.1 1744243 1745244 D KEGG: vei:Veis_3425 oligopeptide/dipeptide ABC transporter ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 1744243..1745244 Rhodopseudomonas palustris TIE-1 6409287 YP_001990635.1 CDS Rpal_1631 NC_011004.1 1745241 1746290 D KEGG: vei:Veis_3426 oligopeptide/dipeptide ABC transporter ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 1745241..1746290 Rhodopseudomonas palustris TIE-1 6409288 YP_001990636.1 CDS Rpal_1632 NC_011004.1 1746281 1747834 D PFAM: extracellular solute-binding protein family 5; KEGG: vei:Veis_3427 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 1746281..1747834 Rhodopseudomonas palustris TIE-1 6409289 YP_001990637.1 CDS Rpal_1633 NC_011004.1 1747887 1748843 D PFAM: ABC transporter inner membrane protein; KEGG: vei:Veis_3428 ABC transporter inner membrane protein; ABC transporter inner membrane protein 1747887..1748843 Rhodopseudomonas palustris TIE-1 6409290 YP_001990638.1 CDS Rpal_1634 NC_011004.1 1748840 1749724 D PFAM: ABC transporter inner membrane protein; KEGG: vei:Veis_3435 ABC transporter inner membrane protein; ABC transporter inner membrane protein 1748840..1749724 Rhodopseudomonas palustris TIE-1 6409291 YP_001990639.1 CDS Rpal_1635 NC_011004.1 1749750 1751465 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 1749750..1751465 Rhodopseudomonas palustris TIE-1 6409292 YP_001990640.1 CDS Rpal_1636 NC_011004.1 1751529 1754840 D PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: bja:bll7292 probable pyruvate carboxylase; carbamoyl-phosphate synthase L chain ATP-binding 1751529..1754840 Rhodopseudomonas palustris TIE-1 6409293 YP_001990641.1 CDS Rpal_1637 NC_011004.1 1754878 1755831 D KEGG: bja:blr2724 hypothetical protein; hypothetical protein 1754878..1755831 Rhodopseudomonas palustris TIE-1 6409294 YP_001990642.1 CDS Rpal_1638 NC_011004.1 1755838 1755993 R KEGG: bra:BRADO1773 conserved hypothetical protein; signal peptide; hypothetical protein complement(1755838..1755993) Rhodopseudomonas palustris TIE-1 6409295 YP_001990643.1 CDS Rpal_1639 NC_011004.1 1756131 1756739 D PFAM: cytochrome C oxidase subunit III; KEGG: bbt:BBta_2086 NorE protein involved in nitric oxide reduction; cytochrome C oxidase subunit III 1756131..1756739 Rhodopseudomonas palustris TIE-1 6409296 YP_001990644.1 CDS Rpal_1640 NC_011004.1 1756744 1757013 D KEGG: dsh:Dshi_3188 nitric oxide reductase F protein; hypothetical protein 1756744..1757013 Rhodopseudomonas palustris TIE-1 6409297 YP_001990645.1 CDS Rpal_1641 NC_011004.1 1757124 1757576 D KEGG: bov:BOV_A0224 nitric-oxide reductase, small subunit; nitric-oxide reductase, small subunit 1757124..1757576 Rhodopseudomonas palustris TIE-1 6409298 YP_001990646.1 CDS Rpal_1642 NC_011004.1 1757614 1758960 D PFAM: cytochrome C oxidase subunit I; KEGG: bja:blr3215 nitric oxide reductase subunit B; nitric-oxide reductase 1757614..1758960 Rhodopseudomonas palustris TIE-1 6409299 YP_001990647.1 CDS Rpal_1643 NC_011004.1 1759017 1759829 D PFAM: ATPase AAA; CbbQ/NirQ/NorQ domain protein; KEGG: bja:blr3216 NorQ protein; ATPase AAA 1759017..1759829 Rhodopseudomonas palustris TIE-1 6409300 YP_001990648.1 CDS Rpal_1644 NC_011004.1 1759970 1761880 D PFAM: von Willebrand factor type A; KEGG: bja:blr3217 NorD protein; von Willebrand factor type A 1759970..1761880 Rhodopseudomonas palustris TIE-1 6409301 YP_001990649.1 CDS Rpal_1645 NC_011004.1 1761892 1762764 R KEGG: sfr:Sfri_0063 hypothetical protein; hypothetical protein complement(1761892..1762764) Rhodopseudomonas palustris TIE-1 6409302 YP_001990650.1 CDS Rpal_1646 NC_011004.1 1762884 1763900 R KEGG: azc:AZC_2320 hypothetical protein; hypothetical protein complement(1762884..1763900) Rhodopseudomonas palustris TIE-1 6409303 YP_001990651.1 CDS Rpal_1647 NC_011004.1 1763992 1765200 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: oan:Oant_4174 cobalamin synthesis protein P47K; cobalamin synthesis protein P47K complement(1763992..1765200) Rhodopseudomonas palustris TIE-1 6409304 YP_001990652.1 CDS Rpal_1648 NC_011004.1 1765529 1767385 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1765529..1767385 Rhodopseudomonas palustris TIE-1 6409305 YP_001990653.1 CDS Rpal_1649 NC_011004.1 1767511 1768314 R PFAM: peptidase C26; KEGG: bra:BRADO4209 gamma-glutamyl hydrolase family protein; peptidase C26 complement(1767511..1768314) Rhodopseudomonas palustris TIE-1 6409306 YP_001990654.1 CDS Rpal_1650 NC_011004.1 1768560 1770374 D PFAM: CBS domain containing protein; Chloride channel core; KEGG: ret:RHE_CH02492 chloride channel protein; chloride channel protein 1768560..1770374 Rhodopseudomonas palustris TIE-1 6409307 YP_001990655.1 CDS Rpal_1651 NC_011004.1 1770388 1772193 R catalyzes the hydrolysis of allophanate; allophanate hydrolase complement(1770388..1772193) Rhodopseudomonas palustris TIE-1 6409308 YP_001990656.1 CDS Rpal_1652 NC_011004.1 1772190 1772936 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bbt:BBta_0723 transcriptional regulatory protein, GntR family; GntR family transcriptional regulator complement(1772190..1772936) Rhodopseudomonas palustris TIE-1 6409309 YP_001990657.1 CDS Rpal_1653 NC_011004.1 1772933 1773328 R KEGG: bra:BRADO6817 hypothetical protein; hypothetical protein complement(1772933..1773328) Rhodopseudomonas palustris TIE-1 6409310 YP_001990658.1 CDS Rpal_1654 NC_011004.1 1773331 1774707 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(1773331..1774707) Rhodopseudomonas palustris TIE-1 6409311 YP_001990659.1 CDS Rpal_1655 NC_011004.1 1774736 1774927 R KEGG: bbt:BBta_0720 hypothetical protein; hypothetical protein complement(1774736..1774927) Rhodopseudomonas palustris TIE-1 6409312 YP_001990660.1 CDS Rpal_1656 NC_011004.1 1775020 1776861 R PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_0719 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; ABC transporter complement(1775020..1776861) Rhodopseudomonas palustris TIE-1 6409313 YP_001990661.1 CDS Rpal_1658 NC_011004.1 1777017 1777928 R PFAM: ABC transporter inner membrane protein; KEGG: bja:blr1038 ABC transporter permease protein; ABC transporter inner membrane protein complement(1777017..1777928) Rhodopseudomonas palustris TIE-1 6409315 YP_001990662.1 CDS Rpal_1659 NC_011004.1 1777939 1778952 R PFAM: ABC transporter inner membrane protein; KEGG: bja:blr1037 ABC transporter permease protein; ABC transporter inner membrane protein complement(1777939..1778952) Rhodopseudomonas palustris TIE-1 6409316 YP_001990663.1 CDS Rpal_1660 NC_011004.1 1779123 1780742 R PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_0716 dipeptide/oligopeptide/nickel ABC transporter substrate-binding protein; family 5 extracellular solute-binding protein complement(1779123..1780742) Rhodopseudomonas palustris TIE-1 6409317 YP_001990664.1 CDS Rpal_1661 NC_011004.1 1781121 1781585 R hypothetical protein complement(1781121..1781585) Rhodopseudomonas palustris TIE-1 6409318 YP_001990665.1 CDS Rpal_1662 NC_011004.1 1781839 1782078 R hypothetical protein complement(1781839..1782078) Rhodopseudomonas palustris TIE-1 6409319 YP_001990666.1 CDS Rpal_1663 NC_011004.1 1782403 1783410 D PFAM: extracellular solute-binding protein family 1; KEGG: bra:BRADO5362 conserved hypothetical protein; ABC-type Fe3+ transport system; exported protein; iron ABC transporter substrate-binding protein 1782403..1783410 Rhodopseudomonas palustris TIE-1 6409320 YP_001990667.1 CDS Rpal_1664 NC_011004.1 1783458 1784273 D PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_5853 permease protein; ABC transporter inner membrane protein 1783458..1784273 Rhodopseudomonas palustris TIE-1 6409321 YP_001990668.1 CDS Rpal_1665 NC_011004.1 1784278 1785063 D PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO5360 molybdenum transport system permease protein ModB; exported protein; ABC transporter inner membrane protein 1784278..1785063 Rhodopseudomonas palustris TIE-1 6409322 YP_001990669.1 CDS Rpal_1666 NC_011004.1 1785060 1786121 D PFAM: ABC transporter; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: bbt:BBta_5851 ATP binding protein (ABC superfamily, atp_bind); ABC transporter 1785060..1786121 Rhodopseudomonas palustris TIE-1 6409323 YP_001990670.1 CDS Rpal_1667 NC_011004.1 1786121 1786975 D PFAM: metallophosphoesterase; KEGG: bra:BRADO5358 hypothetical protein; metallophosphoesterase 1786121..1786975 Rhodopseudomonas palustris TIE-1 6409324 YP_001990671.1 CDS Rpal_1668 NC_011004.1 1787079 1787474 D PFAM: response regulator receiver; KEGG: mlo:mll2300 probable response regulator; response regulator receiver protein 1787079..1787474 Rhodopseudomonas palustris TIE-1 6409325 YP_001990672.1 CDS Rpal_1669 NC_011004.1 1787605 1788450 D KEGG: bja:blr6127 hypothetical protein; hypothetical protein 1787605..1788450 Rhodopseudomonas palustris TIE-1 6409326 YP_001990673.1 CDS Rpal_1670 NC_011004.1 1788461 1789696 R PFAM: FAD dependent oxidoreductase; KEGG: rle:RL1363 oxidoreductase; FAD dependent oxidoreductase complement(1788461..1789696) Rhodopseudomonas palustris TIE-1 6409327 YP_001990674.1 CDS Rpal_1671 NC_011004.1 1790046 1791698 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 1790046..1791698 Rhodopseudomonas palustris TIE-1 6409328 YP_001990675.1 CDS Rpal_1672 NC_011004.1 1791876 1792568 D PFAM: NnrUfamily protein; KEGG: sil:SPO1134 NnrU family protein; NnrU family protein 1791876..1792568 Rhodopseudomonas palustris TIE-1 6409329 YP_001990676.1 CDS Rpal_1673 NC_011004.1 1792785 1794011 D PFAM: NnrS family protein; KEGG: bbt:BBta_6821 membrane protein, NnrS-like protein; NnrS family protein 1792785..1794011 Rhodopseudomonas palustris TIE-1 6409330 YP_001990677.1 CDS Rpal_1674 NC_011004.1 1794050 1794298 D KEGG: ace:Acel_0511 hypothetical protein; hypothetical protein 1794050..1794298 Rhodopseudomonas palustris TIE-1 6409331 YP_001990678.1 CDS Rpal_1675 NC_011004.1 1794302 1795504 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr2779 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F complement(1794302..1795504) Rhodopseudomonas palustris TIE-1 6409332 YP_001990679.1 CDS Rpal_1676 NC_011004.1 1795639 1796325 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bbt:BBta_3079 two-component transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(1795639..1796325) Rhodopseudomonas palustris TIE-1 6409333 YP_001990680.1 CDS Rpal_1677 NC_011004.1 1796330 1798642 R PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: bbt:BBta_3080 bacteriophytochrome; GAF sensor signal transduction histidine kinase complement(1796330..1798642) Rhodopseudomonas palustris TIE-1 6409334 YP_001990681.1 CDS Rpal_1678 NC_011004.1 1798988 1799143 D PFAM: antenna complex alpha/beta subunit; KEGG: bbt:BBta_3081 light harvesting protein B-800-850; antenna complex alpha/beta subunit 1798988..1799143 Rhodopseudomonas palustris TIE-1 6409335 YP_001990682.1 CDS Rpal_1679 NC_011004.1 1799156 1799335 D PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1408 antenna complex, alpha/beta subunit; antenna complex alpha/beta subunit 1799156..1799335 Rhodopseudomonas palustris TIE-1 6409336 YP_001990683.1 CDS Rpal_1680 NC_011004.1 1799522 1800958 D PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: bbt:BBta_3083 PucC, chlorophyll major facilitator superfamily (MFS) exporter; PUCC protein 1799522..1800958 Rhodopseudomonas palustris TIE-1 6409337 YP_001990684.1 CDS Rpal_1681 NC_011004.1 1800977 1801627 D KEGG: bbt:BBta_3084 hypothetical protein; hypothetical protein 1800977..1801627 Rhodopseudomonas palustris TIE-1 6409338 YP_001990685.1 CDS Rpal_1682 NC_011004.1 1801643 1801936 D KEGG: nve:NEMVE_v1g94016 predicted protein Pfam: Extensin_2 PROSITE: LEU_RICH PRO_RICH; hypothetical protein 1801643..1801936 Rhodopseudomonas palustris TIE-1 6409339 YP_001990686.1 CDS Rpal_1683 NC_011004.1 1802077 1803618 D PFAM: FAD dependent oxidoreductase; KEGG: bbt:BBta_0651 flavin-containing monooxygenase; FAD dependent oxidoreductase 1802077..1803618 Rhodopseudomonas palustris TIE-1 6409340 YP_001990687.1 CDS Rpal_1684 NC_011004.1 1803968 1805167 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:blr1515 RND multidrug efflux membrane permease; RND family efflux transporter MFP subunit 1803968..1805167 Rhodopseudomonas palustris TIE-1 6409341 YP_001990688.1 CDS Rpal_1685 NC_011004.1 1805178 1808345 D TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bja:blr1516 RND multidrug efflux transporter; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 1805178..1808345 Rhodopseudomonas palustris TIE-1 6409342 YP_001990689.1 CDS Rpal_1686 NC_011004.1 1808483 1808935 D KEGG: bra:BRADO6559 hypothetical protein; hypothetical protein 1808483..1808935 Rhodopseudomonas palustris TIE-1 6409343 YP_001990690.1 CDS Rpal_1687 NC_011004.1 1809192 1809641 R PFAM: conserved hypothetical protein; KEGG: bra:BRADO4339 conserved hypothetical protein; ribonucleotide reductase; hypothetical protein complement(1809192..1809641) Rhodopseudomonas palustris TIE-1 6409344 YP_001990691.1 CDS Rpal_1688 NC_011004.1 1809756 1810985 R PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: rru:Rru_A0937 coenzyme F420 hydrogenase/dehydrogenase beta subunit-like; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain-containing protein complement(1809756..1810985) Rhodopseudomonas palustris TIE-1 6409345 YP_001990692.1 CDS Rpal_1689 NC_011004.1 1811046 1811534 R PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: rde:RD1_4107 hypothetical protein; NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 complement(1811046..1811534) Rhodopseudomonas palustris TIE-1 6409346 YP_001990693.1 CDS Rpal_1690 NC_011004.1 1811534 1813138 R KEGG: hha:Hhal_1627 dienelactone hydrolase; dienelactone hydrolase complement(1811534..1813138) Rhodopseudomonas palustris TIE-1 6409347 YP_001990694.1 CDS Rpal_1691 NC_011004.1 1813138 1814451 R KEGG: nha:Nham_1076 hypothetical protein; hypothetical protein complement(1813138..1814451) Rhodopseudomonas palustris TIE-1 6409348 YP_001990695.1 CDS Rpal_1692 NC_011004.1 1814702 1815682 D KEGG: bra:BRADO1874 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 1814702..1815682 Rhodopseudomonas palustris TIE-1 6409349 YP_001990696.1 CDS Rpal_1693 NC_011004.1 1815688 1816710 D KEGG: bbt:BBta_6449 magnesium-chelatase 38 kDa subunit; TIGRFAM: magnesium chelatase ATPase subunit I; PFAM: magnesium chelatase ChlI subunit; SMART: ATPase AAA; magnesium chelatase ATPase subunit I 1815688..1816710 Rhodopseudomonas palustris TIE-1 6409350 YP_001990697.1 CDS bchD NC_011004.1 1816707 1818479 D involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; part of a complex with BchI, BchD, and BchH; magnesium chelatase subunit D 1816707..1818479 Rhodopseudomonas palustris TIE-1 6409351 YP_001990698.1 CDS Rpal_1695 NC_011004.1 1818522 1819253 R PFAM: type IV pilus assembly PilZ; KEGG: bra:BRADO5217 hypothetical protein; type IV pilus assembly PilZ complement(1818522..1819253) Rhodopseudomonas palustris TIE-1 6409352 YP_001990699.1 CDS hemE NC_011004.1 1819636 1820652 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(1819636..1820652) Rhodopseudomonas palustris TIE-1 6409353 YP_001990700.1 CDS Rpal_1697 NC_011004.1 1820793 1821746 D PFAM: alpha/beta hydrolase fold; KEGG: bbt:BBta_6447 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1820793..1821746 Rhodopseudomonas palustris TIE-1 6409354 YP_001990701.1 CDS Rpal_1698 NC_011004.1 1821757 1822644 D KEGG: bbt:BBta_6446 alpha/beta hydrolase, protoporphyrin IX magnesium chelatase BchO-like protein; TIGRFAM: magnesium chelatase accessory protein; PFAM: alpha/beta hydrolase fold; magnesium chelatase accessory protein 1821757..1822644 Rhodopseudomonas palustris TIE-1 6409355 YP_001990702.1 CDS Rpal_1699 NC_011004.1 1822720 1824255 D TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bra:BRADO1610 phytoene dehydrogenase (phytoene desaturase); phytoene desaturase 1822720..1824255 Rhodopseudomonas palustris TIE-1 6409356 YP_001990703.1 CDS Rpal_1700 NC_011004.1 1824252 1825319 D PFAM: Squalene/phytoene synthase; KEGG: rru:Rru_A0494 squalene/phytoene synthase; squalene/phytoene synthase 1824252..1825319 Rhodopseudomonas palustris TIE-1 6409357 YP_001990704.1 CDS Rpal_1701 NC_011004.1 1825622 1826533 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1825622..1826533 Rhodopseudomonas palustris TIE-1 6409358 YP_001990705.1 CDS Rpal_1702 NC_011004.1 1826582 1827418 R PFAM: UspA domain protein; KEGG: mrd:Mrad2831_0427 UspA domain protein; UspA domain-containing protein complement(1826582..1827418) Rhodopseudomonas palustris TIE-1 6409359 YP_001990706.1 CDS Rpal_1703 NC_011004.1 1827719 1827853 D KEGG: bra:BRADO1612 hypothetical protein; hypothetical protein 1827719..1827853 Rhodopseudomonas palustris TIE-1 6409360 YP_001990707.1 CDS Rpal_1704 NC_011004.1 1827889 1828002 D KEGG: bbt:BBta_6443 hypothetical protein; hypothetical protein 1827889..1828002 Rhodopseudomonas palustris TIE-1 6409361 YP_001990708.1 CDS Rpal_1705 NC_011004.1 1828029 1828982 R PFAM: hydroxyneurosporene synthase; KEGG: bbt:BBta_6442 neurosporene and anhydrorhodovibrin hydratase; hydroxyneurosporene synthase complement(1828029..1828982) Rhodopseudomonas palustris TIE-1 6409362 YP_001990709.1 CDS Rpal_1706 NC_011004.1 1828987 1830546 R TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bra:BRADO1614 hydroxyneurosporene and rhodopin dehydrogenase; phytoene desaturase complement(1828987..1830546) Rhodopseudomonas palustris TIE-1 6409363 YP_001990710.1 CDS Rpal_1707 NC_011004.1 1830668 1831534 D PFAM: polyprenyl synthetase; KEGG: bra:BRADO1615 geranylgeranyl pyrophosphate synthetase (GgpP synthetase) (farnesyltranstransferase); polyprenyl synthetase 1830668..1831534 Rhodopseudomonas palustris TIE-1 6409364 YP_001990711.1 CDS Rpal_1708 NC_011004.1 1831584 1832705 D PFAM: O-methyltransferase family 2; methyltransferase type 12; KEGG: rru:Rru_A2982 O-methyltransferase, family 2; O-methyltransferase family 2 1831584..1832705 Rhodopseudomonas palustris TIE-1 6409365 YP_001990712.1 CDS Rpal_1709 NC_011004.1 1832794 1833732 D TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rru:Rru_A2981 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide; chlorophyll synthesis pathway protein BchC 1832794..1833732 Rhodopseudomonas palustris TIE-1 6409366 YP_001990713.1 CDS Rpal_1710 NC_011004.1 1833732 1834730 D KEGG: mrd:Mrad2831_2818 chlorophyllide reductase iron protein subunit X; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein; chlorophyllide reductase iron protein subunit X 1833732..1834730 Rhodopseudomonas palustris TIE-1 6409367 YP_001990714.1 CDS Rpal_1711 NC_011004.1 1834754 1836340 D TIGRFAM: chlorophyllide reductase subunit Y; KEGG: bbt:BBta_6436 bacteriochlorophyllide reductase subunit 52.5 kDa chain; chlorophyllide reductase subunit Y 1834754..1836340 Rhodopseudomonas palustris TIE-1 6409368 YP_001990715.1 CDS Rpal_1712 NC_011004.1 1836340 1837788 D TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1; protein of unknown function DUF1197; KEGG: bra:BRADO1620 bacteriochlorophyllide reductase Z subunit; chlorophyllide reductase subunit Z 1836340..1837788 Rhodopseudomonas palustris TIE-1 6409369 YP_001990716.1 CDS Rpal_1713 NC_011004.1 1837866 1838090 D hypothetical protein 1837866..1838090 Rhodopseudomonas palustris TIE-1 6409370 YP_001990717.1 CDS Rpal_1714 NC_011004.1 1838244 1838441 D PFAM: antenna complex alpha/beta subunit; KEGG: bbt:BBta_6433 light harvesting 1 beta subunit; antenna complex alpha/beta subunit 1838244..1838441 Rhodopseudomonas palustris TIE-1 6409371 YP_001990718.1 CDS Rpal_1715 NC_011004.1 1838457 1838648 D PFAM: antenna complex alpha/beta subunit; KEGG: bra:BRADO1623 light harvesting 1 alpha subunit; antenna complex alpha/beta subunit 1838457..1838648 Rhodopseudomonas palustris TIE-1 6409372 YP_001990719.1 CDS Rpal_1716 NC_011004.1 1838780 1839613 D TIGRFAM: photosynthetic reaction center L subunit; PFAM: photosynthetic reaction centre protein; KEGG: bbt:BBta_6431 photosynthetic reaction center L subunit; photosynthetic reaction center subunit L 1838780..1839613 Rhodopseudomonas palustris TIE-1 6409373 YP_001990720.1 CDS Rpal_1717 NC_011004.1 1839641 1840564 D TIGRFAM: photosynthetic reaction center, M subunit; PFAM: photosynthetic reaction centre protein; KEGG: bra:BRADO1625 photosynthetic reaction center M protein; photosynthetic reaction center subunit M 1839641..1840564 Rhodopseudomonas palustris TIE-1 6409374 YP_001990721.1 CDS Rpal_1718 NC_011004.1 1840849 1842282 D KEGG: bbt:BBta_6421 transcriptional regulatory protein, HTH fis-type family; TIGRFAM: transcriptional regulator PpsR; PFAM: helix-turn-helix Fis-type; PAS fold domain protein; SMART: PAS domain containing protein; Fis family transcriptional regulator 1840849..1842282 Rhodopseudomonas palustris TIE-1 6409375 YP_001990722.1 CDS Rpal_1719 NC_011004.1 1842275 1843168 D TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: mex:Mext_4820 bacteriochlorophyll/chlorophyll synthetase; bacteriochlorophyll/chlorophyll a synthase 1842275..1843168 Rhodopseudomonas palustris TIE-1 6409376 YP_001990723.1 CDS Rpal_1720 NC_011004.1 1843171 1844487 D PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: bbt:BBta_6423 light harvesting pigment major facilitator family (MFS) transporter Bch2-like protein; PUCC protein 1843171..1844487 Rhodopseudomonas palustris TIE-1 6409377 YP_001990724.1 CDS Rpal_1721 NC_011004.1 1844489 1845694 D TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bra:BRADO1632 geranylgeranyl reductase; geranylgeranyl reductase 1844489..1845694 Rhodopseudomonas palustris TIE-1 6409378 YP_001990725.1 CDS Rpal_1722 NC_011004.1 1845714 1846178 D PFAM: TspO/MBR family protein; KEGG: mpt:Mpe_A2778 tryptophan-rich sensory protein; TspO and MBR-like protein 1845714..1846178 Rhodopseudomonas palustris TIE-1 6409379 YP_001990726.1 CDS Rpal_1723 NC_011004.1 1846215 1846487 D KEGG: bbt:BBta_6425 hypothetical protein; hypothetical protein 1846215..1846487 Rhodopseudomonas palustris TIE-1 6409380 YP_001990727.1 CDS Rpal_1724 NC_011004.1 1846612 1847031 R PFAM: cytochrome C class I; KEGG: bra:BRADO1630 cytochrome C2; cytochrome C class I complement(1846612..1847031) Rhodopseudomonas palustris TIE-1 6409381 YP_001990728.1 CDS Rpal_1725 NC_011004.1 1847353 1848747 D KEGG: bra:BRADO1629 transcriptional regulator PpsR2; fis family; TIGRFAM: transcriptional regulator PpsR; PFAM: helix-turn-helix Fis-type; PAS fold domain protein; SMART: PAS domain containing protein; Fis family transcriptional regulator 1847353..1848747 Rhodopseudomonas palustris TIE-1 6409382 YP_001990729.1 CDS Rpal_1726 NC_011004.1 1848748 1850943 D TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: bbt:BBta_6428 bacteriophytochrome; PAS/PAC sensor protein 1848748..1850943 Rhodopseudomonas palustris TIE-1 6409383 YP_001990730.1 CDS Rpal_1727 NC_011004.1 1851075 1851737 R PFAM: Haem oxygenase-like; KEGG: bra:BRADO1626 heme oxygenase; heme oxygenase complement(1851075..1851737) Rhodopseudomonas palustris TIE-1 6409384 YP_001990731.1 CDS Rpal_1728 NC_011004.1 1851798 1852679 R PFAM: cobalamin B12-binding domain protein; KEGG: bbt:BBta_6420 regulator with a cobalamin (vitamin B12)-binding domain, AerR-like protein; cobalamin B12-binding domain-containing protein complement(1851798..1852679) Rhodopseudomonas palustris TIE-1 6409385 YP_001990732.1 CDS Rpal_1729 NC_011004.1 1852957 1853496 D PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: bra:BRADO1638 2-vinyl bacteriochlorophyllide hydratase; 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD 1852957..1853496 Rhodopseudomonas palustris TIE-1 6409386 YP_001990733.1 CDS Rpal_1730 NC_011004.1 1853493 1854782 D light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit N 1853493..1854782 Rhodopseudomonas palustris TIE-1 6409387 YP_001990734.1 CDS Rpal_1731 NC_011004.1 1854785 1856407 D light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit B 1854785..1856407 Rhodopseudomonas palustris TIE-1 6409388 YP_001990735.1 CDS bchH NC_011004.1 1856382 1860128 D involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; the enzyme from Rhodobacter capsulatus contains an Fe-S cluster; part of a complex with BchI, BchD, and BchH; magnesium chelatase subunit H 1856382..1860128 Rhodopseudomonas palustris TIE-1 6409389 YP_001990736.1 CDS chlL NC_011004.1 1860125 1861063 D light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production; protochlorophyllide reductase iron-sulfur ATP-binding protein 1860125..1861063 Rhodopseudomonas palustris TIE-1 6409390 YP_001990737.1 CDS Rpal_1734 NC_011004.1 1861063 1861764 D catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine; Mg-protoporphyrin IX methyl transferase 1861063..1861764 Rhodopseudomonas palustris TIE-1 6409391 YP_001990738.1 CDS Rpal_1735 NC_011004.1 1861761 1863194 D PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: bra:BRADO1644 photosynthetic complex (LH1) assembly protein LhaA, major facilitator superfamily (MFS) transporter; PUCC protein 1861761..1863194 Rhodopseudomonas palustris TIE-1 6409392 YP_001990739.1 CDS Rpal_1736 NC_011004.1 1863217 1863984 D TIGRFAM: photosynthetic reaction center H subunit; PFAM: PRC-barrel domain protein; Photosynthetic reaction centre H subunit; KEGG: bbt:BBta_6411 reaction center protein H chain (photosynthetic reaction center H subunit); photosynthetic reaction center H subunit 1863217..1863984 Rhodopseudomonas palustris TIE-1 6409393 YP_001990740.1 CDS Rpal_1737 NC_011004.1 1863981 1864643 D KEGG: mex:Mext_4809 photosynthetic complex assembly protein; photosynthetic complex assembly protein 1863981..1864643 Rhodopseudomonas palustris TIE-1 6409394 YP_001990741.1 CDS Rpal_1738 NC_011004.1 1864659 1865165 D TIGRFAM: photosynthetic complex assembly protein; KEGG: bbt:BBta_6409 hypothetical protein; photosynthetic complex assembly protein 1864659..1865165 Rhodopseudomonas palustris TIE-1 6409395 YP_001990742.1 CDS Rpal_1739 NC_011004.1 1865168 1865467 D KEGG: mex:Mext_4807 hypothetical protein; hypothetical protein 1865168..1865467 Rhodopseudomonas palustris TIE-1 6409396 YP_001990743.1 CDS Rpal_1740 NC_011004.1 1865464 1866561 D oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis; magnesium-protoporphyrin IX monomethyl ester cyclase 1865464..1866561 Rhodopseudomonas palustris TIE-1 6409397 YP_001990744.1 CDS Rpal_1741 NC_011004.1 1866575 1867639 D TIGRFAM: photosynthetic complex assembly protein 2; KEGG: bra:BRADO1650 hypothetical protein; photosynthetic complex assembly protein 2 1866575..1867639 Rhodopseudomonas palustris TIE-1 6409398 YP_001990745.1 CDS Rpal_1742 NC_011004.1 1867636 1868847 D catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 1867636..1868847 Rhodopseudomonas palustris TIE-1 6409399 YP_001990746.1 CDS Rpal_1743 NC_011004.1 1869189 1870157 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nha:Nham_3755 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1869189..1870157) Rhodopseudomonas palustris TIE-1 6409400 YP_001990747.1 CDS Rpal_1744 NC_011004.1 1870751 1871440 D PFAM: response regulator receiver; KEGG: mlo:mlr6690 two-component response regulator; response regulator receiver protein 1870751..1871440 Rhodopseudomonas palustris TIE-1 6409401 YP_001990748.1 CDS Rpal_1745 NC_011004.1 1871462 1872298 D PFAM: response regulator receiver; KEGG: mac:MA4377 sensory transduction histidine kinase; response regulator receiver protein 1871462..1872298 Rhodopseudomonas palustris TIE-1 6409402 YP_001990749.1 CDS Rpal_1746 NC_011004.1 1872314 1875025 D KEGG: xac:XAC2492 two-component system sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 1872314..1875025 Rhodopseudomonas palustris TIE-1 6409403 YP_001990750.1 CDS rbcL NC_011004.1 1875226 1876683 D type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase 1875226..1876683 Rhodopseudomonas palustris TIE-1 6409404 YP_001990751.1 CDS Rpal_1748 NC_011004.1 1876697 1877119 D PFAM: ribulose bisphosphate carboxylase small chain; KEGG: bbt:BBta_6396 ribulose bisphosphate carboxylase small chain (RuBisCO small subunit); ribulose-bisphosphate carboxylase 1876697..1877119 Rhodopseudomonas palustris TIE-1 6409405 YP_001990752.1 CDS Rpal_1749 NC_011004.1 1877122 1878048 D KEGG: bra:BRADO1661 CbbX-like protein, containing AAA-ATPase domain; TIGRFAM: CbbX protein; PFAM: ATPase AAA; SMART: ATPase AAA; CbbX protein 1877122..1878048 Rhodopseudomonas palustris TIE-1 6409406 YP_001990753.1 CDS Rpal_1750 NC_011004.1 1878106 1879080 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rle:pRL80074 LysR-family transcriptional regulator; LysR family transcriptional regulator complement(1878106..1879080) Rhodopseudomonas palustris TIE-1 6409407 YP_001990754.1 CDS Rpal_1751 NC_011004.1 1879217 1880266 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mex:Mext_1157 nitrilase; nitrilase 1879217..1880266 Rhodopseudomonas palustris TIE-1 6409408 YP_001990755.1 CDS Rpal_1752 NC_011004.1 1880342 1881658 D KEGG: mpt:Mpe_A3673 UreA/short-chain amide transport system substrate-binding protein; UreA/short-chain amide transport system substrate-binding protein 1880342..1881658 Rhodopseudomonas palustris TIE-1 6409409 YP_001990756.1 CDS Rpal_1753 NC_011004.1 1881667 1882542 D PFAM: inner-membrane translocator; KEGG: nha:Nham_2810 inner-membrane translocator; inner-membrane translocator 1881667..1882542 Rhodopseudomonas palustris TIE-1 6409410 YP_001990757.1 CDS Rpal_1754 NC_011004.1 1882539 1884404 D PFAM: inner-membrane translocator; ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2809 ABC transporter; ABC transporter 1882539..1884404 Rhodopseudomonas palustris TIE-1 6409411 YP_001990758.1 CDS Rpal_1755 NC_011004.1 1884391 1885095 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2808 ABC transporter; ABC transporter 1884391..1885095 Rhodopseudomonas palustris TIE-1 6409412 YP_001990759.1 CDS Rpal_1756 NC_011004.1 1885145 1885927 R PFAM: alpha/beta hydrolase fold; KEGG: bra:BRADO4874 conserved hypothetical protein; alpha/beta hydrolase fold-containing protein; alpha/beta hydrolase fold protein complement(1885145..1885927) Rhodopseudomonas palustris TIE-1 6409413 YP_001990760.1 CDS Rpal_1757 NC_011004.1 1885931 1887226 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(1885931..1887226) Rhodopseudomonas palustris TIE-1 6409414 YP_001990761.1 CDS Rpal_1758 NC_011004.1 1887378 1889495 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: bra:BRADO6986 peptidase S9A family; protease II; oligopeptidase B complement(1887378..1889495) Rhodopseudomonas palustris TIE-1 6409415 YP_001990762.1 CDS Rpal_1759 NC_011004.1 1889626 1890501 D PFAM: dihydrodipicolinate synthetase; KEGG: bja:bll7272 dihydrodipicolinate synthase; dihydrodipicolinate synthetase 1889626..1890501 Rhodopseudomonas palustris TIE-1 6409416 YP_001990763.1 CDS Rpal_1760 NC_011004.1 1890772 1893102 D PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bja:bll7271 carbon monoxide dehydrogenase large chain; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 1890772..1893102 Rhodopseudomonas palustris TIE-1 6409417 YP_001990764.1 CDS Rpal_1761 NC_011004.1 1893180 1893794 D PFAM: LemA family protein; KEGG: bja:bll7267 probable lipoprotein; LemA family protein 1893180..1893794 Rhodopseudomonas palustris TIE-1 6409418 YP_001990765.1 CDS Rpal_1762 NC_011004.1 1893799 1894722 D PFAM: protein of unknown function DUF477; KEGG: bbt:BBta_6688 membrane protein of unknown function; hypothetical protein 1893799..1894722 Rhodopseudomonas palustris TIE-1 6409419 YP_001990766.1 CDS Rpal_1763 NC_011004.1 1894736 1895233 D PFAM: protein of unknown function DUF477; KEGG: nha:Nham_3400 protein of unknown function DUF477; hypothetical protein 1894736..1895233 Rhodopseudomonas palustris TIE-1 6409420 YP_001990767.1 CDS Rpal_1764 NC_011004.1 1895315 1895926 R PFAM: glutathione S-transferase domain; KEGG: pla:Plav_3102 glutathione S-transferase domain; glutathione S-transferase domain-containing protein complement(1895315..1895926) Rhodopseudomonas palustris TIE-1 6409421 YP_001990768.1 CDS Rpal_1765 NC_011004.1 1896135 1897106 D KEGG: bja:bll7264 hypothetical protein; hypothetical protein 1896135..1897106 Rhodopseudomonas palustris TIE-1 6409422 YP_001990769.1 CDS Rpal_1766 NC_011004.1 1897263 1898036 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding protein; KEGG: bja:blr3195 ferredoxin NADP+ reductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(1897263..1898036) Rhodopseudomonas palustris TIE-1 6409423 YP_001990770.1 CDS Rpal_1767 NC_011004.1 1898355 1899563 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbt:BBta_6680 acyl-coenzyme A transferase; L-carnitine dehydratase/bile acid-inducible protein F complement(1898355..1899563) Rhodopseudomonas palustris TIE-1 6409424 YP_001990771.1 CDS Rpal_1768 NC_011004.1 1899728 1902736 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(1899728..1902736) Rhodopseudomonas palustris TIE-1 6409425 YP_001990772.1 CDS Rpal_1769 NC_011004.1 1902881 1903528 D KEGG: nha:Nham_3397 hypothetical protein; hypothetical protein 1902881..1903528 Rhodopseudomonas palustris TIE-1 6409426 YP_001990773.1 CDS Rpal_1770 NC_011004.1 1903553 1905322 R PFAM: ferredoxin; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bra:BRADO1430 ferredoxin:adenylate/guanylate cyclase; adenylate/guanylate cyclase complement(1903553..1905322) Rhodopseudomonas palustris TIE-1 6409427 YP_001990774.1 CDS Rpal_1771 NC_011004.1 1905527 1906636 R PFAM: conserved hypothetical protein; KEGG: bra:BRADO1432 hypothetical protein; hypothetical protein complement(1905527..1906636) Rhodopseudomonas palustris TIE-1 6409428 YP_001990775.1 CDS Rpal_1772 NC_011004.1 1906633 1908102 R PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: nwi:Nwi_3019 YcjX-like protein; hypothetical protein complement(1906633..1908102) Rhodopseudomonas palustris TIE-1 6409429 YP_001990776.1 CDS Rpal_1773 NC_011004.1 1908346 1909041 D PFAM: Hly-III family protein; KEGG: bbt:BBta_6673 hemmolysin III, HlyIII family; Hly-III family protein 1908346..1909041 Rhodopseudomonas palustris TIE-1 6409430 YP_001990777.1 CDS Rpal_1774 NC_011004.1 1909100 1909900 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:bll7251 dehydrogenase; short-chain dehydrogenase/reductase SDR 1909100..1909900 Rhodopseudomonas palustris TIE-1 6409431 YP_001990778.1 CDS Rpal_1775 NC_011004.1 1910098 1910382 D KEGG: nha:Nham_2128 hypothetical protein; hypothetical protein 1910098..1910382 Rhodopseudomonas palustris TIE-1 6409432 YP_001990779.1 CDS Rpal_1776 NC_011004.1 1910386 1911468 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bra:BRADO2796 L-allo-threonine aldolase; aromatic amino acid beta-eliminating lyase/threonine aldolase complement(1910386..1911468) Rhodopseudomonas palustris TIE-1 6409433 YP_001990780.1 CDS rpsD NC_011004.1 1911781 1912398 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(1911781..1912398) Rhodopseudomonas palustris TIE-1 6409434 YP_001990781.1 CDS Rpal_1778 NC_011004.1 1912588 1913364 R KEGG: bja:blr5705 hypothetical protein; hypothetical protein complement(1912588..1913364) Rhodopseudomonas palustris TIE-1 6409435 YP_001990782.1 CDS Rpal_1779 NC_011004.1 1913364 1913759 R PFAM: cupin; KEGG: bja:blr5704 hypothetical protein; cupin complement(1913364..1913759) Rhodopseudomonas palustris TIE-1 6409436 YP_001990783.1 CDS Rpal_1780 NC_011004.1 1913811 1914605 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(1913811..1914605) Rhodopseudomonas palustris TIE-1 6409437 YP_001990784.1 CDS Rpal_1781 NC_011004.1 1914688 1915176 R PFAM: thioesterase superfamily protein; KEGG: bra:BRADO2784 conserved hypothetical protein; thioesterase superfamily; thioesterase superfamily protein complement(1914688..1915176) Rhodopseudomonas palustris TIE-1 6409438 YP_001990785.1 CDS Rpal_1782 NC_011004.1 1915331 1916695 D catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 1915331..1916695 Rhodopseudomonas palustris TIE-1 6409439 YP_001990786.1 CDS Rpal_1783 NC_011004.1 1917033 1917983 D SMART: TIR protein; KEGG: xac:XAC3296 hypothetical protein; TIR protein 1917033..1917983 Rhodopseudomonas palustris TIE-1 6409440 YP_001990787.1 CDS Rpal_1784 NC_011004.1 1917986 1918447 D hypothetical protein 1917986..1918447 Rhodopseudomonas palustris TIE-1 6409441 YP_001990788.1 CDS Rpal_1786 NC_011004.1 1919146 1921356 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 1919146..1921356 Rhodopseudomonas palustris TIE-1 6409443 YP_001990789.1 CDS Rpal_1787 NC_011004.1 1921602 1922783 R PFAM: acyltransferase 3; KEGG: bbt:BBta_5400 membrane protein of unknown function with acyltransferase family protein domain; acyltransferase 3 complement(1921602..1922783) Rhodopseudomonas palustris TIE-1 6409444 YP_001990790.1 CDS Rpal_1788 NC_011004.1 1922858 1923220 R PFAM: protein of unknown function DUF427; KEGG: bbt:BBta_5398 hypothetical protein; hypothetical protein complement(1922858..1923220) Rhodopseudomonas palustris TIE-1 6409445 YP_001990791.1 CDS Rpal_1789 NC_011004.1 1923383 1923619 D PFAM: BolA family protein; KEGG: bja:bsl5715 hypothetical protein; BolA family protein 1923383..1923619 Rhodopseudomonas palustris TIE-1 6409446 YP_001990792.1 CDS Rpal_1790 NC_011004.1 1923694 1924218 R PFAM: regulatory protein MarR; KEGG: bja:blr4984 transcriptional regulatory protein; MarR family transcriptional regulator complement(1923694..1924218) Rhodopseudomonas palustris TIE-1 6409447 YP_001990793.1 CDS Rpal_1791 NC_011004.1 1924402 1924773 R KEGG: nha:Nham_4529 hypothetical protein; hypothetical protein complement(1924402..1924773) Rhodopseudomonas palustris TIE-1 6409448 YP_001990794.1 CDS Rpal_1792 NC_011004.1 1924892 1925614 D KEGG: mrd:Mrad2831_4407 hypothetical protein; hypothetical protein 1924892..1925614 Rhodopseudomonas palustris TIE-1 6409449 YP_001990795.1 CDS Rpal_1793 NC_011004.1 1925670 1926743 R PFAM: fatty acid desaturase; KEGG: nha:Nham_1170 fatty acid desaturase; fatty acid desaturase complement(1925670..1926743) Rhodopseudomonas palustris TIE-1 6409450 YP_001990796.1 CDS Rpal_1794 NC_011004.1 1927098 1928078 R TIGRFAM: methyltransferase; KEGG: nha:Nham_1639 hypothetical protein; methyltransferase complement(1927098..1928078) Rhodopseudomonas palustris TIE-1 6409451 YP_001990797.1 CDS Rpal_1795 NC_011004.1 1928123 1929376 R PFAM: protein of unknown function DUF323; KEGG: bbt:BBta_5394 exported protein of unknown function; hypothetical protein complement(1928123..1929376) Rhodopseudomonas palustris TIE-1 6409452 YP_001990798.1 CDS Rpal_1796 NC_011004.1 1929667 1929993 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: bra:BRADO2793 glutaredoxin family protein; glutaredoxin-like protein 1929667..1929993 Rhodopseudomonas palustris TIE-1 6409453 YP_001990799.1 CDS Rpal_1797 NC_011004.1 1929990 1930532 D PFAM: Appr-1-p processing domain protein; KEGG: bja:bll5710 hypothetical protein; Appr-1-p processing protein 1929990..1930532 Rhodopseudomonas palustris TIE-1 6409454 YP_001990800.1 CDS Rpal_1798 NC_011004.1 1930592 1931872 D PFAM: beta-lactamase; KEGG: bja:bll5709 hypothetical protein; beta-lactamase 1930592..1931872 Rhodopseudomonas palustris TIE-1 6409455 YP_001990801.1 CDS Rpal_1799 NC_011004.1 1931883 1933511 R catalyzes the formation of benzaldehyde from benzoylformate; benzoylformate decarboxylase complement(1931883..1933511) Rhodopseudomonas palustris TIE-1 6409456 YP_001990802.1 CDS Rpal_1800 NC_011004.1 1933779 1934636 R KEGG: bra:BRADO1440 hypothetical protein; hypothetical protein complement(1933779..1934636) Rhodopseudomonas palustris TIE-1 6409457 YP_001990803.1 CDS Rpal_1801 NC_011004.1 1934649 1935743 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bra:BRADO1441 formyl-coenzyme A transferase NAD(P)-binding; L-carnitine dehydratase/bile acid-inducible protein F complement(1934649..1935743) Rhodopseudomonas palustris TIE-1 6409458 YP_001990804.1 CDS Rpal_1802 NC_011004.1 1935944 1937116 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bra:BRADO1442 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(1935944..1937116) Rhodopseudomonas palustris TIE-1 6409459 YP_001990805.1 CDS Rpal_1803 NC_011004.1 1937151 1938416 R PFAM: cytochrome P450; KEGG: bja:blr7243 cytochrome P450; cytochrome P450 complement(1937151..1938416) Rhodopseudomonas palustris TIE-1 6409460 YP_001990806.1 CDS Rpal_1804 NC_011004.1 1938764 1939936 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_6658 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1938764..1939936 Rhodopseudomonas palustris TIE-1 6409461 YP_001990807.1 CDS Rpal_1805 NC_011004.1 1940032 1940826 D PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: rle:RL3009 methyltransferase; type 11 methyltransferase 1940032..1940826 Rhodopseudomonas palustris TIE-1 6409462 YP_001990808.1 CDS Rpal_1806 NC_011004.1 1940823 1941647 R KEGG: bbt:BBta_6655 exported protein of unknown function; hypothetical protein complement(1940823..1941647) Rhodopseudomonas palustris TIE-1 6409463 YP_001990809.1 CDS Rpal_1807 NC_011004.1 1941716 1942297 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bbt:BBta_6654 exported protein of unknown function; ErfK/YbiS/YcfS/YnhG family protein complement(1941716..1942297) Rhodopseudomonas palustris TIE-1 6409464 YP_001990810.1 CDS Rpal_1808 NC_011004.1 1942478 1944022 D thiamine-pyrophosphate requiring enzyme; hypothetical protein 1942478..1944022 Rhodopseudomonas palustris TIE-1 6409465 YP_001990811.1 CDS Rpal_1809 NC_011004.1 1944135 1944566 D KEGG: bja:bll7047 hypothetical protein; hypothetical protein 1944135..1944566 Rhodopseudomonas palustris TIE-1 6409466 YP_001990812.1 CDS Rpal_1810 NC_011004.1 1944732 1945052 R hypothetical protein complement(1944732..1945052) Rhodopseudomonas palustris TIE-1 6409467 YP_001990813.1 CDS Rpal_1812 NC_011004.1 1946279 1947559 R KEGG: bja:bll2188 hypothetical protein; hypothetical protein complement(1946279..1947559) Rhodopseudomonas palustris TIE-1 6409470 YP_001990814.1 CDS Rpal_1813 NC_011004.1 1947800 1948393 R PFAM: conserved hypothetical protein; KEGG: bja:bll2189 hypothetical protein; hypothetical protein complement(1947800..1948393) Rhodopseudomonas palustris TIE-1 6409471 YP_001990815.1 CDS Rpal_1814 NC_011004.1 1948501 1949007 D KEGG: nha:Nham_3379 hypothetical protein; hypothetical protein 1948501..1949007 Rhodopseudomonas palustris TIE-1 6409472 YP_001990816.1 CDS Rpal_1815 NC_011004.1 1949016 1949843 R PFAM: inositol monophosphatase; KEGG: nwi:Nwi_0518 inositol monophosphatase; inositol monophosphatase complement(1949016..1949843) Rhodopseudomonas palustris TIE-1 6409473 YP_001990817.1 CDS Rpal_1816 NC_011004.1 1949977 1950633 D KEGG: bja:blr2191 hypothetical protein; hypothetical protein 1949977..1950633 Rhodopseudomonas palustris TIE-1 6409474 YP_001990818.1 CDS Rpal_1817 NC_011004.1 1950824 1953637 D PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: bbt:BBta_0524 chemotaxis protein CheA; CheA signal transduction histidine kinase 1950824..1953637 Rhodopseudomonas palustris TIE-1 6409475 YP_001990819.1 CDS Rpal_1818 NC_011004.1 1953634 1954134 D PFAM: CheW domain protein; KEGG: bra:BRADO1474 chemotaxis protein CheW; CheW protein 1953634..1954134 Rhodopseudomonas palustris TIE-1 6409476 YP_001990820.1 CDS Rpal_1819 NC_011004.1 1954202 1954567 D PFAM: response regulator receiver; KEGG: bra:BRADO1475 chemotaxis protein CheY; response regulator receiver protein 1954202..1954567 Rhodopseudomonas palustris TIE-1 6409477 YP_001990821.1 CDS Rpal_1820 NC_011004.1 1954709 1955821 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1954709..1955821 Rhodopseudomonas palustris TIE-1 6409478 YP_001990822.1 CDS Rpal_1821 NC_011004.1 1955818 1956696 D PFAM: MCP methyltransferase CheR-type; KEGG: nha:Nham_3372 MCP methyltransferase, CheR-type; CheR-type MCP methyltransferase 1955818..1956696 Rhodopseudomonas palustris TIE-1 6409479 YP_001990823.1 CDS Rpal_1822 NC_011004.1 1956997 1957698 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_3371 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator complement(1956997..1957698) Rhodopseudomonas palustris TIE-1 6409480 YP_001990824.1 CDS fliI NC_011004.1 1958066 1959391 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1958066..1959391 Rhodopseudomonas palustris TIE-1 6409481 YP_001990825.1 CDS Rpal_1824 NC_011004.1 1959501 1959929 D TIGRFAM: flagellar export protein FliJ; KEGG: bra:BRADO1499 flagelar FliJ protein; flagellar export protein FliJ 1959501..1959929 Rhodopseudomonas palustris TIE-1 6409482 YP_001990826.1 CDS Rpal_1825 NC_011004.1 1960105 1960653 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bra:BRADO1500 RNA polymerase ECF-type sigma factor; ECF subfamily RNA polymerase sigma-24 subunit 1960105..1960653 Rhodopseudomonas palustris TIE-1 6409483 YP_001990827.1 CDS Rpal_1826 NC_011004.1 1960653 1961600 D KEGG: bbt:BBta_6529 hypothetical protein; hypothetical protein 1960653..1961600 Rhodopseudomonas palustris TIE-1 6409484 YP_001990828.1 CDS Rpal_1827 NC_011004.1 1961798 1961998 R KEGG: bbt:BBta_6528 exported protein of unknown function; hypothetical protein complement(1961798..1961998) Rhodopseudomonas palustris TIE-1 6409485 YP_001990829.1 CDS flhA NC_011004.1 1962330 1964462 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(1962330..1964462) Rhodopseudomonas palustris TIE-1 6409486 YP_001990830.1 CDS Rpal_1829 NC_011004.1 1964725 1965969 D PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr2214 hypothetical protein; major facilitator superfamily protein 1964725..1965969 Rhodopseudomonas palustris TIE-1 6409487 YP_001990831.1 CDS Rpal_1830 NC_011004.1 1966061 1967752 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bra:BRADO2556 sensory transducer protein; signal peptide; methyl-accepting chemotaxis sensory transducer complement(1966061..1967752) Rhodopseudomonas palustris TIE-1 6409488 YP_001990832.1 CDS Rpal_1831 NC_011004.1 1968531 1969589 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mlo:mlr6727 transcriptional regulator; AraC family transcriptional regulator 1968531..1969589 Rhodopseudomonas palustris TIE-1 6409490 YP_001990833.1 CDS Rpal_1832 NC_011004.1 1969970 1971484 D TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; Hemerythrin HHE cation binding domain protein; KEGG: nwi:Nwi_1658 diguanylate cyclase; diguanylate cyclase 1969970..1971484 Rhodopseudomonas palustris TIE-1 6409491 YP_001990834.1 CDS Rpal_1833 NC_011004.1 1971517 1971636 R hypothetical protein complement(1971517..1971636) Rhodopseudomonas palustris TIE-1 6409492 YP_001990835.1 CDS Rpal_1834 NC_011004.1 1971681 1972547 D PFAM: iron permease FTR1; KEGG: bcs:BCAN_B0386 ferrous iron permease EfeU; iron permease FTR1 1971681..1972547 Rhodopseudomonas palustris TIE-1 6409493 YP_001990836.1 CDS Rpal_1835 NC_011004.1 1972538 1973248 R PFAM: transglutaminase domain protein; KEGG: abo:ABO_0204 hypothetical protein; transglutaminase domain-containing protein complement(1972538..1973248) Rhodopseudomonas palustris TIE-1 6409494 YP_001990837.1 CDS Rpal_1836 NC_011004.1 1973277 1973504 R hypothetical protein complement(1973277..1973504) Rhodopseudomonas palustris TIE-1 6409495 YP_001990838.1 CDS Rpal_1837 NC_011004.1 1973603 1973872 R KEGG: nha:Nham_2805 hypothetical protein; hypothetical protein complement(1973603..1973872) Rhodopseudomonas palustris TIE-1 6409496 YP_001990839.1 CDS Rpal_1838 NC_011004.1 1973949 1974950 R PFAM: alpha/beta hydrolase fold; KEGG: bra:BRADO6133 alpha/beta hydrolase; haloalkane dehalogenase; alpha/beta hydrolase fold protein complement(1973949..1974950) Rhodopseudomonas palustris TIE-1 6409497 YP_001990840.1 CDS Rpal_1839 NC_011004.1 1975103 1976365 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xau:Xaut_4226 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit 1975103..1976365 Rhodopseudomonas palustris TIE-1 6409498 YP_001990841.1 CDS Rpal_1840 NC_011004.1 1976362 1977588 D PFAM: protein of unknown function DUF214; KEGG: bbt:BBta_1848 lipoprotein-releasing system transmembrane protein LolC; hypothetical protein 1976362..1977588 Rhodopseudomonas palustris TIE-1 6409499 YP_001990842.1 CDS Rpal_1841 NC_011004.1 1977581 1978261 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: xau:Xaut_4228 ABC transporter; ABC transporter 1977581..1978261 Rhodopseudomonas palustris TIE-1 6409500 YP_001990843.1 CDS Rpal_1842 NC_011004.1 1978361 1979578 R KEGG: bja:blr4312 hypothetical protein; hypothetical protein complement(1978361..1979578) Rhodopseudomonas palustris TIE-1 6409501 YP_001990844.1 CDS Rpal_1843 NC_011004.1 1980183 1981004 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mrd:Mrad2831_3689 protein of unknown function DUF1078 domain protein; hypothetical protein 1980183..1981004 Rhodopseudomonas palustris TIE-1 6409502 YP_001990845.1 CDS Rpal_1844 NC_011004.1 1981136 1981876 R hypothetical protein complement(1981136..1981876) Rhodopseudomonas palustris TIE-1 6409503 YP_001990846.1 CDS Rpal_1845 NC_011004.1 1982223 1983188 D KEGG: sde:Sde_0514 hypothetical protein; hypothetical protein 1982223..1983188 Rhodopseudomonas palustris TIE-1 6409504 YP_001990847.1 CDS Rpal_1846 NC_011004.1 1983232 1985118 D KEGG: sde:Sde_0513 D-tyrosyl-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase 1983232..1985118 Rhodopseudomonas palustris TIE-1 6409505 YP_001990848.1 CDS Rpal_1847 NC_011004.1 1985212 1985598 D KEGG: rle:pRL100171 rhizosphere induced protein; rhizosphere induced protein 1985212..1985598 Rhodopseudomonas palustris TIE-1 6409506 YP_001990849.1 CDS Rpal_1848 NC_011004.1 1985602 1986063 R KEGG: bra:BRADO3674 hypothetical protein; hypothetical protein complement(1985602..1986063) Rhodopseudomonas palustris TIE-1 6409507 YP_001990850.1 CDS Rpal_1849 NC_011004.1 1986198 1987211 R PFAM: aldo/keto reductase; KEGG: bbt:BBta_0931 oxidoreductase (aldo/keto reductase); aldo/keto reductase complement(1986198..1987211) Rhodopseudomonas palustris TIE-1 6409508 YP_001990851.1 CDS Rpal_1850 NC_011004.1 1987372 1988580 R KEGG: bja:bll2304 probable ABC transporter substrate-binding protein; ABC transporter substrate-binding protein complement(1987372..1988580) Rhodopseudomonas palustris TIE-1 6409509 YP_001990852.1 CDS Rpal_1851 NC_011004.1 1988683 1989378 D PFAM: high-affinity nickel-transporter; KEGG: sal:Sala_3212 high-affinity nickel-transporter; high-affinity nickel-transporter 1988683..1989378 Rhodopseudomonas palustris TIE-1 6409510 YP_001990853.1 CDS Rpal_1852 NC_011004.1 1989409 1990623 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: nha:Nham_2861 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(1989409..1990623) Rhodopseudomonas palustris TIE-1 6409511 YP_001990854.1 CDS Rpal_1853 NC_011004.1 1990996 1991193 D KEGG: bja:blr5311 probable histon H1; histone H1 1990996..1991193 Rhodopseudomonas palustris TIE-1 6409512 YP_001990855.1 CDS Rpal_1854 NC_011004.1 1991402 1991764 D TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: azc:AZC_1071 hypothetical protein; queuosine biosynthesis protein QueD 1991402..1991764 Rhodopseudomonas palustris TIE-1 6409513 YP_001990856.1 CDS Rpal_1855 NC_011004.1 1991831 1992421 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: bbt:BBta_4024 hypothetical protein; hemerythrin HHE cation binding domain-containing protein complement(1991831..1992421) Rhodopseudomonas palustris TIE-1 6409514 YP_001990857.1 CDS Rpal_1856 NC_011004.1 1992563 1995484 R KEGG: bbt:BBta_0206 copper-transporting P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; ATPase P complement(1992563..1995484) Rhodopseudomonas palustris TIE-1 6409515 YP_001990858.1 CDS Rpal_1857 NC_011004.1 1995536 1995811 D PFAM: protein of unknown function DUF156; KEGG: bbt:BBta_0207 hypothetical protein; hypothetical protein 1995536..1995811 Rhodopseudomonas palustris TIE-1 6409516 YP_001990859.1 CDS Rpal_1858 NC_011004.1 1995842 1996522 R KEGG: nha:Nham_0414 hypothetical protein; hypothetical protein complement(1995842..1996522) Rhodopseudomonas palustris TIE-1 6409517 YP_001990860.1 CDS Rpal_1859 NC_011004.1 1996630 1997481 R KEGG: vvy:VV1588 hypothetical protein; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; 3,4-dihydroxyphenylacetate 2,3-dioxygenase complement(1996630..1997481) Rhodopseudomonas palustris TIE-1 6409518 YP_001990861.1 CDS Rpal_1860 NC_011004.1 1997509 1998051 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bra:BRADO6298 glyoxalase/bleomycin resistance protein/dioxygenase domain; glyoxalase/bleomycin resistance protein/dioxygenase complement(1997509..1998051) Rhodopseudomonas palustris TIE-1 6409519 YP_001990862.1 CDS Rpal_1861 NC_011004.1 1998207 1998509 R hypothetical protein complement(1998207..1998509) Rhodopseudomonas palustris TIE-1 6409520 YP_001990863.1 CDS Rpal_1862 NC_011004.1 1998764 2000113 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1998764..2000113) Rhodopseudomonas palustris TIE-1 6409521 YP_001990864.1 CDS Rpal_1863 NC_011004.1 2000142 2000852 R TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase 4VR; KEGG: bra:BRADO1653 4-vinyl protochlorophyllide reductase (bacteriochlorophyll synthase 23 kDa chain) (4-vinyl reductase); bacteriochlorophyll 4-vinyl reductase complement(2000142..2000852) Rhodopseudomonas palustris TIE-1 6409522 YP_001990865.1 CDS Rpal_1864 NC_011004.1 2000824 2002521 R KEGG: bbt:BBta_6404 Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD subunit; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase complement(2000824..2002521) Rhodopseudomonas palustris TIE-1 6409523 YP_001990866.1 CDS Rpal_1865 NC_011004.1 2002679 2003107 R KEGG: bbt:BBta_0349 hypothetical protein; hypothetical protein complement(2002679..2003107) Rhodopseudomonas palustris TIE-1 6409524 YP_001990867.1 CDS Rpal_1866 NC_011004.1 2003329 2004069 D PFAM: metallophosphoesterase; KEGG: bja:bll5683 probable serine/threonine phosphatase; metallophosphoesterase 2003329..2004069 Rhodopseudomonas palustris TIE-1 6409525 YP_001990868.1 CDS Rpal_1867 NC_011004.1 2004073 2005512 D PFAM: UspA domain protein; Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: bbt:BBta_5336 serine/threonine protein kinase; serine/threonine protein kinase 2004073..2005512 Rhodopseudomonas palustris TIE-1 6409526 YP_001990869.1 CDS Rpal_1868 NC_011004.1 2005558 2006208 R PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: nha:Nham_1909 transport-associated; transport-associated complement(2005558..2006208) Rhodopseudomonas palustris TIE-1 6409527 YP_001990870.1 CDS Rpal_1869 NC_011004.1 2006587 2008938 D PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: pna:Pnap_4497 fructose-6-phosphate phosphoketolase; phosphoketolase 2006587..2008938 Rhodopseudomonas palustris TIE-1 6409528 YP_001990871.1 CDS Rpal_1870 NC_011004.1 2009116 2009619 D PFAM: response regulator receiver; KEGG: bbt:BBta_0529 response regulator receiver protein; response regulator receiver protein 2009116..2009619 Rhodopseudomonas palustris TIE-1 6409529 YP_001990872.1 CDS Rpal_1871 NC_011004.1 2010264 2012414 D KEGG: bbt:BBta_1536 methyl-accepting chemotaxis protein with PAS domain; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 2010264..2012414 Rhodopseudomonas palustris TIE-1 6409530 YP_001990873.1 CDS Rpal_1872 NC_011004.1 2012593 2015406 D PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: bbt:BBta_0524 chemotaxis protein CheA; CheA signal transduction histidine kinase 2012593..2015406 Rhodopseudomonas palustris TIE-1 6409531 YP_001990874.1 CDS Rpal_1873 NC_011004.1 2015403 2015903 D PFAM: CheW domain protein; KEGG: bra:BRADO1474 chemotaxis protein CheW; CheW protein 2015403..2015903 Rhodopseudomonas palustris TIE-1 6409532 YP_001990875.1 CDS Rpal_1874 NC_011004.1 2015957 2016832 D PFAM: MCP methyltransferase CheR-type; KEGG: bja:bll0390 protein-glutamate O-methyltransferase; CheR-type MCP methyltransferase 2015957..2016832 Rhodopseudomonas palustris TIE-1 6409533 YP_001990876.1 CDS Rpal_1875 NC_011004.1 2016844 2017158 D KEGG: bra:BRADO6999 hypothetical protein; hypothetical protein 2016844..2017158 Rhodopseudomonas palustris TIE-1 6409534 YP_001990877.1 CDS Rpal_1876 NC_011004.1 2017387 2018637 D PFAM: EAL domain protein; response regulator receiver; KEGG: rru:Rru_A3494 diguanylate phosphodiesterase (EAL domain) with response regulator receiver modulation; response regulator receiver modulated diguanylate phosphodiesterase 2017387..2018637 Rhodopseudomonas palustris TIE-1 6409535 YP_001990878.1 CDS Rpal_1877 NC_011004.1 2018668 2021259 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: bra:BRADO7010 sensor histidine kinase with a response regulator receiver domain and a phosphotransferase (HPt) domain; multi-sensor hybrid histidine kinase complement(2018668..2021259) Rhodopseudomonas palustris TIE-1 6409536 YP_001990879.1 CDS Rpal_1878 NC_011004.1 2021682 2022308 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bra:BRADO6997 two-component transcriptional regulator, LuxR family; LuxR family transcriptional regulator 2021682..2022308 Rhodopseudomonas palustris TIE-1 6409537 YP_001990880.1 CDS Rpal_1879 NC_011004.1 2022359 2023141 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_1210 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR complement(2022359..2023141) Rhodopseudomonas palustris TIE-1 6409538 YP_001990881.1 CDS Rpal_1880 NC_011004.1 2023250 2024011 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO6422 short-chain dehydrogenase/reductase protein; 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase); short-chain dehydrogenase/reductase SDR 2023250..2024011 Rhodopseudomonas palustris TIE-1 6409539 YP_001990882.1 CDS Rpal_1881 NC_011004.1 2024496 2029094 D TIGRFAM: polymorphic outer membrane protein; outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: nha:Nham_3087 outer membrane autotransporter barrel; outer membrane autotransporter barrel domain-containing protein 2024496..2029094 Rhodopseudomonas palustris TIE-1 6409540 YP_001990883.1 CDS Rpal_1882 NC_011004.1 2029247 2030851 R PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bra:BRADO6420 glucose-methanol-choline oxidoreductase family protein; glucose-methanol-choline oxidoreductase complement(2029247..2030851) Rhodopseudomonas palustris TIE-1 6409541 YP_001990884.1 CDS Rpal_1883 NC_011004.1 2030922 2032355 R PFAM: Aldehyde Dehydrogenase_; KEGG: bja:blr7884 probable coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase complement(2030922..2032355) Rhodopseudomonas palustris TIE-1 6409542 YP_001990885.1 CDS Rpal_1884 NC_011004.1 2032940 2033461 D PFAM: GCN5-related N-acetyltransferase; KEGG: nwi:Nwi_0836 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2032940..2033461 Rhodopseudomonas palustris TIE-1 6409544 YP_001990886.1 CDS Rpal_1885 NC_011004.1 2033582 2033716 D hypothetical protein 2033582..2033716 Rhodopseudomonas palustris TIE-1 6409545 YP_001990887.1 CDS Rpal_1886 NC_011004.1 2033788 2034951 D KEGG: bja:bll7778 hypothetical protein; hypothetical protein 2033788..2034951 Rhodopseudomonas palustris TIE-1 6409546 YP_001990888.1 CDS Rpal_1887 NC_011004.1 2034948 2035388 R KEGG: nwi:Nwi_0912 hypothetical protein; hypothetical protein complement(2034948..2035388) Rhodopseudomonas palustris TIE-1 6409547 YP_001990889.1 CDS Rpal_1888 NC_011004.1 2035520 2036893 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bja:blr7776 probable cation efflux system protein; MATE efflux family protein complement(2035520..2036893) Rhodopseudomonas palustris TIE-1 6409548 YP_001990890.1 CDS Rpal_1889 NC_011004.1 2037168 2038403 D PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A1891 permease of the major facilitator superfamily; major facilitator superfamily protein 2037168..2038403 Rhodopseudomonas palustris TIE-1 6409549 YP_001990891.1 CDS Rpal_1890 NC_011004.1 2038605 2039201 D PFAM: manganese and iron superoxide dismutase; KEGG: bra:BRADO6273 superoxide dismutase, iron/manganese cofactor; Superoxide dismutase 2038605..2039201 Rhodopseudomonas palustris TIE-1 6409550 YP_001990892.1 CDS Rpal_1891 NC_011004.1 2039354 2039728 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2039354..2039728 Rhodopseudomonas palustris TIE-1 6409551 YP_001990893.1 CDS Rpal_1892 NC_011004.1 2039796 2040656 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bbr:BB0428 probable transcriptional regulator; AraC family transcriptional regulator complement(2039796..2040656) Rhodopseudomonas palustris TIE-1 6409552 YP_001990894.1 CDS Rpal_1894 NC_011004.1 2041076 2041711 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: azc:AZC_3390 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 2041076..2041711 Rhodopseudomonas palustris TIE-1 6409554 YP_001990895.1 CDS Rpal_1897 NC_011004.1 2042527 2043015 R PFAM: CinA domain protein; KEGG: bja:blr7909 hypothetical protein; CinA domain-containing protein complement(2042527..2043015) Rhodopseudomonas palustris TIE-1 6409557 YP_001990896.1 CDS Rpal_1898 NC_011004.1 2043133 2043876 R PFAM: protein of unknown function DUF81; KEGG: bja:blr6618 hypothetical protein; hypothetical protein complement(2043133..2043876) Rhodopseudomonas palustris TIE-1 6409558 YP_001990897.1 CDS Rpal_1899 NC_011004.1 2044022 2045809 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:bll7899 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2044022..2045809 Rhodopseudomonas palustris TIE-1 6409559 YP_001990898.1 CDS Rpal_1900 NC_011004.1 2045944 2047416 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(2045944..2047416) Rhodopseudomonas palustris TIE-1 6409560 YP_001990899.1 CDS Rpal_1901 NC_011004.1 2047828 2048682 R KEGG: nha:Nham_2429 hypothetical protein; hypothetical protein complement(2047828..2048682) Rhodopseudomonas palustris TIE-1 6409561 YP_001990900.1 CDS Rpal_1902 NC_011004.1 2048787 2050343 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(2048787..2050343) Rhodopseudomonas palustris TIE-1 6409562 YP_001990901.1 CDS Rpal_1903 NC_011004.1 2050622 2051797 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(2050622..2051797) Rhodopseudomonas palustris TIE-1 6409563 YP_001990902.1 CDS Rpal_1904 NC_011004.1 2051929 2052606 D PFAM: regulatory protein TetR; KEGG: bja:bll7805 transcriptional regulatory protein; TetR family transcriptional regulator 2051929..2052606 Rhodopseudomonas palustris TIE-1 6409564 YP_001990903.1 CDS Rpal_1905 NC_011004.1 2053063 2053821 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll7804 3-hydroxyacyl-CoA dehydrogenase type II; short-chain dehydrogenase/reductase SDR 2053063..2053821 Rhodopseudomonas palustris TIE-1 6409565 YP_001990904.1 CDS Rpal_1906 NC_011004.1 2054045 2054851 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbt:BBta_7120 enoyl-CoA hydratase; Enoyl-CoA hydratase/isomerase 2054045..2054851 Rhodopseudomonas palustris TIE-1 6409566 YP_001990905.1 CDS Rpal_1907 NC_011004.1 2054902 2056776 D PFAM: AMP-dependent synthetase and ligase; KEGG: bra:BRADO0933 acyl-CoA synthetase; acyl-CoA synthetase 2054902..2056776 Rhodopseudomonas palustris TIE-1 6409567 YP_001990906.1 CDS Rpal_1908 NC_011004.1 2056943 2058070 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:bll7801 dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2056943..2058070 Rhodopseudomonas palustris TIE-1 6409568 YP_001990907.1 CDS Rpal_1909 NC_011004.1 2058207 2059454 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:bll7800 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2058207..2059454 Rhodopseudomonas palustris TIE-1 6409569 YP_001990908.1 CDS Rpal_1910 NC_011004.1 2059605 2060849 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bra:BRADO0936 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2059605..2060849 Rhodopseudomonas palustris TIE-1 6409570 YP_001990909.1 CDS Rpal_1911 NC_011004.1 2061016 2061714 D PFAM: nitroreductase; KEGG: bbt:BBta_7115 hypothetical protein; nitroreductase 2061016..2061714 Rhodopseudomonas palustris TIE-1 6409571 YP_001990910.1 CDS Rpal_1912 NC_011004.1 2061890 2062672 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr7857 3-hydroxybutyryl-CoA dehydratase; Enoyl-CoA hydratase/isomerase complement(2061890..2062672) Rhodopseudomonas palustris TIE-1 6409572 YP_001990911.1 CDS Rpal_1913 NC_011004.1 2062973 2063647 D PFAM: cyclic nucleotide-binding; KEGG: bbt:BBta_7109 hypothetical protein; cyclic nucleotide-binding protein 2062973..2063647 Rhodopseudomonas palustris TIE-1 6409573 YP_001990912.1 CDS Rpal_1914 NC_011004.1 2063659 2064543 D KEGG: nha:Nham_0653 hypothetical protein; hypothetical protein 2063659..2064543 Rhodopseudomonas palustris TIE-1 6409574 YP_001990913.1 CDS Rpal_1915 NC_011004.1 2064794 2065198 D KEGG: nha:Nham_0654 hypothetical protein; hypothetical protein 2064794..2065198 Rhodopseudomonas palustris TIE-1 6409575 YP_001990914.1 CDS Rpal_1916 NC_011004.1 2065472 2067682 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aeh:Mlg_2511 diguanylate cyclase with PAS/PAC sensor; diguanylate cyclase 2065472..2067682 Rhodopseudomonas palustris TIE-1 6409576 YP_001990915.1 CDS Rpal_1917 NC_011004.1 2067887 2068273 R KEGG: sil:SPO0412 hypothetical protein; hypothetical protein complement(2067887..2068273) Rhodopseudomonas palustris TIE-1 6409577 YP_001990916.1 CDS Rpal_1918 NC_011004.1 2068520 2068927 D KEGG: nha:Nham_0655 hypothetical protein; hypothetical protein 2068520..2068927 Rhodopseudomonas palustris TIE-1 6409578 YP_001990917.1 CDS Rpal_1919 NC_011004.1 2068934 2069266 R PFAM: protein of unknown function UPF0153; KEGG: bra:BRADO0949 hypothetical protein; hypothetical protein complement(2068934..2069266) Rhodopseudomonas palustris TIE-1 6409579 YP_001990918.1 CDS Rpal_1920 NC_011004.1 2069330 2069950 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bja:bll7835 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(2069330..2069950) Rhodopseudomonas palustris TIE-1 6409580 YP_001990919.1 CDS Rpal_1921 NC_011004.1 2070052 2070969 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:blr7836 transcriptional regulatory protein; LysR family transcriptional regulator 2070052..2070969 Rhodopseudomonas palustris TIE-1 6409581 YP_001990920.1 CDS Rpal_1922 NC_011004.1 2070966 2071616 D PFAM: 2OG-Fe(II) oxygenase; KEGG: bbt:BBta_2936 alkylated DNA repair protein AlkB; 2OG-Fe(II) oxygenase 2070966..2071616 Rhodopseudomonas palustris TIE-1 6409582 YP_001990921.1 CDS Rpal_1923 NC_011004.1 2071623 2072954 R TIGRFAM: phenylacetate-CoA ligase; KEGG: bja:blr2897 phenylacetate-coenzyme A ligase; phenylacetate-CoA ligase complement(2071623..2072954) Rhodopseudomonas palustris TIE-1 6409583 YP_001990922.1 CDS Rpal_1924 NC_011004.1 2072969 2073442 R TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: bra:BRADO2525 phenylacetic acid degradation protein with thioesterase/thiol ester dehydrase-isomerase domain; phenylacetic acid degradation protein PaaD complement(2072969..2073442) Rhodopseudomonas palustris TIE-1 6409584 YP_001990923.1 CDS Rpal_1925 NC_011004.1 2073667 2075706 D catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 2073667..2075706 Rhodopseudomonas palustris TIE-1 6409585 YP_001990924.1 CDS Rpal_1926 NC_011004.1 2075763 2076779 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr2898 zinc binding dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein 2075763..2076779 Rhodopseudomonas palustris TIE-1 6409586 YP_001990925.1 CDS Rpal_1927 NC_011004.1 2077021 2077758 D hypothetical protein 2077021..2077758 Rhodopseudomonas palustris TIE-1 6409587 YP_001990926.1 CDS Rpal_1928 NC_011004.1 2078244 2079488 R PFAM: RES domain protein; KEGG: spc:Sputcn32_3793 hypothetical protein; RES domain-containing protein complement(2078244..2079488) Rhodopseudomonas palustris TIE-1 6409588 YP_001990927.1 CDS Rpal_1929 NC_011004.1 2080450 2081412 R PFAM: fatty acid desaturase; KEGG: ccr:CC_3422 hypothetical protein; fatty acid desaturase complement(2080450..2081412) Rhodopseudomonas palustris TIE-1 6409589 YP_001990928.1 CDS Rpal_1930 NC_011004.1 2081465 2082688 R PFAM: OsmC family protein; KEGG: bja:bll2902 hypothetical protein; OsmC family protein complement(2081465..2082688) Rhodopseudomonas palustris TIE-1 6409590 YP_001990929.1 CDS Rpal_1931 NC_011004.1 2082867 2083532 R PFAM: oxidoreductase molybdopterin binding; KEGG: bbt:BBta_2875 hypothetical protein; molybdopterin binding oxidoreductase complement(2082867..2083532) Rhodopseudomonas palustris TIE-1 6409591 YP_001990930.1 CDS Rpal_1932 NC_011004.1 2083555 2084754 R PFAM: cytochrome P450; KEGG: nha:Nham_2693 cytochrome P450; cytochrome P450 complement(2083555..2084754) Rhodopseudomonas palustris TIE-1 6409592 YP_001990931.1 CDS Rpal_1933 NC_011004.1 2084823 2085050 R KEGG: bja:bsl2906 probable ferredoxin; ferredoxin complement(2084823..2085050) Rhodopseudomonas palustris TIE-1 6409593 YP_001990932.1 CDS Rpal_1934 NC_011004.1 2085151 2086584 R PFAM: Amidase; KEGG: bra:BRADO2532 amidotransferase; amidase complement(2085151..2086584) Rhodopseudomonas palustris TIE-1 6409594 YP_001990933.1 CDS Rpal_1935 NC_011004.1 2086723 2087835 D PFAM: SbmABacA family protein; ABC transporter; KEGG: bra:BRADO1574 ABC transporter-like; SbmABacA family protein 2086723..2087835 Rhodopseudomonas palustris TIE-1 6409595 YP_001990934.1 CDS Rpal_1936 NC_011004.1 2087851 2089227 R KEGG: bja:blr4657 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1; beta-galactosidase complement(2087851..2089227) Rhodopseudomonas palustris TIE-1 6409596 YP_001990935.1 CDS Rpal_1937 NC_011004.1 2089413 2090192 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_2878 short chain dehydrogenase; short chain dehydrogenase complement(2089413..2090192) Rhodopseudomonas palustris TIE-1 6409597 YP_001990936.1 CDS Rpal_1938 NC_011004.1 2090235 2091719 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr6445 ABC transporter ATP-binding protein; ABC transporter complement(2090235..2091719) Rhodopseudomonas palustris TIE-1 6409598 YP_001990937.1 CDS Rpal_1939 NC_011004.1 2091719 2092642 R PFAM: inner-membrane translocator; KEGG: bja:blr6444 ABC transporter permease protein; inner-membrane translocator complement(2091719..2092642) Rhodopseudomonas palustris TIE-1 6409599 YP_001990938.1 CDS Rpal_1940 NC_011004.1 2092644 2093519 R PFAM: inner-membrane translocator; KEGG: bja:blr6443 ABC transporter permease protein; inner-membrane translocator complement(2092644..2093519) Rhodopseudomonas palustris TIE-1 6409600 YP_001990939.1 CDS Rpal_1941 NC_011004.1 2093716 2094966 R PFAM: extracellular ligand-binding receptor; KEGG: bja:blr6446 ABC transporter substrate-binding protein; extracellular ligand-binding receptor complement(2093716..2094966) Rhodopseudomonas palustris TIE-1 6409601 YP_001990940.1 CDS Rpal_1942 NC_011004.1 2095173 2096252 D KEGG: bja:blr2916 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 2095173..2096252 Rhodopseudomonas palustris TIE-1 6409602 YP_001990941.1 CDS Rpal_1943 NC_011004.1 2096286 2097125 R KEGG: bur:Bcep18194_A5663 DNA translocase FtsK; hypothetical protein complement(2096286..2097125) Rhodopseudomonas palustris TIE-1 6409603 YP_001990942.1 CDS Rpal_1944 NC_011004.1 2097266 2098180 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bbt:BBta_2880 phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(2097266..2098180) Rhodopseudomonas palustris TIE-1 6409604 YP_001990943.1 CDS Rpal_1945 NC_011004.1 2098215 2099465 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(2098215..2099465) Rhodopseudomonas palustris TIE-1 6409605 YP_001990944.1 CDS Rpal_1946 NC_011004.1 2099535 2100485 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll2920 transcriptional regulatory protein; LysR family transcriptional regulator complement(2099535..2100485) Rhodopseudomonas palustris TIE-1 6409606 YP_001990945.1 CDS Rpal_1947 NC_011004.1 2100601 2101419 D PFAM: protein of unknown function DUF1445; KEGG: bra:BRADO2538 hypothetical protein; hypothetical protein 2100601..2101419 Rhodopseudomonas palustris TIE-1 6409607 YP_001990946.1 CDS Rpal_1948 NC_011004.1 2101477 2102724 D PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO2539 branched-chain amino acid ABC transporter (substrate-binding protein); branched-chain amino acid ABC transporter substrate-binding protein 2101477..2102724 Rhodopseudomonas palustris TIE-1 6409608 YP_001990947.1 CDS Rpal_1949 NC_011004.1 2102852 2103730 D PFAM: inner-membrane translocator; KEGG: bja:blr2923 amino acid ABC transporter permease protein; amino acid ABC transporter permease 2102852..2103730 Rhodopseudomonas palustris TIE-1 6409609 YP_001990948.1 CDS Rpal_1950 NC_011004.1 2103730 2104716 D PFAM: inner-membrane translocator; KEGG: bbt:BBta_2886 ABC transporter permiase component; inner-membrane translocator 2103730..2104716 Rhodopseudomonas palustris TIE-1 6409610 YP_001990949.1 CDS Rpal_1951 NC_011004.1 2104713 2105447 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr2925 amino acid ABC transporter ATP-binding protein; ABC transporter 2104713..2105447 Rhodopseudomonas palustris TIE-1 6409611 YP_001990950.1 CDS Rpal_1952 NC_011004.1 2105431 2106135 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO2543 high-affinity branched-chain amino acid transport protein (ABC transporter ATP-binding protein); ABC transporter 2105431..2106135 Rhodopseudomonas palustris TIE-1 6409612 YP_001990951.1 CDS Rpal_1953 NC_011004.1 2106329 2107108 D PFAM: xylose isomerase; KEGG: bja:blr2929 hypothetical protein; Hydroxypyruvate isomerase 2106329..2107108 Rhodopseudomonas palustris TIE-1 6409613 YP_001990952.1 CDS Rpal_1954 NC_011004.1 2107321 2110515 D PFAM: acriflavin resistance protein; KEGG: bja:blr2934 probable cation efflux protein; acriflavin resistance protein 2107321..2110515 Rhodopseudomonas palustris TIE-1 6409614 YP_001990953.1 CDS Rpal_1955 NC_011004.1 2110505 2111707 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:blr2935 hypothetical protein; RND family efflux transporter MFP subunit 2110505..2111707 Rhodopseudomonas palustris TIE-1 6409615 YP_001990954.1 CDS Rpal_1956 NC_011004.1 2111875 2113389 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(2111875..2113389) Rhodopseudomonas palustris TIE-1 6409616 YP_001990955.1 CDS Rpal_1957 NC_011004.1 2113429 2114208 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_2917 reductase; short-chain dehydrogenase/reductase SDR complement(2113429..2114208) Rhodopseudomonas palustris TIE-1 6409617 YP_001990956.1 CDS Rpal_1958 NC_011004.1 2114376 2115176 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2114376..2115176 Rhodopseudomonas palustris TIE-1 6409618 YP_001990957.1 CDS Rpal_1959 NC_011004.1 2115184 2116179 D PFAM: aminoglycoside phosphotransferase; KEGG: bbt:BBta_2919 hypothetical protein; aminoglycoside phosphotransferase 2115184..2116179 Rhodopseudomonas palustris TIE-1 6409619 YP_001990958.1 CDS Rpal_1960 NC_011004.1 2116198 2116578 D KEGG: bra:BRADO2573 hypothetical protein; hypothetical protein 2116198..2116578 Rhodopseudomonas palustris TIE-1 6409620 YP_001990959.1 CDS Rpal_1961 NC_011004.1 2116605 2116946 R KEGG: azo:azo2629 hypothetical protein; hypothetical protein complement(2116605..2116946) Rhodopseudomonas palustris TIE-1 6409621 YP_001990960.1 CDS Rpal_1962 NC_011004.1 2117068 2117847 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2117068..2117847) Rhodopseudomonas palustris TIE-1 6409622 YP_001990961.1 CDS Rpal_1963 NC_011004.1 2117974 2119248 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bra:BRADO2575 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2117974..2119248 Rhodopseudomonas palustris TIE-1 6409623 YP_001990962.1 CDS Rpal_1964 NC_011004.1 2119622 2121199 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(2119622..2121199) Rhodopseudomonas palustris TIE-1 6409624 YP_001990963.1 CDS Rpal_1965 NC_011004.1 2121497 2122369 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO2577 oxidoreductase; short-chain dehydrogenase/reductase SDR complement(2121497..2122369) Rhodopseudomonas palustris TIE-1 6409625 YP_001990964.1 CDS Rpal_1966 NC_011004.1 2122477 2123289 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2122477..2123289 Rhodopseudomonas palustris TIE-1 6409626 YP_001990965.1 CDS Rpal_1967 NC_011004.1 2123438 2124982 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2123438..2124982 Rhodopseudomonas palustris TIE-1 6409627 YP_001990966.1 CDS Rpal_1968 NC_011004.1 2124979 2127780 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: bja:bll4276 two-component hybrid sensor and regulator; signal transduction histidine kinase, nitrogen specific, NtrB complement(2124979..2127780) Rhodopseudomonas palustris TIE-1 6409628 YP_001990967.1 CDS Rpal_1969 NC_011004.1 2127941 2128831 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_2659 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2127941..2128831) Rhodopseudomonas palustris TIE-1 6409629 YP_001990968.1 CDS Rpal_1970 NC_011004.1 2128828 2129892 R PFAM: conserved hypothetical protein; KEGG: bra:BRADO0268 hypothetical protein; hypothetical protein complement(2128828..2129892) Rhodopseudomonas palustris TIE-1 6409630 YP_001990969.1 CDS Rpal_1971 NC_011004.1 2130171 2130953 D KEGG: nha:Nham_4237 hypothetical protein; hypothetical protein 2130171..2130953 Rhodopseudomonas palustris TIE-1 6409631 YP_001990970.1 CDS Rpal_1972 NC_011004.1 2131054 2133864 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 2131054..2133864 Rhodopseudomonas palustris TIE-1 6409632 YP_001990971.1 CDS Rpal_1973 NC_011004.1 2134002 2134331 D PFAM: small multidrug resistance protein; KEGG: cbd:COXBU7E912_0802 quaternary ammonium compound-resistance protein QacE; small multidrug resistance protein 2134002..2134331 Rhodopseudomonas palustris TIE-1 6409633 YP_001990972.1 CDS Rpal_1974 NC_011004.1 2134713 2135375 D KEGG: spb:M28_Spy0864 hypothetical protein; hypothetical protein 2134713..2135375 Rhodopseudomonas palustris TIE-1 6409634 YP_001990973.1 CDS Rpal_1975 NC_011004.1 2135399 2135809 D hypothetical protein 2135399..2135809 Rhodopseudomonas palustris TIE-1 6409635 YP_001990974.1 CDS Rpal_1976 NC_011004.1 2136231 2137556 D PFAM: OmpA/MotB domain protein; KEGG: bra:BRADO2722 conserved hypothetical protein; outer membrane protein and related peptidoglycan-associated (LipO)proteins; OmpA/MotB domain-containing protein 2136231..2137556 Rhodopseudomonas palustris TIE-1 6409636 YP_001990975.1 CDS Rpal_1977 NC_011004.1 2137714 2138628 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO2583 short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(2137714..2138628) Rhodopseudomonas palustris TIE-1 6409637 YP_001990976.1 CDS Rpal_1978 NC_011004.1 2138916 2140055 R KEGG: bra:BRADO2584 hypothetical protein; hypothetical protein complement(2138916..2140055) Rhodopseudomonas palustris TIE-1 6409638 YP_001990977.1 CDS Rpal_1979 NC_011004.1 2140061 2140474 R PFAM: protein of unknown function DUF35; KEGG: bja:bll2959 hypothetical protein; hypothetical protein complement(2140061..2140474) Rhodopseudomonas palustris TIE-1 6409639 YP_001990978.1 CDS Rpal_1980 NC_011004.1 2140770 2142119 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2140770..2142119 Rhodopseudomonas palustris TIE-1 6409640 YP_001990979.1 CDS Rpal_1981 NC_011004.1 2142112 2142798 D KEGG: bja:blr2961 hypothetical protein; hypothetical protein 2142112..2142798 Rhodopseudomonas palustris TIE-1 6409641 YP_001990980.1 CDS Rpal_1982 NC_011004.1 2142973 2143422 R PFAM: thioesterase superfamily protein; KEGG: pla:Plav_2272 thioesterase superfamily protein; thioesterase superfamily protein complement(2142973..2143422) Rhodopseudomonas palustris TIE-1 6409642 YP_001990981.1 CDS Rpal_1983 NC_011004.1 2143761 2144933 R catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase complement(2143761..2144933) Rhodopseudomonas palustris TIE-1 6409643 YP_001990982.1 CDS Rpal_1984 NC_011004.1 2145102 2146112 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:blr7839 probable substrate-binding protein; TRAP dicarboxylate transporter subunit DctP 2145102..2146112 Rhodopseudomonas palustris TIE-1 6409644 YP_001990983.1 CDS Rpal_1985 NC_011004.1 2146259 2146831 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bra:BRADO0957 TrapT family, DctQ subunit, C4-dicarboxylate transport; tripartite AtP-independent periplasmic transporter subunit DctQ 2146259..2146831 Rhodopseudomonas palustris TIE-1 6409645 YP_001990984.1 CDS Rpal_1986 NC_011004.1 2146838 2148145 D TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:blr7841 hypothetical protein; TRAP dicarboxylate transporter subunit DctM 2146838..2148145 Rhodopseudomonas palustris TIE-1 6409646 YP_001990985.1 CDS Rpal_1987 NC_011004.1 2148312 2148773 D KEGG: bja:blr7842 hypothetical protein; hypothetical protein 2148312..2148773 Rhodopseudomonas palustris TIE-1 6409647 YP_001990986.1 CDS Rpal_1988 NC_011004.1 2149071 2149877 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2149071..2149877 Rhodopseudomonas palustris TIE-1 6409648 YP_001990987.1 CDS Rpal_1989 NC_011004.1 2149889 2151784 D catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase 2149889..2151784 Rhodopseudomonas palustris TIE-1 6409649 YP_001990988.1 CDS Rpal_1990 NC_011004.1 2152023 2152442 D PFAM: thioesterase superfamily protein; KEGG: bbt:BBta_7090 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 2152023..2152442 Rhodopseudomonas palustris TIE-1 6409650 YP_001990989.1 CDS Rpal_1991 NC_011004.1 2152522 2153679 D PFAM: extracellular ligand-binding receptor; KEGG: bbt:BBta_7089 branched-chain amino acid transport protein; extracellular ligand-binding receptor 2152522..2153679 Rhodopseudomonas palustris TIE-1 6409651 YP_001990990.1 CDS Rpal_1992 NC_011004.1 2153995 2154849 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: reu:Reut_B3994 GGDEF; diguanylate cyclase 2153995..2154849 Rhodopseudomonas palustris TIE-1 6409652 YP_001990991.1 CDS Rpal_1993 NC_011004.1 2154787 2155506 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr7834 ABC transporter ATP-binding protein; ABC transporter complement(2154787..2155506) Rhodopseudomonas palustris TIE-1 6409653 YP_001990992.1 CDS Rpal_1994 NC_011004.1 2155503 2157275 R PFAM: inner-membrane translocator; ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO0970 ABC tranpsorter, permease protein (N-ter) and ATP-binding protein (C-ter); branched-chain amino acid transport protein; ABC transporter complement(2155503..2157275) Rhodopseudomonas palustris TIE-1 6409654 YP_001990993.1 CDS Rpal_1995 NC_011004.1 2157281 2158321 R PFAM: inner-membrane translocator; KEGG: bra:BRADO0971 ABC transporter permease protein; branched-chain amino acid transport protein; inner-membrane translocator complement(2157281..2158321) Rhodopseudomonas palustris TIE-1 6409655 YP_001990994.1 CDS Rpal_1996 NC_011004.1 2158486 2159004 D PFAM: regulatory protein MarR; KEGG: bbt:BBta_7084 transcriptional regulator, MarR family; MarR family transcriptional regulator 2158486..2159004 Rhodopseudomonas palustris TIE-1 6409656 YP_001990995.1 CDS Rpal_1997 NC_011004.1 2159141 2160871 R PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: bja:blr2614 hypothetical protein; sodium/hydrogen exchanger complement(2159141..2160871) Rhodopseudomonas palustris TIE-1 6409657 YP_001990996.1 CDS Rpal_1998 NC_011004.1 2160920 2161504 D KEGG: bja:bll2613 hypothetical protein; hypothetical protein 2160920..2161504 Rhodopseudomonas palustris TIE-1 6409658 YP_001990997.1 CDS Rpal_1999 NC_011004.1 2161624 2163198 D PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bja:bll7624 probable adenylate cyclase; adenylate/guanylate cyclase 2161624..2163198 Rhodopseudomonas palustris TIE-1 6409659 YP_001990998.1 CDS Rpal_2000 NC_011004.1 2163440 2164720 R PFAM: MOFRL domain protein; KEGG: nha:Nham_0659 hydroxypyruvate reductase; hydroxypyruvate reductase complement(2163440..2164720) Rhodopseudomonas palustris TIE-1 6409660 YP_001990999.1 CDS Rpal_2001 NC_011004.1 2164920 2166155 R PFAM: extracellular ligand-binding receptor; KEGG: bja:blr7827 ABC transporter substrate-binding protein; extracellular ligand-binding receptor complement(2164920..2166155) Rhodopseudomonas palustris TIE-1 6409661 YP_001991000.1 CDS Rpal_2002 NC_011004.1 2166398 2167885 R TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: bbt:BBta_2983 uracil-DNA glycosylase; phage SPO1 DNA polymerase-like protein complement(2166398..2167885) Rhodopseudomonas palustris TIE-1 6409662 YP_001991001.1 CDS Rpal_2003 NC_011004.1 2167982 2169232 R PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: nwi:Nwi_2258 elongator protein 3/MiaB/NifB; radical SAM domain-containing protein complement(2167982..2169232) Rhodopseudomonas palustris TIE-1 6409663 YP_001991002.1 CDS Rpal_2004 NC_011004.1 2169399 2170184 D KEGG: bbt:BBta_2985 hypothetical protein; hypothetical protein 2169399..2170184 Rhodopseudomonas palustris TIE-1 6409664 YP_001991003.1 CDS Rpal_2005 NC_011004.1 2170237 2171673 D KEGG: nha:Nham_2667 hypothetical protein; hypothetical protein 2170237..2171673 Rhodopseudomonas palustris TIE-1 6409665 YP_001991004.1 CDS dnaE2 NC_011004.1 2171825 2175412 D DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 2171825..2175412 Rhodopseudomonas palustris TIE-1 6409666 YP_001991005.1 CDS Rpal_2007 NC_011004.1 2175418 2176371 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: sen:SACE_4472 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(2175418..2176371) Rhodopseudomonas palustris TIE-1 6409667 YP_001991006.1 CDS Rpal_2008 NC_011004.1 2176448 2177398 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: scl:sce0177 transcriptional regulator, LysR family; LysR family transcriptional regulator 2176448..2177398 Rhodopseudomonas palustris TIE-1 6409668 YP_001991007.1 CDS Rpal_2009 NC_011004.1 2177447 2178844 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr3030 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 2177447..2178844 Rhodopseudomonas palustris TIE-1 6409669 YP_001991008.1 CDS Rpal_2010 NC_011004.1 2179064 2180302 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_2988 exported protein of unknown function; RND family efflux transporter MFP subunit 2179064..2180302 Rhodopseudomonas palustris TIE-1 6409670 YP_001991009.1 CDS Rpal_2011 NC_011004.1 2180459 2183581 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: bbt:BBta_2989 cation/heavy metal efflux system protein; CzcA family heavy metal efflux pump 2180459..2183581 Rhodopseudomonas palustris TIE-1 6409671 YP_001991010.1 CDS Rpal_2012 NC_011004.1 2183781 2184098 D KEGG: bbt:BBta_5457 hypothetical protein; hypothetical protein 2183781..2184098 Rhodopseudomonas palustris TIE-1 6409672 YP_001991011.1 CDS Rpal_2013 NC_011004.1 2184195 2185613 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: bbt:BBta_3004 outer TolC membrane protein; TolC family type I secretion outer membrane protein complement(2184195..2185613) Rhodopseudomonas palustris TIE-1 6409673 YP_001991012.1 CDS Rpal_2014 NC_011004.1 2185812 2186591 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:bll3036 enoyl CoA hydratase; Enoyl-CoA hydratase/isomerase complement(2185812..2186591) Rhodopseudomonas palustris TIE-1 6409674 YP_001991013.1 CDS Rpal_2015 NC_011004.1 2186675 2187412 R KEGG: bja:bll3037 hypothetical protein; hypothetical protein complement(2186675..2187412) Rhodopseudomonas palustris TIE-1 6409675 YP_001991014.1 CDS Rpal_2016 NC_011004.1 2187667 2188212 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2187667..2188212 Rhodopseudomonas palustris TIE-1 6409676 YP_001991015.1 CDS Rpal_2017 NC_011004.1 2188215 2188853 D PFAM: protein of unknown function DUF1109; KEGG: bbt:BBta_3008 membrane protein of unknown function; hypothetical protein 2188215..2188853 Rhodopseudomonas palustris TIE-1 6409677 YP_001991016.1 CDS Rpal_2018 NC_011004.1 2188970 2189314 D KEGG: xau:Xaut_0421 hypothetical protein; hypothetical protein 2188970..2189314 Rhodopseudomonas palustris TIE-1 6409678 YP_001991017.1 CDS Rpal_2019 NC_011004.1 2189375 2191603 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_2201 TonB-dependent receptor; TonB-dependent receptor 2189375..2191603 Rhodopseudomonas palustris TIE-1 6409679 YP_001991018.1 CDS Rpal_2020 NC_011004.1 2191626 2192735 R KEGG: nha:Nham_2660 hypothetical protein; hypothetical protein complement(2191626..2192735) Rhodopseudomonas palustris TIE-1 6409680 YP_001991019.1 CDS Rpal_2021 NC_011004.1 2192773 2193918 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bbt:BBta_3010 membrane protein of unknown function with diguanylate cyclase domain (GGDEF domain); diguanylate cyclase complement(2192773..2193918) Rhodopseudomonas palustris TIE-1 6409681 YP_001991020.1 CDS Rpal_2022 NC_011004.1 2194307 2194876 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2194307..2194876 Rhodopseudomonas palustris TIE-1 6409682 YP_001991021.1 CDS Rpal_2023 NC_011004.1 2194873 2195706 D KEGG: bbt:BBta_3012 hypothetical protein; hypothetical protein 2194873..2195706 Rhodopseudomonas palustris TIE-1 6409683 YP_001991022.1 CDS Rpal_2024 NC_011004.1 2196192 2196710 D KEGG: nwi:Nwi_2244 hypothetical protein; hypothetical protein 2196192..2196710 Rhodopseudomonas palustris TIE-1 6409684 YP_001991023.1 CDS Rpal_2025 NC_011004.1 2197148 2199214 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:blr2506 chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2197148..2199214 Rhodopseudomonas palustris TIE-1 6409685 YP_001991024.1 CDS Rpal_2026 NC_011004.1 2199525 2199866 D hypothetical protein 2199525..2199866 Rhodopseudomonas palustris TIE-1 6409686 YP_001991025.1 CDS Rpal_2027 NC_011004.1 2200020 2202329 D PFAM: TonB-dependent receptor; KEGG: azc:AZC_1341 TonB dependent receptor; TonB-dependent receptor 2200020..2202329 Rhodopseudomonas palustris TIE-1 6409687 YP_001991026.1 CDS Rpal_2028 NC_011004.1 2202497 2202940 D KEGG: ngo:NGO1701 hypothetical protein; hypothetical protein 2202497..2202940 Rhodopseudomonas palustris TIE-1 6409688 YP_001991027.1 CDS Rpal_2029 NC_011004.1 2203032 2203271 R PFAM: type IV pilus assembly PilZ; KEGG: nha:Nham_1523 hypothetical protein; type IV pilus assembly PilZ complement(2203032..2203271) Rhodopseudomonas palustris TIE-1 6409689 YP_001991028.1 CDS Rpal_2030 NC_011004.1 2203404 2204762 R KEGG: bja:bll3046 hypothetical protein; hypothetical protein complement(2203404..2204762) Rhodopseudomonas palustris TIE-1 6409690 YP_001991029.1 CDS Rpal_2031 NC_011004.1 2204868 2205128 R KEGG: bbt:BBta_5165 hypothetical protein; hypothetical protein complement(2204868..2205128) Rhodopseudomonas palustris TIE-1 6409691 YP_001991030.1 CDS Rpal_2032 NC_011004.1 2205195 2205845 R PFAM: peptidase C15 pyroglutamyl peptidase I; KEGG: nwi:Nwi_2241 peptidase C15, pyroglutamyl peptidase I; peptidase C15 pyroglutamyl peptidase I complement(2205195..2205845) Rhodopseudomonas palustris TIE-1 6409692 YP_001991031.1 CDS Rpal_2033 NC_011004.1 2205842 2206831 R functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase complement(2205842..2206831) Rhodopseudomonas palustris TIE-1 6409693 YP_001991032.1 CDS Rpal_2034 NC_011004.1 2206918 2207247 R KEGG: nha:Nham_0910 carbonic anhydrase; carbonic anhydrase complement(2206918..2207247) Rhodopseudomonas palustris TIE-1 6409694 YP_001991033.1 CDS Rpal_2035 NC_011004.1 2207238 2207510 R KEGG: nha:Nham_0910 carbonic anhydrase; carbonic anhydrase complement(2207238..2207510) Rhodopseudomonas palustris TIE-1 6409695 YP_001991034.1 CDS Rpal_2036 NC_011004.1 2207709 2208494 R KEGG: bja:bll3052 hypothetical protein; hypothetical protein complement(2207709..2208494) Rhodopseudomonas palustris TIE-1 6409696 YP_001991035.1 CDS Rpal_2037 NC_011004.1 2208555 2208965 R PFAM: PilT protein domain protein; KEGG: rca:Rcas_4442 PilT protein domain protein; PilT protein domain-containing protein complement(2208555..2208965) Rhodopseudomonas palustris TIE-1 6409697 YP_001991036.1 CDS Rpal_2038 NC_011004.1 2208962 2209219 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: mpt:Mpe_A3784 hypothetical protein; prevent-host-death family protein complement(2208962..2209219) Rhodopseudomonas palustris TIE-1 6409698 YP_001991037.1 CDS Rpal_2039 NC_011004.1 2209283 2211442 R MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase complement(2209283..2211442) Rhodopseudomonas palustris TIE-1 6409699 YP_001991038.1 CDS Rpal_2040 NC_011004.1 2211505 2211969 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bja:bll3055 hypothetical protein; glutathione-dependent formaldehyde-activating protein complement(2211505..2211969) Rhodopseudomonas palustris TIE-1 6409700 YP_001991039.1 CDS Rpal_2041 NC_011004.1 2211966 2213837 R PFAM: methylmalonyl-CoA mutase; KEGG: bja:bll3056 probable methylmalonyl-CoA mutase small subunit; methylmalonyl-CoA mutase complement(2211966..2213837) Rhodopseudomonas palustris TIE-1 6409701 YP_001991040.1 CDS Rpal_2042 NC_011004.1 2213995 2214486 R KEGG: nha:Nham_2635 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(2213995..2214486) Rhodopseudomonas palustris TIE-1 6409702 YP_001991041.1 CDS Rpal_2043 NC_011004.1 2214488 2214853 R TIGRFAM: dihydroneopterin aldolase; KEGG: bra:BRADO2684 dihydroneopterin aldolase (DhnA); dihydroneopterin aldolase complement(2214488..2214853) Rhodopseudomonas palustris TIE-1 6409703 YP_001991042.1 CDS Rpal_2044 NC_011004.1 2214850 2215707 R KEGG: nha:Nham_2633 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(2214850..2215707) Rhodopseudomonas palustris TIE-1 6409704 YP_001991043.1 CDS Rpal_2045 NC_011004.1 2215773 2216180 R KEGG: nwi:Nwi_2232 hypothetical protein; hypothetical protein complement(2215773..2216180) Rhodopseudomonas palustris TIE-1 6409705 YP_001991044.1 CDS Rpal_2046 NC_011004.1 2216198 2216566 R KEGG: bja:bll3061 hypothetical protein; hypothetical protein complement(2216198..2216566) Rhodopseudomonas palustris TIE-1 6409706 YP_001991045.1 CDS Rpal_2047 NC_011004.1 2216903 2218513 D PFAM: protein of unknown function DUF853 NPT hydrolase KEGG: bra:BRADO2688 conserved hypothetical protein; ATPase; hypothetical protein 2216903..2218513 Rhodopseudomonas palustris TIE-1 6409707 YP_001991046.1 CDS Rpal_2048 NC_011004.1 2218811 2220217 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: nha:Nham_2629 hypothetical protein; hypothetical protein 2218811..2220217 Rhodopseudomonas palustris TIE-1 6409708 YP_001991047.1 CDS Rpal_2049 NC_011004.1 2220561 2222855 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dac:Daci_1878 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2220561..2222855 Rhodopseudomonas palustris TIE-1 6409709 YP_001991048.1 CDS Rpal_2050 NC_011004.1 2222969 2223703 D KEGG: dac:Daci_3884 hypothetical protein; hypothetical protein 2222969..2223703 Rhodopseudomonas palustris TIE-1 6409710 YP_001991049.1 CDS Rpal_2051 NC_011004.1 2223700 2223981 D KEGG: dac:Daci_0273 hypothetical protein; hypothetical protein 2223700..2223981 Rhodopseudomonas palustris TIE-1 6409711 YP_001991050.1 CDS Rpal_2052 NC_011004.1 2223995 2225617 D KEGG: dac:Daci_0272 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein 2223995..2225617 Rhodopseudomonas palustris TIE-1 6409712 YP_001991051.1 CDS Rpal_2053 NC_011004.1 2225614 2225901 D KEGG: xcb:XC_0260 hypothetical protein; hypothetical protein 2225614..2225901 Rhodopseudomonas palustris TIE-1 6409713 YP_001991052.1 CDS Rpal_2054 NC_011004.1 2225941 2227938 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_5044 methyl-accepting chemotaxis receptor/sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2225941..2227938) Rhodopseudomonas palustris TIE-1 6409714 YP_001991053.1 CDS Rpal_2055 NC_011004.1 2228395 2229177 R PFAM: class II aldolase/adducin family protein; KEGG: bra:BRADO2701 hypothetical protein; aldolase II superfamily protein complement(2228395..2229177) Rhodopseudomonas palustris TIE-1 6409715 YP_001991054.1 CDS Rpal_2056 NC_011004.1 2229443 2230321 D KEGG: bja:blr3067 hypothetical protein; hypothetical protein 2229443..2230321 Rhodopseudomonas palustris TIE-1 6409716 YP_001991055.1 CDS Rpal_2057 NC_011004.1 2230509 2230925 D PFAM: ROSMUCR transcriptional regulator; KEGG: nha:Nham_2627 transcriptional regulator, MucR family; MucR family transcriptional regulator 2230509..2230925 Rhodopseudomonas palustris TIE-1 6409717 YP_001991056.1 CDS Rpal_2058 NC_011004.1 2230933 2231673 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_3419 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2230933..2231673) Rhodopseudomonas palustris TIE-1 6409718 YP_001991057.1 CDS Rpal_2059 NC_011004.1 2231751 2232386 D PFAM: regulatory protein TetR; KEGG: rle:RL0480 TetR family transcriptional regulator; TetR family transcriptional regulator 2231751..2232386 Rhodopseudomonas palustris TIE-1 6409719 YP_001991058.1 CDS Rpal_2060 NC_011004.1 2232508 2233119 D KEGG: nwi:Nwi_2226 ATPase involved in DNA replication initiation; DNA replication initiation ATPase 2232508..2233119 Rhodopseudomonas palustris TIE-1 6409720 YP_001991059.1 CDS Rpal_2061 NC_011004.1 2233149 2233577 R PFAM: Fe-S metabolism associated SufE; KEGG: bbt:BBta_3043 SufE-like protein; Fe-S metabolism associated SufE complement(2233149..2233577) Rhodopseudomonas palustris TIE-1 6409721 YP_001991060.1 CDS Rpal_2062 NC_011004.1 2233693 2234115 R KEGG: bra:BRADO2707 hypothetical protein; hypothetical protein complement(2233693..2234115) Rhodopseudomonas palustris TIE-1 6409722 YP_001991061.1 CDS Rpal_2063 NC_011004.1 2234522 2236354 D KEGG: nha:Nham_2623 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 2234522..2236354 Rhodopseudomonas palustris TIE-1 6409723 YP_001991062.1 CDS Rpal_2064 NC_011004.1 2236431 2237132 D PFAM: peptidoglycan-binding domain 1 protein; KEGG: bja:blr3072 hypothetical protein; peptidoglycan-binding domain 1 protein 2236431..2237132 Rhodopseudomonas palustris TIE-1 6409724 YP_001991063.1 CDS Rpal_2065 NC_011004.1 2237285 2237626 D PFAM: protein of unknown function DUF1491; KEGG: bja:blr3074 hypothetical protein; hypothetical protein 2237285..2237626 Rhodopseudomonas palustris TIE-1 6409725 YP_001991064.1 CDS Rpal_2066 NC_011004.1 2237801 2238775 R KEGG: nha:Nham_1399 hypothetical protein; hypothetical protein complement(2237801..2238775) Rhodopseudomonas palustris TIE-1 6409726 YP_001991065.1 CDS Rpal_2067 NC_011004.1 2238927 2239997 R PFAM: polysaccharide deacetylase; KEGG: nha:Nham_1255 polysaccharide deacetylase; polysaccharide deacetylase complement(2238927..2239997) Rhodopseudomonas palustris TIE-1 6409727 YP_001991066.1 CDS Rpal_2068 NC_011004.1 2240077 2240607 R KEGG: bja:blr5578 hypothetical protein; hypothetical protein complement(2240077..2240607) Rhodopseudomonas palustris TIE-1 6409728 YP_001991067.1 CDS Rpal_2069 NC_011004.1 2240787 2240987 D KEGG: bbt:BBta_3049 hypothetical protein; hypothetical protein 2240787..2240987 Rhodopseudomonas palustris TIE-1 6409729 YP_001991068.1 CDS Rpal_2070 NC_011004.1 2241005 2241787 D KEGG: bbt:BBta_3050 exported protein of unknown function; hypothetical protein 2241005..2241787 Rhodopseudomonas palustris TIE-1 6409730 YP_001991069.1 CDS Rpal_2071 NC_011004.1 2241794 2242360 R KEGG: bra:BRADO2716 conserved hypothetical protein; signal peptide; hypothetical protein complement(2241794..2242360) Rhodopseudomonas palustris TIE-1 6409731 YP_001991070.1 CDS Rpal_2072 NC_011004.1 2242357 2242935 R PFAM: protein of unknown function DUF1214; KEGG: bra:BRADO2717 conserved hypothetical protein; signal peptide; hypothetical protein complement(2242357..2242935) Rhodopseudomonas palustris TIE-1 6409732 YP_001991071.1 CDS Rpal_2073 NC_011004.1 2242979 2245255 R KEGG: bra:BRADO2718 penicillin-binding protein (MrcA-like); TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein complement(2242979..2245255) Rhodopseudomonas palustris TIE-1 6409733 YP_001991072.1 CDS Rpal_2074 NC_011004.1 2245525 2246037 D PFAM: protein of unknown function UPF0153; KEGG: bja:blr3103 hypothetical protein; hypothetical protein 2245525..2246037 Rhodopseudomonas palustris TIE-1 6409734 YP_001991073.1 CDS Rpal_2075 NC_011004.1 2246091 2246834 D PFAM: protein of unknown function DUF81; KEGG: bcm:Bcenmc03_5380 protein of unknown function DUF81; hypothetical protein 2246091..2246834 Rhodopseudomonas palustris TIE-1 6409735 YP_001991074.1 CDS Rpal_2076 NC_011004.1 2247130 2247645 R PFAM: regulatory protein MarR; KEGG: bja:bll1047 transcriptional regulatory protein; MarR family transcriptional regulator complement(2247130..2247645) Rhodopseudomonas palustris TIE-1 6409736 YP_001991075.1 CDS Rpal_2077 NC_011004.1 2247725 2248963 D PFAM: cytochrome P450; KEGG: bbt:BBta_0729 cytochrome P450; cytochrome P450 2247725..2248963 Rhodopseudomonas palustris TIE-1 6409737 YP_001991076.1 CDS Rpal_2078 NC_011004.1 2248973 2249293 D PFAM: ferredoxin; KEGG: bja:blr1049 ferrodoxin; ferredoxin 2248973..2249293 Rhodopseudomonas palustris TIE-1 6409738 YP_001991077.1 CDS Rpal_2079 NC_011004.1 2249369 2250583 D KEGG: bja:blr1050 branched chain amino acid transport system substrate binding protein; branched chain amino acid ABC transporter substrate-binding protein 2249369..2250583 Rhodopseudomonas palustris TIE-1 6409739 YP_001991078.1 CDS Rpal_2080 NC_011004.1 2250873 2251079 R KEGG: bpt:Bpet2624 hypothetical protein; hypothetical protein complement(2250873..2251079) Rhodopseudomonas palustris TIE-1 6409740 YP_001991079.1 CDS Rpal_2081 NC_011004.1 2251076 2252221 R PFAM: PepSY-associated TM helix domain protein; KEGG: bbt:BBta_2666 uncharacterized iron-regulated membrane protein; PepSY-associated TM helix domain-containing protein complement(2251076..2252221) Rhodopseudomonas palustris TIE-1 6409741 YP_001991080.1 CDS Rpal_2082 NC_011004.1 2252218 2254533 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rru:Rru_A2395 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(2252218..2254533) Rhodopseudomonas palustris TIE-1 