-- dump date 20140620_034905 -- class Genbank::CDS -- table cds_note -- id note YP_005293402.1 COG1806 Uncharacterized protein conserved in bacteria YP_005293403.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_005293404.1 COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component YP_005293405.1 COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component YP_005293406.1 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases YP_005293407.1 COG2337 Growth inhibitor YP_005293408.1 COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase YP_005293409.1 COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases YP_005293410.1 COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_005293412.1 COG1752 Predicted esterase of the alpha-beta hydrolase superfamily YP_005293413.1 COG1752 Predicted esterase of the alpha-beta hydrolase superfamily YP_005293414.1 COG1196 Chromosome segregation ATPases YP_005293417.1 COG0042 tRNA-dihydrouridine synthase YP_005293420.1 COG0802 Predicted ATPase or kinase YP_005293421.1 COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin YP_005293422.1 COG0617 tRNA nucleotidyltransferase/poly(A) polymerase YP_005293424.1 COG0658 Predicted membrane metal-binding protein YP_005293430.1 COG0740 Protease subunit of ATP-dependent Clp proteases YP_005293432.1 COG0457 FOG: TPR repeat YP_005293433.1 COG0711 F0F1-type ATP synthase, subunit b YP_005293434.1 COG0711 F0F1-type ATP synthase, subunit b YP_005293435.1 COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K YP_005293436.1 COG0356 F0F1-type ATP synthase, subunit a YP_005293437.1 COG5336 Uncharacterized protein conserved in bacteria YP_005293438.1 COG1651 Protein-disulfide isomerase YP_005293439.1 COG1329 Transcriptional regulators, similar to M. xanthus CarD YP_005293440.1 COG0500 SAM-dependent methyltransferases YP_005293442.1 COG1195 Recombinational DNA repair ATPase (RecF pathway) YP_005293443.1 COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C YP_005293444.1 COG0262 Dihydrofolate reductase YP_005293445.1 COG0294 Dihydropteroate synthase and related enzymes YP_005293446.1 COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase YP_005293450.1 COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems YP_005293451.1 COG1678 Putative transcriptional regulator YP_005293452.1 COG1286 Uncharacterized membrane protein, required for colicin V production YP_005293460.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005293461.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005293463.1 COG0542 ATPases with chaperone activity, ATP-binding subunit YP_005293465.1 COG0533 Metal-dependent proteases with possible chaperone activity YP_005293466.1 COG1398 Fatty-acid desaturase YP_005293467.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005293468.1 COG0360 Ribosomal protein S6 YP_005293469.1 COG0238 Ribosomal protein S18 YP_005293470.1 COG0359 Ribosomal protein L9 YP_005293471.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_005293472.1 COG0465 ATP-dependent Zn proteases YP_005293473.1 COG0270 Site-specific DNA methylase YP_005293474.1 COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit YP_005293476.1 COG1565 Uncharacterized conserved protein YP_005293477.1 COG0682 Prolipoprotein diacylglyceryltransferase YP_005293479.1 COG0668 Small-conductance mechanosensitive channel YP_005293480.1 COG0706 Preprotein translocase subunit YidC YP_005293481.1 COG0558 Phosphatidylglycerophosphate synthase YP_005293483.1 COG0500 SAM-dependent methyltransferases YP_005293486.1 COG0242 N-formylmethionyl-tRNA deformylase YP_005293487.1 COG3202 ATP/ADP translocase YP_005293488.1 COG2271 Sugar phosphate permease YP_005293489.1 COG0105 Nucleoside diphosphate kinase YP_005293490.1 COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division YP_005293491.1 COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division YP_005293492.1 COG1192 ATPases involved in chromosome partitioning YP_005293493.1 COG1475 Predicted transcriptional regulators YP_005293494.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_005293496.1 COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase YP_005293500.1 COG0316 Uncharacterized conserved protein YP_005293501.1 COG0232 dGTP triphosphohydrolase YP_005293502.1 COG0018 Arginyl-tRNA synthetase YP_005293504.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit YP_005293506.1 COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases YP_005293507.1 COG0717 Deoxycytidine deaminase YP_005293508.1 COG1952 Preprotein translocase subunit SecB YP_005293509.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005293510.1 COG2904 Uncharacterized protein conserved in bacteria YP_005293511.1 COG3820 Uncharacterized protein conserved in bacteria YP_005293512.1 COG1282 NAD/NADP transhydrogenase beta subunit YP_005293513.1 COG3047 Outer membrane protein W YP_005293514.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily YP_005293515.1 COG0477 Permeases of the major facilitator superfamily YP_005293519.1 COG2188 Transcriptional regulators YP_005293520.1 COG0215 Cysteinyl-tRNA synthetase YP_005293521.1 COG0052 Ribosomal protein S2 YP_005293522.1 COG0264 Translation elongation factor Ts YP_005293525.1 COG1519 3-deoxy-D-manno-octulosonic-acid transferase YP_005293526.1 COG2121 Uncharacterized protein conserved in bacteria YP_005293527.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase YP_005293528.1 COG2161 Antitoxin of toxin-antitoxin stability system YP_005293529.1 COG0457 FOG: TPR repeat YP_005293530.1 COG2853 Surface lipoprotein YP_005293531.1 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component YP_005293532.1 COG0462 Phosphoribosylpyrophosphate synthetase YP_005293533.1 COG0462 Phosphoribosylpyrophosphate synthetase YP_005293535.1 COG0787 Alanine racemase YP_005293536.1 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component YP_005293537.1 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component YP_005293542.1 COG0457 FOG: TPR repeat YP_005293544.1 COG0227 Ribosomal protein L28 YP_005293545.1 COG0254 Ribosomal protein L31 YP_005293546.1 COG0218 Predicted GTPase YP_005293547.1 COG0548 Acetylglutamate kinase YP_005293548.1 COG3702 Type IV secretory pathway, VirB3 components YP_005293549.1 COG3451 Type IV secretory pathway, VirB4 components YP_005293550.1 COG3704 Type IV secretory pathway, VirB6 components YP_005293551.1 COG3704 Type IV secretory pathway, VirB6 components YP_005293552.1 COG3704 Type IV secretory pathway, VirB6 components YP_005293553.1 COG3704 Type IV secretory pathway, VirB6 components YP_005293554.1 COG3704 Type IV secretory pathway, VirB6 components YP_005293557.1 COG0336 tRNA-(guanine-N1)-