6409742 YP_001991081.1 CDS Rpal_2084 NC_011004.1 2256285 2257460 R PFAM: beta-lactamase; KEGG: bra:BRADO4091 beta-lactamase family protein; 6-aminohexanoate-dimer hydrolase; 6-aminohexanoate-dimer hydrolase complement(2256285..2257460) Rhodopseudomonas palustris TIE-1 6409744 YP_001991082.1 CDS Rpal_2085 NC_011004.1 2257576 2258643 R PFAM: Choloylglycine hydrolase; KEGG: oan:Oant_1699 choloylglycine hydrolase; Choloylglycine hydrolase complement(2257576..2258643) Rhodopseudomonas palustris TIE-1 6409745 YP_001991083.1 CDS Rpal_2086 NC_011004.1 2258799 2260442 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bbt:BBta_3058 permease of the major facilitator superfamily; major facilitator superfamily protein 2258799..2260442 Rhodopseudomonas palustris TIE-1 6409746 YP_001991084.1 CDS Rpal_2087 NC_011004.1 2260566 2261966 D KEGG: nha:Nham_0909 hypothetical protein; hypothetical protein 2260566..2261966 Rhodopseudomonas palustris TIE-1 6409747 YP_001991085.1 CDS Rpal_2088 NC_011004.1 2262078 2262242 D PFAM: Flp/Fap pilin component; KEGG: bja:bsl1442 pilus assembly protein pilin subunit; Flp/Fap pilin component 2262078..2262242 Rhodopseudomonas palustris TIE-1 6409748 YP_001991086.1 CDS Rpal_2089 NC_011004.1 2262535 2264088 D KEGG: ppg:PputGB1_1968 major facilitator superfamily MFS_1; hypothetical protein 2262535..2264088 Rhodopseudomonas palustris TIE-1 6409749 YP_001991087.1 CDS Rpal_2090 NC_011004.1 2264366 2264512 D KEGG: bbt:BBta_3066 hypothetical protein; hypothetical protein 2264366..2264512 Rhodopseudomonas palustris TIE-1 6409750 YP_001991088.1 CDS Rpal_2091 NC_011004.1 2264750 2266429 D KEGG: bbt:BBta_6268 methyl-accepting chemotaxis receptor/sensory transducer with PAS domain; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 2264750..2266429 Rhodopseudomonas palustris TIE-1 6409751 YP_001991089.1 CDS Rpal_2092 NC_011004.1 2266569 2267744 D TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: nha:Nham_1410 phage portal protein, HK97; phage portal protein, HK97 family 2266569..2267744 Rhodopseudomonas palustris TIE-1 6409752 YP_001991090.1 CDS Rpal_2093 NC_011004.1 2267770 2267970 D KEGG: nwi:Nwi_1162 hypothetical protein; hypothetical protein 2267770..2267970 Rhodopseudomonas palustris TIE-1 6409753 YP_001991091.1 CDS Rpal_2094 NC_011004.1 2267975 2268151 D KEGG: nha:Nham_1412 hypothetical protein; hypothetical protein 2267975..2268151 Rhodopseudomonas palustris TIE-1 6409754 YP_001991092.1 CDS Rpal_2095 NC_011004.1 2268276 2269022 D TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: nha:Nham_1413 peptidase U35, phage prohead HK97; phage prohead protease, HK97 family 2268276..2269022 Rhodopseudomonas palustris TIE-1 6409755 YP_001991093.1 CDS Rpal_2096 NC_011004.1 2269153 2270409 D TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: nha:Nham_1415 phage major capsid protein, HK97; phage major capsid protein, HK97 family 2269153..2270409 Rhodopseudomonas palustris TIE-1 6409756 YP_001991094.1 CDS Rpal_2097 NC_011004.1 2270689 2271582 D KEGG: nwi:Nwi_1168 hypothetical protein; hypothetical protein 2270689..2271582 Rhodopseudomonas palustris TIE-1 6409757 YP_001991095.1 CDS Rpal_2098 NC_011004.1 2271579 2271950 D KEGG: mes:Meso_2040 hypothetical protein; hypothetical protein 2271579..2271950 Rhodopseudomonas palustris TIE-1 6409758 YP_001991096.1 CDS Rpal_2099 NC_011004.1 2272138 2273175 R PFAM: Appr-1-p processing domain protein; KEGG: tbd:Tbd_1489 Appr-1-p processing protein; Appr-1-p processing protein complement(2272138..2273175) Rhodopseudomonas palustris TIE-1 6409759 YP_001991097.1 CDS Rpal_2100 NC_011004.1 2273187 2273858 R KEGG: tbd:Tbd_1490 hypothetical protein; hypothetical protein complement(2273187..2273858) Rhodopseudomonas palustris TIE-1 6409760 YP_001991098.1 CDS Rpal_2101 NC_011004.1 2274202 2275128 D KEGG: nha:Nham_1407 hypothetical protein; hypothetical protein 2274202..2275128 Rhodopseudomonas palustris TIE-1 6409761 YP_001991099.1 CDS Rpal_2102 NC_011004.1 2275205 2276365 D PFAM: protein of unknown function DUF264; KEGG: azc:AZC_1105 hypothetical protein; hypothetical protein 2275205..2276365 Rhodopseudomonas palustris TIE-1 6409762 YP_001991100.1 CDS Rpal_2103 NC_011004.1 2276463 2276747 D KEGG: bra:BRADO3033 conserved hypothetical protein; signal peptide; hypothetical protein 2276463..2276747 Rhodopseudomonas palustris TIE-1 6409763 YP_001991101.1 CDS Rpal_2104 NC_011004.1 2276767 2277075 R KEGG: nha:Nham_2225 hypothetical protein; hypothetical protein complement(2276767..2277075) Rhodopseudomonas palustris TIE-1 6409764 YP_001991102.1 CDS Rpal_2105 NC_011004.1 2277158 2277925 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: bbt:BBta_0650 serine protease; peptidase S1 and S6 chymotrypsin/Hap complement(2277158..2277925) Rhodopseudomonas palustris TIE-1 6409765 YP_001991103.1 CDS Rpal_2106 NC_011004.1 2277990 2278550 D KEGG: nha:Nham_1417 phage conserved hypothetical protein, phiE125 gp8; phage protein, phiE125 gp8 2277990..2278550 Rhodopseudomonas palustris TIE-1 6409766 YP_001991104.1 CDS Rpal_2107 NC_011004.1 2278547 2278867 D TIGRFAM: phage head-tail adaptor; KEGG: xau:Xaut_3159 phage head-tail adaptor; phage head-tail adaptor 2278547..2278867 Rhodopseudomonas palustris TIE-1 6409767 YP_001991105.1 CDS Rpal_2108 NC_011004.1 2278864 2279274 D KEGG: nha:Nham_1418 gene transfer agent (GTA) like protein; gene transfer agent (GTA) like protein 2278864..2279274 Rhodopseudomonas palustris TIE-1 6409768 YP_001991106.1 CDS Rpal_2109 NC_011004.1 2279287 2279694 D TIGRFAM: phage major tail protein, TP901-1 family; KEGG: nha:Nham_1419 phage major tail protein, TP901-1; phage major tail protein, TP901-1 family 2279287..2279694 Rhodopseudomonas palustris TIE-1 6409769 YP_001991107.1 CDS Rpal_2110 NC_011004.1 2279704 2280021 D KEGG: nha:Nham_1420 gene transfer agent (GTA) like protein; gene transfer agent (GTA) like protein 2279704..2280021 Rhodopseudomonas palustris TIE-1 6409770 YP_001991108.1 CDS Rpal_2111 NC_011004.1 2280018 2280221 D PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1176 phage conserved hypothetical protein; hypothetical protein 2280018..2280221 Rhodopseudomonas palustris TIE-1 6409771 YP_001991109.1 CDS Rpal_2112 NC_011004.1 2280218 2280811 D KEGG: nha:Nham_1422 gene transfer agent (GTA) like protein; gene transfer agent (GTA) like protein 2280218..2280811 Rhodopseudomonas palustris TIE-1 6409772 YP_001991110.1 CDS Rpal_2113 NC_011004.1 2280950 2281588 D PFAM: conserved hypothetical protein; KEGG: nha:Nham_1423 hypothetical protein; hypothetical protein 2280950..2281588 Rhodopseudomonas palustris TIE-1 6409773 YP_001991111.1 CDS Rpal_2114 NC_011004.1 2281834 2283228 D hypothetical protein 2281834..2283228 Rhodopseudomonas palustris TIE-1 6409774 YP_001991112.1 CDS Rpal_2115 NC_011004.1 2283582 2284493 D PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1179 hypothetical protein; hypothetical protein 2283582..2284493 Rhodopseudomonas palustris TIE-1 6409775 YP_001991113.1 CDS Rpal_2116 NC_011004.1 2284533 2284985 D TIGRFAM: phage cell wall peptidase, NlpC/P60 family; KEGG: nwi:Nwi_1180 phage cell wall peptidase, NlpC/P60; Nlp family transcriptional regulator 2284533..2284985 Rhodopseudomonas palustris TIE-1 6409776 YP_001991114.1 CDS Rpal_2117 NC_011004.1 2285050 2285475 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: mrd:Mrad2831_2003 glutathione-dependent formaldehyde-activating GFA; glutathione-dependent formaldehyde-activating protein 2285050..2285475 Rhodopseudomonas palustris TIE-1 6409777 YP_001991115.1 CDS Rpal_2118 NC_011004.1 2285514 2285981 R hypothetical protein complement(2285514..2285981) Rhodopseudomonas palustris TIE-1 6409778 YP_001991116.1 CDS Rpal_2119 NC_011004.1 2286135 2286608 D PFAM: regulatory protein MarR; KEGG: mex:Mext_1446 regulatory protein MarR; MarR family transcriptional regulator 2286135..2286608 Rhodopseudomonas palustris TIE-1 6409779 YP_001991117.1 CDS Rpal_2120 NC_011004.1 2286610 2287062 D KEGG: mlo:mlr5153 hypothetical protein; hypothetical protein 2286610..2287062 Rhodopseudomonas palustris TIE-1 6409780 YP_001991118.1 CDS Rpal_2121 NC_011004.1 2287089 2287634 D PFAM: cytochrome B561; KEGG: rle:RL3155 cytochrome b561; cytochrome B561 2287089..2287634 Rhodopseudomonas palustris TIE-1 6409781 YP_001991119.1 CDS Rpal_2122 NC_011004.1 2287789 2291661 D KEGG: nha:Nham_1426 gene transfer agent (GTA) orfg15, like protein; hypothetical protein 2287789..2291661 Rhodopseudomonas palustris TIE-1 6409782 YP_001991120.1 CDS Rpal_2123 NC_011004.1 2291671 2293038 D KEGG: mrd:Mrad2831_4981 hypothetical protein; hypothetical protein 2291671..2293038 Rhodopseudomonas palustris TIE-1 6409783 YP_001991121.1 CDS Rpal_2124 NC_011004.1 2293254 2294015 D KEGG: nha:Nham_1429 glycohydrolase; chitinase-like protein 2293254..2294015 Rhodopseudomonas palustris TIE-1 6409784 YP_001991122.1 CDS Rpal_2125 NC_011004.1 2294018 2294590 D KEGG: azc:AZC_2138 hypothetical protein; hypothetical protein 2294018..2294590 Rhodopseudomonas palustris TIE-1 6409785 YP_001991123.1 CDS Rpal_2126 NC_011004.1 2294702 2295376 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_1433 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 2294702..2295376 Rhodopseudomonas palustris TIE-1 6409786 YP_001991124.1 CDS Rpal_2127 NC_011004.1 2295392 2296783 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: nha:Nham_1434 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2295392..2296783 Rhodopseudomonas palustris TIE-1 6409787 YP_001991125.1 CDS Rpal_2128 NC_011004.1 2296880 2297344 D KEGG: nha:Nham_1435 LipA a lipoprotein; LipA a lipoprotein 2296880..2297344 Rhodopseudomonas palustris TIE-1 6409788 YP_001991126.1 CDS Rpal_2129 NC_011004.1 2297567 2298970 D KEGG: nha:Nham_1436 hypothetical protein; hypothetical protein 2297567..2298970 Rhodopseudomonas palustris TIE-1 6409789 YP_001991127.1 CDS Rpal_2130 NC_011004.1 2299133 2300239 D TIGRFAM: cytochrome C-type biogenesis protein CcmI; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: bbt:BBta_3071 cytochrome C-type biogenesis protein CycH; cytochrome C-type biogenesis protein CcmI 2299133..2300239 Rhodopseudomonas palustris TIE-1 6409790 YP_001991128.1 CDS Rpal_2131 NC_011004.1 2300353 2300856 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome C maturation system; periplasmic protein anchored to the inner membrane; cytochrome C-type biogenesis protein CcmE 2300353..2300856 Rhodopseudomonas palustris TIE-1 6409791 YP_001991129.1 CDS Rpal_2132 NC_011004.1 2300853 2302835 D TIGRFAM: cytochrome C-type biogenesis protein CcmF; PFAM: cytochrome C assembly protein; KEGG: nha:Nham_1439 cytochrome C-type biogenesis protein CcmF; cytochrome C-type biogenesis protein CcmF 2300853..2302835 Rhodopseudomonas palustris TIE-1 6409792 YP_001991130.1 CDS Rpal_2133 NC_011004.1 2302849 2303346 D PFAM: cytochrome C biogenesis protein; KEGG: bja:blr3128 cytochrome C-type biogenesis protein; cytochrome C biogenesis protein 2302849..2303346 Rhodopseudomonas palustris TIE-1 6409793 YP_001991131.1 CDS amiF NC_011004.1 2303657 2304679 R formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate; formamidase complement(2303657..2304679) Rhodopseudomonas palustris TIE-1 6409794 YP_001991132.1 CDS Rpal_2136 NC_011004.1 2305533 2306999 R PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A1114 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(2305533..2306999) Rhodopseudomonas palustris TIE-1 6409796 YP_001991133.1 CDS Rpal_2137 NC_011004.1 2307074 2307925 D SMART: helix-turn-helix domain protein; KEGG: rru:Rru_A1115 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein 2307074..2307925 Rhodopseudomonas palustris TIE-1 6409797 YP_001991134.1 CDS Rpal_2138 NC_011004.1 2308089 2308577 R KEGG: pna:Pnap_2337 hypothetical protein; hypothetical protein complement(2308089..2308577) Rhodopseudomonas palustris TIE-1 6409798 YP_001991135.1 CDS Rpal_2139 NC_011004.1 2308631 2309539 R PFAM: ferredoxin; KEGG: rsh:Rsph17029_0397 ferredoxin; ferredoxin complement(2308631..2309539) Rhodopseudomonas palustris TIE-1 6409799 YP_001991136.1 CDS Rpal_2140 NC_011004.1 2309908 2311479 D KEGG: bra:BRADO2741 serine protease do-like precursor; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 2309908..2311479 Rhodopseudomonas palustris TIE-1 6409800 YP_001991137.1 CDS Rpal_2141 NC_011004.1 2311711 2312436 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bbt:BBta_3078 two-component transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis; winged helix family two component transcriptional regulator 2311711..2312436 Rhodopseudomonas palustris TIE-1 6409801 YP_001991138.1 CDS Rpal_2142 NC_011004.1 2312671 2313957 D PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; KEGG: bbt:BBta_0969 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2312671..2313957 Rhodopseudomonas palustris TIE-1 6409802 YP_001991139.1 CDS Rpal_2143 NC_011004.1 2314169 2315617 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bbt:BBta_3085 two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2314169..2315617 Rhodopseudomonas palustris TIE-1 6409803 YP_001991140.1 CDS Rpal_2144 NC_011004.1 2315614 2318586 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 2315614..2318586 Rhodopseudomonas palustris TIE-1 6409804 YP_001991141.1 CDS Rpal_2145 NC_011004.1 2318645 2318896 R KEGG: bja:bll6166 hypothetical protein; hypothetical protein complement(2318645..2318896) Rhodopseudomonas palustris TIE-1 6409805 YP_001991142.1 CDS Rpal_2146 NC_011004.1 2318997 2320019 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mex:Mext_2407 helix-turn-helix-domain containing protein AraC type; AraC family transcriptional regulator complement(2318997..2320019) Rhodopseudomonas palustris TIE-1 6409806 YP_001991143.1 CDS Rpal_2147 NC_011004.1 2320493 2323897 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Autotransporter beta- domain protein; KEGG: azc:AZC_3227 outer membrane autotransporter barrel precursor; outer membrane autotransporter barrel domain-containing protein 2320493..2323897 Rhodopseudomonas palustris TIE-1 6409807 YP_001991144.1 CDS Rpal_2148 NC_011004.1 2324204 2326513 R KEGG: bbt:BBta_3094 two-component sensor histidine kinase with a ATP-binding domain (C-term); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase complement(2324204..2326513) Rhodopseudomonas palustris TIE-1 6409808 YP_001991145.1 CDS Rpal_2149 NC_011004.1 2326729 2328111 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: nha:Nham_1450 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(2326729..2328111) Rhodopseudomonas palustris TIE-1 6409809 YP_001991146.1 CDS Rpal_2150 NC_011004.1 2328242 2329210 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bra:BRADO4966 NADPH quinone oxidoreductase; alcohol dehydrogenase zinc-binding domain-containing protein complement(2328242..2329210) Rhodopseudomonas palustris TIE-1 6409810 YP_001991147.1 CDS Rpal_2151 NC_011004.1 2329253 2330251 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: bja:bll3143 hypothetical protein; 2-nitropropane dioxygenase complement(2329253..2330251) Rhodopseudomonas palustris TIE-1 6409811 YP_001991148.1 CDS Rpal_2152 NC_011004.1 2330489 2331274 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:bll3146 hypothetical protein; fumarylacetoacetate (FAA) hydrolase complement(2330489..2331274) Rhodopseudomonas palustris TIE-1 6409812 YP_001991149.1 CDS Rpal_2153 NC_011004.1 2331430 2332410 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(2331430..2332410) Rhodopseudomonas palustris TIE-1 6409813 YP_001991150.1 CDS Rpal_2154 NC_011004.1 2332511 2333803 R PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_3099 oxalate/formate antiporter; major facilitator superfamily protein complement(2332511..2333803) Rhodopseudomonas palustris TIE-1 6409814 YP_001991151.1 CDS Rpal_2155 NC_011004.1 2333972 2335249 R catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; formyl-coenzyme A transferase complement(2333972..2335249) Rhodopseudomonas palustris TIE-1 6409815 YP_001991152.1 CDS Rpal_2156 NC_011004.1 2335366 2336097 R PFAM: regulatory protein GntR HTH; GntR domain protein; hypothetical protein; KEGG: bja:bll3158 transcriptional regulatory protein; GntR family transcriptional regulator complement(2335366..2336097) Rhodopseudomonas palustris TIE-1 6409816 YP_001991153.1 CDS Rpal_2157 NC_011004.1 2336407 2336619 R hypothetical protein complement(2336407..2336619) Rhodopseudomonas palustris TIE-1 6409817 YP_001991154.1 CDS Rpal_2158 NC_011004.1 2336649 2337575 D possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 2336649..2337575 Rhodopseudomonas palustris TIE-1 6409818 YP_001991155.1 CDS Rpal_2159 NC_011004.1 2337572 2338336 D Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 2337572..2338336 Rhodopseudomonas palustris TIE-1 6409819 YP_001991156.1 CDS Rpal_2160 NC_011004.1 2338341 2338649 D PFAM: coenzyme PQQ synthesis D; KEGG: bra:BRADO5796 coenzyme PQQ synthesis protein D (pyrroloquinoline quinone biosynthesis protein D)(PqqD); coenzyme PQQ synthesis D 2338341..2338649 Rhodopseudomonas palustris TIE-1 6409820 YP_001991157.1 CDS Rpal_2161 NC_011004.1 2338646 2339824 D KEGG: bbt:BBta_6304 pyrroloquinoline quinone biosynthesis protein PqqE; TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; pyrroloquinoline quinone biosynthesis protein PqqE 2338646..2339824 Rhodopseudomonas palustris TIE-1 6409821 YP_001991158.1 CDS Rpal_2162 NC_011004.1 2340006 2340881 R PFAM: secretion protein HlyD family protein; KEGG: bja:blr3854 hypothetical protein; secretion protein HlyD family protein complement(2340006..2340881) Rhodopseudomonas palustris TIE-1 6409822 YP_001991159.1 CDS Rpal_2163 NC_011004.1 2340893 2341105 R PFAM: protein of unknown function DUF1656; KEGG: rme:Rmet_4792 protein of unknown function DUF1656; hypothetical protein complement(2340893..2341105) Rhodopseudomonas palustris TIE-1 6409823 YP_001991160.1 CDS Rpal_2164 NC_011004.1 2341102 2343114 R PFAM: fusaric acid resistance protein conserved region; KEGG: bra:BRADO4669 efflux transporter permease; fusaric acid resistance pump; fusaric acid resistance protein complement(2341102..2343114) Rhodopseudomonas palustris TIE-1 6409824 YP_001991161.1 CDS Rpal_2165 NC_011004.1 2343280 2343966 D PFAM: regulatory protein TetR; KEGG: eci:UTI89_C4911 UidR transriptional regulator; TetR family transcriptional regulator 2343280..2343966 Rhodopseudomonas palustris TIE-1 6409825 YP_001991162.1 CDS Rpal_2166 NC_011004.1 2344103 2345212 R TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_5970 alcohol dehydrogenase class III; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase complement(2344103..2345212) Rhodopseudomonas palustris TIE-1 6409826 YP_001991163.1 CDS Rpal_2167 NC_011004.1 2345311 2346834 R SMART: ATPase AAA; KEGG: bbt:BBta_6263 hypothetical protein; ATPase AAA complement(2345311..2346834) Rhodopseudomonas palustris TIE-1 6409827 YP_001991164.1 CDS Rpal_2168 NC_011004.1 2346961 2347977 R PFAM: monooxygenase; KEGG: bmf:BAB1_2052 bacterial luciferase; monooxygenase complement(2346961..2347977) Rhodopseudomonas palustris TIE-1 6409828 YP_001991165.1 CDS Rpal_2169 NC_011004.1 2348089 2348712 R PFAM: regulatory protein TetR; KEGG: xau:Xaut_4925 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2348089..2348712) Rhodopseudomonas palustris TIE-1 6409829 YP_001991166.1 CDS Rpal_2170 NC_011004.1 2348792 2349880 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO1729 component of multidrug efflux system (RND family); RND family efflux transporter MFP subunit 2348792..2349880 Rhodopseudomonas palustris TIE-1 6409830 YP_001991167.1 CDS Rpal_2171 NC_011004.1 2349877 2350950 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_2040 component of multidrug efflux system (RND family); RND family efflux transporter MFP subunit 2349877..2350950 Rhodopseudomonas palustris TIE-1 6409831 YP_001991168.1 CDS Rpal_2172 NC_011004.1 2350947 2353997 D PFAM: acriflavin resistance protein; KEGG: bbt:BBta_2039 component of multidrug efflux system (RND family); acriflavin resistance protein 2350947..2353997 Rhodopseudomonas palustris TIE-1 6409832 YP_001991169.1 CDS Rpal_2173 NC_011004.1 2353999 2354280 D hypothetical protein 2353999..2354280 Rhodopseudomonas palustris TIE-1 6409833 YP_001991170.1 CDS Rpal_2174 NC_011004.1 2354312 2355502 D PFAM: Patatin; KEGG: bja:blr4684 hypothetical protein; patatin 2354312..2355502 Rhodopseudomonas palustris TIE-1 6409834 YP_001991171.1 CDS Rpal_2175 NC_011004.1 2355561 2356118 D KEGG: bra:BRADO1664 hypothetical protein; hypothetical protein 2355561..2356118 Rhodopseudomonas palustris TIE-1 6409835 YP_001991172.1 CDS Rpal_2176 NC_011004.1 2356144 2358132 R PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; KEGG: ret:RHE_CH02959 probable adenylate cyclase protein; adenylate/guanylate cyclase with integral membrane sensor complement(2356144..2358132) Rhodopseudomonas palustris TIE-1 6409836 YP_001991173.1 CDS Rpal_2177 NC_011004.1 2358399 2359031 R PFAM: regulatory protein TetR; KEGG: psp:PSPPH_3268 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2358399..2359031) Rhodopseudomonas palustris TIE-1 6409837 YP_001991174.1 CDS Rpal_2178 NC_011004.1 2359195 2360310 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO1901 component of multidrug efflux system; signal peptide; RND family efflux transporter MFP subunit 2359195..2360310 Rhodopseudomonas palustris TIE-1 6409838 YP_001991175.1 CDS Rpal_2179 NC_011004.1 2360310 2363465 D PFAM: acriflavin resistance protein; KEGG: nha:Nham_1082 acriflavin resistance protein; acriflavin resistance protein 2360310..2363465 Rhodopseudomonas palustris TIE-1 6409839 YP_001991176.1 CDS Rpal_2180 NC_011004.1 2363576 2364568 D TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: bra:BRADO4745 tRNA-dihydrouridine synthase A; tRNA-dihydrouridine synthase A 2363576..2364568 Rhodopseudomonas palustris TIE-1 6409840 YP_001991177.1 CDS Rpal_2181 NC_011004.1 2364598 2364921 R KEGG: swi:Swit_0156 transcriptional regulator-like protein; XRE family transcriptional regulator complement(2364598..2364921) Rhodopseudomonas palustris TIE-1 6409841 YP_001991178.1 CDS Rpal_2182 NC_011004.1 2364918 2365292 R PFAM: protein of unknown function DUF1044; KEGG: swi:Swit_0155 protein of unknown function DUF1044; hypothetical protein complement(2364918..2365292) Rhodopseudomonas palustris TIE-1 6409842 YP_001991179.1 CDS Rpal_2183 NC_011004.1 2365480 2366016 R KEGG: bbt:BBta_3458 exported protein of unknown function; hypothetical protein complement(2365480..2366016) Rhodopseudomonas palustris TIE-1 6409843 YP_001991180.1 CDS Rpal_2184 NC_011004.1 2366039 2366263 R PFAM: protein of unknown function DUF1289; KEGG: bja:bsl3737 hypothetical protein; hypothetical protein complement(2366039..2366263) Rhodopseudomonas palustris TIE-1 6409844 YP_001991181.1 CDS Rpal_2185 NC_011004.1 2366308 2367903 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nha:Nham_1469 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2366308..2367903) Rhodopseudomonas palustris TIE-1 6409845 YP_001991182.1 CDS Rpal_2186 NC_011004.1 2368072 2368941 R PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bra:BRADO4737 oxidoreductase; 3-hydroxyisobutyrate dehydrogenase; 6-phosphogluconate dehydrogenase complement(2368072..2368941) Rhodopseudomonas palustris TIE-1 6409846 YP_001991183.1 CDS Rpal_2187 NC_011004.1 2369250 2370362 D KEGG: bja:blr3742 probable multidrug-resistance related protein; multidrug-resistance-like protein 2369250..2370362 Rhodopseudomonas palustris TIE-1 6409847 YP_001991184.1 CDS Rpal_2188 NC_011004.1 2370613 2371704 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bbt:BBta_3466 periplasmic mannitol-binding protein; TRAP dicarboxylate transporter subunit DctP 2370613..2371704 Rhodopseudomonas palustris TIE-1 6409848 YP_001991185.1 CDS Rpal_2189 NC_011004.1 2371893 2373734 R TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: xau:Xaut_4764 TRAP dicarboxylate transporter DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(2371893..2373734) Rhodopseudomonas palustris TIE-1 6409849 YP_001991186.1 CDS Rpal_2190 NC_011004.1 2373772 2374368 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: azc:AZC_2523 glutamate transport protein; tripartite AtP-independent periplasmic transporter subunit DctQ complement(2373772..2374368) Rhodopseudomonas palustris TIE-1 6409850 YP_001991187.1 CDS moaA NC_011004.1 2374542 2375576 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(2374542..2375576) Rhodopseudomonas palustris TIE-1 6409851 YP_001991188.1 CDS Rpal_2192 NC_011004.1 2375683 2376132 R KEGG: nha:Nham_1478 hypothetical protein; hypothetical protein complement(2375683..2376132) Rhodopseudomonas palustris TIE-1 6409852 YP_001991189.1 CDS Rpal_2193 NC_011004.1 2376296 2376973 R TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bbt:BBta_3482 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(2376296..2376973) Rhodopseudomonas palustris TIE-1 6409853 YP_001991190.1 CDS Rpal_2194 NC_011004.1 2377124 2377822 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 2377124..2377822 Rhodopseudomonas palustris TIE-1 6409854 YP_001991191.1 CDS Rpal_2195 NC_011004.1 2377849 2378358 D KEGG: nwi:Nwi_1222 hypothetical protein; hypothetical protein 2377849..2378358 Rhodopseudomonas palustris TIE-1 6409855 YP_001991192.1 CDS Rpal_2196 NC_011004.1 2378376 2379761 D TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: nha:Nham_1482 glutathione reductase; glutathione-disulfide reductase 2378376..2379761 Rhodopseudomonas palustris TIE-1 6409856 YP_001991193.1 CDS Rpal_2197 NC_011004.1 2379950 2381338 D KEGG: bja:blr3778 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; phospho-2-dehydro-3-deoxyheptonate aldolase 2379950..2381338 Rhodopseudomonas palustris TIE-1 6409857 YP_001991194.1 CDS Rpal_2198 NC_011004.1 2381469 2381822 D PFAM: diacylglycerol kinase; KEGG: nha:Nham_1484 diacylglycerol kinase; diacylglycerol kinase 2381469..2381822 Rhodopseudomonas palustris TIE-1 6409858 YP_001991195.1 CDS Rpal_2199 NC_011004.1 2381869 2383632 D NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2381869..2383632 Rhodopseudomonas palustris TIE-1 6409859 YP_001991196.1 CDS Rpal_2200 NC_011004.1 2383880 2384209 R hypothetical protein complement(2383880..2384209) Rhodopseudomonas palustris TIE-1 6409860 YP_001991197.1 CDS Rpal_2201 NC_011004.1 2384437 2385444 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bja:blr7666 transcriptional regulatory protein; AraC family transcriptional regulator complement(2384437..2385444) Rhodopseudomonas palustris TIE-1 6409861 YP_001991198.1 CDS Rpal_2202 NC_011004.1 2386502 2388292 D PFAM: sulfatase; KEGG: reh:H16_B0315 arylsulfatase; sulfatase 2386502..2388292 Rhodopseudomonas palustris TIE-1 6409862 YP_001991199.1 CDS Rpal_2203 NC_011004.1 2388328 2389377 D KEGG: bja:blr2668 hypothetical protein; hypothetical protein 2388328..2389377 Rhodopseudomonas palustris TIE-1 6409863 YP_001991200.1 CDS Rpal_2204 NC_011004.1 2389632 2390042 R PFAM: PilT protein domain protein; KEGG: cch:Cag_1433 possible NtrR protein; PilT protein domain-containing protein complement(2389632..2390042) Rhodopseudomonas palustris TIE-1 6409864 YP_001991201.1 CDS Rpal_2205 NC_011004.1 2390483 2390908 D PFAM: cupin; KEGG: azc:AZC_1498 hypothetical protein; cupin 2390483..2390908 Rhodopseudomonas palustris TIE-1 6409865 YP_001991202.1 CDS Rpal_2206 NC_011004.1 2391005 2392174 R KEGG: bja:bll3788 hypothetical protein; hypothetical protein complement(2391005..2392174) Rhodopseudomonas palustris TIE-1 6409866 YP_001991203.1 CDS Rpal_2207 NC_011004.1 2392360 2392668 R KEGG: bja:bll3789 hypothetical protein; hypothetical protein complement(2392360..2392668) Rhodopseudomonas palustris TIE-1 6409867 YP_001991204.1 CDS cysS NC_011004.1 2393070 2394545 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2393070..2394545 Rhodopseudomonas palustris TIE-1 6409868 YP_001991205.1 CDS Rpal_2209 NC_011004.1 2394829 2394960 D KEGG: bbt:BBta_3499 hypothetical protein; hypothetical protein 2394829..2394960 Rhodopseudomonas palustris TIE-1 6409869 YP_001991206.1 CDS Rpal_2210 NC_011004.1 2394960 2395460 D PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_3500 acetyltransferase; N-acetyltransferase GCN5 2394960..2395460 Rhodopseudomonas palustris TIE-1 6409870 YP_001991207.1 CDS Rpal_2211 NC_011004.1 2395457 2397055 D KEGG: nwi:Nwi_1231 alpha-isopropylmalate/homocitrate synthase family transferase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; alpha-isopropylmalate/homocitrate synthase family transferase 2395457..2397055 Rhodopseudomonas palustris TIE-1 6409871 YP_001991208.1 CDS Rpal_2212 NC_011004.1 2397237 2398793 D thiamine-pyrophosphate requiring enzyme; hypothetical protein 2397237..2398793 Rhodopseudomonas palustris TIE-1 6409872 YP_001991209.1 CDS Rpal_2213 NC_011004.1 2398805 2400214 D PFAM: FAD linked oxidase domain protein; KEGG: pla:Plav_2705 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 2398805..2400214 Rhodopseudomonas palustris TIE-1 6409873 YP_001991210.1 CDS Rpal_2214 NC_011004.1 2400239 2402308 R PFAM: cytochrome C class I; KEGG: xau:Xaut_1071 gluconate 2-dehydrogenase (acceptor); gluconate 2-dehydrogenase (acceptor) complement(2400239..2402308) Rhodopseudomonas palustris TIE-1 6409874 YP_001991211.1 CDS Rpal_2215 NC_011004.1 2402491 2403126 R PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1232 conserved hypothetical protein 730; hypothetical protein complement(2402491..2403126) Rhodopseudomonas palustris TIE-1 6409875 YP_001991212.1 CDS Rpal_2216 NC_011004.1 2403285 2405240 D PFAM: ABC transporter transmembrane region; ABC transporter; SMART: ATPase AAA; KEGG: bja:blr3795 ABC transporter HlyB/MsbA family; ABC transporter 2403285..2405240 Rhodopseudomonas palustris TIE-1 6409876 YP_001991213.1 CDS Rpal_2217 NC_011004.1 2405289 2405987 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 2405289..2405987 Rhodopseudomonas palustris TIE-1 6409877 YP_001991214.1 CDS Rpal_2218 NC_011004.1 2406062 2406934 D KEGG: bja:blr3797 phosphatidylserine synthase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; outer membrane TOM13 domain protein; CDP-diacylglycerol/serine O-phosphatidyltransferase 2406062..2406934 Rhodopseudomonas palustris TIE-1 6409878 YP_001991215.1 CDS Rpal_2219 NC_011004.1 2407085 2407804 D KEGG: bbt:BBta_3507 hypothetical protein; hypothetical protein 2407085..2407804 Rhodopseudomonas palustris TIE-1 6409879 YP_001991216.1 CDS Rpal_2220 NC_011004.1 2408036 2408809 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: bra:BRADO4687 chemotaxis protein MotA (flagellar motor component); MotA/TolQ/ExbB proton channel 2408036..2408809 Rhodopseudomonas palustris TIE-1 6409880 YP_001991217.1 CDS Rpal_2221 NC_011004.1 2408840 2409664 D PFAM: OmpA/MotB domain protein; KEGG: bja:blr3801 probable chemotaxis protein; OmpA/MotB domain-containing protein 2408840..2409664 Rhodopseudomonas palustris TIE-1 6409881 YP_001991218.1 CDS Rpal_2222 NC_011004.1 2409898 2411787 D PFAM: K potassium transporter; KEGG: bbt:BBta_3512 low affinity potassium transporter (Kup family); K potassium transporter 2409898..2411787 Rhodopseudomonas palustris TIE-1 6409882 YP_001991219.1 CDS Rpal_2223 NC_011004.1 2411997 2412323 D SMART: rhodanese domain protein; KEGG: bja:blr3804 hypothetical protein; rhodanese domain-containing protein 2411997..2412323 Rhodopseudomonas palustris TIE-1 6409883 YP_001991220.1 CDS Rpal_2224 NC_011004.1 2412346 2413503 D PFAM: aminotransferase class I and II; KEGG: bbt:BBta_3515 hypothetical protein; hypothetical protein 2412346..2413503 Rhodopseudomonas palustris TIE-1 6409884 YP_001991221.1 CDS Rpal_2225 NC_011004.1 2413511 2414626 D PFAM: extracellular solute-binding protein family 1; KEGG: nha:Nham_1501 extracellular solute-binding protein, family 1; family 1 extracellular solute-binding protein 2413511..2414626 Rhodopseudomonas palustris TIE-1 6409885 YP_001991222.1 CDS Rpal_2226 NC_011004.1 2414739 2415878 D PFAM: protein of unknown function DUF1551; hypothetical protein 2414739..2415878 Rhodopseudomonas palustris TIE-1 6409886 YP_001991223.1 CDS Rpal_2227 NC_011004.1 2415894 2417852 R PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tac:Ta0491 P-methyltransferase related protein; radical SAM domain-containing protein complement(2415894..2417852) Rhodopseudomonas palustris TIE-1 6409887 YP_001991224.1 CDS Rpal_2228 NC_011004.1 2418138 2419070 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(2418138..2419070) Rhodopseudomonas palustris TIE-1 6409888 YP_001991225.1 CDS Rpal_2229 NC_011004.1 2419070 2420092 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xau:Xaut_1258 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase zinc-binding domain-containing protein complement(2419070..2420092) Rhodopseudomonas palustris TIE-1 6409889 YP_001991226.1 CDS Rpal_2230 NC_011004.1 2420189 2421469 R FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-(acyl carrier protein) synthase II complement(2420189..2421469) Rhodopseudomonas palustris TIE-1 6409890 YP_001991227.1 CDS Rpal_2231 NC_011004.1 2421480 2422688 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II complement(2421480..2422688) Rhodopseudomonas palustris TIE-1 6409891 YP_001991228.1 CDS Rpal_2232 NC_011004.1 2422681 2423151 R PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: nwi:Nwi_1245 3-hydroxymyristoyl-acyl carrier protein dehydratase; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ complement(2422681..2423151) Rhodopseudomonas palustris TIE-1 6409892 YP_001991229.1 CDS Rpal_2233 NC_011004.1 2423177 2423458 R Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; acyl carrier protein complement(2423177..2423458) Rhodopseudomonas palustris TIE-1 6409893 YP_001991230.1 CDS Rpal_2234 NC_011004.1 2423625 2423978 R KEGG: bbt:BBta_3523 hypothetical protein; hypothetical protein complement(2423625..2423978) Rhodopseudomonas palustris TIE-1 6409894 YP_001991231.1 CDS Rpal_2235 NC_011004.1 2424175 2424798 D PFAM: ParB-like nuclease; KEGG: bbt:BBta_3524 hypothetical protein; ParB-like nuclease 2424175..2424798 Rhodopseudomonas palustris TIE-1 6409895 YP_001991232.1 CDS Rpal_2236 NC_011004.1 2424807 2425286 R PFAM: MgtC/SapB transporter; KEGG: bja:bll3816 sulfur-regulated protein; MgtC/SapB transporter complement(2424807..2425286) Rhodopseudomonas palustris TIE-1 6409896 YP_001991233.1 CDS Rpal_2237 NC_011004.1 2425702 2428035 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_0972 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2425702..2428035 Rhodopseudomonas palustris TIE-1 6409897 YP_001991234.1 CDS Rpal_2238 NC_011004.1 2428040 2429791 R PFAM: protein of unknown function DUF87; KEGG: nha:Nham_1508 protein of unknown function DUF87; hypothetical protein complement(2428040..2429791) Rhodopseudomonas palustris TIE-1 6409898 YP_001991235.1 CDS Rpal_2239 NC_011004.1 2430124 2430705 D KEGG: swi:Swit_2155 hypothetical protein; hypothetical protein 2430124..2430705 Rhodopseudomonas palustris TIE-1 6409899 YP_001991236.1 CDS Rpal_2240 NC_011004.1 2430730 2431623 R KEGG: nwi:Nwi_2345 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB complement(2430730..2431623) Rhodopseudomonas palustris TIE-1 6409900 YP_001991237.1 CDS miaA NC_011004.1 2431667 2432572 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 2431667..2432572 Rhodopseudomonas palustris TIE-1 6409901 YP_001991238.1 CDS Rpal_2242 NC_011004.1 2432938 2434716 D TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bra:BRADO5564 acetolactate synthase 3 catalytic subunit; acetolactate synthase 3 catalytic subunit 2432938..2434716 Rhodopseudomonas palustris TIE-1 6409902 YP_001991239.1 CDS ilvH NC_011004.1 2434848 2435390 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2434848..2435390 Rhodopseudomonas palustris TIE-1 6409903 YP_001991240.1 CDS Rpal_2244 NC_011004.1 2435394 2435792 R KEGG: xcv:XCV0079 hypothetical protein; hypothetical protein complement(2435394..2435792) Rhodopseudomonas palustris TIE-1 6409904 YP_001991241.1 CDS Rpal_2245 NC_011004.1 2435977 2436879 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:bll6499 amino acid metabolite efflux pump; hypothetical protein 2435977..2436879 Rhodopseudomonas palustris TIE-1 6409905 YP_001991242.1 CDS Rpal_2246 NC_011004.1 2437074 2438093 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2437074..2438093 Rhodopseudomonas palustris TIE-1 6409906 YP_001991243.1 CDS Rpal_2247 NC_011004.1 2438382 2439110 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_5550 GntR-like protein; GntR family transcriptional regulator 2438382..2439110 Rhodopseudomonas palustris TIE-1 6409907 YP_001991244.1 CDS Rpal_2248 NC_011004.1 2439209 2440441 D PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO0975 ABC-type branched-chain amino acid transporter periplasmic binding protein; branched-chain amino acid ABC transporter periplasmic protein 2439209..2440441 Rhodopseudomonas palustris TIE-1 6409908 YP_001991245.1 CDS Rpal_2249 NC_011004.1 2440568 2441422 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO5556 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2440568..2441422 Rhodopseudomonas palustris TIE-1 6409909 YP_001991246.1 CDS Rpal_2250 NC_011004.1 2442009 2443073 D hypothetical protein 2442009..2443073 Rhodopseudomonas palustris TIE-1 6409910 YP_001991247.1 CDS Rpal_2251 NC_011004.1 2443225 2444772 R PFAM: ABC transporter inner membrane protein; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bra:BRADO5551 glycine betaine/carnitine/choline ABC transporter (permease and substrate binding protein); glycine/betaine ABC transporter substrate-binding protein complement(2443225..2444772) Rhodopseudomonas palustris TIE-1 6409911 YP_001991248.1 CDS Rpal_2252 NC_011004.1 2444769 2445542 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2718 ABC transporter; ABC transporter complement(2444769..2445542) Rhodopseudomonas palustris TIE-1 6409912 YP_001991249.1 CDS Rpal_2253 NC_011004.1 2445611 2446471 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll6488 ABC transporter ATP-binding protein; ABC transporter 2445611..2446471 Rhodopseudomonas palustris TIE-1 6409913 YP_001991250.1 CDS Rpal_2254 NC_011004.1 2446701 2447495 D PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_6067 ABC transporter (permease protein); ABC transporter inner membrane protein 2446701..2447495 Rhodopseudomonas palustris TIE-1 6409914 YP_001991251.1 CDS Rpal_2255 NC_011004.1 2447554 2448576 D PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; KEGG: bbt:BBta_6066 ABC transporter (substrate-binding protein); ABC transporter substrate-binding protein 2447554..2448576 Rhodopseudomonas palustris TIE-1 6409915 YP_001991252.1 CDS Rpal_2256 NC_011004.1 2448584 2449300 D KEGG: bbt:BBta_6065 hypothetical protein; hypothetical protein 2448584..2449300 Rhodopseudomonas palustris TIE-1 6409916 YP_001991253.1 CDS Rpal_2257 NC_011004.1 2449362 2450372 R KEGG: mlo:mll5831 biotin synthetase; TIGRFAM: biotin synthase; PFAM: radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(2449362..2450372) Rhodopseudomonas palustris TIE-1 6409917 YP_001991254.1 CDS Rpal_2258 NC_011004.1 2450642 2450791 D hypothetical protein 2450642..2450791 Rhodopseudomonas palustris TIE-1 6409918 YP_001991255.1 CDS Rpal_2259 NC_011004.1 2450888 2452462 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2450888..2452462 Rhodopseudomonas palustris TIE-1 6409919 YP_001991256.1 CDS Rpal_2260 NC_011004.1 2452686 2453690 D TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bra:BRADO5527 TRAP-type C4-dicarboxylate transport system, binding periplasmic protein (DctP subunit); TRAP dicarboxylate transporter subunit DctP 2452686..2453690 Rhodopseudomonas palustris TIE-1 6409920 YP_001991257.1 CDS Rpal_2261 NC_011004.1 2453829 2454413 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bra:BRADO5526 TRAP-type C4-dicarboxylate transport system, small permease component (DctQ subunit); tripartite AtP-independent periplasmic transporter subunit DctQ 2453829..2454413 Rhodopseudomonas palustris TIE-1 6409921 YP_001991258.1 CDS Rpal_2262 NC_011004.1 2454410 2455735 D TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bra:BRADO5525 TRAP-type C4-dicarboxylate transport system, large permease component (DctM subunit); TRAP dicarboxylate transporter subunit DctM 2454410..2455735 Rhodopseudomonas palustris TIE-1 6409922 YP_001991259.1 CDS Rpal_2263 NC_011004.1 2455868 2456467 D KEGG: bbt:BBta_6040 exported protein of unknown function; hypothetical protein 2455868..2456467 Rhodopseudomonas palustris TIE-1 6409923 YP_001991260.1 CDS Rpal_2264 NC_011004.1 2456985 2457260 R KEGG: bra:BRADO3248 hypothetical protein; hypothetical protein complement(2456985..2457260) Rhodopseudomonas palustris TIE-1 6409925 YP_001991261.1 CDS Rpal_2265 NC_011004.1 2457307 2457483 D hypothetical protein 2457307..2457483 Rhodopseudomonas palustris TIE-1 6409926 YP_001991262.1 CDS Rpal_2266 NC_011004.1 2457504 2457635 R hypothetical protein complement(2457504..2457635) Rhodopseudomonas palustris TIE-1 6409927 YP_001991263.1 CDS Rpal_2267 NC_011004.1 2457778 2458128 R hypothetical protein complement(2457778..2458128) Rhodopseudomonas palustris TIE-1 6409928 YP_001991264.1 CDS Rpal_2268 NC_011004.1 2458128 2458355 R hypothetical protein complement(2458128..2458355) Rhodopseudomonas palustris TIE-1 6409929 YP_001991265.1 CDS Rpal_2269 NC_011004.1 2458366 2458677 R hypothetical protein complement(2458366..2458677) Rhodopseudomonas palustris TIE-1 6409930 YP_001991266.1 CDS Rpal_2270 NC_011004.1 2458668 2459120 R hypothetical protein complement(2458668..2459120) Rhodopseudomonas palustris TIE-1 6409931 YP_001991267.1 CDS Rpal_2271 NC_011004.1 2459253 2459561 R KEGG: nha:Nham_1977 hypothetical protein; hypothetical protein complement(2459253..2459561) Rhodopseudomonas palustris TIE-1 6409932 YP_001991268.1 CDS Rpal_2272 NC_011004.1 2459573 2461594 R PFAM: ATPase AAA; SMART: ATPase AAA; KEGG: nha:Nham_1979 ATPase AAA, central region; ATPase AAA complement(2459573..2461594) Rhodopseudomonas palustris TIE-1 6409933 YP_001991269.1 CDS Rpal_2273 NC_011004.1 2461677 2462114 D hypothetical protein 2461677..2462114 Rhodopseudomonas palustris TIE-1 6409934 YP_001991270.1 CDS Rpal_2274 NC_011004.1 2462509 2462652 D hypothetical protein 2462509..2462652 Rhodopseudomonas palustris TIE-1 6409935 YP_001991271.1 CDS Rpal_2275 NC_011004.1 2462645 2463049 D hypothetical protein 2462645..2463049 Rhodopseudomonas palustris TIE-1 6409936 YP_001991272.1 CDS Rpal_2277 NC_011004.1 2463449 2464042 D KEGG: nha:Nham_2002 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 2463449..2464042 Rhodopseudomonas palustris TIE-1 6409938 YP_001991273.1 CDS Rpal_2278 NC_011004.1 2464559 2469316 D PFAM: NERD domain protein; SMART: ATPase AAA; KEGG: pol:Bpro_5029 superfamily I DNA and RNA helicases and helicase subunits-like; NERD domain-containing protein 2464559..2469316 Rhodopseudomonas palustris TIE-1 6409939 YP_001991274.1 CDS Rpal_2279 NC_011004.1 2469313 2470791 D KEGG: spq:SPAB_03320 hypothetical protein; hypothetical protein 2469313..2470791 Rhodopseudomonas palustris TIE-1 6409940 YP_001991275.1 CDS Rpal_2281 NC_011004.1 2472192 2472608 D PFAM: ATP-binding region ATPase domain protein; KEGG: mrd:Mrad2831_3274 PAS/PAC sensor signal transduction histidine kinase; histidine kinase 2472192..2472608 Rhodopseudomonas palustris TIE-1 6409942 YP_001991276.1 CDS Rpal_2282 NC_011004.1 2472605 2472874 R PFAM: helix-turn-helix domain protein; KEGG: oan:Oant_1301 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(2472605..2472874) Rhodopseudomonas palustris TIE-1 6409943 YP_001991277.1 CDS Rpal_2283 NC_011004.1 2473021 2473557 D hypothetical protein 2473021..2473557 Rhodopseudomonas palustris TIE-1 6409944 YP_001991278.1 CDS Rpal_2285 NC_011004.1 2474118 2474801 R hypothetical protein complement(2474118..2474801) Rhodopseudomonas palustris TIE-1 6409946 YP_001991279.1 CDS Rpal_2286 NC_011004.1 2475251 2476168 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bbt:BBta_7268 cation efflux system protein CzcD; cation diffusion facilitator family transporter 2475251..2476168 Rhodopseudomonas palustris TIE-1 6409947 YP_001991280.1 CDS Rpal_2287 NC_011004.1 2476693 2477169 D PFAM: MgtC/SapB transporter; KEGG: shw:Sputw3181_3581 MgtC/SapB transporter; MgtC/SapB transporter 2476693..2477169 Rhodopseudomonas palustris TIE-1 6409948 YP_001991281.1 CDS Rpal_2288 NC_011004.1 2477558 2479060 D KEGG: sit:TM1040_0424 hypothetical protein; hypothetical protein 2477558..2479060 Rhodopseudomonas palustris TIE-1 6409949 YP_001991282.1 CDS Rpal_2289 NC_011004.1 2479753 2480004 R hypothetical protein complement(2479753..2480004) Rhodopseudomonas palustris TIE-1 6409950 YP_001991283.1 CDS Rpal_2290 NC_011004.1 2480211 2480741 R PFAM: regulatory protein MarR; KEGG: bja:blr4984 transcriptional regulatory protein; MarR family transcriptional regulator complement(2480211..2480741) Rhodopseudomonas palustris TIE-1 6409951 YP_001991284.1 CDS Rpal_2291 NC_011004.1 2480914 2481522 R PFAM: SNARE associated Golgi protein; KEGG: mex:Mext_0105 SNARE associated Golgi protein; hypothetical protein complement(2480914..2481522) Rhodopseudomonas palustris TIE-1 6409952 YP_001991285.1 CDS Rpal_2292 NC_011004.1 2481624 2481923 R KEGG: atc:AGR_pAT_689 hypothetical protein; hypothetical protein complement(2481624..2481923) Rhodopseudomonas palustris TIE-1 6409953 YP_001991286.1 CDS Rpal_2293 NC_011004.1 2482002 2484563 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_7296 cadmium-exporting ATPase; ATPase P complement(2482002..2484563) Rhodopseudomonas palustris TIE-1 6409954 YP_001991287.1 CDS Rpal_2294 NC_011004.1 2484729 2485463 R PFAM: flagellar basal body rod protein; KEGG: bbt:BBta_p0123 flagellar basal-body rod protein FlgF; flagellar basal body rod protein complement(2484729..2485463) Rhodopseudomonas palustris TIE-1 6409955 YP_001991288.1 CDS Rpal_2295 NC_011004.1 2485784 2486365 R hypothetical protein complement(2485784..2486365) Rhodopseudomonas palustris TIE-1 6409956 YP_001991289.1 CDS Rpal_2296 NC_011004.1 2487098 2487619 D PFAM: regulatory protein MarR; KEGG: bja:blr4984 transcriptional regulatory protein; MarR family transcriptional regulator 2487098..2487619 Rhodopseudomonas palustris TIE-1 6409957 YP_001991290.1 CDS Rpal_2297 NC_011004.1 2487759 2488145 D KEGG: nha:Nham_1847 hypothetical protein; hypothetical protein 2487759..2488145 Rhodopseudomonas palustris TIE-1 6409958 YP_001991291.1 CDS Rpal_2298 NC_011004.1 2488205 2489476 D PFAM: outer membrane efflux protein; KEGG: nha:Nham_1848 outer membrane efflux protein; outer membrane efflux protein 2488205..2489476 Rhodopseudomonas palustris TIE-1 6409959 YP_001991292.1 CDS Rpal_2299 NC_011004.1 2489473 2490465 D TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: xau:Xaut_3982 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit 2489473..2490465 Rhodopseudomonas palustris TIE-1 6409960 YP_001991293.1 CDS Rpal_2300 NC_011004.1 2490523 2493735 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: nha:Nham_4533 heavy metal efflux pump CzcA; CzcA family heavy metal efflux pump 2490523..2493735 Rhodopseudomonas palustris TIE-1 6409961 YP_001991294.1 CDS Rpal_2301 NC_011004.1 2493735 2494103 D KEGG: xau:Xaut_3985 hypothetical protein; hypothetical protein 2493735..2494103 Rhodopseudomonas palustris TIE-1 6409962 YP_001991295.1 CDS Rpal_2302 NC_011004.1 2494175 2495341 D KEGG: bbt:BBta_7260 OpgC protein; OpgC protein 2494175..2495341 Rhodopseudomonas palustris TIE-1 6409963 YP_001991296.1 CDS Rpal_2303 NC_011004.1 2497057 2497431 D hypothetical protein 2497057..2497431 Rhodopseudomonas palustris TIE-1 6409964 YP_001991297.1 CDS Rpal_2304 NC_011004.1 2497442 2497792 D hypothetical protein 2497442..2497792 Rhodopseudomonas palustris TIE-1 6409965 YP_001991298.1 CDS Rpal_2305 NC_011004.1 2497792 2498040 D hypothetical protein 2497792..2498040 Rhodopseudomonas palustris TIE-1 6409966 YP_001991299.1 CDS Rpal_2306 NC_011004.1 2498405 2498644 R hypothetical protein complement(2498405..2498644) Rhodopseudomonas palustris TIE-1 6409967 YP_001991300.1 CDS Rpal_2307 NC_011004.1 2498699 2499031 R hypothetical protein complement(2498699..2499031) Rhodopseudomonas palustris TIE-1 6409968 YP_001991301.1 CDS Rpal_2308 NC_011004.1 2499040 2499213 R KEGG: sun:SUN_2228 hypothetical protein; hypothetical protein complement(2499040..2499213) Rhodopseudomonas palustris TIE-1 6409969 YP_001991302.1 CDS Rpal_2309 NC_011004.1 2499654 2499941 R hypothetical protein complement(2499654..2499941) Rhodopseudomonas palustris TIE-1 6409970 YP_001991303.1 CDS Rpal_2310 NC_011004.1 2500353 2500859 D hypothetical protein 2500353..2500859 Rhodopseudomonas palustris TIE-1 6409971 YP_001991304.1 CDS Rpal_2311 NC_011004.1 2500831 2501148 R hypothetical protein complement(2500831..2501148) Rhodopseudomonas palustris TIE-1 6409972 YP_001991305.1 CDS Rpal_2312 NC_011004.1 2501293 2502141 D PFAM: metallophosphoesterase; KEGG: ajs:Ajs_0506 metallophosphoesterase; metallophosphoesterase 2501293..2502141 Rhodopseudomonas palustris TIE-1 6409973 YP_001991306.1 CDS Rpal_2313 NC_011004.1 2502141 2502623 D PFAM: VRR-NUC domain protein; KEGG: ppf:Pput_4127 VRR-NUC domain protein; VRR-NUC domain-containing protein 2502141..2502623 Rhodopseudomonas palustris TIE-1 6409974 YP_001991307.1 CDS Rpal_2314 NC_011004.1 2502620 2503195 D hypothetical protein 2502620..2503195 Rhodopseudomonas palustris TIE-1 6409975 YP_001991308.1 CDS Rpal_2315 NC_011004.1 2503192 2503536 D hypothetical protein 2503192..2503536 Rhodopseudomonas palustris TIE-1 6409976 YP_001991309.1 CDS Rpal_2316 NC_011004.1 2503568 2504509 R TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: nha:Nham_3852 ATP dependent DNA ligase; DNA polymerase LigD, ligase domain-containing protein complement(2503568..2504509) Rhodopseudomonas palustris TIE-1 6409977 YP_001991310.1 CDS Rpal_2317 NC_011004.1 2504647 2504940 D hypothetical protein 2504647..2504940 Rhodopseudomonas palustris TIE-1 6409978 YP_001991311.1 CDS Rpal_2318 NC_011004.1 2504894 2505142 D hypothetical protein 2504894..2505142 Rhodopseudomonas palustris TIE-1 6409979 YP_001991312.1 CDS Rpal_2319 NC_011004.1 2505146 2506021 D KEGG: sco:SCO3290 hypothetical protein; hypothetical protein 2505146..2506021 Rhodopseudomonas palustris TIE-1 6409980 YP_001991313.1 CDS Rpal_2320 NC_011004.1 2506018 2506560 D KEGG: bja:bll7218 hypothetical protein; hypothetical protein 2506018..2506560 Rhodopseudomonas palustris TIE-1 6409981 YP_001991314.1 CDS Rpal_2321 NC_011004.1 2507151 2507495 D hypothetical protein 2507151..2507495 Rhodopseudomonas palustris TIE-1 6409982 YP_001991315.1 CDS Rpal_2322 NC_011004.1 2507566 2508195 D hypothetical protein 2507566..2508195 Rhodopseudomonas palustris TIE-1 6409983 YP_001991316.1 CDS Rpal_2323 NC_011004.1 2508206 2508478 D hypothetical protein 2508206..2508478 Rhodopseudomonas palustris TIE-1 6409984 YP_001991317.1 CDS Rpal_2324 NC_011004.1 2508562 2509047 R KEGG: mrd:Mrad2831_2505 hypothetical protein; hypothetical protein complement(2508562..2509047) Rhodopseudomonas palustris TIE-1 6409985 YP_001991318.1 CDS Rpal_2325 NC_011004.1 2509550 2509855 R hypothetical protein complement(2509550..2509855) Rhodopseudomonas palustris TIE-1 6409986 YP_001991319.1 CDS Rpal_2326 NC_011004.1 2510751 2510909 D hypothetical protein 2510751..2510909 Rhodopseudomonas palustris TIE-1 6409987 YP_001991320.1 CDS Rpal_2327 NC_011004.1 2510995 2511282 D hypothetical protein 2510995..2511282 Rhodopseudomonas palustris TIE-1 6409988 YP_001991321.1 CDS Rpal_2328 NC_011004.1 2511745 2512023 D hypothetical protein 2511745..2512023 Rhodopseudomonas palustris TIE-1 6409989 YP_001991322.1 CDS Rpal_2329 NC_011004.1 2512768 2513784 R KEGG: ade:Adeh_1681 PE-PGRS family protein; hypothetical protein complement(2512768..2513784) Rhodopseudomonas palustris TIE-1 6409990 YP_001991323.1 CDS Rpal_2330 NC_011004.1 2514112 2514834 D PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: nwi:Nwi_0627 transcriptional regulatory protein, LuxR family; LuxR family transcriptional regulator 2514112..2514834 Rhodopseudomonas palustris TIE-1 6409991 YP_001991324.1 CDS Rpal_2331 NC_011004.1 2514924 2515562 D PFAM: autoinducer synthesis protein; KEGG: nwi:Nwi_0626 autoinducer synthesis protein; autoinducer synthesis protein 2514924..2515562 Rhodopseudomonas palustris TIE-1 6409992 YP_001991325.1 CDS Rpal_2334 NC_011004.1 2518491 2518646 D hypothetical protein 2518491..2518646 Rhodopseudomonas palustris TIE-1 6409995 YP_001991326.1 CDS Rpal_2335 NC_011004.1 2518798 2520261 R KEGG: cvi:CV_2405 hypothetical protein; hypothetical protein complement(2518798..2520261) Rhodopseudomonas palustris TIE-1 6409996 YP_001991327.1 CDS Rpal_2336 NC_011004.1 2520410 2522182 D KEGG: bra:BRADO4720 hypothetical protein; hypothetical protein 2520410..2522182 Rhodopseudomonas palustris TIE-1 6409997 YP_001991328.1 CDS Rpal_2338 NC_011004.1 2522689 2522961 D hypothetical protein 2522689..2522961 Rhodopseudomonas palustris TIE-1 6409999 YP_001991329.1 CDS Rpal_2339 NC_011004.1 2522993 2524444 R KEGG: mrd:Mrad2831_2505 hypothetical protein; hypothetical protein complement(2522993..2524444) Rhodopseudomonas palustris TIE-1 6410000 YP_001991330.1 CDS Rpal_2340 NC_011004.1 2524882 2525508 D hypothetical protein 2524882..2525508 Rhodopseudomonas palustris TIE-1 6410002 YP_001991331.1 CDS Rpal_2341 NC_011004.1 2525654 2528011 D PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: azc:AZC_3019 arginine/lysine/ornithine decarboxylases; ornithine decarboxylase 2525654..2528011 Rhodopseudomonas palustris TIE-1 6410003 YP_001991332.1 CDS Rpal_2342 NC_011004.1 2528034 2528576 D PFAM: GCN5-related N-acetyltransferase; KEGG: xau:Xaut_0639 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2528034..2528576 Rhodopseudomonas palustris TIE-1 6410004 YP_001991333.1 CDS Rpal_2343 NC_011004.1 2528698 2529057 D KEGG: bja:blr4934 hypothetical protein; hypothetical protein 2528698..2529057 Rhodopseudomonas palustris TIE-1 6410005 YP_001991334.1 CDS Rpal_2344 NC_011004.1 2529112 2530383 D PFAM: outer membrane efflux protein; KEGG: bja:blr4935 divalent cation resistant determinant protein C; outer membrane efflux protein 2529112..2530383 Rhodopseudomonas palustris TIE-1 6410006 YP_001991335.1 CDS Rpal_2345 NC_011004.1 2530380 2531375 D TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: xau:Xaut_3982 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit 2530380..2531375 Rhodopseudomonas palustris TIE-1 6410007 YP_001991336.1 CDS Rpal_2346 NC_011004.1 2531405 2534620 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: nha:Nham_4533 heavy metal efflux pump CzcA; CzcA family heavy metal efflux pump 2531405..2534620 Rhodopseudomonas palustris TIE-1 6410008 YP_001991337.1 CDS Rpal_2347 NC_011004.1 2534617 2534985 D KEGG: xau:Xaut_3985 hypothetical protein; hypothetical protein 2534617..2534985 Rhodopseudomonas palustris TIE-1 6410009 YP_001991338.1 CDS Rpal_2348 NC_011004.1 2535046 2535315 R KEGG: rme:Rmet_4922 hypothetical protein; hypothetical protein complement(2535046..2535315) Rhodopseudomonas palustris TIE-1 6410010 YP_001991339.1 CDS Rpal_2349 NC_011004.1 2535389 2536288 R KEGG: bbt:BBta_6006 hypothetical protein; hypothetical protein complement(2535389..2536288) Rhodopseudomonas palustris TIE-1 6410011 YP_001991340.1 CDS Rpal_2350 NC_011004.1 2536429 2538723 D PFAM: FMN-binding domain protein; KEGG: bja:blr0314 nitrous oxide reductase expression regulator; FMN-binding domain-containing protein 2536429..2538723 Rhodopseudomonas palustris TIE-1 6410012 YP_001991341.1 CDS Rpal_2351 NC_011004.1 2538742 2540679 D reduces nitrous oxide to nitrogen; nitrous-oxide reductase 2538742..2540679 Rhodopseudomonas palustris TIE-1 6410013 YP_001991342.1 CDS Rpal_2352 NC_011004.1 2540682 2542046 D PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; carbohydrate-binding and sugar hydrolysis; KEGG: bja:blr0316 periplasmic copper-binding precursor; periplasmic copper-binding protein 2540682..2542046 Rhodopseudomonas palustris TIE-1 6410014 YP_001991343.1 CDS Rpal_2353 NC_011004.1 2542043 2542948 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr0317 copper ABC transporter; ABC transporter 2542043..2542948 Rhodopseudomonas palustris TIE-1 6410015 YP_001991344.1 CDS Rpal_2354 NC_011004.1 2542945 2543772 D KEGG: bja:blr0318 nitrous oxide metabolic protein; nitrous oxide metabolic protein 2542945..2543772 Rhodopseudomonas palustris TIE-1 6410016 YP_001991345.1 CDS Rpal_2355 NC_011004.1 2543769 2544320 D PFAM: NosL family protein; KEGG: bja:blr0319 NosL protein; NosL family protein 2543769..2544320 Rhodopseudomonas palustris TIE-1 6410017 YP_001991346.1 CDS Rpal_2356 NC_011004.1 2544333 2545331 D PFAM: ApbE family lipoprotein; KEGG: bja:blr0320 NosX protein; ApbE family lipoprotein 2544333..2545331 Rhodopseudomonas palustris TIE-1 6410018 YP_001991347.1 CDS Rpal_2357 NC_011004.1 2545367 2545837 D KEGG: pla:Plav_1007 hypothetical protein; hypothetical protein 2545367..2545837 Rhodopseudomonas palustris TIE-1 6410019 YP_001991348.1 CDS Rpal_2358 NC_011004.1 2545924 2546214 D KEGG: mag:amb3576 hypothetical protein; hypothetical protein 2545924..2546214 Rhodopseudomonas palustris TIE-1 6410020 YP_001991349.1 CDS Rpal_2359 NC_011004.1 2546211 2547488 D KEGG: mag:amb3575 hypothetical protein; hypothetical protein 2546211..2547488 Rhodopseudomonas palustris TIE-1 6410021 YP_001991350.1 CDS Rpal_2360 NC_011004.1 2547508 2548017 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: mag:amb3574 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 2547508..2548017 Rhodopseudomonas palustris TIE-1 6410022 YP_001991351.1 CDS Rpal_2361 NC_011004.1 2548169 2548420 R PFAM: protein of unknown function DUF378; KEGG: bra:BRADO1751 hypothetical protein; hypothetical protein complement(2548169..2548420) Rhodopseudomonas palustris TIE-1 6410023 YP_001991352.1 CDS Rpal_2362 NC_011004.1 2548525 2549385 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO5453 oxidoreductase, NAD(P)-binding domain; short-chain dehydrogenase/reductase SDR complement(2548525..2549385) Rhodopseudomonas palustris TIE-1 6410024 YP_001991353.1 CDS Rpal_2363 NC_011004.1 2549453 2549821 R SMART: response regulator receiver; KEGG: mrd:Mrad2831_4234 response regulator receiver protein; response regulator receiver protein complement(2549453..2549821) Rhodopseudomonas palustris TIE-1 6410025 YP_001991354.1 CDS Rpal_2364 NC_011004.1 2549818 2551719 R KEGG: mrd:Mrad2831_6264 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; signal transduction histidine kinase complement(2549818..2551719) Rhodopseudomonas palustris TIE-1 6410026 YP_001991355.1 CDS Rpal_2365 NC_011004.1 2551807 2552004 R hypothetical protein complement(2551807..2552004) Rhodopseudomonas palustris TIE-1 6410027 YP_001991356.1 CDS Rpal_2366 NC_011004.1 2552147 2552824 R PFAM: HWE histidine kinase; KEGG: mex:Mext_2764 HWE histidine kinase; signal transduction histidine kinase complement(2552147..2552824) Rhodopseudomonas palustris TIE-1 6410028 YP_001991357.1 CDS Rpal_2367 NC_011004.1 2552828 2553595 R PFAM: regulatory protein Crp; KEGG: mex:Mext_2763 cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator complement(2552828..2553595) Rhodopseudomonas palustris TIE-1 6410029 YP_001991358.1 CDS Rpal_2368 NC_011004.1 2553883 2554005 D hypothetical protein 2553883..2554005 Rhodopseudomonas palustris TIE-1 6410030 YP_001991359.1 CDS Rpal_2370 NC_011004.1 2554537 2555706 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ret:RHE_PB00045 alcohol dehydrogenase protein; alcohol dehydrogenase GroES domain-containing protein complement(2554537..2555706) Rhodopseudomonas palustris TIE-1 6410032 YP_001991360.1 CDS Rpal_2371 NC_011004.1 2556153 2557085 D PFAM: periplasmic binding protein; KEGG: nha:Nham_3728 periplasmic binding protein; periplasmic binding protein 2556153..2557085 Rhodopseudomonas palustris TIE-1 6410033 YP_001991361.1 CDS Rpal_2372 NC_011004.1 2557122 2557871 R catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase complement(2557122..2557871) Rhodopseudomonas palustris TIE-1 6410034 YP_001991362.1 CDS Rpal_2373 NC_011004.1 2557871 2559232 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(2557871..2559232) Rhodopseudomonas palustris TIE-1 6410035 YP_001991363.1 CDS Rpal_2374 NC_011004.1 2559219 2559998 R KEGG: atc:AGR_C_5074 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase complement(2559219..2559998) Rhodopseudomonas palustris TIE-1 6410036 YP_001991364.1 CDS Rpal_2375 NC_011004.1 2559995 2560387 R KEGG: mex:Mext_1035 CobE protein; CobE protein complement(2559995..2560387) Rhodopseudomonas palustris TIE-1 6410037 YP_001991365.1 CDS Rpal_2376 NC_011004.1 2560384 2561607 R KEGG: azc:AZC_3942 precorrin-6Y C5,15-methyltransferase; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE complement(2560384..2561607) Rhodopseudomonas palustris TIE-1 6410038 YP_001991366.1 CDS Rpal_2377 NC_011004.1 2561639 2562388 D CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 2561639..2562388 Rhodopseudomonas palustris TIE-1 6410039 YP_001991367.1 CDS Rpal_2378 NC_011004.1 2562355 2563116 R TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nar:Saro_0338 precorrin-3B C17-methyltransferase; precorrin-3B C(17)-methyltransferase complement(2562355..2563116) Rhodopseudomonas palustris TIE-1 6410040 YP_001991368.1 CDS Rpal_2379 NC_011004.1 2563113 2563841 R TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sil:SPO2866 precorrin-2 C20-methyltransferase; precorrin-2 C(20)-methyltransferase complement(2563113..2563841) Rhodopseudomonas palustris TIE-1 6410041 YP_001991369.1 CDS cobH NC_011004.1 2563838 2564467 R catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase complement(2563838..2564467) Rhodopseudomonas palustris TIE-1 6410042 YP_001991370.1 CDS Rpal_2381 NC_011004.1 2564464 2565027 R KEGG: jan:Jann_2931 cobaltochelatase; hypothetical protein complement(2564464..2565027) Rhodopseudomonas palustris TIE-1 6410043 YP_001991371.1 CDS Rpal_2382 NC_011004.1 2565428 2566564 R TIGRFAM: CitB domain protein; KEGG: rru:Rru_A2987 hypothetical protein; CitB domain-containing protein complement(2565428..2566564) Rhodopseudomonas palustris TIE-1 6410044 YP_001991372.1 CDS Rpal_2383 NC_011004.1 2566551 2567855 R catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase complement(2566551..2567855) Rhodopseudomonas palustris TIE-1 6410045 YP_001991373.1 CDS Rpal_2384 NC_011004.1 2568419 2569483 D KEGG: cak:Caul_2742 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2568419..2569483 Rhodopseudomonas palustris TIE-1 6410046 YP_001991374.1 CDS Rpal_2385 NC_011004.1 2569480 2570250 D PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cak:Caul_2743 cobalamin 5'-phosphate synthase; cobalamin-5-phosphate synthase CobS 2569480..2570250 Rhodopseudomonas palustris TIE-1 6410047 YP_001991375.1 CDS Rpal_2386 NC_011004.1 2570334 2571908 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2570334..2571908 Rhodopseudomonas palustris TIE-1 6410048 YP_001991376.1 CDS Rpal_2387 NC_011004.1 2571940 2572704 D catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase 2571940..2572704 Rhodopseudomonas palustris TIE-1 6410049 YP_001991377.1 CDS Rpal_2388 NC_011004.1 2572824 2573588 D PFAM: glutamine amidotransferase class-I; KEGG: xau:Xaut_4097 glutamine amidotransferase class-I; glutamine amidotransferase 2572824..2573588 Rhodopseudomonas palustris TIE-1 6410050 YP_001991378.1 CDS Rpal_2389 NC_011004.1 2573593 2575242 R PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: bja:bll4251 MFS permease; hypothetical protein complement(2573593..2575242) Rhodopseudomonas palustris TIE-1 6410051 YP_001991379.1 CDS Rpal_2390 NC_011004.1 2575569 2576219 D PFAM: isochorismatase hydrolase; KEGG: bra:BRADO5128 isochorismatase family protein; isochorismatase hydrolase 2575569..2576219 Rhodopseudomonas palustris TIE-1 6410052 YP_001991380.1 CDS Rpal_2391 NC_011004.1 2576244 2576534 D PFAM: protein of unknown function DUF1427; KEGG: bja:bsl6958 hypothetical protein; hypothetical protein 2576244..2576534 Rhodopseudomonas palustris TIE-1 6410053 YP_001991381.1 CDS Rpal_2392 NC_011004.1 2576531 2578411 D PFAM: Amidohydrolase 3; KEGG: bja:blr4259 hypothetical protein; amidohydrolase 2576531..2578411 Rhodopseudomonas palustris TIE-1 6410054 YP_001991382.1 CDS Rpal_2393 NC_011004.1 2578413 2578838 D PFAM: DoxX family protein; KEGG: bja:bll6956 hypothetical protein; DoxX family protein 2578413..2578838 Rhodopseudomonas palustris TIE-1 6410055 YP_001991383.1 CDS Rpal_2394 NC_011004.1 2578858 2579778 D KEGG: bja:blr4261 hypothetical protein; hypothetical protein 2578858..2579778 Rhodopseudomonas palustris TIE-1 6410056 YP_001991384.1 CDS Rpal_2395 NC_011004.1 2579775 2581208 D KEGG: bja:blr4262 hypothetical protein; hypothetical protein 2579775..2581208 Rhodopseudomonas palustris TIE-1 6410057 YP_001991385.1 CDS Rpal_2396 NC_011004.1 2581281 2582297 R PFAM: alpha/beta hydrolase fold; KEGG: atc:AGR_L_210 non-heme chloroperoxidase (chloride peroxidase) (CPO-P) (chloroperoxidase P); alpha/beta hydrolase fold protein complement(2581281..2582297) Rhodopseudomonas palustris TIE-1 6410058 YP_001991386.1 CDS Rpal_2397 NC_011004.1 2582338 2583054 R KEGG: azc:AZC_2121 hypothetical protein; hypothetical protein complement(2582338..2583054) Rhodopseudomonas palustris TIE-1 6410059 YP_001991387.1 CDS Rpal_2398 NC_011004.1 2583206 2588344 R PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: serine/threonine protein kinase; KEGG: bvi:Bcep1808_5666 histidine kinase, dimerisation/phosphoacceptor; ATP-binding protein complement(2583206..2588344) Rhodopseudomonas palustris TIE-1 6410060 YP_001991388.1 CDS Rpal_2399 NC_011004.1 2588331 2588717 R PFAM: response regulator receiver; KEGG: azc:AZC_1362 two-component response regulator; response regulator receiver protein complement(2588331..2588717) Rhodopseudomonas palustris TIE-1 6410061 YP_001991389.1 CDS Rpal_2400 NC_011004.1 2588806 2589438 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: azc:AZC_1361 high similarity to two-component response regulator; LuxR family transcriptional regulator complement(2588806..2589438) Rhodopseudomonas palustris TIE-1 6410062 YP_001991390.1 CDS Rpal_2401 NC_011004.1 2589677 2590285 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pla:Plav_0517 helix-turn-helix-domain containing protein AraC type; AraC family transcriptional regulator 2589677..2590285 Rhodopseudomonas palustris TIE-1 6410063 YP_001991391.1 CDS Rpal_2402 NC_011004.1 2590325 2592250 R KEGG: bja:blr5735 transcriptional regulatory protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; ATPase AAA; Fis family transcriptional regulator complement(2590325..2592250) Rhodopseudomonas palustris TIE-1 6410064 YP_001991392.1 CDS Rpal_2403 NC_011004.1 2592412 2593800 D KEGG: bja:bll5734 ABC transporter nitrate-binding protein; nitrate ABC transporter substrate-binding protein 2592412..2593800 Rhodopseudomonas palustris TIE-1 6410065 YP_001991393.1 CDS Rpal_2404 NC_011004.1 2593948 2594787 D TIGRFAM: nitrate ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: bja:bll5733 nitrate ABC transporter permease protein; nitrate ABC transporter inner membrane subunit 2593948..2594787 Rhodopseudomonas palustris TIE-1 6410066 YP_001991394.1 CDS Rpal_2405 NC_011004.1 2594793 2595680 D KEGG: bja:bll5732 ABC transporter ATP-binding protein; TIGRFAM: nitrate ABC transporter ATPase subunits C and D; PFAM: ABC transporter; SMART: ATPase AAA; nitrate ABC transporter ATPases C and D 2594793..2595680 Rhodopseudomonas palustris TIE-1 6410067 YP_001991395.1 CDS Rpal_2406 NC_011004.1 2595723 2596211 D catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase 2595723..2596211 Rhodopseudomonas palustris TIE-1 6410068 YP_001991396.1 CDS Rpal_2407 NC_011004.1 2596318 2596734 R KEGG: xau:Xaut_0833 hypothetical protein; hypothetical protein complement(2596318..2596734) Rhodopseudomonas palustris TIE-1 6410069 YP_001991397.1 CDS Rpal_2408 NC_011004.1 2596713 2597195 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(2596713..2597195) Rhodopseudomonas palustris TIE-1 6410070 YP_001991398.1 CDS hmuV NC_011004.1 2597399 2598205 R with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit complement(2597399..2598205) Rhodopseudomonas palustris TIE-1 6410071 YP_001991399.1 CDS Rpal_2410 NC_011004.1 2598202 2599284 R PFAM: transport system permease protein; KEGG: nwi:Nwi_2323 ABC-type Fe3+-siderophore transport system permease component; iron ABC transporter permease complement(2598202..2599284) Rhodopseudomonas palustris TIE-1 6410072 YP_001991400.1 CDS Rpal_2411 NC_011004.1 2599281 2600252 R PFAM: periplasmic binding protein; KEGG: bja:blr7077 hemin ABC transporter hemin-binding protein; hemin ABC transporter periplasmic protein complement(2599281..2600252) Rhodopseudomonas palustris TIE-1 6410073 YP_001991401.1 CDS Rpal_2412 NC_011004.1 2600249 2600452 R KEGG: azc:AZC_1578 hypothetical protein; hypothetical protein complement(2600249..2600452) Rhodopseudomonas palustris TIE-1 6410074 YP_001991402.1 CDS Rpal_2413 NC_011004.1 2600786 2602246 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2600786..2602246 Rhodopseudomonas palustris TIE-1 6410075 YP_001991403.1 CDS Rpal_2414 NC_011004.1 2602234 2602905 D PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: hha:Hhal_0382 NAD dependent epimerase/dehydratase family; NAD-dependent epimerase/dehydratase 2602234..2602905 Rhodopseudomonas palustris TIE-1 6410076 YP_001991404.1 CDS Rpal_2415 NC_011004.1 2603123 2605462 D TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bja:bll7076 hemin receptor precursor; TonB-dependent heme/hemoglobin receptor family protein 2603123..2605462 Rhodopseudomonas palustris TIE-1 6410077 YP_001991405.1 CDS Rpal_2416 NC_011004.1 2605540 2605872 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bja:bll7075 hypothetical protein; antibiotic biosynthesis monooxygenase 2605540..2605872 Rhodopseudomonas palustris TIE-1 6410078 YP_001991406.1 CDS Rpal_2417 NC_011004.1 2605889 2606425 D PFAM: protein of unknown function DUF1008; KEGG: bja:bll7074 hypothetical protein; hypothetical protein 2605889..2606425 Rhodopseudomonas palustris TIE-1 6410079 YP_001991407.1 CDS Rpal_2418 NC_011004.1 2606418 2607215 D TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: bja:bll7073 biopolymer transport protein; tonB-system energizer ExbB 2606418..2607215 Rhodopseudomonas palustris TIE-1 6410080 YP_001991408.1 CDS Rpal_2419 NC_011004.1 2607221 2607658 D TIGRFAM: TonB system transport protein ExbD; PFAM: biopolymer transport protein ExbD/TolR; KEGG: bja:bll7072 biopolymer transport protein; TonB system transport protein ExbD 2607221..2607658 Rhodopseudomonas palustris TIE-1 6410081 YP_001991409.1 CDS Rpal_2420 NC_011004.1 2607655 2608512 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: bja:bll7071 TonB protein; TonB family protein 2607655..2608512 Rhodopseudomonas palustris TIE-1 6410082 YP_001991410.1 CDS Rpal_2421 NC_011004.1 2609090 2609311 R KEGG: bbt:BBta_2219 hypothetical protein; hypothetical protein complement(2609090..2609311) Rhodopseudomonas palustris TIE-1 6410083 YP_001991411.1 CDS Rpal_2422 NC_011004.1 2609478 2610266 R PFAM: protein of unknown function DUF81; KEGG: bvi:Bcep1808_3205 protein of unknown function DUF81; hypothetical protein complement(2609478..2610266) Rhodopseudomonas palustris TIE-1 6410084 YP_001991412.1 CDS Rpal_2423 NC_011004.1 2610898 2611917 D KEGG: bra:BRADO1425 conserved hypothetical protein; signal peptide; hypothetical protein 2610898..2611917 Rhodopseudomonas palustris TIE-1 6410085 YP_001991413.1 CDS Rpal_2424 NC_011004.1 2612047 2613432 D KEGG: bbt:BBta_1105 membrane protein of unknown function; hypothetical protein 2612047..2613432 Rhodopseudomonas palustris TIE-1 6410086 YP_001991414.1 CDS Rpal_2425 NC_011004.1 2613437 2614228 D KEGG: bbt:BBta_1104 hypothetical protein; hypothetical protein 2613437..2614228 Rhodopseudomonas palustris TIE-1 6410087 YP_001991415.1 CDS Rpal_2426 NC_011004.1 2614389 2614832 D KEGG: nha:Nham_2144 hypothetical protein; hypothetical protein 2614389..2614832 Rhodopseudomonas palustris TIE-1 6410088 YP_001991416.1 CDS Rpal_2427 NC_011004.1 2614905 2617028 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bja:blr0516 two-component hybrid sensor and regulator; integral membrane sensor hybrid histidine kinase complement(2614905..2617028) Rhodopseudomonas palustris TIE-1 6410089 YP_001991417.1 CDS Rpal_2428 NC_011004.1 2617249 2617563 D PFAM: cytochrome C class I; KEGG: bja:blr6128 cytochrome C552; cytochrome C class I 2617249..2617563 Rhodopseudomonas palustris TIE-1 6410090 YP_001991418.1 CDS Rpal_2429 NC_011004.1 2617657 2618805 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:blr0981 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2617657..2618805 Rhodopseudomonas palustris TIE-1 6410091 YP_001991419.1 CDS Rpal_2430 NC_011004.1 2618945 2620099 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bra:BRADO6880 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2618945..2620099 Rhodopseudomonas palustris TIE-1 6410092 YP_001991420.1 CDS Rpal_2431 NC_011004.1 2620339 2620989 D PFAM: glutathione S-transferase domain; KEGG: bja:blr0983 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 2620339..2620989 Rhodopseudomonas palustris TIE-1 6410093 YP_001991421.1 CDS Rpal_2432 NC_011004.1 2621154 2621978 D SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bra:BRADO6878 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 2621154..2621978 Rhodopseudomonas palustris TIE-1 6410094 YP_001991422.1 CDS Rpal_2433 NC_011004.1 2622099 2622965 D PFAM: protein of unknown function DUF849; KEGG: bbt:BBta_0673 hypothetical protein; hypothetical protein 2622099..2622965 Rhodopseudomonas palustris TIE-1 6410095 YP_001991423.1 CDS Rpal_2434 NC_011004.1 2623131 2624735 D PFAM: AMP-dependent synthetase and ligase; KEGG: bbt:BBta_0674 fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 2623131..2624735 Rhodopseudomonas palustris TIE-1 6410096 YP_001991424.1 CDS Rpal_2435 NC_011004.1 2624975 2626597 D PFAM: carboxyl transferase; KEGG: bbt:BBta_0675 carboxylase; propionyl-CoA carboxylase 2624975..2626597 Rhodopseudomonas palustris TIE-1 6410097 YP_001991425.1 CDS Rpal_2436 NC_011004.1 2626609 2628576 D PFAM: biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: bja:blr0987 3-methylcrotonyl-CoA carboxylase alpha subunit; carbamoyl-phosphate synthase L chain ATP-binding 2626609..2628576 Rhodopseudomonas palustris TIE-1 6410098 YP_001991426.1 CDS Rpal_2437 NC_011004.1 2628698 2629477 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2628698..2629477 Rhodopseudomonas palustris TIE-1 6410099 YP_001991427.1 CDS Rpal_2438 NC_011004.1 2629656 2631194 D PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_B0910 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; AMP-dependent synthetase and ligase 2629656..2631194 Rhodopseudomonas palustris TIE-1 6410100 YP_001991428.1 CDS Rpal_2439 NC_011004.1 2631298 2632734 D KEGG: bja:blr7140 hypothetical protein; hypothetical protein 2631298..2632734 Rhodopseudomonas palustris TIE-1 6410101 YP_001991429.1 CDS Rpal_2440 NC_011004.1 2632830 2634098 R PFAM: beta-lactamase; KEGG: nha:Nham_2704 beta-lactamase; beta-lactamase complement(2632830..2634098) Rhodopseudomonas palustris TIE-1 6410102 YP_001991430.1 CDS Rpal_2441 NC_011004.1 2634329 2635234 D PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: bbt:BBta_2816 catechol 1,2-dioxygenase; intradiol ring-cleavage dioxygenase 2634329..2635234 Rhodopseudomonas palustris TIE-1 6410103 YP_001991431.1 CDS Rpal_2442 NC_011004.1 2635253 2636098 D PFAM: aldo/keto reductase; KEGG: bbt:BBta_2824 aldo/keto reductase; aldo/keto reductase 2635253..2636098 Rhodopseudomonas palustris TIE-1 6410104 YP_001991432.1 CDS Rpal_2443 NC_011004.1 2636288 2637232 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bra:BRADO2478 conserved hypothetical protein; transmembrane protein; hypothetical protein 2636288..2637232 Rhodopseudomonas palustris TIE-1 6410105 YP_001991433.1 CDS Rpal_2444 NC_011004.1 2637435 2639456 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bja:blr2589 hypothetical protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2637435..2639456 Rhodopseudomonas palustris TIE-1 6410106 YP_001991434.1 CDS Rpal_2445 NC_011004.1 2639703 2641133 D PFAM: Aldehyde Dehydrogenase_; KEGG: bbt:BBta_2831 aldehyde dehydrogenase; aldehyde dehydrogenase 2639703..2641133 Rhodopseudomonas palustris TIE-1 6410107 YP_001991435.1 CDS Rpal_2446 NC_011004.1 2641242 2642456 D PFAM: acyltransferase 3; KEGG: azc:AZC_3119 acyltransferase; acyltransferase 3 2641242..2642456 Rhodopseudomonas palustris TIE-1 6410108 YP_001991436.1 CDS Rpal_2447 NC_011004.1 2642562 2642717 D hypothetical protein 2642562..2642717 Rhodopseudomonas palustris TIE-1 6410109 YP_001991437.1 CDS Rpal_2448 NC_011004.1 2642783 2644489 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 2642783..2644489 Rhodopseudomonas palustris TIE-1 6410110 YP_001991438.1 CDS Rpal_2449 NC_011004.1 2644494 2644772 R KEGG: gdi:GDI3488 hypothetical protein; hypothetical protein complement(2644494..2644772) Rhodopseudomonas palustris TIE-1 6410111 YP_001991439.1 CDS Rpal_2450 NC_011004.1 2645171 2646367 D KEGG: nha:Nham_0017 hypothetical protein; hypothetical protein 2645171..2646367 Rhodopseudomonas palustris TIE-1 6410112 YP_001991440.1 CDS Rpal_2451 NC_011004.1 2646503 2646832 D KEGG: bbt:BBta_1417 exported protein of unknown function; hypothetical protein 2646503..2646832 Rhodopseudomonas palustris TIE-1 6410113 YP_001991441.1 CDS Rpal_2452 NC_011004.1 2646941 2647195 R hypothetical protein complement(2646941..2647195) Rhodopseudomonas palustris TIE-1 6410114 YP_001991442.1 CDS Rpal_2453 NC_011004.1 2647381 2648130 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_4242 short-chain dehydrogenases/reductases (SDR) family protein; short-chain dehydrogenase/reductase SDR complement(2647381..2648130) Rhodopseudomonas palustris TIE-1 6410115 YP_001991443.1 CDS Rpal_2454 NC_011004.1 2648243 2648557 D PFAM: regulatory protein ArsR; KEGG: bbt:BBta_4243 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 2648243..2648557 Rhodopseudomonas palustris TIE-1 6410116 YP_001991444.1 CDS Rpal_2455 NC_011004.1 2649251 2652010 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: mlo:mll1534 hypothetical protein; outer membrane autotransporter barrel domain-containing protein 2649251..2652010 Rhodopseudomonas palustris TIE-1 6410117 YP_001991445.1 CDS Rpal_2456 NC_011004.1 2652068 2652754 R TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: bbt:BBta_4386 transporter (YecA family protein with sec-C motif)); yecA family protein complement(2652068..2652754) Rhodopseudomonas palustris TIE-1 6410118 YP_001991446.1 CDS groEL NC_011004.1 2653092 2654729 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is co-regulated with symbiotic nitrogen fixation genes; chaperonin GroEL complement(2653092..2654729) Rhodopseudomonas palustris TIE-1 6410119 YP_001991447.1 CDS groES NC_011004.1 2654895 2655209 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(2654895..2655209) Rhodopseudomonas palustris TIE-1 6410120 YP_001991448.1 CDS Rpal_2459 NC_011004.1 2655652 2655936 D PFAM: Usg family protein; KEGG: nha:Nham_2592 hypothetical protein; Usg family protein 2655652..2655936 Rhodopseudomonas palustris TIE-1 6410121 YP_001991449.1 CDS Rpal_2460 NC_011004.1 2656077 2657762 R KEGG: xfm:Xfasm12_1694 hypothetical protein; hypothetical protein complement(2656077..2657762) Rhodopseudomonas palustris TIE-1 6410122 YP_001991450.1 CDS Rpal_2461 NC_011004.1 2658009 2659259 R PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: bja:blr5621 hypothetical protein; Na+ dependent nucleoside transporter domain-containing protein complement(2658009..2659259) Rhodopseudomonas palustris TIE-1 6410123 YP_001991451.1 CDS Rpal_2462 NC_011004.1 2659440 2660540 D PFAM: ribulose bisphosphate carboxylase large chain; KEGG: rru:Rru_A1998 ribulose-bisphosphate carboxylase-like protein; rubisco-like protein; RuBisCO-like protein 2659440..2660540 Rhodopseudomonas palustris TIE-1 6410124 YP_001991452.1 CDS Rpal_2463 NC_011004.1 2660530 2661027 D PFAM: cupin; KEGG: rru:Rru_A2000 hypothetical protein; cupin 2660530..2661027 Rhodopseudomonas palustris TIE-1 6410125 YP_001991453.1 CDS Rpal_2464 NC_011004.1 2661035 2661454 R KEGG: mma:MM_0269 hypothetical protein; hypothetical protein complement(2661035..2661454) Rhodopseudomonas palustris TIE-1 6410126 YP_001991454.1 CDS Rpal_2465 NC_011004.1 2661549 2662337 D KEGG: ppf:Pput_2833 hypothetical protein; hypothetical protein 2661549..2662337 Rhodopseudomonas palustris TIE-1 6410127 YP_001991455.1 CDS Rpal_2466 NC_011004.1 2662357 2663115 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_5277 oxidoreductase; short-chain dehydrogenase/reductase SDR complement(2662357..2663115) Rhodopseudomonas palustris TIE-1 6410128 YP_001991456.1 CDS Rpal_2467 NC_011004.1 2663148 2663648 R PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_2393 hypothetical protein; N-acetyltransferase GCN5 complement(2663148..2663648) Rhodopseudomonas palustris TIE-1 6410129 YP_001991457.1 CDS Rpal_2468 NC_011004.1 2663667 2664413 R PFAM: 20S proteasome A and B subunits; KEGG: bja:blr5617 hypothetical protein; 20S proteasome subunits A and B complement(2663667..2664413) Rhodopseudomonas palustris TIE-1 6410130 YP_001991458.1 CDS Rpal_2469 NC_011004.1 2664627 2665454 R PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bja:blr5614 hypothetical protein; transglutaminase domain-containing protein complement(2664627..2665454) Rhodopseudomonas palustris TIE-1 6410131 YP_001991459.1 CDS Rpal_2470 NC_011004.1 2665504 2666448 R PFAM: protein of unknown function DUF403; KEGG: bra:BRADO2904 hypothetical protein; hypothetical protein complement(2665504..2666448) Rhodopseudomonas palustris TIE-1 6410132 YP_001991460.1 CDS Rpal_2471 NC_011004.1 2666595 2668013 R PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: bbt:BBta_5273 hypothetical protein; hypothetical protein complement(2666595..2668013) Rhodopseudomonas palustris TIE-1 6410133 YP_001991461.1 CDS Rpal_2472 NC_011004.1 2668237 2668974 D PFAM: molybdopterin binding domain; KEGG: bra:BRADO2908 conserved hypothetical protein; competence damage protein; molybdopterin binding domain; molybdopterin binding domain-containing protein 2668237..2668974 Rhodopseudomonas palustris TIE-1 6410134 YP_001991462.1 CDS Rpal_2473 NC_011004.1 2669128 2669649 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 2669128..2669649 Rhodopseudomonas palustris TIE-1 6410135 YP_001991463.1 CDS Rpal_2474 NC_011004.1 2669978 2670652 D KEGG: nha:Nham_2589 hypothetical protein; hypothetical protein 2669978..2670652 Rhodopseudomonas palustris TIE-1 6410136 YP_001991464.1 CDS Rpal_2475 NC_011004.1 2670847 2671869 R catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(2670847..2671869) Rhodopseudomonas palustris TIE-1 6410137 YP_001991465.1 CDS Rpal_2476 NC_011004.1 2672021 2672740 D PFAM: glutathione S-transferase domain; KEGG: bja:bll5607 glutathione S-transferase; glutathione S-transferase domain-containing protein 2672021..2672740 Rhodopseudomonas palustris TIE-1 6410138 YP_001991466.1 CDS Rpal_2477 NC_011004.1 2673160 2673780 D PFAM: DSBA oxidoreductase; KEGG: bja:bll5606 2-hydroxychromene-2-carboxylate isomerase; DSBA oxidoreductase 2673160..2673780 Rhodopseudomonas palustris TIE-1 6410139 YP_001991467.1 CDS Rpal_2478 NC_011004.1 2673780 2674754 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_5263 oxidoreductase; alcohol dehydrogenase zinc-binding domain-containing protein 2673780..2674754 Rhodopseudomonas palustris TIE-1 6410140 YP_001991468.1 CDS Rpal_2479 NC_011004.1 2674846 2675313 D PFAM: MaoC domain protein dehydratase; KEGG: nha:Nham_2554 MaoC-like dehydratase; MaoC domain-containing protein dehydratase 2674846..2675313 Rhodopseudomonas palustris TIE-1 6410141 YP_001991469.1 CDS Rpal_2480 NC_011004.1 2675332 2676249 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_3584 3-oxo-(acyl) acyl carrier protein reductase; short-chain dehydrogenase/reductase SDR 2675332..2676249 Rhodopseudomonas palustris TIE-1 6410142 YP_001991470.1 CDS Rpal_2481 NC_011004.1 2676453 2677688 D PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nha:Nham_2553 HI0933-like protein; hypothetical protein 2676453..2677688 Rhodopseudomonas palustris TIE-1 6410143 YP_001991471.1 CDS Rpal_2482 NC_011004.1 2677695 2678006 R KEGG: bja:bsr4462 hypothetical protein; hypothetical protein complement(2677695..2678006) Rhodopseudomonas palustris TIE-1 6410144 YP_001991472.1 CDS Rpal_2483 NC_011004.1 2678018 2678674 R PFAM: regulatory protein TetR; KEGG: bcm:Bcenmc03_5533 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2678018..2678674) Rhodopseudomonas palustris TIE-1 6410145 YP_001991473.1 CDS Rpal_2484 NC_011004.1 2678778 2680595 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2552 ABC transporter; ABC transporter complement(2678778..2680595) Rhodopseudomonas palustris TIE-1 6410146 YP_001991474.1 CDS Rpal_2485 NC_011004.1 2680606 2681082 R PFAM: protein of unknown function DUF188; KEGG: bja:bll3966 hypothetical protein; hypothetical protein complement(2680606..2681082) Rhodopseudomonas palustris TIE-1 6410147 YP_001991475.1 CDS Rpal_2486 NC_011004.1 2681186 2681986 D KEGG: bbt:BBta_3593 hypothetical protein; hypothetical protein 2681186..2681986 Rhodopseudomonas palustris TIE-1 6410148 YP_001991476.1 CDS Rpal_2487 NC_011004.1 2682181 2683395 D PFAM: extracellular ligand-binding receptor; KEGG: bbt:BBta_5091 branched-chain amino acid ABC transporter substrate-binding protein; extracellular ligand-binding receptor 2682181..2683395 Rhodopseudomonas palustris TIE-1 6410149 YP_001991477.1 CDS Rpal_2488 NC_011004.1 2683629 2686004 R PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bja:bll3968 carbon monoxide dehydrogenase large chain; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase complement(2683629..2686004) Rhodopseudomonas palustris TIE-1 6410150 YP_001991478.1 CDS Rpal_2489 NC_011004.1 2686246 2687313 D PFAM: Ppx/GppA phosphatase; KEGG: bja:blr3969 probable exopolyphosphatase; Ppx/GppA phosphatase 2686246..2687313 Rhodopseudomonas palustris TIE-1 6410151 YP_001991479.1 CDS Rpal_2490 NC_011004.1 2687340 2687915 R KEGG: pde:Pden_1824 hypothetical protein; hypothetical protein complement(2687340..2687915) Rhodopseudomonas palustris TIE-1 6410152 YP_001991480.1 CDS Rpal_2491 NC_011004.1 2688113 2688826 D PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: bra:BRADO3151 ribosomal RNA large subunit (23S) methyltransferase; ribosomal RNA methyltransferase RrmJ/FtsJ 2688113..2688826 Rhodopseudomonas palustris TIE-1 6410153 YP_001991481.1 CDS Rpal_2492 NC_011004.1 2688989 2689168 D hypothetical protein 2688989..2689168 Rhodopseudomonas palustris TIE-1 6410154 YP_001991482.1 CDS Rpal_2493 NC_011004.1 2689185 2690660 R PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_3608 multidrug efflux protein; major facilitator superfamily protein complement(2689185..2690660) Rhodopseudomonas palustris TIE-1 6410155 YP_001991483.1 CDS Rpal_2494 NC_011004.1 2690852 2691100 D KEGG: bbt:BBta_3609 exported protein of unknown function; hypothetical protein 2690852..2691100 Rhodopseudomonas palustris TIE-1 6410156 YP_001991484.1 CDS Rpal_2495 NC_011004.1 2691454 2692950 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 2691454..2692950 Rhodopseudomonas palustris TIE-1 6410157 YP_001991485.1 CDS Rpal_2496 NC_011004.1 2693248 2694273 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: bbt:BBta_3611 NADP-dependent oxidoreductase; alcohol dehydrogenase zinc-binding domain-containing protein 2693248..2694273 Rhodopseudomonas palustris TIE-1 6410158 YP_001991486.1 CDS Rpal_2497 NC_011004.1 2694466 2695767 D PFAM: Fmu (Sun) domain protein; KEGG: bra:BRADO3168 SUN-family protein, RNA methyltransferase; Fmu (Sun) domain-containing protein 2694466..2695767 Rhodopseudomonas palustris TIE-1 6410159 YP_001991487.1 CDS guaA NC_011004.1 2696001 2697698 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2696001..2697698 Rhodopseudomonas palustris TIE-1 6410160 YP_001991488.1 CDS Rpal_2499 NC_011004.1 2697845 2699236 D hypothetical protein 2697845..2699236 Rhodopseudomonas palustris TIE-1 6410161 YP_001991489.1 CDS Rpal_2501 NC_011004.1 2699712 2700620 R hypothetical protein complement(2699712..2700620) Rhodopseudomonas palustris TIE-1 6410163 YP_001991490.1 CDS Rpal_2502 NC_011004.1 2701196 2702410 R KEGG: pau:PA14_46460 hypothetical protein; hypothetical protein complement(2701196..2702410) Rhodopseudomonas palustris TIE-1 6410164 YP_001991491.1 CDS Rpal_2503 NC_011004.1 2702700 2703029 R KEGG: csa:Csal_0225 hypothetical protein; hypothetical protein complement(2702700..2703029) Rhodopseudomonas palustris TIE-1 6410165 YP_001991492.1 CDS Rpal_2504 NC_011004.1 2703357 2704553 R PFAM: sodium/glutamate symporter; KEGG: oan:Oant_4810 sodium/glutamate symporter; sodium/glutamate symporter complement(2703357..2704553) Rhodopseudomonas palustris TIE-1 6410166 YP_001991493.1 CDS Rpal_2505 NC_011004.1 2704731 2705159 R PFAM: PilT protein domain protein; KEGG: xau:Xaut_4574 PilT protein domain protein; PilT protein domain-containing protein complement(2704731..2705159) Rhodopseudomonas palustris TIE-1 6410167 YP_001991494.1 CDS Rpal_2506 NC_011004.1 2705159 2705458 R KEGG: mlo:msr5902 hypothetical protein; hypothetical protein complement(2705159..2705458) Rhodopseudomonas palustris TIE-1 6410168 YP_001991495.1 CDS Rpal_2507 NC_011004.1 2705650 2706615 R PFAM: protein of unknown function UPF0074; hypothetical protein; KEGG: bja:blr7860 hypothetical protein; hypothetical protein complement(2705650..2706615) Rhodopseudomonas palustris TIE-1 6410169 YP_001991496.1 CDS Rpal_2508 NC_011004.1 2706714 2707358 D PFAM: glutathione S-transferase domain; KEGG: bja:bll7859 glutathione S-transferase; glutathione S-transferase domain-containing protein 2706714..2707358 Rhodopseudomonas palustris TIE-1 6410170 YP_001991497.1 CDS Rpal_2509 NC_011004.1 2707587 2708030 D KEGG: azo:azo1164 hypothetical protein; hypothetical protein 2707587..2708030 Rhodopseudomonas palustris TIE-1 6410171 YP_001991498.1 CDS Rpal_2510 NC_011004.1 2708105 2708665 D PFAM: flavin reductase domain protein FMN-binding; KEGG: bbt:BBta_7416 hypothetical protein; flavin reductase domain-containing protein 2708105..2708665 Rhodopseudomonas palustris TIE-1 6410172 YP_001991499.1 CDS Rpal_2511 NC_011004.1 2708713 2710515 R KEGG: sme:SMb20103 monooxygenase protein; monooxygenase protein complement(2708713..2710515) Rhodopseudomonas palustris TIE-1 6410173 YP_001991500.1 CDS Rpal_2512 NC_011004.1 2710703 2711674 R hypothetical protein complement(2710703..2711674) Rhodopseudomonas palustris TIE-1 6410174 YP_001991501.1 CDS Rpal_2513 NC_011004.1 2711788 2713266 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(2711788..2713266) Rhodopseudomonas palustris TIE-1 6410175 YP_001991502.1 CDS Rpal_2514 NC_011004.1 2713450 2713797 D PFAM: arsenate reductase and related; KEGG: cak:Caul_2487 arsenate reductase and related; arsenate reductase-like protein 2713450..2713797 Rhodopseudomonas palustris TIE-1 6410176 YP_001991503.1 CDS Rpal_2515 NC_011004.1 2713836 2714012 D hypothetical protein 2713836..2714012 Rhodopseudomonas palustris TIE-1 6410177 YP_001991504.1 CDS Rpal_2516 NC_011004.1 2713993 2714640 D KEGG: cch:Cag_0427 hypothetical protein; hypothetical protein 2713993..2714640 Rhodopseudomonas palustris TIE-1 6410178 YP_001991505.1 CDS Rpal_2517 NC_011004.1 2714811 2715581 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr4037 ABC transporter ATP-binding protein; ABC transporter 2714811..2715581 Rhodopseudomonas palustris TIE-1 6410179 YP_001991506.1 CDS Rpal_2518 NC_011004.1 2715574 2716320 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_3756 branched-chain amino acid transport system ATP-binding protein; ABC transporter 2715574..2716320 Rhodopseudomonas palustris TIE-1 6410180 YP_001991507.1 CDS Rpal_2519 NC_011004.1 2716359 2717234 D PFAM: inner-membrane translocator; KEGG: bra:BRADO3733 ABC transporter permease protein; branched-chain amino acid transport permease; inner-membrane translocator 2716359..2717234 Rhodopseudomonas palustris TIE-1 6410181 YP_001991508.1 CDS Rpal_2520 NC_011004.1 2717236 2718207 D PFAM: inner-membrane translocator; KEGG: bbt:BBta_3759 membrane protein of unknown function with ABC transporter domain; inner-membrane translocator 2717236..2718207 Rhodopseudomonas palustris TIE-1 6410182 YP_001991509.1 CDS Rpal_2521 NC_011004.1 2718358 2720970 R KEGG: ang:An01g09380 hypothetical protein Pfam: Extensin_2 Troponin PROSITE: HEXAPEP_TRANSFERASES ALA_RICH ARG_RICH GLN_RICH GLU_RICH PRO_RICH; hypothetical protein complement(2718358..2720970) Rhodopseudomonas palustris TIE-1 6410183 YP_001991510.1 CDS Rpal_2522 NC_011004.1 2721547 2722191 D PFAM: protein of unknown function DUF47; KEGG: bbt:BBta_3760 low-affinity phosphate transport accessory protein; hypothetical protein 2721547..2722191 Rhodopseudomonas palustris TIE-1 6410184 YP_001991511.1 CDS Rpal_2523 NC_011004.1 2722206 2723222 D PFAM: phosphate transporter; KEGG: nwi:Nwi_2031 phosphate transporter; phosphate transporter 2722206..2723222 Rhodopseudomonas palustris TIE-1 6410185 YP_001991512.1 CDS Rpal_2524 NC_011004.1 2723240 2723551 R TIGRFAM: addiction module antidote protein, HigA family; KEGG: btr:Btr_0496 virulence-associated protein; XRE family transcriptional regulator complement(2723240..2723551) Rhodopseudomonas palustris TIE-1 6410186 YP_001991513.1 CDS Rpal_2525 NC_011004.1 2723594 2723869 R PFAM: plasmid maintenance system killer; KEGG: bhe:BH06630 hypothetical genomic island protein; plasmid maintenance system killer protein complement(2723594..2723869) Rhodopseudomonas palustris TIE-1 6410187 YP_001991514.1 CDS Rpal_2526 NC_011004.1 2723958 2724272 R PFAM: small multidrug resistance protein; KEGG: nha:Nham_1679 small multidrug resistance protein; small multidrug resistance protein complement(2723958..2724272) Rhodopseudomonas palustris TIE-1 6410188 YP_001991515.1 CDS Rpal_2527 NC_011004.1 2724503 2726128 D TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: nwi:Nwi_2027 peptide chain release factor 3; peptide chain release factor 3 2724503..2726128 Rhodopseudomonas palustris TIE-1 6410189 YP_001991516.1 CDS Rpal_2528 NC_011004.1 2727164 2730139 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mac:MA0188 hypothetical protein; hypothetical protein 2727164..2730139 Rhodopseudomonas palustris TIE-1 6410190 YP_001991517.1 CDS Rpal_2529 NC_011004.1 2730323 2730463 R hypothetical protein complement(2730323..2730463) Rhodopseudomonas palustris TIE-1 6410191 YP_001991518.1 CDS Rpal_2530 NC_011004.1 2730460 2732286 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1065 TPR repeat protein; hypothetical protein complement(2730460..2732286) Rhodopseudomonas palustris TIE-1 6410192 YP_001991519.1 CDS Rpal_2531 NC_011004.1 2732559 2733017 R KEGG: fal:FRAAL3046 hypothetical protein; hypothetical protein complement(2732559..2733017) Rhodopseudomonas palustris TIE-1 6410193 YP_001991520.1 CDS Rpal_2532 NC_011004.1 2733298 2734626 D KEGG: nha:Nham_2170 tetratricopeptide TPR_2; hypothetical protein 2733298..2734626 Rhodopseudomonas palustris TIE-1 6410194 YP_001991521.1 CDS Rpal_2533 NC_011004.1 2734638 2736359 D KEGG: nwi:Nwi_1759 hypothetical protein; hypothetical protein 2734638..2736359 Rhodopseudomonas palustris TIE-1 6410195 YP_001991522.1 CDS Rpal_2534 NC_011004.1 2736495 2738789 D PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: nha:Nham_2169 adenylate/guanylate cyclase; adenylate/guanylate cyclase with Chase sensor 2736495..2738789 Rhodopseudomonas palustris TIE-1 6410196 YP_001991523.1 CDS Rpal_2535 NC_011004.1 2738804 2740222 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: ccr:CC_0759 sensory box histidine kinase FixL; multi-sensor signal transduction histidine kinase complement(2738804..2740222) Rhodopseudomonas palustris TIE-1 6410197 YP_001991524.1 CDS Rpal_2536 NC_011004.1 2740416 2741012 R KEGG: xau:Xaut_4923 hypothetical protein; hypothetical protein complement(2740416..2741012) Rhodopseudomonas palustris TIE-1 6410198 YP_001991525.1 CDS Rpal_2537 NC_011004.1 2741232 2741927 D PFAM: regulatory protein TetR; KEGG: bja:blr4685 transcriptional regulatory protein; TetR family transcriptional regulator 2741232..2741927 Rhodopseudomonas palustris TIE-1 6410199 YP_001991526.1 CDS Rpal_2538 NC_011004.1 2742400 2743056 D KEGG: bja:blr4686 hypothetical protein; hypothetical protein 2742400..2743056 Rhodopseudomonas palustris TIE-1 6410200 YP_001991527.1 CDS Rpal_2539 NC_011004.1 2743053 2743529 D KEGG: mlo:mlr2406 hypothetical protein; hypothetical protein 2743053..2743529 Rhodopseudomonas palustris TIE-1 6410201 YP_001991528.1 CDS Rpal_2540 NC_011004.1 2743908 2746586 D structural flagella protein; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellin 2743908..2746586 Rhodopseudomonas palustris TIE-1 6410202 YP_001991529.1 CDS Rpal_2541 NC_011004.1 2746655 2747209 D KEGG: bra:BRADO7004 flagellar biosynthesis repressor FlbT; hypothetical protein 2746655..2747209 Rhodopseudomonas palustris TIE-1 6410203 YP_001991530.1 CDS Rpal_2542 NC_011004.1 2747338 2748084 D PFAM: regulatory protein LuxR; KEGG: bra:BRADO1260 transcriptional regulatory protein, LuxR family; LuxR family transcriptional regulator 2747338..2748084 Rhodopseudomonas palustris TIE-1 6410204 YP_001991531.1 CDS Rpal_2543 NC_011004.1 2748358 2748963 D PFAM: regulatory protein LuxR; KEGG: azo:azo1777 hypothetical LuxR-family transcriptional regulator; LuxR family transcriptional regulator 2748358..2748963 Rhodopseudomonas palustris TIE-1 6410205 YP_001991532.1 CDS Rpal_2544 NC_011004.1 2748994 2749986 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: xau:Xaut_4663 helix-turn-helix-domain containing protein AraC type; AraC family transcriptional regulator complement(2748994..2749986) Rhodopseudomonas palustris TIE-1 6410206 YP_001991533.1 CDS Rpal_2545 NC_011004.1 2750140 2751831 D PFAM: AMP-dependent synthetase and ligase; KEGG: bcm:Bcenmc03_6706 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2750140..2751831 Rhodopseudomonas palustris TIE-1 6410207 YP_001991534.1 CDS Rpal_2546 NC_011004.1 2751850 2752617 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xau:Xaut_4664 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2751850..2752617 Rhodopseudomonas palustris TIE-1 6410208 YP_001991535.1 CDS Rpal_2547 NC_011004.1 2752676 2753863 D KEGG: xau:Xaut_4665 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 2752676..2753863 Rhodopseudomonas palustris TIE-1 6410209 YP_001991536.1 CDS Rpal_2548 NC_011004.1 2753871 2754998 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rle:pRL100302 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2753871..2754998 Rhodopseudomonas palustris TIE-1 6410210 YP_001991537.1 CDS Rpal_2549 NC_011004.1 2755364 2755912 D PFAM: cytochrome B561; KEGG: cvi:CV_3278 probable cytochrome b561; cytochrome B561 2755364..2755912 Rhodopseudomonas palustris TIE-1 6410211 YP_001991538.1 CDS Rpal_2550 NC_011004.1 2755981 2758308 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cff:CFF8240_1206 TonB-dependent receptor; TonB-dependent receptor plug complement(2755981..2758308) Rhodopseudomonas palustris TIE-1 6410212 YP_001991539.1 CDS Rpal_2551 NC_011004.1 2758637 2759722 D PFAM: periplasmic binding protein; KEGG: rle:RL2022 solute-binding component of cationic transporter; periplasmic binding protein 2758637..2759722 Rhodopseudomonas palustris TIE-1 6410213 YP_001991540.1 CDS Rpal_2552 NC_011004.1 2759719 2760810 D PFAM: transport system permease protein; KEGG: pde:Pden_1169 transport system permease protein; transport system permease 2759719..2760810 Rhodopseudomonas palustris TIE-1 6410214 YP_001991541.1 CDS Rpal_2553 NC_011004.1 2760807 2761571 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pde:Pden_1170 ABC transporter; ABC transporter 2760807..2761571 Rhodopseudomonas palustris TIE-1 6410215 YP_001991542.1 CDS Rpal_2554 NC_011004.1 2761573 2762202 R KEGG: rle:RL2017 hypothetical protein; hypothetical protein complement(2761573..2762202) Rhodopseudomonas palustris TIE-1 6410216 YP_001991543.1 CDS Rpal_2555 NC_011004.1 2762199 2762804 R KEGG: rha:RHA1_ro03621 hypothetical protein; hypothetical protein complement(2762199..2762804) Rhodopseudomonas palustris TIE-1 6410217 YP_001991544.1 CDS Rpal_2556 NC_011004.1 2762818 2763318 R KEGG: rle:RL2016 hypothetical protein; hypothetical protein complement(2762818..2763318) Rhodopseudomonas palustris TIE-1 6410218 YP_001991545.1 CDS Rpal_2557 NC_011004.1 2763945 2764385 D PFAM: cytochrome C prime; KEGG: azc:AZC_1821 cytochrome C precursor; cytochrome C prime 2763945..2764385 Rhodopseudomonas palustris TIE-1 6410219 YP_001991546.1 CDS Rpal_2558 NC_011004.1 2764389 2765063 D PFAM: cytochrome B561; KEGG: maq:Maqu_0326 cytochrome b561; cytochrome B561 2764389..2765063 Rhodopseudomonas palustris TIE-1 6410220 YP_001991547.1 CDS Rpal_2559 NC_011004.1 2765095 2765880 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2765095..2765880) Rhodopseudomonas palustris TIE-1 6410221 YP_001991548.1 CDS Rpal_2560 NC_011004.1 2765905 2766699 R PFAM: coenzyme A transferase; KEGG: rxy:Rxyl_1583 glutaconate CoA-transferase; coenzyme A transferase complement(2765905..2766699) Rhodopseudomonas palustris TIE-1 6410222 YP_001991549.1 CDS Rpal_2561 NC_011004.1 2766696 2767691 R PFAM: coenzyme A transferase; KEGG: afu:AF1199 glutaconate CoA-transferase, subunit A; coenzyme A transferase complement(2766696..2767691) Rhodopseudomonas palustris TIE-1 6410223 YP_001991550.1 CDS Rpal_2562 NC_011004.1 2767819 2768811 R PFAM: conserved hypothetical protein; KEGG: pna:Pnap_2117 uncharacterized protein UPF0065; hypothetical protein complement(2767819..2768811) Rhodopseudomonas palustris TIE-1 6410224 YP_001991551.1 CDS Rpal_2563 NC_011004.1 2768889 2770391 R PFAM: protein of unknown function DUF112 transmembrane; KEGG: rme:Rmet_3964 protein of unknown function DUF112, transmembrane; hypothetical protein complement(2768889..2770391) Rhodopseudomonas palustris TIE-1 6410225 YP_001991552.1 CDS Rpal_2564 NC_011004.1 2770391 2770867 R PFAM: protein of unknown function DUF1468; KEGG: rso:RSc0794 probable transmembrane protein; hypothetical protein complement(2770391..2770867) Rhodopseudomonas palustris TIE-1 6410226 YP_001991553.1 CDS Rpal_2565 NC_011004.1 2770951 2771478 D hypothetical protein 2770951..2771478 Rhodopseudomonas palustris TIE-1 6410227 YP_001991554.1 CDS Rpal_2566 NC_011004.1 2771582 2772475 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_4287 transcriptional regulatory protein, LysR family; LysR family transcriptional regulator 2771582..2772475 Rhodopseudomonas palustris TIE-1 6410228 YP_001991555.1 CDS Rpal_2567 NC_011004.1 2772643 2773917 D TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: bra:BRADO3420 4-aminobutyrate aminotransferase ((S)-3-amino-2-methylpropionate transaminase); 4-aminobutyrate aminotransferase 2772643..2773917 Rhodopseudomonas palustris TIE-1 6410229 YP_001991556.1 CDS Rpal_2568 NC_011004.1 2773946 2775406 D TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bra:BRADO0028 succinate-semialdehyde dehydrogenase [NADP+] (SSDH); succinate-semialdehyde dehydrogenase 2773946..2775406 Rhodopseudomonas palustris TIE-1 6410230 YP_001991557.1 CDS Rpal_2569 NC_011004.1 2775456 2776754 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 2775456..2776754 Rhodopseudomonas palustris TIE-1 6410231 YP_001991558.1 CDS Rpal_2570 NC_011004.1 2776754 2778343 D thiamine-pyrophosphate requiring enzyme; hypothetical protein 2776754..2778343 Rhodopseudomonas palustris TIE-1 6410232 YP_001991559.1 CDS Rpal_2571 NC_011004.1 2778422 2780011 D PFAM: extracellular solute-binding protein family 5; KEGG: pol:Bpro_0426 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 2778422..2780011 Rhodopseudomonas palustris TIE-1 6410233 YP_001991560.1 CDS Rpal_2572 NC_011004.1 2780008 2781030 D PFAM: ABC transporter inner membrane protein; KEGG: pol:Bpro_0425 ABC transporter inner membrane protein; ABC transporter inner membrane protein 2780008..2781030 Rhodopseudomonas palustris TIE-1 6410234 YP_001991561.1 CDS Rpal_2573 NC_011004.1 2781043 2781882 D PFAM: ABC transporter inner membrane protein; KEGG: mrd:Mrad2831_3219 ABC transporter inner membrane protein; ABC transporter inner membrane protein 2781043..2781882 Rhodopseudomonas palustris TIE-1 6410235 YP_001991562.1 CDS Rpal_2574 NC_011004.1 2781879 2783537 D PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_0751 ABC transporter; ABC transporter 2781879..2783537 Rhodopseudomonas palustris TIE-1 6410236 YP_001991563.1 CDS Rpal_2575 NC_011004.1 2783612 2785189 D KEGG: bbt:BBta_7627 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2783612..2785189 Rhodopseudomonas palustris TIE-1 6410237 YP_001991564.1 CDS Rpal_2576 NC_011004.1 2785561 2786637 D PFAM: Rare lipoprotein A; nuclease (SNase domain protein); KEGG: bja:blr0372 succinoglycan biosynthesis protein; nuclease 2785561..2786637 Rhodopseudomonas palustris TIE-1 6410238 YP_001991565.1 CDS Rpal_2577 NC_011004.1 2786836 2788932 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: eba:ebA609 cation transport ATPase; ATPase P complement(2786836..2788932) Rhodopseudomonas palustris TIE-1 6410239 YP_001991566.1 CDS Rpal_2578 NC_011004.1 2788929 2789267 R KEGG: shw:Sputw3181_0749 hypothetical protein; hypothetical protein complement(2788929..2789267) Rhodopseudomonas palustris TIE-1 6410240 YP_001991567.1 CDS Rpal_2579 NC_011004.1 2789260 2789601 R KEGG: shw:Sputw3181_0748 hypothetical protein; hypothetical protein complement(2789260..2789601) Rhodopseudomonas palustris TIE-1 6410241 YP_001991568.1 CDS Rpal_2580 NC_011004.1 2789588 2789911 R KEGG: tcr:507957.200 mucin-associated surface protein (MASP), Pfam: Prosystemin PROSITE: ALA_RICH; hypothetical protein complement(2789588..2789911) Rhodopseudomonas palustris TIE-1 6410242 YP_001991569.1 CDS Rpal_2581 NC_011004.1 2789929 2790261 R KEGG: eba:ebB16 hypothetical protein; hypothetical protein complement(2789929..2790261) Rhodopseudomonas palustris TIE-1 6410243 YP_001991570.1 CDS Rpal_2582 NC_011004.1 2790269 2790769 R KEGG: eba:ebA616 hypothetical protein; hypothetical protein complement(2790269..2790769) Rhodopseudomonas palustris TIE-1 6410244 YP_001991571.1 CDS Rpal_2583 NC_011004.1 2791266 2791757 D PFAM: ferric-uptake regulator; KEGG: bra:BRADO0064 ferric uptake regulation protein, FUR family; Fur family ferric uptake regulator 2791266..2791757 Rhodopseudomonas palustris TIE-1 6410245 YP_001991572.1 CDS Rpal_2584 NC_011004.1 2791883 2793256 R PFAM: FAD dependent oxidoreductase; KEGG: msm:MSMEG_0481 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2791883..2793256) Rhodopseudomonas palustris TIE-1 6410246 YP_001991573.1 CDS Rpal_2585 NC_011004.1 2793311 2794990 R PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: mpt:Mpe_A3651 dihydroxy-acid dehydratase; Dihydroxy-acid dehydratase complement(2793311..2794990) Rhodopseudomonas palustris TIE-1 6410247 YP_001991574.1 CDS Rpal_2586 NC_011004.1 2795057 2796364 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: msm:MSMEG_0483 shikimate transporter; major facilitator superfamily protein complement(2795057..2796364) Rhodopseudomonas palustris TIE-1 6410248 YP_001991575.1 CDS Rpal_2587 NC_011004.1 2796773 2797450 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rru:Rru_A3003 transcriptional regulator, GntR family; GntR family transcriptional regulator 2796773..2797450 Rhodopseudomonas palustris TIE-1 6410249 YP_001991576.1 CDS Rpal_2588 NC_011004.1 2797489 2798109 R KEGG: eca:ECA3961 hypothetical protein; hypothetical protein complement(2797489..2798109) Rhodopseudomonas palustris TIE-1 6410250 YP_001991577.1 CDS Rpal_2589 NC_011004.1 2798110 2799120 R KEGG: ang:An18g00710 hypothetical protein Pfam: MTS; hypothetical protein complement(2798110..2799120) Rhodopseudomonas palustris TIE-1 6410251 YP_001991578.1 CDS Rpal_2590 NC_011004.1 2799365 2800543 R KEGG: dar:Daro_1003 40-residue YVTN beta-propeller repeat; hypothetical protein complement(2799365..2800543) Rhodopseudomonas palustris TIE-1 6410252 YP_001991579.1 CDS Rpal_2591 NC_011004.1 2800585 2801976 R PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0793 nitrogenase; nitrogenase complement(2800585..2801976) Rhodopseudomonas palustris TIE-1 6410253 YP_001991580.1 CDS Rpal_2592 NC_011004.1 2801976 2803511 R PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0794 nitrogenase; nitrogenase complement(2801976..2803511) Rhodopseudomonas palustris TIE-1 6410254 YP_001991581.1 CDS Rpal_2593 NC_011004.1 2803736 2804929 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: bbt:BBta_2509 O-acetylhomoserine sulfhydrylase; Cys/Met metabolism pyridoxal-phosphate-dependent protein complement(2803736..2804929) Rhodopseudomonas palustris TIE-1 6410255 YP_001991582.1 CDS Rpal_2594 NC_011004.1 2805221 2806522 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: rru:Rru_A0774 O-acetylhomoserine/O-acetylserine sulfhydrylase; O-acetylhomoserine aminocarboxypropyltransferase 2805221..2806522 Rhodopseudomonas palustris TIE-1 6410256 YP_001991583.1 CDS Rpal_2595 NC_011004.1 2806687 2807175 R PFAM: regulatory protein AsnC/Lrp family; KEGG: bbt:BBta_4847 transcriptional regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator complement(2806687..2807175) Rhodopseudomonas palustris TIE-1 6410257 YP_001991584.1 CDS Rpal_2596 NC_011004.1 2807457 2807954 R PFAM: Acireductone dioxygenase ARD; cupin; KEGG: dac:Daci_3175 acireductone dioxygenase ARD; Acireductone dioxygenase ARD complement(2807457..2807954) Rhodopseudomonas palustris TIE-1 6410258 YP_001991585.1 CDS Rpal_2597 NC_011004.1 2807997 2808866 R KEGG: rru:Rru_A0795 nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein; nitrogenase iron protein complement(2807997..2808866) Rhodopseudomonas palustris TIE-1 6410259 YP_001991586.1 CDS Rpal_2598 NC_011004.1 2808912 2809835 R PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rru:Rru_A0796 radical SAM; radical SAM domain-containing protein complement(2808912..2809835) Rhodopseudomonas palustris TIE-1 6410260 YP_001991587.1 CDS Rpal_2599 NC_011004.1 2809832 2810215 R PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: cbe:Cbei_2005 nitrogenase cofactor biosynthesis protein NifB; dinitrogenase iron-molybdenum cofactor biosynthesis protein complement(2809832..2810215) Rhodopseudomonas palustris TIE-1 6410261 YP_001991588.1 CDS Rpal_2600 NC_011004.1 2810685 2812082 D PFAM: CBS domain containing protein; pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: spe:Spro_1627 pyridoxal-5'-phosphate-dependent protein beta subunit; pyridoxal-5'-phosphate-dependent protein beta subunit 2810685..2812082 Rhodopseudomonas palustris TIE-1 6410262 YP_001991589.1 CDS Rpal_2601 NC_011004.1 2812084 2813256 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rru:Rru_A0786 cystathionine gamma-synthase; cystathionine gamma-synthase 2812084..2813256 Rhodopseudomonas palustris TIE-1 6410263 YP_001991590.1 CDS Rpal_2602 NC_011004.1 2813358 2814404 R PFAM: 2OG-Fe(II) oxygenase; KEGG: bbt:BBta_2508 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase complement(2813358..2814404) Rhodopseudomonas palustris TIE-1 6410264 YP_001991591.1 CDS Rpal_2603 NC_011004.1 2814897 2815679 D TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: oan:Oant_3792 lipoprotein, YaeC family; lipoprotein 2814897..2815679 Rhodopseudomonas palustris TIE-1 6410265 YP_001991592.1 CDS Rpal_2604 NC_011004.1 2815757 2816821 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: oan:Oant_3791 ABC transporter; ABC transporter 2815757..2816821 Rhodopseudomonas palustris TIE-1 6410266 YP_001991593.1 CDS Rpal_2605 NC_011004.1 2816775 2817476 D PFAM: ABC transporter inner membrane protein; KEGG: oan:Oant_3790 ABC transporter inner membrane protein; ABC transporter inner membrane protein 2816775..2817476 Rhodopseudomonas palustris TIE-1 6410267 YP_001991594.1 CDS Rpal_2606 NC_011004.1 2817512 2818825 D KEGG: rru:Rru_A0774 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-acetylhomoserine/O-acetylserine sulfhydrylase 2817512..2818825 Rhodopseudomonas palustris TIE-1 6410268 YP_001991595.1 CDS Rpal_2607 NC_011004.1 2818854 2820359 D PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0794 nitrogenase; nitrogenase 2818854..2820359 Rhodopseudomonas palustris TIE-1 6410269 YP_001991596.1 CDS Rpal_2608 NC_011004.1 2820372 2821751 D PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0793 nitrogenase; nitrogenase 2820372..2821751 Rhodopseudomonas palustris TIE-1 6410270 YP_001991597.1 CDS Rpal_2609 NC_011004.1 2821768 2822868 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: bja:blr5707 threonine aldolase; threonine aldolase complement(2821768..2822868) Rhodopseudomonas palustris TIE-1 6410271 YP_001991598.1 CDS Rpal_2610 NC_011004.1 2823169 2823420 D KEGG: atc:AGR_L_1715 hypothetical protein; hypothetical protein 2823169..2823420 Rhodopseudomonas palustris TIE-1 6410272 YP_001991599.1 CDS Rpal_2611 NC_011004.1 2823540 2824643 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bja:bll3558 two-component hybrid sensor and regulator; integral membrane sensor signal transduction histidine kinase complement(2823540..2824643) Rhodopseudomonas palustris TIE-1 6410273 YP_001991600.1 CDS Rpal_2612 NC_011004.1 2824640 2825326 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:bll3559 two-component response regulator; winged helix family two component transcriptional regulator complement(2824640..2825326) Rhodopseudomonas palustris TIE-1 6410274 YP_001991601.1 CDS Rpal_2613 NC_011004.1 2825400 2825726 R KEGG: rle:RL3151 hypothetical protein; hypothetical protein complement(2825400..2825726) Rhodopseudomonas palustris TIE-1 6410275 YP_001991602.1 CDS Rpal_2614 NC_011004.1 2826038 2827255 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gsu:GSU2697 multidrug resistance protein; RND family efflux transporter MFP subunit 2826038..2827255 Rhodopseudomonas palustris TIE-1 6410276 YP_001991603.1 CDS Rpal_2616 NC_011004.1 2830651 2832156 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: xau:Xaut_2451 RND efflux system, outer membrane lipoprotein, NodT family; NodT family RND efflux system outer membrane lipoprotein 2830651..2832156 Rhodopseudomonas palustris TIE-1 6410278 YP_001991604.1 CDS Rpal_2617 NC_011004.1 2832329 2833936 D KEGG: bbt:BBta_7373 membrane protein of unknown function; hypothetical protein 2832329..2833936 Rhodopseudomonas palustris TIE-1 6410279 YP_001991605.1 CDS Rpal_2619 NC_011004.1 2834779 2835081 R KEGG: nwi:Nwi_2293 hypothetical protein; hypothetical protein complement(2834779..2835081) Rhodopseudomonas palustris TIE-1 6410281 YP_001991606.1 CDS Rpal_2620 NC_011004.1 2835196 2837508 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nwi:Nwi_2294 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(2835196..2837508) Rhodopseudomonas palustris TIE-1 6410282 YP_001991607.1 CDS Rpal_2621 NC_011004.1 2837659 2838156 R PFAM: GCN5-related N-acetyltransferase; KEGG: nwi:Nwi_2295 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2837659..2838156) Rhodopseudomonas palustris TIE-1 6410283 YP_001991608.1 CDS Rpal_2622 NC_011004.1 2838170 2840401 R PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: nwi:Nwi_2296 TonB-dependent receptor; TonB-dependent receptor plug complement(2838170..2840401) Rhodopseudomonas palustris TIE-1 6410284 YP_001991609.1 CDS Rpal_2623 NC_011004.1 2840500 2841489 R PFAM: FecR protein; KEGG: nwi:Nwi_2297 FecR protein; anti-FecI sigma factor FecR complement(2840500..2841489) Rhodopseudomonas palustris TIE-1 6410285 YP_001991610.1 CDS Rpal_2624 NC_011004.1 2841611 2842369 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rsh:Rsph17029_3961 ABC transporter; ABC transporter complement(2841611..2842369) Rhodopseudomonas palustris TIE-1 6410286 YP_001991611.1 CDS Rpal_2625 NC_011004.1 2842366 2843316 R PFAM: transport system permease protein; KEGG: atc:AGR_C_4491 ferrichrome ABC transporter (permease) homolog; transport system permease complement(2842366..2843316) Rhodopseudomonas palustris TIE-1 6410287 YP_001991612.1 CDS Rpal_2626 NC_011004.1 2843309 2844286 R PFAM: transport system permease protein; KEGG: rsp:RSP_3220 ABC ferric siderophore transporter inner membrane subunit; transport system permease complement(2843309..2844286) Rhodopseudomonas palustris TIE-1 6410288 YP_001991613.1 CDS Rpal_2627 NC_011004.1 2844283 2845188 R PFAM: periplasmic binding protein; KEGG: rsp:RSP_3079 ABC Fe+3 siderophore transporter periplasmic substrate-binding protein; periplasmic binding protein complement(2844283..2845188) Rhodopseudomonas palustris TIE-1 6410289 YP_001991614.1 CDS Rpal_2628 NC_011004.1 2845198 2846067 R PFAM: xylose isomerase; KEGG: nwi:Nwi_2298 xylose isomerase-like TIM barrel; xylose isomerase complement(2845198..2846067) Rhodopseudomonas palustris TIE-1 6410290 YP_001991615.1 CDS Rpal_2629 NC_011004.1 2846067 2847377 R KEGG: nwi:Nwi_2299 hypothetical protein; hypothetical protein complement(2846067..2847377) Rhodopseudomonas palustris TIE-1 6410291 YP_001991616.1 CDS Rpal_2630 NC_011004.1 2847374 2848639 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(2847374..2848639) Rhodopseudomonas palustris TIE-1 6410292 YP_001991617.1 CDS Rpal_2631 NC_011004.1 2848636 2850369 R PFAM: IucA/IucC family protein; KEGG: nwi:Nwi_2301 siderophore synthetase component; IucA/IucC family protein complement(2848636..2850369) Rhodopseudomonas palustris TIE-1 6410293 YP_001991618.1 CDS Rpal_2632 NC_011004.1 2850353 2852134 R PFAM: IucA/IucC family protein; KEGG: nwi:Nwi_2302 siderophore synthetase component; IucA/IucC family protein complement(2850353..2852134) Rhodopseudomonas palustris TIE-1 6410294 YP_001991619.1 CDS Rpal_2633 NC_011004.1 2852399 2852920 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: nwi:Nwi_2303 Fec I like protein; ECF subfamily RNA polymerase sigma-24 subunit 2852399..2852920 Rhodopseudomonas palustris TIE-1 6410295 YP_001991620.1 CDS Rpal_2634 NC_011004.1 2853107 2854798 R PFAM: ABC transporter; SbmABacA family protein; ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_1667 ABC transporter (fused ATP-binding and permease components); ABC transporter complement(2853107..2854798) Rhodopseudomonas palustris TIE-1 6410296 YP_001991621.1 CDS Rpal_2635 NC_011004.1 2854795 2855559 R PFAM: ferric iron reductase; KEGG: xau:Xaut_2784 ferric iron reductase; ferric iron reductase complement(2854795..2855559) Rhodopseudomonas palustris TIE-1 6410297 YP_001991622.1 CDS Rpal_2636 NC_011004.1 2855583 2857913 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bpe:BP1138 ferric siderophore receptor; TonB-dependent siderophore receptor complement(2855583..2857913) Rhodopseudomonas palustris TIE-1 6410298 YP_001991623.1 CDS Rpal_2637 NC_011004.1 2858517 2859137 R KEGG: gtn:GTNG_1127 dipicolinate synthase, A chain; hypothetical protein complement(2858517..2859137) Rhodopseudomonas palustris TIE-1 6410299 YP_001991624.1 CDS Rpal_2638 NC_011004.1 2859390 2860511 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta complement(2859390..2860511) Rhodopseudomonas palustris TIE-1 6410300 YP_001991625.1 CDS Rpal_2639 NC_011004.1 2860532 2863456 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(2860532..2863456) Rhodopseudomonas palustris TIE-1 6410301 YP_001991626.1 CDS Rpal_2640 NC_011004.1 2863776 2864477 R TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: radical SAM domain protein; KEGG: pde:Pden_2987 anaerobic ribonucleoside-triphosphate reductase activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein complement(2863776..2864477) Rhodopseudomonas palustris TIE-1 6410302 YP_001991627.1 CDS Rpal_2641 NC_011004.1 2864434 2864625 R KEGG: pde:Pden_2988 hypothetical protein; hypothetical protein complement(2864434..2864625) Rhodopseudomonas palustris TIE-1 6410303 YP_001991628.1 CDS Rpal_2642 NC_011004.1 2864643 2866664 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(2864643..2866664) Rhodopseudomonas palustris TIE-1 6410304 YP_001991629.1 CDS Rpal_2643 NC_011004.1 2866999 2867535 R KEGG: smd:Smed_4449 hypothetical protein; hypothetical protein complement(2866999..2867535) Rhodopseudomonas palustris TIE-1 6410305 YP_001991630.1 CDS Rpal_2644 NC_011004.1 2867587 2869011 R PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: swi:Swit_4792 protein of unknown function DUF955; XRE family transcriptional regulator complement(2867587..2869011) Rhodopseudomonas palustris TIE-1 6410306 YP_001991631.1 CDS Rpal_2645 NC_011004.1 2869155 2869580 D PFAM: thioesterase superfamily protein; KEGG: pde:Pden_1349 thioesterase superfamily protein; thioesterase superfamily protein 2869155..2869580 Rhodopseudomonas palustris TIE-1 6410307 YP_001991632.1 CDS Rpal_2646 NC_011004.1 2869577 2871109 D PFAM: MmgE/PrpD family protein; KEGG: pde:Pden_1348 2-methylcitrate dehydratase; 2-methylcitrate dehydratase 2869577..2871109 Rhodopseudomonas palustris TIE-1 6410308 YP_001991633.1 CDS Rpal_2647 NC_011004.1 2871145 2872329 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 2871145..2872329 Rhodopseudomonas palustris TIE-1 6410309 YP_001991634.1 CDS Rpal_2648 NC_011004.1 2872340 2873257 D TIGRFAM: methylisocitrate lyase; KEGG: vei:Veis_0650 methylisocitrate lyase; methylisocitrate lyase 2872340..2873257 Rhodopseudomonas palustris TIE-1 6410310 YP_001991635.1 CDS Rpal_2649 NC_011004.1 2873290 2873886 D PFAM: protein of unknown function DUF208; KEGG: nwi:Nwi_2889 protein of unknown function DUF208; hypothetical protein 2873290..2873886 Rhodopseudomonas palustris TIE-1 6410311 YP_001991636.1 CDS Rpal_2650 NC_011004.1 2874236 2876602 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2874236..2876602 Rhodopseudomonas palustris TIE-1 6410312 YP_001991637.1 CDS Rpal_2651 NC_011004.1 2877460 2879862 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_2201 TonB-dependent receptor; TonB-dependent receptor 2877460..2879862 Rhodopseudomonas palustris TIE-1 6410313 YP_001991638.1 CDS cobN NC_011004.1 2879871 2883773 D with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 2879871..2883773 Rhodopseudomonas palustris TIE-1 6410314 YP_001991639.1 CDS Rpal_2653 NC_011004.1 2883770 2884246 D KEGG: pau:PA14_39630 hypothetical protein; hypothetical protein 2883770..2884246 Rhodopseudomonas palustris TIE-1 6410315 YP_001991640.1 CDS Rpal_2654 NC_011004.1 2884246 2884581 D KEGG: pau:PA14_39620 hypothetical protein; hypothetical protein 2884246..2884581 Rhodopseudomonas palustris TIE-1 6410316 YP_001991641.1 CDS Rpal_2656 NC_011004.1 2886979 2887983 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bja:blr7666 transcriptional regulatory protein; AraC family transcriptional regulator 2886979..2887983 Rhodopseudomonas palustris TIE-1 6410319 YP_001991642.1 CDS Rpal_2657 NC_011004.1 2888056 2888928 D PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: mag:amb1575 NAD(+)-dinitrogen-reductase ADP-D-ribosyltransferase; NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase 2888056..2888928 Rhodopseudomonas palustris TIE-1 6410320 YP_001991643.1 CDS Rpal_2658 NC_011004.1 2888940 2889830 D KEGG: mag:amb1576 ADP-ribosyl-[dinitrogen reductase] glycohydrolase; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; PFAM: ADP-ribosylation/Crystallin J1; ADP-ribosyl-(dinitrogen reductase) hydrolase 2888940..2889830 Rhodopseudomonas palustris TIE-1 6410321 YP_001991644.1 CDS Rpal_2659 NC_011004.1 2889959 2890078 R hypothetical protein complement(2889959..2890078) Rhodopseudomonas palustris TIE-1 6410322 YP_001991645.1 CDS Rpal_2660 NC_011004.1 2890326 2890661 R KEGG: bja:blr5534 hypothetical protein; hypothetical protein complement(2890326..2890661) Rhodopseudomonas palustris TIE-1 6410323 YP_001991646.1 CDS Rpal_2661 NC_011004.1 2891057 2892214 D KEGG: bra:BRADO4860 aliphatic amidase expression-regulating protein, AmiC; aliphatic amidase expression-regulating protein, AmiC 2891057..2892214 Rhodopseudomonas palustris TIE-1 6410324 YP_001991647.1 CDS Rpal_2662 NC_011004.1 2892211 2892876 D PFAM: ANTAR domain protein; KEGG: bra:BRADO4859 conserved hypothetical protein; ANTAR domain (AmiR antitermination protein); response regulator receiver and ANTAR domain-containing protein 2892211..2892876 Rhodopseudomonas palustris TIE-1 6410325 YP_001991648.1 CDS Rpal_2663 NC_011004.1 2892888 2894126 D KEGG: azc:AZC_3889 UreA/short-chain amide transport system substrate-binding protein precursor; UreA/short-chain amide transport system substrate-binding protein 2892888..2894126 Rhodopseudomonas palustris TIE-1 6410326 YP_001991649.1 CDS Rpal_2664 NC_011004.1 2894245 2895117 D PFAM: inner-membrane translocator; KEGG: bra:BRADO4857 branched-chain amino acid ABC transporter (permease protein); inner-membrane translocator 2894245..2895117 Rhodopseudomonas palustris TIE-1 6410327 YP_001991650.1 CDS Rpal_2665 NC_011004.1 2895129 2896193 D PFAM: inner-membrane translocator; KEGG: bra:BRADO4856 branched-chain amino acid ABC transporter (permease protein); inner-membrane translocator 2895129..2896193 Rhodopseudomonas palustris TIE-1 6410328 YP_001991651.1 CDS Rpal_2666 NC_011004.1 2896193 2896915 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_3205 branched-chain amino acid ABC transporter (ATP-binding protein); ABC transporter 2896193..2896915 Rhodopseudomonas palustris TIE-1 6410329 YP_001991652.1 CDS Rpal_2667 NC_011004.1 2896908 2897621 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO4854 branched-chain amino acid ABC transporter (ATP-binding protein); ABC transporter 2896908..2897621 Rhodopseudomonas palustris TIE-1 6410330 YP_001991653.1 CDS Rpal_2668 NC_011004.1 2897647 2898636 D PFAM: Acetamidase/formamidase; KEGG: bbt:BBta_3207 acetamidase/formamidase family protein; Acetamidase/formamidase 2897647..2898636 Rhodopseudomonas palustris TIE-1 6410331 YP_001991654.1 CDS Rpal_2669 NC_011004.1 2898652 2900391 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bbt:BBta_3208 nitrilase/cyanide hydratase family protein (carbon-nitrogen hydrolase); nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2898652..2900391 Rhodopseudomonas palustris TIE-1 6410332 YP_001991655.1 CDS Rpal_2670 NC_011004.1 2900407 2901168 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mrd:Mrad2831_3316 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2900407..2901168 Rhodopseudomonas palustris TIE-1 6410333 YP_001991656.1 CDS Rpal_2671 NC_011004.1 2901472 2902416 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: wsu:WS1803 molybdenum transport ATP-binding protein; ABC transporter complement(2901472..2902416) Rhodopseudomonas palustris TIE-1 6410334 YP_001991657.1 CDS Rpal_2672 NC_011004.1 2902521 2903246 D TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; KEGG: azo:azo3846 molybdate transport system substrate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 2902521..2903246 Rhodopseudomonas palustris TIE-1 6410335 YP_001991658.1 CDS Rpal_2673 NC_011004.1 2903250 2903945 D TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: azo:azo3845 molybdenum ABC transporter permease protein; molybdate ABC transporter inner membrane subunit 2903250..2903945 Rhodopseudomonas palustris TIE-1 6410336 YP_001991659.1 CDS Rpal_2674 NC_011004.1 2903966 2904187 R KEGG: bbt:BBta_6055 hypothetical protein; hypothetical protein complement(2903966..2904187) Rhodopseudomonas palustris TIE-1 6410337 YP_001991660.1 CDS Rpal_2675 NC_011004.1 2904310 2905344 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: smd:Smed_2599 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2904310..2905344) Rhodopseudomonas palustris TIE-1 6410338 YP_001991661.1 CDS Rpal_2676 NC_011004.1 2905450 2905998 D PFAM: isochorismatase hydrolase; KEGG: isochorismatase hydrolase; isochorismatase hydrolase 2905450..2905998 Rhodopseudomonas palustris TIE-1 6410339 YP_001991662.1 CDS Rpal_2677 NC_011004.1 2906272 2907225 D KEGG: xau:Xaut_4179 hypothetical protein; hypothetical protein 2906272..2907225 Rhodopseudomonas palustris TIE-1 6410340 YP_001991663.1 CDS Rpal_2678 NC_011004.1 2907129 2907362 R hypothetical protein complement(2907129..2907362) Rhodopseudomonas palustris TIE-1 6410341 YP_001991664.1 CDS Rpal_2679 NC_011004.1 2907414 2908079 R PFAM: Protein of unknown function DUF1847; KEGG: cth:Cthe_2788 hypothetical protein; hypothetical protein complement(2907414..2908079) Rhodopseudomonas palustris TIE-1 6410342 YP_001991665.1 CDS Rpal_2680 NC_011004.1 2908175 2908831 R PFAM: ABC transporter inner membrane protein; KEGG: pfl:PFL_0240 D-methionine ABC transporter permease protein; ABC transporter inner membrane protein complement(2908175..2908831) Rhodopseudomonas palustris TIE-1 6410343 YP_001991666.1 CDS Rpal_2681 NC_011004.1 2908812 2909930 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pap:PSPA7_2912 probable ATP-binding component of ABC transporter; ABC transporter complement(2908812..2909930) Rhodopseudomonas palustris TIE-1 6410344 YP_001991667.1 CDS Rpal_2682 NC_011004.1 2909930 2910745 R PFAM: NLPA lipoprotein; KEGG: pmy:Pmen_2364 NlpA lipoprotein; NLPA lipoprotein complement(2909930..2910745) Rhodopseudomonas palustris TIE-1 6410345 YP_001991668.1 CDS Rpal_2683 NC_011004.1 2911316 2912926 D PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: ccr:CC_0945 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 2911316..2912926 Rhodopseudomonas palustris TIE-1 6410346 YP_001991669.1 CDS Rpal_2684 NC_011004.1 2912923 2914305 D KEGG: dol:Dole_0559 phenylacetate--CoA ligase; phenylacetate--CoA ligase 2912923..2914305 Rhodopseudomonas palustris TIE-1 6410347 YP_001991670.1 CDS Rpal_2685 NC_011004.1 2914327 2915064 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_B1895 enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase 2914327..2915064 Rhodopseudomonas palustris TIE-1 6410348 YP_001991671.1 CDS Rpal_2686 NC_011004.1 2915401 2916489 D KEGG: bja:bll6455 ABC transporter substrate-binding protein; ABC transporter substrate-binding protein 2915401..2916489 Rhodopseudomonas palustris TIE-1 6410349 YP_001991672.1 CDS Rpal_2687 NC_011004.1 2916467 2917495 D PFAM: ABC transporter inner membrane protein; KEGG: bja:bll6454 ABC transporter permease protein; ABC transporter inner membrane protein 2916467..2917495 Rhodopseudomonas palustris TIE-1 6410350 YP_001991673.1 CDS Rpal_2688 NC_011004.1 2917489 2918283 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll6453 ABC transporter ATP-binding protein; ABC transporter 2917489..2918283 Rhodopseudomonas palustris TIE-1 6410351 YP_001991674.1 CDS Rpal_2689 NC_011004.1 2918441 2920081 R PFAM: phosphate transporter; KEGG: bra:BRADO6359 low-affinity inorganic phosphate transport protein (PiT family); phosphate transporter complement(2918441..2920081) Rhodopseudomonas palustris TIE-1 6410352 YP_001991675.1 CDS Rpal_2690 NC_011004.1 2920251 2920778 D PFAM: regulatory protein MarR; KEGG: oan:Oant_0083 transcriptional regulator, MarR family; MarR family transcriptional regulator 2920251..2920778 Rhodopseudomonas palustris TIE-1 6410353 YP_001991676.1 CDS Rpal_2691 NC_011004.1 2920765 2921502 D KEGG: gbe:GbCGDNIH1_1303 hypothetical protein; hypothetical protein 2920765..2921502 Rhodopseudomonas palustris TIE-1 6410354 YP_001991677.1 CDS Rpal_2692 NC_011004.1 2921522 2921896 D KEGG: oan:Oant_0082 hypothetical protein; hypothetical protein 2921522..2921896 Rhodopseudomonas palustris TIE-1 6410355 YP_001991678.1 CDS Rpal_2694 NC_011004.1 2922611 2924341 R KEGG: rso:RS03125 probable transmembrane protein; hypothetical protein complement(2922611..2924341) Rhodopseudomonas palustris TIE-1 6410357 YP_001991679.1 CDS Rpal_2695 NC_011004.1 2924402 2924887 R KEGG: bja:blr6106 hypothetical protein; hypothetical protein complement(2924402..2924887) Rhodopseudomonas palustris TIE-1 6410358 YP_001991680.1 CDS Rpal_2696 NC_011004.1 2926196 2927650 D PFAM: porin; KEGG: pol:Bpro_5280 hypothetical protein; porin 2926196..2927650 Rhodopseudomonas palustris TIE-1 6410360 YP_001991681.1 CDS Rpal_2697 NC_011004.1 2927951 2930188 R PFAM: lytic transglycosylase; KEGG: bbt:BBta_4695 soluble lytic transglycosylase (SLT); lytic transglycosylase complement(2927951..2930188) Rhodopseudomonas palustris TIE-1 6410361 YP_001991682.1 CDS Rpal_2698 NC_011004.1 2930429 2931058 R KEGG: bbt:BBta_4232 exported protein of unknown function; hypothetical protein complement(2930429..2931058) Rhodopseudomonas palustris TIE-1 6410362 YP_001991683.1 CDS Rpal_2699 NC_011004.1 2931305 2931715 D Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis; NADH dehydrogenase 2931305..2931715 Rhodopseudomonas palustris TIE-1 6410363 YP_001991684.1 CDS Rpal_2700 NC_011004.1 2931756 2932445 R PFAM: ThiJ/PfpI domain protein; KEGG: bja:bll4280 probable ThiJ/PfpI family protein; ThiJ/PfpI domain-containing protein complement(2931756..2932445) Rhodopseudomonas palustris TIE-1 6410364 YP_001991685.1 CDS Rpal_2701 NC_011004.1 2932569 2933507 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bbt:BBta_4229 transcriptional regulator AraC/XylS family; AraC family transcriptional regulator 2932569..2933507 Rhodopseudomonas palustris TIE-1 6410365 YP_001991686.1 CDS Rpal_2702 NC_011004.1 2933526 2934953 R KEGG: bja:bll4656 hypothetical protein; beta-agarase complement(2933526..2934953) Rhodopseudomonas palustris TIE-1 6410366 YP_001991687.1 CDS Rpal_2703 NC_011004.1 2934967 2935917 R PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: bbt:BBta_4223 lipase/esterase; alpha/beta hydrolase complement(2934967..2935917) Rhodopseudomonas palustris TIE-1 6410367 YP_001991688.1 CDS Rpal_2704 NC_011004.1 2936150 2937139 D KEGG: nha:Nham_1811 hypothetical protein; hypothetical protein 2936150..2937139 Rhodopseudomonas palustris TIE-1 6410368 YP_001991689.1 CDS Rpal_2705 NC_011004.1 2937340 2938584 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: azc:AZC_0903 serine protease; peptidase S1 and S6 chymotrypsin/Hap complement(2937340..2938584) Rhodopseudomonas palustris TIE-1 6410369 YP_001991690.1 CDS Rpal_2706 NC_011004.1 2938648 2938968 R hypothetical protein complement(2938648..2938968) Rhodopseudomonas palustris TIE-1 6410370 YP_001991691.1 CDS aat NC_011004.1 2939092 2939769 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(2939092..2939769) Rhodopseudomonas palustris TIE-1 6410371 YP_001991692.1 CDS Rpal_2708 NC_011004.1 2939829 2941046 R KEGG: nha:Nham_3404 hypothetical protein; hypothetical protein complement(2939829..2941046) Rhodopseudomonas palustris TIE-1 6410372 YP_001991693.1 CDS Rpal_2709 NC_011004.1 2941289 2941960 R KEGG: rle:pRL110433 hypothetical protein; hypothetical protein complement(2941289..2941960) Rhodopseudomonas palustris TIE-1 6410373 YP_001991694.1 CDS Rpal_2710 NC_011004.1 2942093 2943184 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: nha:Nham_2192 signal transduction histidine kinase; signal transduction histidine kinase complement(2942093..2943184) Rhodopseudomonas palustris TIE-1 6410374 YP_001991695.1 CDS Rpal_2711 NC_011004.1 2943181 2943624 R PFAM: response regulator receiver; KEGG: bbt:BBta_4218 two-component response regulator/receiver (CheY-like protein); response regulator receiver protein complement(2943181..2943624) Rhodopseudomonas palustris TIE-1 6410375 YP_001991696.1 CDS Rpal_2712 NC_011004.1 2943621 2945153 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: bbt:BBta_4217 two-component sensor histidine kinase; multi-sensor signal transduction histidine kinase complement(2943621..2945153) Rhodopseudomonas palustris TIE-1 6410376 YP_001991697.1 CDS Rpal_2713 NC_011004.1 2945342 2946694 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(2945342..2946694) Rhodopseudomonas palustris TIE-1 6410377 YP_001991698.1 CDS Rpal_2714 NC_011004.1 2946812 2947306 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: bbt:BBta_4215 acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(2946812..2947306) Rhodopseudomonas palustris TIE-1 6410378 YP_001991699.1 CDS Rpal_2715 NC_011004.1 2947345 2947800 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(2947345..2947800) Rhodopseudomonas palustris TIE-1 6410379 YP_001991700.1 CDS Rpal_2716 NC_011004.1 2948092 2948763 R PFAM: protein of unknown function DUF1236; KEGG: nha:Nham_4145 hypothetical protein; hypothetical protein complement(2948092..2948763) Rhodopseudomonas palustris TIE-1 6410380 YP_001991701.1 CDS Rpal_2717 NC_011004.1 2949030 2949242 D KEGG: bbt:BBta_3130 hypothetical protein; hypothetical protein 2949030..2949242 Rhodopseudomonas palustris TIE-1 6410381 YP_001991702.1 CDS Rpal_2718 NC_011004.1 2949580 2950533 D PFAM: cation efflux protein; KEGG: ppw:PputW619_3985 cation efflux protein; cation efflux protein 2949580..2950533 Rhodopseudomonas palustris TIE-1 6410382 YP_001991703.1 CDS Rpal_2719 NC_011004.1 2950530 2951213 D PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: bam:Bamb_0559 transcriptional regulator, TetR family; TetR family transcriptional regulator 2950530..2951213 Rhodopseudomonas palustris TIE-1 6410383 YP_001991704.1 CDS Rpal_2720 NC_011004.1 2951298 2952065 R PFAM: DSBA oxidoreductase; KEGG: nwi:Nwi_1750 DsbA oxidoreductase; DSBA oxidoreductase complement(2951298..2952065) Rhodopseudomonas palustris TIE-1 6410384 YP_001991705.1 CDS Rpal_2721 NC_011004.1 2952256 2952885 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: maq:Maqu_0381 peroxidase; peroxidase complement(2952256..2952885) Rhodopseudomonas palustris TIE-1 6410385 YP_001991706.1 CDS Rpal_2722 NC_011004.1 2953097 2953486 R KEGG: nha:Nham_0685 hypothetical protein; hypothetical protein complement(2953097..2953486) Rhodopseudomonas palustris TIE-1 6410386 YP_001991707.1 CDS Rpal_2723 NC_011004.1 2953673 2955100 R PFAM: peptidase M48 Ste24p; KEGG: bja:bll4295 hypothetical protein; peptidase M48 Ste24p complement(2953673..2955100) Rhodopseudomonas palustris TIE-1 6410387 YP_001991708.1 CDS Rpal_2724 NC_011004.1 2955208 2956398 D PFAM: aminotransferase class I and II; KEGG: nha:Nham_2183 aminotransferase, class I and II; class I and II aminotransferase 2955208..2956398 Rhodopseudomonas palustris TIE-1 6410388 YP_001991709.1 CDS Rpal_2725 NC_011004.1 2956527 2957114 D PFAM: BioY protein; KEGG: bja:blr4297 hypothetical protein; BioY protein 2956527..2957114 Rhodopseudomonas palustris TIE-1 6410389 YP_001991710.1 CDS Rpal_2726 NC_011004.1 2957213 2958550 D PFAM: sodium:dicarboxylate symporter; KEGG: bra:BRADO3510 C4-dicarboxylate transport protein; sodium:dicarboxylate symporter 2957213..2958550 Rhodopseudomonas palustris TIE-1 6410390 YP_001991711.1 CDS Rpal_2727 NC_011004.1 2958655 2959674 R KEGG: rrs:RoseRS_0838 hypothetical protein; hypothetical protein complement(2958655..2959674) Rhodopseudomonas palustris TIE-1 6410391 YP_001991712.1 CDS Rpal_2728 NC_011004.1 2959788 2962949 R TIGRFAM: ribonuclease, Rne/Rng family; KEGG: bra:BRADO3511 ribonuclease E; Rne/Rng family ribonuclease complement(2959788..2962949) Rhodopseudomonas palustris TIE-1 6410392 YP_001991713.1 CDS Rpal_2729 NC_011004.1 2963650 2964960 D PFAM: cell wall hydrolase/autolysin; KEGG: bja:blr4306 N-acetylmuramoyl-L-alanine amidase precursor; N-acetylmuramoyl-L-alanine amidase 2963650..2964960 Rhodopseudomonas palustris TIE-1 6410393 YP_001991714.1 CDS Rpal_2730 NC_011004.1 2965180 2967678 D KEGG: nha:Nham_1824 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 2965180..2967678 Rhodopseudomonas palustris TIE-1 6410394 YP_001991715.1 CDS Rpal_2731 NC_011004.1 2967797 2968928 D KEGG: bpm:BURPS1710b_3602 hypothetical protein; hypothetical protein join(2967797..2967865,2967867..2968928) Rhodopseudomonas palustris TIE-1 6410395 YP_001991716.1 CDS Rpal_2732 NC_011004.1 2968935 2969828 D PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bra:BRADO3517 dehydrogenase, NAD(P)-binding domain; 6-phosphogluconate dehydrogenase 2968935..2969828 Rhodopseudomonas palustris TIE-1 6410396 YP_001991717.1 CDS Rpal_2733 NC_011004.1 2969955 2971325 R PFAM: peptidase M23; KEGG: bja:bll4323 hypothetical protein; peptidase M23 complement(2969955..2971325) Rhodopseudomonas palustris TIE-1 6410397 YP_001991718.1 CDS Rpal_2734 NC_011004.1 2971421 2972137 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bbt:BBta_3956 hypothetical protein; alkyl hydroperoxide reductase complement(2971421..2972137) Rhodopseudomonas palustris TIE-1 6410398 YP_001991719.1 CDS Rpal_2735 NC_011004.1 2972332 2976054 D KEGG: nha:Nham_2333 hypothetical protein; hypothetical protein 2972332..2976054 Rhodopseudomonas palustris TIE-1 6410399 YP_001991720.1 CDS Rpal_2736 NC_011004.1 2976202 2976762 R PFAM: cytochrome B561; KEGG: reh:H16_A3123 cytochrome b561; cytochrome B561 complement(2976202..2976762) Rhodopseudomonas palustris TIE-1 6410400 YP_001991721.1 CDS Rpal_2737 NC_011004.1 2976983 2978200 R PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_3959 membrane protein of unknown function; major facilitator superfamily protein complement(2976983..2978200) Rhodopseudomonas palustris TIE-1 6410401 YP_001991722.1 CDS Rpal_2738 NC_011004.1 2978285 2979541 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(2978285..2979541) Rhodopseudomonas palustris TIE-1 6410402 YP_001991723.1 CDS anmK NC_011004.1 2979699 2980802 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 2979699..2980802 Rhodopseudomonas palustris TIE-1 6410403 YP_001991724.1 CDS Rpal_2740 NC_011004.1 2980856 2981503 R KEGG: nwi:Nwi_1666 hypothetical protein; hypothetical protein complement(2980856..2981503) Rhodopseudomonas palustris TIE-1 6410404 YP_001991725.1 CDS Rpal_2741 NC_011004.1 2981740 2982912 D PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bbt:BBta_3965 cysteine desulfurase (nitrogenase metalloclusters biosynthesis protein NifS); class V aminotransferase 2981740..2982912 Rhodopseudomonas palustris TIE-1 6410405 YP_001991726.1 CDS Rpal_2742 NC_011004.1 2982995 2984476 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 2982995..2984476 Rhodopseudomonas palustris TIE-1 6410406 YP_001991727.1 CDS Rpal_2743 NC_011004.1 2984609 2985367 D KEGG: bra:BRADO3542 SufC, related to ABC transporter associated with Fe-S cluster assembly (ATP-binding protein); TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; SMART: ATPase AAA; FeS assembly ATPase SufC 2984609..2985367 Rhodopseudomonas palustris TIE-1 6410407 YP_001991728.1 CDS Rpal_2744 NC_011004.1 2985391 2986704 D TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: bra:BRADO3543 SufD, needed for FhuF Fe-S center production/stability; FeS assembly protein SufD 2985391..2986704 Rhodopseudomonas palustris TIE-1 6410408 YP_001991729.1 CDS Rpal_2745 NC_011004.1 2986701 2987948 D TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bbt:BBta_3969 cysteine desulfurase; SufS subfamily cysteine desulfurase 2986701..2987948 Rhodopseudomonas palustris TIE-1 6410409 YP_001991730.1 CDS Rpal_2746 NC_011004.1 2987945 2988313 D TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; KEGG: bja:blr4343 hypothetical protein; FeS assembly SUF system protein 2987945..2988313 Rhodopseudomonas palustris TIE-1 6410410 YP_001991731.1 CDS Rpal_2747 NC_011004.1 2988321 2988737 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: csa:Csal_3007 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2988321..2988737 Rhodopseudomonas palustris TIE-1 6410411 YP_001991732.1 CDS Rpal_2748 NC_011004.1 2988867 2989238 D TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: nwi:Nwi_1659 HesB/YadR/YfhF; iron-sulfur cluster assembly accessory protein 2988867..2989238 Rhodopseudomonas palustris TIE-1 6410412 YP_001991733.1 CDS Rpal_2749 NC_011004.1 2989392 2991356 D KEGG: hch:HCH_03141 hypothetical protein; hypothetical protein 2989392..2991356 Rhodopseudomonas palustris TIE-1 6410413 YP_001991734.1 CDS Rpal_2750 NC_011004.1 2991362 2992462 D KEGG: mgm:Mmc1_0291 FAD dependent oxidoreductase; dehydrogenase (flavoprotein)-like protein 2991362..2992462 Rhodopseudomonas palustris TIE-1 6410414 YP_001991735.1 CDS Rpal_2751 NC_011004.1 2992459 2992932 D PFAM: Endoribonuclease L-PSP; KEGG: hha:Hhal_0968 endoribonuclease L-PSP; endoribonuclease L-PSP 2992459..2992932 Rhodopseudomonas palustris TIE-1 6410415 YP_001991736.1 CDS Rpal_2752 NC_011004.1 2993018 2994688 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT0296 TPR repeat; hypothetical protein 2993018..2994688 Rhodopseudomonas palustris TIE-1 6410416 YP_001991737.1 CDS Rpal_2753 NC_011004.1 2994803 2995309 D PFAM: TfoX domain protein; KEGG: bra:BRADO3547 conserved hypothetical protein; TfoX N-terminal domain; TfoX domain-containing protein 2994803..2995309 Rhodopseudomonas palustris TIE-1 6410417 YP_001991738.1 CDS Rpal_2754 NC_011004.1 2995318 2996385 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bja:bll4347 hypothetical protein; diguanylate cyclase complement(2995318..2996385) Rhodopseudomonas palustris TIE-1 6410418 YP_001991739.1 CDS Rpal_2755 NC_011004.1 2996484 2997902 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bja:bll4348 ATP-dependent RNA helicase; DEAD/DEAH box helicase complement(2996484..2997902) Rhodopseudomonas palustris TIE-1 6410419 YP_001991740.1 CDS Rpal_2756 NC_011004.1 2998176 2999198 R PFAM: helix-turn-helix- domain containing protein AraC type; regulatory protein LacI; KEGG: bja:blr7666 transcriptional regulatory protein; AraC family transcriptional regulator complement(2998176..2999198) Rhodopseudomonas palustris TIE-1 6410420 YP_001991741.1 CDS Rpal_2757 NC_011004.1 2999524 3001209 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bra:BRADO2559 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2999524..3001209 Rhodopseudomonas palustris TIE-1 6410421 YP_001991742.1 CDS Rpal_2758 NC_011004.1 3001387 3002892 D PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: nwi:Nwi_1656 peptidase C14, caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 3001387..3002892 Rhodopseudomonas palustris TIE-1 6410422 YP_001991743.1 CDS Rpal_2759 NC_011004.1 3002947 3003783 R SMART: helix-turn-helix domain protein; KEGG: gbe:GbCGDNIH1_1784 DNA-binding protein; XRE family transcriptional regulator complement(3002947..3003783) Rhodopseudomonas palustris TIE-1 6410423 YP_001991744.1 CDS Rpal_2760 NC_011004.1 3003882 3004787 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: cak:Caul_3998 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3003882..3004787 Rhodopseudomonas palustris TIE-1 6410424 YP_001991745.1 CDS Rpal_2761 NC_011004.1 3004821 3005009 R KEGG: nha:Nham_2319 hypothetical protein; hypothetical protein complement(3004821..3005009) Rhodopseudomonas palustris TIE-1 6410425 YP_001991746.1 CDS Rpal_2762 NC_011004.1 3005229 3005699 R KEGG: bra:BRADO3937 conserved hypothetical protein; signal peptide; hypothetical protein complement(3005229..3005699) Rhodopseudomonas palustris TIE-1 6410426 YP_001991747.1 CDS Rpal_2763 NC_011004.1 3005841 3006128 D PFAM: plasmid maintenance system killer; KEGG: pla:Plav_0020 plasmid maintenance system killer; plasmid maintenance system killer protein 3005841..3006128 Rhodopseudomonas palustris TIE-1 6410427 YP_001991748.1 CDS Rpal_2764 NC_011004.1 3006142 3006429 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: cbd:COXBU7E912_0533 addiction module antidote protein, HigA family; XRE family transcriptional regulator 3006142..3006429 Rhodopseudomonas palustris TIE-1 6410428 YP_001991749.1 CDS Rpal_2765 NC_011004.1 3006442 3008493 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(3006442..3008493) Rhodopseudomonas palustris TIE-1 6410429 YP_001991750.1 CDS Rpal_2766 NC_011004.1 3008951 3009481 D PFAM: SNARE associated Golgi protein; KEGG: bja:blr4356 hypothetical protein; hypothetical protein 3008951..3009481 Rhodopseudomonas palustris TIE-1 6410430 YP_001991751.1 CDS Rpal_2767 NC_011004.1 3009567 3010556 D PFAM: beta-lactamase domain protein; KEGG: bra:BRADO4092 conserved hypothetical protein; metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 3009567..3010556 Rhodopseudomonas palustris TIE-1 6410431 YP_001991752.1 CDS Rpal_2768 NC_011004.1 3010702 3011247 R KEGG: rsp:RSP_0326 hypothetical protein; hypothetical protein complement(3010702..3011247) Rhodopseudomonas palustris TIE-1 6410432 YP_001991753.1 CDS Rpal_2769 NC_011004.1 3011698 3012363 D PFAM: Negative transcriptional regulator; KEGG: bbt:BBta_3982 hypothetical protein; FMN-binding negative transcriptional regulator 3011698..3012363 Rhodopseudomonas palustris TIE-1 6410433 YP_001991754.1 CDS Rpal_2770 NC_011004.1 3012378 3013373 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 3012378..3013373 Rhodopseudomonas palustris TIE-1 6410434 YP_001991755.1 CDS Rpal_2771 NC_011004.1 3013443 3014042 D PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: atc:AGR_C_4253 hypothetical protein; type 12 methyltransferase 3013443..3014042 Rhodopseudomonas palustris TIE-1 6410435 YP_001991756.1 CDS Rpal_2772 NC_011004.1 3014297 3016093 D PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rle:RL2064 methyltransferase; radical SAM domain-containing protein 3014297..3016093 Rhodopseudomonas palustris TIE-1 6410436 YP_001991757.1 CDS Rpal_2773 NC_011004.1 3016340 3016702 D KEGG: nha:Nham_2503 hypothetical protein; hypothetical protein 3016340..3016702 Rhodopseudomonas palustris TIE-1 6410437 YP_001991758.1 CDS Rpal_2774 NC_011004.1 3016707 3017105 R PFAM: Endoribonuclease L-PSP; KEGG: azc:AZC_0227 translation initiation inhibitor; endoribonuclease L-PSP complement(3016707..3017105) Rhodopseudomonas palustris TIE-1 6410438 YP_001991759.1 CDS Rpal_2775 NC_011004.1 3017455 3018153 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bcs:BCAN_A2006 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(3017455..3018153) Rhodopseudomonas palustris TIE-1 6410439 YP_001991760.1 CDS Rpal_2776 NC_011004.1 3018464 3019252 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pnu:Pnuc_1182 ABC transporter; ABC transporter 3018464..3019252 Rhodopseudomonas palustris TIE-1 6410440 YP_001991761.1 CDS Rpal_2777 NC_011004.1 3019252 3020130 D PFAM: ABC transporter inner membrane protein; KEGG: pnu:Pnuc_1181 ABC transporter inner membrane protein; ABC transporter inner membrane protein 3019252..3020130 Rhodopseudomonas palustris TIE-1 6410441 YP_001991762.1 CDS Rpal_2778 NC_011004.1 3020196 3021173 D PFAM: NMT1/THI5 like domain protein; KEGG: pnu:Pnuc_1180 ABC transporter periplasmic protein; NMT1/THI5 like domain-containing protein 3020196..3021173 Rhodopseudomonas palustris TIE-1 6410442 YP_001991763.1 CDS Rpal_2779 NC_011004.1 3021244 3022521 D PFAM: Amidase; KEGG: bra:BRADO0324 amidase (AmiD); amidase 3021244..3022521 Rhodopseudomonas palustris TIE-1 6410443 YP_001991764.1 CDS Rpal_2780 NC_011004.1 3022563 3024368 R TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; poly-beta-hydroxybutyrate polymerase domain protein; KEGG: bra:BRADO3568 poly-beta-hydroxybutyrate polymerase; poly(R)-hydroxyalkanoic acid synthase complement(3022563..3024368) Rhodopseudomonas palustris TIE-1 6410444 YP_001991765.1 CDS Rpal_2781 NC_011004.1 3024695 3025000 D KEGG: nha:Nham_2311 hypothetical protein; hypothetical protein 3024695..3025000 Rhodopseudomonas palustris TIE-1 6410445 YP_001991766.1 CDS Rpal_2782 NC_011004.1 3025185 3026405 D PFAM: aminotransferase class I and II; KEGG: bja:blr4361 aminotransferase; aminotransferase 3025185..3026405 Rhodopseudomonas palustris TIE-1 6410446 YP_001991767.1 CDS Rpal_2783 NC_011004.1 3026484 3027809 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 3026484..3027809 Rhodopseudomonas palustris TIE-1 6410447 YP_001991768.1 CDS glpX NC_011004.1 3027872 3028876 D type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 3027872..3028876 Rhodopseudomonas palustris TIE-1 6410448 YP_001991769.1 CDS Rpal_2785 NC_011004.1 3028984 3029427 D PFAM: GCN5-related N-acetyltransferase; KEGG: mrd:Mrad2831_1141 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3028984..3029427 Rhodopseudomonas palustris TIE-1 6410449 YP_001991770.1 CDS Rpal_2786 NC_011004.1 3029493 3030218 D TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bbt:BBta_3998 (S)-2-haloacid dehalogenase; haloacid dehalogenase 3029493..3030218 Rhodopseudomonas palustris TIE-1 6410450 YP_001991771.1 CDS Rpal_2787 NC_011004.1 3030382 3032223 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: bbt:BBta_4000 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 3030382..3032223 Rhodopseudomonas palustris TIE-1 6410451 YP_001991772.1 CDS Rpal_2788 NC_011004.1 3032387 3032677 R hypothetical protein complement(3032387..3032677) Rhodopseudomonas palustris TIE-1 6410452 YP_001991773.1 CDS Rpal_2789 NC_011004.1 3032762 3033880 R KEGG: dar:Daro_1033 hypothetical protein; hypothetical protein complement(3032762..3033880) Rhodopseudomonas palustris TIE-1 6410453 YP_001991774.1 CDS Rpal_2790 NC_011004.1 3033898 3035127 R TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: bbt:BBta_4006 membrane-bound lytic transglycosylase precursor protein, signal peptide; lytic murein transglycosylase complement(3033898..3035127) Rhodopseudomonas palustris TIE-1 6410454 YP_001991775.1 CDS Rpal_2791 NC_011004.1 3035350 3036330 D similar to YegS from E. coli; lipid kinase 3035350..3036330 Rhodopseudomonas palustris TIE-1 6410455 YP_001991776.1 CDS Rpal_2792 NC_011004.1 3036409 3036975 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(3036409..3036975) Rhodopseudomonas palustris TIE-1 6410456 YP_001991777.1 CDS Rpal_2793 NC_011004.1 3037113 3038168 D PFAM: tRNA synthetase class II (D K and N); KEGG: bbt:BBta_4013 lysyl-tRNA synthetase (lysine--tRNA ligase); tRNA synthetase class II (D K and N) 3037113..3038168 Rhodopseudomonas palustris TIE-1 6410457 YP_001991778.1 CDS Rpal_2794 NC_011004.1 3038165 3039256 D KEGG: nwi:Nwi_1641 protein of unknown function DUF160; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM domain protein; lysine 2,3-aminomutase YodO family protein 3038165..3039256 Rhodopseudomonas palustris TIE-1 6410458 YP_001991779.1 CDS Rpal_2795 NC_011004.1 3039417 3039677 D KEGG: nha:Nham_2299 hypothetical protein; hypothetical protein 3039417..3039677 Rhodopseudomonas palustris TIE-1 6410459 YP_001991780.1 CDS Rpal_2796 NC_011004.1 3039704 3040294 R KEGG: bra:BRADO3591 hypothetical protein; hypothetical protein complement(3039704..3040294) Rhodopseudomonas palustris TIE-1 6410460 YP_001991781.1 CDS Rpal_2797 NC_011004.1 3040801 3041028 D hypothetical protein 3040801..3041028 Rhodopseudomonas palustris TIE-1 6410461 YP_001991782.1 CDS Rpal_2798 NC_011004.1 3042603 3042860 D PFAM: type IV pilus assembly PilZ; KEGG: bra:BRADO3661 hypothetical protein; type IV pilus assembly PilZ 3042603..3042860 Rhodopseudomonas palustris TIE-1 6410463 YP_001991783.1 CDS Rpal_2799 NC_011004.1 3043174 3043623 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nha:Nham_2145 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3043174..3043623) Rhodopseudomonas palustris TIE-1 6410464 YP_001991784.1 CDS Rpal_2800 NC_011004.1 3044116 3044877 D PFAM: Silent information regulator protein Sir2; KEGG: bja:blr4409 hypothetical protein; silent information regulator protein Sir2 3044116..3044877 Rhodopseudomonas palustris TIE-1 6410465 YP_001991785.1 CDS Rpal_2801 NC_011004.1 3045081 3045788 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bra:BRADO3673 cold shock protein, DNA binding, CspA-like; cold-shock DNA-binding domain-containing protein 3045081..3045788 Rhodopseudomonas palustris TIE-1 6410466 YP_001991786.1 CDS Rpal_2802 NC_011004.1 3045986 3046456 D PFAM: protein of unknown function DUF192; KEGG: bja:blr4411 hypothetical protein; hypothetical protein 3045986..3046456 Rhodopseudomonas palustris TIE-1 6410467 YP_001991787.1 CDS Rpal_2803 NC_011004.1 3046841 3047146 D PFAM: transcriptional regulator PadR family protein; KEGG: fre:Franean1_5040 transcriptional regulator, PadR-like family; PadR family transcriptional regulator 3046841..3047146 Rhodopseudomonas palustris TIE-1 6410469 YP_001991788.1 CDS Rpal_2804 NC_011004.1 3047134 3047676 D hypothetical protein 3047134..3047676 Rhodopseudomonas palustris TIE-1 6410470 YP_001991789.1 CDS Rpal_2805 NC_011004.1 3048236 3049354 D PFAM: glycosyl transferase group 1; KEGG: pau:PA14_66230 lipopolysaccharide core biosynthesis protein WaaG; group 1 glycosyl transferase 3048236..3049354 Rhodopseudomonas palustris TIE-1 6410471 YP_001991790.1 CDS Rpal_2806 NC_011004.1 3049288 3050562 R KEGG: bja:bll4413 hypothetical protein; hypothetical protein complement(3049288..3050562) Rhodopseudomonas palustris TIE-1 6410472 YP_001991791.1 CDS Rpal_2807 NC_011004.1 3050805 3051110 D PFAM: ETC complex I subunit conserved region; KEGG: bra:BRADO3676 ETC complex I subunit conserved region protein (fragment); ETC complex I subunit 3050805..3051110 Rhodopseudomonas palustris TIE-1 6410473 YP_001991792.1 CDS Rpal_2808 NC_011004.1 3051310 3052914 D PFAM: carboxyl transferase; KEGG: nha:Nham_2125 propionyl-CoA carboxylase; propionyl-CoA carboxylase 3051310..3052914 Rhodopseudomonas palustris TIE-1 6410474 YP_001991793.1 CDS Rpal_2809 NC_011004.1 3052931 3054943 D PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: bja:blr4421 3-methylcrotonyl-CoA carboxylase alpha subunit; carbamoyl-phosphate synthase L chain ATP-binding 3052931..3054943 Rhodopseudomonas palustris TIE-1 6410475 YP_001991794.1 CDS Rpal_2810 NC_011004.1 3055064 3055969 D PFAM: pyruvate carboxyltransferase; KEGG: bja:blr4422 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase 3055064..3055969 Rhodopseudomonas palustris TIE-1 6410476 YP_001991795.1 CDS Rpal_2811 NC_011004.1 3056066 3057424 R TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:bll4428 hypothetical protein; TRAP dicarboxylate transporter subunit DctM complement(3056066..3057424) Rhodopseudomonas palustris TIE-1 6410477 YP_001991796.1 CDS Rpal_2812 NC_011004.1 3057421 3057972 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bja:bll4429 hypothetical protein; tripartite AtP-independent periplasmic transporter subunit DctQ complement(3057421..3057972) Rhodopseudomonas palustris TIE-1 6410478 YP_001991797.1 CDS Rpal_2813 NC_011004.1 3057969 3058988 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:bll4430 hypothetical protein; TRAP dicarboxylate transporter subunit DctP complement(3057969..3058988) Rhodopseudomonas palustris TIE-1 6410479 YP_001991798.1 CDS Rpal_2814 NC_011004.1 3059259 3059498 D TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: mms:mma_3539 hypothetical protein; pentapeptide MXKDX repeat-containing protein 3059259..3059498 Rhodopseudomonas palustris TIE-1 6410480 YP_001991799.1 CDS Rpal_2815 NC_011004.1 3060023 3063016 D TIGRFAM: outer membrane insertion C-terminal signal; PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: bja:bll1944 hypothetical protein; outer membrane insertion C-terminal signal 3060023..3063016 Rhodopseudomonas palustris TIE-1 6410481 YP_001991800.1 CDS Rpal_2816 NC_011004.1 3063193 3063651 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: bja:blr2405 peptidylprolyl isomerase; FKBP-type peptidylprolyl isomerase 3063193..3063651 Rhodopseudomonas palustris TIE-1 6410482 YP_001991801.1 CDS Rpal_2817 NC_011004.1 3063700 3064041 R hypothetical protein complement(3063700..3064041) Rhodopseudomonas palustris TIE-1 6410483 YP_001991802.1 CDS Rpal_2818 NC_011004.1 3064262 3065068 D PFAM: protein of unknown function DUF1212; KEGG: rru:Rru_A2596 protein of unknown function DUF1212; hypothetical protein 3064262..3065068 Rhodopseudomonas palustris TIE-1 6410484 YP_001991803.1 CDS Rpal_2819 NC_011004.1 3065065 3065544 D KEGG: rru:Rru_A2595 hypothetical protein; hypothetical protein 3065065..3065544 Rhodopseudomonas palustris TIE-1 6410485 YP_001991804.1 CDS Rpal_2820 NC_011004.1 3065545 3065898 R hypothetical protein complement(3065545..3065898) Rhodopseudomonas palustris TIE-1 6410486 YP_001991805.1 CDS Rpal_2821 NC_011004.1 3066139 3066591 D KEGG: bja:blr5152 hypothetical protein; hypothetical protein 3066139..3066591 Rhodopseudomonas palustris TIE-1 6410487 YP_001991806.1 CDS Rpal_2822 NC_011004.1 3066862 3068145 D PFAM: FRG domain protein; KEGG: rle:RL1933 conserved hypothetical protein, possible fusion; FRG domain-containing protein 3066862..3068145 Rhodopseudomonas palustris TIE-1 6410488 YP_001991807.1 CDS Rpal_2823 NC_011004.1 3068568 3073781 D PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: nha:Nham_2078 alpha-2-macroglobulin-like; alpha-2-macroglobulin domain-containing protein 3068568..3073781 Rhodopseudomonas palustris TIE-1 6410490 YP_001991808.1 CDS Rpal_2824 NC_011004.1 3073931 3075973 D TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: nha:Nham_2077 penicillin-binding protein 1C; penicillin-binding protein 1C 3073931..3075973 Rhodopseudomonas palustris TIE-1 6410491 YP_001991809.1 CDS Rpal_2825 NC_011004.1 3076024 3077769 D PFAM: glycosyl transferase family 39; KEGG: bbt:BBta_3917 glycosyl transferase, family 39; glycosyl transferase family protein 3076024..3077769 Rhodopseudomonas palustris TIE-1 6410492 YP_001991810.1 CDS Rpal_2826 NC_011004.1 3077771 3078619 D PFAM: phosphoesterase PA-phosphatase related; KEGG: bja:blr4441 hypothetical protein; PA-phosphatase-like phosphoesterase 3077771..3078619 Rhodopseudomonas palustris TIE-1 6410493 YP_001991811.1 CDS Rpal_2827 NC_011004.1 3078683 3079435 D PFAM: glycosyl transferase family 2; KEGG: nha:Nham_2075 glycosyl transferase, family 2; family 2 glycosyl transferase 3078683..3079435 Rhodopseudomonas palustris TIE-1 6410494 YP_001991812.1 CDS Rpal_2828 NC_011004.1 3079435 3079773 D PFAM: lipid A biosynthesis domain protein; KEGG: bbt:BBta_3920 membrane protein of unknown function with lipid A disaccharide synthase (N-term); lipid A biosynthesis domain-containing protein 3079435..3079773 Rhodopseudomonas palustris TIE-1 6410495 YP_001991813.1 CDS Rpal_2830 NC_011004.1 3081136 3082335 D hypothetical protein 3081136..3082335 Rhodopseudomonas palustris TIE-1 6410497 YP_001991814.1 CDS Rpal_2831 NC_011004.1 3082416 3083612 R TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: bra:BRADO3914 cystathionine beta-lyase, PLP-dependent (beta-cystathionase); cystathionine beta-lyase complement(3082416..3083612) Rhodopseudomonas palustris TIE-1 6410498 YP_001991815.1 CDS Rpal_2832 NC_011004.1 3083934 3084995 D PFAM: extracellular solute-binding protein family 3; KEGG: nha:Nham_2071 extracellular solute-binding protein, family 3; family 3 extracellular solute-binding protein 3083934..3084995 Rhodopseudomonas palustris TIE-1 6410499 YP_001991816.1 CDS Rpal_2833 NC_011004.1 3085016 3086221 D TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: nha:Nham_2070 amino acid ABC transporter permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 3085016..3086221 Rhodopseudomonas palustris TIE-1 6410500 YP_001991817.1 CDS Rpal_2834 NC_011004.1 3086218 3087723 D TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: nha:Nham_2069 amino acid ABC transporter permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 3086218..3087723 Rhodopseudomonas palustris TIE-1 6410501 YP_001991818.1 CDS Rpal_2835 NC_011004.1 3087739 3088479 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_3926 amino acid transport protein, ATP-binding protein; ABC transporter 3087739..3088479 Rhodopseudomonas palustris TIE-1 6410502 YP_001991819.1 CDS Rpal_2836 NC_011004.1 3088504 3088773 R hypothetical protein complement(3088504..3088773) Rhodopseudomonas palustris TIE-1 6410503 YP_001991820.1 CDS Rpal_2837 NC_011004.1 3088919 3089956 R CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A complement(3088919..3089956) Rhodopseudomonas palustris TIE-1 6410504 YP_001991821.1 CDS Rpal_2838 NC_011004.1 3090066 3091295 R PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: bbt:BBta_3928 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(3090066..3091295) Rhodopseudomonas palustris TIE-1 6410505 YP_001991822.1 CDS Rpal_2839 NC_011004.1 3091355 3092200 R PFAM: protein of unknown function DUF1365; KEGG: bra:BRADO3907 hypothetical protein; hypothetical protein complement(3091355..3092200) Rhodopseudomonas palustris TIE-1 6410506 YP_001991823.1 CDS Rpal_2840 NC_011004.1 3092203 3093516 R PFAM: amine oxidase; KEGG: bbt:BBta_3930 hypothetical protein; amine oxidase complement(3092203..3093516) Rhodopseudomonas palustris TIE-1 6410507 YP_001991824.1 CDS Rpal_2841 NC_011004.1 3093951 3095399 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: nha:Nham_2066 RND efflux system, outer membrane lipoprotein, NodT; NodT family RND efflux system outer membrane lipoprotein 3093951..3095399 Rhodopseudomonas palustris TIE-1 6410508 YP_001991825.1 CDS Rpal_2842 NC_011004.1 3095389 3096756 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO3904 multidrug resistance protein MdtA precursor (multidrug transporter MdtA); RND family efflux transporter MFP subunit 3095389..3096756 Rhodopseudomonas palustris TIE-1 6410509 YP_001991826.1 CDS Rpal_2843 NC_011004.1 3096827 3099958 D PFAM: acriflavin resistance protein; KEGG: bja:blr4457 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 3096827..3099958 Rhodopseudomonas palustris TIE-1 6410510 YP_001991827.1 CDS Rpal_2844 NC_011004.1 3099958 3103065 D PFAM: acriflavin resistance protein; KEGG: bra:BRADO3902 multidrug resistance protein MdtC (multidrug transporter MdtC); acriflavin resistance protein 3099958..3103065 Rhodopseudomonas palustris TIE-1 6410511 YP_001991828.1 CDS Rpal_2845 NC_011004.1 3103073 3103804 D PFAM: DTW domain containing protein; KEGG: nha:Nham_2062 hypothetical protein; DTW domain containing protein 3103073..3103804 Rhodopseudomonas palustris TIE-1 6410512 YP_001991829.1 CDS Rpal_2846 NC_011004.1 3104217 3105686 D PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: bca:BCE_0975 alginate O-acetyltransferase; membrane bound O-acyl transferase MBOAT family protein 3104217..3105686 Rhodopseudomonas palustris TIE-1 6410514 YP_001991830.1 CDS Rpal_2847 NC_011004.1 3105689 3106822 D KEGG: sfu:Sfum_1130 alginate O-acetyltransferase AlgJ; alginate O-acetyltransferase AlgJ 3105689..3106822 Rhodopseudomonas palustris TIE-1 6410515 YP_001991831.1 CDS Rpal_2848 NC_011004.1 3106843 3107019 R KEGG: bbt:BBta_3938 hypothetical protein; hypothetical protein complement(3106843..3107019) Rhodopseudomonas palustris TIE-1 6410516 YP_001991832.1 CDS Rpal_2849 NC_011004.1 3107215 3107619 R KEGG: bra:BRADO3004 conserved hypothetical protein; signal peptide; hypothetical protein complement(3107215..3107619) Rhodopseudomonas palustris TIE-1 6410517 YP_001991833.1 CDS Rpal_2850 NC_011004.1 3108137 3108802 D PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: nha:Nham_1787 protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 3108137..3108802 Rhodopseudomonas palustris TIE-1 6410519 YP_001991834.1 CDS Rpal_2851 NC_011004.1 3109013 3110404 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: nha:Nham_1826 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 3109013..3110404 Rhodopseudomonas palustris TIE-1 6410520 YP_001991835.1 CDS Rpal_2852 NC_011004.1 3110697 3111473 D KEGG: bja:blr4474 hypothetical protein; hypothetical protein 3110697..3111473 Rhodopseudomonas palustris TIE-1 6410521 YP_001991836.1 CDS valS NC_011004.1 3111615 3114488 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3111615..3114488 Rhodopseudomonas palustris TIE-1 6410522 YP_001991837.1 CDS Rpal_2854 NC_011004.1 3114492 3114878 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bpt:Bpet3619 probable lactoylglutathione lyase; glyoxalase/bleomycin resistance protein/dioxygenase 3114492..3114878 Rhodopseudomonas palustris TIE-1 6410523 YP_001991838.1 CDS Rpal_2855 NC_011004.1 3115074 3115640 D KEGG: gur:Gura_0796 hypothetical protein; hypothetical protein 3115074..3115640 Rhodopseudomonas palustris TIE-1 6410524 YP_001991839.1 CDS Rpal_2856 NC_011004.1 3115865 3116485 R responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase complement(3115865..3116485) Rhodopseudomonas palustris TIE-1 6410525 YP_001991840.1 CDS Rpal_2857 NC_011004.1 3116635 3117594 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3116635..3117594 Rhodopseudomonas palustris TIE-1 6410526 YP_001991841.1 CDS Rpal_2858 NC_011004.1 3117621 3118094 D PFAM: cyclase/dehydrase; KEGG: nha:Nham_1832 cyclase/dehydrase; cyclase/dehydrase 3117621..3118094 Rhodopseudomonas palustris TIE-1 6410527 YP_001991842.1 CDS Rpal_2859 NC_011004.1 3118394 3119014 R PFAM: CinA domain protein; KEGG: nha:Nham_1833 CinA-like; CinA domain-containing protein complement(3118394..3119014) Rhodopseudomonas palustris TIE-1 6410528 YP_001991843.1 CDS Rpal_2860 NC_011004.1 3119017 3120213 R TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MECDP-synthase; KEGG: nha:Nham_1834 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(3119017..3120213) Rhodopseudomonas palustris TIE-1 6410529 YP_001991844.1 CDS Rpal_2861 NC_011004.1 3120487 3121488 D TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: bja:blr4486 nitrogen regulation protein; nifR3 family TIM-barrel protein 3120487..3121488 Rhodopseudomonas palustris TIE-1 6410530 YP_001991845.1 CDS Rpal_2862 NC_011004.1 3121485 3122657 D KEGG: bra:BRADO3867 nitrogen regulation protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 3121485..3122657 Rhodopseudomonas palustris TIE-1 6410531 YP_001991846.1 CDS Rpal_2863 NC_011004.1 3122667 3124109 D KEGG: bbt:BBta_4070 nitrogen assimilation regulatory protein; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; SMART: ATPase AAA; Fis family transcriptional regulator 3122667..3124109 Rhodopseudomonas palustris TIE-1 6410532 YP_001991847.1 CDS Rpal_2864 NC_011004.1 3124269 3126560 D KEGG: nha:Nham_1838 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 3124269..3126560 Rhodopseudomonas palustris TIE-1 6410533 YP_001991848.1 CDS Rpal_2865 NC_011004.1 3126577 3127944 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: bbt:BBta_4072 nitrogen assimilation regulatory protein; Fis family transcriptional regulator 3126577..3127944 Rhodopseudomonas palustris TIE-1 6410534 YP_001991849.1 CDS Rpal_2866 NC_011004.1 3127985 3128842 D catalyzes the transamination of D-amino acids and their alpha-keto acids; D-amino acid aminotransferase 3127985..3128842 Rhodopseudomonas palustris TIE-1 6410535 YP_001991850.1 CDS hfq NC_011004.1 3129024 3129272 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 3129024..3129272 Rhodopseudomonas palustris TIE-1 6410536 YP_001991851.1 CDS Rpal_2868 NC_011004.1 3129284 3130651 D TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: nha:Nham_1842 GTP-binding protein, HSR1-related; GTP-binding proten HflX 3129284..3130651 Rhodopseudomonas palustris TIE-1 6410537 YP_001991852.1 CDS Rpal_2869 NC_011004.1 3130854 3133595 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 3130854..3133595 Rhodopseudomonas palustris TIE-1 6410538 YP_001991853.1 CDS Rpal_2870 NC_011004.1 3133784 3134041 R KEGG: nha:Nham_1765 hypothetical protein; hypothetical protein complement(3133784..3134041) Rhodopseudomonas palustris TIE-1 6410539 YP_001991854.1 CDS coaD NC_011004.1 3134380 3134889 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3134380..3134889 Rhodopseudomonas palustris TIE-1 6410540 YP_001991855.1 CDS Rpal_2872 NC_011004.1 3134906 3135469 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: bbt:BBta_4368 peptidyl-prolyl cis-trans isomerase A (rotamase A); cyclophilin type peptidyl-prolyl cis-trans isomerase 3134906..3135469 Rhodopseudomonas palustris TIE-1 6410541 YP_001991856.1 CDS Rpal_2873 NC_011004.1 3135479 3135922 D KEGG: nha:Nham_1768 hypothetical protein; hypothetical protein 3135479..3135922 Rhodopseudomonas palustris TIE-1 6410542 YP_001991857.1 CDS Rpal_2874 NC_011004.1 3135898 3136365 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: bra:BRADO3995 peptidyl prolyl cis-trans isomerase (rotamase B); cyclophilin type peptidyl-prolyl cis-trans isomerase 3135898..3136365 Rhodopseudomonas palustris TIE-1 6410543 YP_001991858.1 CDS queA NC_011004.1 3136535 3137617 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 3136535..3137617 Rhodopseudomonas palustris TIE-1 6410544 YP_001991859.1 CDS tgt NC_011004.1 3137614 3138747 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 3137614..3138747 Rhodopseudomonas palustris TIE-1 6410545 YP_001991860.1 CDS Rpal_2877 NC_011004.1 3139825 3140448 R PFAM: helix-turn-helix domain protein; cupin; KEGG: nwi:Nwi_0662 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(3139825..3140448) Rhodopseudomonas palustris TIE-1 6410546 YP_001991861.1 CDS Rpal_2878 NC_011004.1 3140445 3140771 R hypothetical protein complement(3140445..3140771) Rhodopseudomonas palustris TIE-1 6410547 YP_001991862.1 CDS Rpal_2879 NC_011004.1 3141012 3141965 R KEGG: bra:BRADO5913 ABC transporter substrate-binding protein; aliphatic sulfonates transporter; TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; aliphatic sulfonates ABC transporter periplsmic protein complement(3141012..3141965) Rhodopseudomonas palustris TIE-1 6410548 YP_001991863.1 CDS Rpal_2880 NC_011004.1 3142127 3142696 R PFAM: flavin reductase domain protein FMN-binding; KEGG: bja:bll7007 oxidoreductase; flavin reductase domain-containing protein complement(3142127..3142696) Rhodopseudomonas palustris TIE-1 6410549 YP_001991864.1 CDS Rpal_2881 NC_011004.1 3142707 3143549 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll7008 aliphatic sulfonate ABC transporter ATP-binding protein; ABC transporter complement(3142707..3143549) Rhodopseudomonas palustris TIE-1 6410550 YP_001991865.1 CDS Rpal_2882 NC_011004.1 3143557 3144363 R PFAM: ABC transporter inner membrane protein; KEGG: bja:bll7009 aliphatic sulfonate ABC transporter permease protein; ABC transporter inner membrane protein complement(3143557..3144363) Rhodopseudomonas palustris TIE-1 6410551 YP_001991866.1 CDS Rpal_2883 NC_011004.1 3144360 3145535 R catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase complement(3144360..3145535) Rhodopseudomonas palustris TIE-1 6410552 YP_001991867.1 CDS Rpal_2884 NC_011004.1 3145580 3146527 R TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: bja:bll7011 ABC transporter aliphatic-sulfonate-binding protein; aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein complement(3145580..3146527) Rhodopseudomonas palustris TIE-1 6410553 YP_001991868.1 CDS Rpal_2885 NC_011004.1 3146974 3148191 D PFAM: radical SAM domain protein; KEGG: rsq:Rsph17025_0775 radical SAM domain protein; radical SAM domain-containing protein 3146974..3148191 Rhodopseudomonas palustris TIE-1 6410554 YP_001991869.1 CDS Rpal_2886 NC_011004.1 3148233 3149105 D PFAM: NifH/frxC-family protein; KEGG: rsq:Rsph17025_0774 nitrogenase; nitrogenase 3148233..3149105 Rhodopseudomonas palustris TIE-1 6410555 YP_001991870.1 CDS Rpal_2887 NC_011004.1 3149107 3150465 D PFAM: oxidoreductase/nitrogenase component 1; KEGG: rsq:Rsph17025_0773 oxidoreductase/nitrogenase, component 1; oxidoreductase/nitrogenase component 1 3149107..3150465 Rhodopseudomonas palustris TIE-1 6410556 YP_001991871.1 CDS Rpal_2888 NC_011004.1 3150465 3151712 D PFAM: oxidoreductase/nitrogenase component 1; KEGG: rsq:Rsph17025_0772 nitrogenase; oxidoreductase/nitrogenase component 1 3150465..3151712 Rhodopseudomonas palustris TIE-1 6410557 YP_001991872.1 CDS Rpal_2889 NC_011004.1 3151874 3152860 R SMART: extracellular solute-binding protein family 3; KEGG: bcm:Bcenmc03_6201 ABC nitrate/sulfonate/bicarbonate transporter periplasmic ligand binding protein; family 3 extracellular solute-binding protein complement(3151874..3152860) Rhodopseudomonas palustris TIE-1 6410558 YP_001991873.1 CDS Rpal_2890 NC_011004.1 3153193 3154797 D PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: bbt:BBta_2190 choline dehydrogenase, a flavoprotein; glucose-methanol-choline oxidoreductase 3153193..3154797 Rhodopseudomonas palustris TIE-1 6410559 YP_001991874.1 CDS Rpal_2891 NC_011004.1 3154887 3155213 R KEGG: rle:pRL80020 hypothetical protein; hypothetical protein complement(3154887..3155213) Rhodopseudomonas palustris TIE-1 6410560 YP_001991875.1 CDS Rpal_2892 NC_011004.1 3155245 3155754 R PFAM: OsmC family protein; KEGG: bja:blr0920 hypothetical protein; OsmC family protein complement(3155245..3155754) Rhodopseudomonas palustris TIE-1 6410561 YP_001991876.1 CDS Rpal_2893 NC_011004.1 3155783 3156562 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_7645 sulfonate ABC transporter ATP binding protein; ABC transporter complement(3155783..3156562) Rhodopseudomonas palustris TIE-1 6410562 YP_001991877.1 CDS Rpal_2894 NC_011004.1 3156562 3157404 R PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_7646 sulfonate ABC transporter permease protein; ABC transporter inner membrane protein complement(3156562..3157404) Rhodopseudomonas palustris TIE-1 6410563 YP_001991878.1 CDS Rpal_2895 NC_011004.1 3157528 3158502 R KEGG: bra:BRADO0531 sulfonate ABC transporter periplasmic binding protein (SsuA/YcbO-like); TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein complement(3157528..3158502) Rhodopseudomonas palustris TIE-1 6410564 YP_001991879.1 CDS Rpal_2896 NC_011004.1 3159052 3160260 R PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rru:Rru_A0098 cystathionine gamma-synthase; cystathionine gamma-synthase complement(3159052..3160260) Rhodopseudomonas palustris TIE-1 6410565 YP_001991880.1 CDS Rpal_2897 NC_011004.1 3160500 3161534 R PFAM: alpha/beta hydrolase fold; KEGG: bbt:BBta_2581 hydrolase; alpha/beta hydrolase fold protein complement(3160500..3161534) Rhodopseudomonas palustris TIE-1 6410566 YP_001991881.1 CDS Rpal_2898 NC_011004.1 3161953 3163614 D PFAM: carboxylesterase type B; KEGG: cak:Caul_0584 carboxylesterase type B; carboxylesterase type B 3161953..3163614 Rhodopseudomonas palustris TIE-1 6410567 YP_001991882.1 CDS Rpal_2899 NC_011004.1 3163646 3164668 D PFAM: extracellular solute-binding protein family 3; KEGG: rru:Rru_A0779 extracellular solute-binding protein, family 3; family 3 extracellular solute-binding protein 3163646..3164668 Rhodopseudomonas palustris TIE-1 6410568 YP_001991883.1 CDS Rpal_2900 NC_011004.1 3164687 3165856 D PFAM: ABC transporter inner membrane protein; KEGG: rru:Rru_A0780 ABC transporter inner membrane protein; ABC transporter inner membrane protein 3164687..3165856 Rhodopseudomonas palustris TIE-1 6410569 YP_001991884.1 CDS Rpal_2901 NC_011004.1 3165853 3166941 D TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: rru:Rru_A0781 amino acid ABC transporter permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 3165853..3166941 Rhodopseudomonas palustris TIE-1 6410570 YP_001991885.1 CDS Rpal_2902 NC_011004.1 3167488 3168516 D KEGG: bxe:Bxe_C0117 ABC nitrate/sulfonate/bicarbonate family transporter periplasmic ligand binding protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein 3167488..3168516 Rhodopseudomonas palustris TIE-1 6410571 YP_001991886.1 CDS Rpal_2903 NC_011004.1 3168527 3169525 D PFAM: ABC transporter inner membrane protein; KEGG: bam:Bamb_3677 ABC transporter inner membrane protein; ABC transporter inner membrane protein 3168527..3169525 Rhodopseudomonas palustris TIE-1 6410572 YP_001991887.1 CDS Rpal_2904 NC_011004.1 3169525 3170337 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mex:Mext_1167 ABC transporter; ABC transporter 3169525..3170337 Rhodopseudomonas palustris TIE-1 6410573 YP_001991888.1 CDS Rpal_2905 NC_011004.1 3170384 3170626 D hypothetical protein 3170384..3170626 Rhodopseudomonas palustris TIE-1 6410574 YP_001991889.1 CDS Rpal_2906 NC_011004.1 3171186 3172076 D PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rru:Rru_A0796 radical SAM; radical SAM domain-containing protein 3171186..3172076 Rhodopseudomonas palustris TIE-1 6410575 YP_001991890.1 CDS Rpal_2907 NC_011004.1 3172115 3172984 D KEGG: rru:Rru_A0795 nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein; nitrogenase iron protein 3172115..3172984 Rhodopseudomonas palustris TIE-1 6410576 YP_001991891.1 CDS Rpal_2908 NC_011004.1 3173050 3174558 D PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0794 nitrogenase; nitrogenase 3173050..3174558 Rhodopseudomonas palustris TIE-1 6410577 YP_001991892.1 CDS Rpal_2909 NC_011004.1 3174570 3175952 D PFAM: oxidoreductase/nitrogenase component 1; KEGG: rru:Rru_A0793 nitrogenase; nitrogenase 3174570..3175952 Rhodopseudomonas palustris TIE-1 6410578 YP_001991893.1 CDS Rpal_2910 NC_011004.1 3176247 3177551 D PFAM: FAD dependent oxidoreductase; KEGG: bbt:BBta_4331 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3176247..3177551 Rhodopseudomonas palustris TIE-1 6410579 YP_001991894.1 CDS Rpal_2911 NC_011004.1 3177599 3178084 R KEGG: bte:BTH_II1547 L-2-amino-thiazoline-4-carboxylic acid hydrolase; L-2-amino-thiazoline-4-carboxylic acid hydrolase complement(3177599..3178084) Rhodopseudomonas palustris TIE-1 6410580 YP_001991895.1 CDS Rpal_2912 NC_011004.1 3178081 3178803 R PFAM: isochorismatase hydrolase; KEGG: cya:CYA_1918 isochorismatase family protein; isochorismatase hydrolase complement(3178081..3178803) Rhodopseudomonas palustris TIE-1 6410581 YP_001991896.1 CDS Rpal_2913 NC_011004.1 3178800 3180401 R PFAM: extracellular solute-binding protein family 5; KEGG: rru:Rru_A2014 twin-arginine translocation pathway signal; family 5 extracellular solute-binding protein complement(3178800..3180401) Rhodopseudomonas palustris TIE-1 6410582 YP_001991897.1 CDS Rpal_2914 NC_011004.1 3180627 3181517 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spe:Spro_2548 transcriptional regulator, LysR family; LysR family transcriptional regulator 3180627..3181517 Rhodopseudomonas palustris TIE-1 6410583 YP_001991898.1 CDS Rpal_2915 NC_011004.1 3181578 3183200 R PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO3960 ABC transporter ATP-binding protein; ABC transporter complement(3181578..3183200) Rhodopseudomonas palustris TIE-1 6410584 YP_001991899.1 CDS Rpal_2916 NC_011004.1 3183197 3184027 R PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_4329 ABC transporter permease protein; ABC transporter inner membrane protein complement(3183197..3184027) Rhodopseudomonas palustris TIE-1 6410585 YP_001991900.1 CDS Rpal_2917 NC_011004.1 3184031 3185008 R PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO3958 ABC transporter permease protein; ABC transporter inner membrane protein complement(3184031..3185008) Rhodopseudomonas palustris TIE-1 6410586 YP_001991901.1 CDS Rpal_2918 NC_011004.1 3185033 3186649 R PFAM: extracellular solute-binding protein family 5; KEGG: bra:BRADO3957 ABC transporter extracellular substrate binding protein; family 5 extracellular solute-binding protein complement(3185033..3186649) Rhodopseudomonas palustris TIE-1 6410587 YP_001991902.1 CDS Rpal_2919 NC_011004.1 3186819 3187985 R KEGG: xau:Xaut_4367 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(3186819..3187985) Rhodopseudomonas palustris TIE-1 6410588 YP_001991903.1 CDS Rpal_2920 NC_011004.1 3188015 3188797 R KEGG: dac:Daci_1059 hypothetical protein; hypothetical protein complement(3188015..3188797) Rhodopseudomonas palustris TIE-1 6410589 YP_001991904.1 CDS Rpal_2921 NC_011004.1 3189252 3189467 R KEGG: bbt:BBta_4362 hypothetical protein; hypothetical protein complement(3189252..3189467) Rhodopseudomonas palustris TIE-1 6410590 YP_001991905.1 CDS Rpal_2922 NC_011004.1 3189894 3190139 D KEGG: nha:Nham_1774 hypothetical protein; hypothetical protein 3189894..3190139 Rhodopseudomonas palustris TIE-1 6410591 YP_001991906.1 CDS Rpal_2923 NC_011004.1 3190136 3191026 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr4679 hypothetical protein; hypothetical protein complement(3190136..3191026) Rhodopseudomonas palustris TIE-1 6410592 YP_001991907.1 CDS Rpal_2924 NC_011004.1 3191216 3191617 D PFAM: Endoribonuclease L-PSP; KEGG: bja:bll4678 hypothetical protein; endoribonuclease L-PSP 3191216..3191617 Rhodopseudomonas palustris TIE-1 6410593 YP_001991908.1 CDS Rpal_2925 NC_011004.1 3191708 3191911 D KEGG: bbt:BBta_4350 hypothetical protein; hypothetical protein 3191708..3191911 Rhodopseudomonas palustris TIE-1 6410594 YP_001991909.1 CDS Rpal_2926 NC_011004.1 3192025 3192204 R PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1408 antenna complex, alpha/beta subunit; antenna complex alpha/beta subunit complement(3192025..3192204) Rhodopseudomonas palustris TIE-1 6410595 YP_001991910.1 CDS Rpal_2927 NC_011004.1 3192230 3192373 R PFAM: antenna complex alpha/beta subunit; KEGG: bbt:BBta_3081 light harvesting protein B-800-850; antenna complex alpha/beta subunit complement(3192230..3192373) Rhodopseudomonas palustris TIE-1 6410596 YP_001991911.1 CDS Rpal_2928 NC_011004.1 3192962 3195796 R PFAM: glycosyl transferase family 2; KEGG: nha:Nham_1779 glycosyl transferase, family 2; family 2 glycosyl transferase complement(3192962..3195796) Rhodopseudomonas palustris TIE-1 6410598 YP_001991912.1 CDS Rpal_2929 NC_011004.1 3195984 3196562 R KEGG: nha:Nham_1780 hypothetical protein; hypothetical protein complement(3195984..3196562) Rhodopseudomonas palustris TIE-1 6410599 YP_001991913.1 CDS Rpal_2930 NC_011004.1 3196849 3198459 D KEGG: bra:BRADO3757 beta (1-6) glucans synthase, NdvC-like; beta (1-6) glucans synthase, NdvC-like protein 3196849..3198459 Rhodopseudomonas palustris TIE-1 6410600 YP_001991914.1 CDS Rpal_2931 NC_011004.1 3198419 3198799 R KEGG: nha:Nham_1782 hypothetical protein; hypothetical protein complement(3198419..3198799) Rhodopseudomonas palustris TIE-1 6410601 YP_001991915.1 CDS Rpal_2932 NC_011004.1 3198873 3200264 R PFAM: Sporulation domain protein; KEGG: nha:Nham_1783 hypothetical protein; sporulation domain-containing protein complement(3198873..3200264) Rhodopseudomonas palustris TIE-1 6410602 YP_001991916.1 CDS glmU NC_011004.1 3200432 3201790 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 3200432..3201790 Rhodopseudomonas palustris TIE-1 6410603 YP_001991917.1 CDS Rpal_2934 NC_011004.1 3201917 3203743 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 3201917..3203743 Rhodopseudomonas palustris TIE-1 6410604 YP_001991918.1 CDS Rpal_2935 NC_011004.1 3204001 3204804 D PFAM: protein of unknown function DUF502; KEGG: nha:Nham_2056 protein of unknown function DUF502; hypothetical protein 3204001..3204804 Rhodopseudomonas palustris TIE-1 6410605 YP_001991919.1 CDS Rpal_2936 NC_011004.1 3204835 3206937 R PFAM: helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: nha:Nham_2055 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase complement(3204835..3206937) Rhodopseudomonas palustris TIE-1 6410606 YP_001991920.1 CDS Rpal_2937 NC_011004.1 3207092 3207382 D PFAM: protein of unknown function DUF339; KEGG: bja:bsl4602 hypothetical protein; hypothetical protein 3207092..3207382 Rhodopseudomonas palustris TIE-1 6410607 YP_001991921.1 CDS Rpal_2938 NC_011004.1 3207379 3210897 D KEGG: bra:BRADO3771 transcription repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 3207379..3210897 Rhodopseudomonas palustris TIE-1 6410608 YP_001991922.1 CDS Rpal_2939 NC_011004.1 3211041 3212273 R KEGG: nha:Nham_2052 hypothetical protein; diguanylate cyclase complement(3211041..3212273) Rhodopseudomonas palustris TIE-1 6410609 YP_001991923.1 CDS Rpal_2940 NC_011004.1 3212322 3213857 R KEGG: bra:BRADO3775 acid-CoA ligase; acid-CoA ligase complement(3212322..3213857) Rhodopseudomonas palustris TIE-1 6410610 YP_001991924.1 CDS Rpal_2941 NC_011004.1 3213862 3215742 R PFAM: extracellular solute-binding protein family 5; KEGG: nwi:Nwi_1510 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein complement(3213862..3215742) Rhodopseudomonas palustris TIE-1 6410611 YP_001991925.1 CDS Rpal_2942 NC_011004.1 3215961 3216707 D PFAM: Invasion associated locus B family protein; KEGG: bja:bll4589 hypothetical protein; invasion associated locus B family protein 3215961..3216707 Rhodopseudomonas palustris TIE-1 6410612 YP_001991926.1 CDS Rpal_2943 NC_011004.1 3216793 3217362 R hypothetical protein complement(3216793..3217362) Rhodopseudomonas palustris TIE-1 6410613 YP_001991927.1 CDS Rpal_2944 NC_011004.1 3217511 3217843 R TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: bja:blr4588 hypothetical protein; hemimethylated DNA binding protein complement(3217511..3217843) Rhodopseudomonas palustris TIE-1 6410614 YP_001991928.1 CDS Rpal_2945 NC_011004.1 3217966 3218922 D PFAM: auxin efflux carrier; KEGG: bja:bll4587 malonate transporter; auxin efflux carrier 3217966..3218922 Rhodopseudomonas palustris TIE-1 6410615 YP_001991929.1 CDS Rpal_2946 NC_011004.1 3218929 3220125 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bja:blr4586 2-octaprenyl-6-methoxyphenyl hydroxylase; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3218929..3220125) Rhodopseudomonas palustris TIE-1 6410616 YP_001991930.1 CDS Rpal_2947 NC_011004.1 3220259 3220993 D KEGG: nwi:Nwi_1506 CDP-alcohol phosphatidyltransferase; phosphatidylcholine synthase 3220259..3220993 Rhodopseudomonas palustris TIE-1 6410617 YP_001991931.1 CDS Rpal_2948 NC_011004.1 3220990 3221712 D PFAM: Integral membrane protein TerC; KEGG: bja:bll4584 hypothetical protein; integral membrane protein TerC 3220990..3221712 Rhodopseudomonas palustris TIE-1 6410618 YP_001991932.1 CDS Rpal_2949 NC_011004.1 3221799 3222773 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:bll4583 quinone oxidoreductase; alcohol dehydrogenase zinc-binding domain-containing protein 3221799..3222773 Rhodopseudomonas palustris TIE-1 6410619 YP_001991933.1 CDS rimO NC_011004.1 3222952 3224277 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase complement(3222952..3224277) Rhodopseudomonas palustris TIE-1 6410620 YP_001991934.1 CDS Rpal_2951 NC_011004.1 3224676 3225590 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_1913 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3224676..3225590) Rhodopseudomonas palustris TIE-1 6410621 YP_001991935.1 CDS Rpal_2952 NC_011004.1 3225692 3226648 D PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; KEGG: mms:mma_3086 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component; nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein 3225692..3226648 Rhodopseudomonas palustris TIE-1 6410622 YP_001991936.1 CDS Rpal_2953 NC_011004.1 3226656 3227540 D PFAM: ABC transporter inner membrane protein; KEGG: mms:mma_3085 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein 3226656..3227540 Rhodopseudomonas palustris TIE-1 6410623 YP_001991937.1 CDS Rpal_2954 NC_011004.1 3227533 3228351 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mms:mma_3084 sulfonate/nitrate transport system ATP-binding protein; ABC transporter 3227533..3228351 Rhodopseudomonas palustris TIE-1 6410624 YP_001991938.1 CDS Rpal_2955 NC_011004.1 3228353 3229204 D KEGG: mms:mma_3083 hypothetical protein; hypothetical protein 3228353..3229204 Rhodopseudomonas palustris TIE-1 6410625 YP_001991939.1 CDS Rpal_2956 NC_011004.1 3229221 3229985 R PFAM: LamB/YcsF family protein; KEGG: bbt:BBta_4134 hypothetical protein; LamB/YcsF family protein complement(3229221..3229985) Rhodopseudomonas palustris TIE-1 6410626 YP_001991940.1 CDS Rpal_2957 NC_011004.1 3230013 3231023 R TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: nha:Nham_2041 allophanate hydrolase subunit 2; urea amidolyase complement(3230013..3231023) Rhodopseudomonas palustris TIE-1 6410627 YP_001991941.1 CDS Rpal_2958 NC_011004.1 3231020 3231748 R PFAM: Allophanate hydrolase subunit 1; KEGG: nha:Nham_2040 hypothetical protein; allophanate hydrolase subunit 1 complement(3231020..3231748) Rhodopseudomonas palustris TIE-1 6410628 YP_001991942.1 CDS Rpal_2959 NC_011004.1 3231969 3232682 D PFAM: Dimethylmenaquinone methyltransferase; KEGG: bbt:BBta_4131 hypothetical protein; hypothetical protein 3231969..3232682 Rhodopseudomonas palustris TIE-1 6410629 YP_001991943.1 CDS Rpal_2960 NC_011004.1 3232695 3233102 D PFAM: cupin; KEGG: bra:BRADO3800 hypothetical protein; cupin 3232695..3233102 Rhodopseudomonas palustris TIE-1 6410630 YP_001991944.1 CDS Rpal_2961 NC_011004.1 3233234 3234124 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 3233234..3234124 Rhodopseudomonas palustris TIE-1 6410631 YP_001991945.1 CDS mscL NC_011004.1 3234135 3234614 D homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3234135..3234614 Rhodopseudomonas palustris TIE-1 6410632 YP_001991946.1 CDS smpB NC_011004.1 3234652 3235125 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 3234652..3235125 Rhodopseudomonas palustris TIE-1 6410633 YP_001991947.1 CDS Rpal_2964 NC_011004.1 3235148 3235726 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bja:bll5069 BcpB protein; redoxin domain-containing protein 3235148..3235726 Rhodopseudomonas palustris TIE-1 6410634 YP_001991948.1 CDS Rpal_2965 NC_011004.1 3235839 3236513 R PFAM: uracil-DNA glycosylase superfamily; KEGG: nha:Nham_2258 uracil-DNA glycosylase superfamily; uracil-DNA glycosylase superfamily complement(3235839..3236513) Rhodopseudomonas palustris TIE-1 6410635 YP_001991949.1 CDS Rpal_2966 NC_011004.1 3236519 3237169 R PFAM: protein of unknown function DUF88; KEGG: bja:blr5067 hypothetical protein; hypothetical protein complement(3236519..3237169) Rhodopseudomonas palustris TIE-1 6410636 YP_001991950.1 CDS Rpal_2967 NC_011004.1 3237516 3237908 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3237516..3237908 Rhodopseudomonas palustris TIE-1 6410637 YP_001991951.1 CDS Rpal_2968 NC_011004.1 3238174 3240456 D KEGG: bra:BRADO4468 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase); TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 3238174..3240456 Rhodopseudomonas palustris TIE-1 6410638 YP_001991952.1 CDS Rpal_2969 NC_011004.1 3240606 3241370 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 3240606..3241370 Rhodopseudomonas palustris TIE-1 6410639 YP_001991953.1 CDS acpS NC_011004.1 3241367 3241807 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 3241367..3241807 Rhodopseudomonas palustris TIE-1 6410640 YP_001991954.1 CDS Rpal_2971 NC_011004.1 3242049 3242807 D KEGG: nwi:Nwi_1919 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 3242049..3242807 Rhodopseudomonas palustris TIE-1 6410641 YP_001991955.1 CDS Rpal_2972 NC_011004.1 3242804 3243622 D PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: bra:BRADO4463 ribonuclease III (modular protein); ribonuclease III 3242804..3243622 Rhodopseudomonas palustris TIE-1 6410642 YP_001991956.1 CDS era NC_011004.1 3243615 3244538 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 3243615..3244538 Rhodopseudomonas palustris TIE-1 6410643 YP_001991957.1 CDS Rpal_2974 NC_011004.1 3244535 3244936 D KEGG: bja:bll5059 hypothetical protein; hypothetical protein 3244535..3244936 Rhodopseudomonas palustris TIE-1 6410644 YP_001991958.1 CDS recO NC_011004.1 3244979 3245731 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 3244979..3245731 Rhodopseudomonas palustris TIE-1 6410645 YP_001991959.1 CDS Rpal_2976 NC_011004.1 3245771 3246640 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: pna:Pnap_0622 NmrA family protein; NmrA family protein complement(3245771..3246640) Rhodopseudomonas palustris TIE-1 6410646 YP_001991960.1 CDS Rpal_2977 NC_011004.1 3246723 3247235 D PFAM: helix-turn-helix HxlR type; KEGG: mrd:Mrad2831_0163 transcriptional regulator, HxlR family; HxlR family transcriptional regulator 3246723..3247235 Rhodopseudomonas palustris TIE-1 6410647 YP_001991961.1 CDS Rpal_2978 NC_011004.1 3247245 3249506 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3247245..3249506 Rhodopseudomonas palustris TIE-1 6410648 YP_001991962.1 CDS Rpal_2979 NC_011004.1 3249592 3251022 D PFAM: Citrate transporter; KEGG: bja:bll7122 hypothetical protein; citrate transporter 3249592..3251022 Rhodopseudomonas palustris TIE-1 6410649 YP_001991963.1 CDS Rpal_2980 NC_011004.1 3251036 3251233 R hypothetical protein complement(3251036..3251233) Rhodopseudomonas palustris TIE-1 6410650 YP_001991964.1 CDS Rpal_2981 NC_011004.1 3251507 3252859 D TIGRFAM: Mn2+/Fe2+ transporter NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: bra:BRADO4439 manganese transport protein MntH; manganese transport protein MntH 3251507..3252859 Rhodopseudomonas palustris TIE-1 6410651 YP_001991965.1 CDS Rpal_2982 NC_011004.1 3252919 3253740 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; cupin; KEGG: rru:Rru_A1951 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3252919..3253740) Rhodopseudomonas palustris TIE-1 6410652 YP_001991966.1 CDS Rpal_2983 NC_011004.1 3253847 3255940 D PFAM: fusaric acid resistance protein conserved region; KEGG: rru:Rru_A1952 fusaric acid resistance protein conserved region; fusaric acid resistance protein 3253847..3255940 Rhodopseudomonas palustris TIE-1 6410653 YP_001991967.1 CDS Rpal_2984 NC_011004.1 3255930 3256145 D PFAM: protein of unknown function DUF1656; KEGG: rru:Rru_A1953 hypothetical protein; hypothetical protein 3255930..3256145 Rhodopseudomonas palustris TIE-1 6410654 YP_001991968.1 CDS Rpal_2985 NC_011004.1 3256142 3257044 D PFAM: secretion protein HlyD family protein; KEGG: rru:Rru_A1954 secretion protein HlyD; secretion protein HlyD family protein 3256142..3257044 Rhodopseudomonas palustris TIE-1 6410655 YP_001991969.1 CDS Rpal_2986 NC_011004.1 3257136 3257912 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(3257136..3257912) Rhodopseudomonas palustris TIE-1 6410656 YP_001991970.1 CDS Rpal_2987 NC_011004.1 3257981 3258508 R PFAM: RDD domain containing protein; KEGG: nha:Nham_2241 hypothetical protein; RDD domain-containing protein complement(3257981..3258508) Rhodopseudomonas palustris TIE-1 6410657 YP_001991971.1 CDS Rpal_2988 NC_011004.1 3258666 3259718 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(3258666..3259718) Rhodopseudomonas palustris TIE-1 6410658 YP_001991972.1 CDS Rpal_2989 NC_011004.1 3259912 3260376 D KEGG: bbt:BBta_4654 membrane protein of unknown function; hypothetical protein 3259912..3260376 Rhodopseudomonas palustris TIE-1 6410659 YP_001991973.1 CDS Rpal_2990 NC_011004.1 3260454 3262019 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 3260454..3262019 Rhodopseudomonas palustris TIE-1 6410660 YP_001991974.1 CDS Rpal_2991 NC_011004.1 3262372 3262890 D PFAM: regulatory protein MarR; KEGG: bbt:BBta_4653 transcriptional regulatory protein, MarR family; MarR family transcriptional regulator 3262372..3262890 Rhodopseudomonas palustris TIE-1 6410661 YP_001991975.1 CDS Rpal_2992 NC_011004.1 3263104 3263331 D KEGG: bja:bsl5035 hypothetical protein; hypothetical protein 3263104..3263331 Rhodopseudomonas palustris TIE-1 6410662 YP_001991976.1 CDS Rpal_2993 NC_011004.1 3263348 3263563 D KEGG: bja:bsl5034 hypothetical protein; hypothetical protein 3263348..3263563 Rhodopseudomonas palustris TIE-1 6410663 YP_001991977.1 CDS Rpal_2994 NC_011004.1 3263578 3264144 D KEGG: bbt:BBta_3895 hypothetical protein; hypothetical protein 3263578..3264144 Rhodopseudomonas palustris TIE-1 6410664 YP_001991978.1 CDS Rpal_2995 NC_011004.1 3264200 3264601 D PFAM: globin; KEGG: oan:Oant_1478 sec-independent protein translocase protein TatC; globin 3264200..3264601 Rhodopseudomonas palustris TIE-1 6410665 YP_001991979.1 CDS Rpal_2996 NC_011004.1 3264749 3265621 R YghU; B2989; one of eight glutathione transferase proteins from E. coli; glutathione S-transferase complement(3264749..3265621) Rhodopseudomonas palustris TIE-1 6410666 YP_001991980.1 CDS Rpal_2997 NC_011004.1 3265888 3266094 D hypothetical protein 3265888..3266094 Rhodopseudomonas palustris TIE-1 6410667 YP_001991981.1 CDS Rpal_2998 NC_011004.1 3266280 3267332 D hypothetical protein 3266280..3267332 Rhodopseudomonas palustris TIE-1 6410668 YP_001991982.1 CDS Rpal_2999 NC_011004.1 3267335 3268054 D PFAM: methyltransferase type 11; KEGG: sgl:SG0905 biotin synthesis protein BioC; type 11 methyltransferase 3267335..3268054 Rhodopseudomonas palustris TIE-1 6410669 YP_001991983.1 CDS Rpal_3002 NC_011004.1 3269581 3269862 R PFAM: plasmid stabilization system; KEGG: eba:ebB110 protein of the plasmid stabilization system; plasmid stabilization system protein complement(3269581..3269862) Rhodopseudomonas palustris TIE-1 6410672 YP_001991984.1 CDS Rpal_3003 NC_011004.1 3269859 3270146 R KEGG: ccr:CC_2879 hypothetical protein; hypothetical protein complement(3269859..3270146) Rhodopseudomonas palustris TIE-1 6410673 YP_001991985.1 CDS glyA NC_011004.1 3270499 3271797 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3270499..3271797 Rhodopseudomonas palustris TIE-1 6410674 YP_001991986.1 CDS nrdR NC_011004.1 3271900 3272382 D PFAM: ATP-cone domain protein; KEGG: bja:bll5032 hypothetical protein; NrdR family transcriptional regulator 3271900..3272382 Rhodopseudomonas palustris TIE-1 6410675 YP_001991987.1 CDS Rpal_3006 NC_011004.1 3272379 3273548 D TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: bja:bll5031 riboflavin biosynthesis protein; riboflavin biosynthesis protein RibD 3272379..3273548 Rhodopseudomonas palustris TIE-1 6410676 YP_001991988.1 CDS Rpal_3007 NC_011004.1 3273559 3274167 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 3273559..3274167 Rhodopseudomonas palustris TIE-1 6410677 YP_001991989.1 CDS ribH NC_011004.1 3274297 3274788 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 3274297..3274788 Rhodopseudomonas palustris TIE-1 6410678 YP_001991990.1 CDS nusB NC_011004.1 3274794 3275318 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 3274794..3275318 Rhodopseudomonas palustris TIE-1 6410679 YP_001991991.1 CDS Rpal_3010 NC_011004.1 3275433 3276176 D KEGG: mlo:mlr9505 hypothetical protein; hypothetical protein 3275433..3276176 Rhodopseudomonas palustris TIE-1 6410680 YP_001991992.1 CDS Rpal_3011 NC_011004.1 3276298 3277269 D KEGG: bra:BRADO4424 thiamin-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase 3276298..3277269 Rhodopseudomonas palustris TIE-1 6410681 YP_001991993.1 CDS hppA NC_011004.1 3277500 3279620 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 3277500..3279620 Rhodopseudomonas palustris TIE-1 6410682 YP_001991994.1 CDS Rpal_3013 NC_011004.1 3279783 3280025 D KEGG: bra:BRADO3464 hypothetical protein; hypothetical protein 3279783..3280025 Rhodopseudomonas palustris TIE-1 6410683 YP_001991995.1 CDS Rpal_3014 NC_011004.1 3280300 3280458 D KEGG: bbt:BBta_7678 hypothetical protein; hypothetical protein 3280300..3280458 Rhodopseudomonas palustris TIE-1 6410684 YP_001991996.1 CDS Rpal_3015 NC_011004.1 3280494 3281357 D PFAM: alpha/beta hydrolase fold; KEGG: noc:Noc_0991 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3280494..3281357 Rhodopseudomonas palustris TIE-1 6410685 YP_001991997.1 CDS Rpal_3016 NC_011004.1 3281428 3281913 R PFAM: SmpA/OmlA domain protein; KEGG: bja:blr5024 hypothetical protein; SmpA/OmlA domain-containing protein complement(3281428..3281913) Rhodopseudomonas palustris TIE-1 6410686 YP_001991998.1 CDS Rpal_3017 NC_011004.1 3282022 3282558 D PFAM: Ubiquinol-cytochrome C chaperone; KEGG: nha:Nham_1583 ubiquinol-cytochrome C chaperone; ubiquinol-cytochrome C chaperone 3282022..3282558 Rhodopseudomonas palustris TIE-1 6410687 YP_001991999.1 CDS Rpal_3018 NC_011004.1 3282576 3283142 D KEGG: bra:BRADO4419 hypothetical protein; hypothetical protein 3282576..3283142 Rhodopseudomonas palustris TIE-1 6410688 YP_001992000.1 CDS Rpal_3019 NC_011004.1 3283383 3284444 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 3283383..3284444 Rhodopseudomonas palustris TIE-1 6410689 YP_001992001.1 CDS Rpal_3020 NC_011004.1 3284441 3285418 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 3284441..3285418 Rhodopseudomonas palustris TIE-1 6410690 YP_001992002.1 CDS ihfA NC_011004.1 3285552 3285908 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 3285552..3285908 Rhodopseudomonas palustris TIE-1 6410691 YP_001992003.1 CDS Rpal_3022 NC_011004.1 3285923 3286675 D PFAM: regulatory protein MerR; KEGG: bja:bll5018 hypothetical protein; MerR family transcriptional regulator 3285923..3286675 Rhodopseudomonas palustris TIE-1 6410692 YP_001992004.1 CDS Rpal_3023 NC_011004.1 3287119 3287328 R hypothetical protein complement(3287119..3287328) Rhodopseudomonas palustris TIE-1 6410694 YP_001992005.1 CDS Rpal_3024 NC_011004.1 3287325 3287492 R hypothetical protein complement(3287325..3287492) Rhodopseudomonas palustris TIE-1 6410695 YP_001992006.1 CDS Rpal_3025 NC_011004.1 3287489 3288544 R PFAM: integrase family protein; KEGG: bja:blr8004 probable site-specific integrase/recombinase; integrase family protein complement(3287489..3288544) Rhodopseudomonas palustris TIE-1 6410696 YP_001992007.1 CDS Rpal_3026 NC_011004.1 3288516 3288761 R KEGG: xau:Xaut_3429 hypothetical protein; hypothetical protein complement(3288516..3288761) Rhodopseudomonas palustris TIE-1 6410697 YP_001992008.1 CDS Rpal_3027 NC_011004.1 3288758 3289210 R hypothetical protein complement(3288758..3289210) Rhodopseudomonas palustris TIE-1 6410698 YP_001992009.1 CDS Rpal_3028 NC_011004.1 3289212 3289610 R KEGG: mlo:mll7975 hypothetical protein; hypothetical protein complement(3289212..3289610) Rhodopseudomonas palustris TIE-1 6410699 YP_001992010.1 CDS Rpal_3029 NC_011004.1 3289607 3289858 R KEGG: rsp:RSP_4227 hypothetical protein; hypothetical protein complement(3289607..3289858) Rhodopseudomonas palustris TIE-1 6410700 YP_001992011.1 CDS Rpal_3030 NC_011004.1 3289855 3290271 R PFAM: NinB family protein; KEGG: aha:AHA_2039 NinB protein; NinB family protein complement(3289855..3290271) Rhodopseudomonas palustris TIE-1 6410701 YP_001992012.1 CDS Rpal_3031 NC_011004.1 3290268 3290873 R PFAM: heat shock protein DnaJ domain protein; KEGG: oan:Oant_1556 heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein complement(3290268..3290873) Rhodopseudomonas palustris TIE-1 6410702 YP_001992013.1 CDS Rpal_3032 NC_011004.1 3291088 3291714 R PFAM: exonuclease, phage-type; KEGG: xau:Xaut_3679 hypothetical protein; exonuclease, phage-type complement(3291088..3291714) Rhodopseudomonas palustris TIE-1 6410703 YP_001992014.1 CDS Rpal_3033 NC_011004.1 3291725 3292738 R KEGG: gox:GOX2479 hypothetical protein; hypothetical protein complement(3291725..3292738) Rhodopseudomonas palustris TIE-1 6410704 YP_001992015.1 CDS Rpal_3034 NC_011004.1 3292743 3293534 R PFAM: ERF family protein; KEGG: rsq:Rsph17025_1819 ERF family protein; ERF family protein complement(3292743..3293534) Rhodopseudomonas palustris TIE-1 6410705 YP_001992016.1 CDS Rpal_3035 NC_011004.1 3293534 3293662 R hypothetical protein complement(3293534..3293662) Rhodopseudomonas palustris TIE-1 6410706 YP_001992017.1 CDS Rpal_3036 NC_011004.1 3293782 3294084 R hypothetical protein complement(3293782..3294084) Rhodopseudomonas palustris TIE-1 6410707 YP_001992018.1 CDS Rpal_3037 NC_011004.1 3294081 3294194 R hypothetical protein complement(3294081..3294194) Rhodopseudomonas palustris TIE-1 6410708 YP_001992019.1 CDS Rpal_3038 NC_011004.1 3294191 3294376 R hypothetical protein complement(3294191..3294376) Rhodopseudomonas palustris TIE-1 6410709 YP_001992020.1 CDS Rpal_3039 NC_011004.1 3294373 3294498 R hypothetical protein complement(3294373..3294498) Rhodopseudomonas palustris TIE-1 6410710 YP_001992021.1 CDS Rpal_3040 NC_011004.1 3294504 3294725 R hypothetical protein complement(3294504..3294725) Rhodopseudomonas palustris TIE-1 6410711 YP_001992022.1 CDS Rpal_3041 NC_011004.1 3294722 3294838 R hypothetical protein complement(3294722..3294838) Rhodopseudomonas palustris TIE-1 6410712 YP_001992023.1 CDS Rpal_3042 NC_011004.1 3294854 3295150 R hypothetical protein complement(3294854..3295150) Rhodopseudomonas palustris TIE-1 6410713 YP_001992024.1 CDS Rpal_3043 NC_011004.1 3295280 3295378 R hypothetical protein complement(3295280..3295378) Rhodopseudomonas palustris TIE-1 6410714 YP_001992025.1 CDS Rpal_3044 NC_011004.1 3295393 3296187 R PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: gdi:GDI3658 protease; phage repressor complement(3295393..3296187) Rhodopseudomonas palustris TIE-1 6410715 YP_001992026.1 CDS Rpal_3045 NC_011004.1 3296316 3296417 D hypothetical protein 3296316..3296417 Rhodopseudomonas palustris TIE-1 6410716 YP_001992027.1 CDS Rpal_3046 NC_011004.1 3296414 3296788 D hypothetical protein 3296414..3296788 Rhodopseudomonas palustris TIE-1 6410717 YP_001992028.1 CDS Rpal_3047 NC_011004.1 3296936 3297316 D hypothetical protein 3296936..3297316 Rhodopseudomonas palustris TIE-1 6410718 YP_001992029.1 CDS Rpal_3048 NC_011004.1 3297346 3298215 D PFAM: Chromosomal replication initiator DnaA domain; KEGG: lhe:lhv_0001 chromosomal replication initiation protein; Chromosomal replication initiator DnaA domain 3297346..3298215 Rhodopseudomonas palustris TIE-1 6410719 YP_001992030.1 CDS Rpal_3049 NC_011004.1 3298216 3298410 D hypothetical protein 3298216..3298410 Rhodopseudomonas palustris TIE-1 6410720 YP_001992031.1 CDS Rpal_3050 NC_011004.1 3298410 3299045 D KEGG: nar:Saro_2760 hypothetical protein; hypothetical protein 3298410..3299045 Rhodopseudomonas palustris TIE-1 6410721 YP_001992032.1 CDS Rpal_3051 NC_011004.1 3299042 3299242 D hypothetical protein 3299042..3299242 Rhodopseudomonas palustris TIE-1 6410722 YP_001992033.1 CDS Rpal_3052 NC_011004.1 3299297 3300208 D KEGG: bur:Bcep18194_A5241 hypothetical protein; hypothetical protein 3299297..3300208 Rhodopseudomonas palustris TIE-1 6410723 YP_001992034.1 CDS Rpal_3053 NC_011004.1 3300656 3301144 D hypothetical protein 3300656..3301144 Rhodopseudomonas palustris TIE-1 6410724 YP_001992035.1 CDS Rpal_3054 NC_011004.1 3301147 3301314 D hypothetical protein 3301147..3301314 Rhodopseudomonas palustris TIE-1 6410725 YP_001992036.1 CDS Rpal_3055 NC_011004.1 3301321 3301824 D KEGG: mlo:mll0464 bacteriophage packaging protein GP3-like protein; bacteriophage packaging protein GP3-like protein 3301321..3301824 Rhodopseudomonas palustris TIE-1 6410726 YP_001992037.1 CDS Rpal_3056 NC_011004.1 3301883 3303148 D KEGG: dac:Daci_1942 phage terminase, large subunit, PBSX family; phage terminase, large subunit, PBSX family 3301883..3303148 Rhodopseudomonas palustris TIE-1 6410727 YP_001992038.1 CDS Rpal_3057 NC_011004.1 3303145 3303765 D hypothetical protein 3303145..3303765 Rhodopseudomonas palustris TIE-1 6410728 YP_001992039.1 CDS Rpal_3058 NC_011004.1 3303769 3305973 D KEGG: azc:AZC_0840 hypothetical protein; hypothetical protein 3303769..3305973 Rhodopseudomonas palustris TIE-1 6410729 YP_001992040.1 CDS Rpal_3059 NC_011004.1 3305977 3306396 D KEGG: bbt:BBta_5780 hypothetical protein; hypothetical protein 3305977..3306396 Rhodopseudomonas palustris TIE-1 6410730 YP_001992041.1 CDS Rpal_3060 NC_011004.1 3306403 3307422 D KEGG: bbt:BBta_5779 hypothetical protein; hypothetical protein 3306403..3307422 Rhodopseudomonas palustris TIE-1 6410731 YP_001992042.1 CDS Rpal_3061 NC_011004.1 3307423 3308199 D KEGG: bbt:BBta_5778 hypothetical protein; hypothetical protein 3307423..3308199 Rhodopseudomonas palustris TIE-1 6410732 YP_001992043.1 CDS Rpal_3062 NC_011004.1 3308274 3309239 D KEGG: azc:AZC_0841 hypothetical protein; hypothetical protein 3308274..3309239 Rhodopseudomonas palustris TIE-1 6410733 YP_001992044.1 CDS Rpal_3063 NC_011004.1 3309418 3310485 D KEGG: azc:AZC_0843 hypothetical protein; hypothetical protein 3309418..3310485 Rhodopseudomonas palustris TIE-1 6410734 YP_001992045.1 CDS Rpal_3064 NC_011004.1 3310558 3310959 D KEGG: azc:AZC_0844 hypothetical protein; hypothetical protein 3310558..3310959 Rhodopseudomonas palustris TIE-1 6410735 YP_001992046.1 CDS Rpal_3065 NC_011004.1 3311064 3311702 D KEGG: azc:AZC_0845 hypothetical protein; hypothetical protein 3311064..3311702 Rhodopseudomonas palustris TIE-1 6410736 YP_001992047.1 CDS Rpal_3066 NC_011004.1 3311702 3313180 D KEGG: bbt:BBta_5777 hypothetical protein; hypothetical protein 3311702..3313180 Rhodopseudomonas palustris TIE-1 6410737 YP_001992048.1 CDS Rpal_3067 NC_011004.1 3313177 3313491 D KEGG: bbt:BBta_5776 hypothetical protein; hypothetical protein 3313177..3313491 Rhodopseudomonas palustris TIE-1 6410738 YP_001992049.1 CDS Rpal_3068 NC_011004.1 3313484 3313885 D KEGG: bbt:BBta_5775 hypothetical protein; hypothetical protein 3313484..3313885 Rhodopseudomonas palustris TIE-1 6410739 YP_001992050.1 CDS Rpal_3069 NC_011004.1 3313885 3314754 D KEGG: bbt:BBta_5772 hypothetical protein; hypothetical protein 3313885..3314754 Rhodopseudomonas palustris TIE-1 6410740 YP_001992051.1 CDS Rpal_3070 NC_011004.1 3314758 3316623 D KEGG: lma:LmjF35.0520 proteophosphoglycan ppg4; hypothetical protein 3314758..3316623 Rhodopseudomonas palustris TIE-1 6410741 YP_001992052.1 CDS Rpal_3071 NC_011004.1 3316623 3318791 D KEGG: rle:RL3926 hypothetical protein; hypothetical protein 3316623..3318791 Rhodopseudomonas palustris TIE-1 6410742 YP_001992053.1 CDS Rpal_3072 NC_011004.1 3319539 3319793 D hypothetical protein 3319539..3319793 Rhodopseudomonas palustris TIE-1 6410743 YP_001992054.1 CDS Rpal_3073 NC_011004.1 3320015 3320827 D PFAM: BRO domain protein; KEGG: saq:Sare_3791 prophage antirepressor; prophage antirepressor 3320015..3320827 Rhodopseudomonas palustris TIE-1 6410744 YP_001992055.1 CDS Rpal_3074 NC_011004.1 3320836 3321549 D KEGG: pde:Pden_3770 hypothetical protein; hypothetical protein 3320836..3321549 Rhodopseudomonas palustris TIE-1 6410745 YP_001992056.1 CDS Rpal_3075 NC_011004.1 3321546 3322526 D KEGG: bbt:BBta_5767 phage tail collar domain; phage tail collar domain 3321546..3322526 Rhodopseudomonas palustris TIE-1 6410746 YP_001992057.1 CDS Rpal_3076 NC_011004.1 3322561 3322779 D hypothetical protein 3322561..3322779 Rhodopseudomonas palustris TIE-1 6410747 YP_001992058.1 CDS Rpal_3077 NC_011004.1 3322779 3323312 D PFAM: glycoside hydrolase family 24; KEGG: csa:Csal_1392 glycoside hydrolase, family 24; glycoside hydrolase family protein 3322779..3323312 Rhodopseudomonas palustris TIE-1 6410748 YP_001992059.1 CDS Rpal_3078 NC_011004.1 3323316 3323783 D KEGG: nha:Nham_3316 hypothetical protein; hypothetical protein 3323316..3323783 Rhodopseudomonas palustris TIE-1 6410749 YP_001992060.1 CDS Rpal_3079 NC_011004.1 3323788 3323979 D hypothetical protein 3323788..3323979 Rhodopseudomonas palustris TIE-1 6410750 YP_001992061.1 CDS Rpal_3080 NC_011004.1 3323976 3324392 D hypothetical protein 3323976..3324392 Rhodopseudomonas palustris TIE-1 6410751 YP_001992062.1 CDS Rpal_3081 NC_011004.1 3324498 3324632 R hypothetical protein complement(3324498..3324632) Rhodopseudomonas palustris TIE-1 6410752 YP_001992063.1 CDS Rpal_3082 NC_011004.1 3324727 3324990 R KEGG: bja:bsl4534 hypothetical protein; hypothetical protein complement(3324727..3324990) Rhodopseudomonas palustris TIE-1 6410753 YP_001992064.1 CDS Rpal_3083 NC_011004.1 3325713 3325940 D hypothetical protein 3325713..3325940 Rhodopseudomonas palustris TIE-1 6410754 YP_001992065.1 CDS Rpal_3084 NC_011004.1 3326257 3328551 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bra:BRADO2299 ferric siderophore receptor protein precursor; signal peptide; TonB-dependent siderophore receptor 3326257..3328551 Rhodopseudomonas palustris TIE-1 6410755 YP_001992066.1 CDS Rpal_3085 NC_011004.1 3328711 3329148 D KEGG: bbt:BBta_7560 membrane protein of unknown function; hypothetical protein 3328711..3329148 Rhodopseudomonas palustris TIE-1 6410756 YP_001992067.1 CDS Rpal_3086 NC_011004.1 3329263 3329580 R hypothetical protein complement(3329263..3329580) Rhodopseudomonas palustris TIE-1 6410757 YP_001992068.1 CDS Rpal_3087 NC_011004.1 3329804 3330772 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll4986 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3329804..3330772 Rhodopseudomonas palustris TIE-1 6410758 YP_001992069.1 CDS Rpal_3088 NC_011004.1 3330811 3331596 D PFAM: protein of unknown function DUF169; KEGG: bja:bll4979 hypothetical protein; hypothetical protein 3330811..3331596 Rhodopseudomonas palustris TIE-1 6410759 YP_001992070.1 CDS Rpal_3089 NC_011004.1 3331756 3333312 R TIGRFAM: undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: bra:BRADO4231 bacterial sugar transferase family protein; undecaprenyl-phosphate glucose phosphotransferase complement(3331756..3333312) Rhodopseudomonas palustris TIE-1 6410760 YP_001992071.1 CDS Rpal_3090 NC_011004.1 3333423 3334565 R PFAM: glycosyl transferase group 1; KEGG: nha:Nham_2465 glycosyl transferase, group 1; group 1 glycosyl transferase complement(3333423..3334565) Rhodopseudomonas palustris TIE-1 6410761 YP_001992072.1 CDS Rpal_3091 NC_011004.1 3334834 3337188 D PFAM: lipopolysaccharide biosynthesis protein; KEGG: bja:bll4972 probable succinoglycan transport protein; lipopolysaccharide biosynthesis protein 3334834..3337188 Rhodopseudomonas palustris TIE-1 6410762 YP_001992073.1 CDS Rpal_3092 NC_011004.1 3337268 3338461 R KEGG: bra:BRADO4228 conserved hypothetical protein; acyl-CoA N-acyltransferase related protein; hypothetical protein complement(3337268..3338461) Rhodopseudomonas palustris TIE-1 6410763 YP_001992074.1 CDS Rpal_3093 NC_011004.1 3338592 3339644 D PFAM: polysaccharide deacetylase; KEGG: bra:BRADO4227 polysaccharide deacetylase; polysaccharide deacetylase 3338592..3339644 Rhodopseudomonas palustris TIE-1 6410764 YP_001992075.1 CDS Rpal_3094 NC_011004.1 3339710 3340192 R PFAM: Ferritin Dps family protein; KEGG: eba:ebA1978 DNA-binding ferritin-like protein (oxidative damage protectant); ferritin Dps family protein complement(3339710..3340192) Rhodopseudomonas palustris TIE-1 6410765 YP_001992076.1 CDS Rpal_3095 NC_011004.1 3340548 3341480 D KEGG: bra:BRADO1425 conserved hypothetical protein; signal peptide; hypothetical protein 3340548..3341480 Rhodopseudomonas palustris TIE-1 6410766 YP_001992077.1 CDS Rpal_3096 NC_011004.1 3341568 3341780 R KEGG: bra:BRADO4226 hypothetical protein; hypothetical protein complement(3341568..3341780) Rhodopseudomonas palustris TIE-1 6410767 YP_001992078.1 CDS Rpal_3097 NC_011004.1 3341877 3342989 D PFAM: cytochrome oxidase assembly; KEGG: bja:bll4968 cytochrome oxidase assembly factor; cytochrome oxidase assembly 3341877..3342989 Rhodopseudomonas palustris TIE-1 6410768 YP_001992079.1 CDS Rpal_3098 NC_011004.1 3343003 3343680 R PFAM: regulatory protein TetR; KEGG: hne:HNE_2415 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3343003..3343680) Rhodopseudomonas palustris TIE-1 6410769 YP_001992080.1 CDS Rpal_3099 NC_011004.1 3343682 3345421 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: mjl:Mjls_2332 thiamine pyrophosphate enzyme TPP binding domain protein; thiamine pyrophosphate protein TPP binding domain-containing protein complement(3343682..3345421) Rhodopseudomonas palustris TIE-1 6410770 YP_001992081.1 CDS Rpal_3100 NC_011004.1 3345505 3345921 D KEGG: aby:ABAYE3100 zinc-binding dehydrogenase; hypothetical protein 3345505..3345921 Rhodopseudomonas palustris TIE-1 6410771 YP_001992082.1 CDS Rpal_3101 NC_011004.1 3346011 3346583 R PFAM: protein of unknown function DUF1211; KEGG: bbt:BBta_5128 membrane protein of unknown function; hypothetical protein complement(3346011..3346583) Rhodopseudomonas palustris TIE-1 6410772 YP_001992083.1 CDS Rpal_3102 NC_011004.1 3346611 3347891 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(3346611..3347891) Rhodopseudomonas palustris TIE-1 6410773 YP_001992084.1 CDS Rpal_3103 NC_011004.1 3347986 3348570 R KEGG: bja:blr4966 hypothetical protein; hypothetical protein complement(3347986..3348570) Rhodopseudomonas palustris TIE-1 6410774 YP_001992085.1 CDS Rpal_3104 NC_011004.1 3348720 3349547 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3348720..3349547) Rhodopseudomonas palustris TIE-1 6410775 YP_001992086.1 CDS Rpal_3105 NC_011004.1 3349638 3350066 D PFAM: thioesterase superfamily protein; KEGG: bja:bll4964 hypothetical protein; thioesterase superfamily protein 3349638..3350066 Rhodopseudomonas palustris TIE-1 6410776 YP_001992087.1 CDS rplM NC_011004.1 3350222 3350686 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3350222..3350686 Rhodopseudomonas palustris TIE-1 6410777 YP_001992088.1 CDS rpsI NC_011004.1 3350688 3351170 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3350688..3351170 Rhodopseudomonas palustris TIE-1 6410778 YP_001992089.1 CDS Rpal_3108 NC_011004.1 3351445 3352680 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bja:bll4961 hypothetical protein; diguanylate cyclase 3351445..3352680 Rhodopseudomonas palustris TIE-1 6410779 YP_001992090.1 CDS Rpal_3109 NC_011004.1 3352759 3353061 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bbt:BBta_4588 hypothetical protein; antibiotic biosynthesis monooxygenase 3352759..3353061 Rhodopseudomonas palustris TIE-1 6410780 YP_001992091.1 CDS Rpal_3110 NC_011004.1 3353045 3354196 R PFAM: protein of unknown function UPF0118; KEGG: nha:Nham_2235 protein of unknown function UPF0118; hypothetical protein complement(3353045..3354196) Rhodopseudomonas palustris TIE-1 6410781 YP_001992092.1 CDS Rpal_3111 NC_011004.1 3354458 3355405 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: nha:Nham_2012 rare lipoprotein A; rare lipoprotein A 3354458..3355405 Rhodopseudomonas palustris TIE-1 6410782 YP_001992093.1 CDS Rpal_3112 NC_011004.1 3355434 3356381 R PFAM: alpha/beta hydrolase fold; KEGG: bja:blr4520 epoxide hydrolase; alpha/beta hydrolase fold protein complement(3355434..3356381) Rhodopseudomonas palustris TIE-1 6410783 YP_001992094.1 CDS Rpal_3113 NC_011004.1 3356526 3357767 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: bja:bll4519 penicillin binding protein; serine-type D-Ala-D-Ala carboxypeptidase 3356526..3357767 Rhodopseudomonas palustris TIE-1 6410784 YP_001992095.1 CDS Rpal_3114 NC_011004.1 3357770 3358462 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 3357770..3358462 Rhodopseudomonas palustris TIE-1 6410785 YP_001992096.1 CDS Rpal_3115 NC_011004.1 3358459 3359514 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 3358459..3359514 Rhodopseudomonas palustris TIE-1 6410786 YP_001992097.1 CDS Rpal_3116 NC_011004.1 3359595 3361139 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 3359595..3361139 Rhodopseudomonas palustris TIE-1 6410787 YP_001992098.1 CDS Rpal_3117 NC_011004.1 3361143 3361931 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: nwi:Nwi_1461 TatD-related deoxyribonuclease; TatD family hydrolase 3361143..3361931 Rhodopseudomonas palustris TIE-1 6410788 YP_001992099.1 CDS Rpal_3118 NC_011004.1 3361957 3362760 D KEGG: nha:Nham_2006 hypothetical protein; hypothetical protein 3361957..3362760 Rhodopseudomonas palustris TIE-1 6410789 YP_001992100.1 CDS Rpal_3119 NC_011004.1 3362955 3364604 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(3362955..3364604) Rhodopseudomonas palustris TIE-1 6410790 YP_001992101.1 CDS Rpal_3120 NC_011004.1 3364659 3366542 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbt:BBta_4095 TRAP-type C4-dicarboxylate transport system, fusion of small and large permease proteins (DctQ/DctM domains); TRAP dicarboxylate transporter subunit DctM complement(3364659..3366542) Rhodopseudomonas palustris TIE-1 6410791 YP_001992102.1 CDS Rpal_3121 NC_011004.1 3366555 3367574 R TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:blr4511 probable ABC transporter substrate-binding protein; TRAP dicarboxylate transporter subunit DctP complement(3366555..3367574) Rhodopseudomonas palustris TIE-1 6410792 YP_001992103.1 CDS Rpal_3122 NC_011004.1 3368852 3369547 D PFAM: protein of unknown function DUF125 transmembrane; KEGG: xau:Xaut_4967 protein of unknown function DUF125 transmembrane; hypothetical protein 3368852..3369547 Rhodopseudomonas palustris TIE-1 6410793 YP_001992104.1 CDS Rpal_3123 NC_011004.1 3369640 3370977 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: bbr:BB1784 flavocytochrome; Ferric reductase transmembrane protein domain-containing protein complement(3369640..3370977) Rhodopseudomonas palustris TIE-1 6410794 YP_001992105.1 CDS Rpal_3124 NC_011004.1 3371068 3371535 R KEGG: xau:Xaut_1368 hypothetical protein; hypothetical protein complement(3371068..3371535) Rhodopseudomonas palustris TIE-1 6410795 YP_001992106.1 CDS Rpal_3125 NC_011004.1 3371625 3371789 R KEGG: bja:blr6772 hypothetical protein; hypothetical protein complement(3371625..3371789) Rhodopseudomonas palustris TIE-1 6410796 YP_001992107.1 CDS Rpal_3126 NC_011004.1 3372094 3373152 D KEGG: cak:Caul_0471 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; signal transduction histidine kinase 3372094..3373152 Rhodopseudomonas palustris TIE-1 6410797 YP_001992108.1 CDS Rpal_3127 NC_011004.1 3373183 3373929 R PFAM: methyltransferase type 11; KEGG: gur:Gura_3509 methyltransferase type 11; type 11 methyltransferase complement(3373183..3373929) Rhodopseudomonas palustris TIE-1 6410798 YP_001992109.1 CDS Rpal_3128 NC_011004.1 3374371 3377298 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; monovalent cation/H+ antiporter subunit A 3374371..3377298 Rhodopseudomonas palustris TIE-1 6410799 YP_001992110.1 CDS Rpal_3129 NC_011004.1 3377289 3377630 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C 3377289..3377630 Rhodopseudomonas palustris TIE-1 6410800 YP_001992111.1 CDS Rpal_3130 NC_011004.1 3377627 3379261 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D 3377627..3379261 Rhodopseudomonas palustris TIE-1 6410801 YP_001992112.1 CDS Rpal_3131 NC_011004.1 3379258 3379746 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E 3379258..3379746 Rhodopseudomonas palustris TIE-1 6410802 YP_001992113.1 CDS Rpal_3132 NC_011004.1 3379743 3380024 D subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit F 3379743..3380024 Rhodopseudomonas palustris TIE-1 6410803 YP_001992114.1 CDS Rpal_3133 NC_011004.1 3380021 3380392 D TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: net:Neut_1702 monovalent cation/H+ antiporter subunit G; monovalent cation/proton antiporter subunit MnhG/PhaG 3380021..3380392 Rhodopseudomonas palustris TIE-1 6410804 YP_001992115.1 CDS Rpal_3134 NC_011004.1 3380410 3381198 R PFAM: alanine racemase domain protein; KEGG: rru:Rru_A1141 hypothetical protein; alanine racemase domain-containing protein complement(3380410..3381198) Rhodopseudomonas palustris TIE-1 6410805 YP_001992116.1 CDS Rpal_3135 NC_011004.1 3381219 3382523 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(3381219..3382523) Rhodopseudomonas palustris TIE-1 6410806 YP_001992117.1 CDS Rpal_3136 NC_011004.1 3382677 3384167 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rru:Rru_A1143 regulatory protein GntR; GntR family transcriptional regulator complement(3382677..3384167) Rhodopseudomonas palustris TIE-1 6410807 YP_001992118.1 CDS Rpal_3137 NC_011004.1 3384275 3385507 D TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: rru:Rru_A1144 benzoate membrane transport protein; benzoate transporter 3384275..3385507 Rhodopseudomonas palustris TIE-1 6410808 YP_001992119.1 CDS Rpal_3138 NC_011004.1 3385504 3386370 D TIGRFAM: pyridoxal kinase; PFAM: phosphomethylpyrimidine kinase type-1; KEGG: rru:Rru_A1145 pyridoxal kinase; pyridoxal kinase 3385504..3386370 Rhodopseudomonas palustris TIE-1 6410809 YP_001992120.1 CDS Rpal_3141 NC_011004.1 3387475 3387972 R PFAM: Collagen triple helix repeat; KEGG: mex:Mext_0878 collagen triple helix repeat; Collagen triple helix repeat complement(3387475..3387972) Rhodopseudomonas palustris TIE-1 6410811 YP_001992121.1 CDS Rpal_3142 NC_011004.1 3388219 3390282 D PFAM: UvrD/REP helicase; KEGG: nha:Nham_3768 UvrD/REP helicase; UvrD/REP helicase 3388219..3390282 Rhodopseudomonas palustris TIE-1 6410812 YP_001992122.1 CDS Rpal_3143 NC_011004.1 3390289 3390612 R KEGG: gvi:gll2745 hypothetical protein; hypothetical protein complement(3390289..3390612) Rhodopseudomonas palustris TIE-1 6410813 YP_001992123.1 CDS Rpal_3144 NC_011004.1 3390685 3391422 R KEGG: bja:blr4499 hypothetical protein; hypothetical protein complement(3390685..3391422) Rhodopseudomonas palustris TIE-1 6410814 YP_001992124.1 CDS Rpal_3145 NC_011004.1 3391486 3392124 D KEGG: bbt:BBta_4085 nitrile hydratase subunit alpha (nitrilase) (NHase); TIGRFAM: nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase alpha chain; nitrile hydratase subunit alpha 3391486..3392124 Rhodopseudomonas palustris TIE-1 6410815 YP_001992125.1 CDS Rpal_3146 NC_011004.1 3392121 3392777 D PFAM: nitrile hydratase beta subunit; KEGG: bra:BRADO3846 nitrile hydratase subunit beta (nitrilase) (NHase); nitrile hydratase 3392121..3392777 Rhodopseudomonas palustris TIE-1 6410816 YP_001992126.1 CDS Rpal_3147 NC_011004.1 3392777 3393199 D KEGG: bja:bll4496 hypothetical protein; hypothetical protein 3392777..3393199 Rhodopseudomonas palustris TIE-1 6410817 YP_001992127.1 CDS Rpal_3148 NC_011004.1 3393323 3394456 D KEGG: mlo:mll2082 hypothetical protein; cellulose biosynthesis (CelD)-like protein 3393323..3394456 Rhodopseudomonas palustris TIE-1 6410818 YP_001992128.1 CDS Rpal_3149 NC_011004.1 3394429 3395721 R PFAM: beta-lactamase; KEGG: bja:blr5541 hypothetical protein; beta-lactamase complement(3394429..3395721) Rhodopseudomonas palustris TIE-1 6410819 YP_001992129.1 CDS Rpal_3150 NC_011004.1 3395803 3396516 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: bja:blr4495 hypothetical protein; exsB protein complement(3395803..3396516) Rhodopseudomonas palustris TIE-1 6410820 YP_001992130.1 CDS mazG NC_011004.1 3396633 3397457 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 3396633..3397457 Rhodopseudomonas palustris TIE-1 6410821 YP_001992131.1 CDS Rpal_3152 NC_011004.1 3397536 3398831 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: bbt:BBta_7487 inner membrane protein (UPF0053 family) with 2 CBS domains; hypothetical protein 3397536..3398831 Rhodopseudomonas palustris TIE-1 6410822 YP_001992132.1 CDS Rpal_3153 NC_011004.1 3398828 3399190 D KEGG: art:Arth_0893 hypothetical protein; hypothetical protein 3398828..3399190 Rhodopseudomonas palustris TIE-1 6410823 YP_001992133.1 CDS Rpal_3154 NC_011004.1 3399306 3399809 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(3399306..3399809) Rhodopseudomonas palustris TIE-1 6410824 YP_001992134.1 CDS Rpal_3155 NC_011004.1 3400347 3401087 D PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: nwi:Nwi_1567 outer-membrane protein precursor; OmpA domain-containing protein transmembrane region-containing protein 3400347..3401087 Rhodopseudomonas palustris TIE-1 6410825 YP_001992135.1 CDS uvrA NC_011004.1 3401397 3404414 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 3401397..3404414 Rhodopseudomonas palustris TIE-1 6410826 YP_001992136.1 CDS Rpal_3157 NC_011004.1 3404526 3405446 D KEGG: stp:Strop_1997 hypothetical protein; hypothetical protein 3404526..3405446 Rhodopseudomonas palustris TIE-1 6410827 YP_001992137.1 CDS Rpal_3158 NC_011004.1 3405906 3406280 D KEGG: nha:Nham_2096 hypothetical protein; hypothetical protein 3405906..3406280 Rhodopseudomonas palustris TIE-1 6410828 YP_001992138.1 CDS Rpal_3159 NC_011004.1 3406325 3407245 R KEGG: swd:Swoo_4747 methionine sulfoxide reductase A; methionine sulfoxide reductase A complement(3406325..3407245) Rhodopseudomonas palustris TIE-1 6410829 YP_001992139.1 CDS Rpal_3160 NC_011004.1 3407255 3407503 R PFAM: protein of unknown function DUF433; KEGG: bja:bsl4703 hypothetical protein; hypothetical protein complement(3407255..3407503) Rhodopseudomonas palustris TIE-1 6410830 YP_001992140.1 CDS Rpal_3161 NC_011004.1 3407648 3408424 D PFAM: ion transport protein; ion transport 2 domain protein; KEGG: mex:Mext_1106 ion transport 2 domain protein; ion transport 2 domain-containing protein 3407648..3408424 Rhodopseudomonas palustris TIE-1 6410831 YP_001992141.1 CDS Rpal_3162 NC_011004.1 3408462 3409016 D KEGG: bja:blr4716 hypothetical protein; hypothetical protein 3408462..3409016 Rhodopseudomonas palustris TIE-1 6410832 YP_001992142.1 CDS Rpal_3163 NC_011004.1 3409293 3409583 D KEGG: bja:bsr4721 hypothetical protein; hypothetical protein 3409293..3409583 Rhodopseudomonas palustris TIE-1 6410833 YP_001992143.1 CDS Rpal_3164 NC_011004.1 3409716 3410123 D PFAM: thioesterase superfamily protein; KEGG: pla:Plav_2975 thioesterase superfamily protein; thioesterase superfamily protein 3409716..3410123 Rhodopseudomonas palustris TIE-1 6410834 YP_001992144.1 CDS Rpal_3165 NC_011004.1 3410426 3410818 R KEGG: bbt:BBta_4393 hypothetical protein; hypothetical protein complement(3410426..3410818) Rhodopseudomonas palustris TIE-1 6410835 YP_001992145.1 CDS Rpal_3166 NC_011004.1 3411200 3412096 D KEGG: bja:blr4723 hypothetical protein; hypothetical protein 3411200..3412096 Rhodopseudomonas palustris TIE-1 6410836 YP_001992146.1 CDS Rpal_3167 NC_011004.1 3412596 3412748 D PFAM: protein of unknown function DUF1127; KEGG: bja:bsr4726 hypothetical protein; hypothetical protein 3412596..3412748 Rhodopseudomonas palustris TIE-1 6410837 YP_001992147.1 CDS Rpal_3168 NC_011004.1 3412885 3414321 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 3412885..3414321 Rhodopseudomonas palustris TIE-1 6410838 YP_001992148.1 CDS Rpal_3169 NC_011004.1 3414351 3415223 R KEGG: bja:bll4732 phytoene synthase; phytoene synthase complement(3414351..3415223) Rhodopseudomonas palustris TIE-1 6410839 YP_001992149.1 CDS Rpal_3170 NC_011004.1 3415220 3415603 R PFAM: protein of unknown function DUF498; KEGG: bbt:BBta_4404 hypothetical protein; hypothetical protein complement(3415220..3415603) Rhodopseudomonas palustris TIE-1 6410840 YP_001992150.1 CDS secF NC_011004.1 3415764 3416882 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(3415764..3416882) Rhodopseudomonas palustris TIE-1 6410841 YP_001992151.1 CDS secD NC_011004.1 3416908 3418509 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(3416908..3418509) Rhodopseudomonas palustris TIE-1 6410842 YP_001992152.1 CDS Rpal_3173 NC_011004.1 3418554 3418994 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: bra:BRADO4036 preprotein translocase (YajC); preprotein translocase subunit YajC complement(3418554..3418994) Rhodopseudomonas palustris TIE-1 6410843 YP_001992153.1 CDS Rpal_3174 NC_011004.1 3419185 3420174 D PFAM: protein of unknown function DUF815; KEGG: bbt:BBta_4408 ATPase family protein; hypothetical protein 3419185..3420174 Rhodopseudomonas palustris TIE-1 6410844 YP_001992154.1 CDS Rpal_3175 NC_011004.1 3420343 3422043 D KEGG: bja:bll1872 hypothetical protein; hypothetical protein 3420343..3422043 Rhodopseudomonas palustris TIE-1 6410845 YP_001992155.1 CDS Rpal_3176 NC_011004.1 3422090 3422890 R KEGG: bja:blr5741 hypothetical protein; hypothetical protein complement(3422090..3422890) Rhodopseudomonas palustris TIE-1 6410846 YP_001992156.1 CDS Rpal_3177 NC_011004.1 3423035 3424615 D PFAM: alpha/beta hydrolase fold; transcriptional activator domain; KEGG: bja:bll5740 hypothetical protein; SARP family transcriptional regulator 3423035..3424615 Rhodopseudomonas palustris TIE-1 6410847 YP_001992157.1 CDS Rpal_3178 NC_011004.1 3424716 3426131 R PFAM: peptidoglycan-binding LysM; peptidase M23; KEGG: nha:Nham_1795 peptidase M23B; peptidase M23 complement(3424716..3426131) Rhodopseudomonas palustris TIE-1 6410848 YP_001992158.1 CDS Rpal_3179 NC_011004.1 3426252 3426905 R KEGG: nha:Nham_1794 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase type 11; protein-L-isoaspartate O-methyltransferase complement(3426252..3426905) Rhodopseudomonas palustris TIE-1 6410849 YP_001992159.1 CDS Rpal_3180 NC_011004.1 3427127 3427501 D PFAM: response regulator receiver; KEGG: bbt:BBta_4411 response regulator receiver (CheY-like protein); response regulator receiver protein 3427127..3427501 Rhodopseudomonas palustris TIE-1 6410850 YP_001992160.1 CDS Rpal_3181 NC_011004.1 3427510 3428037 R PFAM: protein of unknown function UPF0157; KEGG: lsp:Bsph_3139 UPF0157 protein; hypothetical protein complement(3427510..3428037) Rhodopseudomonas palustris TIE-1 6410851 YP_001992161.1 CDS surE NC_011004.1 3428249 3429016 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(3428249..3429016) Rhodopseudomonas palustris TIE-1 6410852 YP_001992162.1 CDS Rpal_3184 NC_011004.1 3431648 3432304 R PFAM: SCP-like extracellular; KEGG: bbt:BBta_6058 hypothetical protein; hypothetical protein complement(3431648..3432304) Rhodopseudomonas palustris TIE-1 6410854 YP_001992163.1 CDS Rpal_3185 NC_011004.1 3432310 3433614 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(3432310..3433614) Rhodopseudomonas palustris TIE-1 6410855 YP_001992164.1 CDS Rpal_3186 NC_011004.1 3433725 3434162 R KEGG: azc:AZC_2096 autotransporter; autotransporter complement(3433725..3434162) Rhodopseudomonas palustris TIE-1 6410856 YP_001992165.1 CDS Rpal_3187 NC_011004.1 3434186 3434995 R TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: bja:bll4749 sec-independent protein translocase protein; Sec-independent protein translocase subunit TatC complement(3434186..3434995) Rhodopseudomonas palustris TIE-1 6410857 YP_001992166.1 CDS Rpal_3188 NC_011004.1 3434992 3435501 R KEGG: bja:bll4750 sec-independent protein translocase protein; sec-independent protein translocase protein complement(3434992..3435501) Rhodopseudomonas palustris TIE-1 6410858 YP_001992167.1 CDS tatA NC_011004.1 3435718 3435954 R TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A complement(3435718..3435954) Rhodopseudomonas palustris TIE-1 6410859 YP_001992168.1 CDS Rpal_3190 NC_011004.1 3436101 3437399 R TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: bra:BRADO4048 hypothetical protein; segregation and condensation protein B complement(3436101..3437399) Rhodopseudomonas palustris TIE-1 6410860 YP_001992169.1 CDS Rpal_3191 NC_011004.1 3437420 3438253 R PFAM: chromosome segregation and condensation protein ScpA; KEGG: bja:bll4753 hypothetical protein; chromosome segregation and condensation protein ScpA complement(3437420..3438253) Rhodopseudomonas palustris TIE-1 6410861 YP_001992170.1 CDS Rpal_3192 NC_011004.1 3438250 3439275 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: bja:bll4754 glycosyl hydrolase; beta-N-acetylhexosaminidase complement(3438250..3439275) Rhodopseudomonas palustris TIE-1 6410862 YP_001992171.1 CDS Rpal_3193 NC_011004.1 3439324 3440961 R PFAM: Sporulation domain protein; KEGG: nha:Nham_1759 sporulation related; sporulation domain-containing protein complement(3439324..3440961) Rhodopseudomonas palustris TIE-1 6410863 YP_001992172.1 CDS argS NC_011004.1 3441046 3442824 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(3441046..3442824) Rhodopseudomonas palustris TIE-1 6410864 YP_001992173.1 CDS Rpal_3195 NC_011004.1 3442891 3444093 R KEGG: bja:bll4758 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase complement(3442891..3444093) Rhodopseudomonas palustris TIE-1 6410865 YP_001992174.1 CDS Rpal_3196 NC_011004.1 3444212 3444544 D TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bja:blr4759 hypothetical protein; iron-sulfur cluster assembly accessory protein 3444212..3444544 Rhodopseudomonas palustris TIE-1 6410866 YP_001992175.1 CDS Rpal_3197 NC_011004.1 3444775 3445788 D KEGG: bja:blr7173 methyl accepting chemotaxis protein; methyl accepting chemotaxis protein 3444775..3445788 Rhodopseudomonas palustris TIE-1 6410867 YP_001992176.1 CDS Rpal_3198 NC_011004.1 3445785 3446849 D KEGG: fph:Fphi_0374 hypothetical protein; hypothetical protein 3445785..3446849 Rhodopseudomonas palustris TIE-1 6410868 YP_001992177.1 CDS Rpal_3199 NC_011004.1 3446876 3447613 R KEGG: pst:PSPTO_2262 hypothetical protein; hypothetical protein complement(3446876..3447613) Rhodopseudomonas palustris TIE-1 6410869 YP_001992178.1 CDS Rpal_3200 NC_011004.1 3447735 3448694 R KEGG: pst:PSPTO_2262 hypothetical protein; hypothetical protein complement(3447735..3448694) Rhodopseudomonas palustris TIE-1 6410870 YP_001992179.1 CDS Rpal_3201 NC_011004.1 3448857 3449195 R PFAM: helix-turn-helix domain protein; KEGG: ret:RHE_PF00441 hypothetical protein; helix-turn-helix domain-containing protein complement(3448857..3449195) Rhodopseudomonas palustris TIE-1 6410871 YP_001992180.1 CDS Rpal_3202 NC_011004.1 3449378 3450169 D TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bbt:BBta_4438 exodeoxyribonuclease III; exodeoxyribonuclease III Xth 3449378..3450169 Rhodopseudomonas palustris TIE-1 6410872 YP_001992181.1 CDS Rpal_3203 NC_011004.1 3450336 3451157 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: nha:Nham_1754 Sel1-like; Sel1 domain-containing protein repeat-containing protein complement(3450336..3451157) Rhodopseudomonas palustris TIE-1 6410873 YP_001992182.1 CDS Rpal_3204 NC_011004.1 3451144 3451587 R hypothetical protein complement(3451144..3451587) Rhodopseudomonas palustris TIE-1 6410874 YP_001992183.1 CDS Rpal_3205 NC_011004.1 3451820 3453241 R E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(3451820..3453241) Rhodopseudomonas palustris TIE-1 6410875 YP_001992184.1 CDS Rpal_3206 NC_011004.1 3453317 3454723 R KEGG: nha:Nham_1751 branched-chain alpha-keto acid dehydrogenase subunit E2; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(3453317..3454723) Rhodopseudomonas palustris TIE-1 6410876 YP_001992185.1 CDS Rpal_3207 NC_011004.1 3454736 3455032 R KEGG: bbt:BBta_4461 hypothetical protein; hypothetical protein complement(3454736..3455032) Rhodopseudomonas palustris TIE-1 6410877 YP_001992186.1 CDS Rpal_3208 NC_011004.1 3455458 3456867 R catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta complement(3455458..3456867) Rhodopseudomonas palustris TIE-1 6410878 YP_001992187.1 CDS Rpal_3209 NC_011004.1 3456926 3457960 R KEGG: bra:BRADO4087 pyruvate dehydrogenase E1 component, alpha subunit; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha complement(3456926..3457960) Rhodopseudomonas palustris TIE-1 6410879 YP_001992188.1 CDS Rpal_3210 NC_011004.1 3458113 3458430 R PFAM: Septum formation initiator; KEGG: bja:bll4786 hypothetical protein; septum formation initiator complement(3458113..3458430) Rhodopseudomonas palustris TIE-1 6410880 YP_001992189.1 CDS Rpal_3211 NC_011004.1 3458519 3459079 R PFAM: NADPH-dependent FMN reductase; KEGG: nha:Nham_1747 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(3458519..3459079) Rhodopseudomonas palustris TIE-1 6410881 YP_001992190.1 CDS Rpal_3212 NC_011004.1 3459218 3460360 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_3236 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(3459218..3460360) Rhodopseudomonas palustris TIE-1 6410882 YP_001992191.1 CDS Rpal_3213 NC_011004.1 3460453 3461067 D PFAM: lysine exporter; KEGG: mlo:mlr8191 hypothetical protein; lysine exporter 3460453..3461067 Rhodopseudomonas palustris TIE-1 6410883 YP_001992192.1 CDS Rpal_3214 NC_011004.1 3461221 3462024 R hypothetical protein complement(3461221..3462024) Rhodopseudomonas palustris TIE-1 6410884 YP_001992193.1 CDS Rpal_3215 NC_011004.1 3462109 3463242 R PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_4470 alcohol dehydrogenase-like protein GroES-like domain/NAD(P)-binding Rossmann-fold domain; alcohol dehydrogenase GroES domain-containing protein complement(3462109..3463242) Rhodopseudomonas palustris TIE-1 6410885 YP_001992194.1 CDS eno NC_011004.1 3463353 3464636 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(3463353..3464636) Rhodopseudomonas palustris TIE-1 6410886 YP_001992195.1 CDS Rpal_3217 NC_011004.1 3464823 3465299 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3464823..3465299 Rhodopseudomonas palustris TIE-1 6410887 YP_001992196.1 CDS Rpal_3218 NC_011004.1 3465422 3465766 D KEGG: bja:bll1339 hypothetical protein; hypothetical protein 3465422..3465766 Rhodopseudomonas palustris TIE-1 6410888 YP_001992197.1 CDS mdoD NC_011004.1 3466007 3467518 D involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 3466007..3467518 Rhodopseudomonas palustris TIE-1 6410890 YP_001992198.1 CDS Rpal_3221 NC_011004.1 3467506 3469671 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 3467506..3469671 Rhodopseudomonas palustris TIE-1 6410891 YP_001992199.1 CDS Rpal_3222 NC_011004.1 3469668 3470894 R PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_4473 permease of the major facilitator superfamily; major facilitator superfamily protein complement(3469668..3470894) Rhodopseudomonas palustris TIE-1 6410892 YP_001992200.1 CDS Rpal_3223 NC_011004.1 3470894 3471757 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(3470894..3471757) Rhodopseudomonas palustris TIE-1 6410893 YP_001992201.1 CDS Rpal_3224 NC_011004.1 3471754 3472647 R KEGG: azc:AZC_3066 hypothetical protein; hypothetical protein complement(3471754..3472647) Rhodopseudomonas palustris TIE-1 6410894 YP_001992202.1 CDS Rpal_3225 NC_011004.1 3472770 3473096 R PFAM: NIPSNAP family containing protein; KEGG: bbt:BBta_4475 hypothetical protein; NIPSNAP family containing protein complement(3472770..3473096) Rhodopseudomonas palustris TIE-1 6410895 YP_001992203.1 CDS Rpal_3226 NC_011004.1 3473173 3473460 D KEGG: swi:Swit_1213 protein of unknown function DUF497; hypothetical protein 3473173..3473460 Rhodopseudomonas palustris TIE-1 6410896 YP_001992204.1 CDS Rpal_3227 NC_011004.1 3473450 3473725 D KEGG: mex:Mext_0337 hypothetical protein; hypothetical protein 3473450..3473725 Rhodopseudomonas palustris TIE-1 6410897 YP_001992205.1 CDS Rpal_3228 NC_011004.1 3473763 3474620 R hypothetical protein complement(3473763..3474620) Rhodopseudomonas palustris TIE-1 6410898 YP_001992206.1 CDS Rpal_3229 NC_011004.1 3474751 3475128 D PFAM: hypothetical protein; KEGG: nwi:Nwi_1832 hypothetical protein; hypothetical protein 3474751..3475128 Rhodopseudomonas palustris TIE-1 6410899 YP_001992207.1 CDS Rpal_3230 NC_011004.1 3475240 3475386 D hypothetical protein 3475240..3475386 Rhodopseudomonas palustris TIE-1 6410900 YP_001992208.1 CDS pyrG NC_011004.1 3475400 3477031 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3475400..3477031) Rhodopseudomonas palustris TIE-1 6410901 YP_001992209.1 CDS secG NC_011004.1 3477198 3477602 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: bra:BRADO4104 preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(3477198..3477602) Rhodopseudomonas palustris TIE-1 6410902 YP_001992210.1 CDS Rpal_3233 NC_011004.1 3477778 3478554 R PFAM: triosephosphate isomerase; KEGG: bja:bll4807 triosephosphate isomerase; Triose-phosphate isomerase complement(3477778..3478554) Rhodopseudomonas palustris TIE-1 6410903 YP_001992211.1 CDS Rpal_3234 NC_011004.1 3478824 3480713 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bja:blr4808 probable peptidyl-prolyl cis-trans isomerse; PpiC-type peptidyl-prolyl cis-trans isomerase 3478824..3480713 Rhodopseudomonas palustris TIE-1 6410904 YP_001992212.1 CDS trpD NC_011004.1 3480750 3481766 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 3480750..3481766 Rhodopseudomonas palustris TIE-1 6410905 YP_001992213.1 CDS trpC NC_011004.1 3481897 3482694 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 3481897..3482694 Rhodopseudomonas palustris TIE-1 6410906 YP_001992214.1 CDS moaC NC_011004.1 3482705 3483235 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 3482705..3483235 Rhodopseudomonas palustris TIE-1 6410907 YP_001992215.1 CDS Rpal_3238 NC_011004.1 3483273 3485831 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bja:blr3815 cation-transporting ATPase; ATPase P 3483273..3485831 Rhodopseudomonas palustris TIE-1 6410908 YP_001992216.1 CDS Rpal_3239 NC_011004.1 3485868 3486005 R hypothetical protein complement(3485868..3486005) Rhodopseudomonas palustris TIE-1 6410909 YP_001992217.1 CDS Rpal_3240 NC_011004.1 3485959 3486435 R KEGG: nwi:Nwi_1114 hypothetical protein; hypothetical protein complement(3485959..3486435) Rhodopseudomonas palustris TIE-1 6410910 YP_001992218.1 CDS Rpal_3241 NC_011004.1 3486674 3487174 D PFAM: heat shock protein Hsp20; KEGG: pde:Pden_3146 heat shock protein HSP20; heat shock protein Hsp20 3486674..3487174 Rhodopseudomonas palustris TIE-1 6410911 YP_001992219.1 CDS Rpal_3242 NC_011004.1 3487343 3487591 D PFAM: type IV pilus assembly PilZ; KEGG: bja:bsr0173 hypothetical protein; type IV pilus assembly PilZ 3487343..3487591 Rhodopseudomonas palustris TIE-1 6410912 YP_001992220.1 CDS Rpal_3243 NC_011004.1 3487631 3488488 R PFAM: OmpA/MotB domain protein; KEGG: bbt:BBta_3511 chemotaxis protein MotB; OmpA/MotB domain-containing protein complement(3487631..3488488) Rhodopseudomonas palustris TIE-1 6410913 YP_001992221.1 CDS Rpal_3244 NC_011004.1 3488748 3489374 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bra:BRADO4115 haloacid dehalogenase-like hydrolase; HAD family hydrolase 3488748..3489374 Rhodopseudomonas palustris TIE-1 6410914 YP_001992222.1 CDS Rpal_3245 NC_011004.1 3489405 3489893 D KEGG: thioesterase superfamily; K07107; thioesterase superfamily protein 3489405..3489893 Rhodopseudomonas palustris TIE-1 6410915 YP_001992223.1 CDS Rpal_3246 NC_011004.1 3490041 3490454 D KEGG: chu:CHU_2313 rifampin ADP-ribosylating transferase; rifampin ADP-ribosylating transferase 3490041..3490454 Rhodopseudomonas palustris TIE-1 6410916 YP_001992224.1 CDS Rpal_3247 NC_011004.1 3490499 3490840 R KEGG: scl:sce2975 hypothetical protein; hypothetical protein complement(3490499..3490840) Rhodopseudomonas palustris TIE-1 6410917 YP_001992225.1 CDS Rpal_3248 NC_011004.1 3491040 3492251 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: bja:blr4825 molybdopterin biosynthesis protein; molybdenum cofactor synthesis domain-containing protein 3491040..3492251 Rhodopseudomonas palustris TIE-1 6410918 YP_001992226.1 CDS Rpal_3249 NC_011004.1 3492428 3493138 D Represses a number of genes involved in the response to DNA damage; LexA repressor 3492428..3493138 Rhodopseudomonas palustris TIE-1 6410919 YP_001992227.1 CDS Rpal_3250 NC_011004.1 3493210 3495477 R PFAM: ComEC/Rec2-related protein; KEGG: bja:bll4830 hypothetical protein; ComEC/Rec2-like protein complement(3493210..3495477) Rhodopseudomonas palustris TIE-1 6410920 YP_001992228.1 CDS Rpal_3251 NC_011004.1 3495569 3497251 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(3495569..3497251) Rhodopseudomonas palustris TIE-1 6410921 YP_001992229.1 CDS gltX NC_011004.1 3497413 3498834 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 3497413..3498834 Rhodopseudomonas palustris TIE-1 6410922 YP_001992230.1 CDS gltA NC_011004.1 3498985 3500289 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 3498985..3500289 Rhodopseudomonas palustris TIE-1 6410923 YP_001992231.1 CDS Rpal_3254 NC_011004.1 3500384 3501028 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: nha:Nham_3264 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase complement(3500384..3501028) Rhodopseudomonas palustris TIE-1 6410924 YP_001992232.1 CDS lpxB NC_011004.1 3501168 3502349 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(3501168..3502349) Rhodopseudomonas palustris TIE-1 6410925 YP_001992233.1 CDS Rpal_3256 NC_011004.1 3502346 3503203 R PFAM: protein of unknown function DUF1009; KEGG: nha:Nham_1706 protein of unknown function DUF1009; hypothetical protein complement(3502346..3503203) Rhodopseudomonas palustris TIE-1 6410926 YP_001992234.1 CDS Rpal_3257 NC_011004.1 3503219 3504061 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(3503219..3504061) Rhodopseudomonas palustris TIE-1 6410927 YP_001992235.1 CDS fabZ NC_011004.1 3504070 3504525 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(3504070..3504525) Rhodopseudomonas palustris TIE-1 6410928 YP_001992236.1 CDS lpxD NC_011004.1 3504525 3505607 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(3504525..3505607) Rhodopseudomonas palustris TIE-1 6410929 YP_001992237.1 CDS Rpal_3260 NC_011004.1 3505637 3508162 R TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: bbt:BBta_4509 exported protein of unknown function with surface antigen domain; outer membrane protein assembly complex, YaeT protein complement(3505637..3508162) Rhodopseudomonas palustris TIE-1 6410930 YP_001992238.1 CDS Rpal_3261 NC_011004.1 3508335 3509486 R TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: nwi:Nwi_1852 peptidase M50, membrane-associated zinc metallopeptidase; membrane-associated zinc metalloprotease complement(3508335..3509486) Rhodopseudomonas palustris TIE-1 6410931 YP_001992239.1 CDS Rpal_3262 NC_011004.1 3509532 3510755 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3509532..3510755) Rhodopseudomonas palustris TIE-1 6410932 YP_001992240.1 CDS Rpal_3263 NC_011004.1 3510760 3511608 R PFAM: phosphatidate cytidylyltransferase; KEGG: nha:Nham_1699 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(3510760..3511608) Rhodopseudomonas palustris TIE-1 6410933 YP_001992241.1 CDS Rpal_3264 NC_011004.1 3511614 3512372 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase complement(3511614..3512372) Rhodopseudomonas palustris TIE-1 6410934 YP_001992242.1 CDS frr NC_011004.1 3512584 3513144 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(3512584..3513144) Rhodopseudomonas palustris TIE-1 6410935 YP_001992243.1 CDS pyrH NC_011004.1 3513210 3513926 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(3513210..3513926) Rhodopseudomonas palustris TIE-1 6410936 YP_001992244.1 CDS tsf NC_011004.1 3513994 3514920 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(3513994..3514920) Rhodopseudomonas palustris TIE-1 6410937 YP_001992245.1 CDS rpsB NC_011004.1 3515045 3516040 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(3515045..3516040) Rhodopseudomonas palustris TIE-1 6410938 YP_001992246.1 CDS Rpal_3269 NC_011004.1 3516275 3518761 R PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: bja:bll4862 hypothetical protein; peptidase C14 caspase catalytic subunit p20 complement(3516275..3518761) Rhodopseudomonas palustris TIE-1 6410939 YP_001992247.1 CDS dnaE NC_011004.1 3518923 3522378 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(3518923..3522378) Rhodopseudomonas palustris TIE-1 6410940 YP_001992248.1 CDS Rpal_3271 NC_011004.1 3522551 3522649 R KEGG: bra:BRADO4146 hypothetical protein; hypothetical protein complement(3522551..3522649) Rhodopseudomonas palustris TIE-1 6410941 YP_001992249.1 CDS Rpal_3272 NC_011004.1 3522867 3523109 D KEGG: nha:Nham_2194 hypothetical protein; hypothetical protein 3522867..3523109 Rhodopseudomonas palustris TIE-1 6410942 YP_001992250.1 CDS Rpal_3273 NC_011004.1 3523215 3523469 D KEGG: nha:Nham_2194 hypothetical protein; hypothetical protein 3523215..3523469 Rhodopseudomonas palustris TIE-1 6410943 YP_001992251.1 CDS Rpal_3274 NC_011004.1 3523666 3524364 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2195 ABC transporter; ABC transporter complement(3523666..3524364) Rhodopseudomonas palustris TIE-1 6410944 YP_001992252.1 CDS Rpal_3275 NC_011004.1 3524376 3525644 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: nha:Nham_2196 lipoprotein releasing system, transmembrane protein, LolC/E family; lipoprotein releasing system transmembrane protein LolC/E family complement(3524376..3525644) Rhodopseudomonas palustris TIE-1 6410945 YP_001992253.1 CDS Rpal_3276 NC_011004.1 3525736 3527052 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(3525736..3527052) Rhodopseudomonas palustris TIE-1 6410946 YP_001992254.1 CDS Rpal_3277 NC_011004.1 3527228 3528814 R PFAM: copper resistance protein CopC; copper resistance D domain protein; KEGG: nha:Nham_2198 copper resistance D; copper resistance protein CopC complement(3527228..3528814) Rhodopseudomonas palustris TIE-1 6410947 YP_001992255.1 CDS Rpal_3278 NC_011004.1 3528832 3529362 R PFAM: nuclear export factor GLE1; KEGG: nha:Nham_2199 nuclear export factor GLE1; nuclear export factor GLE1 complement(3528832..3529362) Rhodopseudomonas palustris TIE-1 6410948 YP_001992256.1 CDS Rpal_3279 NC_011004.1 3529359 3529898 R PFAM: protein of unknown function DUF461; KEGG: bja:bll4880 hypothetical protein; hypothetical protein complement(3529359..3529898) Rhodopseudomonas palustris TIE-1 6410949 YP_001992257.1 CDS Rpal_3280 NC_011004.1 3530027 3530440 R KEGG: nha:Nham_2202 hypothetical protein; hypothetical protein complement(3530027..3530440) Rhodopseudomonas palustris TIE-1 6410950 YP_001992258.1 CDS Rpal_3281 NC_011004.1 3531053 3531334 R PFAM: protein of unknown function DUF1467; KEGG: bra:BRADO4167 hypothetical protein; hypothetical protein complement(3531053..3531334) Rhodopseudomonas palustris TIE-1 6410951 YP_001992259.1 CDS Rpal_3282 NC_011004.1 3531338 3531742 R KEGG: bbt:BBta_4545 glyoxalase I family protein; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; methylmalonyl-CoA epimerase complement(3531338..3531742) Rhodopseudomonas palustris TIE-1 6410952 YP_001992260.1 CDS Rpal_3283 NC_011004.1 3531784 3533454 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bra:BRADO4169 hydrolase of the metallo-beta-lactamase superfamily; beta-lactamase domain-containing protein complement(3531784..3533454) Rhodopseudomonas palustris TIE-1 6410953 YP_001992261.1 CDS Rpal_3284 NC_011004.1 3533454 3534260 R TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: bja:bll4903 biotin--protein ligase; biotin--acetyl-CoA-carboxylase ligase complement(3533454..3534260) Rhodopseudomonas palustris TIE-1 6410954 YP_001992262.1 CDS Rpal_3285 NC_011004.1 3534261 3535700 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(3534261..3535700) Rhodopseudomonas palustris TIE-1 6410955 YP_001992263.1 CDS Rpal_3286 NC_011004.1 3535720 3537237 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(3535720..3537237) Rhodopseudomonas palustris TIE-1 6410956 YP_001992264.1 CDS Rpal_3287 NC_011004.1 3537238 3539331 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(3537238..3539331) Rhodopseudomonas palustris TIE-1 6410957 YP_001992265.1 CDS Rpal_3288 NC_011004.1 3539391 3539702 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(3539391..3539702) Rhodopseudomonas palustris TIE-1 6410958 YP_001992266.1 CDS Rpal_3289 NC_011004.1 3539699 3540337 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(3539699..3540337) Rhodopseudomonas palustris TIE-1 6410959 YP_001992267.1 CDS Rpal_3290 NC_011004.1 3540347 3540835 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(3540347..3540835) Rhodopseudomonas palustris TIE-1 6410960 YP_001992268.1 CDS Rpal_3291 NC_011004.1 3540843 3541868 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(3540843..3541868) Rhodopseudomonas palustris TIE-1 6410961 YP_001992269.1 CDS Rpal_3292 NC_011004.1 3541878 3543953 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(3541878..3543953) Rhodopseudomonas palustris TIE-1 6410962 YP_001992270.1 CDS Rpal_3293 NC_011004.1 3543959 3545284 R part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F complement(3543959..3545284) Rhodopseudomonas palustris TIE-1 6410963 YP_001992271.1 CDS Rpal_3294 NC_011004.1 3545303 3545518 R KEGG: bra:BRADO4180 hypothetical protein; hypothetical protein complement(3545303..3545518) Rhodopseudomonas palustris TIE-1 6410964 YP_001992272.1 CDS Rpal_3295 NC_011004.1 3545515 3546264 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(3545515..3546264) Rhodopseudomonas palustris TIE-1 6410965 YP_001992273.1 CDS Rpal_3296 NC_011004.1 3546267 3547238 R TIGRFAM: methyltransferase FkbM family; KEGG: bja:bll4915 hypothetical protein; methyltransferase FkbM family protein complement(3546267..3547238) Rhodopseudomonas palustris TIE-1 6410966 YP_001992274.1 CDS Rpal_3297 NC_011004.1 3547235 3548443 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(3547235..3548443) Rhodopseudomonas palustris TIE-1 6410967 YP_001992275.1 CDS Rpal_3298 NC_011004.1 3548495 3549109 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C complement(3548495..3549109) Rhodopseudomonas palustris TIE-1 6410968 YP_001992276.1 CDS Rpal_3299 NC_011004.1 3549123 3549719 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(3549123..3549719) Rhodopseudomonas palustris TIE-1 6410969 YP_001992277.1 CDS Rpal_3300 NC_011004.1 3549731 3550096 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(3549731..3550096) Rhodopseudomonas palustris TIE-1 6410970 YP_001992278.1 CDS Rpal_3301 NC_011004.1 3550409 3550603 D KEGG: bja:bsl2206 hypothetical protein; hypothetical protein 3550409..3550603 Rhodopseudomonas palustris TIE-1 6410971 YP_001992279.1 CDS Rpal_3302 NC_011004.1 3551412 3551723 D PFAM: histone family protein DNA-binding protein; KEGG: nha:Nham_2223 histone-like DNA-binding protein; histone family protein DNA-binding protein 3551412..3551723 Rhodopseudomonas palustris TIE-1 6410973 YP_001992280.1 CDS Rpal_3303 NC_011004.1 3552021 3553274 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 3552021..3553274 Rhodopseudomonas palustris TIE-1 6410974 YP_001992281.1 CDS Rpal_3304 NC_011004.1 3553423 3554667 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mrd:Mrad2831_4789 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit 3553423..3554667 Rhodopseudomonas palustris TIE-1 6410975 YP_001992282.1 CDS Rpal_3305 NC_011004.1 3554696 3557836 D TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: azc:AZC_3305 hydrophobe/amphiphile efflux-1; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3554696..3557836 Rhodopseudomonas palustris TIE-1 6410976 YP_001992283.1 CDS Rpal_3306 NC_011004.1 3558335 3560986 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bja:blr0364 hypothetical protein; diguanylate cyclase/phosphodiesterase 3558335..3560986 Rhodopseudomonas palustris TIE-1 6410978 YP_001992284.1 CDS Rpal_3307 NC_011004.1 3560999 3563431 R KEGG: bra:BRADO4196 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA; ATPase AAA; SMART: ATPase AAA; ATP-dependent protease La complement(3560999..3563431) Rhodopseudomonas palustris TIE-1 6410979 YP_001992285.1 CDS clpX NC_011004.1 3563752 3565026 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(3563752..3565026) Rhodopseudomonas palustris TIE-1 6410980 YP_001992286.1 CDS Rpal_3309 NC_011004.1 3565419 3566057 R PFAM: peptidase S14 ClpP; KEGG: bbt:BBta_4573 ATP-dependent Clp protease proteolytic subunit (endopeptidase Clp); endopeptidase Clp complement(3565419..3566057) Rhodopseudomonas palustris TIE-1 6410981 YP_001992287.1 CDS tig NC_011004.1 3566370 3567728 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(3566370..3567728) Rhodopseudomonas palustris TIE-1 6410982 YP_001992288.1 CDS Rpal_3311 NC_011004.1 3568119 3568592 R KEGG: atu:Atu1192 transcriptional regulator, MarR family; hypothetical protein complement(3568119..3568592) Rhodopseudomonas palustris TIE-1 6410984 YP_001992289.1 CDS Rpal_3312 NC_011004.1 3568598 3569920 D PFAM: multicopper oxidase type 1; multicopper oxidase type 2; KEGG: nha:Nham_2231 twin-arginine translocation pathway signal; multicopper oxidase type 2 3568598..3569920 Rhodopseudomonas palustris TIE-1 6410985 YP_001992290.1 CDS Rpal_3313 NC_011004.1 3569969 3571468 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: bra:BRADO4203 conserved hypothetical protein; YjeF-related protein; kinase, ribokinase-like superfamily; carbohydrate kinase complement(3569969..3571468) Rhodopseudomonas palustris TIE-1 6410986 YP_001992291.1 CDS Rpal_3314 NC_011004.1 3571880 3572218 D PFAM: nitrogen regulatory protein P-II; KEGG: bja:blr4948 nitrogen regulatory protein PII; nitrogen regulatory protein P-II 3571880..3572218 Rhodopseudomonas palustris TIE-1 6410987 YP_001992292.1 CDS Rpal_3315 NC_011004.1 3572308 3573717 D TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: nha:Nham_2234 glutamine synthetase, type I; glutamine synthetase, type I 3572308..3573717 Rhodopseudomonas palustris TIE-1 6410988 YP_001992293.1 CDS Rpal_3316 NC_011004.1 3574002 3574751 D PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: hne:HNE_1537 transcriptional regulator, TetR family; TetR family transcriptional regulator 3574002..3574751 Rhodopseudomonas palustris TIE-1 6410989 YP_001992294.1 CDS Rpal_3317 NC_011004.1 3574764 3575375 D KEGG: xau:Xaut_4923 hypothetical protein; hypothetical protein 3574764..3575375 Rhodopseudomonas palustris TIE-1 6410990 YP_001992295.1 CDS Rpal_3318 NC_011004.1 3575518 3576795 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(3575518..3576795) Rhodopseudomonas palustris TIE-1 6410991 YP_001992296.1 CDS bioD NC_011004.1 3576792 3577430 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(3576792..3577430) Rhodopseudomonas palustris TIE-1 6410992 YP_001992297.1 CDS Rpal_3320 NC_011004.1 3577427 3578557 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(3577427..3578557) Rhodopseudomonas palustris TIE-1 6410993 YP_001992298.1 CDS Rpal_3321 NC_011004.1 3578698 3579261 R KEGG: nwi:Nwi_1498 hypothetical protein; hypothetical protein complement(3578698..3579261) Rhodopseudomonas palustris TIE-1 6410994 YP_001992299.1 CDS Rpal_3322 NC_011004.1 3579350 3580780 R PFAM: Amidase; KEGG: nar:Saro_3602 amidase; amidase complement(3579350..3580780) Rhodopseudomonas palustris TIE-1 6410995 YP_001992300.1 CDS Rpal_3323 NC_011004.1 3580980 3581969 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bbt:BBta_4121 phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(3580980..3581969) Rhodopseudomonas palustris TIE-1 6410996 YP_001992301.1 CDS Rpal_3324 NC_011004.1 3582078 3582977 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr4275 hypothetical transport protein; hypothetical protein complement(3582078..3582977) Rhodopseudomonas palustris TIE-1 6410997 YP_001992302.1 CDS Rpal_3325 NC_011004.1 3583642 3587415 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3583642..3587415 Rhodopseudomonas palustris TIE-1 6410998 YP_001992303.1 CDS Rpal_3326 NC_011004.1 3587744 3589258 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mex:Mext_1865 CMP/dCMP deaminase zinc-binding; zinc-binding CMP/dCMP deaminase 3587744..3589258 Rhodopseudomonas palustris TIE-1 6410999 YP_001992304.1 CDS Rpal_3327 NC_011004.1 3589422 3589670 D KEGG: nwi:Nwi_1574 hypothetical protein; hypothetical protein 3589422..3589670 Rhodopseudomonas palustris TIE-1 6411000 YP_001992305.1 CDS Rpal_3328 NC_011004.1 3589772 3590044 R hypothetical protein complement(3589772..3590044) Rhodopseudomonas palustris TIE-1 6411001 YP_001992306.1 CDS Rpal_3329 NC_011004.1 3590570 3591151 D hypothetical protein 3590570..3591151 Rhodopseudomonas palustris TIE-1 6411002 YP_001992307.1 CDS Rpal_3330 NC_011004.1 3591985 3592464 D hypothetical protein 3591985..3592464 Rhodopseudomonas palustris TIE-1 6411003 YP_001992308.1 CDS Rpal_3331 NC_011004.1 3592769 3593377 D hypothetical protein 3592769..3593377 Rhodopseudomonas palustris TIE-1 6411004 YP_001992309.1 CDS Rpal_3332 NC_011004.1 3594354 3595571 R KEGG: ret:RHE_CH01107 hypothetical protein; hypothetical protein complement(3594354..3595571) Rhodopseudomonas palustris TIE-1 6411005 YP_001992310.1 CDS Rpal_3333 NC_011004.1 3595583 3596422 R KEGG: rci:RRC34 hypothetical protein; hypothetical protein complement(3595583..3596422) Rhodopseudomonas palustris TIE-1 6411006 YP_001992311.1 CDS Rpal_3334 NC_011004.1 3596427 3596777 R hypothetical protein complement(3596427..3596777) Rhodopseudomonas palustris TIE-1 6411007 YP_001992312.1 CDS Rpal_3335 NC_011004.1 3596774 3597217 R KEGG: xau:Xaut_3722 hypothetical protein; hypothetical protein complement(3596774..3597217) Rhodopseudomonas palustris TIE-1 6411008 YP_001992313.1 CDS Rpal_3336 NC_011004.1 3597233 3598210 R KEGG: smd:Smed_1639 hypothetical protein; hypothetical protein complement(3597233..3598210) Rhodopseudomonas palustris TIE-1 6411009 YP_001992314.1 CDS Rpal_3337 NC_011004.1 3598204 3598554 R KEGG: acr:Acry_0904 peptidase M23B; peptidase M23B complement(3598204..3598554) Rhodopseudomonas palustris TIE-1 6411010 YP_001992315.1 CDS Rpal_3338 NC_011004.1 3598554 3598991 R hypothetical protein complement(3598554..3598991) Rhodopseudomonas palustris TIE-1 6411011 YP_001992316.1 CDS Rpal_3339 NC_011004.1 3598996 3599433 R hypothetical protein complement(3598996..3599433) Rhodopseudomonas palustris TIE-1 6411012 YP_001992317.1 CDS Rpal_3340 NC_011004.1 3599430 3599846 R hypothetical protein complement(3599430..3599846) Rhodopseudomonas palustris TIE-1 6411013 YP_001992318.1 CDS Rpal_3341 NC_011004.1 3599855 3600244 R hypothetical protein complement(3599855..3600244) Rhodopseudomonas palustris TIE-1 6411014 YP_001992319.1 CDS Rpal_3342 NC_011004.1 3600241 3602790 R KEGG: rsh:Rsph17029_0630 hypothetical protein; hypothetical protein complement(3600241..3602790) Rhodopseudomonas palustris TIE-1 6411015 YP_001992320.1 CDS Rpal_3343 NC_011004.1 3602792 3603265 R PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_5148 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3602792..3603265) Rhodopseudomonas palustris TIE-1 6411016 YP_001992321.1 CDS Rpal_3344 NC_011004.1 3603265 3603915 R KEGG: rsp:RSP_2992 hypothetical protein; hypothetical protein complement(3603265..3603915) Rhodopseudomonas palustris TIE-1 6411017 YP_001992322.1 CDS Rpal_3345 NC_011004.1 3603912 3604535 R KEGG: rsq:Rsph17025_2088 hypothetical protein; hypothetical protein complement(3603912..3604535) Rhodopseudomonas palustris TIE-1 6411018 YP_001992323.1 CDS Rpal_3346 NC_011004.1 3604532 3606580 R KEGG: nha:Nham_1606 hypothetical protein; hypothetical protein complement(3604532..3606580) Rhodopseudomonas palustris TIE-1 6411019 YP_001992324.1 CDS Rpal_3347 NC_011004.1 3606583 3606924 R KEGG: rsq:Rsph17025_2090 hypothetical protein; hypothetical protein complement(3606583..3606924) Rhodopseudomonas palustris TIE-1 6411020 YP_001992325.1 CDS Rpal_3348 NC_011004.1 3607017 3607346 R KEGG: rsq:Rsph17025_2091 hypothetical protein; hypothetical protein complement(3607017..3607346) Rhodopseudomonas palustris TIE-1 6411021 YP_001992326.1 CDS Rpal_3349 NC_011004.1 3607359 3608300 R KEGG: rsq:Rsph17025_2092 hypothetical protein; hypothetical protein complement(3607359..3608300) Rhodopseudomonas palustris TIE-1 6411022 YP_001992327.1 CDS Rpal_3350 NC_011004.1 3608303 3608473 R hypothetical protein complement(3608303..3608473) Rhodopseudomonas palustris TIE-1 6411023 YP_001992328.1 CDS Rpal_3351 NC_011004.1 3608470 3608916 R KEGG: rsq:Rsph17025_2093 hypothetical protein; hypothetical protein complement(3608470..3608916) Rhodopseudomonas palustris TIE-1 6411024 YP_001992329.1 CDS Rpal_3352 NC_011004.1 3608913 3609473 R TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis ( tail completion) protein; KEGG: pol:Bpro_3785 phage virion morphogenesis ( tail completion) protein; phage virion morphogenesis protein complement(3608913..3609473) Rhodopseudomonas palustris TIE-1 6411025 YP_001992330.1 CDS Rpal_3353 NC_011004.1 3609473 3609901 R PFAM: protein of unknown function DUF1320; KEGG: rsq:Rsph17025_2094 protein of unknown function DUF1320; hypothetical protein complement(3609473..3609901) Rhodopseudomonas palustris TIE-1 6411026 YP_001992331.1 CDS Rpal_3354 NC_011004.1 3609906 3610232 R hypothetical protein complement(3609906..3610232) Rhodopseudomonas palustris TIE-1 6411027 YP_001992332.1 CDS Rpal_3355 NC_011004.1 3610414 3610875 R KEGG: son:SO_0676 hypothetical protein; hypothetical protein complement(3610414..3610875) Rhodopseudomonas palustris TIE-1 6411029 YP_001992333.1 CDS Rpal_3356 NC_011004.1 3610887 3611777 R KEGG: rsq:Rsph17025_2096 Mu-like prophage major head subunit gpT-like protein; Mu-like prophage major head subunit gpT-like protein complement(3610887..3611777) Rhodopseudomonas palustris TIE-1 6411030 YP_001992334.1 CDS Rpal_3357 NC_011004.1 3611830 3612606 R KEGG: rsq:Rsph17025_2097 hypothetical protein; hypothetical protein complement(3611830..3612606) Rhodopseudomonas palustris TIE-1 6411031 YP_001992335.1 CDS Rpal_3358 NC_011004.1 3612762 3613868 R KEGG: rsq:Rsph17025_2098 Mu-like prophage I protein-like protein; Mu-like prophage I protein-like protein complement(3612762..3613868) Rhodopseudomonas palustris TIE-1 6411032 YP_001992336.1 CDS Rpal_3359 NC_011004.1 3614253 3614708 R hypothetical protein complement(3614253..3614708) Rhodopseudomonas palustris TIE-1 6411033 YP_001992337.1 CDS Rpal_3360 NC_011004.1 3614723 3615367 R PFAM: peptidase S24 and S26 domain protein; KEGG: bbt:BBta_5832 LexA repressor; phage repressor complement(3614723..3615367) Rhodopseudomonas palustris TIE-1 6411034 YP_001992338.1 CDS Rpal_3361 NC_011004.1 3615468 3615728 D KEGG: xau:Xaut_3691 transcriptional regulator, XRE family; hypothetical protein 3615468..3615728 Rhodopseudomonas palustris TIE-1 6411035 YP_001992339.1 CDS Rpal_3362 NC_011004.1 3615725 3615997 D hypothetical protein 3615725..3615997 Rhodopseudomonas palustris TIE-1 6411036 YP_001992340.1 CDS Rpal_3363 NC_011004.1 3615994 3616449 D KEGG: xau:Xaut_4526 hypothetical protein; hypothetical protein 3615994..3616449 Rhodopseudomonas palustris TIE-1 6411037 YP_001992341.1 CDS Rpal_3364 NC_011004.1 3616446 3616775 D hypothetical protein 3616446..3616775 Rhodopseudomonas palustris TIE-1 6411038 YP_001992342.1 CDS Rpal_3365 NC_011004.1 3616795 3618951 D PFAM: Integrase catalytic region; MuA-transposase/repressor protein CI DNA-binding; Transposase-like Mu; KEGG: azc:AZC_2128 transposase protein A; integrase catalytic subunit 3616795..3618951 Rhodopseudomonas palustris TIE-1 6411039 YP_001992343.1 CDS Rpal_3366 NC_011004.1 3618984 3619421 D hypothetical protein 3618984..3619421 Rhodopseudomonas palustris TIE-1 6411040 YP_001992344.1 CDS Rpal_3367 NC_011004.1 3619450 3620244 D KEGG: azc:AZC_2129 transposase protein B; transposase protein B 3619450..3620244 Rhodopseudomonas palustris TIE-1 6411041 YP_001992345.1 CDS Rpal_3368 NC_011004.1 3620241 3620621 D KEGG: azc:AZC_2130 hypothetical protein; hypothetical protein 3620241..3620621 Rhodopseudomonas palustris TIE-1 6411042 YP_001992346.1 CDS Rpal_3369 NC_011004.1 3620618 3621013 D KEGG: mag:amb0449 hypothetical protein; transcriptional regulator 3620618..3621013 Rhodopseudomonas palustris TIE-1 6411043 YP_001992347.1 CDS Rpal_3370 NC_011004.1 3621003 3621290 D hypothetical protein 3621003..3621290 Rhodopseudomonas palustris TIE-1 6411044 YP_001992348.1 CDS Rpal_3371 NC_011004.1 3621287 3621640 D hypothetical protein 3621287..3621640 Rhodopseudomonas palustris TIE-1 6411045 YP_001992349.1 CDS Rpal_3372 NC_011004.1 3621642 3622190 D PFAM: Mu Gam family protein; KEGG: mag:amb0454 Mu-like prophage FluMu host-nuclease inhibitor protein Gam; Mu Gam family protein 3621642..3622190 Rhodopseudomonas palustris TIE-1 6411046 YP_001992350.1 CDS Rpal_3373 NC_011004.1 3622187 3622582 D PFAM: LexA DNA-binding domain protein; KEGG: zmo:ZMO0199 LexA repressor; LexA family transcriptional repressor 3622187..3622582 Rhodopseudomonas palustris TIE-1 6411047 YP_001992351.1 CDS Rpal_3374 NC_011004.1 3622579 3623076 D PFAM: Chromosomal replication initiator DnaA domain; KEGG: gbe:GbCGDNIH1_0161 chromosomal replication initiator protein DnaA; Chromosomal replication initiator DnaA domain 3622579..3623076 Rhodopseudomonas palustris TIE-1 6411048 YP_001992352.1 CDS Rpal_3375 NC_011004.1 3623073 3623774 D PFAM: protein of unknown function DUF1018; KEGG: azc:AZC_2134 Mu-like prophage protein GP16; hypothetical protein 3623073..3623774 Rhodopseudomonas palustris TIE-1 6411049 YP_001992353.1 CDS Rpal_3376 NC_011004.1 3623776 3624174 D hypothetical protein 3623776..3624174 Rhodopseudomonas palustris TIE-1 6411050 YP_001992354.1 CDS Rpal_3377 NC_011004.1 3624178 3624759 D PFAM: GcrA cell cycle regulator; KEGG: nwi:Nwi_0512 GcrA cell cycle regulator; GcrA cell cycle regulator 3624178..3624759 Rhodopseudomonas palustris TIE-1 6411051 YP_001992355.1 CDS Rpal_3378 NC_011004.1 3624746 3624925 D hypothetical protein 3624746..3624925 Rhodopseudomonas palustris TIE-1 6411052 YP_001992356.1 CDS Rpal_3379 NC_011004.1 3624922 3625134 D KEGG: bbr:BB1671 phage-related hypothetical protein; phage-like protein 3624922..3625134 Rhodopseudomonas palustris TIE-1 6411053 YP_001992357.1 CDS Rpal_3380 NC_011004.1 3625131 3625370 D KEGG: rsq:Rsph17025_2113 hypothetical protein; hypothetical protein 3625131..3625370 Rhodopseudomonas palustris TIE-1 6411054 YP_001992358.1 CDS Rpal_3381 NC_011004.1 3625367 3625762 D KEGG: nha:Nham_1609 hypothetical protein; hypothetical protein 3625367..3625762 Rhodopseudomonas palustris TIE-1 6411055 YP_001992359.1 CDS Rpal_3382 NC_011004.1 3625869 3626783 D PFAM: protein of unknown function DUF847; KEGG: mlo:mlr8035 hypothetical protein; hypothetical protein 3625869..3626783 Rhodopseudomonas palustris TIE-1 6411056 YP_001992360.1 CDS Rpal_3383 NC_011004.1 3626780 3627328 D KEGG: nha:Nham_3316 hypothetical protein; hypothetical protein 3626780..3627328 Rhodopseudomonas palustris TIE-1 6411057 YP_001992361.1 CDS Rpal_3384 NC_011004.1 3627276 3627518 D hypothetical protein 3627276..3627518 Rhodopseudomonas palustris TIE-1 6411058 YP_001992362.1 CDS Rpal_3385 NC_011004.1 3627521 3627901 D KEGG: azc:AZC_2139 hypothetical protein; hypothetical protein 3627521..3627901 Rhodopseudomonas palustris TIE-1 6411059 YP_001992363.1 CDS Rpal_3386 NC_011004.1 3627898 3628194 D KEGG: azc:AZC_2140 hypothetical protein; hypothetical protein 3627898..3628194 Rhodopseudomonas palustris TIE-1 6411060 YP_001992364.1 CDS Rpal_3387 NC_011004.1 3628199 3628819 D KEGG: azc:AZC_2141 Mu-like prophage FluMu protein GP27; Mu-like prophage FluMu protein GP27 3628199..3628819 Rhodopseudomonas palustris TIE-1 6411061 YP_001992365.1 CDS Rpal_3388 NC_011004.1 3628816 3629028 D hypothetical protein 3628816..3629028 Rhodopseudomonas palustris TIE-1 6411062 YP_001992366.1 CDS Rpal_3389 NC_011004.1 3629051 3629548 D KEGG: nwi:Nwi_1551 hypothetical protein; hypothetical protein 3629051..3629548 Rhodopseudomonas palustris TIE-1 6411063 YP_001992367.1 CDS Rpal_3390 NC_011004.1 3629545 3629889 D hypothetical protein 3629545..3629889 Rhodopseudomonas palustris TIE-1 6411064 YP_001992368.1 CDS Rpal_3391 NC_011004.1 3629886 3631520 D KEGG: azc:AZC_2142 Mu-like prophage FluMu protein GP28; Mu-like prophage FluMu protein GP28 3629886..3631520 Rhodopseudomonas palustris TIE-1 6411065 YP_001992369.1 CDS Rpal_3392 NC_011004.1 3631517 3631744 D hypothetical protein 3631517..3631744 Rhodopseudomonas palustris TIE-1 6411066 YP_001992370.1 CDS Rpal_3393 NC_011004.1 3631744 3633375 D PFAM: protein of unknown function DUF935; KEGG: rsq:Rsph17025_2101 protein of unknown function DUF935; hypothetical protein 3631744..3633375 Rhodopseudomonas palustris TIE-1 6411067 YP_001992371.1 CDS Rpal_3394 NC_011004.1 3633368 3634132 D TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; KEGG: hdu:HD1557 bacteriophage Mu GP30-like protein; phage head morphogenesis protein 3633368..3634132 Rhodopseudomonas palustris TIE-1 6411068 YP_001992372.1 CDS Rpal_3395 NC_011004.1 3634966 3635310 R PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: cvi:CV_0893 probable 5-carboxymethyl-2-hydroxymuconate D-isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase complement(3634966..3635310) Rhodopseudomonas palustris TIE-1 6411069 YP_001992373.1 CDS Rpal_3396 NC_011004.1 3635504 3636349 D KEGG: bja:bll3359 hypothetical protein; hypothetical protein 3635504..3636349 Rhodopseudomonas palustris TIE-1 6411070 YP_001992374.1 CDS Rpal_3397 NC_011004.1 3636475 3637014 D PFAM: GCN5-related N-acetyltransferase; KEGG: bay:RBAM_024110 YrkN; N-acetyltransferase GCN5 3636475..3637014 Rhodopseudomonas palustris TIE-1 6411071 YP_001992375.1 CDS Rpal_3398 NC_011004.1 3637076 3638056 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ajs:Ajs_1159 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase zinc-binding domain-containing protein 3637076..3638056 Rhodopseudomonas palustris TIE-1 6411072 YP_001992376.1 CDS Rpal_3399 NC_011004.1 3638191 3638670 R KEGG: bbt:BBta_3325 hypothetical protein; hypothetical protein complement(3638191..3638670) Rhodopseudomonas palustris TIE-1 6411073 YP_001992377.1 CDS Rpal_3400 NC_011004.1 3638804 3639100 R KEGG: bja:bll8056 hypothetical protein; hypothetical protein complement(3638804..3639100) Rhodopseudomonas palustris TIE-1 6411074 YP_001992378.1 CDS Rpal_3401 NC_011004.1 3639425 3639997 R KEGG: bra:BRADO3437 hypothetical protein; hypothetical protein complement(3639425..3639997) Rhodopseudomonas palustris TIE-1 6411075 YP_001992379.1 CDS Rpal_3402 NC_011004.1 3640139 3640792 R PFAM: protein of unknown function UPF0126; KEGG: nmu:Nmul_A0854 hypothetical protein; hypothetical protein complement(3640139..3640792) Rhodopseudomonas palustris TIE-1 6411076 YP_001992380.1 CDS Rpal_3403 NC_011004.1 3640925 3641803 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV2178 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3640925..3641803) Rhodopseudomonas palustris TIE-1 6411077 YP_001992381.1 CDS Rpal_3404 NC_011004.1 3641912 3643483 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: azc:AZC_1309 NADH dehydrogenase; NADH/ubiquinone/plastoquinone 3641912..3643483 Rhodopseudomonas palustris TIE-1 6411078 YP_001992382.1 CDS Rpal_3405 NC_011004.1 3643505 3645931 D KEGG: azc:AZC_1310 hypothetical protein; hypothetical protein 3643505..3645931 Rhodopseudomonas palustris TIE-1 6411079 YP_001992383.1 CDS Rpal_3406 NC_011004.1 3646117 3646377 D KEGG: bja:bsr6783 hypothetical protein; hypothetical protein 3646117..3646377 Rhodopseudomonas palustris TIE-1 6411080 YP_001992384.1 CDS Rpal_3407 NC_011004.1 3646381 3647304 D TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: bja:blr6784 dihydrodipicolinate synthase; dihydrodipicolinate synthase 3646381..3647304 Rhodopseudomonas palustris TIE-1 6411081 YP_001992385.1 CDS Rpal_3408 NC_011004.1 3647336 3647782 R PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: pla:Plav_0190 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN complement(3647336..3647782) Rhodopseudomonas palustris TIE-1 6411082 YP_001992386.1 CDS Rpal_3409 NC_011004.1 3647806 3648489 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:bll6775 two-component response regulator; winged helix family two component transcriptional regulator complement(3647806..3648489) Rhodopseudomonas palustris TIE-1 6411083 YP_001992387.1 CDS Rpal_3410 NC_011004.1 3648495 3651218 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: bbt:BBta_6335 sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation; osmosensitive K+ channel signal transduction histidine kinase complement(3648495..3651218) Rhodopseudomonas palustris TIE-1 6411084 YP_001992388.1 CDS Rpal_3411 NC_011004.1 3651264 3651869 R one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(3651264..3651869) Rhodopseudomonas palustris TIE-1 6411085 YP_001992389.1 CDS Rpal_3412 NC_011004.1 3651882 3654002 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(3651882..3654002) Rhodopseudomonas palustris TIE-1 6411086 YP_001992390.1 CDS Rpal_3413 NC_011004.1 3654021 3655724 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(3654021..3655724) Rhodopseudomonas palustris TIE-1 6411087 YP_001992391.1 CDS Rpal_3414 NC_011004.1 3655764 3655883 R TIGRFAM: K+-transporting ATPase, F subunit; PFAM: K+transporting ATPase F subunit; KEGG: bra:BRADO5831 conserved hypothetical protein; potassium-transporting ATPase, KdpF subunit; K+-transporting ATPase subunit F complement(3655764..3655883) Rhodopseudomonas palustris TIE-1 6411088 YP_001992392.1 CDS Rpal_3415 NC_011004.1 3656655 3657215 D hypothetical protein 3656655..3657215 Rhodopseudomonas palustris TIE-1 6411089 YP_001992393.1 CDS Rpal_3416 NC_011004.1 3657253 3657963 D hypothetical protein 3657253..3657963 Rhodopseudomonas palustris TIE-1 6411090 YP_001992394.1 CDS Rpal_3417 NC_011004.1 3657953 3659857 R PFAM: K potassium transporter; KEGG: bra:BRADO4684 low affinity potassium transporter (Kup family); K potassium transporter complement(3657953..3659857) Rhodopseudomonas palustris TIE-1 6411091 YP_001992395.1 CDS Rpal_3418 NC_011004.1 3660363 3660518 D PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1407 antenna complex, alpha/beta subunit; antenna complex alpha/beta subunit 3660363..3660518 Rhodopseudomonas palustris TIE-1 6411092 YP_001992396.1 CDS Rpal_3419 NC_011004.1 3660531 3660728 D PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1408 antenna complex, alpha/beta subunit; antenna complex alpha/beta subunit 3660531..3660728 Rhodopseudomonas palustris TIE-1 6411093 YP_001992397.1 CDS Rpal_3420 NC_011004.1 3661250 3661888 R KEGG: nve:NEMVE_v1g94016 predicted protein Pfam: Extensin_2 PROSITE: LEU_RICH PRO_RICH; hypothetical protein complement(3661250..3661888) Rhodopseudomonas palustris TIE-1 6411094 YP_001992398.1 CDS Rpal_3421 NC_011004.1 3662039 3662218 R PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1408 antenna complex, alpha/beta subunit; antenna complex alpha/beta subunit complement(3662039..3662218) Rhodopseudomonas palustris TIE-1 6411095 YP_001992399.1 CDS Rpal_3422 NC_011004.1 3662231 3662386 R PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1407 antenna complex, alpha/beta subunit; antenna complex alpha/beta subunit complement(3662231..3662386) Rhodopseudomonas palustris TIE-1 6411096 YP_001992400.1 CDS Rpal_3423 NC_011004.1 3662806 3663513 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bbt:BBta_3079 two-component transcriptional regulator, LuxR family; LuxR family transcriptional regulator 3662806..3663513 Rhodopseudomonas palustris TIE-1 6411097 YP_001992401.1 CDS Rpal_3424 NC_011004.1 3663737 3666013 D PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: ava:Ava_1003 multi-sensor signal transduction histidine kinase; GAF sensor signal transduction histidine kinase 3663737..3666013 Rhodopseudomonas palustris TIE-1 6411098 YP_001992402.1 CDS Rpal_3425 NC_011004.1 3666017 3668344 D PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: ana:all2899 phytochrome-like protein, two-component sensor; GAF sensor signal transduction histidine kinase 3666017..3668344 Rhodopseudomonas palustris TIE-1 6411099 YP_001992403.1 CDS Rpal_3426 NC_011004.1 3668345 3668809 D PFAM: response regulator receiver; KEGG: amr:AM1_1726 response regulator; response regulator receiver protein 3668345..3668809 Rhodopseudomonas palustris TIE-1 6411100 YP_001992404.1 CDS Rpal_3427 NC_011004.1 3668806 3669942 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: bbt:BBta_3080 bacteriophytochrome; response regulator receiver sensor signal transduction histidine kinase 3668806..3669942 Rhodopseudomonas palustris TIE-1 6411101 YP_001992405.1 CDS Rpal_3428 NC_011004.1 3670049 3673279 R TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pla:Plav_0714 transporter hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(3670049..3673279) Rhodopseudomonas palustris TIE-1 6411102 YP_001992406.1 CDS Rpal_3429 NC_011004.1 3673409 3674608 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aav:Aave_1362 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit complement(3673409..3674608) Rhodopseudomonas palustris TIE-1 6411103 YP_001992407.1 CDS Rpal_3430 NC_011004.1 3674806 3675393 D PFAM: regulatory protein TetR; KEGG: afw:Anae109_3254 transcriptional regulator, TetR family; TetR family transcriptional regulator 3674806..3675393 Rhodopseudomonas palustris TIE-1 6411104 YP_001992408.1 CDS Rpal_3432 NC_011004.1 3676823 3677809 D PFAM: aldo/keto reductase; KEGG: azc:AZC_4153 aldo/keto reductase; aldo/keto reductase 3676823..3677809 Rhodopseudomonas palustris TIE-1 6411106 YP_001992409.1 CDS Rpal_3433 NC_011004.1 3677831 3678229 R KEGG: bja:bll5535 hypothetical protein; hypothetical protein complement(3677831..3678229) Rhodopseudomonas palustris TIE-1 6411107 YP_001992410.1 CDS Rpal_3434 NC_011004.1 3678468 3678704 D KEGG: bja:bsr4396 hypothetical protein; hypothetical protein 3678468..3678704 Rhodopseudomonas palustris TIE-1 6411108 YP_001992411.1 CDS Rpal_3435 NC_011004.1 3678750 3679400 D PFAM: Abortive infection protein; KEGG: ava:Ava_C0052 abortive infection protein; Abortive infection protein 3678750..3679400 Rhodopseudomonas palustris TIE-1 6411109 YP_001992412.1 CDS Rpal_3436 NC_011004.1 3679410 3681272 R PFAM: K potassium transporter; KEGG: dar:Daro_1184 K+ potassium transporter; K potassium transporter complement(3679410..3681272) Rhodopseudomonas palustris TIE-1 6411110 YP_001992413.1 CDS Rpal_3437 NC_011004.1 3681533 3682369 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: bja:blr4172 hypothetical protein; Sel1 domain-containing protein repeat-containing protein complement(3681533..3682369) Rhodopseudomonas palustris TIE-1 6411111 YP_001992414.1 CDS Rpal_3438 NC_011004.1 3682670 3682843 D PFAM: protein of unknown function DUF1328; KEGG: bja:bsl5717 hypothetical protein; hypothetical protein 3682670..3682843 Rhodopseudomonas palustris TIE-1 6411112 YP_001992415.1 CDS Rpal_3439 NC_011004.1 3683019 3683315 D KEGG: nwi:Nwi_1581 hypothetical protein; hypothetical protein 3683019..3683315 Rhodopseudomonas palustris TIE-1 6411113 YP_001992416.1 CDS Rpal_3440 NC_011004.1 3683416 3684039 R PFAM: GCN5-related N-acetyltransferase; KEGG: bra:BRADO3385 acetyltransferase (GNAT) family; N-acetyltransferase GCN5 complement(3683416..3684039) Rhodopseudomonas palustris TIE-1 6411114 YP_001992417.1 CDS Rpal_3441 NC_011004.1 3684294 3684692 R PFAM: thioesterase superfamily protein; KEGG: bra:BRADO3384 conserved hypothetical protein; phenylacetic acid degradation-related protein; thioesterase superfamily protein complement(3684294..3684692) Rhodopseudomonas palustris TIE-1 6411115 YP_001992418.1 CDS Rpal_3442 NC_011004.1 3684840 3686120 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase complement(3684840..3686120) Rhodopseudomonas palustris TIE-1 6411116 YP_001992419.1 CDS Rpal_3443 NC_011004.1 3686253 3686516 D KEGG: bra:BRADO3381 hypothetical protein; hypothetical protein 3686253..3686516 Rhodopseudomonas palustris TIE-1 6411117 YP_001992420.1 CDS Rpal_3444 NC_011004.1 3686545 3686940 R hypothetical protein complement(3686545..3686940) Rhodopseudomonas palustris TIE-1 6411118 YP_001992421.1 CDS Rpal_3445 NC_011004.1 3687073 3687321 R hypothetical protein complement(3687073..3687321) Rhodopseudomonas palustris TIE-1 6411119 YP_001992422.1 CDS Rpal_3446 NC_011004.1 3687777 3688037 D hypothetical protein 3687777..3688037 Rhodopseudomonas palustris TIE-1 6411120 YP_001992423.1 CDS Rpal_3447 NC_011004.1 3688200 3688748 R PFAM: CreA family protein; KEGG: nha:Nham_2105 CreA; CreA family protein complement(3688200..3688748) Rhodopseudomonas palustris TIE-1 6411121 YP_001992424.1 CDS Rpal_3448 NC_011004.1 3688960 3690573 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:bll4150 hypothetical protein; hypothetical protein 3688960..3690573 Rhodopseudomonas palustris TIE-1 6411122 YP_001992425.1 CDS Rpal_3449 NC_011004.1 3690727 3691665 D PFAM: polysaccharide deacetylase; KEGG: nha:Nham_2107 polysaccharide deacetylase; polysaccharide deacetylase 3690727..3691665 Rhodopseudomonas palustris TIE-1 6411123 YP_001992426.1 CDS Rpal_3450 NC_011004.1 3691703 3692266 D KEGG: nha:Nham_2108 hypothetical protein; hypothetical protein 3691703..3692266 Rhodopseudomonas palustris TIE-1 6411124 YP_001992427.1 CDS Rpal_3451 NC_011004.1 3692274 3692711 R PFAM: DoxX family protein; KEGG: nha:Nham_2109 DoxX; DoxX family protein complement(3692274..3692711) Rhodopseudomonas palustris TIE-1 6411125 YP_001992428.1 CDS Rpal_3452 NC_011004.1 3692817 3695126 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(3692817..3695126) Rhodopseudomonas palustris TIE-1 6411126 YP_001992429.1 CDS aspS NC_011004.1 3695172 3696947 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(3695172..3696947) Rhodopseudomonas palustris TIE-1 6411127 YP_001992430.1 CDS Rpal_3454 NC_011004.1 3697207 3698685 D PFAM: protein of unknown function UPF0061; KEGG: bra:BRADO3358 hypothetical protein; hypothetical protein 3697207..3698685 Rhodopseudomonas palustris TIE-1 6411128 YP_001992431.1 CDS Rpal_3455 NC_011004.1 3698789 3699967 D TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: bra:BRADO3356 ribonuclease D (RNase D); ribonuclease D 3698789..3699967 Rhodopseudomonas palustris TIE-1 6411129 YP_001992432.1 CDS Rpal_3456 NC_011004.1 3699964 3700887 D PFAM: protein of unknown function UPF0187; KEGG: xau:Xaut_4544 protein of unknown function UPF0187; hypothetical protein 3699964..3700887 Rhodopseudomonas palustris TIE-1 6411130 YP_001992433.1 CDS Rpal_3457 NC_011004.1 3700909 3702414 R PFAM: Ppx/GppA phosphatase; KEGG: bja:bll4121 hypothetical protein; Ppx/GppA phosphatase complement(3700909..3702414) Rhodopseudomonas palustris TIE-1 6411131 YP_001992434.1 CDS Rpal_3458 NC_011004.1 3702427 3704637 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(3702427..3704637) Rhodopseudomonas palustris TIE-1 6411132 YP_001992435.1 CDS Rpal_3459 NC_011004.1 3704788 3705465 R KEGG: bja:bll4123 hypothetical protein; hypothetical protein complement(3704788..3705465) Rhodopseudomonas palustris TIE-1 6411133 YP_001992436.1 CDS Rpal_3460 NC_011004.1 3705508 3706137 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: nha:Nham_2117 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase complement(3705508..3706137) Rhodopseudomonas palustris TIE-1 6411134 YP_001992437.1 CDS Rpal_3461 NC_011004.1 3706320 3707393 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3706320..3707393 Rhodopseudomonas palustris TIE-1 6411135 YP_001992438.1 CDS Rpal_3462 NC_011004.1 3707402 3708055 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: bra:BRADO3345 phosphoribosylglycinamide formyltransferase (GarT) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase); phosphoribosylglycinamide formyltransferase 3707402..3708055 Rhodopseudomonas palustris TIE-1 6411136 YP_001992439.1 CDS Rpal_3463 NC_011004.1 3708119 3708322 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: nwi:Nwi_1599 cold-shock protein, DNA-binding; cold-shock DNA-binding domain-containing protein complement(3708119..3708322) Rhodopseudomonas palustris TIE-1 6411137 YP_001992440.1 CDS Rpal_3464 NC_011004.1 3708814 3709587 D KEGG: bja:blr1556 hypothetical protein; Crp/Fnr family transcriptional regulator 3708814..3709587 Rhodopseudomonas palustris TIE-1 6411138 YP_001992441.1 CDS Rpal_3465 NC_011004.1 3709672 3710493 R KEGG: bja:blr4120 hypothetical protein; hypothetical protein complement(3709672..3710493) Rhodopseudomonas palustris TIE-1 6411139 YP_001992442.1 CDS ndk NC_011004.1 3710566 3710988 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(3710566..3710988) Rhodopseudomonas palustris TIE-1 6411140 YP_001992443.1 CDS Rpal_3467 NC_011004.1 3711135 3713012 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2336 ABC transporter; ABC transporter 3711135..3713012 Rhodopseudomonas palustris TIE-1 6411141 YP_001992444.1 CDS Rpal_3468 NC_011004.1 3713016 3713555 R KEGG: nha:Nham_2337 hypothetical protein; hypothetical protein complement(3713016..3713555) Rhodopseudomonas palustris TIE-1 6411142 YP_001992445.1 CDS Rpal_3469 NC_011004.1 3713686 3714138 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(3713686..3714138) Rhodopseudomonas palustris TIE-1 6411143 YP_001992446.1 CDS Rpal_3470 NC_011004.1 3714149 3715651 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(3714149..3715651) Rhodopseudomonas palustris TIE-1 6411144 YP_001992447.1 CDS Rpal_3471 NC_011004.1 3716060 3717226 D PFAM: permease YjgP/YjgQ family protein; KEGG: nha:Nham_2340 permease YjgP/YjgQ; YjgP/YjgQ family permease 3716060..3717226 Rhodopseudomonas palustris TIE-1 6411145 YP_001992448.1 CDS Rpal_3472 NC_011004.1 3717237 3718325 D PFAM: permease YjgP/YjgQ family protein; KEGG: nha:Nham_2341 permease YjgP/YjgQ; YjgP/YjgQ family permease 3717237..3718325 Rhodopseudomonas palustris TIE-1 6411146 YP_001992449.1 CDS Rpal_3473 NC_011004.1 3718325 3720838 D PFAM: organic solvent tolerance protein; KEGG: nha:Nham_2342 organic solvent tolerance protein; organic solvent tolerance protein 3718325..3720838 Rhodopseudomonas palustris TIE-1 6411147 YP_001992450.1 CDS Rpal_3474 NC_011004.1 3720917 3721843 D PFAM: SurA domain; KEGG: nha:Nham_2343 hypothetical protein; SurA domain 3720917..3721843 Rhodopseudomonas palustris TIE-1 6411148 YP_001992451.1 CDS pdxA NC_011004.1 3721904 3722917 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3721904..3722917 Rhodopseudomonas palustris TIE-1 6411149 YP_001992452.1 CDS ksgA NC_011004.1 3722914 3723777 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3722914..3723777 Rhodopseudomonas palustris TIE-1 6411150 YP_001992453.1 CDS Rpal_3477 NC_011004.1 3723794 3724852 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:bll4101 NAD-dependent alcohol dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 3723794..3724852 Rhodopseudomonas palustris TIE-1 6411151 YP_001992454.1 CDS Rpal_3478 NC_011004.1 3725011 3726189 D KEGG: bbt:BBta_2331 exported protein of unknown function; hypothetical protein 3725011..3726189 Rhodopseudomonas palustris TIE-1 6411152 YP_001992455.1 CDS gmk NC_011004.1 3726193 3726855 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(3726193..3726855) Rhodopseudomonas palustris TIE-1 6411153 YP_001992456.1 CDS Rpal_3480 NC_011004.1 3726858 3727745 R PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: bja:blr4087 hypothetical protein; hypothetical protein complement(3726858..3727745) Rhodopseudomonas palustris TIE-1 6411154 YP_001992457.1 CDS Rpal_3481 NC_011004.1 3727848 3729104 R PFAM: aminodeoxychorismate lyase; KEGG: nha:Nham_2350 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(3727848..3729104) Rhodopseudomonas palustris TIE-1 6411155 YP_001992458.1 CDS Rpal_3482 NC_011004.1 3729307 3730572 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II complement(3729307..3730572) Rhodopseudomonas palustris TIE-1 6411156 YP_001992459.1 CDS acpP NC_011004.1 3730669 3730908 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(3730669..3730908) Rhodopseudomonas palustris TIE-1 6411157 YP_001992460.1 CDS Rpal_3484 NC_011004.1 3731213 3731950 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nha:Nham_2353 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase complement(3731213..3731950) Rhodopseudomonas palustris TIE-1 6411158 YP_001992461.1 CDS Rpal_3485 NC_011004.1 3731970 3732929 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: bra:BRADO3310 malonyl CoA-acyl carrier protein transacylase (MCT); malonyl CoA-acyl carrier protein transacylase complement(3731970..3732929) Rhodopseudomonas palustris TIE-1 6411159 YP_001992462.1 CDS Rpal_3486 NC_011004.1 3733195 3734544 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rme:Rmet_3745 diguanylate cyclase (GGDEF domain); diguanylate cyclase 3733195..3734544 Rhodopseudomonas palustris TIE-1 6411160 YP_001992463.1 CDS rpsF NC_011004.1 3734716 3735192 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 3734716..3735192 Rhodopseudomonas palustris TIE-1 6411161 YP_001992464.1 CDS rpsR NC_011004.1 3735198 3735437 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 3735198..3735437 Rhodopseudomonas palustris TIE-1 6411162 YP_001992465.1 CDS Rpal_3489 NC_011004.1 3735565 3736515 D KEGG: nha:Nham_2414 hypothetical protein; hypothetical protein 3735565..3736515 Rhodopseudomonas palustris TIE-1 6411163 YP_001992466.1 CDS rplI NC_011004.1 3736551 3737138 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3736551..3737138 Rhodopseudomonas palustris TIE-1 6411164 YP_001992467.1 CDS Rpal_3491 NC_011004.1 3737303 3738274 R KEGG: bja:blr4073 hypothetical protein; hypothetical protein complement(3737303..3738274) Rhodopseudomonas palustris TIE-1 6411165 YP_001992468.1 CDS Rpal_3492 NC_011004.1 3738533 3739783 D PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: nha:Nham_2287 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 3738533..3739783 Rhodopseudomonas palustris TIE-1 6411166 YP_001992469.1 CDS Rpal_3493 NC_011004.1 3739805 3740002 R KEGG: nha:Nham_2288 hypothetical protein; hypothetical protein complement(3739805..3740002) Rhodopseudomonas palustris TIE-1 6411167 YP_001992470.1 CDS Rpal_3494 NC_011004.1 3740402 3741898 D unwinds double stranded DNA; replicative DNA helicase 3740402..3741898 Rhodopseudomonas palustris TIE-1 6411168 YP_001992471.1 CDS Rpal_3495 NC_011004.1 3741966 3743207 D KEGG: nha:Nham_2290 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 3741966..3743207 Rhodopseudomonas palustris TIE-1 6411169 YP_001992472.1 CDS Rpal_3496 NC_011004.1 3743334 3743591 R KEGG: bbt:BBta_5835 exported protein of unknown function; hypothetical protein complement(3743334..3743591) Rhodopseudomonas palustris TIE-1 6411170 YP_001992473.1 CDS Rpal_3497 NC_011004.1 3743588 3745225 R KEGG: bbt:BBta_1317 membrane protein of unknown function; hypothetical protein complement(3743588..3745225) Rhodopseudomonas palustris TIE-1 6411171 YP_001992474.1 CDS Rpal_3498 NC_011004.1 3745684 3746076 R KEGG: xau:Xaut_1872 hypothetical protein; hypothetical protein complement(3745684..3746076) Rhodopseudomonas palustris TIE-1 6411172 YP_001992475.1 CDS Rpal_3499 NC_011004.1 3746223 3747680 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 3746223..3747680 Rhodopseudomonas palustris TIE-1 6411173 YP_001992476.1 CDS Rpal_3500 NC_011004.1 3747894 3748529 D PFAM: Colicin V production protein; KEGG: bja:bll4061 colicin V production protein; colicin V production protein 3747894..3748529 Rhodopseudomonas palustris TIE-1 6411174 YP_001992477.1 CDS Rpal_3501 NC_011004.1 3748553 3750082 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 3748553..3750082 Rhodopseudomonas palustris TIE-1 6411175 YP_001992478.1 CDS Rpal_3502 NC_011004.1 3750212 3750955 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nwi:Nwi_2019 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3750212..3750955 Rhodopseudomonas palustris TIE-1 6411176 YP_001992479.1 CDS Rpal_3503 NC_011004.1 3751039 3752265 D KEGG: bbt:BBta_3779 ABC transporter substrate-binding protein; ABC transporter substrate-binding protein 3751039..3752265 Rhodopseudomonas palustris TIE-1 6411177 YP_001992480.1 CDS Rpal_3504 NC_011004.1 3752286 3753572 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:blr4054 tetracycline resistance protein; major facilitator superfamily protein complement(3752286..3753572) Rhodopseudomonas palustris TIE-1 6411178 YP_001992481.1 CDS engA NC_011004.1 3753569 3754948 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(3753569..3754948) Rhodopseudomonas palustris TIE-1 6411179 YP_001992482.1 CDS Rpal_3506 NC_011004.1 3755022 3755573 R KEGG: bbt:BBta_3775 exported protein of unknown function; hypothetical protein complement(3755022..3755573) Rhodopseudomonas palustris TIE-1 6411180 YP_001992483.1 CDS Rpal_3507 NC_011004.1 3755619 3756275 R KEGG: bja:blr4050 hypothetical protein; hypothetical protein complement(3755619..3756275) Rhodopseudomonas palustris TIE-1 6411181 YP_001992484.1 CDS panB NC_011004.1 3756438 3757262 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(3756438..3757262) Rhodopseudomonas palustris TIE-1 6411182 YP_001992485.1 CDS Rpal_3509 NC_011004.1 3757265 3757849 R PFAM: NnrUfamily protein; KEGG: bja:blr4047 hypothetical protein; NnrU family protein complement(3757265..3757849) Rhodopseudomonas palustris TIE-1 6411183 YP_001992486.1 CDS Rpal_3510 NC_011004.1 3757993 3758991 D PFAM: conserved hypothetical protein; KEGG: bpt:Bpet0511 secreted protein; hypothetical protein 3757993..3758991 Rhodopseudomonas palustris TIE-1 6411184 YP_001992487.1 CDS Rpal_3511 NC_011004.1 3759040 3759486 R KEGG: dar:Daro_1769 hypothetical protein; hypothetical protein complement(3759040..3759486) Rhodopseudomonas palustris TIE-1 6411185 YP_001992488.1 CDS Rpal_3512 NC_011004.1 3759629 3759895 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: bra:BRADO4482 hypothetical protein; Sel1 domain-containing protein repeat-containing protein complement(3759629..3759895) Rhodopseudomonas palustris TIE-1 6411186 YP_001992489.1 CDS Rpal_3513 NC_011004.1 3760570 3760707 R KEGG: aba:Acid345_0548 hypothetical protein; hypothetical protein complement(3760570..3760707) Rhodopseudomonas palustris TIE-1 6411187 YP_001992490.1 CDS Rpal_3514 NC_011004.1 3761231 3762793 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: nwi:Nwi_1997 aspartyl/glutamyl-tRNA amidotransferase subunit B; glutamyl-tRNA(Gln) amidotransferase subunit B complement(3761231..3762793) Rhodopseudomonas palustris TIE-1 6411188 YP_001992491.1 CDS Rpal_3515 NC_011004.1 3762889 3764274 R PFAM: Patatin; KEGG: nha:Nham_2273 patatin; patatin complement(3762889..3764274) Rhodopseudomonas palustris TIE-1 6411189 YP_001992492.1 CDS Rpal_3516 NC_011004.1 3764416 3765522 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: mlo:mlr9681 sensory transduction histidine kinase; signal transduction histidine kinase complement(3764416..3765522) Rhodopseudomonas palustris TIE-1 6411190 YP_001992493.1 CDS gatA NC_011004.1 3765599 3767077 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(3765599..3767077) Rhodopseudomonas palustris TIE-1 6411191 YP_001992494.1 CDS Rpal_3519 NC_011004.1 3767490 3767774 D KEGG: bte:BTH_II1355 pANL12; hypothetical protein 3767490..3767774 Rhodopseudomonas palustris TIE-1 6411193 YP_001992495.1 CDS Rpal_3520 NC_011004.1 3767778 3767984 R KEGG: nha:Nham_2276 hypothetical protein; hypothetical protein complement(3767778..3767984) Rhodopseudomonas palustris TIE-1 6411194 YP_001992496.1 CDS gatC NC_011004.1 3767996 3768283 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(3767996..3768283) Rhodopseudomonas palustris TIE-1 6411195 YP_001992497.1 CDS Rpal_3522 NC_011004.1 3768370 3769446 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: nha:Nham_2278 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(3768370..3769446) Rhodopseudomonas palustris TIE-1 6411196 YP_001992498.1 CDS Rpal_3523 NC_011004.1 3769605 3770087 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3769605..3770087 Rhodopseudomonas palustris TIE-1 6411197 YP_001992499.1 CDS Rpal_3524 NC_011004.1 3770109 3770495 D PFAM: SEC-C motif domain protein; KEGG: gur:Gura_0182 sec-C motif domain protein; SEC-C motif domain-containing protein 3770109..3770495 Rhodopseudomonas palustris TIE-1 6411198 YP_001992500.1 CDS Rpal_3525 NC_011004.1 3770622 3772271 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:bll5097 acyl CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(3770622..3772271) Rhodopseudomonas palustris TIE-1 6411199 YP_001992501.1 CDS Rpal_3526 NC_011004.1 3772353 3773984 R TIGRFAM: indolepyruvate/phenylpyruvate decarboxylase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bbt:BBta_0512 indole-3-pyruvate decarboxylase; indolepyruvate/phenylpyruvate decarboxylase complement(3772353..3773984) Rhodopseudomonas palustris TIE-1 6411200 YP_001992502.1 CDS pyrB NC_011004.1 3774175 3775128 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 3774175..3775128 Rhodopseudomonas palustris TIE-1 6411201 YP_001992503.1 CDS Rpal_3528 NC_011004.1 3775148 3776458 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 3775148..3776458 Rhodopseudomonas palustris TIE-1 6411202 YP_001992504.1 CDS Rpal_3529 NC_011004.1 3776602 3777213 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 3776602..3777213 Rhodopseudomonas palustris TIE-1 6411203 YP_001992505.1 CDS Rpal_3530 NC_011004.1 3777392 3778171 D KEGG: xla:397773 ribonucleoprotein Pfam: RRM_1 GRP Collagen PROSITE: GLY_RICH RRM; hypothetical protein 3777392..3778171 Rhodopseudomonas palustris TIE-1 6411204 YP_001992506.1 CDS Rpal_3531 NC_011004.1 3778243 3779379 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: bja:blr5104 DNA processing protein; DNA protecting protein DprA 3778243..3779379 Rhodopseudomonas palustris TIE-1 6411205 YP_001992507.1 CDS Rpal_3532 NC_011004.1 3779470 3780882 D PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: mag:amb1065 predicted membrane protein; membrane bound O-acyl transferase MBOAT family protein 3779470..3780882 Rhodopseudomonas palustris TIE-1 6411206 YP_001992508.1 CDS Rpal_3533 NC_011004.1 3780887 3782077 D KEGG: fps:FP1412 probable sugar O-acetyltransferase precursor; hypothetical protein 3780887..3782077 Rhodopseudomonas palustris TIE-1 6411207 YP_001992509.1 CDS Rpal_3534 NC_011004.1 3782339 3782554 R KEGG: nwi:Nwi_1711 hypothetical protein; hypothetical protein complement(3782339..3782554) Rhodopseudomonas palustris TIE-1 6411208 YP_001992510.1 CDS Rpal_3535 NC_011004.1 3782801 3785536 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 3782801..3785536 Rhodopseudomonas palustris TIE-1 6411209 YP_001992511.1 CDS Rpal_3536 NC_011004.1 3785539 3787884 D KEGG: nha:Nham_2438 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; ribonuclease R 3785539..3787884 Rhodopseudomonas palustris TIE-1 6411210 YP_001992512.1 CDS Rpal_3537 NC_011004.1 3787884 3788312 D PFAM: protein of unknown function DUF983; KEGG: bbt:BBta_4735 hypothetical protein; hypothetical protein 3787884..3788312 Rhodopseudomonas palustris TIE-1 6411211 YP_001992513.1 CDS Rpal_3538 NC_011004.1 3788382 3789137 D PFAM: NUDIX hydrolase; KEGG: bbt:BBta_4736 NUDIX hydrolase; NUDIX hydrolase 3788382..3789137 Rhodopseudomonas palustris TIE-1 6411212 YP_001992514.1 CDS Rpal_3539 NC_011004.1 3789172 3790419 R PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A3477 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(3789172..3790419) Rhodopseudomonas palustris TIE-1 6411213 YP_001992515.1 CDS rpmG NC_011004.1 3790718 3790885 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3790718..3790885 Rhodopseudomonas palustris TIE-1 6411214 YP_001992516.1 CDS pleD NC_011004.1 3791121 3792494 R involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; response regulator PleD complement(3791121..3792494) Rhodopseudomonas palustris TIE-1 6411215 YP_001992517.1 CDS Rpal_3542 NC_011004.1 3792505 3792870 R PFAM: response regulator receiver; KEGG: bja:bll5124 two-component response regulator; response regulator receiver protein complement(3792505..3792870) Rhodopseudomonas palustris TIE-1 6411216 YP_001992518.1 CDS Rpal_3543 NC_011004.1 3792996 3793295 D KEGG: bra:BRADO4522 hypothetical protein; hypothetical protein 3792996..3793295 Rhodopseudomonas palustris TIE-1 6411217 YP_001992519.1 CDS Rpal_3544 NC_011004.1 3793292 3794587 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 3793292..3794587 Rhodopseudomonas palustris TIE-1 6411218 YP_001992520.1 CDS Rpal_3545 NC_011004.1 3794712 3795578 R PFAM: Domain of unknown function DUF1849; KEGG: nha:Nham_2446 hypothetical protein; hypothetical protein complement(3794712..3795578) Rhodopseudomonas palustris TIE-1 6411219 YP_001992521.1 CDS Rpal_3546 NC_011004.1 3795849 3796316 D PFAM: Endoribonuclease L-PSP; KEGG: nwi:Nwi_1427 endoribonuclease L-PSP; endoribonuclease L-PSP 3795849..3796316 Rhodopseudomonas palustris TIE-1 6411220 YP_001992522.1 CDS Rpal_3547 NC_011004.1 3796336 3797082 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: bja:blr5133 hypothetical protein; glycerophosphoryl diester phosphodiesterase 3796336..3797082 Rhodopseudomonas palustris TIE-1 6411221 YP_001992523.1 CDS Rpal_3548 NC_011004.1 3797175 3798404 D PFAM: protein of unknown function DUF482; KEGG: bja:blr5134 hypothetical protein; hypothetical protein 3797175..3798404 Rhodopseudomonas palustris TIE-1 6411222 YP_001992524.1 CDS Rpal_3549 NC_011004.1 3798454 3798882 D PFAM: histidine triad (HIT) protein; KEGG: bja:blr5135 hypothetical protein; histidine triad (HIT) protein 3798454..3798882 Rhodopseudomonas palustris TIE-1 6411223 YP_001992525.1 CDS Rpal_3550 NC_011004.1 3798888 3799349 R PFAM: protein of unknown function UPF0066; KEGG: nha:Nham_2452 protein of unknown function UPF0066; hypothetical protein complement(3798888..3799349) Rhodopseudomonas palustris TIE-1 6411224 YP_001992526.1 CDS Rpal_3551 NC_011004.1 3799398 3799742 R KEGG: bbt:BBta_4760 membrane protein of unknown function; hypothetical protein complement(3799398..3799742) Rhodopseudomonas palustris TIE-1 6411225 YP_001992527.1 CDS Rpal_3552 NC_011004.1 3799739 3800482 R PFAM: AzlC family protein; KEGG: bja:bll5138 hypothetical protein; AzlC family protein complement(3799739..3800482) Rhodopseudomonas palustris TIE-1 6411226 YP_001992528.1 CDS Rpal_3553 NC_011004.1 3800635 3800994 D PFAM: type IV pilus assembly PilZ; KEGG: bbt:BBta_7466 hypothetical protein; type IV pilus assembly PilZ 3800635..3800994 Rhodopseudomonas palustris TIE-1 6411227 YP_001992529.1 CDS Rpal_3554 NC_011004.1 3801011 3802042 R PFAM: Sporulation domain protein; lytic transglycosylase; KEGG: bja:bll5139 probable transglycosylase; lytic transglycosylase complement(3801011..3802042) Rhodopseudomonas palustris TIE-1 6411228 YP_001992530.1 CDS Rpal_3555 NC_011004.1 3802754 3804532 D KEGG: aav:Aave_0600 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; hypothetical protein 3802754..3804532 Rhodopseudomonas palustris TIE-1 6411229 YP_001992531.1 CDS Rpal_3556 NC_011004.1 3804607 3806991 R KEGG: bra:BRADO4545 ATP-dependent specificity subunit of ClpA-ClpP serine protease; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA; Clp domain protein; ATPase AAA; ATPase AAA-2 domain protein; SMART: ATPase AAA; ATP-dependent Clp protease ATP-binding protein ClpA complement(3804607..3806991) Rhodopseudomonas palustris TIE-1 6411230 YP_001992532.1 CDS clpS NC_011004.1 3807185 3807532 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(3807185..3807532) Rhodopseudomonas palustris TIE-1 6411231 YP_001992533.1 CDS Rpal_3558 NC_011004.1 3807987 3809354 D KEGG: nha:Nham_2418 hypothetical protein; hypothetical protein 3807987..3809354 Rhodopseudomonas palustris TIE-1 6411232 YP_001992534.1 CDS Rpal_3559 NC_011004.1 3809710 3811467 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: bbt:BBta_4777 D-alanyl-D-alanine carboxypeptidase (peptidase S11)(dd-carboxypeptidase); serine-type D-Ala-D-Ala carboxypeptidase 3809710..3811467 Rhodopseudomonas palustris TIE-1 6411233 YP_001992535.1 CDS Rpal_3560 NC_011004.1 3811795 3812523 R PFAM: heat shock protein DnaJ domain protein; KEGG: bja:bll5157 hypothetical protein; heat shock protein DnaJ domain-containing protein complement(3811795..3812523) Rhodopseudomonas palustris TIE-1 6411234 YP_001992536.1 CDS Rpal_3561 NC_011004.1 3812579 3813319 R KEGG: bja:bll5159 hypothetical protein; hypothetical protein complement(3812579..3813319) Rhodopseudomonas palustris TIE-1 6411235 YP_001992537.1 CDS Rpal_3562 NC_011004.1 3813398 3814225 R KEGG: bra:BRADO4552 conserved hypothetical protein; alpha/beta-hydrolases; hypothetical protein complement(3813398..3814225) Rhodopseudomonas palustris TIE-1 6411236 YP_001992538.1 CDS Rpal_3563 NC_011004.1 3814500 3815423 R PFAM: ATPase MipZ; KEGG: bja:bll5161 hypothetical protein; ATPase MipZ complement(3814500..3815423) Rhodopseudomonas palustris TIE-1 6411237 YP_001992539.1 CDS panC NC_011004.1 3815691 3816542 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3815691..3816542 Rhodopseudomonas palustris TIE-1 6411238 YP_001992540.1 CDS Rpal_3565 NC_011004.1 3816579 3816998 R PFAM: conserved hypothetical protein; KEGG: bja:bll5163 hypothetical protein; hypothetical protein complement(3816579..3816998) Rhodopseudomonas palustris TIE-1 6411239 YP_001992541.1 CDS Rpal_3566 NC_011004.1 3817037 3818077 R KEGG: nha:Nham_2426 hypothetical protein; hypothetical protein complement(3817037..3818077) Rhodopseudomonas palustris TIE-1 6411240 YP_001992542.1 CDS Rpal_3567 NC_011004.1 3818257 3818448 R KEGG: nha:Nham_2427 hypothetical protein; hypothetical protein complement(3818257..3818448) Rhodopseudomonas palustris TIE-1 6411241 YP_001992543.1 CDS Rpal_3568 NC_011004.1 3818661 3819317 R PFAM: glutathione S-transferase domain; KEGG: nha:Nham_2428 glutathione S-transferase-like; glutathione S-transferase domain-containing protein complement(3818661..3819317) Rhodopseudomonas palustris TIE-1 6411242 YP_001992544.1 CDS Rpal_3569 NC_011004.1 3819435 3819719 D KEGG: nha:Nham_2430 hypothetical protein; hypothetical protein 3819435..3819719 Rhodopseudomonas palustris TIE-1 6411243 YP_001992545.1 CDS Rpal_3570 NC_011004.1 3819726 3820520 R PFAM: protein of unknown function DUF218; KEGG: nwi:Nwi_1708 protein of unknown function DUF218; hypothetical protein complement(3819726..3820520) Rhodopseudomonas palustris TIE-1 6411244 YP_001992546.1 CDS Rpal_3571 NC_011004.1 3820595 3821428 R PFAM: aldo/keto reductase; KEGG: bra:BRADO4561 aldo/keto reductase; 2,5-diketo-D-gluconate reductase B (DkgB-like); aldo/keto reductase complement(3820595..3821428) Rhodopseudomonas palustris TIE-1 6411245 YP_001992547.1 CDS Rpal_3572 NC_011004.1 3821483 3821848 R PFAM: helix-turn-helix domain protein; KEGG: bbt:BBta_4790 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(3821483..3821848) Rhodopseudomonas palustris TIE-1 6411246 YP_001992548.1 CDS Rpal_3573 NC_011004.1 3821893 3823314 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: bra:BRADO4563 magnesium transporter MgtE-like (divalent cation transporter Mg2+/Ni2+/Co2+); magnesium transporter complement(3821893..3823314) Rhodopseudomonas palustris TIE-1 6411247 YP_001992549.1 CDS Rpal_3574 NC_011004.1 3823477 3824280 D PFAM: polysaccharide deacetylase; KEGG: nha:Nham_2434 polysaccharide deacetylase; polysaccharide deacetylase 3823477..3824280 Rhodopseudomonas palustris TIE-1 6411248 YP_001992550.1 CDS Rpal_3575 NC_011004.1 3824418 3825737 D PFAM: polysaccharide deacetylase; KEGG: nha:Nham_2435 polysaccharide deacetylase; polysaccharide deacetylase 3824418..3825737 Rhodopseudomonas palustris TIE-1 6411249 YP_001992551.1 CDS Rpal_3576 NC_011004.1 3825823 3826254 D PFAM: conserved hypothetical protein; KEGG: nha:Nham_3790 hypothetical protein; hypothetical protein 3825823..3826254 Rhodopseudomonas palustris TIE-1 6411250 YP_001992552.1 CDS Rpal_3577 NC_011004.1 3826254 3826715 D PFAM: RES domain protein; KEGG: xau:Xaut_5010 RES domain protein; RES domain-containing protein 3826254..3826715 Rhodopseudomonas palustris TIE-1 6411251 YP_001992553.1 CDS Rpal_3578 NC_011004.1 3826988 3827230 R PFAM: surface presentation of antigens (SPOA) protein; KEGG: bja:bsl5256 hypothetical protein; hypothetical protein complement(3826988..3827230) Rhodopseudomonas palustris TIE-1 6411253 YP_001992554.1 CDS lipB NC_011004.1 3827297 3828034 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 3827297..3828034 Rhodopseudomonas palustris TIE-1 6411254 YP_001992555.1 CDS Rpal_3580 NC_011004.1 3828305 3830926 D KEGG: bja:bll6545 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; GAF domain protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 3828305..3830926 Rhodopseudomonas palustris TIE-1 6411255 YP_001992556.1 CDS Rpal_3581 NC_011004.1 3830951 3831382 R PFAM: 4-oxalocrotonate tautomerase; KEGG: bja:bll5259 hypothetical protein; 4-oxalocrotonate tautomerase complement(3830951..3831382) Rhodopseudomonas palustris TIE-1 6411256 YP_001992557.1 CDS Rpal_3582 NC_011004.1 3831488 3832336 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_4894 transcriptional regulator, LysR family; LysR family transcriptional regulator 3831488..3832336 Rhodopseudomonas palustris TIE-1 6411257 YP_001992558.1 CDS Rpal_3583 NC_011004.1 3832355 3832654 R catalyzes the hydrolysis of acylphosphate; acylphosphatase complement(3832355..3832654) Rhodopseudomonas palustris TIE-1 6411258 YP_001992559.1 CDS Rpal_3584 NC_011004.1 3832654 3833520 R KEGG: bja:bll5266 carboxy-phosphonoenolpyruvate mutase; carboxy-phosphonoenolpyruvate mutase complement(3832654..3833520) Rhodopseudomonas palustris TIE-1 6411259 YP_001992560.1 CDS Rpal_3585 NC_011004.1 3833527 3835542 R PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: bja:bll5267 propionyl-coenzyme A carboxylase alpha polypeptide; carbamoyl-phosphate synthase L chain ATP-binding complement(3833527..3835542) Rhodopseudomonas palustris TIE-1 6411260 YP_001992561.1 CDS Rpal_3586 NC_011004.1 3835696 3837546 D PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: bja:blr5306 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase 3835696..3837546 Rhodopseudomonas palustris TIE-1 6411261 YP_001992562.1 CDS Rpal_3587 NC_011004.1 3837583 3838158 R KEGG: nwi:Nwi_1737 hypothetical protein; hypothetical protein complement(3837583..3838158) Rhodopseudomonas palustris TIE-1 6411262 YP_001992563.1 CDS Rpal_3588 NC_011004.1 3838452 3838850 R KEGG: bra:BRADO3234 hypothetical protein; hypothetical protein complement(3838452..3838850) Rhodopseudomonas palustris TIE-1 6411263 YP_001992564.1 CDS Rpal_3589 NC_011004.1 3838969 3840420 D PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: bbt:BBta_4932 DNA photolyase class-1 family protein; deoxyribodipyrimidine photo-lyase 3838969..3840420 Rhodopseudomonas palustris TIE-1 6411264 YP_001992565.1 CDS Rpal_3590 NC_011004.1 3840499 3840840 D KEGG: bja:blr5311 probable histon H1; histone H1 3840499..3840840 Rhodopseudomonas palustris TIE-1 6411265 YP_001992566.1 CDS Rpal_3591 NC_011004.1 3840947 3841822 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:bll5313 hypothetical protein; hypothetical protein complement(3840947..3841822) Rhodopseudomonas palustris TIE-1 6411266 YP_001992567.1 CDS Rpal_3592 NC_011004.1 3841976 3842884 D TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: ret:RHE_CH03501 phenazine biosynthesis protein; phenazine biosynthesis protein PhzF family 3841976..3842884 Rhodopseudomonas palustris TIE-1 6411267 YP_001992568.1 CDS Rpal_3593 NC_011004.1 3842939 3843385 R KEGG: bja:bll5314 hypothetical protein; hypothetical protein complement(3842939..3843385) Rhodopseudomonas palustris TIE-1 6411268 YP_001992569.1 CDS Rpal_3594 NC_011004.1 3844529 3845320 R KEGG: cyb:CYB_2178 hypothetical protein; hypothetical protein complement(3844529..3845320) Rhodopseudomonas palustris TIE-1 6411270 YP_001992570.1 CDS Rpal_3595 NC_011004.1 3845324 3845785 R KEGG: nis:NIS_1397 ABC transporter ATP-binding protein; hypothetical protein complement(3845324..3845785) Rhodopseudomonas palustris TIE-1 6411271 YP_001992571.1 CDS Rpal_3596 NC_011004.1 3848049 3848309 R hypothetical protein complement(3848049..3848309) Rhodopseudomonas palustris TIE-1 6411272 YP_001992572.1 CDS Rpal_3597 NC_011004.1 3848522 3848758 R hypothetical protein complement(3848522..3848758) Rhodopseudomonas palustris TIE-1 6411273 YP_001992573.1 CDS Rpal_3598 NC_011004.1 3849672 3851690 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bra:BRADO6631 methyl-accepting chemotaxis receptor/sensory transducer precursor; methyl-accepting chemotaxis sensory transducer 3849672..3851690 Rhodopseudomonas palustris TIE-1 6411274 YP_001992574.1 CDS Rpal_3599 NC_011004.1 3851855 3852205 D KEGG: nha:Nham_2176 hypothetical protein; hypothetical protein 3851855..3852205 Rhodopseudomonas palustris TIE-1 6411275 YP_001992575.1 CDS Rpal_3600 NC_011004.1 3852237 3854939 R KEGG: bja:bll5328 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(3852237..3854939) Rhodopseudomonas palustris TIE-1 6411276 YP_001992576.1 CDS Rpal_3601 NC_011004.1 3855126 3857300 R TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: bbt:BBta_5502 alcohol dehydrogenase; PQQ-dependent dehydrogenase complement(3855126..3857300) Rhodopseudomonas palustris TIE-1 6411277 YP_001992577.1 CDS Rpal_3602 NC_011004.1 3857454 3858245 R PFAM: NUDIX hydrolase; KEGG: bbt:BBta_5001 hypothetical protein; NUDIX hydrolase complement(3857454..3858245) Rhodopseudomonas palustris TIE-1 6411278 YP_001992578.1 CDS Rpal_3603 NC_011004.1 3858250 3859203 R PFAM: dihydrodipicolinate synthetase; KEGG: bja:bll5331 hypothetical protein; dihydrodipicolinate synthetase complement(3858250..3859203) Rhodopseudomonas palustris TIE-1 6411279 YP_001992579.1 CDS Rpal_3604 NC_011004.1 3859306 3860184 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll5332 probable short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(3859306..3860184) Rhodopseudomonas palustris TIE-1 6411280 YP_001992580.1 CDS Rpal_3605 NC_011004.1 3860330 3861190 R PFAM: MaoC domain protein dehydratase; KEGG: bja:bll5333 dehydrogenase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase complement(3860330..3861190) Rhodopseudomonas palustris TIE-1 6411281 YP_001992581.1 CDS Rpal_3606 NC_011004.1 3861377 3861769 R PFAM: protein of unknown function DUF35; KEGG: bra:BRADO4313 hypothetical protein; hypothetical protein complement(3861377..3861769) Rhodopseudomonas palustris TIE-1 6411282 YP_001992582.1 CDS Rpal_3607 NC_011004.1 3861769 3862917 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(3861769..3862917) Rhodopseudomonas palustris TIE-1 6411283 YP_001992583.1 CDS Rpal_3608 NC_011004.1 3863206 3866691 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(3863206..3866691) Rhodopseudomonas palustris TIE-1 6411284 YP_001992584.1 CDS Rpal_3609 NC_011004.1 3867022 3867423 D KEGG: bja:blr5341 hypothetical protein; hypothetical protein 3867022..3867423 Rhodopseudomonas palustris TIE-1 6411285 YP_001992585.1 CDS Rpal_3610 NC_011004.1 3867668 3867955 D KEGG: bja:bsr5347 hypothetical protein; hypothetical protein 3867668..3867955 Rhodopseudomonas palustris TIE-1 6411286 YP_001992586.1 CDS Rpal_3611 NC_011004.1 3868021 3868830 R PFAM: protein of unknown function DUF1295; KEGG: olu:OSTLU_16639 predicted protein; hypothetical protein complement(3868021..3868830) Rhodopseudomonas palustris TIE-1 6411287 YP_001992587.1 CDS Rpal_3612 NC_011004.1 3868936 3869484 R KEGG: mag:amb3985 hypothetical protein; hypothetical protein complement(3868936..3869484) Rhodopseudomonas palustris TIE-1 6411288 YP_001992588.1 CDS Rpal_3613 NC_011004.1 3869573 3871306 R PFAM: Protein phosphatase 2C-like; Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: bja:bll2800 probable bifunctional serine/threonine kinase and phosphatase; serine/threonine protein kinase complement(3869573..3871306) Rhodopseudomonas palustris TIE-1 6411289 YP_001992589.1 CDS Rpal_3614 NC_011004.1 3871374 3872213 R PFAM: formate/nitrite transporter; KEGG: bja:bll2801 probable potential formate transporter; formate/nitrite transporter complement(3871374..3872213) Rhodopseudomonas palustris TIE-1 6411290 YP_001992590.1 CDS Rpal_3615 NC_011004.1 3872606 3872890 D PFAM: plasmid maintenance system killer; KEGG: azc:AZC_0872 plasmid maintenance system killer protein; plasmid maintenance system killer protein 3872606..3872890 Rhodopseudomonas palustris TIE-1 6411291 YP_001992591.1 CDS Rpal_3616 NC_011004.1 3872903 3873205 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: azc:AZC_4647 plasmid maintenance system antidote protein; XRE family transcriptional regulator 3872903..3873205 Rhodopseudomonas palustris TIE-1 6411292 YP_001992592.1 CDS Rpal_3617 NC_011004.1 3873388 3874245 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: mex:Mext_2384 hypothetical protein; NAD-dependent epimerase/dehydratase complement(3873388..3874245) Rhodopseudomonas palustris TIE-1 6411293 YP_001992593.1 CDS Rpal_3618 NC_011004.1 3874444 3875976 R PFAM: carboxyl transferase; KEGG: bra:BRADO4331 propionyl-CoA carboxylase beta chain; carboxyl transferase complement(3874444..3875976) Rhodopseudomonas palustris TIE-1 6411294 YP_001992594.1 CDS Rpal_3619 NC_011004.1 3876256 3876672 D KEGG: bbt:BBta_5025 hypothetical protein; hypothetical protein 3876256..3876672 Rhodopseudomonas palustris TIE-1 6411295 YP_001992595.1 CDS Rpal_3620 NC_011004.1 3876674 3876949 R KEGG: nha:Nham_1578 type III secretion protein; type III secretion protein complement(3876674..3876949) Rhodopseudomonas palustris TIE-1 6411296 YP_001992596.1 CDS Rpal_3621 NC_011004.1 3876946 3878748 R KEGG: bbt:BBta_5030 exported protein of unknown function; hypothetical protein complement(3876946..3878748) Rhodopseudomonas palustris TIE-1 6411297 YP_001992597.1 CDS Rpal_3622 NC_011004.1 3878818 3879603 R PFAM: ATP12 ATPase; KEGG: bja:bll5364 hypothetical protein; ATP12 ATPase complement(3878818..3879603) Rhodopseudomonas palustris TIE-1 6411298 YP_001992598.1 CDS Rpal_3623 NC_011004.1 3879618 3879947 R KEGG: rrs:RoseRS_2769 FHA domain containing protein; hypothetical protein complement(3879618..3879947) Rhodopseudomonas palustris TIE-1 6411299 YP_001992599.1 CDS Rpal_3624 NC_011004.1 3880015 3881382 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bra:BRADO4632 ribosomal large subunit pseudouridine synthase RluC-like (23S RNA pseudouridylate synthase) (RNA-uridine isomerase); RluA family pseudouridine synthase complement(3880015..3881382) Rhodopseudomonas palustris TIE-1 6411300 YP_001992600.1 CDS Rpal_3625 NC_011004.1 3881614 3882195 R KEGG: azc:AZC_4195 hypothetical protein; hypothetical protein complement(3881614..3882195) Rhodopseudomonas palustris TIE-1 6411301 YP_001992601.1 CDS Rpal_3626 NC_011004.1 3882685 3883590 R PFAM: dienelactone hydrolase; KEGG: mag:amb1216 carboxymethylenebutenolidase; dienelactone hydrolase complement(3882685..3883590) Rhodopseudomonas palustris TIE-1 6411302 YP_001992602.1 CDS Rpal_3627 NC_011004.1 3883772 3887179 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:bll8142 hypothetical protein; hypothetical protein 3883772..3887179 Rhodopseudomonas palustris TIE-1 6411303 YP_001992603.1 CDS Rpal_3628 NC_011004.1 3887207 3887653 D hypothetical protein 3887207..3887653 Rhodopseudomonas palustris TIE-1 6411304 YP_001992604.1 CDS Rpal_3629 NC_011004.1 3887663 3887869 D hypothetical protein 3887663..3887869 Rhodopseudomonas palustris TIE-1 6411305 YP_001992605.1 CDS Rpal_3630 NC_011004.1 3887869 3888636 D hypothetical protein 3887869..3888636 Rhodopseudomonas palustris TIE-1 6411306 YP_001992606.1 CDS Rpal_3631 NC_011004.1 3888774 3889451 D PFAM: nitroreductase; KEGG: bbt:BBta_0024 hypothetical protein; nitroreductase 3888774..3889451 Rhodopseudomonas palustris TIE-1 6411307 YP_001992607.1 CDS Rpal_3632 NC_011004.1 3889656 3891716 D KEGG: mrd:Mrad2831_4432 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 3889656..3891716 Rhodopseudomonas palustris TIE-1 6411308 YP_001992608.1 CDS Rpal_3633 NC_011004.1 3891845 3893053 R PFAM: extracellular ligand-binding receptor; KEGG: bja:blr2988 hypothetical protein; extracellular ligand-binding receptor complement(3891845..3893053) Rhodopseudomonas palustris TIE-1 6411309 YP_001992609.1 CDS Rpal_3634 NC_011004.1 3893159 3893578 R PFAM: protein of unknown function UPF0047; KEGG: bra:BRADO6457 hypothetical protein; hypothetical protein complement(3893159..3893578) Rhodopseudomonas palustris TIE-1 6411310 YP_001992610.1 CDS Rpal_3635 NC_011004.1 3893648 3895618 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bbt:BBta_1127 signaling membrane protein containing multidomains GGDEF/EAL; diguanylate cyclase/phosphodiesterase complement(3893648..3895618) Rhodopseudomonas palustris TIE-1 6411311 YP_001992611.1 CDS Rpal_3636 NC_011004.1 3895919 3897250 R PFAM: ATPase AAA; ATPase AAA; SMART: ATPase AAA; KEGG: bja:bll5367 recombination factor protein RarA; recombination factor protein RarA complement(3895919..3897250) Rhodopseudomonas palustris TIE-1 6411312 YP_001992612.1 CDS Rpal_3637 NC_011004.1 3897476 3898867 R KEGG: nha:Nham_1572 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(3897476..3898867) Rhodopseudomonas palustris TIE-1 6411313 YP_001992613.1 CDS Rpal_3638 NC_011004.1 3898950 3899339 R PFAM: helix-turn-helix HxlR type; KEGG: bja:bll5370 transcriptional regulatory protein; HxlR family transcriptional regulator complement(3898950..3899339) Rhodopseudomonas palustris TIE-1 6411314 YP_001992614.1 CDS Rpal_3639 NC_011004.1 3899457 3900473 D TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr5371 zinc-binding dehydrogenase; zinc-binding alcohol dehydrogenase 3899457..3900473 Rhodopseudomonas palustris TIE-1 6411315 YP_001992615.1 CDS Rpal_3640 NC_011004.1 3900696 3901490 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll5373 probable short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(3900696..3901490) Rhodopseudomonas palustris TIE-1 6411316 YP_001992616.1 CDS rplQ NC_011004.1 3901775 3902194 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(3901775..3902194) Rhodopseudomonas palustris TIE-1 6411317 YP_001992617.1 CDS Rpal_3642 NC_011004.1 3902350 3903369 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(3902350..3903369) Rhodopseudomonas palustris TIE-1 6411318 YP_001992618.1 CDS Rpal_3643 NC_011004.1 3903503 3903892 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(3903503..3903892) Rhodopseudomonas palustris TIE-1 6411319 YP_001992619.1 CDS rpsM NC_011004.1 3904023 3904391 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(3904023..3904391) Rhodopseudomonas palustris TIE-1 6411320 YP_001992620.1 CDS Rpal_3645 NC_011004.1 3904406 3904501 R hypothetical protein complement(3904406..3904501) Rhodopseudomonas palustris TIE-1 6411321 YP_001992621.1 CDS Rpal_3646 NC_011004.1 3904576 3905679 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(3904576..3905679) Rhodopseudomonas palustris TIE-1 6411322 YP_001992622.1 CDS secY NC_011004.1 3905676 3907007 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(3905676..3907007) Rhodopseudomonas palustris TIE-1 6411323 YP_001992623.1 CDS rplO NC_011004.1 3907160 3907645 R late assembly protein; 50S ribosomal protein L15 complement(3907160..3907645) Rhodopseudomonas palustris TIE-1 6411324 YP_001992624.1 CDS rpmD NC_011004.1 3907658 3907852 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(3907658..3907852) Rhodopseudomonas palustris TIE-1 6411325 YP_001992625.1 CDS rpsE NC_011004.1 3907911 3908486 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(3907911..3908486) Rhodopseudomonas palustris TIE-1 6411326 YP_001992626.1 CDS rplR NC_011004.1 3908547 3908909 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(3908547..3908909) Rhodopseudomonas palustris TIE-1 6411327 YP_001992627.1 CDS rplF NC_011004.1 3908921 3909454 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(3908921..3909454) Rhodopseudomonas palustris TIE-1 6411328 YP_001992628.1 CDS rpsH NC_011004.1 3909567 3909965 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(3909567..3909965) Rhodopseudomonas palustris TIE-1 6411329 YP_001992629.1 CDS rpsN NC_011004.1 3909981 3910286 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(3909981..3910286) Rhodopseudomonas palustris TIE-1 6411330 YP_001992630.1 CDS rplE NC_011004.1 3910330 3910887 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(3910330..3910887) Rhodopseudomonas palustris TIE-1 6411331 YP_001992631.1 CDS rplX NC_011004.1 3910880 3911194 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(3910880..3911194) Rhodopseudomonas palustris TIE-1 6411332 YP_001992632.1 CDS rplN NC_011004.1 3911194 3911562 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(3911194..3911562) Rhodopseudomonas palustris TIE-1 6411333 YP_001992633.1 CDS rpsQ NC_011004.1 3911626 3911874 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(3911626..3911874) Rhodopseudomonas palustris TIE-1 6411334 YP_001992634.1 CDS Rpal_3659 NC_011004.1 3911887 3912096 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(3911887..3912096) Rhodopseudomonas palustris TIE-1 6411335 YP_001992635.1 CDS rplP NC_011004.1 3912102 3912515 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(3912102..3912515) Rhodopseudomonas palustris TIE-1 6411336 YP_001992636.1 CDS rpsC NC_011004.1 3912548 3913255 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(3912548..3913255) Rhodopseudomonas palustris TIE-1 6411337 YP_001992637.1 CDS rplV NC_011004.1 3913278 3913661 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(3913278..3913661) Rhodopseudomonas palustris TIE-1 6411338 YP_001992638.1 CDS rpsS NC_011004.1 3913672 3913950 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(3913672..3913950) Rhodopseudomonas palustris TIE-1 6411339 YP_001992639.1 CDS rplB NC_011004.1 3913962 3914798 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(3913962..3914798) Rhodopseudomonas palustris TIE-1 6411340 YP_001992640.1 CDS rplW NC_011004.1 3914812 3915111 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(3914812..3915111) Rhodopseudomonas palustris TIE-1 6411341 YP_001992641.1 CDS rplD NC_011004.1 3915108 3915728 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(3915108..3915728) Rhodopseudomonas palustris TIE-1 6411342 YP_001992642.1 CDS rplC NC_011004.1 3915730 3916455 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(3915730..3916455) Rhodopseudomonas palustris TIE-1 6411343 YP_001992643.1 CDS rpsJ NC_011004.1 3916506 3916814 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(3916506..3916814) Rhodopseudomonas palustris TIE-1 6411344 YP_001992644.1 CDS Rpal_3669 NC_011004.1 3916902 3918092 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(3916902..3918092) Rhodopseudomonas palustris TIE-1 6411345 YP_001992645.1 CDS Rpal_3670 NC_011004.1 3918131 3920203 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3918131..3920203) Rhodopseudomonas palustris TIE-1 6411346 YP_001992646.1 CDS Rpal_3671 NC_011004.1 3920234 3920704 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(3920234..3920704) Rhodopseudomonas palustris TIE-1 6411347 YP_001992647.1 CDS rpsL NC_011004.1 3920720 3921091 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(3920720..3921091) Rhodopseudomonas palustris TIE-1 6411348 YP_001992648.1 CDS Rpal_3673 NC_011004.1 3921956 3922939 D KEGG: bja:blr2658 hypothetical protein; hypothetical protein 3921956..3922939 Rhodopseudomonas palustris TIE-1 6411349 YP_001992649.1 CDS Rpal_3674 NC_011004.1 3923038 3923859 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: scl:sce7710 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3923038..3923859) Rhodopseudomonas palustris TIE-1 6411350 YP_001992650.1 CDS Rpal_3675 NC_011004.1 3923995 3924690 D PFAM: O-methyltransferase family 3; KEGG: scl:sce1113 hypothetical protein; O-methyltransferase family protein 3923995..3924690 Rhodopseudomonas palustris TIE-1 6411351 YP_001992651.1 CDS Rpal_3676 NC_011004.1 3925303 3926505 D PFAM: HNH endonuclease; KEGG: rfr:Rfer_1191 HNH endonuclease; HNH endonuclease 3925303..3926505 Rhodopseudomonas palustris TIE-1 6411352 YP_001992652.1 CDS Rpal_3677 NC_011004.1 3926656 3927534 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_0486 LysR substrate-binding; LysR family transcriptional regulator complement(3926656..3927534) Rhodopseudomonas palustris TIE-1 6411353 YP_001992653.1 CDS Rpal_3678 NC_011004.1 3927634 3928851 D PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: mex:Mext_0485 protein of unknown function DUF1228; hypothetical protein 3927634..3928851 Rhodopseudomonas palustris TIE-1 6411354 YP_001992654.1 CDS Rpal_3679 NC_011004.1 3928846 3930975 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: oan:Oant_3208 heavy metal translocating P-type ATPase; ATPase P complement(3928846..3930975) Rhodopseudomonas palustris TIE-1 6411355 YP_001992655.1 CDS Rpal_3680 NC_011004.1 3931041 3931442 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: nha:Nham_3726 transcriptional regulator, MerR family; MerR family transcriptional regulator 3931041..3931442 Rhodopseudomonas palustris TIE-1 6411356 YP_001992656.1 CDS Rpal_3681 NC_011004.1 3931485 3932693 R PFAM: major facilitator superfamily MFS_1; KEGG: smd:Smed_3859 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(3931485..3932693) Rhodopseudomonas palustris TIE-1 6411357 YP_001992657.1 CDS Rpal_3682 NC_011004.1 3932909 3933337 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: smd:Smed_5280 3-demethylubiquinone-9 3-methyltransferase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3932909..3933337) Rhodopseudomonas palustris TIE-1 6411358 YP_001992658.1 CDS Rpal_3683 NC_011004.1 3933482 3933943 D PFAM: regulatory protein MarR; KEGG: nha:Nham_3666 transcriptional regulator, MarR family; MarR family transcriptional regulator 3933482..3933943 Rhodopseudomonas palustris TIE-1 6411359 YP_001992659.1 CDS Rpal_3684 NC_011004.1 3934008 3936152 R PFAM: ABC transporter transmembrane region; ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_5078 ABC transporter ATPase and permease components; ABC transporter complement(3934008..3936152) Rhodopseudomonas palustris TIE-1 6411360 YP_001992660.1 CDS Rpal_3685 NC_011004.1 3936272 3938335 R PFAM: amine oxidase; methyltransferase type 11; KEGG: bbt:BBta_5079 hypothetical protein; amine oxidase complement(3936272..3938335) Rhodopseudomonas palustris TIE-1 6411361 YP_001992661.1 CDS Rpal_3686 NC_011004.1 3938638 3942840 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(3938638..3942840) Rhodopseudomonas palustris TIE-1 6411362 YP_001992662.1 CDS rpoB NC_011004.1 3942983 3947107 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(3942983..3947107) Rhodopseudomonas palustris TIE-1 6411363 YP_001992663.1 CDS rplL NC_011004.1 3947573 3947950 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(3947573..3947950) Rhodopseudomonas palustris TIE-1 6411364 YP_001992664.1 CDS rplJ NC_011004.1 3948006 3948524 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(3948006..3948524) Rhodopseudomonas palustris TIE-1 6411365 YP_001992665.1 CDS Rpal_3690 NC_011004.1 3949427 3950377 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bra:BRADO3050 glyoxylate reductase (glycolate reductase); D-isomer specific 2-hydroxyacid dehydrogenase complement(3949427..3950377) Rhodopseudomonas palustris TIE-1 6411366 YP_001992666.1 CDS rplA NC_011004.1 3950477 3951166 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(3950477..3951166) Rhodopseudomonas palustris TIE-1 6411367 YP_001992667.1 CDS rplK NC_011004.1 3951174 3951602 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(3951174..3951602) Rhodopseudomonas palustris TIE-1 6411368 YP_001992668.1 CDS nusG NC_011004.1 3951825 3952355 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(3951825..3952355) Rhodopseudomonas palustris TIE-1 6411369 YP_001992669.1 CDS secE NC_011004.1 3952372 3952560 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(3952372..3952560) Rhodopseudomonas palustris TIE-1 6411370 YP_001992670.1 CDS Rpal_3695 NC_011004.1 3952889 3953737 R TIGRFAM: TonB family protein; KEGG: atc:AGR_C_267 TonB protein; TonB family protein complement(3952889..3953737) Rhodopseudomonas palustris TIE-1 6411371 YP_001992671.1 CDS Rpal_3696 NC_011004.1 3953734 3954183 R PFAM: biopolymer transport protein ExbD/TolR; KEGG: atc:AGR_C_265 biopolymer transport ExbD protein; biopolymer transport protein ExbD/TolR complement(3953734..3954183) Rhodopseudomonas palustris TIE-1 6411372 YP_001992672.1 CDS Rpal_3697 NC_011004.1 3954198 3955148 R TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: oan:Oant_1254 TonB-system energizer ExbB type-1; tonB-system energizer ExbB complement(3954198..3955148) Rhodopseudomonas palustris TIE-1 6411373 YP_001992673.1 CDS Rpal_3698 NC_011004.1 3955145 3955828 R PFAM: Haem oxygenase-like; KEGG: atc:AGR_C_4545 heme oxygenase; Haem oxygenase-like protein complement(3955145..3955828) Rhodopseudomonas palustris TIE-1 6411374 YP_001992674.1 CDS Rpal_3699 NC_011004.1 3955930 3959490 R TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: plu:plu0739 hypothetical protein; TonB-dependent heme/hemoglobin receptor family protein complement(3955930..3959490) Rhodopseudomonas palustris TIE-1 6411375 YP_001992675.1 CDS Rpal_3700 NC_011004.1 3959566 3960531 R PFAM: FecR protein; KEGG: nwi:Nwi_1969 FecR protein; anti-FecI sigma factor FecR complement(3959566..3960531) Rhodopseudomonas palustris TIE-1 6411376 YP_001992676.1 CDS Rpal_3701 NC_011004.1 3960674 3961204 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit complement(3960674..3961204) Rhodopseudomonas palustris TIE-1 6411377 YP_001992677.1 CDS Rpal_3702 NC_011004.1 3961713 3962039 R KEGG: xau:Xaut_3357 hypothetical protein; hypothetical protein complement(3961713..3962039) Rhodopseudomonas palustris TIE-1 6411379 YP_001992678.1 CDS Rpal_3703 NC_011004.1 3962056 3963246 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(3962056..3963246) Rhodopseudomonas palustris TIE-1 6411380 YP_001992679.1 CDS Rpal_3704 NC_011004.1 3963432 3964655 D PFAM: beta-lactamase; KEGG: bja:blr5441 hypothetical protein; beta-lactamase 3963432..3964655 Rhodopseudomonas palustris TIE-1 6411381 YP_001992680.1 CDS Rpal_3705 NC_011004.1 3964809 3965576 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO3043 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3964809..3965576) Rhodopseudomonas palustris TIE-1 6411382 YP_001992681.1 CDS Rpal_3706 NC_011004.1 3965760 3966515 R PFAM: phosphoglycerate mutase; KEGG: bbt:BBta_5099 phosphoglycerate mutase family protein; phosphoglycerate mutase complement(3965760..3966515) Rhodopseudomonas palustris TIE-1 6411383 YP_001992682.1 CDS Rpal_3707 NC_011004.1 3966672 3967457 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO3041 short-chain dehydrogenase/reductase SDR family protein; short-chain dehydrogenase/reductase SDR 3966672..3967457 Rhodopseudomonas palustris TIE-1 6411384 YP_001992683.1 CDS Rpal_3708 NC_011004.1 3967699 3968658 D PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: cak:Caul_4355 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 3967699..3968658 Rhodopseudomonas palustris TIE-1 6411385 YP_001992684.1 CDS Rpal_3709 NC_011004.1 3968769 3969827 R PFAM: aminoglycoside phosphotransferase; KEGG: bra:BRADO3036 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(3968769..3969827) Rhodopseudomonas palustris TIE-1 6411386 YP_001992685.1 CDS Rpal_3710 NC_011004.1 3969979 3971211 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bra:BRADO3035 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(3969979..3971211) Rhodopseudomonas palustris TIE-1 6411387 YP_001992686.1 CDS Rpal_3711 NC_011004.1 3971456 3972118 D PFAM: regulatory protein TetR; KEGG: bja:blr5456 transcriptional regulatory protein; TetR family transcriptional regulator 3971456..3972118 Rhodopseudomonas palustris TIE-1 6411388 YP_001992687.1 CDS Rpal_3712 NC_011004.1 3972148 3973809 R KEGG: bbt:BBta_1448 membrane transport protein; membrane transport protein complement(3972148..3973809) Rhodopseudomonas palustris TIE-1 6411389 YP_001992688.1 CDS Rpal_3713 NC_011004.1 3974019 3974285 R hypothetical protein complement(3974019..3974285) Rhodopseudomonas palustris TIE-1 6411390 YP_001992689.1 CDS Rpal_3714 NC_011004.1 3974611 3975363 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: jan:Jann_1385 ABC transporter; ABC transporter complement(3974611..3975363) Rhodopseudomonas palustris TIE-1 6411391 YP_001992690.1 CDS Rpal_3715 NC_011004.1 3975360 3976130 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: jan:Jann_1384 ABC transporter; ABC transporter complement(3975360..3976130) Rhodopseudomonas palustris TIE-1 6411392 YP_001992691.1 CDS Rpal_3716 NC_011004.1 3976127 3977350 R PFAM: inner-membrane translocator; KEGG: sit:TM1040_1513 inner-membrane translocator; inner-membrane translocator complement(3976127..3977350) Rhodopseudomonas palustris TIE-1 6411393 YP_001992692.1 CDS Rpal_3717 NC_011004.1 3977355 3978362 R PFAM: inner-membrane translocator; KEGG: sit:TM1040_1512 inner-membrane translocator; inner-membrane translocator complement(3977355..3978362) Rhodopseudomonas palustris TIE-1 6411394 YP_001992693.1 CDS Rpal_3718 NC_011004.1 3978609 3979961 R KEGG: dsh:Dshi_1404 branched-chain amino acid ABC transporter periplasmic binding protein; branched-chain amino acid ABC transporter periplasmic binding protein complement(3978609..3979961) Rhodopseudomonas palustris TIE-1 6411395 YP_001992694.1 CDS Rpal_3719 NC_011004.1 3980407 3981792 R KEGG: azc:AZC_1612 hypothetical protein; hypothetical protein complement(3980407..3981792) Rhodopseudomonas palustris TIE-1 6411396 YP_001992695.1 CDS Rpal_3720 NC_011004.1 3981956 3983512 R PFAM: AMP-dependent synthetase and ligase; KEGG: pla:Plav_0154 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(3981956..3983512) Rhodopseudomonas palustris TIE-1 6411397 YP_001992696.1 CDS Rpal_3721 NC_011004.1 3983430 3984212 R PFAM: regulatory protein TetR; Bacterio-opsin activator HTH domain protein; KEGG: sus:Acid_5697 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3983430..3984212) Rhodopseudomonas palustris TIE-1 6411398 YP_001992697.1 CDS Rpal_3722 NC_011004.1 3984339 3985523 D PFAM: Thiolase; KEGG: mpt:Mpe_A0178 lipid-transfer protein; lipid-transfer protein 3984339..3985523 Rhodopseudomonas palustris TIE-1 6411399 YP_001992698.1 CDS Rpal_3723 NC_011004.1 3985535 3985981 D KEGG: pla:Plav_0156 hypothetical protein; hypothetical protein 3985535..3985981 Rhodopseudomonas palustris TIE-1 6411400 YP_001992699.1 CDS Rpal_3724 NC_011004.1 3985978 3986403 D PFAM: MaoC domain protein dehydratase; KEGG: pla:Plav_0157 MaoC domain protein dehydratase; MaoC domain-containing protein dehydratase 3985978..3986403 Rhodopseudomonas palustris TIE-1 6411401 YP_001992700.1 CDS Rpal_3725 NC_011004.1 3986427 3987254 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pla:Plav_0158 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3986427..3987254 Rhodopseudomonas palustris TIE-1 6411402 YP_001992701.1 CDS Rpal_3726 NC_011004.1 3987269 3988045 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xau:Xaut_0903 enoyl-CoA hydratase PaaB; Enoyl-CoA hydratase/isomerase 3987269..3988045 Rhodopseudomonas palustris TIE-1 6411403 YP_001992702.1 CDS Rpal_3727 NC_011004.1 3988307 3989416 D KEGG: bbt:BBta_6826 copper-containing nitrite reductase (NO-forming) NirK; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; nitrite reductase 3988307..3989416 Rhodopseudomonas palustris TIE-1 6411404 YP_001992703.1 CDS Rpal_3728 NC_011004.1 3989446 3990216 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bbt:BBta_3799 exodeoxyribonuclease III; exodeoxyribonuclease III Xth complement(3989446..3990216) Rhodopseudomonas palustris TIE-1 6411405 YP_001992704.1 CDS Rpal_3729 NC_011004.1 3990366 3991235 R KEGG: cak:Caul_0468 hypothetical protein; hypothetical protein complement(3990366..3991235) Rhodopseudomonas palustris TIE-1 6411406 YP_001992705.1 CDS Rpal_3730 NC_011004.1 3991661 3992170 D PFAM: protein of unknown function DUF892; KEGG: bja:bll7648 hypothetical protein; hypothetical protein 3991661..3992170 Rhodopseudomonas palustris TIE-1 6411408 YP_001992706.1 CDS Rpal_3731 NC_011004.1 3992185 3992751 D KEGG: bra:BRADO3437 hypothetical protein; hypothetical protein 3992185..3992751 Rhodopseudomonas palustris TIE-1 6411409 YP_001992707.1 CDS Rpal_3732 NC_011004.1 3992895 3995012 D PFAM: catalase domain protein; KEGG: sme:SMb20007 probable catalase C protein; catalase 3992895..3995012 Rhodopseudomonas palustris TIE-1 6411410 YP_001992708.1 CDS Rpal_3733 NC_011004.1 3995228 3997429 D KEGG: gbe:GbCGDNIH1_0916 isoamylase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 3995228..3997429 Rhodopseudomonas palustris TIE-1 6411411 YP_001992709.1 CDS Rpal_3734 NC_011004.1 3997589 3998437 D PFAM: transglutaminase domain protein; KEGG: mrd:Mrad2831_2448 transglutaminase domain protein; transglutaminase domain-containing protein 3997589..3998437 Rhodopseudomonas palustris TIE-1 6411412 YP_001992710.1 CDS Rpal_3735 NC_011004.1 3998619 3998831 R KEGG: bbt:BBta_4265 hypothetical protein; hypothetical protein complement(3998619..3998831) Rhodopseudomonas palustris TIE-1 6411413 YP_001992711.1 CDS Rpal_3736 NC_011004.1 3998902 4000101 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mex:Mext_4798 2-alkenal reductase; 2-alkenal reductase complement(3998902..4000101) Rhodopseudomonas palustris TIE-1 6411414 YP_001992712.1 CDS Rpal_3737 NC_011004.1 4000402 4001076 D PFAM: peptidase M50; KEGG: bja:bll3910 hypothetical protein; peptidase M50 4000402..4001076 Rhodopseudomonas palustris TIE-1 6411415 YP_001992713.1 CDS Rpal_3738 NC_011004.1 4001763 4001981 R hypothetical protein complement(4001763..4001981) Rhodopseudomonas palustris TIE-1 6411416 YP_001992714.1 CDS Rpal_3739 NC_011004.1 4002282 4005419 D PFAM: CheB methylesterase; MCP methyltransferase CheR-type; HWE histidine kinase; PAS fold-4 domain protein; KEGG: nha:Nham_4605 MCP methyltransferase, CheR-type; CheR-type MCP methyltransferase 4002282..4005419 Rhodopseudomonas palustris TIE-1 6411417 YP_001992715.1 CDS Rpal_3740 NC_011004.1 4005488 4005886 R KEGG: mrd:Mrad2831_5711 hypothetical protein; hypothetical protein complement(4005488..4005886) Rhodopseudomonas palustris TIE-1 6411418 YP_001992716.1 CDS Rpal_3741 NC_011004.1 4005898 4006626 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mes:Meso_1485 cyclic nucleotide-binding protein; Crp/Fnr family transcriptional regulator complement(4005898..4006626) Rhodopseudomonas palustris TIE-1 6411419 YP_001992717.1 CDS Rpal_3743 NC_011004.1 4007763 4008443 D KEGG: bbt:BBta_1078 hypothetical protein; hypothetical protein 4007763..4008443 Rhodopseudomonas palustris TIE-1 6411421 YP_001992718.1 CDS Rpal_3744 NC_011004.1 4008571 4010067 R PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: bra:BRADO0757 phosphomannomutase/phosphoglucomutase (PMM / PGM); phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II complement(4008571..4010067) Rhodopseudomonas palustris TIE-1 6411422 YP_001992719.1 CDS Rpal_3745 NC_011004.1 4010114 4011550 R KEGG: nwi:Nwi_1075 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; nucleotidyl transferase; cupin; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(4010114..4011550) Rhodopseudomonas palustris TIE-1 6411423 YP_001992720.1 CDS Rpal_3746 NC_011004.1 4011786 4013558 R KEGG: tcr:507895.124 hypothetical protein PROSITE: ALA_RICH ARG_RICH GLU_RICH NLS_BP; hypothetical protein complement(4011786..4013558) Rhodopseudomonas palustris TIE-1 6411424 YP_001992721.1 CDS Rpal_3747 NC_011004.1 4013899 4014768 R KEGG: ava:Ava_4835 hypothetical protein; hypothetical protein complement(4013899..4014768) Rhodopseudomonas palustris TIE-1 6411425 YP_001992722.1 CDS Rpal_3748 NC_011004.1 4016464 4016949 D KEGG: bvi:Bcep1808_6712 hypothetical protein; hypothetical protein 4016464..4016949 Rhodopseudomonas palustris TIE-1 6411426 YP_001992723.1 CDS Rpal_3749 NC_011004.1 4017554 4017970 R SMART: helix-turn-helix domain protein; KEGG: mmw:Mmwyl1_4217 helix-turn-helix domain protein; helix-turn-helix domain-containing protein complement(4017554..4017970) Rhodopseudomonas palustris TIE-1 6411427 YP_001992724.1 CDS Rpal_3750 NC_011004.1 4018349 4020106 R PFAM: Curlin associated repeat protein; KEGG: mul:MUL_3169 PPE family protein; curlin associated repeat-containing protein complement(4018349..4020106) Rhodopseudomonas palustris TIE-1 6411428 YP_001992725.1 CDS Rpal_3751 NC_011004.1 4020664 4021047 D KEGG: rsq:Rsph17025_3601 hypothetical protein; hypothetical protein 4020664..4021047 Rhodopseudomonas palustris TIE-1 6411429 YP_001992726.1 CDS Rpal_3752 NC_011004.1 4021032 4021562 D KEGG: gbe:GbCGDNIH1_1408 hemagglutinin-related protein; hypothetical protein 4021032..4021562 Rhodopseudomonas palustris TIE-1 6411430 YP_001992727.1 CDS Rpal_3753 NC_011004.1 4021595 4021879 D KEGG: pen:PSEEN2838 curli production assembly/transport component CsgF precursor; hypothetical protein 4021595..4021879 Rhodopseudomonas palustris TIE-1 6411431 YP_001992728.1 CDS Rpal_3754 NC_011004.1 4021936 4022811 D PFAM: Curli production assembly/transport component CsgG; KEGG: bur:Bcep18194_B2588 curli production assembly/transport component CsgG; curli production assembly/transport component CsgG 4021936..4022811 Rhodopseudomonas palustris TIE-1 6411432 YP_001992729.1 CDS Rpal_3755 NC_011004.1 4023064 4023453 R KEGG: dre:570672 similar to synapsin Ia; hypothetical protein complement(4023064..4023453) Rhodopseudomonas palustris TIE-1 6411433 YP_001992730.1 CDS Rpal_3756 NC_011004.1 4023588 4023929 R KEGG: psa:PST_2861 PPE-repeat protein; hypothetical protein complement(4023588..4023929) Rhodopseudomonas palustris TIE-1 6411434 YP_001992731.1 CDS Rpal_3757 NC_011004.1 4024104 4024289 R hypothetical protein complement(4024104..4024289) Rhodopseudomonas palustris TIE-1 6411435 YP_001992732.1 CDS Rpal_3758 NC_011004.1 4024495 4025202 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: mrd:Mrad2831_0013 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase complement(4024495..4025202) Rhodopseudomonas palustris TIE-1 6411436 YP_001992733.1 CDS Rpal_3759 NC_011004.1 4025218 4026246 R PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: nfa:nfa7580 hypothetical protein; hypothetical protein complement(4025218..4026246) Rhodopseudomonas palustris TIE-1 6411437 YP_001992734.1 CDS Rpal_3760 NC_011004.1 4026388 4028697 R PFAM: condensation domain protein; KEGG: mes:Meso_2581 condensation domain; condensation domain-containing protein complement(4026388..4028697) Rhodopseudomonas palustris TIE-1 6411438 YP_001992735.1 CDS Rpal_3761 NC_011004.1 4028694 4036742 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; beta-ketoacyl synthase ; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; amino acid adenylation domain-containing protein complement(4028694..4036742) Rhodopseudomonas palustris TIE-1 6411439 YP_001992736.1 CDS Rpal_3762 NC_011004.1 4036765 4038678 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: mxa:MXAN_4601 non-ribosomal peptide synthase; amino acid adenylation domain-containing protein complement(4036765..4038678) Rhodopseudomonas palustris TIE-1 6411440 YP_001992737.1 CDS Rpal_3763 NC_011004.1 4039166 4040305 D PFAM: acyltransferase 3; KEGG: rle:RL3831 O-acetyl transferase; acyltransferase 3 4039166..4040305 Rhodopseudomonas palustris TIE-1 6411441 YP_001992738.1 CDS Rpal_3764 NC_011004.1 4040396 4042213 D KEGG: bbt:BBta_1040 hypothetical protein; hypothetical protein 4040396..4042213 Rhodopseudomonas palustris TIE-1 6411442 YP_001992739.1 CDS Rpal_3765 NC_011004.1 4042276 4043397 D PFAM: glycosyl transferase group 1; KEGG: bbt:BBta_1074 glycosyl transferase, group 1; group 1 glycosyl transferase 4042276..4043397 Rhodopseudomonas palustris TIE-1 6411443 YP_001992740.1 CDS Rpal_3766 NC_011004.1 4043534 4045282 D PFAM: FAD dependent oxidoreductase; GMC oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mes:Meso_2585 glucose-methanol-choline oxidoreductase; GMC oxidoreductase 4043534..4045282 Rhodopseudomonas palustris TIE-1 6411444 YP_001992741.1 CDS Rpal_3767 NC_011004.1 4045277 4046719 R KEGG: bbt:BBta_1039 membrane protein of unknown function; hypothetical protein complement(4045277..4046719) Rhodopseudomonas palustris TIE-1 6411445 YP_001992742.1 CDS Rpal_3768 NC_011004.1 4047213 4048313 D PFAM: glycosyl transferase group 1; KEGG: bbt:BBta_1042 glycosyl transferase group 1; group 1 glycosyl transferase 4047213..4048313 Rhodopseudomonas palustris TIE-1 6411446 YP_001992743.1 CDS Rpal_3769 NC_011004.1 4048336 4049226 D KEGG: mrd:Mrad2831_4549 glycosyl transferase group 1; group 1 glycosyl transferase 4048336..4049226 Rhodopseudomonas palustris TIE-1 6411447 YP_001992744.1 CDS Rpal_3770 NC_011004.1 4049331 4050824 R PFAM: polysaccharide biosynthesis protein; KEGG: bbt:BBta_1044 membrane protein of unknown function with polysaccharide biosynthesis protein domain; polysaccharide biosynthesis protein complement(4049331..4050824) Rhodopseudomonas palustris TIE-1 6411448 YP_001992745.1 CDS Rpal_3771 NC_011004.1 4050966 4052102 R PFAM: acyltransferase 3; KEGG: xau:Xaut_1956 acyltransferase 3; acyltransferase 3 complement(4050966..4052102) Rhodopseudomonas palustris TIE-1 6411449 YP_001992746.1 CDS Rpal_3772 NC_011004.1 4052712 4053857 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mes:Meso_2584 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 4052712..4053857 Rhodopseudomonas palustris TIE-1 6411450 YP_001992747.1 CDS Rpal_3773 NC_011004.1 4053933 4054739 D PFAM: glycosyl transferase family 25; KEGG: mpt:Mpe_A0728 glycosyltransferase involved in LPS biosynthesis-like protein; glycosyl transferase family protein 4053933..4054739 Rhodopseudomonas palustris TIE-1 6411451 YP_001992748.1 CDS Rpal_3774 NC_011004.1 4054770 4055888 D PFAM: glycosyl transferase group 1; KEGG: bbt:BBta_1037 glycosyltransferase group 1 family protein; group 1 glycosyl transferase 4054770..4055888 Rhodopseudomonas palustris TIE-1 6411452 YP_001992749.1 CDS Rpal_3775 NC_011004.1 4055885 4056661 R PFAM: metallophosphoesterase; KEGG: bbt:BBta_1036 serine/threonine protein phosphatase; metallophosphoesterase complement(4055885..4056661) Rhodopseudomonas palustris TIE-1 6411453 YP_001992750.1 CDS Rpal_3776 NC_011004.1 4056911 4057549 D KEGG: bbt:BBta_1035 exported protein of unknown function; hypothetical protein 4056911..4057549 Rhodopseudomonas palustris TIE-1 6411454 YP_001992751.1 CDS Rpal_3777 NC_011004.1 4057608 4059956 D KEGG: bbt:BBta_1034 tyrosine-protein kinase injvolved in exopolysaccharide polymerization; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; capsular polysaccharide biosynthesis protein 4057608..4059956 Rhodopseudomonas palustris TIE-1 6411455 YP_001992752.1 CDS Rpal_3778 NC_011004.1 4060013 4060669 D KEGG: bbt:BBta_1033 exported protein of unknown function; hypothetical protein 4060013..4060669 Rhodopseudomonas palustris TIE-1 6411456 YP_001992753.1 CDS Rpal_3779 NC_011004.1 4061574 4062248 D PFAM: sugar transferase; KEGG: atc:AGR_L_2989 hypothetical protein; undecaprenyl-phosphate galactose phosphotransferase 4061574..4062248 Rhodopseudomonas palustris TIE-1 6411457 YP_001992754.1 CDS Rpal_3780 NC_011004.1 4063029 4063691 D PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: bbt:BBta_1030 exported protein of unknown function; transglutaminase 4063029..4063691 Rhodopseudomonas palustris TIE-1 6411458 YP_001992755.1 CDS Rpal_3781 NC_011004.1 4063752 4065185 R PFAM: O-antigen polymerase; KEGG: bbt:BBta_1029 O-antigen polymerase, membrane protein; O-antigen polymerase complement(4063752..4065185) Rhodopseudomonas palustris TIE-1 6411459 YP_001992756.1 CDS Rpal_3782 NC_011004.1 4065182 4066390 R PFAM: polysaccharide export protein; KEGG: bbt:BBta_1028 capsule polysaccharide export outer membrane protein; polysaccharide export protein complement(4065182..4066390) Rhodopseudomonas palustris TIE-1 6411460 YP_001992757.1 CDS Rpal_3783 NC_011004.1 4067152 4067403 D KEGG: bra:BRADO4758 conserved hypothetical protein, membrane protein; hypothetical protein 4067152..4067403 Rhodopseudomonas palustris TIE-1 6411461 YP_001992758.1 CDS Rpal_3784 NC_011004.1 4067632 4067913 D KEGG: bbt:BBta_1063 exported protein of unknown function; hypothetical protein 4067632..4067913 Rhodopseudomonas palustris TIE-1 6411462 YP_001992759.1 CDS Rpal_3785 NC_011004.1 4068532 4068807 R hypothetical protein complement(4068532..4068807) Rhodopseudomonas palustris TIE-1 6411463 YP_001992760.1 CDS Rpal_3786 NC_011004.1 4069313 4070770 D KEGG: mrd:Mrad2831_2505 hypothetical protein; hypothetical protein 4069313..4070770 Rhodopseudomonas palustris TIE-1 6411464 YP_001992761.1 CDS Rpal_3787 NC_011004.1 4070798 4071070 R hypothetical protein complement(4070798..4071070) Rhodopseudomonas palustris TIE-1 6411465 YP_001992762.1 CDS Rpal_3788 NC_011004.1 4071081 4071710 R hypothetical protein complement(4071081..4071710) Rhodopseudomonas palustris TIE-1 6411466 YP_001992763.1 CDS Rpal_3789 NC_011004.1 4071781 4072152 R hypothetical protein complement(4071781..4072152) Rhodopseudomonas palustris TIE-1 6411467 YP_001992764.1 CDS Rpal_3790 NC_011004.1 4072636 4073016 D hypothetical protein 4072636..4073016 Rhodopseudomonas palustris TIE-1 6411468 YP_001992765.1 CDS Rpal_3791 NC_011004.1 4073099 4073884 D hypothetical protein 4073099..4073884 Rhodopseudomonas palustris TIE-1 6411469 YP_001992766.1 CDS Rpal_3792 NC_011004.1 4073916 4074260 R hypothetical protein complement(4073916..4074260) Rhodopseudomonas palustris TIE-1 6411470 YP_001992767.1 CDS Rpal_3793 NC_011004.1 4074257 4074742 R PFAM: VRR-NUC domain protein; KEGG: ppu:PP_1554 hypothetical protein; VRR-NUC domain-containing protein complement(4074257..4074742) Rhodopseudomonas palustris TIE-1 6411471 YP_001992768.1 CDS Rpal_3794 NC_011004.1 4074742 4075620 R PFAM: metallophosphoesterase; KEGG: pnu:Pnuc_0863 metallophosphoesterase; metallophosphoesterase complement(4074742..4075620) Rhodopseudomonas palustris TIE-1 6411472 YP_001992769.1 CDS Rpal_3795 NC_011004.1 4075610 4075975 R hypothetical protein complement(4075610..4075975) Rhodopseudomonas palustris TIE-1 6411473 YP_001992770.1 CDS Rpal_3796 NC_011004.1 4076122 4076439 D hypothetical protein 4076122..4076439 Rhodopseudomonas palustris TIE-1 6411474 YP_001992771.1 CDS Rpal_3797 NC_011004.1 4076411 4076917 R hypothetical protein complement(4076411..4076917) Rhodopseudomonas palustris TIE-1 6411475 YP_001992772.1 CDS Rpal_3798 NC_011004.1 4077035 4077343 D hypothetical protein 4077035..4077343 Rhodopseudomonas palustris TIE-1 6411476 YP_001992773.1 CDS Rpal_3799 NC_011004.1 4077327 4077614 D hypothetical protein 4077327..4077614 Rhodopseudomonas palustris TIE-1 6411477 YP_001992774.1 CDS Rpal_3800 NC_011004.1 4077614 4078201 D KEGG: afm:AFUA_6G04940 cytokinesis protein SepA/Bni1; hypothetical protein 4077614..4078201 Rhodopseudomonas palustris TIE-1 6411478 YP_001992775.1 CDS Rpal_3801 NC_011004.1 4078185 4078844 D hypothetical protein 4078185..4078844 Rhodopseudomonas palustris TIE-1 6411479 YP_001992776.1 CDS Rpal_3802 NC_011004.1 4079396 4082080 R PFAM: type III restriction protein res subunit; KEGG: btr:Btr_1179 hypothetical protein; type III restriction protein res subunit complement(4079396..4082080) Rhodopseudomonas palustris TIE-1 6411480 YP_001992777.1 CDS Rpal_3803 NC_011004.1 4082080 4083780 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: btr:Btr_1180 methyltransferase; adenine-specific DNA-methyltransferase complement(4082080..4083780) Rhodopseudomonas palustris TIE-1 6411481 YP_001992778.1 CDS Rpal_3804 NC_011004.1 4083777 4086662 R PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ecw:EcE24377A_3320 helicase, SNF2 family; SNF2-like protein complement(4083777..4086662) Rhodopseudomonas palustris TIE-1 6411482 YP_001992779.1 CDS Rpal_3805 NC_011004.1 4086788 4087240 R KEGG: bur:Bcep18194_B3081 transcriptional regulator, LysR family; hypothetical protein complement(4086788..4087240) Rhodopseudomonas palustris TIE-1 6411483 YP_001992780.1 CDS Rpal_3806 NC_011004.1 4087804 4088181 D KEGG: bbt:BBta_3430 hypothetical protein; hypothetical protein 4087804..4088181 Rhodopseudomonas palustris TIE-1 6411484 YP_001992781.1 CDS Rpal_3807 NC_011004.1 4088192 4088641 D KEGG: bbt:BBta_3319 hypothetical protein; hypothetical protein 4088192..4088641 Rhodopseudomonas palustris TIE-1 6411485 YP_001992782.1 CDS Rpal_3808 NC_011004.1 4088641 4089381 D PFAM: protein of unknown function DUF159; KEGG: bbt:BBta_3432 hypothetical protein; hypothetical protein 4088641..4089381 Rhodopseudomonas palustris TIE-1 6411486 YP_001992783.1 CDS Rpal_3809 NC_011004.1 4089353 4090591 D PFAM: UMUC domain protein DNA-repair protein; KEGG: bra:BRADO1464 DNA polymerase IV; DNA-directed DNA polymerase 4089353..4090591 Rhodopseudomonas palustris TIE-1 6411487 YP_001992784.1 CDS Rpal_3810 NC_011004.1 4091174 4091731 R hypothetical protein complement(4091174..4091731) Rhodopseudomonas palustris TIE-1 6411488 YP_001992785.1 CDS Rpal_3811 NC_011004.1 4092091 4094613 R hypothetical protein complement(4092091..4094613) Rhodopseudomonas palustris TIE-1 6411489 YP_001992786.1 CDS Rpal_3812 NC_011004.1 4094973 4095419 R hypothetical protein complement(4094973..4095419) Rhodopseudomonas palustris TIE-1 6411490 YP_001992787.1 CDS Rpal_3813 NC_011004.1 4095502 4097526 D PFAM: ATPase AAA; ATPase AAA; SMART: ATPase AAA; KEGG: nha:Nham_1979 ATPase AAA, central region; ATPase AAA 4095502..4097526 Rhodopseudomonas palustris TIE-1 6411491 YP_001992788.1 CDS Rpal_3814 NC_011004.1 4097538 4097846 D KEGG: nha:Nham_1977 hypothetical protein; hypothetical protein 4097538..4097846 Rhodopseudomonas palustris TIE-1 6411492 YP_001992789.1 CDS Rpal_3815 NC_011004.1 4097849 4098031 D hypothetical protein 4097849..4098031 Rhodopseudomonas palustris TIE-1 6411493 YP_001992790.1 CDS Rpal_3816 NC_011004.1 4098748 4099521 R PFAM: alpha/beta hydrolase fold; KEGG: nfa:nfa54420 hydrolase; alpha/beta hydrolase fold protein complement(4098748..4099521) Rhodopseudomonas palustris TIE-1 6411494 YP_001992791.1 CDS Rpal_3817 NC_011004.1 4100163 4100795 R PFAM: integrase family protein; KEGG: bps:BPSL0587 phage integrase family protein; integrase family protein complement(4100163..4100795) Rhodopseudomonas palustris TIE-1 6411495 YP_001992792.1 CDS Rpal_3818 NC_011004.1 4101741 4102538 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: syn:sll1169 hypothetical protein; Crp/Fnr family transcriptional regulator 4101741..4102538 Rhodopseudomonas palustris TIE-1 6411496 YP_001992793.1 CDS Rpal_3819 NC_011004.1 4102591 4103547 R PFAM: HWE histidine kinase; KEGG: bra:BRADO2814 conserved hypothetical protein; sensor histidine kinase (HWE family); signal transduction histidine kinase complement(4102591..4103547) Rhodopseudomonas palustris TIE-1 6411497 YP_001992794.1 CDS Rpal_3820 NC_011004.1 4103597 4104112 R KEGG: rsp:RSP_3992 hypothetical protein; hypothetical protein complement(4103597..4104112) Rhodopseudomonas palustris TIE-1 6411498 YP_001992795.1 CDS Rpal_3821 NC_011004.1 4104341 4104514 D PFAM: protein of unknown function DUF1328; KEGG: rle:RL4195 transmembrane protein; hypothetical protein 4104341..4104514 Rhodopseudomonas palustris TIE-1 6411499 YP_001992796.1 CDS Rpal_3822 NC_011004.1 4104651 4105955 D KEGG: ana:alr5319 hypothetical protein; hypothetical protein 4104651..4105955 Rhodopseudomonas palustris TIE-1 6411500 YP_001992797.1 CDS Rpal_3823 NC_011004.1 4106218 4107471 D PFAM: sodium/hydrogen exchanger; KEGG: mrd:Mrad2831_6040 sodium/hydrogen exchanger; sodium/hydrogen exchanger 4106218..4107471 Rhodopseudomonas palustris TIE-1 6411501 YP_001992798.1 CDS Rpal_3824 NC_011004.1 4107587 4108438 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mlo:mll4860 hypothetical protein; cation diffusion facilitator family transporter 4107587..4108438 Rhodopseudomonas palustris TIE-1 6411502 YP_001992799.1 CDS Rpal_3825 NC_011004.1 4108566 4110968 D TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: xcc:XCC1575 glucose dehydrogenase; membrane-bound PQQ-dependent dehydrogenase 4108566..4110968 Rhodopseudomonas palustris TIE-1 6411503 YP_001992800.1 CDS Rpal_3826 NC_011004.1 4110972 4111724 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: jan:Jann_1385 ABC transporter; ABC transporter complement(4110972..4111724) Rhodopseudomonas palustris TIE-1 6411504 YP_001992801.1 CDS Rpal_3827 NC_011004.1 4111721 4112491 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: jan:Jann_1384 ABC transporter; ABC transporter complement(4111721..4112491) Rhodopseudomonas palustris TIE-1 6411505 YP_001992802.1 CDS Rpal_3828 NC_011004.1 4112488 4113708 R PFAM: inner-membrane translocator; KEGG: sit:TM1040_1513 inner-membrane translocator; inner-membrane translocator complement(4112488..4113708) Rhodopseudomonas palustris TIE-1 6411506 YP_001992803.1 CDS Rpal_3829 NC_011004.1 4113713 4114720 R PFAM: inner-membrane translocator; KEGG: sit:TM1040_1512 inner-membrane translocator; inner-membrane translocator complement(4113713..4114720) Rhodopseudomonas palustris TIE-1 6411507 YP_001992804.1 CDS Rpal_3830 NC_011004.1 4114946 4116298 R KEGG: dsh:Dshi_1404 branched-chain amino acid ABC transporter periplasmic binding protein; branched-chain amino acid ABC transporter periplasmic binding protein complement(4114946..4116298) Rhodopseudomonas palustris TIE-1 6411508 YP_001992805.1 CDS Rpal_3831 NC_011004.1 4116931 4117440 D PFAM: PRC-barrel domain protein; KEGG: atc:AGR_C_3639 hypothetical protein; PRC-barrel domain-containing protein 4116931..4117440 Rhodopseudomonas palustris TIE-1 6411509 YP_001992806.1 CDS Rpal_3832 NC_011004.1 4117739 4118857 D PFAM: protein of unknown function UPF0118; KEGG: gbe:GbCGDNIH1_0302 hypothetical membrane spanning protein; hypothetical protein 4117739..4118857 Rhodopseudomonas palustris TIE-1 6411510 YP_001992807.1 CDS Rpal_3833 NC_011004.1 4118842 4119774 D PFAM: ribonuclease BN; KEGG: mrd:Mrad2831_1360 ribonuclease BN; ribonuclease BN 4118842..4119774 Rhodopseudomonas palustris TIE-1 6411511 YP_001992808.1 CDS Rpal_3834 NC_011004.1 4119931 4120611 R PFAM: peptidoglycan-binding LysM; KEGG: sen:SACE_2783 aldehyde dehydrogenase (NAD+); peptidoglycan-binding LysM complement(4119931..4120611) Rhodopseudomonas palustris TIE-1 6411512 YP_001992809.1 CDS Rpal_3835 NC_011004.1 4120774 4120902 R hypothetical protein complement(4120774..4120902) Rhodopseudomonas palustris TIE-1 6411513 YP_001992810.1 CDS Rpal_3836 NC_011004.1 4121170 4123395 D PFAM: glycosyl transferase family 20; KEGG: ppd:Ppro_3271 alpha,alpha-trehalose-phosphate synthase (UDP-forming); alpha,alpha-trehalose-phosphate synthase 4121170..4123395 Rhodopseudomonas palustris TIE-1 6411514 YP_001992811.1 CDS Rpal_3837 NC_011004.1 4123784 4125382 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll7188 probable ATP-binding protein; ABC transporter complement(4123784..4125382) Rhodopseudomonas palustris TIE-1 6411515 YP_001992812.1 CDS Rpal_3838 NC_011004.1 4125646 4126389 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mms:mma_1860 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 4125646..4126389 Rhodopseudomonas palustris TIE-1 6411516 YP_001992813.1 CDS Rpal_3839 NC_011004.1 4126410 4127042 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: azc:AZC_1361 high similarity to two-component response regulator; LuxR family transcriptional regulator complement(4126410..4127042) Rhodopseudomonas palustris TIE-1 6411517 YP_001992814.1 CDS Rpal_3840 NC_011004.1 4127039 4129318 R KEGG: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(4127039..4129318) Rhodopseudomonas palustris TIE-1 6411518 YP_001992815.1 CDS Rpal_3841 NC_011004.1 4129463 4129990 R KEGG: cytochrome P460; cytochrome P460 complement(4129463..4129990) Rhodopseudomonas palustris TIE-1 6411519 YP_001992816.1 CDS Rpal_3842 NC_011004.1 4130058 4131101 R PFAM: alpha/beta hydrolase fold; KEGG: mrd:Mrad2831_4572 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(4130058..4131101) Rhodopseudomonas palustris TIE-1 6411520 YP_001992817.1 CDS Rpal_3844 NC_011004.1 4133799 4134626 D TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: nha:Nham_2508 RNA methyltransferase TrmH, group 3; RNA methyltransferase 4133799..4134626 Rhodopseudomonas palustris TIE-1 6411523 YP_001992818.1 CDS Rpal_3845 NC_011004.1 4134699 4135199 R KEGG: nha:Nham_2509 hypothetical protein; hypothetical protein complement(4134699..4135199) Rhodopseudomonas palustris TIE-1 6411524 YP_001992819.1 CDS Rpal_3846 NC_011004.1 4135257 4135730 R KEGG: nha:Nham_2510 hypothetical protein; hypothetical protein complement(4135257..4135730) Rhodopseudomonas palustris TIE-1 6411525 YP_001992820.1 CDS Rpal_3847 NC_011004.1 4137446 4137832 D hypothetical protein 4137446..4137832 Rhodopseudomonas palustris TIE-1 6411527 YP_001992821.1 CDS Rpal_3848 NC_011004.1 4138041 4138487 R PFAM: BLUF domain protein; KEGG: mrd:Mrad2831_4411 BLUF domain protein; BLUF domain-containing protein complement(4138041..4138487) Rhodopseudomonas palustris TIE-1 6411528 YP_001992822.1 CDS Rpal_3849 NC_011004.1 4138637 4139218 R KEGG: bja:bll4036 hypothetical protein; hypothetical protein complement(4138637..4139218) Rhodopseudomonas palustris TIE-1 6411529 YP_001992823.1 CDS Rpal_3850 NC_011004.1 4139638 4139850 D hypothetical protein 4139638..4139850 Rhodopseudomonas palustris TIE-1 6411530 YP_001992824.1 CDS Rpal_3851 NC_011004.1 4140229 4140342 R hypothetical protein complement(4140229..4140342) Rhodopseudomonas palustris TIE-1 6411531 YP_001992825.1 CDS Rpal_3852 NC_011004.1 4140500 4140625 R hypothetical protein complement(4140500..4140625) Rhodopseudomonas palustris TIE-1 6411532 YP_001992826.1 CDS Rpal_3853 NC_011004.1 4140809 4141531 R PFAM: OmpA domain protein transmembrane region-containing protein; porin; KEGG: nha:Nham_1666 OmpA-like transmembrane region; porin complement(4140809..4141531) Rhodopseudomonas palustris TIE-1 6411533 YP_001992827.1 CDS Rpal_3854 NC_011004.1 4141711 4142148 R KEGG: nha:Nham_1665 hypothetical protein; hypothetical protein complement(4141711..4142148) Rhodopseudomonas palustris TIE-1 6411534 YP_001992828.1 CDS Rpal_3855 NC_011004.1 4142241 4142537 R KEGG: dme:Dmel_CG13953 CG13953; hypothetical protein complement(4142241..4142537) Rhodopseudomonas palustris TIE-1 6411535 YP_001992829.1 CDS ppnK NC_011004.1 4142844 4143668 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 4142844..4143668 Rhodopseudomonas palustris TIE-1 6411536 YP_001992830.1 CDS Rpal_3857 NC_011004.1 4143765 4146686 D KEGG: sil:SPO1926 hypothetical protein; hypothetical protein 4143765..4146686 Rhodopseudomonas palustris TIE-1 6411537 YP_001992831.1 CDS Rpal_3858 NC_011004.1 4146844 4147548 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN3288 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(4146844..4147548) Rhodopseudomonas palustris TIE-1 6411538 YP_001992832.1 CDS Rpal_3859 NC_011004.1 4147812 4147988 R hypothetical protein complement(4147812..4147988) Rhodopseudomonas palustris TIE-1 6411539 YP_001992833.1 CDS Rpal_3860 NC_011004.1 4148351 4148536 R hypothetical protein complement(4148351..4148536) Rhodopseudomonas palustris TIE-1 6411540 YP_001992834.1 CDS Rpal_3861 NC_011004.1 4148752 4149297 D PFAM: response regulator receiver; KEGG: bja:blr5517 two-component response regulator; response regulator receiver protein 4148752..4149297 Rhodopseudomonas palustris TIE-1 6411541 YP_001992835.1 CDS Rpal_3862 NC_011004.1 4149315 4149905 D PFAM: Hpt domain protein; KEGG: bja:blr5518 hypothetical protein; CheA signal transduction histidine kinase 4149315..4149905 Rhodopseudomonas palustris TIE-1 6411542 YP_001992836.1 CDS Rpal_3863 NC_011004.1 4150192 4151361 R KEGG: nha:Nham_1660 hypothetical protein; hypothetical protein complement(4150192..4151361) Rhodopseudomonas palustris TIE-1 6411543 YP_001992837.1 CDS Rpal_3864 NC_011004.1 4151802 4152587 D PFAM: ABC transporter inner membrane protein; KEGG: pnu:Pnuc_1186 ABC transporter inner membrane protein; ABC transporter inner membrane protein 4151802..4152587 Rhodopseudomonas palustris TIE-1 6411544 YP_001992838.1 CDS Rpal_3865 NC_011004.1 4152623 4153615 D KEGG: pnu:Pnuc_1185 ABC transporter substrate-binding protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein 4152623..4153615 Rhodopseudomonas palustris TIE-1 6411545 YP_001992839.1 CDS Rpal_3866 NC_011004.1 4153612 4154448 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_0835 ABC transporter; ABC transporter 4153612..4154448 Rhodopseudomonas palustris TIE-1 6411546 YP_001992840.1 CDS Rpal_3867 NC_011004.1 4154509 4156182 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: azc:AZC_3883 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4154509..4156182 Rhodopseudomonas palustris TIE-1 6411547 YP_001992841.1 CDS Rpal_3868 NC_011004.1 4156261 4157208 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_1158 LysR substrate-binding; LysR family transcriptional regulator 4156261..4157208 Rhodopseudomonas palustris TIE-1 6411548 YP_001992842.1 CDS Rpal_3869 NC_011004.1 4157215 4158255 R KEGG: bja:bll5520 hypothetical protein; hypothetical protein complement(4157215..4158255) Rhodopseudomonas palustris TIE-1 6411549 YP_001992843.1 CDS Rpal_3870 NC_011004.1 4158452 4159159 D KEGG: dvl:Dvul_1284 hypothetical protein; hypothetical protein 4158452..4159159 Rhodopseudomonas palustris TIE-1 6411550 YP_001992844.1 CDS hisI NC_011004.1 4159169 4159624 R PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase complement(4159169..4159624) Rhodopseudomonas palustris TIE-1 6411551 YP_001992845.1 CDS folE NC_011004.1 4159653 4160342 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(4159653..4160342) Rhodopseudomonas palustris TIE-1 6411552 YP_001992846.1 CDS Rpal_3873 NC_011004.1 4160610 4161062 D PFAM: nitrogen-fixing NifU domain protein; KEGG: bra:BRADO2983 conserved hypothetical protein; NifU-like N-ter domain; nitrogen-fixing NifU domain-containing protein 4160610..4161062 Rhodopseudomonas palustris TIE-1 6411553 YP_001992847.1 CDS Rpal_3874 NC_011004.1 4161217 4162107 R KEGG: nha:Nham_1655 hypothetical protein; hypothetical protein complement(4161217..4162107) Rhodopseudomonas palustris TIE-1 6411554 YP_001992848.1 CDS Rpal_3875 NC_011004.1 4162348 4162737 D PFAM: protein of unknown function DUF37; KEGG: nha:Nham_1654 hypothetical protein; hypothetical protein 4162348..4162737 Rhodopseudomonas palustris TIE-1 6411555 YP_001992849.1 CDS Rpal_3876 NC_011004.1 4162724 4163497 R KEGG: bra:BRADO3451 conserved hypothetical protein; signal peptide; hypothetical protein complement(4162724..4163497) Rhodopseudomonas palustris TIE-1 6411556 YP_001992850.1 CDS Rpal_3877 NC_011004.1 4163580 4164833 R PFAM: arsenic pump membrane protein; Citrate transporter; KEGG: bra:BRADO3240 arsenite permease; arsenic pump membrane protein complement(4163580..4164833) Rhodopseudomonas palustris TIE-1 6411557 YP_001992851.1 CDS Rpal_3878 NC_011004.1 4165111 4165320 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: nha:Nham_2750 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 4165111..4165320 Rhodopseudomonas palustris TIE-1 6411558 YP_001992852.1 CDS Rpal_3879 NC_011004.1 4165421 4165669 D KEGG: bra:BRADO0632 hypothetical protein; hypothetical protein 4165421..4165669 Rhodopseudomonas palustris TIE-1 6411559 YP_001992853.1 CDS Rpal_3880 NC_011004.1 4165713 4165910 D hypothetical protein 4165713..4165910 Rhodopseudomonas palustris TIE-1 6411560 YP_001992854.1 CDS Rpal_3881 NC_011004.1 4165900 4166322 R KEGG: cak:Caul_4714 hypothetical protein; hypothetical protein complement(4165900..4166322) Rhodopseudomonas palustris TIE-1 6411561 YP_001992855.1 CDS Rpal_3882 NC_011004.1 4166327 4166959 R PFAM: regulatory protein TetR; KEGG: bja:blr4230 transcriptional regulatory protein; TetR family transcriptional regulator complement(4166327..4166959) Rhodopseudomonas palustris TIE-1 6411562 YP_001992856.1 CDS Rpal_3883 NC_011004.1 4167056 4167706 D PFAM: O-methyltransferase family 3; KEGG: bte:BTH_II0913 O-methyltransferase; O-methyltransferase family protein 4167056..4167706 Rhodopseudomonas palustris TIE-1 6411563 YP_001992857.1 CDS Rpal_3884 NC_011004.1 4167851 4168132 D hypothetical protein 4167851..4168132 Rhodopseudomonas palustris TIE-1 6411564 YP_001992858.1 CDS Rpal_3885 NC_011004.1 4168068 4169216 R PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll5536 major facilitator superfamily transporter; major facilitator superfamily protein complement(4168068..4169216) Rhodopseudomonas palustris TIE-1 6411565 YP_001992859.1 CDS thrS NC_011004.1 4169409 4171472 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 4169409..4171472 Rhodopseudomonas palustris TIE-1 6411566 YP_001992860.1 CDS Rpal_3887 NC_011004.1 4171754 4172332 R KEGG: cak:Caul_2536 hypothetical protein; hypothetical protein complement(4171754..4172332) Rhodopseudomonas palustris TIE-1 6411567 YP_001992861.1 CDS Rpal_3888 NC_011004.1 4172669 4173178 D PFAM: nitroreductase; KEGG: bja:blr5540 hypothetical protein; nitroreductase 4172669..4173178 Rhodopseudomonas palustris TIE-1 6411568 YP_001992862.1 CDS Rpal_3889 NC_011004.1 4173230 4175104 R PFAM: Amidohydrolase 3; KEGG: sit:TM1040_2000 twin-arginine translocation pathway signal; amidohydrolase complement(4173230..4175104) Rhodopseudomonas palustris TIE-1 6411569 YP_001992863.1 CDS Rpal_3890 NC_011004.1 4175199 4177673 R KEGG: bja:bll5542 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(4175199..4177673) Rhodopseudomonas palustris TIE-1 6411570 YP_001992864.1 CDS Rpal_3891 NC_011004.1 4177884 4178945 R KEGG: nha:Nham_1651 hypothetical protein; hypothetical protein complement(4177884..4178945) Rhodopseudomonas palustris TIE-1 6411571 YP_001992865.1 CDS Rpal_3892 NC_011004.1 4179175 4180206 D PFAM: Patatin; KEGG: nha:Nham_1650 patatin; patatin 4179175..4180206 Rhodopseudomonas palustris TIE-1 6411572 YP_001992866.1 CDS Rpal_3893 NC_011004.1 4180226 4180441 R KEGG: bbt:BBta_7044 membrane protein of unknown function; hypothetical protein complement(4180226..4180441) Rhodopseudomonas palustris TIE-1 6411573 YP_001992867.1 CDS Rpal_3894 NC_011004.1 4180438 4181553 R PFAM: PepSY-associated TM helix domain protein; KEGG: bbt:BBta_7043 uncharacterized iron-regulated membrane protein; PepSY-associated TM helix domain-containing protein complement(4180438..4181553) Rhodopseudomonas palustris TIE-1 6411574 YP_001992868.1 CDS Rpal_3895 NC_011004.1 4181582 4183843 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbt:BBta_7042 hydroxamate-type ferrisiderophore receptor; TonB-dependent siderophore receptor complement(4181582..4183843) Rhodopseudomonas palustris TIE-1 6411575 YP_001992869.1 CDS Rpal_3896 NC_011004.1 4183993 4184628 D PFAM: regulatory protein TetR; KEGG: bbt:BBta_7041 transcriptional regulator, TetR family; TetR family transcriptional regulator 4183993..4184628 Rhodopseudomonas palustris TIE-1 6411576 YP_001992870.1 CDS Rpal_3897 NC_011004.1 4184650 4185078 R PFAM: CBS domain containing protein; KEGG: bja:bll5551 hypothetical protein; hypothetical protein complement(4184650..4185078) Rhodopseudomonas palustris TIE-1 6411577 YP_001992871.1 CDS Rpal_3898 NC_011004.1 4185316 4186086 R PFAM: rhomboid family protein; KEGG: nha:Nham_1648 rhomboid-like protein; rhomboid family protein complement(4185316..4186086) Rhodopseudomonas palustris TIE-1 6411578 YP_001992872.1 CDS Rpal_3899 NC_011004.1 4186571 4187140 D PFAM: protein of unknown function DUF1457; KEGG: nha:Nham_1646 hypothetical protein; hypothetical protein 4186571..4187140 Rhodopseudomonas palustris TIE-1 6411579 YP_001992873.1 CDS Rpal_3900 NC_011004.1 4187110 4187874 R KEGG: bja:blr0395 hypothetical protein; Crp/Fnr family transcriptional regulator complement(4187110..4187874) Rhodopseudomonas palustris TIE-1 6411580 YP_001992874.1 CDS Rpal_3901 NC_011004.1 4188314 4188925 D PFAM: type IV pilus assembly PilZ; KEGG: bja:blr5568 hypothetical protein; type IV pilus assembly PilZ 4188314..4188925 Rhodopseudomonas palustris TIE-1 6411581 YP_001992875.1 CDS Rpal_3902 NC_011004.1 4189257 4189877 D PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: bbt:BBta_5218 exported protein of unknown function; transglutaminase 4189257..4189877 Rhodopseudomonas palustris TIE-1 6411582 YP_001992876.1 CDS Rpal_3903 NC_011004.1 4192091 4192369 R hypothetical protein complement(4192091..4192369) Rhodopseudomonas palustris TIE-1 6411583 YP_001992877.1 CDS Rpal_3904 NC_011004.1 4192369 4192626 R hypothetical protein complement(4192369..4192626) Rhodopseudomonas palustris TIE-1 6411584 YP_001992878.1 CDS Rpal_3905 NC_011004.1 4193082 4193204 R hypothetical protein complement(4193082..4193204) Rhodopseudomonas palustris TIE-1 6411585 YP_001992879.1 CDS Rpal_3906 NC_011004.1 4193646 4194314 D KEGG: rru:Rru_A2638 hypothetical protein; hypothetical protein 4193646..4194314 Rhodopseudomonas palustris TIE-1 6411586 YP_001992880.1 CDS Rpal_3907 NC_011004.1 4194669 4194884 D hypothetical protein 4194669..4194884 Rhodopseudomonas palustris TIE-1 6411587 YP_001992881.1 CDS Rpal_3908 NC_011004.1 4196255 4196842 R PFAM: regulatory protein MarR; KEGG: bja:blr4984 transcriptional regulatory protein; MarR family transcriptional regulator complement(4196255..4196842) Rhodopseudomonas palustris TIE-1 6411588 YP_001992882.1 CDS Rpal_3909 NC_011004.1 4197367 4198866 D PFAM: porin; KEGG: bbt:BBta_3063 exported protein of unknown function with porin precursor domain; porin 4197367..4198866 Rhodopseudomonas palustris TIE-1 6411589 YP_001992883.1 CDS Rpal_3911 NC_011004.1 4199302 4199469 D KEGG: bra:BRADO2945 hypothetical protein; hypothetical protein 4199302..4199469 Rhodopseudomonas palustris TIE-1 6411591 YP_001992884.1 CDS Rpal_3912 NC_011004.1 4199499 4200029 R KEGG: bbt:BBta_5226 hypothetical protein; hypothetical protein complement(4199499..4200029) Rhodopseudomonas palustris TIE-1 6411592 YP_001992885.1 CDS Rpal_3913 NC_011004.1 4200089 4200421 R KEGG: nha:Nham_2576 hypothetical protein; hypothetical protein complement(4200089..4200421) Rhodopseudomonas palustris TIE-1 6411593 YP_001992886.1 CDS Rpal_3914 NC_011004.1 4200588 4201319 D KEGG: bra:BRADO2942 conserved hypothetical protein; exported protein; hypothetical protein 4200588..4201319 Rhodopseudomonas palustris TIE-1 6411594 YP_001992887.1 CDS Rpal_3915 NC_011004.1 4201336 4201554 R KEGG: nha:Nham_2578 hypothetical protein; hypothetical protein complement(4201336..4201554) Rhodopseudomonas palustris TIE-1 6411595 YP_001992888.1 CDS Rpal_3916 NC_011004.1 4201723 4202550 R KEGG: bja:bll5586 serine acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein; serine O-acetyltransferase complement(4201723..4202550) Rhodopseudomonas palustris TIE-1 6411596 YP_001992889.1 CDS Rpal_3917 NC_011004.1 4202771 4203526 R PFAM: alpha/beta hydrolase fold; KEGG: bra:BRADO2938 hydrolase; alpha/beta hydrolase fold protein complement(4202771..4203526) Rhodopseudomonas palustris TIE-1 6411597 YP_001992890.1 CDS Rpal_3918 NC_011004.1 4203696 4204844 R KEGG: bbt:BBta_5235 exported protein of unknown function; hypothetical protein complement(4203696..4204844) Rhodopseudomonas palustris TIE-1 6411598 YP_001992891.1 CDS Rpal_3919 NC_011004.1 4205050 4205295 D KEGG: bja:bsr5590 hypothetical protein; hypothetical protein 4205050..4205295 Rhodopseudomonas palustris TIE-1 6411599 YP_001992892.1 CDS Rpal_3920 NC_011004.1 4205314 4206507 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bja:blr5591 salicylate hydroxylase; FAD-binding monooxygenase 4205314..4206507 Rhodopseudomonas palustris TIE-1 6411600 YP_001992893.1 CDS Rpal_3921 NC_011004.1 4206548 4206952 R KEGG: bra:BRADO2934 conserved hypothetical protein; signal peptide; hypothetical protein complement(4206548..4206952) Rhodopseudomonas palustris TIE-1 6411601 YP_001992894.1 CDS Rpal_3922 NC_011004.1 4207116 4207544 D PFAM: UspA domain protein; KEGG: bpt:Bpet2477 universal stress family protein; UspA domain-containing protein 4207116..4207544 Rhodopseudomonas palustris TIE-1 6411602 YP_001992895.1 CDS Rpal_3923 NC_011004.1 4207641 4208501 D PFAM: protein of unknown function DUF23; KEGG: nha:Nham_1056 protein of unknown function DUF23; hypothetical protein 4207641..4208501 Rhodopseudomonas palustris TIE-1 6411603 YP_001992896.1 CDS Rpal_3924 NC_011004.1 4208560 4209018 R TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: hha:Hhal_0413 DNA mismatch endonuclease vsr; DNA mismatch endonuclease Vsr complement(4208560..4209018) Rhodopseudomonas palustris TIE-1 6411604 YP_001992897.1 CDS Rpal_3925 NC_011004.1 4209018 4210763 R PFAM: protein of unknown function DUF87; KEGG: tpe:Tpen_1572 protein of unknown function DUF87; hypothetical protein complement(4209018..4210763) Rhodopseudomonas palustris TIE-1 6411605 YP_001992898.1 CDS Rpal_3926 NC_011004.1 4210777 4212726 R KEGG: ret:RHE_PF00109 hypothetical protein; hypothetical protein complement(4210777..4212726) Rhodopseudomonas palustris TIE-1 6411606 YP_001992899.1 CDS Rpal_3927 NC_011004.1 4212723 4214225 R TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: ret:RHE_PF00108 probable DNA (cytosine-5-)-methyltransferase protein; DNA-cytosine methyltransferase complement(4212723..4214225) Rhodopseudomonas palustris TIE-1 6411607 YP_001992900.1 CDS Rpal_3928 NC_011004.1 4214967 4216154 D KEGG: bbt:BBta_5260 amidohydrolase family protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 4214967..4216154 Rhodopseudomonas palustris TIE-1 6411609 YP_001992901.1 CDS Rpal_3929 NC_011004.1 4216147 4217562 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 4216147..4217562 Rhodopseudomonas palustris TIE-1 6411610 YP_001992902.1 CDS Rpal_3930 NC_011004.1 4217694 4218584 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4217694..4218584 Rhodopseudomonas palustris TIE-1 6411611 YP_001992903.1 CDS Rpal_3932 NC_011004.1 4219412 4220401 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bra:BRADO5498 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase complement(4219412..4220401) Rhodopseudomonas palustris TIE-1 6411613 YP_001992904.1 CDS Rpal_3933 NC_011004.1 4220529 4221239 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bbt:BBta_5982 transcriptional regulatory protein, GntR family; GntR family transcriptional regulator 4220529..4221239 Rhodopseudomonas palustris TIE-1 6411614 YP_001992905.1 CDS Rpal_3934 NC_011004.1 4221264 4222985 R PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr3958 acetyl-coenzyme A synthetase; AMP-dependent synthetase and ligase complement(4221264..4222985) Rhodopseudomonas palustris TIE-1 6411615 YP_001992906.1 CDS Rpal_3935 NC_011004.1 4223146 4224033 R TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bbt:BBta_3581 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase complement(4223146..4224033) Rhodopseudomonas palustris TIE-1 6411616 YP_001992907.1 CDS Rpal_3936 NC_011004.1 4224067 4225140 R catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; 3-hydroxyisobutyryl-CoA hydrolase complement(4224067..4225140) Rhodopseudomonas palustris TIE-1 6411617 YP_001992908.1 CDS Rpal_3937 NC_011004.1 4225137 4226294 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: nha:Nham_2558 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(4225137..4226294) Rhodopseudomonas palustris TIE-1 6411618 YP_001992909.1 CDS Rpal_3938 NC_011004.1 4226316 4226711 R KEGG: xau:Xaut_2191 PilT protein domain protein; PilT protein domain-containing protein complement(4226316..4226711) Rhodopseudomonas palustris TIE-1 6411619 YP_001992910.1 CDS Rpal_3939 NC_011004.1 4226713 4226940 R KEGG: xau:Xaut_2192 hypothetical protein; hypothetical protein complement(4226713..4226940) Rhodopseudomonas palustris TIE-1 6411620 YP_001992911.1 CDS Rpal_3940 NC_011004.1 4226990 4228486 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bra:BRADO3137 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(4226990..4228486) Rhodopseudomonas palustris TIE-1 6411621 YP_001992912.1 CDS Rpal_3941 NC_011004.1 4228646 4229314 R PFAM: regulatory protein TetR; KEGG: bra:BRADO3136 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4228646..4229314) Rhodopseudomonas palustris TIE-1 6411622 YP_001992913.1 CDS Rpal_3942 NC_011004.1 4229388 4229963 R PFAM: thioesterase superfamily protein; KEGG: bja:blr3951 hypothetical protein; thioesterase superfamily protein complement(4229388..4229963) Rhodopseudomonas palustris TIE-1 6411623 YP_001992914.1 CDS Rpal_3943 NC_011004.1 4230106 4230876 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4230106..4230876 Rhodopseudomonas palustris TIE-1 6411624 YP_001992915.1 CDS Rpal_3944 NC_011004.1 4231001 4232287 D PFAM: major facilitator superfamily MFS_1; KEGG: bra:BRADO3133 transmembrane transport protein of the MFS family, monocarboxylate permease; major facilitator superfamily protein 4231001..4232287 Rhodopseudomonas palustris TIE-1 6411625 YP_001992916.1 CDS Rpal_3945 NC_011004.1 4232336 4233895 R PFAM: carboxyl transferase; KEGG: bja:blr3940 propionyl-CoA carboxylase beta chain; propionyl-CoA carboxylase complement(4232336..4233895) Rhodopseudomonas palustris TIE-1 6411626 YP_001992917.1 CDS Rpal_3946 NC_011004.1 4233804 4234769 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bbt:BBta_3572 transcriptional regulatory protein, IclR family; IclR family transcriptional regulator complement(4233804..4234769) Rhodopseudomonas palustris TIE-1 6411627 YP_001992918.1 CDS Rpal_3947 NC_011004.1 4235049 4235270 D PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: bja:bsl3938 biotinylated protein; biotin/lipoyl attachment domain-containing protein 4235049..4235270 Rhodopseudomonas palustris TIE-1 6411628 YP_001992919.1 CDS Rpal_3948 NC_011004.1 4235454 4236614 D TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bja:bll3937 hypothetical protein; TRAP transporter solute receptor, TAXI family 4235454..4236614 Rhodopseudomonas palustris TIE-1 6411629 YP_001992920.1 CDS Rpal_3949 NC_011004.1 4236642 4238708 D TIGRFAM: TRAP transporter 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:bll3936 hypothetical protein; TRAP transporter 4TM/12TM fusion protein 4236642..4238708 Rhodopseudomonas palustris TIE-1 6411630 YP_001992921.1 CDS Rpal_3950 NC_011004.1 4238829 4239383 D KEGG: nmu:Nmul_A1418 hypothetical protein; hypothetical protein 4238829..4239383 Rhodopseudomonas palustris TIE-1 6411631 YP_001992922.1 CDS Rpal_3951 NC_011004.1 4239439 4239804 R KEGG: bja:blr3928 hypothetical protein; hypothetical protein complement(4239439..4239804) Rhodopseudomonas palustris TIE-1 6411632 YP_001992923.1 CDS Rpal_3952 NC_011004.1 4239801 4240937 R KEGG: bbt:BBta_3567 thiolase; thiolase complement(4239801..4240937) Rhodopseudomonas palustris TIE-1 6411633 YP_001992924.1 CDS Rpal_3953 NC_011004.1 4241119 4242321 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbt:BBta_3565 formyl-CoA transferase; L-carnitine dehydratase/bile acid-inducible protein F complement(4241119..4242321) Rhodopseudomonas palustris TIE-1 6411634 YP_001992925.1 CDS Rpal_3954 NC_011004.1 4242529 4243410 D KEGG: sco:SCO4500 dehydratase; dehydratase 4242529..4243410 Rhodopseudomonas palustris TIE-1 6411635 YP_001992926.1 CDS Rpal_3955 NC_011004.1 4243630 4245156 R PFAM: AMP-dependent synthetase and ligase; KEGG: dsh:Dshi_0700 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(4243630..4245156) Rhodopseudomonas palustris TIE-1 6411636 YP_001992927.1 CDS Rpal_3956 NC_011004.1 4245178 4246347 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(4245178..4246347) Rhodopseudomonas palustris TIE-1 6411637 YP_001992928.1 CDS Rpal_3957 NC_011004.1 4246605 4247591 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bra:BRADO3109 UDP-glucose 4-epimerase; NAD-dependent epimerase/dehydratase complement(4246605..4247591) Rhodopseudomonas palustris TIE-1 6411638 YP_001992929.1 CDS Rpal_3958 NC_011004.1 4247768 4248694 R PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_3556 ABC transporter permease protein; ABC transporter inner membrane protein complement(4247768..4248694) Rhodopseudomonas palustris TIE-1 6411639 YP_001992930.1 CDS Rpal_3959 NC_011004.1 4248687 4249634 R PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_3555 ABC transporter permease protein; ABC transporter inner membrane protein complement(4248687..4249634) Rhodopseudomonas palustris TIE-1 6411640 YP_001992931.1 CDS Rpal_3960 NC_011004.1 4249865 4251190 R PFAM: extracellular solute-binding protein family 1; KEGG: bra:BRADO3106 ABC transporter periplasmic-binding protein; family 1 extracellular solute-binding protein complement(4249865..4251190) Rhodopseudomonas palustris TIE-1 6411641 YP_001992932.1 CDS Rpal_3961 NC_011004.1 4251267 4252331 R PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: bra:BRADO3105 ABC transporter ATP-binding protein; ABC transporter complement(4251267..4252331) Rhodopseudomonas palustris TIE-1 6411642 YP_001992933.1 CDS Rpal_3962 NC_011004.1 4252568 4254376 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 4252568..4254376 Rhodopseudomonas palustris TIE-1 6411643 YP_001992934.1 CDS Rpal_3963 NC_011004.1 4254558 4255292 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO3102 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR 4254558..4255292 Rhodopseudomonas palustris TIE-1 6411644 YP_001992935.1 CDS Rpal_3964 NC_011004.1 4255375 4256124 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_3549 3-oxoacyl-acyl carrier protein reductase; short-chain dehydrogenase/reductase SDR 4255375..4256124 Rhodopseudomonas palustris TIE-1 6411645 YP_001992936.1 CDS Rpal_3965 NC_011004.1 4256450 4257244 R TIGRFAM: TonB family protein; KEGG: nha:Nham_1517 TonB-like; TonB family protein complement(4256450..4257244) Rhodopseudomonas palustris TIE-1 6411646 YP_001992937.1 CDS Rpal_3966 NC_011004.1 4257349 4257798 R TIGRFAM: TonB system transport protein ExbD; PFAM: biopolymer transport protein ExbD/TolR; KEGG: nha:Nham_1516 biopolymer transport protein ExbD/TolR; TonB system transport protein ExbD complement(4257349..4257798) Rhodopseudomonas palustris TIE-1 6411647 YP_001992938.1 CDS Rpal_3967 NC_011004.1 4257802 4258713 R TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: bja:blr3906 biopolymer transport protein; tonB-system energizer ExbB complement(4257802..4258713) Rhodopseudomonas palustris TIE-1 6411648 YP_001992939.1 CDS Rpal_3968 NC_011004.1 4258710 4259399 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: bja:blr3905 hydroxylase; hydroxylase complement(4258710..4259399) Rhodopseudomonas palustris TIE-1 6411649 YP_001992940.1 CDS Rpal_3969 NC_011004.1 4259425 4261806 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_1513 TonB-dependent receptor; TonB-dependent siderophore receptor complement(4259425..4261806) Rhodopseudomonas palustris TIE-1 6411650 YP_001992941.1 CDS Rpal_3970 NC_011004.1 4262090 4262332 R KEGG: bbt:BBta_3539 hypothetical protein; hypothetical protein complement(4262090..4262332) Rhodopseudomonas palustris TIE-1 6411651 YP_001992942.1 CDS Rpal_3971 NC_011004.1 4262669 4263892 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: nha:Nham_1510 secretion protein HlyD; RND family efflux transporter MFP subunit 4262669..4263892 Rhodopseudomonas palustris TIE-1 6411652 YP_001992943.1 CDS Rpal_3972 NC_011004.1 4263895 4267032 D PFAM: acriflavin resistance protein; KEGG: nha:Nham_1509 acriflavin resistance protein; acriflavin resistance protein 4263895..4267032 Rhodopseudomonas palustris TIE-1 6411653 YP_001992944.1 CDS Rpal_3973 NC_011004.1 4267075 4267479 R PFAM: PilT protein domain protein; KEGG: rso:RSc3055 hypothetical protein; PilT protein domain-containing protein complement(4267075..4267479) Rhodopseudomonas palustris TIE-1 6411654 YP_001992945.1 CDS Rpal_3974 NC_011004.1 4267476 4267730 R PFAM: SpoVT/AbrB domain protein; KEGG: nmu:Nmul_A0985 transcriptional regulator/antitoxin, MazE; MazE family transcriptional regulator complement(4267476..4267730) Rhodopseudomonas palustris TIE-1 6411655 YP_001992946.1 CDS Rpal_3975 NC_011004.1 4268318 4269514 D TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: nha:Nham_2492 phage portal protein, HK97; phage portal protein, HK97 family 4268318..4269514 Rhodopseudomonas palustris TIE-1 6411657 YP_001992947.1 CDS Rpal_3976 NC_011004.1 4269511 4270215 D KEGG: rso:RSc1696 probable phage HK022 GP20-related protein; phage HK022 GP20-like protein 4269511..4270215 Rhodopseudomonas palustris TIE-1 6411658 YP_001992948.1 CDS Rpal_3977 NC_011004.1 4270215 4270541 D KEGG: nha:Nham_2491 hypothetical protein; hypothetical protein 4270215..4270541 Rhodopseudomonas palustris TIE-1 6411659 YP_001992949.1 CDS Rpal_3978 NC_011004.1 4270538 4270735 D hypothetical protein 4270538..4270735 Rhodopseudomonas palustris TIE-1 6411660 YP_001992950.1 CDS Rpal_3979 NC_011004.1 4270735 4271232 D TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: nha:Nham_2490 peptidase U35, phage prohead HK97; phage prohead protease, HK97 family 4270735..4271232 Rhodopseudomonas palustris TIE-1 6411661 YP_001992951.1 CDS Rpal_3980 NC_011004.1 4271235 4272383 D TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: rsp:RSP_2358 possible phage phi-C31 GP36-like protein / major capsid protein, HK97 family; phage major capsid protein, HK97 family 4271235..4272383 Rhodopseudomonas palustris TIE-1 6411662 YP_001992952.1 CDS Rpal_3981 NC_011004.1 4272389 4272958 D KEGG: nha:Nham_2487 hypothetical protein; hypothetical protein 4272389..4272958 Rhodopseudomonas palustris TIE-1 6411663 YP_001992953.1 CDS Rpal_3982 NC_011004.1 4272949 4273296 D PFAM: HNH endonuclease; KEGG: nwi:Nwi_1480 HNH endonuclease; HNH endonuclease 4272949..4273296 Rhodopseudomonas palustris TIE-1 6411664 YP_001992954.1 CDS Rpal_3983 NC_011004.1 4273298 4273720 D KEGG: nha:Nham_2485 hypothetical protein; hypothetical protein 4273298..4273720 Rhodopseudomonas palustris TIE-1 6411665 YP_001992955.1 CDS Rpal_3984 NC_011004.1 4273735 4274016 D TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: nha:Nham_2484 uncharacterized phage protein; hypothetical protein 4273735..4274016 Rhodopseudomonas palustris TIE-1 6411666 YP_001992956.1 CDS Rpal_3985 NC_011004.1 4274018 4274434 D KEGG: nha:Nham_2483 hypothetical protein; hypothetical protein 4274018..4274434 Rhodopseudomonas palustris TIE-1 6411667 YP_001992957.1 CDS Rpal_3986 NC_011004.1 4274434 4274754 D TIGRFAM: phage head-tail adaptor; KEGG: nha:Nham_2482 hypothetical protein; phage head-tail adaptor 4274434..4274754 Rhodopseudomonas palustris TIE-1 6411668 YP_001992958.1 CDS Rpal_3987 NC_011004.1 4274733 4275137 D hypothetical protein 4274733..4275137 Rhodopseudomonas palustris TIE-1 6411669 YP_001992959.1 CDS Rpal_3988 NC_011004.1 4275134 4275511 D TIGRFAM: phage terminase, small subunit, , P27 family; PFAM: terminase small subunit P27; KEGG: nwi:Nwi_1617 phage terminase, small subunit, , P27; phage terminase, small subunit, , P27 family 4275134..4275511 Rhodopseudomonas palustris TIE-1 6411670 YP_001992960.1 CDS Rpal_3989 NC_011004.1 4275486 4277108 D PFAM: Terminase; KEGG: nha:Nham_1726 phage terminase; terminase 4275486..4277108 Rhodopseudomonas palustris TIE-1 6411671 YP_001992961.1 CDS Rpal_3990 NC_011004.1 4277108 4277503 D TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: nha:Nham_2479 phage protein, HK97, GP10; phage protein, HK97 gp10 family 4277108..4277503 Rhodopseudomonas palustris TIE-1 6411672 YP_001992962.1 CDS Rpal_3991 NC_011004.1 4277500 4277832 D KEGG: nha:Nham_2478 hypothetical protein; hypothetical protein 4277500..4277832 Rhodopseudomonas palustris TIE-1 6411673 YP_001992963.1 CDS Rpal_3992 NC_011004.1 4277832 4280048 D KEGG: nha:Nham_2477 hypothetical protein; hypothetical protein 4277832..4280048 Rhodopseudomonas palustris TIE-1 6411674 YP_001992964.1 CDS Rpal_3993 NC_011004.1 4280153 4281001 D KEGG: nha:Nham_2138 hypothetical protein; hypothetical protein 4280153..4281001 Rhodopseudomonas palustris TIE-1 6411675 YP_001992965.1 CDS Rpal_3994 NC_011004.1 4281200 4281391 D hypothetical protein 4281200..4281391 Rhodopseudomonas palustris TIE-1 6411676 YP_001992966.1 CDS Rpal_3995 NC_011004.1 4281607 4282083 D hypothetical protein 4281607..4282083 Rhodopseudomonas palustris TIE-1 6411677 YP_001992967.1 CDS Rpal_3996 NC_011004.1 4282672 4283451 R KEGG: cdi:DIP0856 serine protease; hypothetical protein complement(4282672..4283451) Rhodopseudomonas palustris TIE-1 6411678 YP_001992968.1 CDS Rpal_3997 NC_011004.1 4283460 4285205 R PFAM: integrase family protein; KEGG: nha:Nham_2130 phage integrase; integrase family protein complement(4283460..4285205) Rhodopseudomonas palustris TIE-1 6411679 YP_001992969.1 CDS Rpal_3998 NC_011004.1 4285428 4285559 D hypothetical protein 4285428..4285559 Rhodopseudomonas palustris TIE-1 6411680 YP_001992970.1 CDS Rpal_3999 NC_011004.1 4285569 4286762 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_3863 formyl-CoA transferase; L-carnitine dehydratase/bile acid-inducible protein F complement(4285569..4286762) Rhodopseudomonas palustris TIE-1 6411681 YP_001992971.1 CDS Rpal_4000 NC_011004.1 4286872 4288083 R PFAM: extracellular ligand-binding receptor; KEGG: bja:blr7827 ABC transporter substrate-binding protein; extracellular ligand-binding receptor complement(4286872..4288083) Rhodopseudomonas palustris TIE-1 6411682 YP_001992972.1 CDS Rpal_4001 NC_011004.1 4288317 4288931 R PFAM: protein of unknown function DUF548; KEGG: oan:Oant_1046 protein of unknown function DUF548; hypothetical protein complement(4288317..4288931) Rhodopseudomonas palustris TIE-1 6411683 YP_001992973.1 CDS Rpal_4002 NC_011004.1 4288937 4290442 R KEGG: nha:Nham_2725 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(4288937..4290442) Rhodopseudomonas palustris TIE-1 6411684 YP_001992974.1 CDS Rpal_4003 NC_011004.1 4290657 4290857 R KEGG: bja:bsl6507 hypothetical protein; hypothetical protein complement(4290657..4290857) Rhodopseudomonas palustris TIE-1 6411685 YP_001992975.1 CDS Rpal_4004 NC_011004.1 4291100 4292026 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: nwi:Nwi_2348 HflC; HflC protein complement(4291100..4292026) Rhodopseudomonas palustris TIE-1 6411686 YP_001992976.1 CDS Rpal_4005 NC_011004.1 4292023 4293174 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: nwi:Nwi_2349 HflK; HflK protein complement(4292023..4293174) Rhodopseudomonas palustris TIE-1 6411687 YP_001992977.1 CDS Rpal_4006 NC_011004.1 4293319 4293861 R PFAM: dihydrofolate reductase region; KEGG: bbt:BBta_6098 dihydrofolate reductase; Dihydrofolate reductase complement(4293319..4293861) Rhodopseudomonas palustris TIE-1 6411688 YP_001992978.1 CDS thyA NC_011004.1 4293858 4294652 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(4293858..4294652) Rhodopseudomonas palustris TIE-1 6411689 YP_001992979.1 CDS Rpal_4008 NC_011004.1 4294825 4295832 R PFAM: conserved hypothetical protein; KEGG: bja:bll6513 hypothetical protein; hypothetical protein complement(4294825..4295832) Rhodopseudomonas palustris TIE-1 6411690 YP_001992980.1 CDS Rpal_4009 NC_011004.1 4295934 4297448 R PFAM: protein of unknown function DUF112 transmembrane; KEGG: bja:bll6514 hypothetical protein; hypothetical protein complement(4295934..4297448) Rhodopseudomonas palustris TIE-1 6411691 YP_001992981.1 CDS Rpal_4010 NC_011004.1 4297459 4297959 R PFAM: protein of unknown function DUF1468; KEGG: bra:BRADO5580 hypothetical protein; hypothetical protein complement(4297459..4297959) Rhodopseudomonas palustris TIE-1 6411692 YP_001992982.1 CDS Rpal_4011 NC_011004.1 4298032 4298562 R PFAM: Chromate transporter; KEGG: bja:bll6516 transmembrane protein; chromate transporter complement(4298032..4298562) Rhodopseudomonas palustris TIE-1 6411693 YP_001992983.1 CDS Rpal_4012 NC_011004.1 4298559 4299155 R PFAM: Chromate transporter; KEGG: bra:BRADO5582 chromate transport protein (ChrA-like); chromate transporter complement(4298559..4299155) Rhodopseudomonas palustris TIE-1 6411694 YP_001992984.1 CDS Rpal_4013 NC_011004.1 4299883 4300419 D PFAM: protein of unknown function DUF1321; KEGG: bbt:BBta_6105 hypothetical protein; hypothetical protein 4299883..4300419 Rhodopseudomonas palustris TIE-1 6411696 YP_001992985.1 CDS fumC NC_011004.1 4300530 4301957 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 4300530..4301957 Rhodopseudomonas palustris TIE-1 6411697 YP_001992986.1 CDS Rpal_4015 NC_011004.1 4302222 4302410 D KEGG: bbt:BBta_6107 hypothetical protein; hypothetical protein 4302222..4302410 Rhodopseudomonas palustris TIE-1 6411698 YP_001992987.1 CDS Rpal_4016 NC_011004.1 4302407 4302685 D KEGG: nha:Nham_2734 hypothetical protein; hypothetical protein 4302407..4302685 Rhodopseudomonas palustris TIE-1 6411699 YP_001992988.1 CDS Rpal_4017 NC_011004.1 4302706 4306530 R PFAM: AsmA family protein; KEGG: bja:bll6536 hypothetical protein; AsmA family protein complement(4302706..4306530) Rhodopseudomonas palustris TIE-1 6411700 YP_001992989.1 CDS Rpal_4018 NC_011004.1 4306666 4308093 R PFAM: FAD linked oxidase domain protein; KEGG: bja:bll6558 oxidoreductase; FAD linked oxidase domain-containing protein complement(4306666..4308093) Rhodopseudomonas palustris TIE-1 6411701 YP_001992990.1 CDS Rpal_4019 NC_011004.1 4308160 4308693 D KEGG: bra:BRADO5610 conserved hypothetical protein; thioesterase superfamily; hypothetical protein 4308160..4308693 Rhodopseudomonas palustris TIE-1 6411702 YP_001992991.1 CDS Rpal_4020 NC_011004.1 4308690 4308863 R PFAM: protein of unknown function DUF1328; KEGG: bbt:BBta_6140 membrane protein of unknown function; hypothetical protein complement(4308690..4308863) Rhodopseudomonas palustris TIE-1 6411703 YP_001992992.1 CDS Rpal_4021 NC_011004.1 4309177 4311723 D PFAM: UvrD/REP helicase; KEGG: nha:Nham_2739 UvrD/REP helicase; UvrD/REP helicase 4309177..4311723 Rhodopseudomonas palustris TIE-1 6411704 YP_001992993.1 CDS Rpal_4022 NC_011004.1 4311723 4312007 D PFAM: protein of unknown function UPF0150; KEGG: nha:Nham_0567 protein of unknown function UPF0150; hypothetical protein 4311723..4312007 Rhodopseudomonas palustris TIE-1 6411705 YP_001992994.1 CDS Rpal_4023 NC_011004.1 4312791 4313072 D PFAM: protein of unknown function UPF0150; KEGG: ccr:CC_3185 DNA-binding protein, CopG family; hypothetical protein 4312791..4313072 Rhodopseudomonas palustris TIE-1 6411706 YP_001992995.1 CDS Rpal_4024 NC_011004.1 4313367 4314287 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_2740 ABC transporter; ABC transporter 4313367..4314287 Rhodopseudomonas palustris TIE-1 6411707 YP_001992996.1 CDS Rpal_4025 NC_011004.1 4314290 4315051 D PFAM: ABC transporter; KEGG: bja:blr6578 ABC transporter permease protein; ABC transporter 4314290..4315051 Rhodopseudomonas palustris TIE-1 6411708 YP_001992997.1 CDS Rpal_4026 NC_011004.1 4315122 4315469 R KEGG: nwi:Nwi_2363 hypothetical protein; hypothetical protein complement(4315122..4315469) Rhodopseudomonas palustris TIE-1 6411709 YP_001992998.1 CDS Rpal_4027 NC_011004.1 4315720 4316502 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: nha:Nham_2743 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 4315720..4316502 Rhodopseudomonas palustris TIE-1 6411710 YP_001992999.1 CDS Rpal_4028 NC_011004.1 4316565 4318844 R KEGG: bra:BRADO5641 hypothetical protein; hypothetical protein complement(4316565..4318844) Rhodopseudomonas palustris TIE-1 6411711 YP_001993000.1 CDS Rpal_4029 NC_011004.1 4319005 4320615 D PFAM: FAD dependent oxidoreductase; KEGG: nha:Nham_2744 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4319005..4320615 Rhodopseudomonas palustris TIE-1 6411712 YP_001993001.1 CDS Rpal_4030 NC_011004.1 4320685 4320987 R hypothetical protein complement(4320685..4320987) Rhodopseudomonas palustris TIE-1 6411713 YP_001993002.1 CDS Rpal_4031 NC_011004.1 4321431 4322321 D PFAM: RNA methylase; methyltransferase small; ribosomal L11 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: bja:blr6588 ribosomal protein L11 methyltransferase; ribosomal L11 methyltransferase 4321431..4322321 Rhodopseudomonas palustris TIE-1 6411714 YP_001993003.1 CDS Rpal_4032 NC_011004.1 4322346 4322540 R hypothetical protein complement(4322346..4322540) Rhodopseudomonas palustris TIE-1 6411715 YP_001993004.1 CDS Rpal_4033 NC_011004.1 4322736 4324565 D PFAM: creatinase; peptidase M24; KEGG: bbt:BBta_6160 aminopeptidase P; peptidase M24 4322736..4324565 Rhodopseudomonas palustris TIE-1 6411716 YP_001993005.1 CDS Rpal_4034 NC_011004.1 4324939 4326225 D TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr6590 major facilitator superfamily transporter; Bcr/CflA subfamily drug resistance transporter 4324939..4326225 Rhodopseudomonas palustris TIE-1 6411717 YP_001993006.1 CDS Rpal_4035 NC_011004.1 4326362 4328509 R KEGG: nha:Nham_1290 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase; NAD-dependent DNA ligase complement(4326362..4328509) Rhodopseudomonas palustris TIE-1 6411718 YP_001993007.1 CDS Rpal_4036 NC_011004.1 4328704 4328943 D KEGG: bja:bsr6592 hypothetical protein; hypothetical protein 4328704..4328943 Rhodopseudomonas palustris TIE-1 6411719 YP_001993008.1 CDS Rpal_4037 NC_011004.1 4329098 4330786 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: nha:Nham_1289 DNA repair protein RecN; DNA repair protein RecN complement(4329098..4330786) Rhodopseudomonas palustris TIE-1 6411720 YP_001993009.1 CDS Rpal_4038 NC_011004.1 4330799 4331707 R TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: bbt:BBta_6164 hypothetical protein; outer membrane assembly lipoprotein YfiO complement(4330799..4331707) Rhodopseudomonas palustris TIE-1 6411721 YP_001993010.1 CDS lpxC NC_011004.1 4331934 4332896 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(4331934..4332896) Rhodopseudomonas palustris TIE-1 6411722 YP_001993011.1 CDS Rpal_4040 NC_011004.1 4333243 4335018 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(4333243..4335018) Rhodopseudomonas palustris TIE-1 6411723 YP_001993012.1 CDS Rpal_4041 NC_011004.1 4335112 4336434 R PFAM: cell division protein FtsA; KEGG: bra:BRADO5654 cell division protein with ATPase domain, involved in recruitment of FtsK to Z ring; cell division protein FtsA complement(4335112..4336434) Rhodopseudomonas palustris TIE-1 6411724 YP_001993013.1 CDS Rpal_4042 NC_011004.1 4336431 4337420 R PFAM: cell division protein FtsQ; polypeptide-transport-associated domain protein FtsQ-type; KEGG: bra:BRADO5655 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein complement(4336431..4337420) Rhodopseudomonas palustris TIE-1 6411725 YP_001993014.1 CDS Rpal_4043 NC_011004.1 4337739 4338728 R PFAM: protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; KEGG: nwi:Nwi_1055 D-alanine--D-alanine ligase; D-alanine--D-alanine ligase complement(4337739..4338728) Rhodopseudomonas palustris TIE-1 6411726 YP_001993015.1 CDS Rpal_4044 NC_011004.1 4338838 4340166 R KEGG: nha:Nham_2630 hypothetical protein; hypothetical protein complement(4338838..4340166) Rhodopseudomonas palustris TIE-1 6411727 YP_001993016.1 CDS Rpal_4045 NC_011004.1 4340396 4341217 D KEGG: mex:Mext_0655 hypothetical protein; hypothetical protein 4340396..4341217 Rhodopseudomonas palustris TIE-1 6411728 YP_001993017.1 CDS murB NC_011004.1 4341275 4342204 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(4341275..4342204) Rhodopseudomonas palustris TIE-1 6411729 YP_001993018.1 CDS murC NC_011004.1 4342290 4343693 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(4342290..4343693) Rhodopseudomonas palustris TIE-1 6411730 YP_001993019.1 CDS murG NC_011004.1 4343830 4344930 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(4343830..4344930) Rhodopseudomonas palustris TIE-1 6411731 YP_001993020.1 CDS Rpal_4049 NC_011004.1 4344935 4346077 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: bja:bll6603 cell division protein; cell division protein FtsW complement(4344935..4346077) Rhodopseudomonas palustris TIE-1 6411732 YP_001993021.1 CDS murD NC_011004.1 4346223 4347632 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(4346223..4347632) Rhodopseudomonas palustris TIE-1 6411733 YP_001993022.1 CDS mraY NC_011004.1 4347820 4348905 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(4347820..4348905) Rhodopseudomonas palustris TIE-1 6411734 YP_001993023.1 CDS Rpal_4052 NC_011004.1 4348916 4350355 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: nha:Nham_1275 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase complement(4348916..4350355) Rhodopseudomonas palustris TIE-1 6411735 YP_001993024.1 CDS murE NC_011004.1 4350352 4351809 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(4350352..4351809) Rhodopseudomonas palustris TIE-1 6411736 YP_001993025.1 CDS Rpal_4054 NC_011004.1 4351922 4353676 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: nha:Nham_1273 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase complement(4351922..4353676) Rhodopseudomonas palustris TIE-1 6411737 YP_001993026.1 CDS Rpal_4055 NC_011004.1 4353673 4354056 R KEGG: nwi:Nwi_1044 hypothetical protein; hypothetical protein complement(4353673..4354056) Rhodopseudomonas palustris TIE-1 6411738 YP_001993027.1 CDS mraW NC_011004.1 4354053 4355051 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: bbt:BBta_6182 S-adenosyl-dependent methyl transferase; S-adenosyl-methyltransferase MraW complement(4354053..4355051) Rhodopseudomonas palustris TIE-1 6411739 YP_001993028.1 CDS Rpal_4057 NC_011004.1 4355550 4356416 D PFAM: peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: bja:blr6611 amidase; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 4355550..4356416 Rhodopseudomonas palustris TIE-1 6411740 YP_001993029.1 CDS Rpal_4058 NC_011004.1 4356988 4357557 R PFAM: filamentation induced by cAMP protein Fic; KEGG: pla:Plav_0312 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(4356988..4357557) Rhodopseudomonas palustris TIE-1 6411742 YP_001993030.1 CDS Rpal_4059 NC_011004.1 4357559 4357759 R hypothetical protein complement(4357559..4357759) Rhodopseudomonas palustris TIE-1 6411743 YP_001993031.1 CDS Rpal_4060 NC_011004.1 4357808 4359400 R TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_6187 multidrug resistance protein B; EmrB/QacA subfamily drug resistance transporter complement(4357808..4359400) Rhodopseudomonas palustris TIE-1 6411744 YP_001993032.1 CDS Rpal_4061 NC_011004.1 4359551 4360819 R PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_6188 multidrug resistance protein A; secretion protein HlyD family protein complement(4359551..4360819) Rhodopseudomonas palustris TIE-1 6411745 YP_001993033.1 CDS Rpal_4062 NC_011004.1 4361000 4361650 D PFAM: regulatory protein TetR; KEGG: bja:blr6623 transcriptional regulatory protein; TetR family transcriptional regulator 4361000..4361650 Rhodopseudomonas palustris TIE-1 6411746 YP_001993034.1 CDS Rpal_4063 NC_011004.1 4361662 4362903 R PFAM: Extensin family protein; KEGG: bja:bll6625 hypothetical protein; extensin family protein complement(4361662..4362903) Rhodopseudomonas palustris TIE-1 6411747 YP_001993035.1 CDS Rpal_4064 NC_011004.1 4363027 4364982 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bra:BRADO0729 methyl-accepting chemotaxis protein (chemoreceptor); methyl-accepting chemotaxis sensory transducer complement(4363027..4364982) Rhodopseudomonas palustris TIE-1 6411748 YP_001993036.1 CDS Rpal_4065 NC_011004.1 4365176 4365415 D hypothetical protein 4365176..4365415 Rhodopseudomonas palustris TIE-1 6411749 YP_001993037.1 CDS Rpal_4066 NC_011004.1 4365448 4368693 R TIGRFAM: polymorphic outer membrane protein; outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: nha:Nham_3087 outer membrane autotransporter barrel; outer membrane autotransporter barrel domain-containing protein complement(4365448..4368693) Rhodopseudomonas palustris TIE-1 6411750 YP_001993038.1 CDS Rpal_4067 NC_011004.1 4368871 4369509 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:bll0962 phosphoglycolate phosphatase; HAD-superfamily hydrolase 4368871..4369509 Rhodopseudomonas palustris TIE-1 6411751 YP_001993039.1 CDS Rpal_4068 NC_011004.1 4369742 4371643 D PFAM: cobalamin B12-binding domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dol:Dole_1742 radical SAM domain protein; radical SAM domain-containing protein 4369742..4371643 Rhodopseudomonas palustris TIE-1 6411752 YP_001993040.1 CDS Rpal_4069 NC_011004.1 4371640 4372359 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dge:Dgeo_0818 short chain dehydrogenase; short chain dehydrogenase 4371640..4372359 Rhodopseudomonas palustris TIE-1 6411753 YP_001993041.1 CDS Rpal_4070 NC_011004.1 4372356 4373183 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xau:Xaut_1138 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4372356..4373183 Rhodopseudomonas palustris TIE-1 6411754 YP_001993042.1 CDS Rpal_4071 NC_011004.1 4373195 4374247 R TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: mes:Meso_0323 bile acid:sodium symporter; arsenical-resistance protein complement(4373195..4374247) Rhodopseudomonas palustris TIE-1 6411755 YP_001993043.1 CDS Rpal_4072 NC_011004.1 4374374 4374799 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: oan:Oant_3199 arsenate reductase; arsenate reductase complement(4374374..4374799) Rhodopseudomonas palustris TIE-1 6411756 YP_001993044.1 CDS Rpal_4073 NC_011004.1 4374799 4375326 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: xau:Xaut_0875 protein tyrosine phosphatase; protein tyrosine phosphatase complement(4374799..4375326) Rhodopseudomonas palustris TIE-1 6411757 YP_001993045.1 CDS Rpal_4074 NC_011004.1 4375319 4375675 R PFAM: regulatory protein ArsR; KEGG: bja:bll3087 transcriptional regulatory protein; ArsR family transcriptional regulator complement(4375319..4375675) Rhodopseudomonas palustris TIE-1 6411758 YP_001993046.1 CDS Rpal_4075 NC_011004.1 4375730 4375966 R KEGG: xau:Xaut_3943 thiol-disulfide isomerase and thioredoxin; thiol-disulfide isomerase and thioredoxin complement(4375730..4375966) Rhodopseudomonas palustris TIE-1 6411759 YP_001993047.1 CDS Rpal_4076 NC_011004.1 4375978 4377027 R PFAM: permease; KEGG: xau:Xaut_3419 permease; permease complement(4375978..4377027) Rhodopseudomonas palustris TIE-1 6411760 YP_001993048.1 CDS Rpal_4077 NC_011004.1 4377024 4377323 R PFAM: regulatory protein ArsR; KEGG: xau:Xaut_3418 regulatory protein ArsR; ArsR family transcriptional regulator complement(4377024..4377323) Rhodopseudomonas palustris TIE-1 6411761 YP_001993049.1 CDS Rpal_4078 NC_011004.1 4377489 4378274 D PFAM: protein of unknown function DUF81; KEGG: xau:Xaut_3951 protein of unknown function DUF81; hypothetical protein 4377489..4378274 Rhodopseudomonas palustris TIE-1 6411762 YP_001993050.1 CDS Rpal_4079 NC_011004.1 4378512 4378868 D PFAM: regulatory protein MarR; regulatory protein ArsR; KEGG: sus:Acid_4411 transcriptional regulator, ArsR family; MarR family transcriptional regulator 4378512..4378868 Rhodopseudomonas palustris TIE-1 6411763 YP_001993051.1 CDS arsM NC_011004.1 4378858 4379709 D in Rhodopseudomonas palustris this protein confers resistance to arsenite; catalyzes the formation of a number of methylated intermediates from arsenite and SAM producing trimethylarsine; arsenite S-adenosylmethyltransferase 4378858..4379709 Rhodopseudomonas palustris TIE-1 6411764 YP_001993052.1 CDS Rpal_4081 NC_011004.1 4379928 4380128 R KEGG: bbt:BBta_2412 hypothetical protein; hypothetical protein complement(4379928..4380128) Rhodopseudomonas palustris TIE-1 6411765 YP_001993053.1 CDS Rpal_4082 NC_011004.1 4380361 4380759 R KEGG: nha:Nham_3319 hypothetical protein; hypothetical protein complement(4380361..4380759) Rhodopseudomonas palustris TIE-1 6411766 YP_001993054.1 CDS tnaA NC_011004.1 4381010 4382458 R tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase complement(4381010..4382458) Rhodopseudomonas palustris TIE-1 6411767 YP_001993055.1 CDS Rpal_4084 NC_011004.1 4382729 4383448 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr6636 ATP synthase subunit; ErfK/YbiS/YcfS/YnhG family protein 4382729..4383448 Rhodopseudomonas palustris TIE-1 6411768 YP_001993056.1 CDS Rpal_4085 NC_011004.1 4383638 4383976 D hypothetical protein 4383638..4383976 Rhodopseudomonas palustris TIE-1 6411769 YP_001993057.1 CDS Rpal_4086 NC_011004.1 4384133 4385695 D KEGG: nha:Nham_2886 hypothetical protein; hypothetical protein 4384133..4385695 Rhodopseudomonas palustris TIE-1 6411770 YP_001993058.1 CDS Rpal_4087 NC_011004.1 4385790 4386329 R PFAM: PRC-barrel domain protein; KEGG: bbt:BBta_6218 exported protein of unknown function; PRC-barrel domain-containing protein complement(4385790..4386329) Rhodopseudomonas palustris TIE-1 6411771 YP_001993059.1 CDS Rpal_4088 NC_011004.1 4386617 4387159 R KEGG: bja:bll6650 hypothetical protein; hypothetical protein complement(4386617..4387159) Rhodopseudomonas palustris TIE-1 6411772 YP_001993060.1 CDS Rpal_4089 NC_011004.1 4387327 4388049 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bbt:BBta_6216 two component response transcriptional regulator (OmpR family); winged helix family two component transcriptional regulator 4387327..4388049 Rhodopseudomonas palustris TIE-1 6411773 YP_001993061.1 CDS Rpal_4090 NC_011004.1 4388046 4389380 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bja:blr6652 two-component hybrid sensor and regulator; integral membrane sensor signal transduction histidine kinase 4388046..4389380 Rhodopseudomonas palustris TIE-1 6411774 YP_001993062.1 CDS Rpal_4091 NC_011004.1 4389399 4390877 R KEGG: bra:BRADO5707 hypothetical protein; hypothetical protein complement(4389399..4390877) Rhodopseudomonas palustris TIE-1 6411775 YP_001993063.1 CDS Rpal_4092 NC_011004.1 4391200 4392306 D PFAM: FAD dependent oxidoreductase; KEGG: bja:blr6655 thiamine biosynthesis oxidoreductase; FAD dependent oxidoreductase 4391200..4392306 Rhodopseudomonas palustris TIE-1 6411776 YP_001993064.1 CDS Rpal_4093 NC_011004.1 4392297 4392494 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: bbt:BBta_6223 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 4392297..4392494 Rhodopseudomonas palustris TIE-1 6411777 YP_001993065.1 CDS thiG NC_011004.1 4392747 4393529 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4392747..4393529 Rhodopseudomonas palustris TIE-1 6411778 YP_001993066.1 CDS Rpal_4095 NC_011004.1 4393516 4394124 D PFAM: thiamine monophosphate synthase; KEGG: nwi:Nwi_2467 thiamine monophosphate synthase; thiamine-phosphate diphosphorylase 4393516..4394124 Rhodopseudomonas palustris TIE-1 6411779 YP_001993067.1 CDS Rpal_4096 NC_011004.1 4394348 4396273 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 4394348..4396273 Rhodopseudomonas palustris TIE-1 6411780 YP_001993068.1 CDS Rpal_4097 NC_011004.1 4396622 4397551 D KEGG: nha:Nham_2360 hypothetical protein; hypothetical protein 4396622..4397551 Rhodopseudomonas palustris TIE-1 6411781 YP_001993069.1 CDS Rpal_4098 NC_011004.1 4397819 4398862 D KEGG: rle:pRL110097 hypothetical protein; hypothetical protein 4397819..4398862 Rhodopseudomonas palustris TIE-1 6411782 YP_001993070.1 CDS Rpal_4099 NC_011004.1 4399015 4399413 R PFAM: protein of unknown function DUF1486; KEGG: bxe:Bxe_B0561 hypothetical protein; hypothetical protein complement(4399015..4399413) Rhodopseudomonas palustris TIE-1 6411783 YP_001993071.1 CDS Rpal_4100 NC_011004.1 4399603 4399836 R KEGG: rba:RB3982 hypothetical protein; hypothetical protein complement(4399603..4399836) Rhodopseudomonas palustris TIE-1 6411784 YP_001993072.1 CDS Rpal_4101 NC_011004.1 4399957 4400487 R KEGG: ecs:ECs4262 hypothetical protein; hypothetical protein complement(4399957..4400487) Rhodopseudomonas palustris TIE-1 6411785 YP_001993073.1 CDS Rpal_4102 NC_011004.1 4400475 4400813 R PFAM: Protein of unknown function DUF1778; KEGG: acr:Acry_0280 uncharacterized protein-like protein; hypothetical protein complement(4400475..4400813) Rhodopseudomonas palustris TIE-1 6411786 YP_001993074.1 CDS Rpal_4103 NC_011004.1 4400991 4401770 D hypothetical protein 4400991..4401770 Rhodopseudomonas palustris TIE-1 6411787 YP_001993075.1 CDS Rpal_4104 NC_011004.1 4401952 4402464 R KEGG: afw:Anae109_4320 hypothetical protein; hypothetical protein complement(4401952..4402464) Rhodopseudomonas palustris TIE-1 6411788 YP_001993076.1 CDS Rpal_4105 NC_011004.1 4402774 4403238 R KEGG: azc:AZC_4607 hypothetical protein; hypothetical protein complement(4402774..4403238) Rhodopseudomonas palustris TIE-1 6411789 YP_001993077.1 CDS Rpal_4106 NC_011004.1 4404448 4404732 D hypothetical protein 4404448..4404732 Rhodopseudomonas palustris TIE-1 6411790 YP_001993078.1 CDS Rpal_4107 NC_011004.1 4404894 4405082 D hypothetical protein 4404894..4405082 Rhodopseudomonas palustris TIE-1 6411791 YP_001993079.1 CDS Rpal_4108 NC_011004.1 4405100 4406392 R PFAM: monooxygenase FAD-binding; KEGG: bbt:BBta_7587 hypothetical protein; hypothetical protein complement(4405100..4406392) Rhodopseudomonas palustris TIE-1 6411792 YP_001993080.1 CDS Rpal_4109 NC_011004.1 4406689 4407243 D hypothetical protein 4406689..4407243 Rhodopseudomonas palustris TIE-1 6411793 YP_001993081.1 CDS Rpal_4110 NC_011004.1 4407236 4407664 R KEGG: nha:Nham_2898 hypothetical protein; hypothetical protein complement(4407236..4407664) Rhodopseudomonas palustris TIE-1 6411794 YP_001993082.1 CDS Rpal_4111 NC_011004.1 4407867 4408250 D PFAM: Endoribonuclease L-PSP; KEGG: bja:blr6667 hypothetical protein; endoribonuclease L-PSP 4407867..4408250 Rhodopseudomonas palustris TIE-1 6411795 YP_001993083.1 CDS Rpal_4112 NC_011004.1 4408470 4409561 D KEGG: bbt:BBta_4169 hypothetical protein; hypothetical protein 4408470..4409561 Rhodopseudomonas palustris TIE-1 6411796 YP_001993084.1 CDS Rpal_4113 NC_011004.1 4409667 4410305 D PFAM: Collagen triple helix repeat; KEGG: bbt:BBta_6234 collagen-like protein; Collagen triple helix repeat 4409667..4410305 Rhodopseudomonas palustris TIE-1 6411797 YP_001993085.1 CDS Rpal_4114 NC_011004.1 4410348 4410614 R KEGG: bra:BRADO5723 hypothetical protein; hypothetical protein complement(4410348..4410614) Rhodopseudomonas palustris TIE-1 6411798 YP_001993086.1 CDS Rpal_4115 NC_011004.1 4410769 4411398 D PFAM: SOUL heme-binding protein; KEGG: mrd:Mrad2831_4266 SOUL heme-binding protein; SOUL heme-binding protein 4410769..4411398 Rhodopseudomonas palustris TIE-1 6411799 YP_001993087.1 CDS Rpal_4116 NC_011004.1 4411413 4412618 R PFAM: protein of unknown function DUF1501; KEGG: mrd:Mrad2831_5538 protein of unknown function DUF1501; hypothetical protein complement(4411413..4412618) Rhodopseudomonas palustris TIE-1 6411800 YP_001993088.1 CDS Rpal_4117 NC_011004.1 4412605 4414185 R PFAM: Protein of unknown function DUF1800; KEGG: azc:AZC_3730 hypothetical protein; hypothetical protein complement(4412605..4414185) Rhodopseudomonas palustris TIE-1 6411801 YP_001993089.1 CDS Rpal_4118 NC_011004.1 4414532 4416235 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_2901 methyl-accepting chemotaxis receptor/sensory transducer precursor (chemoreceptor); methyl-accepting chemotaxis sensory transducer 4414532..4416235 Rhodopseudomonas palustris TIE-1 6411802 YP_001993090.1 CDS Rpal_4119 NC_011004.1 4416372 4416914 D hypothetical protein 4416372..4416914 Rhodopseudomonas palustris TIE-1 6411803 YP_001993091.1 CDS Rpal_4120 NC_011004.1 4416969 4417451 R TIGRFAM: bacterioferritin; PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: xau:Xaut_3765 bacterioferritin; bacterioferritin complement(4416969..4417451) Rhodopseudomonas palustris TIE-1 6411804 YP_001993092.1 CDS Rpal_4121 NC_011004.1 4417574 4417774 R KEGG: nwi:Nwi_2476 bacterioferritin; bacterioferritin complement(4417574..4417774) Rhodopseudomonas palustris TIE-1 6411805 YP_001993093.1 CDS Rpal_4122 NC_011004.1 4418173 4418532 D KEGG: bja:blr6682 hypothetical protein; hypothetical protein 4418173..4418532 Rhodopseudomonas palustris TIE-1 6411806 YP_001993094.1 CDS Rpal_4123 NC_011004.1 4418753 4419037 D KEGG: nha:Nham_2906 hypothetical protein; hypothetical protein 4418753..4419037 Rhodopseudomonas palustris TIE-1 6411807 YP_001993095.1 CDS Rpal_4124 NC_011004.1 4419114 4420358 R TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: bja:bll6684 transglycosylase; lytic murein transglycosylase complement(4419114..4420358) Rhodopseudomonas palustris TIE-1 6411808 YP_001993096.1 CDS Rpal_4125 NC_011004.1 4420358 4420948 R PFAM: conserved hypothetical protein; KEGG: bbt:BBta_6250 hypothetical protein; hypothetical protein complement(4420358..4420948) Rhodopseudomonas palustris TIE-1 6411809 YP_001993097.1 CDS Rpal_4126 NC_011004.1 4421123 4421893 R catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate; trans-aconitate 2-methyltransferase complement(4421123..4421893) Rhodopseudomonas palustris TIE-1 6411810 YP_001993098.1 CDS Rpal_4127 NC_011004.1 4421993 4422292 D PFAM: protein of unknown function DUF497; KEGG: nwi:Nwi_2483 protein of unknown function DUF497; hypothetical protein 4421993..4422292 Rhodopseudomonas palustris TIE-1 6411811 YP_001993099.1 CDS Rpal_4128 NC_011004.1 4422279 4422536 D KEGG: nwi:Nwi_2484 hypothetical protein; hypothetical protein 4422279..4422536 Rhodopseudomonas palustris TIE-1 6411812 YP_001993100.1 CDS Rpal_4129 NC_011004.1 4422753 4424402 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(4422753..4424402) Rhodopseudomonas palustris TIE-1 6411813 YP_001993101.1 CDS Rpal_4130 NC_011004.1 4424643 4424843 D KEGG: bja:bsr6686 hypothetical protein; hypothetical protein 4424643..4424843 Rhodopseudomonas palustris TIE-1 6411814 YP_001993102.1 CDS Rpal_4131 NC_011004.1 4424923 4426188 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:bll6688 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein complement(4424923..4426188) Rhodopseudomonas palustris TIE-1 6411815 YP_001993103.1 CDS Rpal_4132 NC_011004.1 4426598 4427596 D KEGG: lma:LmjF35.0290 hypothetical protein, conserved; hypothetical protein 4426598..4427596 Rhodopseudomonas palustris TIE-1 6411816 YP_001993104.1 CDS Rpal_4133 NC_011004.1 4427609 4428469 R PFAM: rhodanese domain protein; KEGG: nha:Nham_2916 3-mercaptopyruvate sulfurtransferase; rhodanese domain-containing protein complement(4427609..4428469) Rhodopseudomonas palustris TIE-1 6411817 YP_001993105.1 CDS Rpal_4134 NC_011004.1 4428587 4429003 R SMART: rhodanese domain protein; KEGG: bja:bll6691 hypothetical protein; rhodanese domain-containing protein complement(4428587..4429003) Rhodopseudomonas palustris TIE-1 6411818 YP_001993106.1 CDS Rpal_4135 NC_011004.1 4429150 4430325 R KEGG: bra:BRADO5746 hypothetical protein; hypothetical protein complement(4429150..4430325) Rhodopseudomonas palustris TIE-1 6411819 YP_001993107.1 CDS Rpal_4136 NC_011004.1 4430534 4432426 D KEGG: bja:bll1362 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 4430534..4432426 Rhodopseudomonas palustris TIE-1 6411820 YP_001993108.1 CDS Rpal_4137 NC_011004.1 4432596 4432850 D PFAM: Transglycosylase-associated protein; KEGG: nha:Nham_2918 transglycosylase-associated protein; transglycosylase 4432596..4432850 Rhodopseudomonas palustris TIE-1 6411821 YP_001993109.1 CDS Rpal_4138 NC_011004.1 4432965 4433807 D PFAM: ATPase AAA; SMART: ATPase AAA; KEGG: bbt:BBta_6260 ATPase, AAA family; ATPase AAA 4432965..4433807 Rhodopseudomonas palustris TIE-1 6411822 YP_001993110.1 CDS Rpal_4139 NC_011004.1 4434412 4435455 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bra:BRADO1867 vanillate O-demethylase oxygenase, iron-sulfur subunit (modular protein=subunit from monooxygenase) (VanA-like); vanillate monooxygenase 4434412..4435455 Rhodopseudomonas palustris TIE-1 6411823 YP_001993111.1 CDS Rpal_4140 NC_011004.1 4435459 4436214 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bja:blr2391 transcriptional regulatory protein; GntR family transcriptional regulator 4435459..4436214 Rhodopseudomonas palustris TIE-1 6411824 YP_001993112.1 CDS Rpal_4141 NC_011004.1 4436245 4437237 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: bja:blr2392 dioxygenase subunit; oxidoreductase FAD/NAD(P)-binding domain-containing protein 4436245..4437237 Rhodopseudomonas palustris TIE-1 6411825 YP_001993113.1 CDS Rpal_4142 NC_011004.1 4437339 4437623 R hypothetical protein complement(4437339..4437623) Rhodopseudomonas palustris TIE-1 6411826 YP_001993114.1 CDS Rpal_4143 NC_011004.1 4437764 4438360 R PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_2919 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(4437764..4438360) Rhodopseudomonas palustris TIE-1 6411827 YP_001993115.1 CDS Rpal_4144 NC_011004.1 4438509 4439438 R PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: bra:BRADO5762 gluconolactonase; SMP-30/gluconolaconase/LRE domain-containing protein complement(4438509..4439438) Rhodopseudomonas palustris TIE-1 6411828 YP_001993116.1 CDS Rpal_4145 NC_011004.1 4439590 4439958 R KEGG: bbt:BBta_6276 exported protein of unknown function; hypothetical protein complement(4439590..4439958) Rhodopseudomonas palustris TIE-1 6411829 YP_001993117.1 CDS Rpal_4146 NC_011004.1 4440074 4440418 D PFAM: excinuclease ABC subunit C; KEGG: pub:SAR11_1011 excinuclease ABC; excinuclease ABC subunit C 4440074..4440418 Rhodopseudomonas palustris TIE-1 6411830 YP_001993118.1 CDS Rpal_4147 NC_011004.1 4441258 4441512 R KEGG: bra:BRADO5787 hypothetical protein; hypothetical protein complement(4441258..4441512) Rhodopseudomonas palustris TIE-1 6411831 YP_001993119.1 CDS Rpal_4148 NC_011004.1 4441509 4441985 R PFAM: glutathione peroxidase; KEGG: bra:BRADO5788 glutathione peroxidase; glutathione peroxidase complement(4441509..4441985) Rhodopseudomonas palustris TIE-1 6411832 YP_001993120.1 CDS Rpal_4149 NC_011004.1 4442004 4443401 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(4442004..4443401) Rhodopseudomonas palustris TIE-1 6411833 YP_001993121.1 CDS Rpal_4150 NC_011004.1 4443473 4443730 R KEGG: nha:Nham_3268 hypothetical protein; hypothetical protein complement(4443473..4443730) Rhodopseudomonas palustris TIE-1 6411834 YP_001993122.1 CDS Rpal_4151 NC_011004.1 4443867 4444856 D KEGG: bbt:BBta_6305 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 4443867..4444856 Rhodopseudomonas palustris TIE-1 6411835 YP_001993123.1 CDS Rpal_4152 NC_011004.1 4444866 4445639 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_4730 short-chain dehydrogenases/reductases (SDR) family protein; short-chain dehydrogenase/reductase SDR complement(4444866..4445639) Rhodopseudomonas palustris TIE-1 6411836 YP_001993124.1 CDS Rpal_4153 NC_011004.1 4445737 4446219 D PFAM: helix-turn-helix HxlR type; KEGG: bja:blr5109 transcriptional regulatory protein; HxlR family transcriptional regulator 4445737..4446219 Rhodopseudomonas palustris TIE-1 6411837 YP_001993125.1 CDS Rpal_4154 NC_011004.1 4446239 4446913 D KEGG: bja:blr6741 hypothetical protein; hypothetical protein 4446239..4446913 Rhodopseudomonas palustris TIE-1 6411838 YP_001993126.1 CDS Rpal_4155 NC_011004.1 4447129 4449981 D catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; catalyzes isomerization of glucose 6-phosphate and fructose 6-phosphate; bifunctional transaldolase/phosoglucose isomerase 4447129..4449981 Rhodopseudomonas palustris TIE-1 6411839 YP_001993127.1 CDS Rpal_4156 NC_011004.1 4450168 4451208 D similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 4450168..4451208 Rhodopseudomonas palustris TIE-1 6411840 YP_001993128.1 CDS Rpal_4157 NC_011004.1 4451205 4452719 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 4451205..4452719 Rhodopseudomonas palustris TIE-1 6411841 YP_001993129.1 CDS Rpal_4158 NC_011004.1 4452722 4453462 D TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: bja:blr6761 6-phosphogluconolactonase; 6-phosphogluconolactonase 4452722..4453462 Rhodopseudomonas palustris TIE-1 6411842 YP_001993130.1 CDS Rpal_4159 NC_011004.1 4453446 4453994 D KEGG: bbt:BBta_6318 6-phosphogluconolactonase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; thermoresistant glucokinase family carbohydrate kinase 4453446..4453994 Rhodopseudomonas palustris TIE-1 6411843 YP_001993131.1 CDS Rpal_4160 NC_011004.1 4454118 4454936 D TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: bja:blr6763 hypothetical protein; cof family hydrolase 4454118..4454936 Rhodopseudomonas palustris TIE-1 6411844 YP_001993132.1 CDS Rpal_4161 NC_011004.1 4454933 4456741 R PFAM: glycoside hydrolase 15-related; KEGG: bja:bll6764 hypothetical protein; glycoside hydrolase 15-like protein complement(4454933..4456741) Rhodopseudomonas palustris TIE-1 6411845 YP_001993133.1 CDS Rpal_4162 NC_011004.1 4456746 4458698 R KEGG: bbt:BBta_6321 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase complement(4456746..4458698) Rhodopseudomonas palustris TIE-1 6411846 YP_001993134.1 CDS Rpal_4163 NC_011004.1 4458907 4460862 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: nha:Nham_1466 alpha amylase, catalytic region; alpha amylase 4458907..4460862 Rhodopseudomonas palustris TIE-1 6411847 YP_001993135.1 CDS Rpal_4164 NC_011004.1 4460873 4464175 D KEGG: bja:blr6767 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase 4460873..4464175 Rhodopseudomonas palustris TIE-1 6411848 YP_001993136.1 CDS Rpal_4165 NC_011004.1 4464172 4466322 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 4464172..4466322 Rhodopseudomonas palustris TIE-1 6411849 YP_001993137.1 CDS Rpal_4166 NC_011004.1 4466560 4468641 D KEGG: bbt:BBta_6324 glycosyl hydrolase (glycogen debranching enzyme); TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 4466560..4468641 Rhodopseudomonas palustris TIE-1 6411850 YP_001993138.1 CDS Rpal_4167 NC_011004.1 4468638 4470404 D KEGG: bra:BRADO5819 maltooligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose trehalohydrolase 4468638..4470404 Rhodopseudomonas palustris TIE-1 6411851 YP_001993139.1 CDS Rpal_4168 NC_011004.1 4470404 4473190 D KEGG: bra:BRADO5820 glycosyl hydrolase (glycosidase); TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose synthase 4470404..4473190 Rhodopseudomonas palustris TIE-1 6411852 YP_001993140.1 CDS Rpal_4169 NC_011004.1 4473591 4473899 R KEGG: bbt:BBta_6327 hypothetical protein; hypothetical protein complement(4473591..4473899) Rhodopseudomonas palustris TIE-1 6411853 YP_001993141.1 CDS Rpal_4170 NC_011004.1 4474076 4474240 D KEGG: nha:Nham_2869 hypothetical protein; hypothetical protein 4474076..4474240 Rhodopseudomonas palustris TIE-1 6411854 YP_001993142.1 CDS ligD NC_011004.1 4474379 4477123 R catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase complement(4474379..4477123) Rhodopseudomonas palustris TIE-1 6411855 YP_001993143.1 CDS Rpal_4172 NC_011004.1 4477257 4478138 D TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: bja:blr6774 hypothetical protein; Ku protein 4477257..4478138 Rhodopseudomonas palustris TIE-1 6411856 YP_001993144.1 CDS Rpal_4173 NC_011004.1 4478366 4478758 R KEGG: bra:BRADO5825 hypothetical protein; hypothetical protein complement(4478366..4478758) Rhodopseudomonas palustris TIE-1 6411857 YP_001993145.1 CDS Rpal_4174 NC_011004.1 4478822 4479079 R PFAM: SirA family protein; KEGG: nha:Nham_3129 SirA-like; SirA family protein complement(4478822..4479079) Rhodopseudomonas palustris TIE-1 6411858 YP_001993146.1 CDS mobA NC_011004.1 4479207 4479827 D in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4479207..4479827 Rhodopseudomonas palustris TIE-1 6411859 YP_001993147.1 CDS Rpal_4176 NC_011004.1 4479937 4480989 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr2780 probable NAD-dependent alcohol dehydrogenase; alcohol dehydrogenase GroES domain-containing protein complement(4479937..4480989) Rhodopseudomonas palustris TIE-1 6411860 YP_001993148.1 CDS Rpal_4177 NC_011004.1 4481068 4482030 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: bja:blr1330 hypothetical protein; 2-nitropropane dioxygenase complement(4481068..4482030) Rhodopseudomonas palustris TIE-1 6411861 YP_001993149.1 CDS Rpal_4178 NC_011004.1 4482142 4483704 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 4482142..4483704 Rhodopseudomonas palustris TIE-1 6411862 YP_001993150.1 CDS Rpal_4179 NC_011004.1 4483770 4484492 R PFAM: urease accessory protein UreF; KEGG: bja:blr1459 urease accessory protein; urease accessory protein UreF complement(4483770..4484492) Rhodopseudomonas palustris TIE-1 6411863 YP_001993151.1 CDS Rpal_4180 NC_011004.1 4484482 4485138 R PFAM: UreE urease accessory domain protein; KEGG: bra:BRADO1043 urease accessory protein UreE; UreE urease accessory domain-containing protein complement(4484482..4485138) Rhodopseudomonas palustris TIE-1 6411864 YP_001993152.1 CDS Rpal_4181 NC_011004.1 4485147 4485446 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bja:bsr1458 hypothetical protein; antibiotic biosynthesis monooxygenase complement(4485147..4485446) Rhodopseudomonas palustris TIE-1 6411865 YP_001993153.1 CDS ureC NC_011004.1 4485650 4487362 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(4485650..4487362) Rhodopseudomonas palustris TIE-1 6411866 YP_001993154.1 CDS Rpal_4183 NC_011004.1 4487359 4487895 R PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: mex:Mext_3018 metal-dependent phosphohydrolase HD sub domain; metal dependent phosphohydrolase complement(4487359..4487895) Rhodopseudomonas palustris TIE-1 6411867 YP_001993155.1 CDS ureB NC_011004.1 4487895 4488200 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta complement(4487895..4488200) Rhodopseudomonas palustris TIE-1 6411868 YP_001993156.1 CDS ureA NC_011004.1 4488362 4488664 R UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma complement(4488362..4488664) Rhodopseudomonas palustris TIE-1 6411869 YP_001993157.1 CDS Rpal_4186 NC_011004.1 4488711 4489628 R PFAM: urease accessory protein UreD; KEGG: bja:blr1453 urease accessory protein; urease accessory protein UreD complement(4488711..4489628) Rhodopseudomonas palustris TIE-1 6411870 YP_001993158.1 CDS Rpal_4187 NC_011004.1 4489827 4490522 R KEGG: bbt:BBta_7014 branched-chain amino acid ABC transporter (ATP-binding protein); TIGRFAM: urea ABC transporter ATP-binding protein UrtE; PFAM: ABC transporter; SMART: ATPase AAA; urea ABC transporter ATP-binding protein complement(4489827..4490522) Rhodopseudomonas palustris TIE-1 6411871 YP_001993159.1 CDS Rpal_4188 NC_011004.1 4490724 4491488 R KEGG: bja:blr1451 ABC transporter ATP-binding protein; TIGRFAM: urea ABC transporter ATP-binding protein UrtD; PFAM: ABC transporter; SMART: ATPase AAA; urea ABC transporter ATP-binding protein complement(4490724..4491488) Rhodopseudomonas palustris TIE-1 6411872 YP_001993160.1 CDS Rpal_4189 NC_011004.1 4491485 4492660 R TIGRFAM: urea ABC transporter permease protein UrtC; PFAM: inner-membrane translocator; KEGG: bra:BRADO1033 branched-chain amino acid ABC transporter (permease protein); urea ABC transporter permease complement(4491485..4492660) Rhodopseudomonas palustris TIE-1 6411873 YP_001993161.1 CDS Rpal_4190 NC_011004.1 4492833 4494446 R TIGRFAM: urea ABC transporter permease protein UrtB; PFAM: inner-membrane translocator; KEGG: bja:blr1449 ABC transporter permease protein; urea ABC transporter permease complement(4492833..4494446) Rhodopseudomonas palustris TIE-1 6411874 YP_001993162.1 CDS Rpal_4191 NC_011004.1 4494556 4495878 R TIGRFAM: urea ABC transporter urea binding protein; KEGG: bra:BRADO1031 branched-chain amino acid ABC transporter (substrate-binding protein); urea ABC transporter substrate-binding protein complement(4494556..4495878) Rhodopseudomonas palustris TIE-1 6411875 YP_001993163.1 CDS Rpal_4192 NC_011004.1 4496366 4497790 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: nha:Nham_0400 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 4496366..4497790 Rhodopseudomonas palustris TIE-1 6411876 YP_001993164.1 CDS infA NC_011004.1 4497815 4498093 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 4497815..4498093 Rhodopseudomonas palustris TIE-1 6411877 YP_001993165.1 CDS Rpal_4194 NC_011004.1 4498375 4498587 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bbt:BBta_7022 cold shock protein, DNA binding; cold-shock DNA-binding domain-containing protein 4498375..4498587 Rhodopseudomonas palustris TIE-1 6411878 YP_001993166.1 CDS Rpal_4195 NC_011004.1 4498701 4499327 R PFAM: TadE family protein; KEGG: bbt:BBta_7023 hypothetical protein; TadE family protein complement(4498701..4499327) Rhodopseudomonas palustris TIE-1 6411879 YP_001993167.1 CDS Rpal_4196 NC_011004.1 4499340 4499873 R PFAM: TadE family protein; KEGG: bbt:BBta_7024 exported protein of unknown function; TadE family protein complement(4499340..4499873) Rhodopseudomonas palustris TIE-1 6411880 YP_001993168.1 CDS Rpal_4197 NC_011004.1 4500781 4500945 D PFAM: Flp/Fap pilin component; KEGG: bbt:BBta_7028 Flp/Fap pilin component; Flp/Fap pilin component 4500781..4500945 Rhodopseudomonas palustris TIE-1 6411881 YP_001993169.1 CDS Rpal_4198 NC_011004.1 4501273 4501797 D PFAM: peptidase A24A prepilin type IV; KEGG: nwi:Nwi_0303 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 4501273..4501797 Rhodopseudomonas palustris TIE-1 6411882 YP_001993170.1 CDS Rpal_4199 NC_011004.1 4501904 4502485 D TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: bja:bll1440 pilus assembly protein; Flp pilus assembly protein CpaB 4501904..4502485 Rhodopseudomonas palustris TIE-1 6411883 YP_001993171.1 CDS Rpal_4200 NC_011004.1 4502500 4503942 D PFAM: type II and III secretion system protein; transport-associated; KEGG: nha:Nham_0391 type II and III secretion system protein; type II and III secretion system protein 4502500..4503942 Rhodopseudomonas palustris TIE-1 6411884 YP_001993172.1 CDS Rpal_4201 NC_011004.1 4503962 4504690 D TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; PFAM: Pilus biogenesis CpaD family protein; KEGG: nha:Nham_0390 pilus assembly protein CpaD; pilus biogenesis lipoprotein CpaD 4503962..4504690 Rhodopseudomonas palustris TIE-1 6411885 YP_001993173.1 CDS Rpal_4202 NC_011004.1 4504687 4505958 D KEGG: bbt:BBta_7033 pilus assembly protein CpaE; pilus assembly protein CpaE 4504687..4505958 Rhodopseudomonas palustris TIE-1 6411886 YP_001993174.1 CDS Rpal_4203 NC_011004.1 4505979 4507433 D PFAM: type II secretion system protein E; KEGG: bja:bll1436 pilus assembly protein; type II secretion system protein E 4505979..4507433 Rhodopseudomonas palustris TIE-1 6411887 YP_001993175.1 CDS Rpal_4204 NC_011004.1 4507446 4508420 D PFAM: type II secretion system protein; KEGG: bbt:BBta_7035 pilus assembly protein; type II secretion system protein 4507446..4508420 Rhodopseudomonas palustris TIE-1 6411888 YP_001993176.1 CDS Rpal_4205 NC_011004.1 4508429 4509403 D PFAM: type II secretion system protein; KEGG: nha:Nham_0386 type II secretion system protein; type II secretion system protein 4508429..4509403 Rhodopseudomonas palustris TIE-1 6411889 YP_001993177.1 CDS Rpal_4206 NC_011004.1 4509427 4510221 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nha:Nham_0385 tetratricopeptide TPR_2; hypothetical protein complement(4509427..4510221) Rhodopseudomonas palustris TIE-1 6411890 YP_001993178.1 CDS Rpal_4207 NC_011004.1 4510339 4511721 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: nha:Nham_0384 leucyl aminopeptidase; leucyl aminopeptidase 4510339..4511721 Rhodopseudomonas palustris TIE-1 6411891 YP_001993179.1 CDS Rpal_4208 NC_011004.1 4511714 4512559 D PFAM: NLP/P60 protein; KEGG: bja:bll1430 hypothetical protein; NLP/P60 protein 4511714..4512559 Rhodopseudomonas palustris TIE-1 6411892 YP_001993180.1 CDS Rpal_4209 NC_011004.1 4512543 4513181 R PFAM: NUDIX hydrolase; KEGG: xau:Xaut_2637 NUDIX hydrolase; NUDIX hydrolase complement(4512543..4513181) Rhodopseudomonas palustris TIE-1 6411893 YP_001993181.1 CDS Rpal_4210 NC_011004.1 4513189 4514826 R PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: nwi:Nwi_0292 ABC transporter ATPase subunit; ABC transporter complement(4513189..4514826) Rhodopseudomonas palustris TIE-1 6411894 YP_001993182.1 CDS Rpal_4211 NC_011004.1 4514832 4516010 R PFAM: ABC transporter inner membrane protein; KEGG: nwi:Nwi_0291 ABC transporter inner membrane protein; ABC transporter inner membrane protein complement(4514832..4516010) Rhodopseudomonas palustris TIE-1 6411895 YP_001993183.1 CDS Rpal_4212 NC_011004.1 4516010 4517119 R PFAM: ABC transporter inner membrane protein; KEGG: nha:Nham_0380 ABC transporter inner membrane protein; ABC transporter inner membrane protein complement(4516010..4517119) Rhodopseudomonas palustris TIE-1 6411896 YP_001993184.1 CDS Rpal_4213 NC_011004.1 4517121 4518986 R PFAM: extracellular solute-binding protein family 5; KEGG: nha:Nham_0379 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein complement(4517121..4518986) Rhodopseudomonas palustris TIE-1 6411897 YP_001993185.1 CDS Rpal_4214 NC_011004.1 4519001 4520896 R PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_7055 oligopeptide transport protein (ABC superfamily, peri_bind); family 5 extracellular solute-binding protein complement(4519001..4520896) Rhodopseudomonas palustris TIE-1 6411898 YP_001993186.1 CDS Rpal_4215 NC_011004.1 4521109 4521663 R PFAM: cytochrome C class I; KEGG: bja:blr1423 cytochrome C; cytochrome C class I complement(4521109..4521663) Rhodopseudomonas palustris TIE-1 6411899 YP_001993187.1 CDS Rpal_4216 NC_011004.1 4521863 4522600 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 4521863..4522600 Rhodopseudomonas palustris TIE-1 6411900 YP_001993188.1 CDS Rpal_4217 NC_011004.1 4522672 4523514 D catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase 4522672..4523514 Rhodopseudomonas palustris TIE-1 6411901 YP_001993189.1 CDS Rpal_4218 NC_011004.1 4523554 4524180 R PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B0850 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4523554..4524180) Rhodopseudomonas palustris TIE-1 6411902 YP_001993190.1 CDS Rpal_4219 NC_011004.1 4524325 4525485 D PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_A2816 MFS efflux system, membrane fusion protein, EmrA subfamily; secretion protein HlyD family protein 4524325..4525485 Rhodopseudomonas palustris TIE-1 6411903 YP_001993191.1 CDS Rpal_4220 NC_011004.1 4525482 4527014 D TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_1385 drug resistance transporter EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter 4525482..4527014 Rhodopseudomonas palustris TIE-1 6411904 YP_001993192.1 CDS Rpal_4221 NC_011004.1 4527031 4527759 D PFAM: Siderophore-interacting protein; oxidoreductase FAD-binding protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: mxa:MXAN_3639 iron-chelator utilization protein; Siderophore-interacting protein 4527031..4527759 Rhodopseudomonas palustris TIE-1 6411905 YP_001993193.1 CDS Rpal_4222 NC_011004.1 4527827 4528843 R PFAM: monooxygenase; KEGG: bja:blr1420 flavin dependant oxidoreductase; monooxygenase complement(4527827..4528843) Rhodopseudomonas palustris TIE-1 6411906 YP_001993194.1 CDS Rpal_4223 NC_011004.1 4529253 4530140 D KEGG: bbt:BBta_7060 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 4529253..4530140 Rhodopseudomonas palustris TIE-1 6411907 YP_001993195.1 CDS metH NC_011004.1 4530153 4534034 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4530153..4534034 Rhodopseudomonas palustris TIE-1 6411908 YP_001993196.1 CDS Rpal_4225 NC_011004.1 4535169 4535456 D PFAM: excinuclease ABC subunit C; KEGG: bja:bsl5627 hypothetical protein; excinuclease ABC subunit C 4535169..4535456 Rhodopseudomonas palustris TIE-1 6411909 YP_001993197.1 CDS Rpal_4226 NC_011004.1 4535783 4537285 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: bbt:BBta_7067 glycerol kinase; glycerol kinase complement(4535783..4537285) Rhodopseudomonas palustris TIE-1 6411910 YP_001993198.1 CDS Rpal_4227 NC_011004.1 4537494 4538078 D PFAM: response regulator receiver; ANTAR domain protein; KEGG: bbt:BBta_4139 two-component response regulator; response regulator receiver and ANTAR domain-containing protein 4537494..4538078 Rhodopseudomonas palustris TIE-1 6411911 YP_001993199.1 CDS Rpal_4228 NC_011004.1 4538075 4539235 D KEGG: bja:bll4572 nitrate transport protein; nitrate transport protein 4538075..4539235 Rhodopseudomonas palustris TIE-1 6411912 YP_001993200.1 CDS Rpal_4229 NC_011004.1 4539256 4539696 D PFAM: globin; KEGG: bbt:BBta_3847 globin-like protein; globin 4539256..4539696 Rhodopseudomonas palustris TIE-1 6411913 YP_001993201.1 CDS Rpal_4230 NC_011004.1 4540054 4540476 D PFAM: globin; KEGG: xau:Xaut_2501 globin; globin 4540054..4540476 Rhodopseudomonas palustris TIE-1 6411914 YP_001993202.1 CDS nirA NC_011004.1 4540519 4542291 D ferredoxin-dependent assimilatory nitrite reductase; ferredoxin-nitrite reductase 4540519..4542291 Rhodopseudomonas palustris TIE-1 6411915 YP_001993203.1 CDS Rpal_4232 NC_011004.1 4542288 4543907 D Catalyzes the reduction of sulfite to sulfide, an essential step in the anaerobic sulfate-respiration pathway; sulfite reductase 4542288..4543907 Rhodopseudomonas palustris TIE-1 6411916 YP_001993204.1 CDS Rpal_4233 NC_011004.1 4544227 4545000 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_7068 dehydrogenase/reductase SDR family member; short-chain dehydrogenase/reductase SDR complement(4544227..4545000) Rhodopseudomonas palustris TIE-1 6411917 YP_001993205.1 CDS Rpal_4234 NC_011004.1 4545269 4546411 R TIGRFAM: pimeloyl-CoA dehydrogenase, small subunit; PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bra:BRADO0985 acyl-CoA dehydrogenase; Pimeloyl-CoA dehydrogenase PimD (small subunit); pimeloyl-CoA dehydrogenase, small subunit complement(4545269..4546411) Rhodopseudomonas palustris TIE-1 6411918 YP_001993206.1 CDS Rpal_4235 NC_011004.1 4546580 4547770 R TIGRFAM: pimeloyl-CoA dehydrogenase, large subunit; PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bra:BRADO0984 acyl-CoA dehydrogenase; pimeloyl-CoA dehydrogenase PimC (large subunit); pimeloyl-CoA dehydrogenase, large subunit complement(4546580..4547770) Rhodopseudomonas palustris TIE-1 6411919 YP_001993207.1 CDS Rpal_4236 NC_011004.1 4547984 4549171 R KEGG: bbt:BBta_7072 acetyl-CoA acetyltransferase with thiolase domain; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(4547984..4549171) Rhodopseudomonas palustris TIE-1 6411920 YP_001993208.1 CDS Rpal_4237 NC_011004.1 4549203 4550861 R TIGRFAM: dicarboxylate/CoA ligase PimA; PFAM: AMP-dependent synthetase and ligase; KEGG: bra:BRADO0982 long-chain-fatty-acid--CoA ligase; long-chain acyl-CoA synthetase; pimeloyl-CoA ligase PimA; dicarboxylate/CoA ligase PimA complement(4549203..4550861) Rhodopseudomonas palustris TIE-1 6411921 YP_001993209.1 CDS Rpal_4238 NC_011004.1 4551040 4553139 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bja:bll7821 probable fatty oxidation complex alpha subunit; 3-hydroxyacyl-CoA dehydrogenase complement(4551040..4553139) Rhodopseudomonas palustris TIE-1 6411922 YP_001993210.1 CDS Rpal_4239 NC_011004.1 4553272 4554138 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bja:blr7822 transcriptional regulatory protein; IclR family transcriptional regulator 4553272..4554138 Rhodopseudomonas palustris TIE-1 6411923 YP_001993211.1 CDS Rpal_4240 NC_011004.1 4554169 4554969 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr7823 ABC transporter ATP-binding protein; ABC transporter 4554169..4554969 Rhodopseudomonas palustris TIE-1 6411924 YP_001993212.1 CDS Rpal_4241 NC_011004.1 4554966 4555679 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr7824 ABC transporter ATP-binding protein; ABC transporter 4554966..4555679 Rhodopseudomonas palustris TIE-1 6411925 YP_001993213.1 CDS Rpal_4242 NC_011004.1 4555690 4556568 D PFAM: inner-membrane translocator; KEGG: bbt:BBta_7078 high-affinity branched-chain amino acid transport system permease protein LivH; inner-membrane translocator 4555690..4556568 Rhodopseudomonas palustris TIE-1 6411926 YP_001993214.1 CDS Rpal_4243 NC_011004.1 4556571 4557590 D PFAM: inner-membrane translocator; KEGG: bra:BRADO0976 high-affinity branched-chain amino acid transport system permease protein LivM (ABC superfamily, membrane); inner-membrane translocator 4556571..4557590 Rhodopseudomonas palustris TIE-1 6411927 YP_001993215.1 CDS Rpal_4244 NC_011004.1 4557789 4559024 D PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO0975 ABC-type branched-chain amino acid transporter periplasmic binding protein; branched-chain amino acid ABC transporter periplasmic protein 4557789..4559024 Rhodopseudomonas palustris TIE-1 6411928 YP_001993216.1 CDS Rpal_4245 NC_011004.1 4559205 4560437 D KEGG: bja:blr7827 ABC transporter substrate-binding protein; ABC transporter substrate-binding protein 4559205..4560437 Rhodopseudomonas palustris TIE-1 6411929 YP_001993217.1 CDS Rpal_4246 NC_011004.1 4560785 4562014 D PFAM: extracellular ligand-binding receptor; KEGG: bbt:BBta_7081 ABC-type branched-chain amino acid transporter periplasmic binding protein; branched-chain amino acid ABC transporter periplasmic protein 4560785..4562014 Rhodopseudomonas palustris TIE-1 6411930 YP_001993218.1 CDS Rpal_4247 NC_011004.1 4562139 4562639 R PFAM: protein of unknown function DUF892; KEGG: nha:Nham_2670 protein of unknown function DUF892; hypothetical protein complement(4562139..4562639) Rhodopseudomonas palustris TIE-1 6411931 YP_001993219.1 CDS Rpal_4248 NC_011004.1 4562884 4563930 D PFAM: Mg2 transporter protein CorA family protein; KEGG: bra:BRADO6358 divalent cation transporter CorA-like; Mg2 transporter protein CorA family protein 4562884..4563930 Rhodopseudomonas palustris TIE-1 6411932 YP_001993220.1 CDS Rpal_4249 NC_011004.1 4564119 4566131 D PFAM: carbohydrate-selective porin OprB; KEGG: bbt:BBta_3415 outer membrane protein of unknown function; carbohydrate-selective porin OprB 4564119..4566131 Rhodopseudomonas palustris TIE-1 6411933 YP_001993221.1 CDS Rpal_4250 NC_011004.1 4566392 4567564 R KEGG: nha:Nham_2671 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(4566392..4567564) Rhodopseudomonas palustris TIE-1 6411934 YP_001993222.1 CDS Rpal_4251 NC_011004.1 4567689 4569308 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bbt:BBta_2981 GMC-type oxidoreductase; glucose-methanol-choline oxidoreductase 4567689..4569308 Rhodopseudomonas palustris TIE-1 6411935 YP_001993223.1 CDS Rpal_4252 NC_011004.1 4569308 4570210 D PFAM: alpha/beta hydrolase fold; KEGG: olu:OSTLU_86220 predicted protein; alpha/beta hydrolase fold protein 4569308..4570210 Rhodopseudomonas palustris TIE-1 6411936 YP_001993224.1 CDS Rpal_4253 NC_011004.1 4570235 4571626 R PFAM: aminotransferase class-III; KEGG: bra:BRADO2635 aminotransferase; ornithine aminotransferase; class III aminotransferase complement(4570235..4571626) Rhodopseudomonas palustris TIE-1 6411937 YP_001993225.1 CDS Rpal_4254 NC_011004.1 4571957 4574563 R TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: bja:blr3008 hypothetical protein; hopanoid biosynthesis associated RND transporter like protein HpnN complement(4571957..4574563) Rhodopseudomonas palustris TIE-1 6411938 YP_001993226.1 CDS ispH NC_011004.1 4574876 4575820 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4574876..4575820 Rhodopseudomonas palustris TIE-1 6411939 YP_001993227.1 CDS Rpal_4256 NC_011004.1 4575860 4577020 D TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: radical SAM domain protein; KEGG: bja:bll3006 hypothetical protein; hopanoid biosynthesis associated radical SAM protein HpnH 4575860..4577020 Rhodopseudomonas palustris TIE-1 6411940 YP_001993228.1 CDS Rpal_4257 NC_011004.1 4577096 4578100 R TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: gdi:GDI3819 phosphate-binding periplasmic protein precursor; phosphate ABC transporter substrate-binding protein complement(4577096..4578100) Rhodopseudomonas palustris TIE-1 6411941 YP_001993229.1 CDS Rpal_4258 NC_011004.1 4578134 4579378 R TIGRFAM: phosphonoacetate hydrolase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: bbr:BB1010 phosphonoacetate hydrolase; phosphonoacetate hydrolase complement(4578134..4579378) Rhodopseudomonas palustris TIE-1 6411942 YP_001993230.1 CDS Rpal_4259 NC_011004.1 4579536 4580426 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B0837 transcriptional regulator of phosphonate operon,LysR-family; LysR family transcriptional regulator 4579536..4580426 Rhodopseudomonas palustris TIE-1 6411943 YP_001993231.1 CDS Rpal_4260 NC_011004.1 4580517 4581260 R TIGRFAM: hopanoid-associated phosphorylase; KEGG: nha:Nham_2681 hypothetical protein; hypothetical protein complement(4580517..4581260) Rhodopseudomonas palustris TIE-1 6411944 YP_001993232.1 CDS Rpal_4261 NC_011004.1 4581257 4583218 R TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: bja:blr3004 squalene-hopene cyclase; squalene-hopene cyclase complement(4581257..4583218) Rhodopseudomonas palustris TIE-1 6411945 YP_001993233.1 CDS Rpal_4262 NC_011004.1 4583252 4584508 R TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; KEGG: bbt:BBta_2968 phytoene dehydrogenase; squalene-associated FAD-dependent desaturase complement(4583252..4584508) Rhodopseudomonas palustris TIE-1 6411946 YP_001993234.1 CDS Rpal_4263 NC_011004.1 4584508 4585347 R TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: bja:blr3002 phytoene synthase; squalene synthase complement(4584508..4585347) Rhodopseudomonas palustris TIE-1 6411947 YP_001993235.1 CDS Rpal_4264 NC_011004.1 4585344 4586222 R TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: bja:blr3001 hypothetical protein; squalene synthase complement(4585344..4586222) Rhodopseudomonas palustris TIE-1 6411948 YP_001993236.1 CDS Rpal_4265 NC_011004.1 4586427 4586666 R KEGG: nwi:Nwi_2273 hypothetical protein; hypothetical protein complement(4586427..4586666) Rhodopseudomonas palustris TIE-1 6411949 YP_001993237.1 CDS Rpal_4266 NC_011004.1 4587056 4587559 D KEGG: bra:BRADO2625 hypothetical protein; hypothetical protein 4587056..4587559 Rhodopseudomonas palustris TIE-1 6411950 YP_001993238.1 CDS Rpal_4267 NC_011004.1 4587655 4590024 R KEGG: nha:Nham_2688 RND superfamily transporter; RND superfamily transporter complement(4587655..4590024) Rhodopseudomonas palustris TIE-1 6411951 YP_001993239.1 CDS Rpal_4268 NC_011004.1 4590232 4590999 R catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit complement(4590232..4590999) Rhodopseudomonas palustris TIE-1 6411952 YP_001993240.1 CDS Rpal_4269 NC_011004.1 4591007 4592590 R PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bja:blr2995 hypothetical protein; radical SAM domain-containing protein complement(4591007..4592590) Rhodopseudomonas palustris TIE-1 6411953 YP_001993241.1 CDS Rpal_4270 NC_011004.1 4592818 4594200 R PFAM: ethanolamine ammonia lyase large subunit; KEGG: bja:blr2994 ethanolamine ammonia-lyase heavy chain; ethanolamine ammonia lyase large subunit complement(4592818..4594200) Rhodopseudomonas palustris TIE-1 6411954 YP_001993242.1 CDS Rpal_4271 NC_011004.1 4594262 4595965 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:bll0327 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(4594262..4595965) Rhodopseudomonas palustris TIE-1 6411955 YP_001993243.1 CDS Rpal_4272 NC_011004.1 4596018 4596473 R PFAM: Cache type 2 domain protein; KEGG: har:HEAR0017 methyl-accepting chemotaxis sensory transducer; Cache type 2 domain-containing protein complement(4596018..4596473) Rhodopseudomonas palustris TIE-1 6411956 YP_001993244.1 CDS Rpal_4273 NC_011004.1 4596676 4597554 R PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bra:BRADO2603 hypothetical protein; transglutaminase domain-containing protein complement(4596676..4597554) Rhodopseudomonas palustris TIE-1 6411957 YP_001993245.1 CDS Rpal_4274 NC_011004.1 4597551 4600052 R PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: bbt:BBta_2948 hypothetical protein; hypothetical protein complement(4597551..4600052) Rhodopseudomonas palustris TIE-1 6411958 YP_001993246.1 CDS Rpal_4275 NC_011004.1 4600078 4603419 R PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bra:BRADO2601 hypothetical protein; transglutaminase domain-containing protein complement(4600078..4603419) Rhodopseudomonas palustris TIE-1 6411959 YP_001993247.1 CDS Rpal_4276 NC_011004.1 4603725 4604501 R PFAM: HpcH/HpaI aldolase; KEGG: bra:BRADO2598 aldolase; HpcH/HpaI aldolase complement(4603725..4604501) Rhodopseudomonas palustris TIE-1 6411960 YP_001993248.1 CDS Rpal_4277 NC_011004.1 4604685 4605770 R PFAM: Malate/L-lactate dehydrogenase; KEGG: bra:BRADO2597 hypothetical oxidoreductase; malate/L-lactate dehydrogenase complement(4604685..4605770) Rhodopseudomonas palustris TIE-1 6411961 YP_001993249.1 CDS Rpal_4278 NC_011004.1 4605811 4606350 R TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; KEGG: bja:blr2971 transcriptional regulatory protein; MarR family transcriptional regulator complement(4605811..4606350) Rhodopseudomonas palustris TIE-1 6411962 YP_001993250.1 CDS Rpal_4279 NC_011004.1 4606596 4607402 D KEGG: bja:bll2970 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 4606596..4607402 Rhodopseudomonas palustris TIE-1 6411963 YP_001993251.1 CDS Rpal_4280 NC_011004.1 4607423 4607821 D PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: bbt:BBta_2940 5-carboxymethyl-2-hydroxymuconate isomerase, HpcD-like protein; 5-carboxymethyl-2-hydroxymuconate isomerase 4607423..4607821 Rhodopseudomonas palustris TIE-1 6411964 YP_001993252.1 CDS Rpal_4281 NC_011004.1 4607814 4609355 D TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bja:bll2968 NAD-dependent succinate aldehyde dehydrogenase; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 4607814..4609355 Rhodopseudomonas palustris TIE-1 6411965 YP_001993253.1 CDS Rpal_4282 NC_011004.1 4609586 4610506 D TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll2967 metapyrocatechase; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 4609586..4610506 Rhodopseudomonas palustris TIE-1 6411966 YP_001993254.1 CDS Rpal_4283 NC_011004.1 4610657 4611529 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bra:BRADO2592 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), bifunctional protein isomerase/decarboxylase HpcE-like; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 4610657..4611529 Rhodopseudomonas palustris TIE-1 6411967 YP_001993255.1 CDS Rpal_4284 NC_011004.1 4611558 4613183 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bbt:BBta_2937 hypothetical protein; hypothetical protein 4611558..4613183 Rhodopseudomonas palustris TIE-1 6411968 YP_001993256.1 CDS Rpal_4285 NC_011004.1 4613374 4614462 R TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding protein; KEGG: bja:blr2895 ferredoxin reductase electron transfer component protein; phenylacetate-CoA oxygenase/reductase subunit PaaK complement(4613374..4614462) Rhodopseudomonas palustris TIE-1 6411969 YP_001993257.1 CDS Rpal_4286 NC_011004.1 4614471 4614974 R TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: bbt:BBta_2868 phenylacetic acid degradation protein PaaD; phenylacetate-CoA oxygenase subunit PaaJ complement(4614471..4614974) Rhodopseudomonas palustris TIE-1 6411970 YP_001993258.1 CDS Rpal_4287 NC_011004.1 4614968 4615744 R TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: bbt:BBta_2867 phenylacetic acid degradation protein PaaC; phenylacetate-CoA oxygenase subunit PaaI complement(4614968..4615744) Rhodopseudomonas palustris TIE-1 6411971 YP_001993259.1 CDS paaB NC_011004.1 4615860 4616147 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB complement(4615860..4616147) Rhodopseudomonas palustris TIE-1 6411972 YP_001993260.1 CDS paaA NC_011004.1 4616321 4617307 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA complement(4616321..4617307) Rhodopseudomonas palustris TIE-1 6411973 YP_001993261.1 CDS Rpal_4290 NC_011004.1 4617430 4618110 D PFAM: regulatory protein TetR; KEGG: xau:Xaut_0894 transcriptional regulator, TetR family; TetR family transcriptional regulator 4617430..4618110 Rhodopseudomonas palustris TIE-1 6411974 YP_001993262.1 CDS Rpal_4291 NC_011004.1 4618344 4618847 R TIGRFAM: phasin; KEGG: bra:BRADO2517 hypothetical protein; phasin complement(4618344..4618847) Rhodopseudomonas palustris TIE-1 6411975 YP_001993263.1 CDS Rpal_4292 NC_011004.1 4619059 4619379 R KEGG: bbt:BBta_2862 hypothetical protein; hypothetical protein complement(4619059..4619379) Rhodopseudomonas palustris TIE-1 6411976 YP_001993264.1 CDS Rpal_4293 NC_011004.1 4619428 4620219 R PFAM: PGAP1 family protein; KEGG: bja:blr2879 hypothetical protein; PGAP1 family protein complement(4619428..4620219) Rhodopseudomonas palustris TIE-1 6411977 YP_001993265.1 CDS Rpal_4294 NC_011004.1 4620238 4620492 R KEGG: bja:bsr2878 hypothetical protein; hypothetical protein complement(4620238..4620492) Rhodopseudomonas palustris TIE-1 6411978 YP_001993266.1 CDS Rpal_4295 NC_011004.1 4620583 4621836 R PFAM: FAD dependent oxidoreductase; KEGG: nha:Nham_2698 D-amino-acid dehydrogenase; FAD dependent oxidoreductase complement(4620583..4621836) Rhodopseudomonas palustris TIE-1 6411979 YP_001993267.1 CDS Rpal_4296 NC_011004.1 4622116 4625220 R PFAM: acriflavin resistance protein; KEGG: nha:Nham_2699 acriflavin resistance protein; acriflavin resistance protein complement(4622116..4625220) Rhodopseudomonas palustris TIE-1 6411980 YP_001993268.1 CDS Rpal_4297 NC_011004.1 4625362 4626555 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: nha:Nham_2700 secretion protein HlyD; RND family efflux transporter MFP subunit complement(4625362..4626555) Rhodopseudomonas palustris TIE-1 6411981 YP_001993269.1 CDS Rpal_4298 NC_011004.1 4626557 4627258 R PFAM: regulatory protein TetR; KEGG: nha:Nham_2701 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4626557..4627258) Rhodopseudomonas palustris TIE-1 6411982 YP_001993270.1 CDS Rpal_4299 NC_011004.1 4627478 4628698 D PFAM: cytochrome P450; KEGG: bja:bll2856 probable cytochrome P450; cytochrome P450 4627478..4628698 Rhodopseudomonas palustris TIE-1 6411983 YP_001993271.1 CDS Rpal_4300 NC_011004.1 4628869 4630428 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr2248 hypothetical protein; hypothetical protein 4628869..4630428 Rhodopseudomonas palustris TIE-1 6411984 YP_001993272.1 CDS Rpal_4301 NC_011004.1 4630440 4631312 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bbt:BBta_2840 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(4630440..4631312) Rhodopseudomonas palustris TIE-1 6411985 YP_001993273.1 CDS Rpal_4302 NC_011004.1 4631647 4632540 D PFAM: PfkB domain protein; KEGG: bra:BRADO2493 sugar kinase; PfkB domain-containing protein 4631647..4632540 Rhodopseudomonas palustris TIE-1 6411986 YP_001993274.1 CDS Rpal_4303 NC_011004.1 4632644 4633861 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nha:Nham_2703 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(4632644..4633861) Rhodopseudomonas palustris TIE-1 6411987 YP_001993275.1 CDS Rpal_4304 NC_011004.1 4633986 4635470 R KEGG: bja:bll5638 hypothetical protein; hypothetical protein complement(4633986..4635470) Rhodopseudomonas palustris TIE-1 6411988 YP_001993276.1 CDS Rpal_4305 NC_011004.1 4635490 4636650 R PFAM: glycosyl transferase family 2; GtrA family protein; KEGG: bbt:BBta_5297 dolichol-phosphate mannosyltransferase; family 2 glycosyl transferase complement(4635490..4636650) Rhodopseudomonas palustris TIE-1 6411989 YP_001993277.1 CDS Rpal_4306 NC_011004.1 4636877 4637683 D PFAM: protein of unknown function DUF72; KEGG: bra:BRADO2875 conserved hypothetical protein (DUF72); hypothetical protein 4636877..4637683 Rhodopseudomonas palustris TIE-1 6411990 YP_001993278.1 CDS Rpal_4307 NC_011004.1 4637829 4638086 D hypothetical protein 4637829..4638086 Rhodopseudomonas palustris TIE-1 6411991 YP_001993279.1 CDS Rpal_4308 NC_011004.1 4638184 4639086 D KEGG: nha:Nham_2600 hypothetical protein; hypothetical protein 4638184..4639086 Rhodopseudomonas palustris TIE-1 6411992 YP_001993280.1 CDS Rpal_4309 NC_011004.1 4639097 4639699 R KEGG: bja:blr2820 hypothetical protein; hypothetical protein complement(4639097..4639699) Rhodopseudomonas palustris TIE-1 6411993 YP_001993281.1 CDS Rpal_4310 NC_011004.1 4640025 4641197 R PFAM: ABC transporter; KEGG: bbt:BBta_5303 ABC transporter (fused ATP-binding and permease components); ABC transporter complement(4640025..4641197) Rhodopseudomonas palustris TIE-1 6411994 YP_001993282.1 CDS Rpal_4311 NC_011004.1 4641194 4642147 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll5649 ABC transporter ATP-binding protein; ABC transporter complement(4641194..4642147) Rhodopseudomonas palustris TIE-1 6411995 YP_001993283.1 CDS Rpal_4312 NC_011004.1 4642144 4642947 R KEGG: bja:bll5650 hypothetical protein; hypothetical protein complement(4642144..4642947) Rhodopseudomonas palustris TIE-1 6411996 YP_001993284.1 CDS Rpal_4313 NC_011004.1 4642944 4643660 R PFAM: regulatory protein TetR; KEGG: nha:Nham_0716 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4642944..4643660) Rhodopseudomonas palustris TIE-1 6411997 YP_001993285.1 CDS Rpal_4314 NC_011004.1 4643731 4644870 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sme:SMa2301 response regulator; diguanylate cyclase complement(4643731..4644870) Rhodopseudomonas palustris TIE-1 6411998 YP_001993286.1 CDS Rpal_4315 NC_011004.1 4645076 4645252 D KEGG: bra:BRADO3443 hypothetical protein; hypothetical protein 4645076..4645252 Rhodopseudomonas palustris TIE-1 6411999 YP_001993287.1 CDS Rpal_4316 NC_011004.1 4645258 4645668 R KEGG: bja:bll5656 hypothetical protein; hypothetical protein complement(4645258..4645668) Rhodopseudomonas palustris TIE-1 6412000 YP_001993288.1 CDS Rpal_4317 NC_011004.1 4645730 4646113 R KEGG: bja:bll5657 hypothetical protein; hypothetical protein complement(4645730..4646113) Rhodopseudomonas palustris TIE-1 6412001 YP_001993289.1 CDS Rpal_4318 NC_011004.1 4646223 4646975 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:bll3036 enoyl CoA hydratase; Enoyl-CoA hydratase/isomerase complement(4646223..4646975) Rhodopseudomonas palustris TIE-1 6412002 YP_001993290.1 CDS Rpal_4319 NC_011004.1 4647075 4647905 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: swi:Swit_2160 transcriptional regulator, LysR family; LysR family transcriptional regulator 4647075..4647905 Rhodopseudomonas palustris TIE-1 6412003 YP_001993291.1 CDS Rpal_4320 NC_011004.1 4647917 4649518 R PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; molybdopterin binding domain; KEGG: bra:BRADO2863 conserved hypothetical protein; molybdopterin binding protein with a nucleotide-diphospho-sugar transferase domain; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase complement(4647917..4649518) Rhodopseudomonas palustris TIE-1 6412004 YP_001993292.1 CDS Rpal_4321 NC_011004.1 4649515 4650216 R KEGG: bbt:BBta_5313 hypothetical protein; hypothetical protein complement(4649515..4650216) Rhodopseudomonas palustris TIE-1 6412005 YP_001993293.1 CDS Rpal_4322 NC_011004.1 4650247 4650573 R PFAM: protein of unknown function DUF182; KEGG: bja:bll5661 hypothetical protein; hypothetical protein complement(4650247..4650573) Rhodopseudomonas palustris TIE-1 6412006 YP_001993294.1 CDS Rpal_4323 NC_011004.1 4650612 4651829 R PFAM: VWA containing CoxE family protein; KEGG: bja:bll5662 hypothetical protein; VWA containing CoxE family protein complement(4650612..4651829) Rhodopseudomonas palustris TIE-1 6412007 YP_001993295.1 CDS Rpal_4324 NC_011004.1 4652154 4653056 R PFAM: ATPase AAA; SMART: ATPase AAA; KEGG: bbt:BBta_5316 ATPase, AAA family; ATPase AAA complement(4652154..4653056) Rhodopseudomonas palustris TIE-1 6412008 YP_001993296.1 CDS Rpal_4325 NC_011004.1 4653076 4653882 R PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: bja:bll5664 carbon monoxide dehydrogenase medium subunit; molybdopterin dehydrogenase complement(4653076..4653882) Rhodopseudomonas palustris TIE-1 6412009 YP_001993297.1 CDS Rpal_4326 NC_011004.1 4653958 4654443 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bra:BRADO2857 carbon-monoxide dehydrogenase small subunit, CoxS-like protein; (2Fe-2S)-binding domain-containing protein complement(4653958..4654443) Rhodopseudomonas palustris TIE-1 6412010 YP_001993298.1 CDS Rpal_4327 NC_011004.1 4654619 4655083 R PFAM: cyclase/dehydrase; carbon monoxide dehydrogenase subunit G; KEGG: bja:bll5666 hypothetical protein; carbon monoxide dehydrogenase subunit G complement(4654619..4655083) Rhodopseudomonas palustris TIE-1 6412011 YP_001993299.1 CDS Rpal_4328 NC_011004.1 4655276 4655803 R KEGG: nha:Nham_2610 hypothetical protein; hypothetical protein complement(4655276..4655803) Rhodopseudomonas palustris TIE-1 6412012 YP_001993300.1 CDS Rpal_4329 NC_011004.1 4656103 4656297 R KEGG: ncr:NCU04059 hypothetical protein; hypothetical protein complement(4656103..4656297) Rhodopseudomonas palustris TIE-1 6412013 YP_001993301.1 CDS Rpal_4330 NC_011004.1 4656637 4657554 D PFAM: inner-membrane translocator; KEGG: bbt:BBta_5323 high-affinity branched-chain amino acid ABC transporter (permease protein); inner-membrane translocator 4656637..4657554 Rhodopseudomonas palustris TIE-1 6412014 YP_001993302.1 CDS Rpal_4331 NC_011004.1 4657567 4658898 D PFAM: inner-membrane translocator; KEGG: bbt:BBta_5324 high-affinity branched-chain amino acid ABC transporter (permease protein); inner-membrane translocator 4657567..4658898 Rhodopseudomonas palustris TIE-1 6412015 YP_001993303.1 CDS Rpal_4332 NC_011004.1 4658895 4659731 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nwi:Nwi_2211 ABC transporter ATPase subunit; ABC transporter 4658895..4659731 Rhodopseudomonas palustris TIE-1 6412016 YP_001993304.1 CDS Rpal_4333 NC_011004.1 4659868 4660608 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_5326 high-affinity branched-chain amino acid ABC transporter (ATP-binding protein); ABC transporter 4659868..4660608 Rhodopseudomonas palustris TIE-1 6412017 YP_001993305.1 CDS Rpal_4334 NC_011004.1 4660787 4661893 D PFAM: extracellular ligand-binding receptor; KEGG: bbt:BBta_5327 high-affinity branched-chain amino acid ABC transporter (substrate-binding protein); branched-chain amino acid ABC transporter substrate-binding protein 4660787..4661893 Rhodopseudomonas palustris TIE-1 6412018 YP_001993306.1 CDS Rpal_4335 NC_011004.1 4662106 4662393 R PFAM: excinuclease ABC subunit C; KEGG: nha:Nham_1409 excinuclease ABC, C subunit-like; excinuclease ABC subunit C complement(4662106..4662393) Rhodopseudomonas palustris TIE-1 6412019 YP_001993307.1 CDS Rpal_4336 NC_011004.1 4662464 4663633 R PFAM: Integrase catalytic region; KEGG: sme:SMc04250 transposase protein; integrase catalytic subunit complement(4662464..4663633) Rhodopseudomonas palustris TIE-1 6412020 YP_001993308.1 CDS Rpal_4337 NC_011004.1 4663938 4664672 R PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: bja:blr2789 cytochrome C-type biogenesis protein; cytochrome c biogenesis protein transmembrane protein complement(4663938..4664672) Rhodopseudomonas palustris TIE-1 6412021 YP_001993309.1 CDS Rpal_4338 NC_011004.1 4664819 4665823 D PFAM: peptidase S58 DmpA; KEGG: nha:Nham_2617 peptidase S58, DmpA; peptidase S58 DmpA 4664819..4665823 Rhodopseudomonas palustris TIE-1 6412022 YP_001993310.1 CDS Rpal_4339 NC_011004.1 4665964 4666734 R PFAM: Calcium-binding EF-hand-containing protein; KEGG: bra:BRADO2843 conserved hypothetical protein; signal peptide; calcium-binding domain (EF-hand); signal transduction protein with EFhand domain complement(4665964..4666734) Rhodopseudomonas palustris TIE-1 6412023 YP_001993311.1 CDS Rpal_4340 NC_011004.1 4667004 4667702 D PFAM: ribulose-phosphate 3-epimerase; KEGG: bja:blr5680 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 4667004..4667702 Rhodopseudomonas palustris TIE-1 6412024 YP_001993312.1 CDS Rpal_4341 NC_011004.1 4667699 4668337 R hypothetical protein complement(4667699..4668337) Rhodopseudomonas palustris TIE-1 6412025 YP_001993313.1 CDS Rpal_4342 NC_011004.1 4668607 4669776 D PFAM: Integrase catalytic region; KEGG: sme:SMc04250 transposase protein; integrase catalytic subunit 4668607..4669776 Rhodopseudomonas palustris TIE-1 6412026 YP_001993314.1 CDS Rpal_4343 NC_011004.1 4670249 4671556 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 4670249..4671556 Rhodopseudomonas palustris TIE-1 6412027 YP_001993315.1 CDS Rpal_4344 NC_011004.1 4671707 4672408 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I complement(4671707..4672408) Rhodopseudomonas palustris TIE-1 6412028 YP_001993316.1 CDS Rpal_4345 NC_011004.1 4672465 4672704 R KEGG: bra:BRADO2778 hypothetical protein; hypothetical protein complement(4672465..4672704) Rhodopseudomonas palustris TIE-1 6412029 YP_001993317.1 CDS Rpal_4346 NC_011004.1 4672728 4672973 R With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway; phosphoribosylformylglycinamidine synthase PurS complement(4672728..4672973) Rhodopseudomonas palustris TIE-1 6412030 YP_001993318.1 CDS Rpal_4347 NC_011004.1 4673156 4673953 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(4673156..4673953) Rhodopseudomonas palustris TIE-1 6412031 YP_001993319.1 CDS Rpal_4348 NC_011004.1 4674222 4674545 D PFAM: protein of unknown function DUF1476; KEGG: nwi:Nwi_1303 protein of unknown function DUF1476; hypothetical protein 4674222..4674545 Rhodopseudomonas palustris TIE-1 6412032 YP_001993320.1 CDS Rpal_4349 NC_011004.1 4675117 4675791 D KEGG: nha:Nham_1630 hypothetical protein; hypothetical protein 4675117..4675791 Rhodopseudomonas palustris TIE-1 6412033 YP_001993321.1 CDS Rpal_4350 NC_011004.1 4676145 4676495 R KEGG: mar:MAE_29420 transcriptional regulator; transcriptional regulator complement(4676145..4676495) Rhodopseudomonas palustris TIE-1 6412034 YP_001993322.1 CDS Rpal_4351 NC_011004.1 4676476 4676859 R PFAM: protein of unknown function DUF891; KEGG: mar:MAE_29280 hypothetical protein; hypothetical protein complement(4676476..4676859) Rhodopseudomonas palustris TIE-1 6412035 YP_001993323.1 CDS Rpal_4352 NC_011004.1 4676968 4677786 R KEGG: nha:Nham_2180 hypothetical protein; hypothetical protein complement(4676968..4677786) Rhodopseudomonas palustris TIE-1 6412036 YP_001993324.1 CDS Rpal_4353 NC_011004.1 4678103 4678486 R KEGG: bbt:BBta_5411 hypothetical protein; hypothetical protein complement(4678103..4678486) Rhodopseudomonas palustris TIE-1 6412037 YP_001993325.1 CDS Rpal_4354 NC_011004.1 4678782 4679021 D KEGG: maq:Maqu_0204 hypothetical protein; hypothetical protein 4678782..4679021 Rhodopseudomonas palustris TIE-1 6412038 YP_001993326.1 CDS Rpal_4355 NC_011004.1 4679620 4680234 R KEGG: xcv:XCVd0120 hypothetical protein; hypothetical protein complement(4679620..4680234) Rhodopseudomonas palustris TIE-1 6412039 YP_001993327.1 CDS Rpal_4356 NC_011004.1 4680442 4680996 R KEGG: pol:Bpro_1213 hypothetical protein; hypothetical protein complement(4680442..4680996) Rhodopseudomonas palustris TIE-1 6412040 YP_001993328.1 CDS Rpal_4357 NC_011004.1 4681067 4681549 R activates RNA polymerase to cleave back-tracked RNA during elongational pausing; transcription elongation factor regulatory protein complement(4681067..4681549) Rhodopseudomonas palustris TIE-1 6412041 YP_001993329.1 CDS Rpal_4358 NC_011004.1 4681610 4682143 R KEGG: dge:Dgeo_1718 uracil-DNA glycosylase superfamily; uracil-DNA glycosylase superfamily complement(4681610..4682143) Rhodopseudomonas palustris TIE-1 6412042 YP_001993330.1 CDS Rpal_4359 NC_011004.1 4682144 4682545 R KEGG: bbt:BBta_5701 hypothetical protein; hypothetical protein complement(4682144..4682545) Rhodopseudomonas palustris TIE-1 6412043 YP_001993331.1 CDS Rpal_4360 NC_011004.1 4682617 4683633 R KEGG: azc:AZC_3914 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(4682617..4683633) Rhodopseudomonas palustris TIE-1 6412044 YP_001993332.1 CDS Rpal_4361 NC_011004.1 4683814 4685013 R TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); protein of unknown function DUF559; KEGG: bja:bll5746 probable tRNA/rRNA methyltransferase; RNA methyltransferase complement(4683814..4685013) Rhodopseudomonas palustris TIE-1 6412045 YP_001993333.1 CDS Rpal_4362 NC_011004.1 4685404 4686627 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 4685404..4686627 Rhodopseudomonas palustris TIE-1 6412046 YP_001993334.1 CDS Rpal_4363 NC_011004.1 4686758 4687090 D PFAM: protein of unknown function UPF0060; KEGG: bbt:BBta_2302 transmembrane protein; hypothetical protein 4686758..4687090 Rhodopseudomonas palustris TIE-1 6412047 YP_001993335.1 CDS Rpal_4364 NC_011004.1 4687260 4688099 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bur:Bcep18194_B0671 transcriptional regulator, AraC family; AraC family transcriptional regulator 4687260..4688099 Rhodopseudomonas palustris TIE-1 6412048 YP_001993336.1 CDS Rpal_4365 NC_011004.1 4688240 4690549 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_3498 outer membrane ferripyochelin receptor; TonB-dependent siderophore receptor 4688240..4690549 Rhodopseudomonas palustris TIE-1 6412049 YP_001993337.1 CDS Rpal_4366 NC_011004.1 4690570 4691100 D hypothetical protein 4690570..4691100 Rhodopseudomonas palustris TIE-1 6412050 YP_001993338.1 CDS Rpal_4367 NC_011004.1 4691097 4692209 D PFAM: PepSY-associated TM helix domain protein; KEGG: pfl:PFL_3499 PepSY-associated membrane protein; PepSY-associated TM helix domain-containing protein 4691097..4692209 Rhodopseudomonas palustris TIE-1 6412051 YP_001993339.1 CDS Rpal_4368 NC_011004.1 4692239 4693990 R TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pap:PSPA7_6319 probable potassium efflux transporter; potassium efflux system protein complement(4692239..4693990) Rhodopseudomonas palustris TIE-1 6412052 YP_001993340.1 CDS Rpal_4369 NC_011004.1 4694156 4695934 D PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: cak:Caul_4668 sodium/hydrogen exchanger; sodium/hydrogen exchanger 4694156..4695934 Rhodopseudomonas palustris TIE-1 6412053 YP_001993341.1 CDS Rpal_4370 NC_011004.1 4696164 4698122 D PFAM: protein of unknown function UPF0118; KEGG: bra:BRADO5979 conserved hypothetical protein; membrane protein, membrane transport protein; hypothetical protein 4696164..4698122 Rhodopseudomonas palustris TIE-1 6412054 YP_001993342.1 CDS Rpal_4371 NC_011004.1 4698219 4698980 R PFAM: GCN5-related N-acetyltransferase; KEGG: mrd:Mrad2831_0666 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(4698219..4698980) Rhodopseudomonas palustris TIE-1 6412055 YP_001993343.1 CDS alaS NC_011004.1 4698982 4701651 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(4698982..4701651) Rhodopseudomonas palustris TIE-1 6412056 YP_001993344.1 CDS gcvT NC_011004.1 4702104 4703252 D catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 4702104..4703252 Rhodopseudomonas palustris TIE-1 6412057 YP_001993345.1 CDS Rpal_4374 NC_011004.1 4703262 4703627 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 4703262..4703627 Rhodopseudomonas palustris TIE-1 6412058 YP_001993346.1 CDS Rpal_4375 NC_011004.1 4703795 4706701 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 4703795..4706701 Rhodopseudomonas palustris TIE-1 6412059 YP_001993347.1 CDS recA NC_011004.1 4707147 4708238 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(4707147..4708238) Rhodopseudomonas palustris TIE-1 6412060 YP_001993348.1 CDS Rpal_4377 NC_011004.1 4708497 4710422 R TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: bbt:BBta_3764 esterase/lipase/outer membrane autotransporter; outer membrane autotransporter barrel domain-containing protein complement(4708497..4710422) Rhodopseudomonas palustris TIE-1 6412061 YP_001993349.1 CDS Rpal_4378 NC_011004.1 4710940 4711170 D KEGG: nha:Nham_4592 hypothetical protein; hypothetical protein 4710940..4711170 Rhodopseudomonas palustris TIE-1 6412062 YP_001993350.1 CDS Rpal_4379 NC_011004.1 4711188 4711376 R hypothetical protein complement(4711188..4711376) Rhodopseudomonas palustris TIE-1 6412063 YP_001993351.1 CDS Rpal_4380 NC_011004.1 4711670 4711816 D KEGG: bbt:BBta_2403 hypothetical protein; hypothetical protein 4711670..4711816 Rhodopseudomonas palustris TIE-1 6412064 YP_001993352.1 CDS Rpal_4381 NC_011004.1 4712199 4712585 D KEGG: cel:W01B6.7 COLlagen; hypothetical protein 4712199..4712585 Rhodopseudomonas palustris TIE-1 6412065 YP_001993353.1 CDS Rpal_4382 NC_011004.1 4712843 4713019 D KEGG: bbt:BBta_5457 hypothetical protein; hypothetical protein 4712843..4713019 Rhodopseudomonas palustris TIE-1 6412066 YP_001993354.1 CDS Rpal_4383 NC_011004.1 4713095 4713760 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: bja:bll2244 probable cAMP-regulatory protein; Crp/Fnr family transcriptional regulator complement(4713095..4713760) Rhodopseudomonas palustris TIE-1 6412067 YP_001993355.1 CDS Rpal_4384 NC_011004.1 4713921 4714187 R KEGG: nha:Nham_1522 hypothetical protein; hypothetical protein complement(4713921..4714187) Rhodopseudomonas palustris TIE-1 6412068 YP_001993356.1 CDS Rpal_4385 NC_011004.1 4714228 4714356 R hypothetical protein complement(4714228..4714356) Rhodopseudomonas palustris TIE-1 6412069 YP_001993357.1 CDS Rpal_4386 NC_011004.1 4714485 4714946 D PFAM: thioesterase superfamily protein; KEGG: bja:blr5765 hypothetical protein; thioesterase superfamily protein 4714485..4714946 Rhodopseudomonas palustris TIE-1 6412070 YP_001993358.1 CDS Rpal_4387 NC_011004.1 4715001 4716458 R PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: nwi:Nwi_1274 peptidase C14, caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 complement(4715001..4716458) Rhodopseudomonas palustris TIE-1 6412071 YP_001993359.1 CDS Rpal_4388 NC_011004.1 4716682 4717842 D KEGG: nwi:Nwi_1273 hypothetical protein; hypothetical protein 4716682..4717842 Rhodopseudomonas palustris TIE-1 6412072 YP_001993360.1 CDS Rpal_4389 NC_011004.1 4717843 4718508 R PFAM: DSBA oxidoreductase; KEGG: bbt:BBta_5468 hypothetical protein; DSBA oxidoreductase complement(4717843..4718508) Rhodopseudomonas palustris TIE-1 6412073 YP_001993361.1 CDS Rpal_4390 NC_011004.1 4718581 4719402 R PFAM: helix-turn-helix domain protein; KEGG: bja:bll5781 hypothetical protein; XRE family transcriptional regulator complement(4718581..4719402) Rhodopseudomonas palustris TIE-1 6412074 YP_001993362.1 CDS Rpal_4391 NC_011004.1 4719538 4719951 D KEGG: bja:blr5786 integral membrane protein; integral membrane protein 4719538..4719951 Rhodopseudomonas palustris TIE-1 6412075 YP_001993363.1 CDS Rpal_4392 NC_011004.1 4720074 4720811 R PFAM: nuclear protein SET; KEGG: bra:BRADO5005 histone-lysine N-methyltransferase with a SET domain; nuclear protein SET complement(4720074..4720811) Rhodopseudomonas palustris TIE-1 6412076 YP_001993364.1 CDS Rpal_4393 NC_011004.1 4720953 4721582 D KEGG: bja:blr5788 hypothetical protein; hypothetical protein 4720953..4721582 Rhodopseudomonas palustris TIE-1 6412077 YP_001993365.1 CDS Rpal_4394 NC_011004.1 4721732 4722325 D KEGG: bja:blr5793 hypothetical protein; hypothetical protein 4721732..4722325 Rhodopseudomonas palustris TIE-1 6412078 YP_001993366.1 CDS Rpal_4395 NC_011004.1 4722333 4723043 R KEGG: sus:Acid_6846 NHL repeat containing protein; NHL repeat containing protein complement(4722333..4723043) Rhodopseudomonas palustris TIE-1 6412079 YP_001993367.1 CDS Rpal_4396 NC_011004.1 4723303 4723599 D KEGG: bbt:BBta_5480 exported protein of unknown function; hypothetical protein 4723303..4723599 Rhodopseudomonas palustris TIE-1 6412080 YP_001993368.1 CDS Rpal_4397 NC_011004.1 4723791 4725446 R TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: bja:bll5796 fumarate hydratase class I; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha complement(4723791..4725446) Rhodopseudomonas palustris TIE-1 6412081 YP_001993369.1 CDS Rpal_4398 NC_011004.1 4725553 4725837 R TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mrd:Mrad2831_6061 addiction module toxin, RelE/StbE family; RelE/StbE family addiction module toxin complement(4725553..4725837) Rhodopseudomonas palustris TIE-1 6412082 YP_001993370.1 CDS Rpal_4399 NC_011004.1 4725834 4726067 R KEGG: xau:Xaut_3830 hypothetical protein; hypothetical protein complement(4725834..4726067) Rhodopseudomonas palustris TIE-1 6412083 YP_001993371.1 CDS Rpal_4400 NC_011004.1 4726192 4726686 D KEGG: nha:Nham_2563 hypothetical protein; hypothetical protein 4726192..4726686 Rhodopseudomonas palustris TIE-1 6412084 YP_001993372.1 CDS Rpal_4401 NC_011004.1 4726903 4727073 D KEGG: ddi:DDB_0229895 Wiscott-Aldrich syndrome protein; hypothetical protein 4726903..4727073 Rhodopseudomonas palustris TIE-1 6412085 YP_001993373.1 CDS Rpal_4402 NC_011004.1 4727217 4727576 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: nha:Nham_2565 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 4727217..4727576 Rhodopseudomonas palustris TIE-1 6412086 YP_001993374.1 CDS Rpal_4403 NC_011004.1 4727734 4728444 R PFAM: glutathione S-transferase domain; KEGG: bja:bll5800 hypothetical protein; glutathione S-transferase domain-containing protein complement(4727734..4728444) Rhodopseudomonas palustris TIE-1 6412087 YP_001993375.1 CDS Rpal_4404 NC_011004.1 4728565 4729578 R PFAM: import inner membrane translocase subunit Tim44; KEGG: bja:bll5807 hypothetical protein; import inner membrane translocase subunit Tim44 complement(4728565..4729578) Rhodopseudomonas palustris TIE-1 6412088 YP_001993376.1 CDS Rpal_4405 NC_011004.1 4729917 4732559 R KEGG: nwi:Nwi_1138 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase complement(4729917..4732559) Rhodopseudomonas palustris TIE-1 6412089 YP_001993377.1 CDS flhB NC_011004.1 4732669 4733742 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(4732669..4733742) Rhodopseudomonas palustris TIE-1 6412090 YP_001993378.1 CDS fliR NC_011004.1 4733769 4734536 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR complement(4733769..4734536) Rhodopseudomonas palustris TIE-1 6412091 YP_001993379.1 CDS fliQ NC_011004.1 4734643 4734906 R FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar biosynthesis protein FliQ complement(4734643..4734906) Rhodopseudomonas palustris TIE-1 6412092 YP_001993380.1 CDS fliE NC_011004.1 4735067 4735372 R forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagella; flagellar hook-basal body protein FliE complement(4735067..4735372) Rhodopseudomonas palustris TIE-1 6412093 YP_001993381.1 CDS flgC NC_011004.1 4735408 4735833 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(4735408..4735833) Rhodopseudomonas palustris TIE-1 6412094 YP_001993382.1 CDS flgB NC_011004.1 4735855 4736262 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar basal body rod protein FlgB complement(4735855..4736262) Rhodopseudomonas palustris TIE-1 6412095 YP_001993383.1 CDS Rpal_4412 NC_011004.1 4736582 4737739 D KEGG: bbt:BBta_5498 exported protein of unknown function; hypothetical protein 4736582..4737739 Rhodopseudomonas palustris TIE-1 6412096 YP_001993384.1 CDS fliP NC_011004.1 4737736 4738500 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 4737736..4738500 Rhodopseudomonas palustris TIE-1 6412097 YP_001993385.1 CDS Rpal_4414 NC_011004.1 4738670 4742398 R KEGG: nha:Nham_1389 tetratricopeptide TPR_4 protein; hypothetical protein complement(4738670..4742398) Rhodopseudomonas palustris TIE-1 6412098 YP_001993386.1 CDS Rpal_4415 NC_011004.1 4742875 4743204 D KEGG: bja:blr5534 hypothetical protein; hypothetical protein 4742875..4743204 Rhodopseudomonas palustris TIE-1 6412099 YP_001993387.1 CDS Rpal_4416 NC_011004.1 4743234 4744757 R PFAM: carboxylesterase type B; KEGG: cmi:CMM_2085 carboxylesterase; carboxylesterase type B complement(4743234..4744757) Rhodopseudomonas palustris TIE-1 6412100 YP_001993388.1 CDS Rpal_4417 NC_011004.1 4744783 4745406 R PFAM: regulatory protein TetR; KEGG: reh:H16_A3218 transcriptional regulator, TetR/AcrR-family; TetR family transcriptional regulator complement(4744783..4745406) Rhodopseudomonas palustris TIE-1 6412101 YP_001993389.1 CDS Rpal_4418 NC_011004.1 4745584 4746348 R KEGG: bra:BRADO5033 conserved hypothetical protein; signal peptide; hypothetical protein complement(4745584..4746348) Rhodopseudomonas palustris TIE-1 6412102 YP_001993390.1 CDS Rpal_4419 NC_011004.1 4746345 4746773 R KEGG: bja:bll5824 hypothetical protein; hypothetical protein complement(4746345..4746773) Rhodopseudomonas palustris TIE-1 6412103 YP_001993391.1 CDS fliM NC_011004.1 4746770 4747972 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar motor switch protein FliM complement(4746770..4747972) Rhodopseudomonas palustris TIE-1 6412104 YP_001993392.1 CDS fliL NC_011004.1 4747979 4748479 R interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL complement(4747979..4748479) Rhodopseudomonas palustris TIE-1 6412105 YP_001993393.1 CDS flgF NC_011004.1 4748844 4749605 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar basal body rod protein FlgF 4748844..4749605 Rhodopseudomonas palustris TIE-1 6412106 YP_001993394.1 CDS flgG NC_011004.1 4749618 4750406 D makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella; flagellar basal body rod protein FlgG 4749618..4750406 Rhodopseudomonas palustris TIE-1 6412107 YP_001993395.1 CDS flgA NC_011004.1 4750419 4751447 D required for the assembly of the flagellar basal body P-ring; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA 4750419..4751447 Rhodopseudomonas palustris TIE-1 6412108 YP_001993396.1 CDS flgH NC_011004.1 4751453 4752211 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 4751453..4752211 Rhodopseudomonas palustris TIE-1 6412109 YP_001993397.1 CDS Rpal_4426 NC_011004.1 4752387 4755539 R TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: atc:AGR_L_3217 RND multidrug efflux transporter MexD; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(4752387..4755539) Rhodopseudomonas palustris TIE-1 6412110 YP_001993398.1 CDS Rpal_4427 NC_011004.1 4755552 4756736 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: smd:Smed_3399 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit complement(4755552..4756736) Rhodopseudomonas palustris TIE-1 6412111 YP_001993399.1 CDS Rpal_4428 NC_011004.1 4756892 4757455 D PFAM: regulatory protein TetR; KEGG: atc:AGR_C_4219 hypothetical protein; TetR family transcriptional regulator 4756892..4757455 Rhodopseudomonas palustris TIE-1 6412112 YP_001993400.1 CDS Rpal_4429 NC_011004.1 4757651 4757932 D KEGG: nha:Nham_0415 hypothetical protein; hypothetical protein 4757651..4757932 Rhodopseudomonas palustris TIE-1 6412113 YP_001993401.1 CDS Rpal_4430 NC_011004.1 4758042 4758470 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: nha:Nham_1346 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator complement(4758042..4758470) Rhodopseudomonas palustris TIE-1 6412114 YP_001993402.1 CDS fliX NC_011004.1 4758591 4759001 R regulator of the sigma 54 transcriptional activator FlbD; represses FlbD when the class II flagellar structure is absent and activates FlbD when the structure is present; flagellar assembly regulator FliX complement(4758591..4759001) Rhodopseudomonas palustris TIE-1 6412115 YP_001993403.1 CDS flgI NC_011004.1 4759300 4760421 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 4759300..4760421 Rhodopseudomonas palustris TIE-1 6412116 YP_001993404.1 CDS Rpal_4433 NC_011004.1 4760421 4760756 D KEGG: bja:blr5839 chemotactic signal-response protein CheL; chemotactic signal-response protein CheL 4760421..4760756 Rhodopseudomonas palustris TIE-1 6412117 YP_001993405.1 CDS Rpal_4434 NC_011004.1 4760774 4761265 D KEGG: nwi:Nwi_1109 hypothetical protein; hypothetical protein 4760774..4761265 Rhodopseudomonas palustris TIE-1 6412118 YP_001993406.1 CDS Rpal_4435 NC_011004.1 4761446 4761817 D KEGG: nha:Nham_1340 hypothetical protein; hypothetical protein 4761446..4761817 Rhodopseudomonas palustris TIE-1 6412119 YP_001993407.1 CDS flaF NC_011004.1 4761934 4762302 R acts as an activator of flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar biosynthesis regulatory protein FlaF complement(4761934..4762302) Rhodopseudomonas palustris TIE-1 6412120 YP_001993408.1 CDS flbT NC_011004.1 4762306 4762686 R post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA; Bradyrhizobium has one thick and several thin flagella, the Bradyrhizobium protein in this cluster is associated with the thin flagella; flagellar biosynthesis repressor FlbT complement(4762306..4762686) Rhodopseudomonas palustris TIE-1 6412121 YP_001993409.1 CDS Rpal_4438 NC_011004.1 4762902 4765562 R structural flagella protein; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellin complement(4762902..4765562) Rhodopseudomonas palustris TIE-1 6412122 YP_001993410.1 CDS Rpal_4439 NC_011004.1 4766085 4768232 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bra:BRADO1360 O-linked N-acetylglucosamine transferase, SPINDLY family; TPR domain protein; hypothetical protein 4766085..4768232 Rhodopseudomonas palustris TIE-1 6412123 YP_001993411.1 CDS Rpal_4440 NC_011004.1 4768246 4770048 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sus:Acid_2243 thiamine pyrophosphate enzyme TPP binding domain protein; thiamine pyrophosphate protein TPP binding domain-containing protein complement(4768246..4770048) Rhodopseudomonas palustris TIE-1 6412124 YP_001993412.1 CDS Rpal_4441 NC_011004.1 4770072 4770878 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vha:VIBHAR_03037 hypothetical protein; short-chain dehydrogenase/reductase SDR complement(4770072..4770878) Rhodopseudomonas palustris TIE-1 6412125 YP_001993413.1 CDS Rpal_4442 NC_011004.1 4770875 4771795 R PFAM: nucleotidyl transferase; KEGG: bbt:BBta_5632 sugar-phosphate nucleotidyl transferase; nucleotidyl transferase complement(4770875..4771795) Rhodopseudomonas palustris TIE-1 6412126 YP_001993414.1 CDS Rpal_4443 NC_011004.1 4771792 4773276 R TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: bra:BRADO5164 bifunctional enzyme (sugar kinase/cytidylyltransferase); cytidyltransferase-related domain-containing protein complement(4771792..4773276) Rhodopseudomonas palustris TIE-1 6412127 YP_001993415.1 CDS Rpal_4444 NC_011004.1 4773282 4774337 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_5638 alcohol dehydrogenase (zinc-binding); alcohol dehydrogenase zinc-binding domain-containing protein complement(4773282..4774337) Rhodopseudomonas palustris TIE-1 6412128 YP_001993416.1 CDS Rpal_4445 NC_011004.1 4774488 4775540 R PFAM: Transketolase central region; Transketolase domain protein; KEGG: cbd:COXBU7E912_0706 pyruvate dehydrogenase (acetyl-transferring) E1 component, beta subunit; transketolase complement(4774488..4775540) Rhodopseudomonas palustris TIE-1 6412129 YP_001993417.1 CDS Rpal_4446 NC_011004.1 4775551 4776528 R PFAM: dehydrogenase E1 component; KEGG: cbu:CBU_0693 dehydrogenase, E1 component, alpha subunit; dehydrogenase E1 component complement(4775551..4776528) Rhodopseudomonas palustris TIE-1 6412130 YP_001993418.1 CDS Rpal_4447 NC_011004.1 4776525 4777184 R PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: cbd:COXBU7E912_0696 methyltransferase; type 11 methyltransferase complement(4776525..4777184) Rhodopseudomonas palustris TIE-1 6412131 YP_001993419.1 CDS Rpal_4448 NC_011004.1 4777193 4778230 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bbt:BBta_5635 dTDP-glucose 4,6-dehydratase; NAD-dependent epimerase/dehydratase complement(4777193..4778230) Rhodopseudomonas palustris TIE-1 6412132 YP_001993420.1 CDS Rpal_4449 NC_011004.1 4778227 4779165 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bbt:BBta_5633 sugar-nucleotide epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(4778227..4779165) Rhodopseudomonas palustris TIE-1 6412133 YP_001993421.1 CDS Rpal_4450 NC_011004.1 4779307 4779975 R PFAM: sugar isomerase (SIS); KEGG: bja:bll5420 phosphoheptose isomerase; sugar isomerase (SIS) complement(4779307..4779975) Rhodopseudomonas palustris TIE-1 6412134 YP_001993422.1 CDS Rpal_4451 NC_011004.1 4780098 4781018 R TIGRFAM: methyltransferase FkbM family; KEGG: nph:NP3626A homolog 5 to S-adenosylmethionine-dependent methyltransferase 3; methyltransferase FkbM family protein complement(4780098..4781018) Rhodopseudomonas palustris TIE-1 6412135 YP_001993423.1 CDS Rpal_4452 NC_011004.1 4781174 4783840 R structural flagella protein; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellin complement(4781174..4783840) Rhodopseudomonas palustris TIE-1 6412136 YP_001993424.1 CDS Rpal_4453 NC_011004.1 4784148 4785755 R KEGG: nwi:Nwi_1101 hypothetical protein; hypothetical protein complement(4784148..4785755) Rhodopseudomonas palustris TIE-1 6412137 YP_001993425.1 CDS Rpal_4454 NC_011004.1 4785764 4787635 R TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: nha:Nham_1332 flagellar hook-associated protein; flagellar hook-associated protein FlgK complement(4785764..4787635) Rhodopseudomonas palustris TIE-1 6412138 YP_001993426.1 CDS Rpal_4455 NC_011004.1 4787674 4789470 R PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: nwi:Nwi_1099 flagellar basal body rod protein, FlaE; hypothetical protein complement(4787674..4789470) Rhodopseudomonas palustris TIE-1 6412139 YP_001993427.1 CDS Rpal_4456 NC_011004.1 4789740 4793987 D KEGG: bbt:BBta_5808 sensor histidine kinase with multiple PAS and a response regulator receiver domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 4789740..4793987 Rhodopseudomonas palustris TIE-1 6412140 YP_001993428.1 CDS Rpal_4457 NC_011004.1 4794177 4794449 D KEGG: bbt:BBta_2392 hypothetical protein; hypothetical protein 4794177..4794449 Rhodopseudomonas palustris TIE-1 6412141 YP_001993429.1 CDS Rpal_4458 NC_011004.1 4794486 4795979 R KEGG: cbd:COXBU7E912_1484 hypothetical protein; hypothetical protein complement(4794486..4795979) Rhodopseudomonas palustris TIE-1 6412142 YP_001993430.1 CDS Rpal_4459 NC_011004.1 4796131 4796628 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(4796131..4796628) Rhodopseudomonas palustris TIE-1 6412143 YP_001993431.1 CDS Rpal_4460 NC_011004.1 4796763 4798223 R PFAM: FAD dependent oxidoreductase; KEGG: bja:bll5856 hypothetical protein; FAD dependent oxidoreductase complement(4796763..4798223) Rhodopseudomonas palustris TIE-1 6412144 YP_001993432.1 CDS Rpal_4461 NC_011004.1 4798364 4798894 D PFAM: phosphoglycerate mutase; KEGG: nha:Nham_1328 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase, SixA 4798364..4798894 Rhodopseudomonas palustris TIE-1 6412145 YP_001993433.1 CDS Rpal_4462 NC_011004.1 4798938 4799369 D PFAM: UspA domain protein; KEGG: bbt:BBta_5541 universal stress protein (Usp); UspA domain-containing protein 4798938..4799369 Rhodopseudomonas palustris TIE-1 6412146 YP_001993434.1 CDS Rpal_4463 NC_011004.1 4799392 4800021 R KEGG: nha:Nham_1326 hypothetical protein; hypothetical protein complement(4799392..4800021) Rhodopseudomonas palustris TIE-1 6412147 YP_001993435.1 CDS Rpal_4464 NC_011004.1 4800137 4800577 D KEGG: nha:Nham_1325 hypothetical protein; hypothetical protein 4800137..4800577 Rhodopseudomonas palustris TIE-1 6412148 YP_001993436.1 CDS Rpal_4465 NC_011004.1 4800678 4801184 R PFAM: protein of unknown function DUF892; KEGG: bja:bll5866 hypothetical protein; hypothetical protein complement(4800678..4801184) Rhodopseudomonas palustris TIE-1 6412149 YP_001993437.1 CDS Rpal_4466 NC_011004.1 4801591 4802682 D KEGG: bra:BRADO5076 hypothetical protein; hypothetical protein 4801591..4802682 Rhodopseudomonas palustris TIE-1 6412150 YP_001993438.1 CDS Rpal_4467 NC_011004.1 4802776 4804848 D KEGG: bbt:BBta_5548 exported protein of unknown function; hypothetical protein 4802776..4804848 Rhodopseudomonas palustris TIE-1 6412151 YP_001993439.1 CDS Rpal_4468 NC_011004.1 4804995 4805651 R KEGG: bja:bll5882 hypothetical protein; hypothetical protein complement(4804995..4805651) Rhodopseudomonas palustris TIE-1 6412152 YP_001993440.1 CDS Rpal_4469 NC_011004.1 4805741 4807009 R KEGG: aeh:Mlg_2800 O-antigen polymerase; hypothetical protein complement(4805741..4807009) Rhodopseudomonas palustris TIE-1 6412153 YP_001993441.1 CDS Rpal_4470 NC_011004.1 4807017 4808342 R PFAM: glycosyl transferase group 1; KEGG: bte:BTH_I1330 possible glycosyltransferase WbpX; group 1 glycosyl transferase complement(4807017..4808342) Rhodopseudomonas palustris TIE-1 6412154 YP_001993442.1 CDS Rpal_4471 NC_011004.1 4808495 4809556 D PFAM: glycosyl transferase family 2; KEGG: ppd:Ppro_3227 glycosyl transferase, family 2; family 2 glycosyl transferase 4808495..4809556 Rhodopseudomonas palustris TIE-1 6412155 YP_001993443.1 CDS Rpal_4472 NC_011004.1 4809625 4810611 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: nha:Nham_2780 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 4809625..4810611 Rhodopseudomonas palustris TIE-1 6412156 YP_001993444.1 CDS Rpal_4473 NC_011004.1 4810611 4811594 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: nha:Nham_2781 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 4810611..4811594 Rhodopseudomonas palustris TIE-1 6412157 YP_001993445.1 CDS Rpal_4474 NC_011004.1 4811616 4812890 R PFAM: Chloride channel core; KEGG: bra:BRADO3095 H(+)/Cl(-) exchange transporter; chloride channel protein complement(4811616..4812890) Rhodopseudomonas palustris TIE-1 6412158 YP_001993446.1 CDS Rpal_4475 NC_011004.1 4813058 4814086 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: nwi:Nwi_1089 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin-disulfide reductase complement(4813058..4814086) Rhodopseudomonas palustris TIE-1 6412159 YP_001993447.1 CDS Rpal_4476 NC_011004.1 4814276 4814704 D PFAM: thioesterase superfamily protein; KEGG: bja:blr5884 hypothetical protein; thioesterase superfamily protein 4814276..4814704 Rhodopseudomonas palustris TIE-1 6412160 YP_001993448.1 CDS Rpal_4477 NC_011004.1 4814883 4815203 R PFAM: ferredoxin; KEGG: bbt:BBta_5552 2Fe-2S ferredoxin (FdII); ferredoxin complement(4814883..4815203) Rhodopseudomonas palustris TIE-1 6412161 YP_001993449.1 CDS Rpal_4478 NC_011004.1 4815300 4815659 R PFAM: Hpt domain protein; KEGG: bja:bll5886 two-component hybrid sensor and regulator; Hpt protein complement(4815300..4815659) Rhodopseudomonas palustris TIE-1 6412162 YP_001993450.1 CDS Rpal_4479 NC_011004.1 4815964 4816116 D hypothetical protein 4815964..4816116 Rhodopseudomonas palustris TIE-1 6412163 YP_001993451.1 CDS Rpal_4480 NC_011004.1 4816100 4822177 D KEGG: bra:BRADO5083 conserved hypothetical protein; methyl-accepting chemotaxis protein; hypothetical protein 4816100..4822177 Rhodopseudomonas palustris TIE-1 6412164 YP_001993452.1 CDS Rpal_4481 NC_011004.1 4822603 4824087 D PFAM: Amidase; KEGG: pla:Plav_2598 amidase; amidase 4822603..4824087 Rhodopseudomonas palustris TIE-1 6412165 YP_001993453.1 CDS Rpal_4482 NC_011004.1 4824332 4825135 D KEGG: bja:blr3164 hypothetical protein; hypothetical protein 4824332..4825135 Rhodopseudomonas palustris TIE-1 6412166 YP_001993454.1 CDS Rpal_4483 NC_011004.1 4825320 4826213 R PFAM: mammalian cell entry related domain protein; KEGG: bja:bll5892 hypothetical protein; mammalian cell entry related domain-containing protein complement(4825320..4826213) Rhodopseudomonas palustris TIE-1 6412167 YP_001993455.1 CDS Rpal_4484 NC_011004.1 4826351 4827124 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO5085 ABC transporter (ATP-binding protein); ABC transporter complement(4826351..4827124) Rhodopseudomonas palustris TIE-1 6412168 YP_001993456.1 CDS Rpal_4485 NC_011004.1 4827127 4828278 R PFAM: protein of unknown function DUF140; KEGG: nha:Nham_1315 protein of unknown function DUF140; hypothetical protein complement(4827127..4828278) Rhodopseudomonas palustris TIE-1 6412169 YP_001993457.1 CDS Rpal_4486 NC_011004.1 4828383 4829378 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bja:blr5895 hypothetical protein; mandelate racemase/muconate lactonizing protein 4828383..4829378 Rhodopseudomonas palustris TIE-1 6412170 YP_001993458.1 CDS Rpal_4487 NC_011004.1 4829348 4830556 R PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_5559 permease of the major facilitator superfamily; major facilitator superfamily protein complement(4829348..4830556) Rhodopseudomonas palustris TIE-1 6412171 YP_001993459.1 CDS Rpal_4488 NC_011004.1 4830633 4832090 D KEGG: bra:BRADO5089 hypothetical protein; hypothetical protein 4830633..4832090 Rhodopseudomonas palustris TIE-1 6412172 YP_001993460.1 CDS Rpal_4489 NC_011004.1 4832120 4833115 R PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bbt:BBta_5562 threonine dehydratase; pyridoxal-5'-phosphate-dependent protein beta subunit complement(4832120..4833115) Rhodopseudomonas palustris TIE-1 6412173 YP_001993461.1 CDS Rpal_4490 NC_011004.1 4833165 4834220 R PFAM: glycosyl transferase group 1; KEGG: nha:Nham_1312 glycosyl transferase, group 1; group 1 glycosyl transferase complement(4833165..4834220) Rhodopseudomonas palustris TIE-1 6412174 YP_001993462.1 CDS Rpal_4491 NC_011004.1 4834220 4835017 R PFAM: metallophosphoesterase; KEGG: nha:Nham_1311 metallophosphoesterase; metallophosphoesterase complement(4834220..4835017) Rhodopseudomonas palustris TIE-1 6412175 YP_001993463.1 CDS Rpal_4492 NC_011004.1 4835071 4835727 R PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mrd:Mrad2831_0345 phosphatidylethanolamine N-methyltransferase; phosphatidylethanolamine N-methyltransferase complement(4835071..4835727) Rhodopseudomonas palustris TIE-1 6412176 YP_001993464.1 CDS Rpal_4493 NC_011004.1 4835820 4836620 R KEGG: nha:Nham_1310 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase complement(4835820..4836620) Rhodopseudomonas palustris TIE-1 6412177 YP_001993465.1 CDS Rpal_4494 NC_011004.1 4836758 4837003 D PFAM: regulatory protein AsnC/Lrp family; KEGG: nha:Nham_1309 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4836758..4837003 Rhodopseudomonas palustris TIE-1 6412178 YP_001993466.1 CDS Rpal_4495 NC_011004.1 4837011 4837940 R KEGG: bbt:BBta_5605 diheme cytochrome C-type; gluconate 2-dehydrogenase (acceptor) complement(4837011..4837940) Rhodopseudomonas palustris TIE-1 6412179 YP_001993467.1 CDS Rpal_4496 NC_011004.1 4837974 4838423 R PFAM: cytochrome C prime; KEGG: bbt:BBta_5606 cytochrome C, class II; cytochrome C prime complement(4837974..4838423) Rhodopseudomonas palustris TIE-1 6412180 YP_001993468.1 CDS Rpal_4497 NC_011004.1 4838535 4840856 R PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bra:BRADO5140 aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein; carbon monoxide dehydrogenase complement(4838535..4840856) Rhodopseudomonas palustris TIE-1 6412181 YP_001993469.1 CDS Rpal_4498 NC_011004.1 4841102 4841395 R KEGG: nha:Nham_2128 hypothetical protein; hypothetical protein complement(4841102..4841395) Rhodopseudomonas palustris TIE-1 6412182 YP_001993470.1 CDS Rpal_4499 NC_011004.1 4841622 4843631 D PFAM: carbamoyltransferase; KEGG: nha:Nham_2127 carbamoyltransferase; carbamoyltransferase 4841622..4843631 Rhodopseudomonas palustris TIE-1 6412183 YP_001993471.1 CDS Rpal_4500 NC_011004.1 4843632 4845161 R TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: bbt:BBta_5611 virulence factor MviN-like protein; integral membrane protein MviN complement(4843632..4845161) Rhodopseudomonas palustris TIE-1 6412184 YP_001993472.1 CDS Rpal_4501 NC_011004.1 4845347 4846498 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bbt:BBta_5614 aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(4845347..4846498) Rhodopseudomonas palustris TIE-1 6412185 YP_001993473.1 CDS Rpal_4502 NC_011004.1 4846556 4847551 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bja:bll5918 dehydrogenase; oxidoreductase domain-containing protein complement(4846556..4847551) Rhodopseudomonas palustris TIE-1 6412186 YP_001993474.1 CDS Rpal_4503 NC_011004.1 4847692 4848684 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bja:bll5920 UDP-glucuronic acid epimerase; NAD-dependent epimerase/dehydratase complement(4847692..4848684) Rhodopseudomonas palustris TIE-1 6412187 YP_001993475.1 CDS Rpal_4504 NC_011004.1 4848867 4849826 D KEGG: bja:blr5921 hypothetical protein; hypothetical protein 4848867..4849826 Rhodopseudomonas palustris TIE-1 6412188 YP_001993476.1 CDS Rpal_4505 NC_011004.1 4849884 4850900 D PFAM: glycosyl transferase family 4; KEGG: bbt:BBta_5665 undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase; glycosyl transferase family protein 4849884..4850900 Rhodopseudomonas palustris TIE-1 6412189 YP_001993477.1 CDS Rpal_4506 NC_011004.1 4850913 4852838 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: bja:bll5925 capsular polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD complement(4850913..4852838) Rhodopseudomonas palustris TIE-1 6412190 YP_001993478.1 CDS Rpal_4507 NC_011004.1 4852879 4854351 R TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: bbt:BBta_5668 kinase/ sugar nucleotide transferase; rfaE bifunctional protein complement(4852879..4854351) Rhodopseudomonas palustris TIE-1 6412191 YP_001993479.1 CDS Rpal_4508 NC_011004.1 4854376 4855356 R TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: bja:bll5928 probable ADP-L-glycero-D-manno-heptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase complement(4854376..4855356) Rhodopseudomonas palustris TIE-1 6412192 YP_001993480.1 CDS Rpal_4509 NC_011004.1 4855540 4856616 D TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: bra:BRADO5203 ADP-heptose--LPS heptosyltransferase II; lipopolysaccharide heptosyltransferase II 4855540..4856616 Rhodopseudomonas palustris TIE-1 6412193 YP_001993481.1 CDS Rpal_4510 NC_011004.1 4856687 4857274 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 4856687..4857274 Rhodopseudomonas palustris TIE-1 6412194 YP_001993482.1 CDS Rpal_4511 NC_011004.1 4857271 4857813 D TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: polynucleotide kinase 3 phosphatase central region; KEGG: nha:Nham_1295 HAD-superfamily hydrolase subfamily IIIA; histidinol-phosphate phosphatase family protein 4857271..4857813 Rhodopseudomonas palustris TIE-1 6412195 YP_001993483.1 CDS Rpal_4512 NC_011004.1 4857810 4858754 R TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: nha:Nham_1294 lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase I complement(4857810..4858754) Rhodopseudomonas palustris TIE-1 6412196 YP_001993484.1 CDS Rpal_4513 NC_011004.1 4858937 4859950 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bja:blr5931 UDP-galactose 4-epimerase; UDP-glucose 4-epimerase 4858937..4859950 Rhodopseudomonas palustris TIE-1 6412197 YP_001993485.1 CDS Rpal_4514 NC_011004.1 4860072 4861874 D PFAM: ABC transporter transmembrane region; ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_1292 ABC transporter; ABC transporter 4860072..4861874 Rhodopseudomonas palustris TIE-1 6412198 YP_001993486.1 CDS Rpal_4515 NC_011004.1 4861936 4862637 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:blr5933 hypothetical protein; fumarylacetoacetate (FAA) hydrolase 4861936..4862637 Rhodopseudomonas palustris TIE-1 6412199 YP_001993487.1 CDS Rpal_4517 NC_011004.1 4863121 4869081 D KEGG: nwi:Nwi_0909 conserved hypothetical protein, DNA helicase; hypothetical protein 4863121..4869081 Rhodopseudomonas palustris TIE-1 6412201 YP_001993488.1 CDS Rpal_4518 NC_011004.1 4869088 4870125 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_2825 PAS:GGDEF; diguanylate cyclase complement(4869088..4870125) Rhodopseudomonas palustris TIE-1 6412202 YP_001993489.1 CDS Rpal_4519 NC_011004.1 4870444 4870902 D KEGG: bja:bll0174 hypothetical protein; hypothetical protein 4870444..4870902 Rhodopseudomonas palustris TIE-1 6412203 YP_001993490.1 CDS Rpal_4520 NC_011004.1 4870942 4871652 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: bja:bll6060 catabolite gene activator; Crp/Fnr family transcriptional regulator complement(4870942..4871652) Rhodopseudomonas palustris TIE-1 6412204 YP_001993491.1 CDS Rpal_4521 NC_011004.1 4871799 4872335 R hypothetical protein complement(4871799..4872335) Rhodopseudomonas palustris TIE-1 6412205 YP_001993492.1 CDS Rpal_4522 NC_011004.1 4872338 4872571 R hypothetical protein complement(4872338..4872571) Rhodopseudomonas palustris TIE-1 6412206 YP_001993493.1 CDS Rpal_4523 NC_011004.1 4872576 4873619 R PFAM: radical SAM domain protein; KEGG: dau:Daud_1343 radical SAM domain protein; radical SAM domain-containing protein complement(4872576..4873619) Rhodopseudomonas palustris TIE-1 6412207 YP_001993494.1 CDS Rpal_4524 NC_011004.1 4873742 4877059 D PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sme:SMa1591 adenylate cyclase; adenylate/guanylate cyclase 4873742..4877059 Rhodopseudomonas palustris TIE-1 6412208 YP_001993495.1 CDS Rpal_4525 NC_011004.1 4877272 4879347 D PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bbt:BBta_4919 DEAD-box cold-shock protein, ATP-independent RNA helicase; DEAD/DEAH box helicase 4877272..4879347 Rhodopseudomonas palustris TIE-1 6412209 YP_001993496.1 CDS Rpal_4526 NC_011004.1 4879558 4880829 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:bll2940 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(4879558..4880829) Rhodopseudomonas palustris TIE-1 6412210 YP_001993497.1 CDS Rpal_4527 NC_011004.1 4881477 4881614 D KEGG: bbt:BBta_7669 hypothetical protein; hypothetical protein 4881477..4881614 Rhodopseudomonas palustris TIE-1 6412211 YP_001993498.1 CDS Rpal_4528 NC_011004.1 4882138 4882269 D hypothetical protein 4882138..4882269 Rhodopseudomonas palustris TIE-1 6412212 YP_001993499.1 CDS rpsU NC_011004.1 4882481 4882756 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(4882481..4882756) Rhodopseudomonas palustris TIE-1 6412213 YP_001993500.1 CDS Rpal_4530 NC_011004.1 4883033 4883398 R KEGG: bbt:BBta_3101 hypothetical protein; hypothetical protein complement(4883033..4883398) Rhodopseudomonas palustris TIE-1 6412214 YP_001993501.1 CDS Rpal_4531 NC_011004.1 4883428 4883601 R hypothetical protein complement(4883428..4883601) Rhodopseudomonas palustris TIE-1 6412215 YP_001993502.1 CDS Rpal_4532 NC_011004.1 4883900 4884169 D KEGG: nha:Nham_2472 hypothetical protein; hypothetical protein 4883900..4884169 Rhodopseudomonas palustris TIE-1 6412216 YP_001993503.1 CDS Rpal_4533 NC_011004.1 4884156 4884254 D hypothetical protein 4884156..4884254 Rhodopseudomonas palustris TIE-1 6412217 YP_001993504.1 CDS Rpal_4534 NC_011004.1 4884370 4884633 D KEGG: bbt:BBta_5569 hypothetical protein; hypothetical protein 4884370..4884633 Rhodopseudomonas palustris TIE-1 6412218 YP_001993505.1 CDS Rpal_4535 NC_011004.1 4884703 4885458 D PFAM: GAF domain protein; KEGG: swi:Swit_5219 signal transduction histidine kinase; GAF sensor protein 4884703..4885458 Rhodopseudomonas palustris TIE-1 6412219 YP_001993506.1 CDS Rpal_4536 NC_011004.1 4885459 4886751 D PFAM: GAF domain protein; HWE histidine kinase; KEGG: gox:GOX1619 two component sensor histidine kinase; signal transduction histidine kinase 4885459..4886751 Rhodopseudomonas palustris TIE-1 6412220 YP_001993507.1 CDS Rpal_4537 NC_011004.1 4886748 4887125 D PFAM: response regulator receiver; KEGG: mlo:mll9592 response regulator; response regulator receiver protein 4886748..4887125 Rhodopseudomonas palustris TIE-1 6412221 YP_001993508.1 CDS Rpal_4538 NC_011004.1 4887472 4889604 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Autotransporter beta- domain protein; KEGG: azc:AZC_3227 outer membrane autotransporter barrel precursor; outer membrane autotransporter barrel domain-containing protein 4887472..4889604 Rhodopseudomonas palustris TIE-1 6412222 YP_001993509.1 CDS Rpal_4539 NC_011004.1 4889767 4890222 R PFAM: thioesterase superfamily protein; KEGG: sen:SACE_1886 phenylacetic acid degradation-related protein; thioesterase superfamily protein complement(4889767..4890222) Rhodopseudomonas palustris TIE-1 6412223 YP_001993510.1 CDS Rpal_4540 NC_011004.1 4890340 4891026 D PFAM: regulatory protein DeoR; hypothetical protein; KEGG: pla:Plav_0108 helix-turn-helix type 11 domain protein; hypothetical protein 4890340..4891026 Rhodopseudomonas palustris TIE-1 6412224 YP_001993511.1 CDS Rpal_4542 NC_011004.1 4893575 4893832 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rsq:Rsph17025_4105 hypothetical protein; prevent-host-death family protein 4893575..4893832 Rhodopseudomonas palustris TIE-1 6412226 YP_001993512.1 CDS Rpal_4543 NC_011004.1 4893832 4894242 D PFAM: PilT protein domain protein; KEGG: pna:Pnap_1213 PilT protein domain protein; PilT protein domain-containing protein 4893832..4894242 Rhodopseudomonas palustris TIE-1 6412227 YP_001993513.1 CDS Rpal_4544 NC_011004.1 4894362 4895021 D hypothetical protein 4894362..4895021 Rhodopseudomonas palustris TIE-1 6412228 YP_001993514.1 CDS Rpal_4545 NC_011004.1 4895398 4896807 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(4895398..4896807) Rhodopseudomonas palustris TIE-1 6412229 YP_001993515.1 CDS Rpal_4546 NC_011004.1 4897068 4898264 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(4897068..4898264) Rhodopseudomonas palustris TIE-1 6412230 YP_001993516.1 CDS Rpal_4547 NC_011004.1 4898328 4899680 R KEGG: bra:BRADO5240 hypothetical protein; hypothetical protein complement(4898328..4899680) Rhodopseudomonas palustris TIE-1 6412231 YP_001993517.1 CDS Rpal_4548 NC_011004.1 4899887 4901197 D KEGG: bja:bll8129 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 4899887..4901197 Rhodopseudomonas palustris TIE-1 6412232 YP_001993518.1 CDS Rpal_4549 NC_011004.1 4901465 4902646 D PFAM: extracellular ligand-binding receptor; KEGG: xau:Xaut_0893 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4901465..4902646 Rhodopseudomonas palustris TIE-1 6412233 YP_001993519.1 CDS Rpal_4550 NC_011004.1 4902795 4903667 D PFAM: inner-membrane translocator; KEGG: xau:Xaut_0892 inner-membrane translocator; inner-membrane translocator 4902795..4903667 Rhodopseudomonas palustris TIE-1 6412234 YP_001993520.1 CDS Rpal_4551 NC_011004.1 4903671 4904615 D PFAM: inner-membrane translocator; KEGG: xau:Xaut_0891 inner-membrane translocator; inner-membrane translocator 4903671..4904615 Rhodopseudomonas palustris TIE-1 6412235 YP_001993521.1 CDS Rpal_4552 NC_011004.1 4904612 4905394 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: xau:Xaut_0890 ABC transporter; ABC transporter 4904612..4905394 Rhodopseudomonas palustris TIE-1 6412236 YP_001993522.1 CDS Rpal_4553 NC_011004.1 4905387 4906091 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: xau:Xaut_0889 ABC transporter; ABC transporter 4905387..4906091 Rhodopseudomonas palustris TIE-1 6412237 YP_001993523.1 CDS Rpal_4554 NC_011004.1 4906324 4907445 R catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(4906324..4907445) Rhodopseudomonas palustris TIE-1 6412238 YP_001993524.1 CDS Rpal_4555 NC_011004.1 4907462 4908178 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll5949 ABC transporter ATP-binding protein; ABC transporter complement(4907462..4908178) Rhodopseudomonas palustris TIE-1 6412239 YP_001993525.1 CDS Rpal_4556 NC_011004.1 4908199 4908951 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll5950 ABC transporter ATP-binding protein; ABC transporter complement(4908199..4908951) Rhodopseudomonas palustris TIE-1 6412240 YP_001993526.1 CDS Rpal_4557 NC_011004.1 4908948 4909973 R PFAM: inner-membrane translocator; KEGG: bja:bll5951 ABC transporter permease protein; inner-membrane translocator complement(4908948..4909973) Rhodopseudomonas palustris TIE-1 6412241 YP_001993527.1 CDS Rpal_4558 NC_011004.1 4909973 4910839 R PFAM: inner-membrane translocator; KEGG: bra:BRADO5253 high-affinity branched-chain amino acid transport system permease protein; inner-membrane translocator complement(4909973..4910839) Rhodopseudomonas palustris TIE-1 6412242 YP_001993528.1 CDS Rpal_4559 NC_011004.1 4910990 4912168 R PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO5254 conserved hypothetical protein; exported protein; ABC-type branched-chain amino acid transport systems; branched-chain amino acid ABC transporter periplasmic protein complement(4910990..4912168) Rhodopseudomonas palustris TIE-1 6412243 YP_001993529.1 CDS Rpal_4560 NC_011004.1 4912509 4912805 D KEGG: bja:blr5954 hypothetical protein; hypothetical protein 4912509..4912805 Rhodopseudomonas palustris TIE-1 6412244 YP_001993530.1 CDS Rpal_4561 NC_011004.1 4912861 4913448 D KEGG: mrd:Mrad2831_0095 hypothetical protein; hypothetical protein 4912861..4913448 Rhodopseudomonas palustris TIE-1 6412245 YP_001993531.1 CDS purU NC_011004.1 4913456 4914319 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(4913456..4914319) Rhodopseudomonas palustris TIE-1 6412246 YP_001993532.1 CDS Rpal_4563 NC_011004.1 4914451 4915296 D PFAM: uroporphyrinogen III synthase HEM4; KEGG: bbt:BBta_5710 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 4914451..4915296 Rhodopseudomonas palustris TIE-1 6412247 YP_001993533.1 CDS Rpal_4564 NC_011004.1 4915543 4916775 D KEGG: rme:Rmet_1862 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4915543..4916775 Rhodopseudomonas palustris TIE-1 6412248 YP_001993534.1 CDS Rpal_4565 NC_011004.1 4916904 4917851 D PFAM: inner-membrane translocator; KEGG: rso:RSc1751 amino acid transmembrane transmembrane protein; inner-membrane translocator 4916904..4917851 Rhodopseudomonas palustris TIE-1 6412249 YP_001993535.1 CDS Rpal_4566 NC_011004.1 4917848 4919149 D PFAM: inner-membrane translocator; KEGG: reu:Reut_A1401 inner-membrane translocator; inner-membrane translocator 4917848..4919149 Rhodopseudomonas palustris TIE-1 6412250 YP_001993536.1 CDS Rpal_4567 NC_011004.1 4919146 4919895 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rso:RSc1753 probable amino-acid ATP-binding ABC transporter protein; ABC transporter 4919146..4919895 Rhodopseudomonas palustris TIE-1 6412251 YP_001993537.1 CDS Rpal_4568 NC_011004.1 4919895 4920593 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rso:RSc1754 probable amino-acid ATP-binding ABC transporter protein; ABC transporter 4919895..4920593 Rhodopseudomonas palustris TIE-1 6412252 YP_001993538.1 CDS Rpal_4569 NC_011004.1 4920759 4921337 D KEGG: bra:BRADO7117 hypothetical protein; hypothetical protein 4920759..4921337 Rhodopseudomonas palustris TIE-1 6412253 YP_001993539.1 CDS Rpal_4570 NC_011004.1 4921459 4923411 D KEGG: sco:SCO4023 integral membrane protein; hypothetical protein 4921459..4923411 Rhodopseudomonas palustris TIE-1 6412254 YP_001993540.1 CDS Rpal_4571 NC_011004.1 4923629 4924519 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:blr5962 ABC transporter ATP-binding protein; ABC transporter 4923629..4924519 Rhodopseudomonas palustris TIE-1 6412255 YP_001993541.1 CDS Rpal_4572 NC_011004.1 4924516 4926447 D PFAM: AMP-dependent synthetase and ligase; KEGG: bra:BRADO5264 long-chain-fatty-acid-CoA ligase; AMP-dependent synthetase and ligase 4924516..4926447 Rhodopseudomonas palustris TIE-1 6412256 YP_001993542.1 CDS Rpal_4573 NC_011004.1 4926548 4927453 D PFAM: inner-membrane translocator; KEGG: bja:blr5964 ABC transporter permease protein; inner-membrane translocator 4926548..4927453 Rhodopseudomonas palustris TIE-1 6412257 YP_001993543.1 CDS Rpal_4574 NC_011004.1 4927559 4928632 D PFAM: inner-membrane translocator; KEGG: bja:blr5965 ABC transporter permease protein; inner-membrane translocator 4927559..4928632 Rhodopseudomonas palustris TIE-1 6412258 YP_001993544.1 CDS Rpal_4575 NC_011004.1 4928690 4929970 D KEGG: bja:blr5966 ABC transporter substrate-binding protein; ABC transporter substrate-binding protein 4928690..4929970 Rhodopseudomonas palustris TIE-1 6412259 YP_001993545.1 CDS Rpal_4576 NC_011004.1 4930240 4931082 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO5268 high-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding protein); ABC transporter 4930240..4931082 Rhodopseudomonas palustris TIE-1 6412260 YP_001993546.1 CDS Rpal_4577 NC_011004.1 4932263 4933522 D PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN1503 glycosyltransferase (group 1); group 1 glycosyl transferase 4932263..4933522 Rhodopseudomonas palustris TIE-1 6412261 YP_001993547.1 CDS Rpal_4578 NC_011004.1 4933560 4934708 R PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: pmy:Pmen_1873 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(4933560..4934708) Rhodopseudomonas palustris TIE-1 6412262 YP_001993548.1 CDS Rpal_4579 NC_011004.1 4934873 4936003 D PFAM: glycosyl transferase group 1; KEGG: har:HEAR1144 phosphatidylinositol alpha-mannosyltransferase; group 1 glycosyl transferase 4934873..4936003 Rhodopseudomonas palustris TIE-1 6412263 YP_001993549.1 CDS Rpal_4580 NC_011004.1 4936168 4936527 D hypothetical protein 4936168..4936527 Rhodopseudomonas palustris TIE-1 6412264 YP_001993550.1 CDS Rpal_4581 NC_011004.1 4937204 4938454 D PFAM: glycosyl transferase group 1; KEGG: rru:Rru_A2739 hypothetical protein; group 1 glycosyl transferase 4937204..4938454 Rhodopseudomonas palustris TIE-1 6412265 YP_001993551.1 CDS Rpal_4582 NC_011004.1 4938494 4939867 D PFAM: glycosyl transferase group 1; KEGG: mex:Mext_3710 glycosyl transferase group 1; group 1 glycosyl transferase 4938494..4939867 Rhodopseudomonas palustris TIE-1 6412266 YP_001993552.1 CDS Rpal_4583 NC_011004.1 4939864 4941114 D PFAM: glycosyl transferase group 1; KEGG: rty:RT0326 probable glycosyltransferase; group 1 glycosyl transferase 4939864..4941114 Rhodopseudomonas palustris TIE-1 6412267 YP_001993553.1 CDS Rpal_4584 NC_011004.1 4941111 4942319 D KEGG: mex:Mext_3711 hypothetical protein; hypothetical protein 4941111..4942319 Rhodopseudomonas palustris TIE-1 6412268 YP_001993554.1 CDS Rpal_4585 NC_011004.1 4942410 4943267 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: rco:RC0456 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 4942410..4943267 Rhodopseudomonas palustris TIE-1 6412269 YP_001993555.1 CDS Rpal_4586 NC_011004.1 4943318 4944364 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; polysaccharide biosynthesis domain protein; KEGG: pfl:PFL_5106 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD 4943318..4944364 Rhodopseudomonas palustris TIE-1 6412270 YP_001993556.1 CDS Rpal_4587 NC_011004.1 4944435 4945724 D PFAM: glycosyl transferase group 1; KEGG: mex:Mext_3710 glycosyl transferase group 1; group 1 glycosyl transferase 4944435..4945724 Rhodopseudomonas palustris TIE-1 6412271 YP_001993557.1 CDS Rpal_4588 NC_011004.1 4945721 4947094 D PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bra:BRADO5242 hypothetical protein; SAM-dependent methyltransferase domain; type 12 methyltransferase 4945721..4947094 Rhodopseudomonas palustris TIE-1 6412272 YP_001993558.1 CDS Rpal_4589 NC_011004.1 4947141 4947983 D PFAM: ABC transporter; KEGG: xom:XOO_0717 ABC transporter system integral membrane protein; ABC transporter 4947141..4947983 Rhodopseudomonas palustris TIE-1 6412273 YP_001993559.1 CDS Rpal_4590 NC_011004.1 4947980 4949230 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rca:Rcas_3643 ABC transporter; ABC transporter 4947980..4949230 Rhodopseudomonas palustris TIE-1 6412274 YP_001993560.1 CDS Rpal_4591 NC_011004.1 4949330 4949806 D KEGG: nmu:Nmul_A2516 methyltransferase; methyltransferase 4949330..4949806 Rhodopseudomonas palustris TIE-1 6412275 YP_001993561.1 CDS Rpal_4592 NC_011004.1 4949859 4951796 D KEGG: azo:azo3271 probable asparagine synthetase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase 4949859..4951796 Rhodopseudomonas palustris TIE-1 6412276 YP_001993562.1 CDS Rpal_4593 NC_011004.1 4951807 4954905 D PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: rru:Rru_A2737 glycosyl transferase, family 2; family 2 glycosyl transferase 4951807..4954905 Rhodopseudomonas palustris TIE-1 6412277 YP_001993563.1 CDS Rpal_4594 NC_011004.1 4954968 4956158 D KEGG: dvl:Dvul_2945 hypothetical protein; hypothetical protein 4954968..4956158 Rhodopseudomonas palustris TIE-1 6412278 YP_001993564.1 CDS Rpal_4596 NC_011004.1 4957143 4957409 D PFAM: transposase IS3/IS911 family protein; KEGG: oan:Oant_4528 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 4957143..4957409 Rhodopseudomonas palustris TIE-1 6412280 YP_001993565.1 CDS Rpal_4597 NC_011004.1 4957403 4958326 D PFAM: Integrase catalytic region; KEGG: bja:blr2054 transposase; integrase catalytic subunit 4957403..4958326 Rhodopseudomonas palustris TIE-1 6412281 YP_001993566.1 CDS Rpal_4599 NC_011004.1 4959221 4960258 R PFAM: acyltransferase 3; KEGG: rde:RD1_3390 acyltransferase; acyltransferase 3 complement(4959221..4960258) Rhodopseudomonas palustris TIE-1 6412283 YP_001993567.1 CDS Rpal_4601 NC_011004.1 4961650 4961994 D hypothetical protein 4961650..4961994 Rhodopseudomonas palustris TIE-1 6412285 YP_001993568.1 CDS Rpal_4602 NC_011004.1 4962028 4962273 R KEGG: bbt:BBta_1854 hypothetical protein; hypothetical protein complement(4962028..4962273) Rhodopseudomonas palustris TIE-1 6412286 YP_001993569.1 CDS Rpal_4603 NC_011004.1 4962507 4962923 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(4962507..4962923) Rhodopseudomonas palustris TIE-1 6412287 YP_001993570.1 CDS Rpal_4604 NC_011004.1 4962954 4963664 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(4962954..4963664) Rhodopseudomonas palustris TIE-1 6412288 YP_001993571.1 CDS carB NC_011004.1 4964224 4967553 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 4964224..4967553 Rhodopseudomonas palustris TIE-1 6412290 YP_001993572.1 CDS greA NC_011004.1 4967777 4968253 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 4967777..4968253 Rhodopseudomonas palustris TIE-1 6412291 YP_001993573.1 CDS Rpal_4607 NC_011004.1 4968432 4968842 D PFAM: DoxX family protein; KEGG: bbt:BBta_6801 hypothetical protein; DoxX family protein 4968432..4968842 Rhodopseudomonas palustris TIE-1 6412292 YP_001993574.1 CDS Rpal_4608 NC_011004.1 4968879 4969361 R PFAM: regulatory protein AsnC/Lrp family; KEGG: nwi:Nwi_2452 transcriptional regulatory proteins, AsnC/Lrp family; AsnC family transcriptional regulator complement(4968879..4969361) Rhodopseudomonas palustris TIE-1 6412293 YP_001993575.1 CDS Rpal_4609 NC_011004.1 4969618 4970583 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nwi:Nwi_2453 thioredoxin reductase; thioredoxin reductase 4969618..4970583 Rhodopseudomonas palustris TIE-1 6412294 YP_001993576.1 CDS Rpal_4610 NC_011004.1 4970592 4971515 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bra:BRADO1320 transcriptional regulatory protein, LysR family; LysR family transcriptional regulator 4970592..4971515 Rhodopseudomonas palustris TIE-1 6412295 YP_001993577.1 CDS Rpal_4611 NC_011004.1 4971832 4972506 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: nwi:Nwi_2455 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase complement(4971832..4972506) Rhodopseudomonas palustris TIE-1 6412296 YP_001993578.1 CDS Rpal_4612 NC_011004.1 4972718 4973095 R KEGG: nwi:Nwi_2456 hypothetical protein; hypothetical protein complement(4972718..4973095) Rhodopseudomonas palustris TIE-1 6412297 YP_001993579.1 CDS Rpal_4613 NC_011004.1 4973189 4973524 R KEGG: bja:bll7386 hypothetical protein; hypothetical protein complement(4973189..4973524) Rhodopseudomonas palustris TIE-1 6412298 YP_001993580.1 CDS Rpal_4614 NC_011004.1 4973665 4973895 R hypothetical protein complement(4973665..4973895) Rhodopseudomonas palustris TIE-1 6412299 YP_001993581.1 CDS Rpal_4615 NC_011004.1 4974114 4974926 R TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: nha:Nham_0392 Flp pilus assembly CpaB; Flp pilus assembly protein CpaB complement(4974114..4974926) Rhodopseudomonas palustris TIE-1 6412300 YP_001993582.1 CDS Rpal_4616 NC_011004.1 4975413 4975844 R TIGRFAM: phasin family protein; phasin; PFAM: Phasin 2 family protein; KEGG: bja:bll7395 hypothetical protein; phasin complement(4975413..4975844) Rhodopseudomonas palustris TIE-1 6412302 YP_001993583.1 CDS Rpal_4617 NC_011004.1 4976068 4976451 R TIGRFAM: phasin; KEGG: nha:Nham_1250 phasin 2; phasin complement(4976068..4976451) Rhodopseudomonas palustris TIE-1 6412303 YP_001993584.1 CDS Rpal_4618 NC_011004.1 4976775 4980350 D KEGG: bja:blr7396 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 4976775..4980350 Rhodopseudomonas palustris TIE-1 6412304 YP_001993585.1 CDS Rpal_4619 NC_011004.1 4980898 4981149 D PFAM: Rv0623 family protein transcription factor; KEGG: gvi:gsr3224 hypothetical protein; protein transcription factor 4980898..4981149 Rhodopseudomonas palustris TIE-1 6412305 YP_001993586.1 CDS Rpal_4620 NC_011004.1 4981146 4981550 D PFAM: PilT protein domain protein; KEGG: rle:pRL100005 conserved hypothetical PIN domain protein; PilT protein domain-containing protein 4981146..4981550 Rhodopseudomonas palustris TIE-1 6412306 YP_001993587.1 CDS Rpal_4621 NC_011004.1 4981634 4982344 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bja:blr7084 transcriptional regulatory protein; Crp/Fnr family transcriptional regulator 4981634..4982344 Rhodopseudomonas palustris TIE-1 6412307 YP_001993588.1 CDS Rpal_4622 NC_011004.1 4982317 4982541 R KEGG: bja:bsl7085 hypothetical protein; hypothetical protein complement(4982317..4982541) Rhodopseudomonas palustris TIE-1 6412308 YP_001993589.1 CDS Rpal_4623 NC_011004.1 4982779 4983891 D KEGG: bbt:BBta_6826 copper-containing nitrite reductase (NO-forming) NirK; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; nitrite reductase 4982779..4983891 Rhodopseudomonas palustris TIE-1 6412309 YP_001993590.1 CDS Rpal_4624 NC_011004.1 4984067 4984948 D PFAM: protein of unknown function DUF323; KEGG: bra:BRADO1226 nitrate reductase, NirV-like; signal peptide; hypothetical protein 4984067..4984948 Rhodopseudomonas palustris TIE-1 6412310 YP_001993591.1 CDS Rpal_4625 NC_011004.1 4985098 4986642 D catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine; thymidine phosphorylase 4985098..4986642 Rhodopseudomonas palustris TIE-1 6412311 YP_001993592.1 CDS Rpal_4626 NC_011004.1 4986639 4987550 D Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 4986639..4987550 Rhodopseudomonas palustris TIE-1 6412312 YP_001993593.1 CDS Rpal_4627 NC_011004.1 4987547 4989175 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bra:BRADO2723 conserved hypothetical protein; metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 4987547..4989175 Rhodopseudomonas palustris TIE-1 6412313 YP_001993594.1 CDS Rpal_4628 NC_011004.1 4989314 4989565 D hypothetical protein 4989314..4989565 Rhodopseudomonas palustris TIE-1 6412314 YP_001993595.1 CDS Rpal_4629 NC_011004.1 4989589 4989987 R PFAM: 4-oxalocrotonate tautomerase; KEGG: bxe:Bxe_C0717 hypothetical protein; 4-oxalocrotonate tautomerase complement(4989589..4989987) Rhodopseudomonas palustris TIE-1 6412315 YP_001993596.1 CDS Rpal_4630 NC_011004.1 4990090 4990962 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_C0718 transcriptional regulator, LysR family; LysR family transcriptional regulator 4990090..4990962 Rhodopseudomonas palustris TIE-1 6412316 YP_001993597.1 CDS Rpal_4631 NC_011004.1 4991082 4992092 D PFAM: extracellular solute-binding protein family 1; KEGG: mes:Meso_0170 extracellular solute-binding protein, family 1; family 1 extracellular solute-binding protein 4991082..4992092 Rhodopseudomonas palustris TIE-1 6412317 YP_001993598.1 CDS Rpal_4632 NC_011004.1 4992236 4993882 D PFAM: ABC transporter inner membrane protein; KEGG: pde:Pden_4446 ABC transporter inner membrane protein; ABC transporter inner membrane protein 4992236..4993882 Rhodopseudomonas palustris TIE-1 6412318 YP_001993599.1 CDS Rpal_4633 NC_011004.1 4993999 4994637 D KEGG: nha:Nham_1248 hypothetical protein; hypothetical protein 4993999..4994637 Rhodopseudomonas palustris TIE-1 6412319 YP_001993600.1 CDS Rpal_4634 NC_011004.1 4994804 4995454 R KEGG: bra:BRADO1224 acetyl-CoA:acetoacetyl-CoA transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(4994804..4995454) Rhodopseudomonas palustris TIE-1 6412320 YP_001993601.1 CDS Rpal_4635 NC_011004.1 4995466 4996182 R KEGG: bbt:BBta_6830 acetyl-CoA/acetoacetyl-CoA transferase, alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(4995466..4996182) Rhodopseudomonas palustris TIE-1 6412321 YP_001993602.1 CDS Rpal_4636 NC_011004.1 4996390 4998336 D PFAM: AsmA family protein; KEGG: nha:Nham_1245 AsmA; AsmA family protein 4996390..4998336 Rhodopseudomonas palustris TIE-1 6412322 YP_001993603.1 CDS Rpal_4637 NC_011004.1 4998494 4999294 R PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_6836 putrescine transport protein (ABC superfamily, membrane); ornithine carbamoyltransferase complement(4998494..4999294) Rhodopseudomonas palustris TIE-1 6412323 YP_001993604.1 CDS Rpal_4638 NC_011004.1 4999602 5000516 R PFAM: ABC transporter inner membrane protein; KEGG: bja:bll7104 ABC transporter permease protein; ABC transporter inner membrane protein complement(4999602..5000516) Rhodopseudomonas palustris TIE-1 6412324 YP_001993605.1 CDS Rpal_4639 NC_011004.1 5000513 5001655 R KEGG: bbt:BBta_6838 putrescine transport protein (ABC superfamily, atp_bind); TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; Transport-associated OB domain protein; SMART: ATPase AAA; spermidine/putrescine ABC transporter ATPase complement(5000513..5001655) Rhodopseudomonas palustris TIE-1 6412325 YP_001993606.1 CDS Rpal_4640 NC_011004.1 5001756 5002562 R PFAM: transcriptional regulator TrmB; KEGG: xau:Xaut_1568 transcriptional regulator, TrmB; TrmB family transcriptional regulator complement(5001756..5002562) Rhodopseudomonas palustris TIE-1 6412326 YP_001993607.1 CDS Rpal_4641 NC_011004.1 5002793 5003626 D PFAM: ABC transporter inner membrane protein; KEGG: mka:MK0602 homolog of ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, permease component; nitrate/sulfonate/taurine/bicarbonate ABC transporter permease 5002793..5003626 Rhodopseudomonas palustris TIE-1 6412327 YP_001993608.1 CDS Rpal_4642 NC_011004.1 5003638 5004492 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ckl:CKL_1039 predicted ABC transporter ATP-binding protein; ABC transporter 5003638..5004492 Rhodopseudomonas palustris TIE-1 6412328 YP_001993609.1 CDS Rpal_4643 NC_011004.1 5004496 5005551 D KEGG: mex:Mext_3405 aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein 5004496..5005551 Rhodopseudomonas palustris TIE-1 6412329 YP_001993610.1 CDS Rpal_4644 NC_011004.1 5005608 5006303 D KEGG: mms:mma_2479 hypothetical protein; hypothetical protein 5005608..5006303 Rhodopseudomonas palustris TIE-1 6412330 YP_001993611.1 CDS Rpal_4645 NC_011004.1 5006315 5007268 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sfu:Sfum_2312 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 5006315..5007268 Rhodopseudomonas palustris TIE-1 6412331 YP_001993612.1 CDS Rpal_4646 NC_011004.1 5007311 5009941 R KEGG: bra:BRADO1213 diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains precursor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(5007311..5009941) Rhodopseudomonas palustris TIE-1 6412332 YP_001993613.1 CDS Rpal_4647 NC_011004.1 5010160 5011260 D PFAM: FAD dependent oxidoreductase; KEGG: bra:BRADO1212 NAD binding site:FAD dependent oxidoreductase; FAD dependent oxidoreductase 5010160..5011260 Rhodopseudomonas palustris TIE-1 6412333 YP_001993614.1 CDS Rpal_4648 NC_011004.1 5011351 5011659 D PFAM: regulatory protein GntR HTH; KEGG: rsh:Rsph17029_3903 transcriptional regulator, GntR family; GntR family transcriptional regulator 5011351..5011659 Rhodopseudomonas palustris TIE-1 6412334 YP_001993615.1 CDS Rpal_4649 NC_011004.1 5011659 5012081 D PFAM: GntR domain protein; KEGG: azo:azo2437 transcriptional regulator; GntR family transcriptional regulator 5011659..5012081 Rhodopseudomonas palustris TIE-1 6412335 YP_001993616.1 CDS Rpal_4650 NC_011004.1 5012356 5013558 D KEGG: bra:BRADO6234 ABC transporter (substrate-binding protein); branched-chain amino acid transporter; branched-chain amino acid ABC transporter substrate-binding protein 5012356..5013558 Rhodopseudomonas palustris TIE-1 6412336 YP_001993617.1 CDS Rpal_4651 NC_011004.1 5013986 5014168 R KEGG: bja:bsl7109 hypothetical protein; hypothetical protein complement(5013986..5014168) Rhodopseudomonas palustris TIE-1 6412337 YP_001993618.1 CDS Rpal_4652 NC_011004.1 5014527 5014733 D PFAM: protein of unknown function DUF465; KEGG: nha:Nham_1238 protein of unknown function DUF465; hypothetical protein 5014527..5014733 Rhodopseudomonas palustris TIE-1 6412338 YP_001993619.1 CDS Rpal_4653 NC_011004.1 5014723 5015451 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: nha:Nham_1237 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(5014723..5015451) Rhodopseudomonas palustris TIE-1 6412339 YP_001993620.1 CDS Rpal_4654 NC_011004.1 5015604 5016092 D KEGG: bbt:BBta_6848 phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 5015604..5016092 Rhodopseudomonas palustris TIE-1 6412340 YP_001993621.1 CDS Rpal_4655 NC_011004.1 5016089 5017189 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 5016089..5017189 Rhodopseudomonas palustris TIE-1 6412341 YP_001993622.1 CDS rpsU NC_011004.1 5017346 5017609 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 5017346..5017609 Rhodopseudomonas palustris TIE-1 6412342 YP_001993623.1 CDS Rpal_4657 NC_011004.1 5017786 5018661 R KEGG: bja:bll7119 hypothetical protein; hypothetical protein complement(5017786..5018661) Rhodopseudomonas palustris TIE-1 6412343 YP_001993624.1 CDS Rpal_4658 NC_011004.1 5018811 5019098 R KEGG: bja:bsl7120 hypothetical protein; hypothetical protein complement(5018811..5019098) Rhodopseudomonas palustris TIE-1 6412344 YP_001993625.1 CDS Rpal_4659 NC_011004.1 5019302 5019676 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bbt:BBta_3517 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 5019302..5019676 Rhodopseudomonas palustris TIE-1 6412345 YP_001993626.1 CDS Rpal_4660 NC_011004.1 5019855 5021258 R PFAM: NAD(P) transhydrogenase beta subunit; KEGG: bja:bll7124 NAD(P)+ transhydrogenase beta chain; NAD(P)(+) transhydrogenase complement(5019855..5021258) Rhodopseudomonas palustris TIE-1 6412346 YP_001993627.1 CDS Rpal_4661 NC_011004.1 5021272 5021595 R KEGG: nwi:Nwi_0996 NAD(P) transhydrogenase subunit alpha part; NAD(P) transhydrogenase subunit alpha complement(5021272..5021595) Rhodopseudomonas palustris TIE-1 6412347 YP_001993628.1 CDS Rpal_4662 NC_011004.1 5021621 5022748 R PFAM: alanine dehydrogenase/PNT domain protein; KEGG: bja:bll7126 NAD(P)+ transhydrogenase; NAD(P)(+) transhydrogenase complement(5021621..5022748) Rhodopseudomonas palustris TIE-1 6412348 YP_001993629.1 CDS Rpal_4663 NC_011004.1 5022944 5023096 R PFAM: aa3 type cytochrome C oxidase subunit IV; KEGG: bja:bsl7127 hypothetical protein; aa3 type cytochrome C oxidase subunit IV complement(5022944..5023096) Rhodopseudomonas palustris TIE-1 6412349 YP_001993630.1 CDS Rpal_4664 NC_011004.1 5023383 5023523 R KEGG: bbt:BBta_6860 death on curing protein; death on curing protein complement(5023383..5023523) Rhodopseudomonas palustris TIE-1 6412350 YP_001993631.1 CDS Rpal_4665 NC_011004.1 5023582 5025498 R TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: bbt:BBta_6862 oligoendopeptidase F; oligoendopeptidase complement(5023582..5025498) Rhodopseudomonas palustris TIE-1 6412351 YP_001993632.1 CDS Rpal_4666 NC_011004.1 5025864 5026499 D PFAM: Integral membrane protein TerC; KEGG: mes:Meso_0688 integral membrane protein TerC; integral membrane protein TerC 5025864..5026499 Rhodopseudomonas palustris TIE-1 6412352 YP_001993633.1 CDS Rpal_4667 NC_011004.1 5026595 5028082 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; SMART: ATPase AAA; KEGG: bja:blr7130 two-component response regulator; Fis family transcriptional regulator 5026595..5028082 Rhodopseudomonas palustris TIE-1 6412353 YP_001993634.1 CDS Rpal_4668 NC_011004.1 5028430 5030604 D PFAM: peptidoglycan-binding domain 1 protein; KEGG: bja:blr7131 hypothetical protein; peptidoglycan-binding domain 1 protein 5028430..5030604 Rhodopseudomonas palustris TIE-1 6412354 YP_001993635.1 CDS Rpal_4669 NC_011004.1 5030926 5032548 D PFAM: protein of unknown function DUF882; peptidase M15A; KEGG: nha:Nham_1222 protein of unknown function DUF882; hypothetical protein 5030926..5032548 Rhodopseudomonas palustris TIE-1 6412355 YP_001993636.1 CDS Rpal_4670 NC_011004.1 5032674 5032946 R KEGG: nha:Nham_1221 hypothetical protein; hypothetical protein complement(5032674..5032946) Rhodopseudomonas palustris TIE-1 6412356 YP_001993637.1 CDS Rpal_4671 NC_011004.1 5033134 5033433 R PFAM: protein of unknown function DUF1244; KEGG: bja:bll7136 hypothetical protein; hypothetical protein complement(5033134..5033433) Rhodopseudomonas palustris TIE-1 6412357 YP_001993638.1 CDS Rpal_4672 NC_011004.1 5033626 5034210 D PFAM: protein of unknown function DUF1036; KEGG: bja:blr7137 hypothetical protein; hypothetical protein 5033626..5034210 Rhodopseudomonas palustris TIE-1 6412358 YP_001993639.1 CDS Rpal_4673 NC_011004.1 5034207 5035640 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 5034207..5035640 Rhodopseudomonas palustris TIE-1 6412359 YP_001993640.1 CDS Rpal_4674 NC_011004.1 5035867 5036295 R PFAM: OsmC family protein; KEGG: azc:AZC_1807 OsmC-like protein; OsmC family protein complement(5035867..5036295) Rhodopseudomonas palustris TIE-1 6412360 YP_001993641.1 CDS Rpal_4675 NC_011004.1 5036292 5037296 R PFAM: alpha/beta hydrolase fold; KEGG: bja:bll7545 esterase; alpha/beta hydrolase fold protein complement(5036292..5037296) Rhodopseudomonas palustris TIE-1 6412361 YP_001993642.1 CDS Rpal_4676 NC_011004.1 5037367 5038029 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bra:BRADO6136 conserved hypothetical protein; TPR repeat precursor; hypothetical protein complement(5037367..5038029) Rhodopseudomonas palustris TIE-1 6412362 YP_001993643.1 CDS rpmJ NC_011004.1 5038127 5038252 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(5038127..5038252) Rhodopseudomonas palustris TIE-1 6412363 YP_001993644.1 CDS Rpal_4678 NC_011004.1 5038563 5039432 D PFAM: amidohydrolase 2; KEGG: bra:BRADO6138 amidohydrolase; amidohydrolase 2 5038563..5039432 Rhodopseudomonas palustris TIE-1 6412364 YP_001993645.1 CDS Rpal_4679 NC_011004.1 5039698 5040438 D KEGG: bbt:BBta_1654 2-haloacid dehalogenase; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase 5039698..5040438 Rhodopseudomonas palustris TIE-1 6412365 YP_001993646.1 CDS Rpal_4680 NC_011004.1 5040515 5040997 D PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bja:blr7561 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 5040515..5040997 Rhodopseudomonas palustris TIE-1 6412366 YP_001993647.1 CDS Rpal_4681 NC_011004.1 5041071 5041361 R KEGG: bja:bsl2782 hypothetical protein; hypothetical protein complement(5041071..5041361) Rhodopseudomonas palustris TIE-1 6412367 YP_001993648.1 CDS Rpal_4682 NC_011004.1 5041535 5042860 R PFAM: chemotaxis sensory transducer; KEGG: mag:amb0994 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(5041535..5042860) Rhodopseudomonas palustris TIE-1 6412368 YP_001993649.1 CDS Rpal_4683 NC_011004.1 5042835 5043356 R KEGG: bja:blr2975 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor protein complement(5042835..5043356) Rhodopseudomonas palustris TIE-1 6412369 YP_001993650.1 CDS Rpal_4684 NC_011004.1 5043586 5043810 R hypothetical protein complement(5043586..5043810) Rhodopseudomonas palustris TIE-1 6412370 YP_001993651.1 CDS Rpal_4685 NC_011004.1 5044067 5045428 D PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: nha:Nham_3553 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 5044067..5045428 Rhodopseudomonas palustris TIE-1 6412371 YP_001993652.1 CDS Rpal_4686 NC_011004.1 5045484 5045717 D KEGG: bra:BRADO3468 hypothetical protein; hypothetical protein 5045484..5045717 Rhodopseudomonas palustris TIE-1 6412372 YP_001993653.1 CDS Rpal_4687 NC_011004.1 5045873 5046661 R TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nha:Nham_3554 3-hydroxybutyrate dehydrogenase; 3-hydroxybutyrate dehydrogenase complement(5045873..5046661) Rhodopseudomonas palustris TIE-1 6412373 YP_001993654.1 CDS Rpal_4688 NC_011004.1 5046710 5047849 R PFAM: Patatin; KEGG: nha:Nham_3555 patatin; patatin complement(5046710..5047849) Rhodopseudomonas palustris TIE-1 6412374 YP_001993655.1 CDS Rpal_4689 NC_011004.1 5047944 5048459 R PFAM: SCP-like extracellular; KEGG: bja:blr1486 hypothetical protein; hypothetical protein complement(5047944..5048459) Rhodopseudomonas palustris TIE-1 6412375 YP_001993656.1 CDS Rpal_4690 NC_011004.1 5048703 5049740 R PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: bbt:BBta_4311 glutamine synthetase II; glutamate--ammonia ligase complement(5048703..5049740) Rhodopseudomonas palustris TIE-1 6412376 YP_001993657.1 CDS Rpal_4691 NC_011004.1 5050235 5050417 D hypothetical protein 5050235..5050417 Rhodopseudomonas palustris TIE-1 6412377 YP_001993658.1 CDS Rpal_4692 NC_011004.1 5050519 5051454 R catalyzes the formation of glutamate from glutamine; glutaminase complement(5050519..5051454) Rhodopseudomonas palustris TIE-1 6412378 YP_001993659.1 CDS Rpal_4693 NC_011004.1 5051600 5052109 R PFAM: conserved hypothetical protein; KEGG: bra:BRADO1068 hypothetical protein; hypothetical protein complement(5051600..5052109) Rhodopseudomonas palustris TIE-1 6412379 YP_001993660.1 CDS Rpal_4694 NC_011004.1 5052096 5053751 R PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bja:blr1479 ferredoxin-nitrite reductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain-containing protein complement(5052096..5053751) Rhodopseudomonas palustris TIE-1 6412380 YP_001993661.1 CDS Rpal_4695 NC_011004.1 5053762 5054076 R KEGG: bra:BRADO1066 hypothetical protein; hypothetical protein complement(5053762..5054076) Rhodopseudomonas palustris TIE-1 6412381 YP_001993662.1 CDS Rpal_4696 NC_011004.1 5054073 5055509 R TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bbt:BBta_6982 siroheme synthase; uroporphyrin-III C-methyltransferase complement(5054073..5055509) Rhodopseudomonas palustris TIE-1 6412382 YP_001993663.1 CDS Rpal_4697 NC_011004.1 5055908 5058082 D catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 5055908..5058082 Rhodopseudomonas palustris TIE-1 6412383 YP_001993664.1 CDS Rpal_4698 NC_011004.1 5058273 5058473 D PFAM: CsbD family protein; KEGG: ret:RHE_CH01802 hypothetical protein; CsbD family protein 5058273..5058473 Rhodopseudomonas palustris TIE-1 6412384 YP_001993665.1 CDS Rpal_4699 NC_011004.1 5058612 5058773 R KEGG: bja:bsr1472 hypothetical protein; hypothetical protein complement(5058612..5058773) Rhodopseudomonas palustris TIE-1 6412385 YP_001993666.1 CDS Rpal_4700 NC_011004.1 5058930 5059589 R KEGG: bja:blr1469 hypothetical protein; hypothetical protein complement(5058930..5059589) Rhodopseudomonas palustris TIE-1 6412386 YP_001993667.1 CDS Rpal_4701 NC_011004.1 5059615 5060382 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr1468 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein complement(5059615..5060382) Rhodopseudomonas palustris TIE-1 6412387 YP_001993668.1 CDS Rpal_4702 NC_011004.1 5060604 5061719 D PFAM: protein of unknown function UPF0118; KEGG: bja:bll1467 hypothetical protein; hypothetical protein 5060604..5061719 Rhodopseudomonas palustris TIE-1 6412388 YP_001993669.1 CDS Rpal_4703 NC_011004.1 5061835 5062230 R KEGG: bja:bll7790 hypothetical protein; hypothetical protein complement(5061835..5062230) Rhodopseudomonas palustris TIE-1 6412389 YP_001993670.1 CDS Rpal_4704 NC_011004.1 5062605 5063411 R in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator complement(5062605..5063411) Rhodopseudomonas palustris TIE-1 6412390 YP_001993671.1 CDS Rpal_4705 NC_011004.1 5063614 5063826 D KEGG: bra:BRADO1048 hypothetical protein; hypothetical protein 5063614..5063826 Rhodopseudomonas palustris TIE-1 6412391 YP_001993672.1 CDS Rpal_4706 NC_011004.1 5063826 5064371 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 5063826..5064371 Rhodopseudomonas palustris TIE-1 6412392 YP_001993673.1 CDS Rpal_4707 NC_011004.1 5064529 5066199 R PFAM: HWE histidine kinase; KEGG: bbt:BBta_7004 signal transduction histidine kinase with CHASE domain; signal transduction histidine kinase complement(5064529..5066199) Rhodopseudomonas palustris TIE-1 6412393 YP_001993674.1 CDS Rpal_4708 NC_011004.1 5066447 5067076 R TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: bra:BRADO1045 urease accessory protein UreG; urease accessory protein UreG complement(5066447..5067076) Rhodopseudomonas palustris TIE-1 6412394 YP_001993675.1 CDS Rpal_4709 NC_011004.1 5068481 5068765 D KEGG: nha:Nham_1001 hypothetical protein; hypothetical protein 5068481..5068765 Rhodopseudomonas palustris TIE-1 6412395 YP_001993676.1 CDS Rpal_4710 NC_011004.1 5068834 5070945 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: bbt:BBta_5740 dimethyl sulfoxide reductase(DMSO reductase); molybdopterin oxidoreductase complement(5068834..5070945) Rhodopseudomonas palustris TIE-1 6412396 YP_001993677.1 CDS Rpal_4711 NC_011004.1 5071080 5071406 D KEGG: bja:blr7579 hypothetical protein; hypothetical protein 5071080..5071406 Rhodopseudomonas palustris TIE-1 6412397 YP_001993678.1 CDS Rpal_4712 NC_011004.1 5071420 5072658 R PFAM: cyclic nucleotide-binding; ion transport protein; ion transport 2 domain protein; KEGG: azc:AZC_1864 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(5071420..5072658) Rhodopseudomonas palustris TIE-1 6412398 YP_001993679.1 CDS Rpal_4713 NC_011004.1 5072711 5073430 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bja:bll6061 transcriptional regulatory protein; Crp/Fnr family transcriptional regulator complement(5072711..5073430) Rhodopseudomonas palustris TIE-1 6412399 YP_001993680.1 CDS Rpal_4714 NC_011004.1 5073625 5073942 D KEGG: bra:BRADO5301 conserved hypothetical protein; cytochrome C; hypothetical protein 5073625..5073942 Rhodopseudomonas palustris TIE-1 6412400 YP_001993681.1 CDS Rpal_4715 NC_011004.1 5073902 5075098 R PFAM: mammalian cell entry related domain protein; KEGG: nha:Nham_1923 mammalian cell entry related; mammalian cell entry related domain-containing protein complement(5073902..5075098) Rhodopseudomonas palustris TIE-1 6412401 YP_001993682.1 CDS Rpal_4716 NC_011004.1 5075110 5075889 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nha:Nham_1922 ABC transporter; ABC transporter complement(5075110..5075889) Rhodopseudomonas palustris TIE-1 6412402 YP_001993683.1 CDS Rpal_4717 NC_011004.1 5075892 5077040 R PFAM: protein of unknown function DUF140; KEGG: nha:Nham_1921 protein of unknown function DUF140; hypothetical protein complement(5075892..5077040) Rhodopseudomonas palustris TIE-1 6412403 YP_001993684.1 CDS Rpal_4718 NC_011004.1 5077191 5077601 D KEGG: nha:Nham_1920 hypothetical protein; hypothetical protein 5077191..5077601 Rhodopseudomonas palustris TIE-1 6412404 YP_001993685.1 CDS Rpal_4719 NC_011004.1 5077630 5080353 R PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: bja:bll6068 hypothetical protein; N-acetyltransferase GCN5 complement(5077630..5080353) Rhodopseudomonas palustris TIE-1 6412405 YP_001993686.1 CDS Rpal_4720 NC_011004.1 5080493 5080885 R PFAM: CBS domain containing protein; KEGG: bra:BRADO2437 conserved hypothetical protein with CBS domain; hypothetical protein complement(5080493..5080885) Rhodopseudomonas palustris TIE-1 6412406 YP_001993687.1 CDS Rpal_4721 NC_011004.1 5081176 5082735 D KEGG: nha:Nham_1915 hypothetical protein; hypothetical protein 5081176..5082735 Rhodopseudomonas palustris TIE-1 6412407 YP_001993688.1 CDS Rpal_4722 NC_011004.1 5082717 5084480 R PFAM: alpha/beta hydrolase fold; poly-beta-hydroxybutyrate polymerase domain protein; KEGG: bja:bll6073 probable poly-beta-hydroxybutyrate polymerase; poly-beta-hydroxybutyrate polymerase domain-containing protein complement(5082717..5084480) Rhodopseudomonas palustris TIE-1 6412408 YP_001993689.1 CDS Rpal_4723 NC_011004.1 5084750 5085586 R PFAM: UspA domain protein; KEGG: nha:Nham_1913 UspA; UspA domain-containing protein complement(5084750..5085586) Rhodopseudomonas palustris TIE-1 6412409 YP_001993690.1 CDS Rpal_4724 NC_011004.1 5085776 5086609 D PFAM: UspA domain protein; KEGG: bja:bll2590 hypothetical protein; UspA domain-containing protein 5085776..5086609 Rhodopseudomonas palustris TIE-1 6412410 YP_001993691.1 CDS Rpal_4725 NC_011004.1 5086696 5087427 D PFAM: CBS domain containing protein; transport-associated; KEGG: bra:BRADO5312 conserved hypothetical protein with CBS domain; signal transduction protein with CBS domains 5086696..5087427 Rhodopseudomonas palustris TIE-1 6412411 YP_001993692.1 CDS Rpal_4726 NC_011004.1 5087572 5089098 D KEGG: bja:bll2760 two-component oxygen-sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 5087572..5089098 Rhodopseudomonas palustris TIE-1 6412412 YP_001993693.1 CDS fixJ NC_011004.1 5089091 5089702 D response regulator for histidine kinase FixL; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes; response regulator FixJ 5089091..5089702 Rhodopseudomonas palustris TIE-1 6412413 YP_001993694.1 CDS Rpal_4728 NC_011004.1 5089788 5090180 D PFAM: response regulator receiver; KEGG: bja:bll2758 two-component response regulator; response regulator receiver protein 5089788..5090180 Rhodopseudomonas palustris TIE-1 6412414 YP_001993695.1 CDS fixK NC_011004.1 5090379 5091071 D transcriptional regulator that positively regulated fixLJ operon; upregulated transcription by FixJ; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes; FixK family transcriptional regulator 5090379..5091071 Rhodopseudomonas palustris TIE-1 6412415 YP_001993696.1 CDS Rpal_4730 NC_011004.1 5091401 5092708 D KEGG: rsq:Rsph17025_0776 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 5091401..5092708 Rhodopseudomonas palustris TIE-1 6412416 YP_001993697.1 CDS Rpal_4731 NC_011004.1 5092862 5094226 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rsh:Rsph17029_1748 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) complement(5092862..5094226) Rhodopseudomonas palustris TIE-1 6412417 YP_001993698.1 CDS Rpal_4732 NC_011004.1 5094237 5095679 R KEGG: rsq:Rsph17025_1700 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M complement(5094237..5095679) Rhodopseudomonas palustris TIE-1 6412418 YP_001993699.1 CDS Rpal_4733 NC_011004.1 5095670 5097739 R KEGG: rsq:Rsph17025_1699 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L complement(5095670..5097739) Rhodopseudomonas palustris TIE-1 6412419 YP_001993700.1 CDS Rpal_4734 NC_011004.1 5097742 5098050 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: rsh:Rsph17029_1745 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase chain 4L complement(5097742..5098050) Rhodopseudomonas palustris TIE-1 6412420 YP_001993701.1 CDS Rpal_4735 NC_011004.1 5098047 5098553 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: rsh:Rsph17029_1744 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 complement(5098047..5098553) Rhodopseudomonas palustris TIE-1 6412421 YP_001993702.1 CDS Rpal_4736 NC_011004.1 5098550 5099071 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(5098550..5099071) Rhodopseudomonas palustris TIE-1 6412422 YP_001993703.1 CDS Rpal_4737 NC_011004.1 5099068 5100027 R PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: rsh:Rsph17029_1742 respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase (quinone) complement(5099068..5100027) Rhodopseudomonas palustris TIE-1 6412423 YP_001993704.1 CDS Rpal_4738 NC_011004.1 5100024 5102657 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(5100024..5102657) Rhodopseudomonas palustris TIE-1 6412424 YP_001993705.1 CDS Rpal_4739 NC_011004.1 5102654 5103940 R PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rsh:Rsph17029_1740 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) complement(5102654..5103940) Rhodopseudomonas palustris TIE-1 6412425 YP_001993706.1 CDS Rpal_4740 NC_011004.1 5103937 5104425 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(5103937..5104425) Rhodopseudomonas palustris TIE-1 6412426 YP_001993707.1 CDS Rpal_4741 NC_011004.1 5104422 5106167 R NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D complement(5104422..5106167) Rhodopseudomonas palustris TIE-1 6412427 YP_001993708.1 CDS Rpal_4742 NC_011004.1 5106164 5106790 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(5106164..5106790) Rhodopseudomonas palustris TIE-1 6412428 YP_001993709.1 CDS Rpal_4743 NC_011004.1 5106787 5107176 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: pap:PSPA7_2570 NADH dehydrogenase I chain A; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 complement(5106787..5107176) Rhodopseudomonas palustris TIE-1 6412429 YP_001993710.1 CDS Rpal_4744 NC_011004.1 5107621 5109420 D responsible for transport of beta-1,2-glucans from the cytoplasm to periplasm; inner membrane ABC transporter permease component; Cgt; ChvA; NdvA; cyclic beta-1,2-glucan ABc transporter 5107621..5109420 Rhodopseudomonas palustris TIE-1 6412430 YP_001993711.1 CDS Rpal_4745 NC_011004.1 5109590 5111041 D PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: bja:bll1320 probable penicillin-binding protein; serine-type D-Ala-D-Ala carboxypeptidase 5109590..5111041 Rhodopseudomonas palustris TIE-1 6412431 YP_001993712.1 CDS Rpal_4746 NC_011004.1 5111313 5113004 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 5111313..5113004 Rhodopseudomonas palustris TIE-1 6412432 YP_001993713.1 CDS Rpal_4747 NC_011004.1 5113249 5113734 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bja:bll1317 peroxiredoxin; redoxin domain-containing protein 5113249..5113734 Rhodopseudomonas palustris TIE-1 6412433 YP_001993714.1 CDS Rpal_4748 NC_011004.1 5113875 5115044 D PFAM: Integrase catalytic region; KEGG: sme:SMc04250 transposase protein; integrase catalytic subunit 5113875..5115044 Rhodopseudomonas palustris TIE-1 6412434 YP_001993715.1 CDS rnhA NC_011004.1 5115151 5115618 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(5115151..5115618) Rhodopseudomonas palustris TIE-1 6412435 YP_001993716.1 CDS Rpal_4750 NC_011004.1 5115615 5116598 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase complement(5115615..5116598) Rhodopseudomonas palustris TIE-1 6412436 YP_001993717.1 CDS ispH NC_011004.1 5116698 5117660 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(5116698..5117660) Rhodopseudomonas palustris TIE-1 6412437 YP_001993718.1 CDS Rpal_4752 NC_011004.1 5117920 5118636 D PFAM: protein of unknown function DUF1013; KEGG: nwi:Nwi_2690 protein of unknown function DUF1013; hypothetical protein 5117920..5118636 Rhodopseudomonas palustris TIE-1 6412438 YP_001993719.1 CDS Rpal_4753 NC_011004.1 5118816 5119193 R hypothetical protein complement(5118816..5119193) Rhodopseudomonas palustris TIE-1 6412439 YP_001993720.1 CDS Rpal_4754 NC_011004.1 5119688 5121070 R KEGG: ecs:ECs3238 hypothetical protein; hypothetical protein complement(5119688..5121070) Rhodopseudomonas palustris TIE-1 6412440 YP_001993721.1 CDS Rpal_4755 NC_011004.1 5122190 5122855 D KEGG: azc:AZC_4237 hypothetical protein; hypothetical protein 5122190..5122855 Rhodopseudomonas palustris TIE-1 6412441 YP_001993722.1 CDS Rpal_4756 NC_011004.1 5123207 5123836 D KEGG: cdf:CD3165 hypothetical protein; hypothetical protein 5123207..5123836 Rhodopseudomonas palustris TIE-1 6412442 YP_001993723.1 CDS Rpal_4757 NC_011004.1 5124042 5124467 D hypothetical protein 5124042..5124467 Rhodopseudomonas palustris TIE-1 6412443 YP_001993724.1 CDS Rpal_4758 NC_011004.1 5124761 5125225 D KEGG: pla:Plav_2328 hypothetical protein; hypothetical protein 5124761..5125225 Rhodopseudomonas palustris TIE-1 6412444 YP_001993725.1 CDS Rpal_4759 NC_011004.1 5125241 5126239 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bja:blr7666 transcriptional regulatory protein; AraC family transcriptional regulator complement(5125241..5126239) Rhodopseudomonas palustris TIE-1 6412445 YP_001993726.1 CDS Rpal_4760 NC_011004.1 5126757 5127929 D KEGG: bra:BRADO1888 hypothetical protein; hypothetical protein 5126757..5127929 Rhodopseudomonas palustris TIE-1 6412446 YP_001993727.1 CDS Rpal_4761 NC_011004.1 5128116 5128589 D PFAM: BLUF domain protein; KEGG: mex:Mext_4031 BLUF domain protein; BLUF domain-containing protein 5128116..5128589 Rhodopseudomonas palustris TIE-1 6412447 YP_001993728.1 CDS Rpal_4762 NC_011004.1 5128602 5129507 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_1677 LysR substrate-binding; LysR family transcriptional regulator complement(5128602..5129507) Rhodopseudomonas palustris TIE-1 6412448 YP_001993729.1 CDS Rpal_4763 NC_011004.1 5129600 5130241 D PFAM: YceI family protein; KEGG: mrd:Mrad2831_5253 YceI family protein; hypothetical protein 5129600..5130241 Rhodopseudomonas palustris TIE-1 6412449 YP_001993730.1 CDS Rpal_4764 NC_011004.1 5130317 5130907 D PFAM: nitroreductase; KEGG: cvi:CV_1813 hypothetical protein; hypothetical protein 5130317..5130907 Rhodopseudomonas palustris TIE-1 6412450 YP_001993731.1 CDS Rpal_4765 NC_011004.1 5130950 5131753 D PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: gbe:GbCGDNIH1_1055 dioxygenase; extradiol ring-cleavage dioxygenase class III protein subunit B 5130950..5131753 Rhodopseudomonas palustris TIE-1 6412451 YP_001993732.1 CDS Rpal_4766 NC_011004.1 5132128 5132760 R PFAM: methyltransferase type 11; KEGG: scl:sce7770 hypothetical protein; type 11 methyltransferase complement(5132128..5132760) Rhodopseudomonas palustris TIE-1 6412452 YP_001993733.1 CDS Rpal_4767 NC_011004.1 5132844 5133671 D KEGG: psb:Psyr_0778 type III effector HopAG1; type III effector HopAG1 5132844..5133671 Rhodopseudomonas palustris TIE-1 6412453 YP_001993734.1 CDS Rpal_4768 NC_011004.1 5133671 5134228 D KEGG: rsq:Rsph17025_3200 hypothetical protein; dual specificity protein phosphatase 5133671..5134228 Rhodopseudomonas palustris TIE-1 6412454 YP_001993735.1 CDS Rpal_4769 NC_011004.1 5134361 5134810 D PFAM: phosphate-starvation-inducible E; KEGG: rsq:Rsph17025_1887 phosphate-starvation-inducible E; phosphate-starvation-inducible E 5134361..5134810 Rhodopseudomonas palustris TIE-1 6412455 YP_001993736.1 CDS Rpal_4770 NC_011004.1 5135146 5135301 D PFAM: antenna complex alpha/beta subunit; KEGG: bbt:BBta_3081 light harvesting protein B-800-850; antenna complex alpha/beta subunit 5135146..5135301 Rhodopseudomonas palustris TIE-1 6412456 YP_001993737.1 CDS Rpal_4771 NC_011004.1 5135314 5135514 D PFAM: antenna complex alpha/beta subunit; KEGG: hha:Hhal_1408 antenna complex, alpha/beta subunit; antenna complex alpha/beta subunit 5135314..5135514 Rhodopseudomonas palustris TIE-1 6412457 YP_001993738.1 CDS Rpal_4772 NC_011004.1 5135983 5136201 D KEGG: nha:Nham_1125 hypothetical protein; hypothetical protein 5135983..5136201 Rhodopseudomonas palustris TIE-1 6412458 YP_001993739.1 CDS Rpal_4773 NC_011004.1 5136734 5138338 R KEGG: nha:Nham_1124 hypothetical protein; hypothetical protein complement(5136734..5138338) Rhodopseudomonas palustris TIE-1 6412459 YP_001993740.1 CDS Rpal_4774 NC_011004.1 5138376 5139668 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(5138376..5139668) Rhodopseudomonas palustris TIE-1 6412460 YP_001993741.1 CDS Rpal_4775 NC_011004.1 5139964 5140275 R PFAM: type IV pilus assembly PilZ; KEGG: nwi:Nwi_0398 hypothetical protein; type IV pilus assembly PilZ complement(5139964..5140275) Rhodopseudomonas palustris TIE-1 6412461 YP_001993742.1 CDS Rpal_4776 NC_011004.1 5140669 5141493 D PFAM: aldo/keto reductase; KEGG: bbt:BBta_2445 2,5-diketo-D-gluconate reductase B; aldo/keto reductase 5140669..5141493 Rhodopseudomonas palustris TIE-1 6412462 YP_001993743.1 CDS Rpal_4777 NC_011004.1 5141940 5142416 D TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: nha:Nham_1120 hypothetical protein; ybaK/ebsC protein 5141940..5142416 Rhodopseudomonas palustris TIE-1 6412463 YP_001993744.1 CDS Rpal_4778 NC_011004.1 5142575 5143504 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr7055 hypothetical transport protein; hypothetical protein 5142575..5143504 Rhodopseudomonas palustris TIE-1 6412464 YP_001993745.1 CDS Rpal_4779 NC_011004.1 5143517 5143930 R KEGG: bja:bll7059 hypothetical protein; hypothetical protein complement(5143517..5143930) Rhodopseudomonas palustris TIE-1 6412465 YP_001993746.1 CDS Rpal_4780 NC_011004.1 5144163 5145068 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bra:BRADO5941 transport protein; permease of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 5144163..5145068 Rhodopseudomonas palustris TIE-1 6412466 YP_001993747.1 CDS Rpal_4782 NC_011004.1 5145217 5145567 D KEGG: nwi:Nwi_2996 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 5145217..5145567 Rhodopseudomonas palustris TIE-1 6412468 YP_001993748.1 CDS Rpal_4783 NC_011004.1 5145801 5147993 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:blr2932 hypothetical protein; methyl-accepting chemotaxis sensory transducer complement(5145801..5147993) Rhodopseudomonas palustris TIE-1 6412469 YP_001993749.1 CDS Rpal_4784 NC_011004.1 5148123 5149094 R PFAM: Rubrerythrin; protein of unknown function DUF125 transmembrane; KEGG: bja:blr7895 hypothetical protein; rubrerythrin complement(5148123..5149094) Rhodopseudomonas palustris TIE-1 6412470 YP_001993750.1 CDS Rpal_4785 NC_011004.1 5149275 5150630 D KEGG: bra:BRADO5942 conserved hypothetical protein; signal peptide; hypothetical protein 5149275..5150630 Rhodopseudomonas palustris TIE-1 6412471 YP_001993751.1 CDS Rpal_4786 NC_011004.1 5150825 5151163 R KEGG: bja:blr7338 hypothetical protein; hypothetical protein complement(5150825..5151163) Rhodopseudomonas palustris TIE-1 6412472 YP_001993752.1 CDS Rpal_4787 NC_011004.1 5151247 5152932 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bra:BRADO5943 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(5151247..5152932) Rhodopseudomonas palustris TIE-1 6412473 YP_001993753.1 CDS Rpal_4788 NC_011004.1 5153135 5154820 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bja:bll7062 methyl accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(5153135..5154820) Rhodopseudomonas palustris TIE-1 6412474 YP_001993754.1 CDS Rpal_4789 NC_011004.1 5155065 5156654 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(5155065..5156654) Rhodopseudomonas palustris TIE-1 6412475 YP_001993755.1 CDS Rpal_4790 NC_011004.1 5156824 5157996 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase complement(5156824..5157996) Rhodopseudomonas palustris TIE-1 6412476 YP_001993756.1 CDS Rpal_4791 NC_011004.1 5158722 5160026 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:blr2976 methyl accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(5158722..5160026) Rhodopseudomonas palustris TIE-1 6412477 YP_001993757.1 CDS Rpal_4792 NC_011004.1 5160001 5160525 R TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: bja:blr2975 hypothetical protein; PAS/PAC sensor protein complement(5160001..5160525) Rhodopseudomonas palustris TIE-1 6412478 YP_001993758.1 CDS Rpal_4793 NC_011004.1 5160698 5161168 R PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_1821 hypothetical protein; N-acetyltransferase GCN5 complement(5160698..5161168) Rhodopseudomonas palustris TIE-1 6412479 YP_001993759.1 CDS Rpal_4794 NC_011004.1 5161180 5161773 R PFAM: glutathione S-transferase domain; KEGG: bja:bll7404 hypothetical glutathione S-transferase like protein; glutathione S-transferase domain-containing protein complement(5161180..5161773) Rhodopseudomonas palustris TIE-1 6412480 YP_001993760.1 CDS Rpal_4795 NC_011004.1 5161837 5162628 R TIGRFAM: outer membrane insertion C-terminal signal; KEGG: nha:Nham_1117 hypothetical protein; outer membrane insertion C-terminal signal complement(5161837..5162628) Rhodopseudomonas palustris TIE-1 6412481 YP_001993761.1 CDS Rpal_4796 NC_011004.1 5162774 5163649 R KEGG: nha:Nham_1116 hypothetical protein; hypothetical protein complement(5162774..5163649) Rhodopseudomonas palustris TIE-1 6412482 YP_001993762.1 CDS Rpal_4797 NC_011004.1 5163959 5165224 R PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll7407 fosmidomycin resistance protein; major facilitator superfamily protein complement(5163959..5165224) Rhodopseudomonas palustris TIE-1 6412483 YP_001993763.1 CDS glmM NC_011004.1 5165396 5166748 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(5165396..5166748) Rhodopseudomonas palustris TIE-1 6412484 YP_001993764.1 CDS Rpal_4799 NC_011004.1 5166950 5167111 R KEGG: nwi:Nwi_2974 hypothetical protein; hypothetical protein complement(5166950..5167111) Rhodopseudomonas palustris TIE-1 6412485 YP_001993765.1 CDS Rpal_4800 NC_011004.1 5167276 5168415 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: bja:blr7409 L-lactate dehydrogenase; L-lactate dehydrogenase (cytochrome) 5167276..5168415 Rhodopseudomonas palustris TIE-1 6412486 YP_001993766.1 CDS Rpal_4801 NC_011004.1 5168606 5169421 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr2952 probable enoyl-CoA hydratase; Enoyl-CoA hydratase/isomerase 5168606..5169421 Rhodopseudomonas palustris TIE-1 6412487 YP_001993767.1 CDS Rpal_4802 NC_011004.1 5169570 5170022 D PFAM: response regulator receiver; KEGG: bra:BRADO3693 response regulator receiver protein (CheY-like); response regulator receiver protein 5169570..5170022 Rhodopseudomonas palustris TIE-1 6412488 YP_001993768.1 CDS Rpal_4803 NC_011004.1 5170034 5170870 R TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: nha:Nham_1109 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase complement(5170034..5170870) Rhodopseudomonas palustris TIE-1 6412489 YP_001993769.1 CDS Rpal_4804 NC_011004.1 5170972 5172723 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: bra:BRADO5963 sulfate transporter with a STAS domain (C-terminal); sulfate transporter complement(5170972..5172723) Rhodopseudomonas palustris TIE-1 6412490 YP_001993770.1 CDS Rpal_4805 NC_011004.1 5172765 5173034 R KEGG: bra:BRADO5964 conserved hypothetical protein; helix-turn-helix motif; XRE family transcriptional regulator complement(5172765..5173034) Rhodopseudomonas palustris TIE-1 6412491 YP_001993771.1 CDS Rpal_4806 NC_011004.1 5173205 5175256 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(5173205..5175256) Rhodopseudomonas palustris TIE-1 6412492 YP_001993772.1 CDS Rpal_4807 NC_011004.1 5175468 5175941 R PFAM: protein of unknown function DUF992; KEGG: bja:bll7415 hypothetical protein; hypothetical protein complement(5175468..5175941) Rhodopseudomonas palustris TIE-1 6412493 YP_001993773.1 CDS Rpal_4808 NC_011004.1 5176181 5176696 R PFAM: protein of unknown function DUF992; KEGG: nha:Nham_1104 protein of unknown function DUF992; hypothetical protein complement(5176181..5176696) Rhodopseudomonas palustris TIE-1 6412494 YP_001993774.1 CDS Rpal_4809 NC_011004.1 5176821 5178023 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(5176821..5178023) Rhodopseudomonas palustris TIE-1 6412495 YP_001993775.1 CDS Rpal_4810 NC_011004.1 5178437 5179090 D PFAM: glutathione S-transferase domain; KEGG: bbt:BBta_1799 glutathione S-transferase (GST); glutathione S-transferase domain-containing protein 5178437..5179090 Rhodopseudomonas palustris TIE-1 6412496 YP_001993776.1 CDS Rpal_4811 NC_011004.1 5179227 5179418 D hypothetical protein 5179227..5179418 Rhodopseudomonas palustris TIE-1 6412497 YP_001993777.1 CDS Rpal_4812 NC_011004.1 5179509 5180672 D PFAM: glucose sorbosone dehydrogenase; KEGG: nwi:Nwi_2982 hypothetical protein; glucose sorbosone dehydrogenase 5179509..5180672 Rhodopseudomonas palustris TIE-1 6412498 YP_001993778.1 CDS Rpal_4813 NC_011004.1 5180886 5181734 D PFAM: phospholipid/glycerol acyltransferase; KEGG: azc:AZC_0007 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 5180886..5181734 Rhodopseudomonas palustris TIE-1 6412499 YP_001993779.1 CDS Rpal_4814 NC_011004.1 5181741 5182460 R unwinds double stranded DNA; replicative DNA helicase complement(5181741..5182460) Rhodopseudomonas palustris TIE-1 6412500 YP_001993780.1 CDS Rpal_4815 NC_011004.1 5182741 5183682 D PFAM: aldo/keto reductase; KEGG: bja:blr7422 oxidoreductase; aldo/keto reductase 5182741..5183682 Rhodopseudomonas palustris TIE-1 6412501 YP_001993781.1 CDS Rpal_4816 NC_011004.1 5183963 5184172 D KEGG: nwi:Nwi_2494 hypothetical protein; hypothetical protein 5183963..5184172 Rhodopseudomonas palustris TIE-1 6412502 YP_001993782.1 CDS Rpal_4817 NC_011004.1 5184169 5184876 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bbt:BBta_1791 haloacid dehalogenase/epoxide hydrolase; HAD family hydrolase 5184169..5184876 Rhodopseudomonas palustris TIE-1 6412503 YP_001993783.1 CDS Rpal_4819 NC_011004.1 5185565 5186356 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 5185565..5186356 Rhodopseudomonas palustris TIE-1 6412505 YP_001993784.1 CDS Rpal_4820 NC_011004.1 5186344 5187039 R PFAM: glutathione S-transferase domain; KEGG: bra:BRADO5989 glutathione S-transferase (GST); glutathione S-transferase domain-containing protein complement(5186344..5187039) Rhodopseudomonas palustris TIE-1 6412506 YP_001993785.1 CDS Rpal_4821 NC_011004.1 5187337 5189322 R PFAM: beta-lactamase domain protein; KEGG: rme:Rmet_2149 beta-lactamase-like protein; beta-lactamase domain-containing protein complement(5187337..5189322) Rhodopseudomonas palustris TIE-1 6412507 YP_001993786.1 CDS Rpal_4822 NC_011004.1 5189347 5189478 R hypothetical protein complement(5189347..5189478) Rhodopseudomonas palustris TIE-1 6412508 YP_001993787.1 CDS Rpal_4823 NC_011004.1 5189554 5190606 D KEGG: bbt:BBta_6293 membrane protein of unknown function; hypothetical protein 5189554..5190606 Rhodopseudomonas palustris TIE-1 6412509 YP_001993788.1 CDS Rpal_4824 NC_011004.1 5190666 5193701 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 5190666..5193701 Rhodopseudomonas palustris TIE-1 6412510 YP_001993789.1 CDS Rpal_4825 NC_011004.1 5193792 5194025 D PFAM: Domain of unknown function DUF1902; KEGG: ttj:TTHA1013 hypothetical protein; hypothetical protein 5193792..5194025 Rhodopseudomonas palustris TIE-1 6412511 YP_001993790.1 CDS Rpal_4826 NC_011004.1 5194026 5194220 D PFAM: YcfA family protein; KEGG: tth:TTC1885 hypothetical protein; hypothetical protein 5194026..5194220 Rhodopseudomonas palustris TIE-1 6412512 YP_001993791.1 CDS Rpal_4827 NC_011004.1 5194631 5194909 D PFAM: plasmid maintenance system killer; KEGG: eba:ebA1560 plasmid maintenance system killer protein; plasmid maintenance system killer protein 5194631..5194909 Rhodopseudomonas palustris TIE-1 6412513 YP_001993792.1 CDS Rpal_4828 NC_011004.1 5194921 5195226 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: sus:Acid_0689 plasmid maintenance system antidote protein, XRE family; XRE family transcriptional regulator 5194921..5195226 Rhodopseudomonas palustris TIE-1 6412514 YP_001993793.1 CDS Rpal_4829 NC_011004.1 5195340 5195654 R KEGG: nha:Nham_2927 hypothetical protein; hypothetical protein complement(5195340..5195654) Rhodopseudomonas palustris TIE-1 6412515 YP_001993794.1 CDS Rpal_4830 NC_011004.1 5196082 5197335 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(5196082..5197335) Rhodopseudomonas palustris TIE-1 6412516 YP_001993795.1 CDS Rpal_4831 NC_011004.1 5197549 5197983 D KEGG: nha:Nham_2926 hypothetical protein; hypothetical protein 5197549..5197983 Rhodopseudomonas palustris TIE-1 6412517 YP_001993796.1 CDS Rpal_4832 NC_011004.1 5198467 5198898 D KEGG: bja:blr7434 hypothetical protein; hypothetical protein 5198467..5198898 Rhodopseudomonas palustris TIE-1 6412518 YP_001993797.1 CDS Rpal_4833 NC_011004.1 5199106 5199546 D KEGG: nwi:Nwi_2500 hypothetical protein; hypothetical protein 5199106..5199546 Rhodopseudomonas palustris TIE-1 6412519 YP_001993798.1 CDS Rpal_4834 NC_011004.1 5199696 5199842 R KEGG: bra:BRADO6012 conserved hypothetical protein; signal peptide; hypothetical protein complement(5199696..5199842) Rhodopseudomonas palustris TIE-1 6412520 YP_001993799.1 CDS Rpal_4835 NC_011004.1 5199991 5200473 R PFAM: MaoC domain protein dehydratase; KEGG: nha:Nham_3098 MaoC-like dehydratase; MaoC domain-containing protein dehydratase complement(5199991..5200473) Rhodopseudomonas palustris TIE-1 6412521 YP_001993800.1 CDS Rpal_4836 NC_011004.1 5200482 5200964 R PFAM: MaoC domain protein dehydratase; KEGG: bbt:BBta_1771 hypothetical protein; MaoC domain-containing protein dehydratase complement(5200482..5200964) Rhodopseudomonas palustris TIE-1 6412522 YP_001993801.1 CDS Rpal_4837 NC_011004.1 5201050 5201343 D KEGG: nha:Nham_3100 hypothetical protein; hypothetical protein 5201050..5201343 Rhodopseudomonas palustris TIE-1 6412523 YP_001993802.1 CDS Rpal_4838 NC_011004.1 5201496 5202593 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(5201496..5202593) Rhodopseudomonas palustris TIE-1 6412524 YP_001993803.1 CDS Rpal_4839 NC_011004.1 5202721 5203341 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(5202721..5203341) Rhodopseudomonas palustris TIE-1 6412525 YP_001993804.1 CDS Rpal_4840 NC_011004.1 5203363 5204055 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc complement(5203363..5204055) Rhodopseudomonas palustris TIE-1 6412526 YP_001993805.1 CDS Rpal_4841 NC_011004.1 5204354 5204632 R PFAM: protein of unknown function DUF526; KEGG: bra:BRADO6005 hypothetical protein; hypothetical protein complement(5204354..5204632) Rhodopseudomonas palustris TIE-1 6412527 YP_001993806.1 CDS Rpal_4842 NC_011004.1 5204886 5205746 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 5204886..5205746 Rhodopseudomonas palustris TIE-1 6412528 YP_001993807.1 CDS Rpal_4843 NC_011004.1 5205743 5206882 D PFAM: protein of unknown function DUF185; KEGG: bra:BRADO6003 hypothetical protein; hypothetical protein 5205743..5206882 Rhodopseudomonas palustris TIE-1 6412529 YP_001993808.1 CDS Rpal_4844 NC_011004.1 5206879 5207652 D PFAM: protein of unknown function DUF152; KEGG: bra:BRADO6002 hypothetical protein; hypothetical protein 5206879..5207652 Rhodopseudomonas palustris TIE-1 6412530 YP_001993809.1 CDS Rpal_4845 NC_011004.1 5207885 5208493 D KEGG: bja:blr7447 hypothetical protein; hypothetical protein 5207885..5208493 Rhodopseudomonas palustris TIE-1 6412531 YP_001993810.1 CDS Rpal_4846 NC_011004.1 5208662 5209615 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 5208662..5209615 Rhodopseudomonas palustris TIE-1 6412532 YP_001993811.1 CDS Rpal_4847 NC_011004.1 5209816 5210349 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; riboflavin synthase subunit beta complement(5209816..5210349) Rhodopseudomonas palustris TIE-1 6412533 YP_001993812.1 CDS Rpal_4848 NC_011004.1 5210705 5211205 D PFAM: Protein of unknown function DUF1790; KEGG: nha:Nham_3105 hypothetical protein; hypothetical protein 5210705..5211205 Rhodopseudomonas palustris TIE-1 6412534 YP_001993813.1 CDS Rpal_4849 NC_011004.1 5211202 5211630 D PFAM: GCN5-related N-acetyltransferase; KEGG: psb:Psyr_0869 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5211202..5211630 Rhodopseudomonas palustris TIE-1 6412535 YP_001993814.1 CDS Rpal_4850 NC_011004.1 5211727 5212560 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 5211727..5212560 Rhodopseudomonas palustris TIE-1 6412536 YP_001993815.1 CDS Rpal_4851 NC_011004.1 5212726 5214114 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bja:blr7462 two-component hybrid sensor and regulator; integral membrane sensor signal transduction histidine kinase complement(5212726..5214114) Rhodopseudomonas palustris TIE-1 6412537 YP_001993816.1 CDS Rpal_4852 NC_011004.1 5214393 5215115 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_3137 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator complement(5214393..5215115) Rhodopseudomonas palustris TIE-1 6412538 YP_001993817.1 CDS Rpal_4853 NC_011004.1 5215112 5215663 R PFAM: regulatory protein MarR; KEGG: bbt:BBta_1738 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(5215112..5215663) Rhodopseudomonas palustris TIE-1 6412539 YP_001993818.1 CDS Rpal_4854 NC_011004.1 5215946 5217058 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 5215946..5217058 Rhodopseudomonas palustris TIE-1 6412540 YP_001993819.1 CDS mutL NC_011004.1 5217185 5218972 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(5217185..5218972) Rhodopseudomonas palustris TIE-1 6412541 YP_001993820.1 CDS Rpal_4856 NC_011004.1 5219207 5219626 R PFAM: Class I peptide chain release factor; KEGG: bja:blr7486 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein complement(5219207..5219626) Rhodopseudomonas palustris TIE-1 6412542 YP_001993821.1 CDS Rpal_4857 NC_011004.1 5219777 5221210 R PFAM: peptidase M16 domain protein; KEGG: bra:BRADO6071 Zn-dependent protease; peptidase M16 domain-containing protein complement(5219777..5221210) Rhodopseudomonas palustris TIE-1 6412543 YP_001993822.1 CDS Rpal_4858 NC_011004.1 5221207 5222598 R PFAM: peptidase M16 domain protein; KEGG: bja:blr7484 hypothetical zinc protease; peptidase M16 domain-containing protein complement(5221207..5222598) Rhodopseudomonas palustris TIE-1 6412544 YP_001993823.1 CDS Rpal_4859 NC_011004.1 5222769 5223485 R KEGG: bbt:BBta_1714 exported protein of unknown function; hypothetical protein complement(5222769..5223485) Rhodopseudomonas palustris TIE-1 6412545 YP_001993824.1 CDS Rpal_4860 NC_011004.1 5223566 5224060 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(5223566..5224060) Rhodopseudomonas palustris TIE-1 6412546 YP_001993825.1 CDS ileS NC_011004.1 5224219 5227233 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(5224219..5227233) Rhodopseudomonas palustris TIE-1 6412547 YP_001993826.1 CDS Rpal_4862 NC_011004.1 5227416 5227988 R PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN5256 acetyltransferase; transferase hexapeptide repeat containing protein complement(5227416..5227988) Rhodopseudomonas palustris TIE-1 6412548 YP_001993827.1 CDS Rpal_4863 NC_011004.1 5227985 5228953 R TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; riboflavin kinase; KEGG: bja:blr7480 riboflavin biosynthesis bifunctional protein; riboflavin biosynthesis protein RibF complement(5227985..5228953) Rhodopseudomonas palustris TIE-1 6412549 YP_001993828.1 CDS Rpal_4864 NC_011004.1 5229076 5229771 R PFAM: ribonuclease T2; KEGG: nha:Nham_3150 ribonuclease T2; ribonuclease T2 complement(5229076..5229771) Rhodopseudomonas palustris TIE-1 6412550 YP_001993829.1 CDS Rpal_4865 NC_011004.1 5229876 5230337 R KEGG: bbt:BBta_1733 exported protein of unknown function; hypothetical protein complement(5229876..5230337) Rhodopseudomonas palustris TIE-1 6412551 YP_001993830.1 CDS Rpal_4866 NC_011004.1 5230504 5230794 D KEGG: nha:Nham_3152 hypothetical protein; hypothetical protein 5230504..5230794 Rhodopseudomonas palustris TIE-1 6412552 YP_001993831.1 CDS Rpal_4867 NC_011004.1 5230804 5231337 D KEGG: bra:BRADO6048 conserved hypothetical protein; signal peptide; hypothetical protein 5230804..5231337 Rhodopseudomonas palustris TIE-1 6412553 YP_001993832.1 CDS Rpal_4868 NC_011004.1 5231479 5231859 D KEGG: bja:bll2461 hypothetical protein; hypothetical protein 5231479..5231859 Rhodopseudomonas palustris TIE-1 6412554 YP_001993833.1 CDS Rpal_4869 NC_011004.1 5231979 5234333 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbt:BBta_2266 outer membrane hemin/siderophore receptor protein; TonB-dependent receptor 5231979..5234333 Rhodopseudomonas palustris TIE-1 6412555 YP_001993834.1 CDS Rpal_4870 NC_011004.1 5234582 5234938 D KEGG: nwi:Nwi_2630 hypothetical protein; hypothetical protein 5234582..5234938 Rhodopseudomonas palustris TIE-1 6412556 YP_001993835.1 CDS Rpal_4871 NC_011004.1 5235086 5237359 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bxe:Bxe_B0900 TonB-dependent siderophore receptor; TonB-dependent receptor 5235086..5237359 Rhodopseudomonas palustris TIE-1 6412557 YP_001993836.1 CDS Rpal_4872 NC_011004.1 5237382 5237924 R PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_3258 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(5237382..5237924) Rhodopseudomonas palustris TIE-1 6412558 YP_001993837.1 CDS Rpal_4873 NC_011004.1 5237941 5239644 R PFAM: MscS Mechanosensitive ion channel; KEGG: fjo:Fjoh_3200 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS complement(5237941..5239644) Rhodopseudomonas palustris TIE-1 6412559 YP_001993838.1 CDS Rpal_4874 NC_011004.1 5239873 5240361 R PFAM: NUDIX hydrolase; KEGG: nha:Nham_3259 NUDIX hydrolase; NUDIX hydrolase complement(5239873..5240361) Rhodopseudomonas palustris TIE-1 6412560 YP_001993839.1 CDS Rpal_4875 NC_011004.1 5240496 5241377 D PFAM: metallophosphoesterase; KEGG: bja:bll2457 hypothetical protein; metallophosphoesterase 5240496..5241377 Rhodopseudomonas palustris TIE-1 6412561 YP_001993840.1 CDS Rpal_4876 NC_011004.1 5241423 5241974 R KEGG: nha:Nham_1099 hypothetical protein; hypothetical protein complement(5241423..5241974) Rhodopseudomonas palustris TIE-1 6412562 YP_001993841.1 CDS Rpal_4877 NC_011004.1 5242239 5242454 R KEGG: nha:Nham_1098 hypothetical protein; hypothetical protein complement(5242239..5242454) Rhodopseudomonas palustris TIE-1 6412563 YP_001993842.1 CDS Rpal_4878 NC_011004.1 5242479 5244113 R Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase complement(5242479..5244113) Rhodopseudomonas palustris TIE-1 6412564 YP_001993843.1 CDS Rpal_4879 NC_011004.1 5244327 5245769 D PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: nha:Nham_1096 transcriptional regulator, XRE family; XRE family transcriptional regulator 5244327..5245769 Rhodopseudomonas palustris TIE-1 6412565 YP_001993844.1 CDS Rpal_4880 NC_011004.1 5246048 5246947 D KEGG: azc:AZC_3857 hypothetical protein; hypothetical protein 5246048..5246947 Rhodopseudomonas palustris TIE-1 6412566 YP_001993845.1 CDS Rpal_4881 NC_011004.1 5247003 5248331 D TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: nha:Nham_1092 lytic murein transglycosylase; lytic murein transglycosylase 5247003..5248331 Rhodopseudomonas palustris TIE-1 6412567 YP_001993846.1 CDS Rpal_4882 NC_011004.1 5248413 5249597 D PFAM: extracellular ligand-binding receptor; KEGG: bja:bll0887 ABC transporter substrate-binding protein; extracellular ligand-binding receptor 5248413..5249597 Rhodopseudomonas palustris TIE-1 6412568 YP_001993847.1 CDS Rpal_4883 NC_011004.1 5249857 5250621 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_7683 branched-chain amino acid ABC transporter ATP-binding protein; ABC transporter 5249857..5250621 Rhodopseudomonas palustris TIE-1 6412569 YP_001993848.1 CDS Rpal_4884 NC_011004.1 5251035 5251757 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bja:bll0885 ABC transporter ATP-binding protein; ABC transporter 5251035..5251757 Rhodopseudomonas palustris TIE-1 6412570 YP_001993849.1 CDS Rpal_4885 NC_011004.1 5251754 5252779 D PFAM: inner-membrane translocator; KEGG: bbt:BBta_7685 branched-chain amino acid ABC transporter permease protein; inner-membrane translocator 5251754..5252779 Rhodopseudomonas palustris TIE-1 6412571 YP_001993850.1 CDS Rpal_4886 NC_011004.1 5252776 5253843 D PFAM: inner-membrane translocator; KEGG: bra:BRADO0496 branched-chain amino acid ABC transporter permease protein; inner-membrane translocator 5252776..5253843 Rhodopseudomonas palustris TIE-1 6412572 YP_001993851.1 CDS Rpal_4887 NC_011004.1 5254215 5254523 D hypothetical protein 5254215..5254523 Rhodopseudomonas palustris TIE-1 6412573 YP_001993852.1 CDS Rpal_4888 NC_011004.1 5254767 5255867 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bra:BRADO1926 N-ethylmaleimide reductase, FMN-linked; NADH:flavin oxidoreductase 5254767..5255867 Rhodopseudomonas palustris TIE-1 6412574 YP_001993853.1 CDS Rpal_4889 NC_011004.1 5256234 5258024 R KEGG: bbt:BBta_2227 periplasmic binding ABC transporter protein, sugar binding precursor; sugar ABC transporter substrate-binding protein complement(5256234..5258024) Rhodopseudomonas palustris TIE-1 6412575 YP_001993854.1 CDS Rpal_4890 NC_011004.1 5258097 5258426 R KEGG: bja:blr2441 hypothetical protein; hypothetical protein complement(5258097..5258426) Rhodopseudomonas palustris TIE-1 6412576 YP_001993855.1 CDS Rpal_4891 NC_011004.1 5258434 5259240 R PFAM: ABC transporter inner membrane protein; KEGG: bja:blr2440 ABC transporter permease protein; ABC transporter inner membrane protein complement(5258434..5259240) Rhodopseudomonas palustris TIE-1 6412577 YP_001993856.1 CDS Rpal_4892 NC_011004.1 5259240 5260142 R PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_2224 ABC transporter permease protein; ABC transporter inner membrane protein complement(5259240..5260142) Rhodopseudomonas palustris TIE-1 6412578 YP_001993857.1 CDS Rpal_4893 NC_011004.1 5260142 5261242 R PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: bra:BRADO1910 ATP-binding protein of sugar ABC transporter; ABC transporter complement(5260142..5261242) Rhodopseudomonas palustris TIE-1 6412579 YP_001993858.1 CDS Rpal_4894 NC_011004.1 5261255 5262334 R PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: bja:blr2437 ABC transporter ATP-binding protein; ABC transporter complement(5261255..5262334) Rhodopseudomonas palustris TIE-1 6412580 YP_001993859.1 CDS glpD NC_011004.1 5262331 5263866 R in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase complement(5262331..5263866) Rhodopseudomonas palustris TIE-1 6412581 YP_001993860.1 CDS Rpal_4896 NC_011004.1 5264062 5264859 R PFAM: regulatory protein DeoR; KEGG: bja:blr2433 transcriptional regulatory protein; DeoR family transcriptional regulator complement(5264062..5264859) Rhodopseudomonas palustris TIE-1 6412582 YP_001993861.1 CDS Rpal_4897 NC_011004.1 5264958 5265278 D hypothetical protein 5264958..5265278 Rhodopseudomonas palustris TIE-1 6412583 YP_001993862.1 CDS Rpal_4898 NC_011004.1 5265995 5266153 R hypothetical protein complement(5265995..5266153) Rhodopseudomonas palustris TIE-1 6412584 YP_001993863.1 CDS Rpal_4899 NC_011004.1 5266674 5267291 R KEGG: bja:blr2425 hypothetical protein; hypothetical protein complement(5266674..5267291) Rhodopseudomonas palustris TIE-1 6412585 YP_001993864.1 CDS Rpal_4900 NC_011004.1 5267309 5267923 R PFAM: regulatory protein TetR; KEGG: nha:Nham_1083 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(5267309..5267923) Rhodopseudomonas palustris TIE-1 6412586 YP_001993865.1 CDS Rpal_4901 NC_011004.1 5267941 5271078 R PFAM: acriflavin resistance protein; KEGG: bja:blr2423 cation efflux system protein; acriflavin resistance protein complement(5267941..5271078) Rhodopseudomonas palustris TIE-1 6412587 YP_001993866.1 CDS Rpal_4902 NC_011004.1 5271100 5272206 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO1901 component of multidrug efflux system; signal peptide; RND family efflux transporter MFP subunit complement(5271100..5272206) Rhodopseudomonas palustris TIE-1 6412588 YP_001993867.1 CDS Rpal_4903 NC_011004.1 5272326 5272805 R PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bja:blr2409 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase complement(5272326..5272805) Rhodopseudomonas palustris TIE-1 6412589 YP_001993868.1 CDS Rpal_4904 NC_011004.1 5272912 5275533 R KEGG: bbt:BBta_4427 sensor histidine kinase with PAS/PAC and response regulator receiver domains; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; multi-sensor hybrid histidine kinase complement(5272912..5275533) Rhodopseudomonas palustris TIE-1 6412590 YP_001993869.1 CDS Rpal_4905 NC_011004.1 5275925 5276140 D PFAM: CsbD family protein; KEGG: bbt:BBta_2201 hypothetical protein; CsbD family protein 5275925..5276140 Rhodopseudomonas palustris TIE-1 6412591 YP_001993870.1 CDS Rpal_4906 NC_011004.1 5276245 5277831 R KEGG: bra:BRADO1881 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(5276245..5277831) Rhodopseudomonas palustris TIE-1 6412592 YP_001993871.1 CDS Rpal_4907 NC_011004.1 5278079 5278294 D PFAM: SlyX family protein; KEGG: bja:bsl2402 hypothetical protein; SlyX family protein 5278079..5278294 Rhodopseudomonas palustris TIE-1 6412593 YP_001993872.1 CDS Rpal_4908 NC_011004.1 5278446 5279984 R PFAM: AMP-dependent synthetase and ligase; KEGG: cak:Caul_0814 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(5278446..5279984) Rhodopseudomonas palustris TIE-1 6412594 YP_001993873.1 CDS Rpal_4909 NC_011004.1 5280331 5280996 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: bja:bll2244 probable cAMP-regulatory protein; Crp/Fnr family transcriptional regulator complement(5280331..5280996) Rhodopseudomonas palustris TIE-1 6412595 YP_001993874.1 CDS Rpal_4910 NC_011004.1 5281175 5281588 R KEGG: bra:BRADO6425 hypothetical protein; hypothetical protein complement(5281175..5281588) Rhodopseudomonas palustris TIE-1 6412596 YP_001993875.1 CDS Rpal_4911 NC_011004.1 5281729 5282577 D PFAM: beta-lactamase domain protein; KEGG: bja:blr7890 beta-lactamase; beta-lactamase domain-containing protein 5281729..5282577 Rhodopseudomonas palustris TIE-1 6412597 YP_001993876.1 CDS Rpal_4912 NC_011004.1 5282687 5283529 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:blr7891 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 5282687..5283529 Rhodopseudomonas palustris TIE-1 6412598 YP_001993877.1 CDS Rpal_4913 NC_011004.1 5283648 5284265 D PFAM: glutathione S-transferase domain; KEGG: bra:BRADO6428 glutathione S-transferase; glutathione S-transferase domain-containing protein 5283648..5284265 Rhodopseudomonas palustris TIE-1 6412599 YP_001993878.1 CDS Rpal_4914 NC_011004.1 5284284 5284835 R TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: bbt:BBta_1204 methylated-DNA-protein-cystein methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(5284284..5284835) Rhodopseudomonas palustris TIE-1 6412600 YP_001993879.1 CDS Rpal_4915 NC_011004.1 5284879 5285427 R KEGG: spq:SPAB_04619 hypothetical protein; hypothetical protein complement(5284879..5285427) Rhodopseudomonas palustris TIE-1 6412601 YP_001993880.1 CDS Rpal_4916 NC_011004.1 5285539 5286684 R PFAM: PepSY-associated TM helix domain protein; KEGG: bja:bll7967 similar to iron-uptake factor; PepSY-associated TM helix domain-containing protein complement(5285539..5286684) Rhodopseudomonas palustris TIE-1 6412602 YP_001993881.1 CDS Rpal_4917 NC_011004.1 5286689 5289025 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbt:BBta_6052 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(5286689..5289025) Rhodopseudomonas palustris TIE-1 6412603 YP_001993882.1 CDS Rpal_4918 NC_011004.1 5289211 5289795 R KEGG: bja:blr1408 hypothetical protein; hypothetical protein complement(5289211..5289795) Rhodopseudomonas palustris TIE-1 6412604 YP_001993883.1 CDS Rpal_4919 NC_011004.1 5296343 5298373 D PFAM: peptidase M23; KEGG: nha:Nham_0660 peptidase M23B; peptidase M23 5296343..5298373 Rhodopseudomonas palustris TIE-1 6412610 YP_001993884.1 CDS Rpal_4920 NC_011004.1 5298520 5300148 D PFAM: NHL repeat containing protein; KEGG: bja:bll1406 hypothetical protein; NHL repeat containing protein 5298520..5300148 Rhodopseudomonas palustris TIE-1 6412611 YP_001993885.1 CDS Rpal_4921 NC_011004.1 5300426 5303065 R KEGG: bbt:BBta_1195 chaperone; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; Clp domain protein; ATPase AAA; ATPase AAA-2 domain protein; SMART: ATPase AAA; ATP-dependent chaperone ClpB complement(5300426..5303065) Rhodopseudomonas palustris TIE-1 6412612 YP_001993886.1 CDS Rpal_4922 NC_011004.1 5303292 5304080 D PFAM: MOSC domain containing protein; KEGG: nha:Nham_0680 hypothetical protein; MOSC domain-containing protein 5303292..5304080 Rhodopseudomonas palustris TIE-1 6412613 YP_001993887.1 CDS Rpal_4923 NC_011004.1 5304287 5305030 R KEGG: bbt:BBta_1193 exported protein of unknown function; hypothetical protein complement(5304287..5305030) Rhodopseudomonas palustris TIE-1 6412614 YP_001993888.1 CDS Rpal_4924 NC_011004.1 5305252 5305947 R TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; methyltransferase type 11; methyltransferase type 12; KEGG: nwi:Nwi_0586 methionine biosynthesis MetW; methionine biosynthesis protein MetW complement(5305252..5305947) Rhodopseudomonas palustris TIE-1 6412615 YP_001993889.1 CDS metX NC_011004.1 5305950 5307149 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(5305950..5307149) Rhodopseudomonas palustris TIE-1 6412616 YP_001993890.1 CDS Rpal_4926 NC_011004.1 5307505 5308350 D PFAM: Chorismate mutase; KEGG: nha:Nham_0675 hypothetical protein; hypothetical protein 5307505..5308350 Rhodopseudomonas palustris TIE-1 6412617 YP_001993891.1 CDS Rpal_4927 NC_011004.1 5308393 5309490 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 5308393..5309490 Rhodopseudomonas palustris TIE-1 6412618 YP_001993892.1 CDS Rpal_4928 NC_011004.1 5309487 5310428 D dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate; cyclohexadienyl dehydrogenase 5309487..5310428 Rhodopseudomonas palustris TIE-1 6412619 YP_001993893.1 CDS Rpal_4929 NC_011004.1 5310881 5311159 D PFAM: protein of unknown function DUF497; KEGG: mrd:Mrad2831_1006 hypothetical protein; hypothetical protein 5310881..5311159 Rhodopseudomonas palustris TIE-1 6412620 YP_001993894.1 CDS Rpal_4930 NC_011004.1 5311113 5311424 D KEGG: mrd:Mrad2831_1007 hypothetical protein; hypothetical protein 5311113..5311424 Rhodopseudomonas palustris TIE-1 6412621 YP_001993895.1 CDS Rpal_4931 NC_011004.1 5311503 5312483 R PFAM: Mg2 transporter protein CorA family protein; KEGG: nha:Nham_0762 Mg2+ transporter protein, CorA-like; Mg2 transporter protein CorA family protein complement(5311503..5312483) Rhodopseudomonas palustris TIE-1 6412622 YP_001993896.1 CDS Rpal_4932 NC_011004.1 5312830 5313513 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: nwi:Nwi_0619 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 5312830..5313513 Rhodopseudomonas palustris TIE-1 6412623 YP_001993897.1 CDS Rpal_4933 NC_011004.1 5313845 5314924 R PFAM: Extensin family protein; KEGG: bra:BRADO2141 hypothetical protein; extensin family protein complement(5313845..5314924) Rhodopseudomonas palustris TIE-1 6412624 YP_001993898.1 CDS Rpal_4934 NC_011004.1 5315045 5316673 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 5315045..5316673 Rhodopseudomonas palustris TIE-1 6412625 YP_001993899.1 CDS Rpal_4935 NC_011004.1 5316977 5317345 D PFAM: protein of unknown function DUF559; KEGG: nwi:Nwi_2534 protein of unknown function DUF559; hypothetical protein 5316977..5317345 Rhodopseudomonas palustris TIE-1 6412626 YP_001993900.1 CDS Rpal_4936 NC_011004.1 5317639 5318484 D KEGG: bja:bll2618 hypothetical protein; hypothetical protein 5317639..5318484 Rhodopseudomonas palustris TIE-1 6412627 YP_001993901.1 CDS Rpal_4937 NC_011004.1 5318565 5318864 R KEGG: bbt:BBta_6131 exported protein of unknown function; hypothetical protein complement(5318565..5318864) Rhodopseudomonas palustris TIE-1 6412628 YP_001993902.1 CDS Rpal_4938 NC_011004.1 5318943 5319386 R KEGG: azc:AZC_2428 hypothetical protein; hypothetical protein complement(5318943..5319386) Rhodopseudomonas palustris TIE-1 6412629 YP_001993903.1 CDS Rpal_4939 NC_011004.1 5319383 5319802 R KEGG: pla:Plav_0952 hypothetical protein; hypothetical protein complement(5319383..5319802) Rhodopseudomonas palustris TIE-1 6412630 YP_001993904.1 CDS Rpal_4940 NC_011004.1 5319799 5320548 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(5319799..5320548) Rhodopseudomonas palustris TIE-1 6412631 YP_001993905.1 CDS Rpal_4941 NC_011004.1 5321317 5323008 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bra:BRADO2557 methyl-accepting chemotaxis receptor/sensory transducer; methyl-accepting chemotaxis sensory transducer 5321317..5323008 Rhodopseudomonas palustris TIE-1 6412632 YP_001993906.1 CDS Rpal_4942 NC_011004.1 5323217 5324812 D KEGG: bja:bll5850 hypothetical protein; hypothetical protein 5323217..5324812 Rhodopseudomonas palustris TIE-1 6412633 YP_001993907.1 CDS Rpal_4943 NC_011004.1 5324802 5326037 D KEGG: bja:bll5849 hypothetical protein; hypothetical protein 5324802..5326037 Rhodopseudomonas palustris TIE-1 6412634 YP_001993908.1 CDS Rpal_4944 NC_011004.1 5326034 5327494 D PFAM: pyridoxal-dependent decarboxylase; KEGG: nha:Nham_1334 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase 5326034..5327494 Rhodopseudomonas palustris TIE-1 6412635 YP_001993909.1 CDS Rpal_4945 NC_011004.1 5327773 5328600 R PFAM: metallophosphoesterase; KEGG: nha:Nham_3527 hypothetical protein; metallophosphoesterase complement(5327773..5328600) Rhodopseudomonas palustris TIE-1 6412636 YP_001993910.1 CDS Rpal_4946 NC_011004.1 5328602 5329195 R PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: bra:BRADO1138 antifreeze protein, type I : 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(5328602..5329195) Rhodopseudomonas palustris TIE-1 6412637 YP_001993911.1 CDS Rpal_4947 NC_011004.1 5329550 5330068 D KEGG: bra:BRADO4648 hypothetical protein; hypothetical protein 5329550..5330068 Rhodopseudomonas palustris TIE-1 6412639 YP_001993912.1 CDS Rpal_4948 NC_011004.1 5330082 5330261 R hypothetical protein complement(5330082..5330261) Rhodopseudomonas palustris TIE-1 6412640 YP_001993913.1 CDS Rpal_4949 NC_011004.1 5330342 5330881 D KEGG: mxa:MXAN_4460 valyl-tRNA synthetase; valyl-tRNA synthetase 5330342..5330881 Rhodopseudomonas palustris TIE-1 6412641 YP_001993914.1 CDS Rpal_4950 NC_011004.1 5330963 5331352 R PFAM: rhodanese domain protein; KEGG: bra:BRADO5552 rhodanese-related sulfurtransferase; rhodanese domain-containing protein complement(5330963..5331352) Rhodopseudomonas palustris TIE-1 6412642 YP_001993915.1 CDS Rpal_4951 NC_011004.1 5331376 5331852 R PFAM: isoprenylcysteine carboxyl methyltransferase; KEGG: sme:SMc01259 hypothetical protein; isoprenylcysteine carboxyl methyltransferase complement(5331376..5331852) Rhodopseudomonas palustris TIE-1 6412643 YP_001993916.1 CDS Rpal_4952 NC_011004.1 5331877 5333169 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xau:Xaut_1514 flavocytochrome C sulphide dehydrogenase flavin-binding; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(5331877..5333169) Rhodopseudomonas palustris TIE-1 6412644 YP_001993917.1 CDS Rpal_4953 NC_011004.1 5333209 5334474 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome C sulphide dehydrogenase flavin-binding; KEGG: xau:Xaut_1514 flavocytochrome C sulphide dehydrogenase flavin-binding; flavocytochrome c sulfide dehydrogenase complement(5333209..5334474) Rhodopseudomonas palustris TIE-1 6412645 YP_001993918.1 CDS Rpal_4954 NC_011004.1 5334502 5334921 R KEGG: sil:SPO1000 diheme cytochrome C SoxE; cytochrome c553-like protein complement(5334502..5334921) Rhodopseudomonas palustris TIE-1 6412646 YP_001993919.1 CDS Rpal_4955 NC_011004.1 5334961 5336073 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dar:Daro_3126 YeeE/YedE; hypothetical protein complement(5334961..5336073) Rhodopseudomonas palustris TIE-1 6412647 YP_001993920.1 CDS Rpal_4956 NC_011004.1 5336285 5337040 R KEGG: bra:BRADO3185 sulfite oxidase cytochrome subunit (SoxD); sulfite oxidase cytochrome subunit SoxD complement(5336285..5337040) Rhodopseudomonas palustris TIE-1 6412648 YP_001993921.1 CDS Rpal_4957 NC_011004.1 5337024 5338319 R PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: xau:Xaut_1518 oxidoreductase molybdopterin binding; molybdopterin binding oxidoreductase complement(5337024..5338319) Rhodopseudomonas palustris TIE-1 6412649 YP_001993922.1 CDS Rpal_4958 NC_011004.1 5338389 5340086 R PFAM: 5'-nucleotidase; KEGG: xau:Xaut_1519 5'-nucleotidase domain protein; 5'-nucleotidase complement(5338389..5340086) Rhodopseudomonas palustris TIE-1 6412650 YP_001993923.1 CDS Rpal_4959 NC_011004.1 5340229 5340558 R PFAM: Sulphur oxidation protein SoxZ; KEGG: xau:Xaut_1520 sulphur oxidation protein SoxZ; sulfur oxidation protein SoxZ complement(5340229..5340558) Rhodopseudomonas palustris TIE-1 6412651 YP_001993924.1 CDS Rpal_4960 NC_011004.1 5340597 5341061 R with SoxZ catalyzes the oxidation of sulfur compounds; sulfur oxidation protein SoxY complement(5340597..5341061) Rhodopseudomonas palustris TIE-1 6412652 YP_001993925.1 CDS Rpal_4961 NC_011004.1 5341248 5342069 D KEGG: xau:Xaut_1522 hypothetical protein; hypothetical protein 5341248..5342069 Rhodopseudomonas palustris TIE-1 6412653 YP_001993926.1 CDS Rpal_4962 NC_011004.1 5342083 5342826 D KEGG: xau:Xaut_1523 hypothetical protein; hypothetical protein 5342083..5342826 Rhodopseudomonas palustris TIE-1 6412654 YP_001993927.1 CDS Rpal_4963 NC_011004.1 5342998 5343495 D PFAM: protein of unknown function DUF336; KEGG: nha:Nham_3668 protein of unknown function DUF336; hypothetical protein 5342998..5343495 Rhodopseudomonas palustris TIE-1 6412655 YP_001993928.1 CDS Rpal_4964 NC_011004.1 5343772 5344365 R KEGG: bja:blr3510 probable thioredoxin; thioredoxin complement(5343772..5344365) Rhodopseudomonas palustris TIE-1 6412656 YP_001993929.1 CDS Rpal_4965 NC_011004.1 5344394 5345137 R PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: bcs:BCAN_B0584 cytochrome C biogenesis protein transmembrane region; cytochrome c biogenesis protein transmembrane protein complement(5344394..5345137) Rhodopseudomonas palustris TIE-1 6412657 YP_001993930.1 CDS Rpal_4966 NC_011004.1 5345178 5345582 D KEGG: xau:Xaut_1526 hypothetical protein; hypothetical protein 5345178..5345582 Rhodopseudomonas palustris TIE-1 6412658 YP_001993931.1 CDS Rpal_4967 NC_011004.1 5345621 5345995 D PFAM: regulatory protein ArsR; KEGG: xau:Xaut_1527 regulatory protein ArsR; ArsR family transcriptional regulator 5345621..5345995 Rhodopseudomonas palustris TIE-1 6412659 YP_001993932.1 CDS Rpal_4968 NC_011004.1 5346072 5347274 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: xau:Xaut_1528 protein of unknown function DUF395 YeeE/YedE; hypothetical protein 5346072..5347274 Rhodopseudomonas palustris TIE-1 6412660 YP_001993933.1 CDS Rpal_4969 NC_011004.1 5347189 5347641 R PFAM: Domain of unknown function DUF1791; KEGG: bra:BRADO1133 conserved hypothetical protein; signal peptide; YchN-like; hypothetical protein complement(5347189..5347641) Rhodopseudomonas palustris TIE-1 6412661 YP_001993934.1 CDS Rpal_4970 NC_011004.1 5347873 5348928 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: nha:Nham_2696 protein of unknown function DUF395, YeeE/YedE; hypothetical protein complement(5347873..5348928) Rhodopseudomonas palustris TIE-1 6412662 YP_001993935.1 CDS Rpal_4971 NC_011004.1 5349128 5349433 R KEGG: bbt:BBta_6241 hypothetical protein; hypothetical protein complement(5349128..5349433) Rhodopseudomonas palustris TIE-1 6412663 YP_001993936.1 CDS Rpal_4972 NC_011004.1 5349430 5352525 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: bja:blr4112 probable cation efflux system protein; CzcA family heavy metal efflux pump complement(5349430..5352525) Rhodopseudomonas palustris TIE-1 6412664 YP_001993937.1 CDS Rpal_4973 NC_011004.1 5352526 5353632 R TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: dar:Daro_2800 secretion protein HlyD; RND family efflux transporter MFP subunit complement(5352526..5353632) Rhodopseudomonas palustris TIE-1 6412665 YP_001993938.1 CDS Rpal_4974 NC_011004.1 5353828 5355150 R PFAM: chemotaxis sensory transducer; KEGG: bja:blr2976 methyl accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(5353828..5355150) Rhodopseudomonas palustris TIE-1 6412666 YP_001993939.1 CDS Rpal_4975 NC_011004.1 5355113 5355649 R TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: bja:blr2975 hypothetical protein; PAS/PAC sensor protein complement(5355113..5355649) Rhodopseudomonas palustris TIE-1 6412667 YP_001993940.1 CDS Rpal_4976 NC_011004.1 5355819 5357141 R PFAM: chemotaxis sensory transducer; KEGG: bja:blr2976 methyl accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(5355819..5357141) Rhodopseudomonas palustris TIE-1 6412668 YP_001993941.1 CDS Rpal_4977 NC_011004.1 5357104 5357637 R TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; KEGG: rru:Rru_A2378 transcriptional regulator with PAS/PAC domain; PAS/PAC sensor protein complement(5357104..5357637) Rhodopseudomonas palustris TIE-1 6412669 YP_001993942.1 CDS Rpal_4978 NC_011004.1 5357814 5358863 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: bbt:BBta_2321 adenine glycosylase MutY; A/G-specific adenine glycosylase complement(5357814..5358863) Rhodopseudomonas palustris TIE-1 6412670 YP_001993943.1 CDS Rpal_4979 NC_011004.1 5358970 5359449 D PFAM: protein of unknown function DUF1159; KEGG: nha:Nham_3228 protein of unknown function DUF1159; hypothetical protein 5358970..5359449 Rhodopseudomonas palustris TIE-1 6412671 YP_001993944.1 CDS Rpal_4980 NC_011004.1 5359592 5360266 D PFAM: DSBA oxidoreductase; KEGG: bra:BRADO2001 conserved hypothetical protein; signal peptide; twin-arginine translocation signal domain protein; DSBA oxidoreductase 5359592..5360266 Rhodopseudomonas palustris TIE-1 6412672 YP_001993945.1 CDS Rpal_4981 NC_011004.1 5360576 5360809 D hypothetical protein 5360576..5360809 Rhodopseudomonas palustris TIE-1 6412673 YP_001993946.1 CDS Rpal_4982 NC_011004.1 5360806 5361021 D hypothetical protein 5360806..5361021 Rhodopseudomonas palustris TIE-1 6412674 YP_001993947.1 CDS Rpal_4983 NC_011004.1 5362130 5365594 D TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: bja:bll2496 chromosome segregation protein; chromosome segregation protein SMC 5362130..5365594 Rhodopseudomonas palustris TIE-1 6412675 YP_001993948.1 CDS Rpal_4984 NC_011004.1 5365869 5366837 D PFAM: ribosomal small subunit Rsm22; KEGG: nha:Nham_3231 methyltransferase type 12; ribosomal small subunit Rsm22 5365869..5366837 Rhodopseudomonas palustris TIE-1 6412676 YP_001993949.1 CDS Rpal_4985 NC_011004.1 5366953 5367504 D PFAM: LemA family protein; KEGG: nha:Nham_3233 LemA; LemA family protein 5366953..5367504 Rhodopseudomonas palustris TIE-1 6412677 YP_001993950.1 CDS Rpal_4986 NC_011004.1 5367640 5368830 D PFAM: peptidase M48 Ste24p; peptidase M56 BlaR1; KEGG: bbt:BBta_2314 protease HtpX; peptidase M48 Ste24p 5367640..5368830 Rhodopseudomonas palustris TIE-1 6412678 YP_001993951.1 CDS Rpal_4987 NC_011004.1 5369011 5369784 D KEGG: bja:bll2492 hypothetical protein; hypothetical protein 5369011..5369784 Rhodopseudomonas palustris TIE-1 6412679 YP_001993952.1 CDS Rpal_4988 NC_011004.1 5369843 5370508 D KEGG: nha:Nham_3236 hypothetical protein; hypothetical protein 5369843..5370508 Rhodopseudomonas palustris TIE-1 6412680 YP_001993953.1 CDS Rpal_4989 NC_011004.1 5370706 5371668 D PFAM: transposase IS4 family protein; KEGG: atc:AGR_L_863gl hypothetical protein; transposase IS4 family protein 5370706..5371668 Rhodopseudomonas palustris TIE-1 6412681 YP_001993954.1 CDS Rpal_4990 NC_011004.1 5371936 5372481 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(5371936..5372481) Rhodopseudomonas palustris TIE-1 6412682 YP_001993955.1 CDS Rpal_4991 NC_011004.1 5372632 5374791 R trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; anthranilate synthase complement(5372632..5374791) Rhodopseudomonas palustris TIE-1 6412683 YP_001993956.1 CDS Rpal_4992 NC_011004.1 5375882 5376058 D KEGG: bbt:BBta_1659 hypothetical protein; hypothetical protein 5375882..5376058 Rhodopseudomonas palustris TIE-1 6412684 YP_001993957.1 CDS Rpal_4993 NC_011004.1 5376095 5376313 R PFAM: PhnA protein; KEGG: sme:SMc00099 probable alkylphosphonate uptake protein; PhnA protein complement(5376095..5376313) Rhodopseudomonas palustris TIE-1 6412685 YP_001993958.1 CDS Rpal_4994 NC_011004.1 5376447 5377136 R PFAM: OmpW family protein; KEGG: bbt:BBta_0946 outer membrane protein precursor of unknown function; OmpW family protein complement(5376447..5377136) Rhodopseudomonas palustris TIE-1 6412686 YP_001993959.1 CDS Rpal_4995 NC_011004.1 5377369 5377629 R KEGG: bja:bsr1310 hypothetical protein; hypothetical protein complement(5377369..5377629) Rhodopseudomonas palustris TIE-1 6412687 YP_001993960.1 CDS Rpal_4996 NC_011004.1 5377808 5379718 R PFAM: AMP-dependent synthetase and ligase; KEGG: bbt:BBta_0943 propionate--CoA ligase; AMP-dependent synthetase and ligase complement(5377808..5379718) Rhodopseudomonas palustris TIE-1 6412688 YP_001993961.1 CDS Rpal_4997 NC_011004.1 5379899 5380645 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bbt:BBta_0942 hypothetical protein; hypothetical protein complement(5379899..5380645) Rhodopseudomonas palustris TIE-1 6412689 YP_001993962.1 CDS Rpal_4998 NC_011004.1 5380831 5381634 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr1304 dehydrogenase; short-chain dehydrogenase/reductase SDR complement(5380831..5381634) Rhodopseudomonas palustris TIE-1 6412690 YP_001993963.1 CDS Rpal_4999 NC_011004.1 5381734 5383509 R PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: azc:AZC_3721 elongator protein; radical SAM domain-containing protein complement(5381734..5383509) Rhodopseudomonas palustris TIE-1 6412691 YP_001993964.1 CDS Rpal_5000 NC_011004.1 5383657 5384019 R PFAM: Domain of unknown function DUF1850; KEGG: bja:blr1303 hypothetical protein; hypothetical protein complement(5383657..5384019) Rhodopseudomonas palustris TIE-1 6412692 YP_001993965.1 CDS Rpal_5001 NC_011004.1 5384028 5386148 R TIGRFAM: TRAP transporter 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bra:BRADO6597 transporter TrapT family, fused DctQ-M subunits, C4-dicarboxylate transport; TRAP transporter 4TM/12TM fusion protein complement(5384028..5386148) Rhodopseudomonas palustris TIE-1 6412693 YP_001993966.1 CDS Rpal_5002 NC_011004.1 5386295 5387242 R TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bja:blr1301 immunogenic protein precursor; TRAP transporter solute receptor, TAXI family complement(5386295..5387242) Rhodopseudomonas palustris TIE-1 6412694 YP_001993967.1 CDS Rpal_5003 NC_011004.1 5387398 5388663 D PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_2491 major facilitator superfamily MFS_1; major facilitator superfamily protein 5387398..5388663 Rhodopseudomonas palustris TIE-1 6412695 YP_001993968.1 CDS Rpal_5004 NC_011004.1 5388681 5389037 R PFAM: response regulator receiver; KEGG: rsq:Rsph17025_3337 hypothetical protein; response regulator receiver protein complement(5388681..5389037) Rhodopseudomonas palustris TIE-1 6412696 YP_001993969.1 CDS Rpal_5005 NC_011004.1 5389047 5390051 R PFAM: HWE histidine kinase; KEGG: rsq:Rsph17025_3338 hypothetical protein; signal transduction histidine kinase complement(5389047..5390051) Rhodopseudomonas palustris TIE-1 6412697 YP_001993970.1 CDS Rpal_5006 NC_011004.1 5390273 5391832 D KEGG: bay:RBAM_002930 PhoD; alkaline phosphatase 5390273..5391832 Rhodopseudomonas palustris TIE-1 6412698 YP_001993971.1 CDS Rpal_5007 NC_011004.1 5391968 5392975 D PFAM: conserved hypothetical protein; KEGG: reh:H16_B0202 probable extra-cytoplasmic solute receptor; hypothetical protein 5391968..5392975 Rhodopseudomonas palustris TIE-1 6412699 YP_001993972.1 CDS Rpal_5008 NC_011004.1 5393217 5394431 D PFAM: EAL domain protein; KEGG: bja:blr0402 two-component response regulator; diguanylate phosphodiesterase 5393217..5394431 Rhodopseudomonas palustris TIE-1 6412700 YP_001993973.1 CDS Rpal_5009 NC_011004.1 5394448 5394936 R KEGG: bbt:BBta_0936 exported protein of unknown function; hypothetical protein complement(5394448..5394936) Rhodopseudomonas palustris TIE-1 6412701 YP_001993974.1 CDS Rpal_5010 NC_011004.1 5395182 5395484 D KEGG: bja:bll1299 hypothetical protein; hypothetical protein 5395182..5395484 Rhodopseudomonas palustris TIE-1 6412702 YP_001993975.1 CDS Rpal_5011 NC_011004.1 5395503 5396714 R KEGG: nwi:Nwi_0278 hypothetical protein; hypothetical protein complement(5395503..5396714) Rhodopseudomonas palustris TIE-1 6412703 YP_001993976.1 CDS Rpal_5012 NC_011004.1 5396850 5397476 R PFAM: NUDIX hydrolase; KEGG: bja:blr1297 hypothetical protein; NUDIX hydrolase complement(5396850..5397476) Rhodopseudomonas palustris TIE-1 6412704 YP_001993977.1 CDS Rpal_5013 NC_011004.1 5397556 5397981 D PFAM: thioesterase superfamily protein; KEGG: bja:bll1296 hypothetical protein; thioesterase superfamily protein 5397556..5397981 Rhodopseudomonas palustris TIE-1 6412705 YP_001993978.1 CDS Rpal_5014 NC_011004.1 5397997 5398743 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mrd:Mrad2831_3556 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase complement(5397997..5398743) Rhodopseudomonas palustris TIE-1 6412706 YP_001993979.1 CDS Rpal_5015 NC_011004.1 5399019 5399408 R PFAM: response regulator receiver; KEGG: bbt:BBta_3939 two-component response regulatory protein, response regulator receiver; response regulator receiver protein complement(5399019..5399408) Rhodopseudomonas palustris TIE-1 6412707 YP_001993980.1 CDS Rpal_5016 NC_011004.1 5399701 5400450 R KEGG: mrd:Mrad2831_6503 hypothetical protein; hypothetical protein complement(5399701..5400450) Rhodopseudomonas palustris TIE-1 6412708 YP_001993981.1 CDS Rpal_5017 NC_011004.1 5401039 5401221 R PFAM: protein of unknown function DUF329; KEGG: nwi:Nwi_0276 zinc-binding protein; zinc-binding protein complement(5401039..5401221) Rhodopseudomonas palustris TIE-1 6412710 YP_001993982.1 CDS Rpal_5018 NC_011004.1 5401211 5401834 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(5401211..5401834) Rhodopseudomonas palustris TIE-1 6412711 YP_001993983.1 CDS Rpal_5019 NC_011004.1 5401931 5403097 R KEGG: bxe:Bxe_A2255 predicted ATPase, RecF-like; RecF-like ATPase complement(5401931..5403097) Rhodopseudomonas palustris TIE-1 6412712 YP_001993984.1 CDS Rpal_5020 NC_011004.1 5403676 5404143 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bra:BRADO6635 arsenate reductase (ArsC-like); protein tyrosine phosphatase complement(5403676..5404143) Rhodopseudomonas palustris TIE-1 6412713 YP_001993985.1 CDS Rpal_5021 NC_011004.1 5404202 5404693 R PFAM: conserved hypothetical protein; KEGG: bja:blr1257 hypothetical protein; hypothetical protein complement(5404202..5404693) Rhodopseudomonas palustris TIE-1 6412714 YP_001993986.1 CDS hisD NC_011004.1 5404690 5405985 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(5404690..5405985) Rhodopseudomonas palustris TIE-1 6412715 YP_001993987.1 CDS Rpal_5023 NC_011004.1 5406109 5406564 R KEGG: bra:BRADO6638 hypothetical protein; hypothetical protein complement(5406109..5406564) Rhodopseudomonas palustris TIE-1 6412716 YP_001993988.1 CDS Rpal_5024 NC_011004.1 5406584 5407873 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(5406584..5407873) Rhodopseudomonas palustris TIE-1 6412717 YP_001993989.1 CDS Rpal_5025 NC_011004.1 5408033 5408323 R KEGG: bbt:BBta_7859 exported protein of unknown function; hypothetical protein complement(5408033..5408323) Rhodopseudomonas palustris TIE-1 6412718 YP_001993990.1 CDS Rpal_5026 NC_011004.1 5408557 5408844 D KEGG: bbt:BBta_4382 exported protein of unknown function; hypothetical protein 5408557..5408844 Rhodopseudomonas palustris TIE-1 6412719 YP_001993991.1 CDS Rpal_5027 NC_011004.1 5408914 5410605 R PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: bbt:BBta_0894 nucleotide-disulphide oxidoreductase; cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(5408914..5410605) Rhodopseudomonas palustris TIE-1 6412720 YP_001993992.1 CDS Rpal_5028 NC_011004.1 5410637 5410846 R KEGG: bra:BRADO6641 hypothetical protein; hypothetical protein complement(5410637..5410846) Rhodopseudomonas palustris TIE-1 6412721 YP_001993993.1 CDS Rpal_5029 NC_011004.1 5410921 5411367 D KEGG: rme:Rmet_1763 protein of unknown function DUF1486; hypothetical protein 5410921..5411367 Rhodopseudomonas palustris TIE-1 6412722 YP_001993994.1 CDS Rpal_5030 NC_011004.1 5411830 5412219 D KEGG: nha:Nham_3021 hypothetical protein; hypothetical protein 5411830..5412219 Rhodopseudomonas palustris TIE-1 6412724 YP_001993995.1 CDS Rpal_5031 NC_011004.1 5412344 5413633 D KEGG: nha:Nham_3782 hypothetical protein; hypothetical protein 5412344..5413633 Rhodopseudomonas palustris TIE-1 6412725 YP_001993996.1 CDS Rpal_5032 NC_011004.1 5413670 5414911 R KEGG: bja:bll6790 4-hydroxybutyrate CoA transferase; 4-hydroxybutyrate CoA-transferase complement(5413670..5414911) Rhodopseudomonas palustris TIE-1 6412726 YP_001993997.1 CDS Rpal_5033 NC_011004.1 5414938 5416104 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bja:bll6791 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(5414938..5416104) Rhodopseudomonas palustris TIE-1 6412727 YP_001993998.1 CDS Rpal_5034 NC_011004.1 5416157 5417446 R TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:bll6792 transmembrane protein; TRAP dicarboxylate transporter subunit DctM complement(5416157..5417446) Rhodopseudomonas palustris TIE-1 6412728 YP_001993999.1 CDS Rpal_5035 NC_011004.1 5417458 5418009 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bja:bll6793 hypothetical protein; tripartite AtP-independent periplasmic transporter subunit DctQ complement(5417458..5418009) Rhodopseudomonas palustris TIE-1 6412729 YP_001994000.1 CDS Rpal_5036 NC_011004.1 5418043 5419068 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:bll6794 hypothetical protein; TRAP dicarboxylate transporter subunit DctP complement(5418043..5419068) Rhodopseudomonas palustris TIE-1 6412730 YP_001994001.1 CDS Rpal_5037 NC_011004.1 5419272 5420468 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr6795 racemase; L-carnitine dehydratase/bile acid-inducible protein F 5419272..5420468 Rhodopseudomonas palustris TIE-1 6412731 YP_001994002.1 CDS Rpal_5038 NC_011004.1 5420512 5420964 D PFAM: MaoC domain protein dehydratase; KEGG: bja:blr6796 probable acyl dehydratase; MaoC domain-containing protein dehydratase 5420512..5420964 Rhodopseudomonas palustris TIE-1 6412732 YP_001994003.1 CDS Rpal_5039 NC_011004.1 5420964 5421812 D PFAM: HpcH/HpaI aldolase; KEGG: bja:blr6797 citrate lyase; citryl-CoA lyase 5420964..5421812 Rhodopseudomonas palustris TIE-1 6412733 YP_001994004.1 CDS Rpal_5040 NC_011004.1 5421853 5422584 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bja:blr6798 transcriptional regulatory protein; IclR family transcriptional regulator 5421853..5422584 Rhodopseudomonas palustris TIE-1 6412734 YP_001994005.1 CDS Rpal_5041 NC_011004.1 5422710 5423753 R catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase complement(5422710..5423753) Rhodopseudomonas palustris TIE-1 6412735 YP_001994006.1 CDS Rpal_5042 NC_011004.1 5423841 5424746 D KEGG: reu:Reut_B4967 ketopantoate reductase ApbA/PanE; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 5423841..5424746 Rhodopseudomonas palustris TIE-1 6412736 YP_001994007.1 CDS Rpal_5043 NC_011004.1 5424748 5425497 R PFAM: nuclease (SNase domain protein); KEGG: bbt:BBta_2752 exported protein of unknown function; nuclease complement(5424748..5425497) Rhodopseudomonas palustris TIE-1 6412737 YP_001994008.1 CDS Rpal_5044 NC_011004.1 5425625 5426539 D PFAM: thioesterase superfamily protein; KEGG: bja:blr7284 hypothetical protein; thioesterase superfamily protein 5425625..5426539 Rhodopseudomonas palustris TIE-1 6412738 YP_001994009.1 CDS Rpal_5045 NC_011004.1 5426717 5427919 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bra:BRADO2426 diguanylate cyclase (GGDEF); diguanylate cyclase 5426717..5427919 Rhodopseudomonas palustris TIE-1 6412739 YP_001994010.1 CDS Rpal_5046 NC_011004.1 5427920 5429116 R TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: pna:Pnap_3569 acetate kinase; acetate kinase complement(5427920..5429116) Rhodopseudomonas palustris TIE-1 6412740 YP_001994011.1 CDS Rpal_5047 NC_011004.1 5429113 5430528 R PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: cak:Caul_1955 phosphate acetyltransferase; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase complement(5429113..5430528) Rhodopseudomonas palustris TIE-1 6412741 YP_001994012.1 CDS Rpal_5048 NC_011004.1 5430552 5431313 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase complement(5430552..5431313) Rhodopseudomonas palustris TIE-1 6412742 YP_001994013.1 CDS Rpal_5049 NC_011004.1 5431396 5432265 R PFAM: protein of unknown function DUF344; KEGG: rfr:Rfer_4046 protein of unknown function DUF344; hypothetical protein complement(5431396..5432265) Rhodopseudomonas palustris TIE-1 6412743 YP_001994014.1 CDS Rpal_5050 NC_011004.1 5432647 5434029 D KEGG: bbt:BBta_5233 membrane protein of unknown function; hypothetical protein 5432647..5434029 Rhodopseudomonas palustris TIE-1 6412744 YP_001994015.1 CDS Rpal_5051 NC_011004.1 5434109 5434513 R KEGG: nha:Nham_0272 hypothetical protein; hypothetical protein complement(5434109..5434513) Rhodopseudomonas palustris TIE-1 6412745 YP_001994016.1 CDS Rpal_5052 NC_011004.1 5434744 5436306 R KEGG: bja:blr2591 serine protease DO-like protease; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(5434744..5436306) Rhodopseudomonas palustris TIE-1 6412746 YP_001994017.1 CDS Rpal_5053 NC_011004.1 5436567 5437055 R KEGG: nha:Nham_1775 hypothetical protein; hypothetical protein complement(5436567..5437055) Rhodopseudomonas palustris TIE-1 6412747 YP_001994018.1 CDS Rpal_5054 NC_011004.1 5437164 5437448 R KEGG: nha:Nham_1414 hypothetical protein; hypothetical protein complement(5437164..5437448) Rhodopseudomonas palustris TIE-1 6412748 YP_001994019.1 CDS Rpal_5055 NC_011004.1 5437606 5439171 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO1747 ABC transporter (ATP-binding protein); ABC transporter 5437606..5439171 Rhodopseudomonas palustris TIE-1 6412749 YP_001994020.1 CDS Rpal_5056 NC_011004.1 5439155 5440246 D PFAM: inner-membrane translocator; KEGG: bja:blr6156 ABC transporter permease protein; inner-membrane translocator 5439155..5440246 Rhodopseudomonas palustris TIE-1 6412750 YP_001994021.1 CDS Rpal_5057 NC_011004.1 5440233 5441150 D PFAM: inner-membrane translocator; KEGG: bja:blr6157 ABC transporter permease protein; inner-membrane translocator 5440233..5441150 Rhodopseudomonas palustris TIE-1 6412751 YP_001994022.1 CDS Rpal_5058 NC_011004.1 5441232 5442329 D PFAM: basic membrane lipoprotein; KEGG: bbt:BBta_2057 ABC transporter (substrate-binding protein); ABC transporter substrate-binding protein 5441232..5442329 Rhodopseudomonas palustris TIE-1 6412752 YP_001994023.1 CDS Rpal_5059 NC_011004.1 5442525 5443490 R SMART: PDZ/DHR/GLGF domain protein; KEGG: nha:Nham_3491 PDZ/DHR/GLGF; PDZ/DHR/GLGF domain-containing protein complement(5442525..5443490) Rhodopseudomonas palustris TIE-1 6412753 YP_001994024.1 CDS Rpal_5060 NC_011004.1 5443610 5444605 R PFAM: conserved hypothetical protein; KEGG: bja:blr7786 hypothetical protein; hypothetical protein complement(5443610..5444605) Rhodopseudomonas palustris TIE-1 6412754 YP_001994025.1 CDS Rpal_5061 NC_011004.1 5444863 5446119 D KEGG: bja:blr4975 hypothetical protein; hypothetical protein 5444863..5446119 Rhodopseudomonas palustris TIE-1 6412755 YP_001994026.1 CDS Rpal_5062 NC_011004.1 5446150 5447133 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mrd:Mrad2831_0040 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 5446150..5447133 Rhodopseudomonas palustris TIE-1 6412756 YP_001994027.1 CDS Rpal_5063 NC_011004.1 5447361 5448278 D KEGG: bja:blr7577 UDP-hexose transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase 5447361..5448278 Rhodopseudomonas palustris TIE-1 6412757 YP_001994028.1 CDS Rpal_5064 NC_011004.1 5448294 5449430 R PFAM: glycoside hydrolase family 5; KEGG: rca:Rcas_0182 glycoside hydrolase family 5; glycoside hydrolase family protein complement(5448294..5449430) Rhodopseudomonas palustris TIE-1 6412758 YP_001994029.1 CDS Rpal_5065 NC_011004.1 5449446 5451602 R PFAM: lipopolysaccharide biosynthesis protein; KEGG: bja:blr3362 hypothetical protein; lipopolysaccharide biosynthesis protein complement(5449446..5451602) Rhodopseudomonas palustris TIE-1 6412759 YP_001994030.1 CDS Rpal_5066 NC_011004.1 5451978 5453105 D PFAM: glycosyl transferase group 1; KEGG: bja:bll3361 probable glycosyl transferase; group 1 glycosyl transferase 5451978..5453105 Rhodopseudomonas palustris TIE-1 6412760 YP_001994031.1 CDS Rpal_5067 NC_011004.1 5453127 5454656 D KEGG: bja:bll3360 hypothetical protein; hypothetical protein 5453127..5454656 Rhodopseudomonas palustris TIE-1 6412761 YP_001994032.1 CDS Rpal_5068 NC_011004.1 5454674 5455039 R KEGG: bcs:BCAN_A1201 hypothetical protein; hypothetical protein complement(5454674..5455039) Rhodopseudomonas palustris TIE-1 6412762 YP_001994033.1 CDS Rpal_5069 NC_011004.1 5455182 5456651 D KEGG: bja:bll3363 hypothetical protein; hypothetical protein 5455182..5456651 Rhodopseudomonas palustris TIE-1 6412763 YP_001994034.1 CDS Rpal_5070 NC_011004.1 5456720 5457721 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(5456720..5457721) Rhodopseudomonas palustris TIE-1 6412764 YP_001994035.1 CDS Rpal_5071 NC_011004.1 5457734 5459038 R KEGG: bja:bll0245 O-acetylhomoserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(5457734..5459038) Rhodopseudomonas palustris TIE-1 6412765 YP_001994036.1 CDS Rpal_5072 NC_011004.1 5459304 5461121 D activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization; long-chain-acyl-CoA synthetase 5459304..5461121 Rhodopseudomonas palustris TIE-1 6412766 YP_001994037.1 CDS Rpal_5073 NC_011004.1 5461136 5462059 D PFAM: aminotransferase class IV; KEGG: bja:bll0229 aminotransferase; aminotransferase 5461136..5462059 Rhodopseudomonas palustris TIE-1 6412767 YP_001994038.1 CDS Rpal_5074 NC_011004.1 5462025 5462909 R KEGG: bja:bll0956 hypothetical protein; hypothetical protein complement(5462025..5462909) Rhodopseudomonas palustris TIE-1 6412768 YP_001994039.1 CDS Rpal_5075 NC_011004.1 5463010 5463255 D KEGG: bra:BRADO6292 conserved hypothetical protein; acyl carrier domain; hypothetical protein 5463010..5463255 Rhodopseudomonas palustris TIE-1 6412769 YP_001994040.1 CDS Rpal_5076 NC_011004.1 5463242 5464621 D PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll7783 hypothetical protein; AMP-dependent synthetase and ligase 5463242..5464621 Rhodopseudomonas palustris TIE-1 6412770 YP_001994041.1 CDS Rpal_5077 NC_011004.1 5464614 5465345 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll7782 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR 5464614..5465345 Rhodopseudomonas palustris TIE-1 6412771 YP_001994042.1 CDS Rpal_5078 NC_011004.1 5465579 5466520 R PFAM: tRNA synthetase class II (G H P and S); KEGG: bja:bll0957 hypothetical protein; hypothetical protein complement(5465579..5466520) Rhodopseudomonas palustris TIE-1 6412772 YP_001994043.1 CDS Rpal_5079 NC_011004.1 5466555 5467784 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bra:BRADO6906 acyl-CoA dehydrogenase; Acyl-CoA dehydrogenase type 2 domain complement(5466555..5467784) Rhodopseudomonas palustris TIE-1 6412773 YP_001994044.1 CDS Rpal_5080 NC_011004.1 5468151 5468423 D KEGG: bja:bsr0959 hypothetical protein; hypothetical protein 5468151..5468423 Rhodopseudomonas palustris TIE-1 6412774 YP_001994045.1 CDS Rpal_5081 NC_011004.1 5468497 5468952 D PFAM: protein of unknown function DUF861 cupin_3; KEGG: bra:BRADO0883 conserved hypothetical protein; RmlC-like cupin family protein; hypothetical protein 5468497..5468952 Rhodopseudomonas palustris TIE-1 6412775 YP_001994046.1 CDS Rpal_5082 NC_011004.1 5469129 5469716 D KEGG: sit:TM1040_2053 3-dehydroquinate dehydratase; 3-dehydroquinate dehydratase 5469129..5469716 Rhodopseudomonas palustris TIE-1 6412776 YP_001994047.1 CDS Rpal_5083 NC_011004.1 5470069 5470365 R KEGG: bra:BRADO5383 ferredoxin protein, FixX; ferredoxin protein, FixX complement(5470069..5470365) Rhodopseudomonas palustris TIE-1 6412777 YP_001994048.1 CDS Rpal_5084 NC_011004.1 5470399 5471706 R PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: bbt:BBta_5870 FixC protein; electron-transferring-flavoprotein dehydrogenase complement(5470399..5471706) Rhodopseudomonas palustris TIE-1 6412778 YP_001994049.1 CDS Rpal_5085 NC_011004.1 5471719 5472825 R PFAM: electron transfer flavoprotein alpha/beta-subunit ; electron transfer flavoprotein alpha subunit; KEGG: bra:BRADO5385 protein FixB; electron transfer flavoprotein alpha chain; electron transfer flavoprotein alpha/beta-subunit complement(5471719..5472825) Rhodopseudomonas palustris TIE-1 6412779 YP_001994050.1 CDS Rpal_5086 NC_011004.1 5472850 5473695 R PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: bbt:BBta_5872 protein FixA; electron transfer flavoprotein alpha/beta-subunit complement(5472850..5473695) Rhodopseudomonas palustris TIE-1 6412780 YP_001994051.1 CDS nifW NC_011004.1 5474028 5474378 R associates with NifD and may protect the nitrogenase Fe-Mo protein from oxidative damage; nitrogenase stabilizing/protective protein complement(5474028..5474378) Rhodopseudomonas palustris TIE-1 6412781 YP_001994052.1 CDS Rpal_5088 NC_011004.1 5474407 5475600 R TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: bra:BRADO5390 homocitrate synthase; homocitrate synthase complement(5474407..5475600) Rhodopseudomonas palustris TIE-1 6412782 YP_001994053.1 CDS Rpal_5089 NC_011004.1 5475593 5476825 R TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gdi:GDI0448 cysteine desulfurase (nitrogenase metalloclusters biosynthesis protein NifS); cysteine desulfurase NifS complement(5475593..5476825) Rhodopseudomonas palustris TIE-1 6412783 YP_001994054.1 CDS Rpal_5090 NC_011004.1 5476822 5477808 R TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: gdi:GDI0447 nitrogen fixation protein NifU; Fe-S cluster assembly protein NifU complement(5476822..5477808) Rhodopseudomonas palustris TIE-1 6412784 YP_001994055.1 CDS Rpal_5091 NC_011004.1 5477836 5478156 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: mlo:mll5942 hypothetical protein; iron-sulfur cluster assembly accessory protein complement(5477836..5478156) Rhodopseudomonas palustris TIE-1 6412785 YP_001994056.1 CDS Rpal_5092 NC_011004.1 5478438 5479148 R PFAM: NifQ family protein; KEGG: bra:BRADO5393 nitrogen fixation protein NifQ; NifQ family protein complement(5478438..5479148) Rhodopseudomonas palustris TIE-1 6412786 YP_001994057.1 CDS Rpal_5093 NC_011004.1 5479166 5479477 R TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azc:AZC_1034 ferredoxin; ferredoxin III complement(5479166..5479477) Rhodopseudomonas palustris TIE-1 6412787 YP_001994058.1 CDS Rpal_5094 NC_011004.1 5479538 5479744 R PFAM: protein of unknown function DUF683; KEGG: azc:AZC_3451 hypothetical 7.7 kDa protein in FixX 3'region; hypothetical protein complement(5479538..5479744) Rhodopseudomonas palustris TIE-1 6412788 YP_001994059.1 CDS Rpal_5095 NC_011004.1 5479763 5480227 R TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269; KEGG: mca:MCA0236 hypothetical protein; nitrogen fixation protein complement(5479763..5480227) Rhodopseudomonas palustris TIE-1 6412789 YP_001994060.1 CDS Rpal_5096 NC_011004.1 5480229 5480627 R TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: azc:AZC_1036 nitrogenase molybdenum-iron NifX protein; nitrogen fixation protein NifX complement(5480229..5480627) Rhodopseudomonas palustris TIE-1 6412790 YP_001994061.1 CDS Rpal_5097 NC_011004.1 5480683 5482056 R functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifN complement(5480683..5482056) Rhodopseudomonas palustris TIE-1 6412791 YP_001994062.1 CDS Rpal_5098 NC_011004.1 5482067 5483530 R functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifE complement(5482067..5483530) Rhodopseudomonas palustris TIE-1 6412792 YP_001994063.1 CDS Rpal_5099 NC_011004.1 5483570 5485129 R KEGG: azc:AZC_1039 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit beta complement(5483570..5485129) Rhodopseudomonas palustris TIE-1 6412793 YP_001994064.1 CDS Rpal_5100 NC_011004.1 5485218 5486681 R KEGG: mca:MCA0230 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit alpha complement(5485218..5486681) Rhodopseudomonas palustris TIE-1 6412794 YP_001994065.1 CDS nifH NC_011004.1 5486753 5487649 R nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; nitrogenase reductase complement(5486753..5487649) Rhodopseudomonas palustris TIE-1 6412795 YP_001994066.1 CDS Rpal_5102 NC_011004.1 5488226 5489128 R KEGG: mca:MCA0218 hypothetical protein; hypothetical protein complement(5488226..5489128) Rhodopseudomonas palustris TIE-1 6412796 YP_001994067.1 CDS Rpal_5103 NC_011004.1 5489144 5489422 R KEGG: azc:AZC_3422 hypothetical protein; hypothetical protein complement(5489144..5489422) Rhodopseudomonas palustris TIE-1 6412797 YP_001994068.1 CDS Rpal_5104 NC_011004.1 5489425 5489625 R TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: bxe:Bxe_B1454 nitrogen fixation protein; nitrogen fixation protein FixT complement(5489425..5489625) Rhodopseudomonas palustris TIE-1 6412798 YP_001994069.1 CDS Rpal_5105 NC_011004.1 5489663 5489896 R PFAM: NifZ family protein; KEGG: xau:Xaut_0117 NifZ family protein; NifZ family protein complement(5489663..5489896) Rhodopseudomonas palustris TIE-1 6412799 YP_001994070.1 CDS Rpal_5106 NC_011004.1 5489896 5490195 R PFAM: NifZ family protein; KEGG: azc:AZC_3419 iron-sulfur cofactor synthesis protein; NifZ family protein complement(5489896..5490195) Rhodopseudomonas palustris TIE-1 6412800 YP_001994071.1 CDS Rpal_5107 NC_011004.1 5490192 5490977 R PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: azc:AZC_3418 hypothetical protein; LRV FeS4 cluster domain-containing protein complement(5490192..5490977) Rhodopseudomonas palustris TIE-1 6412801 YP_001994072.1 CDS Rpal_5108 NC_011004.1 5490967 5491506 R PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: xau:Xaut_0114 hypothetical protein; hypothetical protein complement(5490967..5491506) Rhodopseudomonas palustris TIE-1 6412802 YP_001994073.1 CDS Rpal_5109 NC_011004.1 5491510 5491866 R PFAM: HesB/YadR/YfhF-family protein; KEGG: mca:MCA0206 HesB/YadR/YfhF family protein; HesB/YadR/YfhF-family protein complement(5491510..5491866) Rhodopseudomonas palustris TIE-1 6412803 YP_001994074.1 CDS Rpal_5110 NC_011004.1 5491877 5492098 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bbt:BBta_5903 ferredoxin-like (in nif region); 4Fe-4S ferredoxin complement(5491877..5492098) Rhodopseudomonas palustris TIE-1 6412804 YP_001994075.1 CDS Rpal_5111 NC_011004.1 5492122 5493678 R TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; radical SAM domain protein; KEGG: mca:MCA0204 nitrogenase cofactor biosynthesis protein NifB; nitrogenase cofactor biosynthesis protein NifB complement(5492122..5493678) Rhodopseudomonas palustris TIE-1 6412805 YP_001994076.1 CDS Rpal_5112 NC_011004.1 5493837 5494031 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gdi:GDI0431 ferredoxin-like; 4Fe-4S ferredoxin complement(5493837..5494031) Rhodopseudomonas palustris TIE-1 6412806 YP_001994077.1 CDS Rpal_5113 NC_011004.1 5494304 5496058 R KEGG: bbt:BBta_5933 Mo/Fe nitrogenase specific transcriptional regulator, NifA; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase AAA; SMART: ATPase AAA; Fis family transcriptional regulator complement(5494304..5496058) Rhodopseudomonas palustris TIE-1 6412807 YP_001994078.1 CDS Rpal_5114 NC_011004.1 5496371 5497192 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_5935 FixR protein; short-chain dehydrogenase/reductase SDR complement(5496371..5497192) Rhodopseudomonas palustris TIE-1 6412808 YP_001994079.1 CDS Rpal_5115 NC_011004.1 5497524 5498378 D KEGG: bbt:BBta_5936 hypothetical protein; hypothetical protein 5497524..5498378 Rhodopseudomonas palustris TIE-1 6412809 YP_001994080.1 CDS Rpal_5116 NC_011004.1 5498526 5500406 R TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: bja:blr6523 iron transport protein; ferrous iron transport protein B complement(5498526..5500406) Rhodopseudomonas palustris TIE-1 6412810 YP_001994081.1 CDS Rpal_5117 NC_011004.1 5500444 5500734 R PFAM: FeoA family protein; KEGG: bra:BRADO5587 FeoA family protein; FeoA family protein complement(5500444..5500734) Rhodopseudomonas palustris TIE-1 6412811 YP_001994082.1 CDS Rpal_5118 NC_011004.1 5501096 5501257 D hypothetical protein 5501096..5501257 Rhodopseudomonas palustris TIE-1 6412812 YP_001994083.1 CDS Rpal_5119 NC_011004.1 5501428 5503119 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_2902 sensory transducer protein; methyl-accepting chemotaxis sensory transducer complement(5501428..5503119) Rhodopseudomonas palustris TIE-1 6412813 YP_001994084.1 CDS Rpal_5120 NC_011004.1 5503504 5505195 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:blr2931 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(5503504..5505195) Rhodopseudomonas palustris TIE-1 6412814 YP_001994085.1 CDS Rpal_5121 NC_011004.1 5505401 5505787 R hypothetical protein complement(5505401..5505787) Rhodopseudomonas palustris TIE-1 6412815 YP_001994086.1 CDS Rpal_5122 NC_011004.1 5506084 5507469 R catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation; ribulose bisphosphate carboxylase complement(5506084..5507469) Rhodopseudomonas palustris TIE-1 6412816 YP_001994087.1 CDS Rpal_5123 NC_011004.1 5507528 5508613 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(5507528..5508613) Rhodopseudomonas palustris TIE-1 6412817 YP_001994088.1 CDS Rpal_5124 NC_011004.1 5508675 5510690 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(5508675..5510690) Rhodopseudomonas palustris TIE-1 6412818 YP_001994089.1 CDS Rpal_5125 NC_011004.1 5510725 5511600 R PFAM: phosphoribulokinase/uridine kinase; KEGG: bbt:BBta_6400 phosphoribulokinase; phosphoribulokinase complement(5510725..5511600) Rhodopseudomonas palustris TIE-1 6412819 YP_001994090.1 CDS Rpal_5126 NC_011004.1 5511638 5512669 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(5511638..5512669) Rhodopseudomonas palustris TIE-1 6412820 YP_001994091.1 CDS Rpal_5127 NC_011004.1 5513141 5513890 D PFAM: alpha/beta hydrolase fold; KEGG: sth:STH2045 esterase; alpha/beta hydrolase fold protein 5513141..5513890 Rhodopseudomonas palustris TIE-1 6412821 YP_001994092.1 CDS Rpal_5128 NC_011004.1 5514019 5514774 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pde:Pden_4604 regulatory proteins, IclR; IclR family transcriptional regulator complement(5514019..5514774) Rhodopseudomonas palustris TIE-1 6412822 YP_001994093.1 CDS Rpal_5129 NC_011004.1 5514855 5515943 R PFAM: extracellular solute-binding protein family 1; KEGG: pde:Pden_4603 ABC transporter binding protein component; family 1 extracellular solute-binding protein complement(5514855..5515943) Rhodopseudomonas palustris TIE-1 6412823 YP_001994094.1 CDS Rpal_5130 NC_011004.1 5515977 5517767 R PFAM: ABC transporter inner membrane protein; KEGG: pde:Pden_4602 ABC transporter inner membrane protein; ABC transporter inner membrane protein complement(5515977..5517767) Rhodopseudomonas palustris TIE-1 6412824 YP_001994095.1 CDS Rpal_5131 NC_011004.1 5517764 5518909 R KEGG: pde:Pden_4601 ABC transporter; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; Transport-associated OB domain protein; SMART: ATPase AAA; spermidine/putrescine ABC transporter ATPase complement(5517764..5518909) Rhodopseudomonas palustris TIE-1 6412825 YP_001994096.1 CDS Rpal_5132 NC_011004.1 5519165 5519971 D PFAM: coenzyme A transferase; KEGG: pde:Pden_4600 glutaconate CoA-transferase, subunit A; coenzyme A transferase 5519165..5519971 Rhodopseudomonas palustris TIE-1 6412826 YP_001994097.1 CDS Rpal_5133 NC_011004.1 5519971 5520738 D PFAM: coenzyme A transferase; KEGG: pde:Pden_4599 CoA transferase, subunit B; coenzyme A transferase 5519971..5520738 Rhodopseudomonas palustris TIE-1 6412827 YP_001994098.1 CDS Rpal_5135 NC_011004.1 5523095 5523664 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: carboxymuconolactone decarboxylase; KEGG: bra:BRADO4672 conserved hypothetical protein; peroxidase related protein; peroxidase-like protein 5523095..5523664 Rhodopseudomonas palustris TIE-1 6412829 YP_001994099.1 CDS Rpal_5136 NC_011004.1 5523746 5524432 D PFAM: class II aldolase/adducin family protein; KEGG: bja:bll6170 L-fuculose phosphate aldolase; L-fuculose phosphate aldolase 5523746..5524432 Rhodopseudomonas palustris TIE-1 6412830 YP_001994100.1 CDS Rpal_5137 NC_011004.1 5524463 5525422 D PFAM: PfkB domain protein; KEGG: rsp:RSP_2370 sugar kinase; PfkB domain-containing protein 5524463..5525422 Rhodopseudomonas palustris TIE-1 6412831 YP_001994101.1 CDS Rpal_5138 NC_011004.1 5525469 5526215 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: smd:Smed_3033 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 5525469..5526215 Rhodopseudomonas palustris TIE-1 6412832 YP_001994102.1 CDS Rpal_5139 NC_011004.1 5526248 5527234 D TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: nha:Nham_3502 alcohol dehydrogenase GroES-like; YhdH/YhfP family quinone oxidoreductase 5526248..5527234 Rhodopseudomonas palustris TIE-1 6412833 YP_001994103.1 CDS Rpal_5140 NC_011004.1 5527311 5527814 D PFAM: GCN5-related N-acetyltransferase; KEGG: scl:sce5163 acetyltransferase; N-acetyltransferase GCN5 5527311..5527814 Rhodopseudomonas palustris TIE-1 6412834 YP_001994104.1 CDS Rpal_5141 NC_011004.1 5534515 5535999 R KEGG: nha:Nham_3615 alpha,alpha-trehalose-phosphate synthase; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20; alpha,alpha-trehalose-phosphate synthase complement(5534515..5535999) Rhodopseudomonas palustris TIE-1 6412841 YP_001994105.1 CDS Rpal_5142 NC_011004.1 5536156 5536953 R KEGG: bja:bll0323 probable trehalose-phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; HAD family hydrolase complement(5536156..5536953) Rhodopseudomonas palustris TIE-1 6412842 YP_001994106.1 CDS Rpal_5143 NC_011004.1 5536950 5538437 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:bll0324 sugar transport protein; major facilitator superfamily protein complement(5536950..5538437) Rhodopseudomonas palustris TIE-1 6412843 YP_001994107.1 CDS Rpal_5144 NC_011004.1 5538619 5540679 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:bll0327 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(5538619..5540679) Rhodopseudomonas palustris TIE-1 6412844 YP_001994108.1 CDS Rpal_5145 NC_011004.1 5540780 5541526 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; cupin; KEGG: rru:Rru_A1462 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(5540780..5541526) Rhodopseudomonas palustris TIE-1 6412845 YP_001994109.1 CDS Rpal_5146 NC_011004.1 5541865 5543526 D KEGG: rru:Rru_A1461 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase 5541865..5543526 Rhodopseudomonas palustris TIE-1 6412846 YP_001994110.1 CDS Rpal_5147 NC_011004.1 5543831 5544316 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bra:BRADO6957 carbon-monoxide dehydrogenase small subunit, CoxS-like protein; (2Fe-2S)-binding domain-containing protein 5543831..5544316 Rhodopseudomonas palustris TIE-1 6412847 YP_001994111.1 CDS Rpal_5148 NC_011004.1 5544427 5546781 D PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bbt:BBta_0573 carbon-monoxide dehydrogenase large subunit, CoxL-like protein; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 5544427..5546781 Rhodopseudomonas palustris TIE-1 6412848 YP_001994112.1 CDS Rpal_5149 NC_011004.1 5546890 5547690 D PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: bra:BRADO6959 carbon monoxide dehydrogenase medium subunit, CoxM-like protein; carbon monoxide dehydrogenase 5546890..5547690 Rhodopseudomonas palustris TIE-1 6412849 YP_001994113.1 CDS Rpal_5150 NC_011004.1 5547875 5548990 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr0338 alpha-methylacyl-CoA racemase; L-carnitine dehydratase/bile acid-inducible protein F 5547875..5548990 Rhodopseudomonas palustris TIE-1 6412850 YP_001994114.1 CDS Rpal_5151 NC_011004.1 5549115 5550383 R KEGG: bbt:BBta_0567 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; fumarylacetoacetase complement(5549115..5550383) Rhodopseudomonas palustris TIE-1 6412851 YP_001994115.1 CDS Rpal_5152 NC_011004.1 5550676 5551332 R TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase domain; KEGG: nha:Nham_0920 maleylacetoacetate isomerase; maleylacetoacetate isomerase complement(5550676..5551332) Rhodopseudomonas palustris TIE-1 6412852 YP_001994116.1 CDS Rpal_5153 NC_011004.1 5551329 5552675 R An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase complement(5551329..5552675) Rhodopseudomonas palustris TIE-1 6412853 YP_001994117.1 CDS Rpal_5154 NC_011004.1 5552732 5553685 R PFAM: beta-lactamase domain protein; KEGG: bra:BRADO6967 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein complement(5552732..5553685) Rhodopseudomonas palustris TIE-1 6412854 YP_001994118.1 CDS Rpal_5155 NC_011004.1 5553912 5554130 R KEGG: nha:Nham_0923 hypothetical protein; hypothetical protein complement(5553912..5554130) Rhodopseudomonas palustris TIE-1 6412855 YP_001994119.1 CDS Rpal_5156 NC_011004.1 5554420 5556027 R PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: nha:Nham_0924 hypothetical protein; FAD-dependent oxidoreductase complement(5554420..5556027) Rhodopseudomonas palustris TIE-1 6412856 YP_001994120.1 CDS Rpal_5157 NC_011004.1 5556154 5556651 D PFAM: regulatory protein MarR; KEGG: bra:BRADO6970 transcriptional regulator, MarR family; MarR family transcriptional regulator 5556154..5556651 Rhodopseudomonas palustris TIE-1 6412857 YP_001994121.1 CDS Rpal_5158 NC_011004.1 5556822 5558246 D PFAM: TPR repeat-containing protein; peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nwi:Nwi_3029 peptidase C14; peptidase C14 caspase catalytic subunit p20 5556822..5558246 Rhodopseudomonas palustris TIE-1 6412858 YP_001994122.1 CDS Rpal_5159 NC_011004.1 5558351 5559001 D PFAM: OmpA/MotB domain protein; KEGG: bbt:BBta_0555 hypothetical protein; OmpA/MotB domain-containing protein 5558351..5559001 Rhodopseudomonas palustris TIE-1 6412859 YP_001994123.1 CDS Rpal_5160 NC_011004.1 5559160 5560047 D KEGG: nha:Nham_3611 secretion protein HlyD; secretion protein HlyD 5559160..5560047 Rhodopseudomonas palustris TIE-1 6412860 YP_001994124.1 CDS Rpal_5161 NC_011004.1 5560047 5563199 D PFAM: acriflavin resistance protein; KEGG: nha:Nham_3610 acriflavin resistance protein; acriflavin resistance protein 5560047..5563199 Rhodopseudomonas palustris TIE-1 6412861 YP_001994125.1 CDS Rpal_5162 NC_011004.1 5563241 5565049 D PFAM: AsmA family protein; KEGG: bja:blr0358 hypothetical protein; AsmA family protein 5563241..5565049 Rhodopseudomonas palustris TIE-1 6412862 YP_001994126.1 CDS Rpal_5163 NC_011004.1 5565131 5566027 D TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: bbt:BBta_0549 exported protein of unknown function; RND family efflux transporter MFP subunit 5565131..5566027 Rhodopseudomonas palustris TIE-1 6412863 YP_001994127.1 CDS Rpal_5164 NC_011004.1 5566089 5566343 R KEGG: ppu:PP_1576 immunity protein; hypothetical protein complement(5566089..5566343) Rhodopseudomonas palustris TIE-1 6412864 YP_001994128.1 CDS Rpal_5165 NC_011004.1 5566901 5568580 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mag:amb3991 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 5566901..5568580 Rhodopseudomonas palustris TIE-1 6412865 YP_001994129.1 CDS lysK NC_011004.1 5568622 5570259 R class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase complement(5568622..5570259) Rhodopseudomonas palustris TIE-1 6412866 YP_001994130.1 CDS Rpal_5167 NC_011004.1 5570293 5571249 R PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: nha:Nham_0202 extracellular solute-binding protein, family 3; family 3 extracellular solute-binding protein complement(5570293..5571249) Rhodopseudomonas palustris TIE-1 6412867 YP_001994131.1 CDS Rpal_5168 NC_011004.1 5571290 5573341 D PFAM: glycosyl transferase family 2; KEGG: azc:AZC_0377 glycosyltransferase; family 2 glycosyl transferase 5571290..5573341 Rhodopseudomonas palustris TIE-1 6412868 YP_001994132.1 CDS Rpal_5169 NC_011004.1 5573343 5573942 R PFAM: electron transport protein SCO1/SenC; KEGG: bbt:BBta_0787 electron transport protein; electron transport protein SCO1/SenC complement(5573343..5573942) Rhodopseudomonas palustris TIE-1 6412869 YP_001994133.1 CDS Rpal_5170 NC_011004.1 5574118 5574576 R KEGG: bja:blr1130 hypothetical protein; hypothetical protein complement(5574118..5574576) Rhodopseudomonas palustris TIE-1 6412870 YP_001994134.1 CDS Rpal_5171 NC_011004.1 5574789 5575127 D hypothetical protein 5574789..5575127 Rhodopseudomonas palustris TIE-1 6412871 YP_001994135.1 CDS Rpal_5172 NC_011004.1 5575300 5577270 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_1388 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 5575300..5577270 Rhodopseudomonas palustris TIE-1 6412872 YP_001994136.1 CDS Rpal_5173 NC_011004.1 5577419 5577796 D KEGG: bja:bll4535 hypothetical protein; hypothetical protein 5577419..5577796 Rhodopseudomonas palustris TIE-1 6412873 YP_001994137.1 CDS Rpal_5174 NC_011004.1 5577987 5579150 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bpa:BPP0371 NADH:flavin oxidoreductase / NADH oxidase family protein; NADH:flavin oxidoreductase complement(5577987..5579150) Rhodopseudomonas palustris TIE-1 6412874 YP_001994138.1 CDS Rpal_5175 NC_011004.1 5579317 5580315 D PFAM: conserved hypothetical protein; KEGG: azc:AZC_3350 hypothetical protein; hypothetical protein 5579317..5580315 Rhodopseudomonas palustris TIE-1 6412875 YP_001994139.1 CDS Rpal_5176 NC_011004.1 5580337 5581239 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bra:BRADO2335 transcriptional regulator of protochatechuate degradation (LysR family); LysR family transcriptional regulator 5580337..5581239 Rhodopseudomonas palustris TIE-1 6412876 YP_001994140.1 CDS Rpal_5177 NC_011004.1 5581366 5582484 D PFAM: protein of unknown function DUF453; KEGG: azo:azo2544 hypothetical protein; hypothetical protein 5581366..5582484 Rhodopseudomonas palustris TIE-1 6412877 YP_001994141.1 CDS Rpal_5178 NC_011004.1 5582692 5583720 D PFAM: amidohydrolase 2; KEGG: bra:BRADO2337 4-oxalomesaconate hydratase; amidohydrolase 2 5582692..5583720 Rhodopseudomonas palustris TIE-1 6412878 YP_001994142.1 CDS Rpal_5179 NC_011004.1 5583723 5584418 D TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: mag:amb0252 hypothetical protein; hypothetical protein 5583723..5584418 Rhodopseudomonas palustris TIE-1 6412879 YP_001994143.1 CDS Rpal_5180 NC_011004.1 5584418 5585347 D PFAM: phosphogluconate dehydrogenase, NAD-binding, -like; KEGG: bra:BRADO2339 dehydrogenase, with NAD binding domain; phosphogluconate dehydrogenase-like protein 5584418..5585347 Rhodopseudomonas palustris TIE-1 6412880 YP_001994144.1 CDS Rpal_5181 NC_011004.1 5585596 5586510 D PFAM: amidohydrolase 2; KEGG: bbt:BBta_2700 2-pyrone-4,6-dicarboxylic acid hydrolase; amidohydrolase 2 5585596..5586510 Rhodopseudomonas palustris TIE-1 6412881 YP_001994145.1 CDS Rpal_5182 NC_011004.1 5586616 5587005 D extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha 5586616..5587005 Rhodopseudomonas palustris TIE-1 6412882 YP_001994146.1 CDS Rpal_5183 NC_011004.1 5587005 5587859 D extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta 5587005..5587859 Rhodopseudomonas palustris TIE-1 6412883 YP_001994147.1 CDS Rpal_5184 NC_011004.1 5587861 5588820 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bra:BRADO2343 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; oxidoreductase domain-containing protein 5587861..5588820 Rhodopseudomonas palustris TIE-1 6412884 YP_001994148.1 CDS Rpal_5185 NC_011004.1 5589013 5589411 D KEGG: nha:Nham_3738 hypothetical protein; hypothetical protein 5589013..5589411 Rhodopseudomonas palustris TIE-1 6412885 YP_001994149.1 CDS Rpal_5186 NC_011004.1 5589517 5589912 D TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: bja:blr1323 phosphoribosyl-ATP pyrophosphohydrolase; phosphoribosyl-ATP diphosphatase 5589517..5589912 Rhodopseudomonas palustris TIE-1 6412886 YP_001994150.1 CDS Rpal_5187 NC_011004.1 5590014 5590595 D KEGG: nha:Nham_3739 DedA; DedA integral membrane protein 5590014..5590595 Rhodopseudomonas palustris TIE-1 6412887 YP_001994151.1 CDS Rpal_5188 NC_011004.1 5590648 5591319 D KEGG: bbt:BBta_0959 exported protein of unknown function; hypothetical protein 5590648..5591319 Rhodopseudomonas palustris TIE-1 6412888 YP_001994152.1 CDS Rpal_5189 NC_011004.1 5591465 5592433 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: bbt:BBta_0960 dioxygenase; 2-nitropropane dioxygenase 5591465..5592433 Rhodopseudomonas palustris TIE-1 6412889 YP_001994153.1 CDS Rpal_5190 NC_011004.1 5592590 5593363 D KEGG: bja:blr1328 hypothetical protein; hypothetical protein 5592590..5593363 Rhodopseudomonas palustris TIE-1 6412890 YP_001994154.1 CDS Rpal_5191 NC_011004.1 5593553 5593807 D KEGG: bbt:BBta_0975 hypothetical protein; hypothetical protein 5593553..5593807 Rhodopseudomonas palustris TIE-1 6412891 YP_001994155.1 CDS Rpal_5192 NC_011004.1 5593933 5594661 D KEGG: bbt:BBta_0976 exported protein of unknown function; hypothetical protein 5593933..5594661 Rhodopseudomonas palustris TIE-1 6412892 YP_001994156.1 CDS Rpal_5193 NC_011004.1 5594715 5596463 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nar:Saro_3797 transcriptional regulator, SARP family; hypothetical protein complement(5594715..5596463) Rhodopseudomonas palustris TIE-1 6412893 YP_001994157.1 CDS Rpal_5194 NC_011004.1 5596708 5597679 D KEGG: mar:MAE_00590 peptidase PatA homolog; peptidase PatA-like protein 5596708..5597679 Rhodopseudomonas palustris TIE-1 6412894 YP_001994158.1 CDS Rpal_5195 NC_011004.1 5597652 5598242 R KEGG: bbt:BBta_2076 hypothetical protein; hypothetical protein complement(5597652..5598242) Rhodopseudomonas palustris TIE-1 6412895 YP_001994159.1 CDS Rpal_5196 NC_011004.1 5598390 5599511 R KEGG: bja:blr6953 molybdenum ABC transporter ATP-binding protein; TIGRFAM: molybdate ABC transporter ATPase subunit; PFAM: ABC transporter; TOBE domain protein; SMART: ATPase AAA; molybdate ABC transporter ATPase complement(5598390..5599511) Rhodopseudomonas palustris TIE-1 6412896 YP_001994160.1 CDS Rpal_5197 NC_011004.1 5599508 5600194 R TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: bbt:BBta_2079 molybdenum ABC transporter (permease protein); molybdate ABC transporter inner membrane subunit complement(5599508..5600194) Rhodopseudomonas palustris TIE-1 6412897 YP_001994161.1 CDS Rpal_5198 NC_011004.1 5600440 5601213 R TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bja:blr6951 molybdenum ABC transporter molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(5600440..5601213) Rhodopseudomonas palustris TIE-1 6412898 YP_001994162.1 CDS Rpal_5199 NC_011004.1 5601358 5602149 R TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: nha:Nham_2953 transcriptional regulator, ModE family; ModE family transcriptional regulator complement(5601358..5602149) Rhodopseudomonas palustris TIE-1 6412899 YP_001994163.1 CDS Rpal_5200 NC_011004.1 5602248 5602457 D PFAM: TOBE domain protein; KEGG: mlo:msr1466 molybdo-pterin binding protein; TOBE domain-containing protein 5602248..5602457 Rhodopseudomonas palustris TIE-1 6412900 YP_001994164.1 CDS Rpal_5201 NC_011004.1 5602502 5603071 R KEGG: nha:Nham_3410 hypothetical protein; hypothetical protein complement(5602502..5603071) Rhodopseudomonas palustris TIE-1 6412901 YP_001994165.1 CDS Rpal_5202 NC_011004.1 5603554 5608542 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rfr:Rfer_3209 pyruvate flavodoxin/ferredoxin oxidoreductase-like; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 5603554..5608542 Rhodopseudomonas palustris TIE-1 6412902 YP_001994166.1 CDS Rpal_5203 NC_011004.1 5608539 5611373 D undetermined function; bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase 5608539..5611373 Rhodopseudomonas palustris TIE-1 6412903 YP_001994167.1 CDS Rpal_5204 NC_011004.1 5611612 5614689 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 5611612..5614689 Rhodopseudomonas palustris TIE-1 6412904 YP_001994168.1 CDS pyrE NC_011004.1 5615008 5615571 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 5615008..5615571 Rhodopseudomonas palustris TIE-1 6412905 YP_001994169.1 CDS Rpal_5206 NC_011004.1 5615731 5616477 D KEGG: bja:blr8135 hypothetical protein; hypothetical protein 5615731..5616477 Rhodopseudomonas palustris TIE-1 6412906 YP_001994170.1 CDS Rpal_5207 NC_011004.1 5616751 5617182 R KEGG: bja:bll8136 hypothetical protein; hypothetical protein complement(5616751..5617182) Rhodopseudomonas palustris TIE-1 6412907 YP_001994171.1 CDS Rpal_5208 NC_011004.1 5617466 5620012 D KEGG: bbt:BBta_7363 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 5617466..5620012 Rhodopseudomonas palustris TIE-1 6412908 YP_001994172.1 CDS Rpal_5209 NC_011004.1 5620293 5621126 D KEGG: bja:blr8140 hypothetical protein; hypothetical protein 5620293..5621126 Rhodopseudomonas palustris TIE-1 6412909 YP_001994173.1 CDS Rpal_5210 NC_011004.1 5621182 5622165 D TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: nwi:Nwi_0352 arginase; arginase 5621182..5622165 Rhodopseudomonas palustris TIE-1 6412910 YP_001994174.1 CDS Rpal_5211 NC_011004.1 5622436 5623395 D PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: cak:Caul_4355 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 5622436..5623395 Rhodopseudomonas palustris TIE-1 6412911 YP_001994175.1 CDS Rpal_5212 NC_011004.1 5623522 5625141 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bra:BRADO3397 ABC transporter ATP-binding protein with duplicated ATPase domains; ABC transporter 5623522..5625141 Rhodopseudomonas palustris TIE-1 6412912 YP_001994176.1 CDS Rpal_5213 NC_011004.1 5625289 5626482 R KEGG: nha:Nham_0672 hypothetical protein; hypothetical protein complement(5625289..5626482) Rhodopseudomonas palustris TIE-1 6412913 YP_001994177.1 CDS Rpal_5214 NC_011004.1 5626643 5627221 D PFAM: ChaC family protein; AIG2 family protein; KEGG: bbt:BBta_1180 cation transport protein ChaC-related; ChaC family protein 5626643..5627221 Rhodopseudomonas palustris TIE-1 6412914 YP_001994178.1 CDS Rpal_5215 NC_011004.1 5627238 5628047 R PFAM: phospholipid/glycerol acyltransferase; KEGG: bbt:BBta_1179 1-acylglycerol-3-phosphate O-acyltransferase (PlsC); phospholipid/glycerol acyltransferase complement(5627238..5628047) Rhodopseudomonas palustris TIE-1 6412915 YP_001994179.1 CDS Rpal_5216 NC_011004.1 5628061 5628786 R PFAM: protein of unknown function DUF218; KEGG: nha:Nham_0669 protein of unknown function DUF218; hypothetical protein complement(5628061..5628786) Rhodopseudomonas palustris TIE-1 6412916 YP_001994180.1 CDS Rpal_5217 NC_011004.1 5628942 5629928 R PFAM: protein of unknown function DUF214; KEGG: bja:blr1391 cell division protein; hypothetical protein complement(5628942..5629928) Rhodopseudomonas palustris TIE-1 6412917 YP_001994181.1 CDS Rpal_5218 NC_011004.1 5629921 5630580 R KEGG: nha:Nham_0667 ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter; SMART: ATPase AAA; cell division ATP-binding protein FtsE complement(5629921..5630580) Rhodopseudomonas palustris TIE-1 6412918 YP_001994182.1 CDS Rpal_5219 NC_011004.1 5630724 5631620 D TIGRFAM: MJ0042 family finger-like protein; KEGG: nha:Nham_0666 zinc finger/thioredoxin; hypothetical protein 5630724..5631620 Rhodopseudomonas palustris TIE-1 6412919 YP_001994183.1 CDS Rpal_5220 NC_011004.1 5631680 5632060 D PFAM: response regulator receiver; KEGG: bja:bll1388 two-component response regulator; response regulator receiver protein 5631680..5632060 Rhodopseudomonas palustris TIE-1 6412920 YP_001994184.1 CDS Rpal_5221 NC_011004.1 5632259 5634811 R KEGG: nha:Nham_0664 hypothetical protein; hypothetical protein complement(5632259..5634811) Rhodopseudomonas palustris TIE-1 6412921 YP_001994185.1 CDS Rpal_5222 NC_011004.1 5634971 5635351 D PFAM: carboxymuconolactone decarboxylase; KEGG: bja:bll1385 gamma carboxymuconolactone decarboxylase protein; carboxymuconolactone decarboxylase 5634971..5635351 Rhodopseudomonas palustris TIE-1 6412922 YP_001994186.1 CDS Rpal_5223 NC_011004.1 5635587 5636852 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bbt:BBta_1147 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(5635587..5636852) Rhodopseudomonas palustris TIE-1 6412923 YP_001994187.1 CDS Rpal_5224 NC_011004.1 5636861 5637142 R KEGG: nwi:Nwi_0714 hypothetical protein; hypothetical protein complement(5636861..5637142) Rhodopseudomonas palustris TIE-1 6412924 YP_001994188.1 CDS Rpal_5225 NC_011004.1 5637197 5638594 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(5637197..5638594) Rhodopseudomonas palustris TIE-1 6412925 YP_001994189.1 CDS Rpal_5226 NC_011004.1 5638690 5639376 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bbt:BBta_1144 thiol disulfide interchange protein TlpA (cytochrome C biogenesis protein TlpA); redoxin domain-containing protein 5638690..5639376 Rhodopseudomonas palustris TIE-1 6412926 YP_001994190.1 CDS Rpal_5227 NC_011004.1 5639521 5639709 R KEGG: bbt:BBta_1143 exported protein of unknown function; hypothetical protein complement(5639521..5639709) Rhodopseudomonas palustris TIE-1 6412927 YP_001994191.1 CDS Rpal_5228 NC_011004.1 5639818 5640636 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: mlo:mll7814 quinone reductase; ribosyldihydronicotinamide dehydrogenase complement(5639818..5640636) Rhodopseudomonas palustris TIE-1 6412928 YP_001994192.1 CDS Rpal_5229 NC_011004.1 5640713 5641627 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mlo:mlr7815 transcriptional regulator; LysR family transcriptional regulator 5640713..5641627 Rhodopseudomonas palustris TIE-1 6412929 YP_001994193.1 CDS Rpal_5230 NC_011004.1 5641642 5642523 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(5641642..5642523) Rhodopseudomonas palustris TIE-1 6412930 YP_001994194.1 CDS Rpal_5231 NC_011004.1 5642689 5643633 R PFAM: electron transfer flavoprotein alpha/beta-subunit ; electron transfer flavoprotein alpha subunit; KEGG: bja:blr1378 electron transfer flavoprotein large subunit; electron transfer flavoprotein alpha subunit complement(5642689..5643633) Rhodopseudomonas palustris TIE-1 6412931 YP_001994195.1 CDS Rpal_5232 NC_011004.1 5643633 5644382 R PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: bja:blr1377 electron transfer flavoprotein beta subunit; electron transfer flavoprotein alpha/beta-subunit complement(5643633..5644382) Rhodopseudomonas palustris TIE-1 6412932 YP_001994196.1 CDS Rpal_5233 NC_011004.1 5644488 5645060 R TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: bja:blr1376 hypothetical protein; ATP/cobalamin adenosyltransferase complement(5644488..5645060) Rhodopseudomonas palustris TIE-1 6412933 YP_001994197.1 CDS Rpal_5234 NC_011004.1 5645113 5645307 R KEGG: bja:blr1375 hypothetical protein; hypothetical protein complement(5645113..5645307) Rhodopseudomonas palustris TIE-1 6412934 YP_001994198.1 CDS Rpal_5235 NC_011004.1 5645446 5646339 D PFAM: ribonuclease BN; KEGG: bbt:BBta_1137 ribonuclease BN-like family transmembrane protein; ribonuclease BN 5645446..5646339 Rhodopseudomonas palustris TIE-1 6412935 YP_001994199.1 CDS Rpal_5236 NC_011004.1 5646266 5647483 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nha:Nham_3485 histidine kinase; histidine kinase complement(5646266..5647483) Rhodopseudomonas palustris TIE-1 6412936 YP_001994200.1 CDS Rpal_5237 NC_011004.1 5647583 5648464 R this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase complement(5647583..5648464) Rhodopseudomonas palustris TIE-1 6412937 YP_001994201.1 CDS Rpal_5238 NC_011004.1 5648585 5649304 D PFAM: HhH-GPD family protein; KEGG: bja:bll1371 DNA-3-methyladenine glycosidase II; HhH-GPD family protein 5648585..5649304 Rhodopseudomonas palustris TIE-1 6412938 YP_001994202.1 CDS Rpal_5239 NC_011004.1 5649440 5649883 R Inhibits transcription at high concentrations of nickel; nickel responsive regulator complement(5649440..5649883) Rhodopseudomonas palustris TIE-1 6412939 YP_001994203.1 CDS Rpal_5240 NC_011004.1 5650070 5652241 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bra:BRADO5677 outer membrane receptor; iron transport (COG1629); TonB-dependent receptor 5650070..5652241 Rhodopseudomonas palustris TIE-1 6412940 YP_001994204.1 CDS Rpal_5241 NC_011004.1 5652657 5653010 D PFAM: PRC-barrel domain protein; KEGG: bra:BRADO3942 conserved hypothetical protein with photosynthetic reaction centre domain (PCR-barrel); PRC-barrel domain-containing protein 5652657..5653010 Rhodopseudomonas palustris TIE-1 6412941 YP_001994205.1 CDS Rpal_5242 NC_011004.1 5653057 5654673 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bra:BRADO0511 glycosyl hydrolase, family 13; alpha-glucosidase; alpha amylase complement(5653057..5654673) Rhodopseudomonas palustris TIE-1 6412942 YP_001994206.1 CDS Rpal_5244 NC_011004.1 5655187 5655720 D hypothetical protein 5655187..5655720 Rhodopseudomonas palustris TIE-1 6412944 YP_001994207.1 CDS Rpal_5245 NC_011004.1 5656000 5656524 D KEGG: yli:YALI0E34089g hypothetical protein; hypothetical protein 5656000..5656524 Rhodopseudomonas palustris TIE-1 6412945 YP_001994208.1 CDS Rpal_5246 NC_011004.1 5656554 5656691 R hypothetical protein complement(5656554..5656691) Rhodopseudomonas palustris TIE-1 6412946 YP_001994209.1 CDS Rpal_5247 NC_011004.1 5657223 5657816 D TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: bja:bll1113 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 5657223..5657816 Rhodopseudomonas palustris TIE-1 6412948 YP_001994210.1 CDS Rpal_5248 NC_011004.1 5657813 5659249 R PFAM: multi antimicrobial extrusion protein MatE; KEGG: bbt:BBta_0771 cation-driven multidrug efflux pump; multi antimicrobial extrusion protein MatE complement(5657813..5659249) Rhodopseudomonas palustris TIE-1 6412949 YP_001994211.1 CDS Rpal_5249 NC_011004.1 5659759 5661738 D PFAM: metallophosphoesterase; KEGG: aba:Acid345_2905 metallophosphoesterase; metallophosphoesterase 5659759..5661738 Rhodopseudomonas palustris TIE-1 6412950 YP_001994212.1 CDS Rpal_5250 NC_011004.1 5661798 5662904 R Catalyzes the deamination of dCTP to form dUTP; 2'-deoxycytidine 5'-triphosphate deaminase complement(5661798..5662904) Rhodopseudomonas palustris TIE-1 6412951 YP_001994213.1 CDS Rpal_5251 NC_011004.1 5663168 5664379 D catalyzes the conversion of O-succinylhomoserine and sulfide to homocysteine; second step in methionine biosynthesis; O-succinylhomoserine sulfhydrylase 5663168..5664379 Rhodopseudomonas palustris TIE-1 6412952 YP_001994214.1 CDS Rpal_5252 NC_011004.1 5664527 5665495 R PFAM: lipolytic protein G-D-S-L family; KEGG: bja:blr1104 hypothetical protein; G-D-S-L family lipolytic protein complement(5664527..5665495) Rhodopseudomonas palustris TIE-1 6412953 YP_001994215.1 CDS Rpal_5253 NC_011004.1 5665495 5666274 R KEGG: nha:Nham_0221 hypothetical protein; hypothetical protein complement(5665495..5666274) Rhodopseudomonas palustris TIE-1 6412954 YP_001994216.1 CDS Rpal_5254 NC_011004.1 5666271 5667536 R KEGG: bja:blr1102 hypothetical protein; hypothetical protein complement(5666271..5667536) Rhodopseudomonas palustris TIE-1 6412955 YP_001994217.1 CDS apaG NC_011004.1 5667787 5668179 D protein associated with Co2+ and Mg2+ efflux; ApaG protein 5667787..5668179 Rhodopseudomonas palustris TIE-1 6412956 YP_001994218.1 CDS Rpal_5256 NC_011004.1 5668239 5669285 R KEGG: bja:bll2703 hypothetical protein; hypothetical protein complement(5668239..5669285) Rhodopseudomonas palustris TIE-1 6412957 YP_001994219.1 CDS hslO NC_011004.1 5670270 5671325 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(5670270..5671325) Rhodopseudomonas palustris TIE-1 6412958 YP_001994220.1 CDS Rpal_5258 NC_011004.1 5671597 5672526 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(5671597..5672526) Rhodopseudomonas palustris TIE-1 6412959 YP_001994221.1 CDS argD NC_011004.1 5672526 5673737 R DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase protein complement(5672526..5673737) Rhodopseudomonas palustris TIE-1 6412960 YP_001994222.1 CDS Rpal_5260 NC_011004.1 5674213 5674722 D PFAM: GcrA cell cycle regulator; KEGG: nha:Nham_0641 GcrA cell cycle regulator; GcrA cell cycle regulator 5674213..5674722 Rhodopseudomonas palustris TIE-1 6412961 YP_001994223.1 CDS Rpal_5261 NC_011004.1 5674963 5675676 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bra:BRADO1679 response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family); winged helix family two component transcriptional regulator complement(5674963..5675676) Rhodopseudomonas palustris TIE-1 6412962 YP_001994224.1 CDS Rpal_5262 NC_011004.1 5675754 5676470 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: bra:BRADO1678 transcriptional repressor for high-affinity phosphate uptake; phosphate uptake regulator PhoU complement(5675754..5676470) Rhodopseudomonas palustris TIE-1 6412963 YP_001994225.1 CDS pstB NC_011004.1 5676494 5677315 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(5676494..5677315) Rhodopseudomonas palustris TIE-1 6412964 YP_001994226.1 CDS Rpal_5264 NC_011004.1 5677312 5678175 R TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO1676 high-affinity phosphate transport protein (ABC superfamily, membrane); phosphate ABC transporter permease complement(5677312..5678175) Rhodopseudomonas palustris TIE-1 6412965 YP_001994227.1 CDS Rpal_5265 NC_011004.1 5678177 5679178 R TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: ABC transporter inner membrane protein; KEGG: bra:BRADO1675 high-affinity phosphate transport protein (ABC superfamily, membrane); phosphate ABC transporter permease complement(5678177..5679178) Rhodopseudomonas palustris TIE-1 6412966 YP_001994228.1 CDS Rpal_5266 NC_011004.1 5679392 5680402 R TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bbt:BBta_1986 high-affinity phosphate transport protein (ABC superfamily, peri_bind); phosphate ABC transporter substrate-binding protein complement(5679392..5680402) Rhodopseudomonas palustris TIE-1 6412967 YP_001994229.1 CDS Rpal_5267 NC_011004.1 5680551 5681897 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: bja:blr1090 phosphate regulon, two-component sensor histidine kinase; PAS/PAC sensor signal transduction histidine kinase complement(5680551..5681897) Rhodopseudomonas palustris TIE-1 6412968 YP_001994230.1 CDS Rpal_5268 NC_011004.1 5681901 5682935 R KEGG: bra:BRADO6783 hypothetical protein; hypothetical protein complement(5681901..5682935) Rhodopseudomonas palustris TIE-1 6412969 YP_001994231.1 CDS Rpal_5269 NC_011004.1 5683183 5683479 R KEGG: nha:Nham_0632 hypothetical protein; hypothetical protein complement(5683183..5683479) Rhodopseudomonas palustris TIE-1 6412970 YP_001994232.1 CDS Rpal_5270 NC_011004.1 5683483 5684877 R PFAM: OmpA/MotB domain protein; KEGG: bja:blr1084 hypothetical protein; OmpA/MotB domain-containing protein complement(5683483..5684877) Rhodopseudomonas palustris TIE-1 6412971 YP_001994233.1 CDS Rpal_5271 NC_011004.1 5685033 5686091 D PFAM: polysaccharide deacetylase; KEGG: bbt:BBta_0752 polysaccharide deacetylase; polysaccharide deacetylase 5685033..5686091 Rhodopseudomonas palustris TIE-1 6412972 YP_001994234.1 CDS Rpal_5272 NC_011004.1 5686152 5686958 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_0751 short-chain dehydrogenase/reductase (SDR); short-chain dehydrogenase/reductase SDR 5686152..5686958 Rhodopseudomonas palustris TIE-1 6412973 YP_001994235.1 CDS Rpal_5273 NC_011004.1 5687181 5688098 D consists of N-terminal helix-turn-helix domain and C-terminal shikimate kinase-like domain which may bind benzoyl-CoA; controls inducible expression of the bzd catabolic operon that is involved in the anaerobic catabolism of benzoate; anaerobic benzoate catabolism transcriptional regulator 5687181..5688098 Rhodopseudomonas palustris TIE-1 6412974 YP_001994236.1 CDS Rpal_5274 NC_011004.1 5688105 5689433 R PFAM: extracellular solute-binding protein family 1; KEGG: nha:Nham_3686 extracellular solute-binding protein, family 1; family 1 extracellular solute-binding protein complement(5688105..5689433) Rhodopseudomonas palustris TIE-1 6412975 YP_001994237.1 CDS Rpal_5275 NC_011004.1 5689640 5691721 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: bja:bll1031 similar to histidine kinase; integral membrane sensor signal transduction histidine kinase 5689640..5691721 Rhodopseudomonas palustris TIE-1 6412976 YP_001994238.1 CDS Rpal_5276 NC_011004.1 5691691 5693430 D KEGG: nha:Nham_3684 response regulator receiver sensor signal transduction histidine kinase; TIGRFAM: phage head-tail adaptor; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver sensor signal transduction histidine kinase 5691691..5693430 Rhodopseudomonas palustris TIE-1 6412977 YP_001994239.1 CDS Rpal_5277 NC_011004.1 5693427 5694167 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_3683 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 5693427..5694167 Rhodopseudomonas palustris TIE-1 6412978 YP_001994240.1 CDS Rpal_5278 NC_011004.1 5694372 5694983 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 5694372..5694983 Rhodopseudomonas palustris TIE-1 6412979 YP_001994241.1 CDS Rpal_5279 NC_011004.1 5695490 5696896 D PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: bbt:BBta_0708 cytochrome bd ubiquinol oxidase, subunit I (CydA, QxtA); cytochrome bd ubiquinol oxidase subunit I 5695490..5696896 Rhodopseudomonas palustris TIE-1 6412980 YP_001994242.1 CDS Rpal_5280 NC_011004.1 5696916 5697920 D TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: bbt:BBta_0707 cytochrome bd ubiquinol oxidase, subunit II (CydB, QxtB); cytochrome d ubiquinol oxidase subunit II 5696916..5697920 Rhodopseudomonas palustris TIE-1 6412981 YP_001994243.1 CDS Rpal_5281 NC_011004.1 5697917 5698048 D hypothetical protein 5697917..5698048 Rhodopseudomonas palustris TIE-1 6412982 YP_001994244.1 CDS Rpal_5282 NC_011004.1 5698090 5698683 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bra:BRADO6837 conserved hypothetical protein; signal peptide; ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 5698090..5698683 Rhodopseudomonas palustris TIE-1 6412983 YP_001994245.1 CDS Rpal_5283 NC_011004.1 5698729 5699763 D SMART: extracellular solute-binding protein family 3; KEGG: bra:BRADO6838 general L-amino acid-binding periplasmic protein; family 3 extracellular solute-binding protein 5698729..5699763 Rhodopseudomonas palustris TIE-1 6412984 YP_001994246.1 CDS Rpal_5284 NC_011004.1 5700162 5701301 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_0703 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(5700162..5701301) Rhodopseudomonas palustris TIE-1 6412985 YP_001994247.1 CDS Rpal_5285 NC_011004.1 5701469 5702653 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bbt:BBta_0702 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(5701469..5702653) Rhodopseudomonas palustris TIE-1 6412986 YP_001994248.1 CDS Rpal_5286 NC_011004.1 5702818 5703363 D PFAM: carboxymuconolactone decarboxylase; KEGG: bbt:BBta_0701 hypothetical protein; carboxymuconolactone decarboxylase 5702818..5703363 Rhodopseudomonas palustris TIE-1 6412987 YP_001994249.1 CDS Rpal_5287 NC_011004.1 5703418 5704635 R PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr1018 hypothetical protein; major facilitator superfamily protein complement(5703418..5704635) Rhodopseudomonas palustris TIE-1 6412988 YP_001994250.1 CDS Rpal_5288 NC_011004.1 5704721 5705968 R PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr1017 MFS permease; major facilitator superfamily protein complement(5704721..5705968) Rhodopseudomonas palustris TIE-1 6412989 YP_001994251.1 CDS Rpal_5289 NC_011004.1 5706044 5706760 R PFAM: protein of unknown function DUF938; KEGG: bbt:BBta_0698 hypothetical protein; hypothetical protein complement(5706044..5706760) Rhodopseudomonas palustris TIE-1 6412990 YP_001994252.1 CDS Rpal_5290 NC_011004.1 5707204 5709225 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_2621 TonB-dependent receptor, plug; TonB-dependent receptor plug 5707204..5709225 Rhodopseudomonas palustris TIE-1 6412991 YP_001994253.1 CDS Rpal_5291 NC_011004.1 5709408 5709695 D KEGG: nwi:Nwi_2376 hypothetical protein; hypothetical protein 5709408..5709695 Rhodopseudomonas palustris TIE-1 6412992 YP_001994254.1 CDS Rpal_5292 NC_011004.1 5709869 5710063 D hypothetical protein 5709869..5710063 Rhodopseudomonas palustris TIE-1 6412993 YP_001994255.1 CDS Rpal_5294 NC_011004.1 5711582 5712802 D KEGG: bra:BRADO0975 ABC-type branched-chain amino acid transporter periplasmic binding protein; branched-chain amino acid ABC transporter periplasmic protein 5711582..5712802 Rhodopseudomonas palustris TIE-1 6412995 YP_001994256.1 CDS Rpal_5295 NC_011004.1 5712919 5714205 R PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr1003 hypothetical protein; major facilitator superfamily protein complement(5712919..5714205) Rhodopseudomonas palustris TIE-1 6412996 YP_001994257.1 CDS Rpal_5296 NC_011004.1 5714478 5715131 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_0686 ABC transporter ATP-binding protein; ABC transporter 5714478..5715131 Rhodopseudomonas palustris TIE-1 6412997 YP_001994258.1 CDS Rpal_5297 NC_011004.1 5715128 5717593 D PFAM: protein of unknown function DUF214; KEGG: bja:bll1001 probable ABC transporter permease protein; hypothetical protein 5715128..5717593 Rhodopseudomonas palustris TIE-1 6412998 YP_001994259.1 CDS Rpal_5298 NC_011004.1 5717583 5718668 D KEGG: nha:Nham_0344 hypothetical protein; hypothetical protein 5717583..5718668 Rhodopseudomonas palustris TIE-1 6412999 YP_001994260.1 CDS Rpal_5299 NC_011004.1 5718735 5719127 D PFAM: membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); KEGG: bja:bll0998 hypothetical protein; eicosanoid and glutathione metabolism membrane protein 5718735..5719127 Rhodopseudomonas palustris TIE-1 6413000 YP_001994261.1 CDS Rpal_5300 NC_011004.1 5719391 5720584 R KEGG: bja:blr0998 probable periplasmic substrate binding protein; periplasmic substrate binding protein complement(5719391..5720584) Rhodopseudomonas palustris TIE-1 6413001 YP_001994262.1 CDS Rpal_5301 NC_011004.1 5720670 5722355 R KEGG: bja:bll1872 hypothetical protein; hypothetical protein complement(5720670..5722355) Rhodopseudomonas palustris TIE-1 6413002 YP_001994263.1 CDS Rpal_5302 NC_011004.1 5722443 5724329 R molecular chaperone; heat shock protein 90 complement(5722443..5724329) Rhodopseudomonas palustris TIE-1 6413003 YP_001994264.1 CDS Rpal_5303 NC_011004.1 5724417 5725793 R PFAM: ATP-binding region ATPase domain protein; KEGG: nha:Nham_1886 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(5724417..5725793) Rhodopseudomonas palustris TIE-1 6413004 YP_001994265.1 CDS Rpal_5304 NC_011004.1 5725790 5726455 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_1885 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator complement(5725790..5726455) Rhodopseudomonas palustris TIE-1 6413005 YP_001994266.1 CDS Rpal_5305 NC_011004.1 5726455 5726793 R PFAM: propeptide PepSY amd peptidase M4; KEGG: nha:Nham_1884 propeptide, PepSY amd peptidase M4; propeptide PepSY amd peptidase M4 complement(5726455..5726793) Rhodopseudomonas palustris TIE-1 6413006 YP_001994267.1 CDS Rpal_5306 NC_011004.1 5726891 5727199 R hypothetical protein complement(5726891..5727199) Rhodopseudomonas palustris TIE-1 6413007 YP_001994268.1 CDS mtnA NC_011004.1 5727383 5728507 R isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase complement(5727383..5728507) Rhodopseudomonas palustris TIE-1 6413008 YP_001994269.1 CDS Rpal_5308 NC_011004.1 5728682 5729557 R Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate; 5'-methylthioadenosine phosphorylase complement(5728682..5729557) Rhodopseudomonas palustris TIE-1 6413009 YP_001994270.1 CDS Rpal_5309 NC_011004.1 5729840 5730979 D PFAM: iron-containing alcohol dehydrogenase; KEGG: bja:bll0995 maleylacetate reductase; iron-containing alcohol dehydrogenase 5729840..5730979 Rhodopseudomonas palustris TIE-1 6413010 YP_001994271.1 CDS Rpal_5310 NC_011004.1 5731145 5732695 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 5731145..5732695 Rhodopseudomonas palustris TIE-1 6413011 YP_001994272.1 CDS Rpal_5311 NC_011004.1 5732740 5733114 R PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: pla:Plav_3012 ethyl tert-butyl ether degradation EthD; ethyl tert-butyl ether degradation EthD complement(5732740..5733114) Rhodopseudomonas palustris TIE-1 6413012 YP_001994273.1 CDS Rpal_5312 NC_011004.1 5733186 5733539 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: smd:Smed_4100 transcriptional regulator, MerR family; MerR family transcriptional regulator 5733186..5733539 Rhodopseudomonas palustris TIE-1 6413013 YP_001994274.1 CDS Rpal_5313 NC_011004.1 5733615 5735465 D KEGG: bbt:BBta_6924 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 5733615..5735465 Rhodopseudomonas palustris TIE-1 6413014 YP_001994275.1 CDS Rpal_5314 NC_011004.1 5735532 5735759 D TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: azc:AZC_4413 hypothetical protein; FmdB family regulatory protein 5735532..5735759 Rhodopseudomonas palustris TIE-1 6413015 YP_001994276.1 CDS Rpal_5315 NC_011004.1 5735783 5736061 R KEGG: bbt:BBta_7859 exported protein of unknown function; hypothetical protein complement(5735783..5736061) Rhodopseudomonas palustris TIE-1 6413016 YP_001994277.1 CDS Rpal_5316 NC_011004.1 5736341 5737927 D PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll0843 crotonobetaine/carnitine-CoA ligase; AMP-dependent synthetase and ligase 5736341..5737927 Rhodopseudomonas palustris TIE-1 6413017 YP_001994278.1 CDS Rpal_5317 NC_011004.1 5738035 5739138 R PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: bja:blr0842 hypothetical protein; response regulator receiver modulated metal dependent phosphohydrolase complement(5738035..5739138) Rhodopseudomonas palustris TIE-1 6413018 YP_001994279.1 CDS Rpal_5318 NC_011004.1 5739356 5739724 D KEGG: nha:Nham_4036 hypothetical protein; hypothetical protein 5739356..5739724 Rhodopseudomonas palustris TIE-1 6413019 YP_001994280.1 CDS Rpal_5319 NC_011004.1 5739780 5740451 D PFAM: dienelactone hydrolase; KEGG: bbt:BBta_7870 carboxymethylenebutenolidase; carboxymethylenebutenolidase 5739780..5740451 Rhodopseudomonas palustris TIE-1 6413020 YP_001994281.1 CDS Rpal_5320 NC_011004.1 5740478 5741119 R PFAM: polysaccharide export protein; KEGG: bja:blr0835 probable polysaccharide export protein; polysaccharide export protein complement(5740478..5741119) Rhodopseudomonas palustris TIE-1 6413021 YP_001994282.1 CDS Rpal_5321 NC_011004.1 5741254 5741910 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(5741254..5741910) Rhodopseudomonas palustris TIE-1 6413022 YP_001994283.1 CDS Rpal_5322 NC_011004.1 5742078 5742395 R KEGG: bja:blr0833 hypothetical protein; hypothetical protein complement(5742078..5742395) Rhodopseudomonas palustris TIE-1 6413023 YP_001994284.1 CDS rpsT NC_011004.1 5742761 5743027 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 5742761..5743027 Rhodopseudomonas palustris TIE-1 6413024 Rpal_R0001 tRNA Rpal_R0001 NC_011004.1 51747 51831 D tRNA-Leu 51747..51831 Rhodopseudomonas palustris TIE-1 6407688 Rpal_R0002 tRNA Rpal_R0002 NC_011004.1 66535 66610 R tRNA-Ala complement(66535..66610) Rhodopseudomonas palustris TIE-1 6407705 Rpal_R0003 tRNA Rpal_R0003 NC_011004.1 166045 166134 R tRNA-Ser complement(166045..166134) Rhodopseudomonas palustris TIE-1 6407793 Rpal_R0004 tRNA Rpal_R0004 NC_011004.1 276776 276851 D tRNA-Thr 276776..276851 Rhodopseudomonas palustris TIE-1 6407904 Rpal_R0005 tRNA Rpal_R0005 NC_011004.1 287848 287922 R tRNA-Gly complement(287848..287922) Rhodopseudomonas palustris TIE-1 6407913 Rpal_R0006 tRNA Rpal_R0006 NC_011004.1 397100 397174 D tRNA-Glu 397100..397174 Rhodopseudomonas palustris TIE-1 6408020 Rpal_R0007 tRNA Rpal_R0007 NC_011004.1 451151 451226 D tRNA-Ala 451151..451226 Rhodopseudomonas palustris TIE-1 6408067 Rpal_R0008 tRNA Rpal_R0008 NC_011004.1 515920 515996 R tRNA-Arg complement(515920..515996) Rhodopseudomonas palustris TIE-1 6408125 Rpal_R0009 tRNA Rpal_R0009 NC_011004.1 593936 594020 R tRNA-Leu complement(593936..594020) Rhodopseudomonas palustris TIE-1 6408191 Rpal_R0010 tRNA Rpal_R0010 NC_011004.1 693187 693263 D tRNA-Arg 693187..693263 Rhodopseudomonas palustris TIE-1 6408291 Rpal_R0011 tRNA Rpal_R0011 NC_011004.1 716008 716084 D tRNA-Met 716008..716084 Rhodopseudomonas palustris TIE-1 6408327 Rpal_R0012 tRNA Rpal_R0012 NC_011004.1 891310 891386 R tRNA-Arg complement(891310..891386) Rhodopseudomonas palustris TIE-1 6408495 Rpal_R0013 tRNA Rpal_R0013 NC_011004.1 1042801 1042875 D tRNA-Val 1042801..1042875 Rhodopseudomonas palustris TIE-1 6408631 Rpal_R0014 tRNA Rpal_R0014 NC_011004.1 1094029 1094103 D tRNA-Gln 1094029..1094103 Rhodopseudomonas palustris TIE-1 6408684 Rpal_R0015 tRNA Rpal_R0015 NC_011004.1 1345171 1345247 D tRNA-Pro 1345171..1345247 Rhodopseudomonas palustris TIE-1 6408927 Rpal_R0016 tRNA Rpal_R0016 NC_011004.1 1581285 1581361 D tRNA-Met 1581285..1581361 Rhodopseudomonas palustris TIE-1 6409156 Rpal_R0017 tRNA Rpal_R0017 NC_011004.1 1946062 1946136 R tRNA-Val complement(1946062..1946136) Rhodopseudomonas palustris TIE-1 6409469 Rpal_R0018 tRNA Rpal_R0018 NC_011004.1 1968413 1968488 D tRNA-Met 1968413..1968488 Rhodopseudomonas palustris TIE-1 6409489 Rpal_R0019 tRNA Rpal_R0019 NC_011004.1 2032646 2032722 D tRNA-Met 2032646..2032722 Rhodopseudomonas palustris TIE-1 6409543 Rpal_R0020 tRNA Rpal_R0020 NC_011004.1 2456816 2456891 D tRNA-Lys 2456816..2456891 Rhodopseudomonas palustris TIE-1 6409924 Rpal_R0021 tRNA Rpal_R0021 NC_011004.1 2524629 2524699 D tRNA-Ser 2524629..2524699 Rhodopseudomonas palustris TIE-1 6410001 Rpal_R0022 tRNA Rpal_R0022 NC_011004.1 2886586 2886675 R tRNA-Ser complement(2886586..2886675) Rhodopseudomonas palustris TIE-1 6410318 Rpal_R0023 tRNA Rpal_R0023 NC_011004.1 2925493 2925586 R tRNA-Ser complement(2925493..2925586) Rhodopseudomonas palustris TIE-1 6410359 Rpal_R0024 tRNA Rpal_R0024 NC_011004.1 3042195 3042269 R tRNA-Glu complement(3042195..3042269) Rhodopseudomonas palustris TIE-1 6410462 Rpal_R0025 tRNA Rpal_R0025 NC_011004.1 3046537 3046613 D tRNA-Pro 3046537..3046613 Rhodopseudomonas palustris TIE-1 6410468 Rpal_R0026 tRNA Rpal_R0026 NC_011004.1 3068213 3068289 R tRNA-Arg complement(3068213..3068289) Rhodopseudomonas palustris TIE-1 6410489 Rpal_R0027 tRNA Rpal_R0027 NC_011004.1 3103961 3104034 R tRNA-Cys complement(3103961..3104034) Rhodopseudomonas palustris TIE-1 6410513 Rpal_R0028 tRNA Rpal_R0028 NC_011004.1 3107810 3107884 R tRNA-Asn complement(3107810..3107884) Rhodopseudomonas palustris TIE-1 6410518 Rpal_R0029 tRNA Rpal_R0029 NC_011004.1 3192731 3192806 R tRNA-Lys complement(3192731..3192806) Rhodopseudomonas palustris TIE-1 6410597 Rpal_R0030 tRNA Rpal_R0030 NC_011004.1 3286993 3287070 D tRNA-Pro 3286993..3287070 Rhodopseudomonas palustris TIE-1 6410693 Rpal_R0031 tRNA Rpal_R0031 NC_011004.1 3551085 3551161 R tRNA-Asp complement(3551085..3551161) Rhodopseudomonas palustris TIE-1 6410972 Rpal_R0032 tRNA Rpal_R0032 NC_011004.1 3557929 3558005 D tRNA-Val 3557929..3558005 Rhodopseudomonas palustris TIE-1 6410977 Rpal_R0033 tRNA Rpal_R0033 NC_011004.1 3567876 3567960 R tRNA-Leu complement(3567876..3567960) Rhodopseudomonas palustris TIE-1 6410983 Rpal_R0034 tRNA Rpal_R0034 NC_011004.1 3610347 3610423 R tRNA-Met complement(3610347..3610423) Rhodopseudomonas palustris TIE-1 6411028 Rpal_R0035 tRNA Rpal_R0035 NC_011004.1 3826825 3826909 R tRNA-Leu complement(3826825..3826909) Rhodopseudomonas palustris TIE-1 6411252 Rpal_R0036 tRNA Rpal_R0036 NC_011004.1 3843582 3843658 D tRNA-Arg 3843582..3843658 Rhodopseudomonas palustris TIE-1 6411269 Rpal_R0037 tRNA Rpal_R0037 NC_011004.1 3961555 3961630 R tRNA-Trp complement(3961555..3961630) Rhodopseudomonas palustris TIE-1 6411378 Rpal_R0038 tRNA Rpal_R0038 NC_011004.1 3991360 3991433 R tRNA-Gly complement(3991360..3991433) Rhodopseudomonas palustris TIE-1 6411407 Rpal_R0039 tRNA Rpal_R0039 NC_011004.1 4133504 4133589 R tRNA-Tyr complement(4133504..4133589) Rhodopseudomonas palustris TIE-1 6411522 Rpal_R0040 tRNA Rpal_R0040 NC_011004.1 4135946 4136020 D tRNA-Thr 4135946..4136020 Rhodopseudomonas palustris TIE-1 6411526 Rpal_R0041 tRNA Rpal_R0041 NC_011004.1 4214520 4214608 R tRNA-Leu complement(4214520..4214608) Rhodopseudomonas palustris TIE-1 6411608 Rpal_R0042 tRNA Rpal_R0042 NC_011004.1 4268011 4268084 D tRNA-Gln 4268011..4268084 Rhodopseudomonas palustris TIE-1 6411656 Rpal_R0043 tRNA Rpal_R0043 NC_011004.1 4963974 4964048 D tRNA-OTHER 4963974..4964048 Rhodopseudomonas palustris TIE-1 6412289 Rpal_R0044 tRNA Rpal_R0044 NC_011004.1 4975161 4975237 R tRNA-His complement(4975161..4975237) Rhodopseudomonas palustris TIE-1 6412301 Rpal_R0047 tRNA Rpal_R0047 NC_011004.1 5293484 5293559 R tRNA-Ala complement(5293484..5293559) Rhodopseudomonas palustris TIE-1 6412607 Rpal_R0048 tRNA Rpal_R0048 NC_011004.1 5293593 5293669 R tRNA-Ile complement(5293593..5293669) Rhodopseudomonas palustris TIE-1 6412608 Rpal_R0051 tRNA Rpal_R0051 NC_011004.1 5400828 5400903 R tRNA-Phe complement(5400828..5400903) Rhodopseudomonas palustris TIE-1 6412709 Rpal_R0052 tRNA Rpal_R0052 NC_011004.1 5411552 5411626 D tRNA-Thr 5411552..5411626 Rhodopseudomonas palustris TIE-1 6412723 Rpal_R0054 tRNA Rpal_R0054 NC_011004.1 5531465 5531540 R tRNA-Ala complement(5531465..5531540) Rhodopseudomonas palustris TIE-1 6412837 Rpal_R0055 tRNA Rpal_R0055 NC_011004.1 5531574 5531650 R tRNA-Ile complement(5531574..5531650) Rhodopseudomonas palustris TIE-1 6412838 Rpal_R0057 tRNA Rpal_R0057 NC_011004.1 5534217 5534306 R tRNA-Ser complement(5534217..5534306) Rhodopseudomonas palustris TIE-1 6412840 Rpal_R0058 tRNA Rpal_R0058 NC_011004.1 5656965 5657038 R tRNA-Gly complement(5656965..5657038) Rhodopseudomonas palustris TIE-1 6412947 Rpal_R0045 rRNA Rpal_R0045 NC_011004.1 5290069 5290182 R 5S ribosomal RNA complement(5290069..5290182) Rhodopseudomonas palustris TIE-1 6412605 Rpal_R0046 rRNA Rpal_R0046 NC_011004.1 5290246 5293072 R 23S ribosomal RNA complement(5290246..5293072) Rhodopseudomonas palustris TIE-1 6412606 Rpal_R0049 rRNA Rpal_R0049 NC_011004.1 5293887 5295368 R 16S ribosomal RNA complement(5293887..5295368) Rhodopseudomonas palustris TIE-1 6412609 Rpal_R0061 rRNA Rpal_R0061 NC_011004.1 5528051 5528164 R 5S ribosomal RNA complement(5528051..5528164) Rhodopseudomonas palustris TIE-1 6412835 Rpal_R0053 rRNA Rpal_R0053 NC_011004.1 5528228 5531053 R 23S ribosomal RNA complement(5528228..5531053) Rhodopseudomonas palustris TIE-1 6412836 Rpal_R0056 rRNA Rpal_R0056 NC_011004.1 5531868 5533349 R 16S ribosomal RNA complement(5531868..5533349) Rhodopseudomonas palustris TIE-1 6412839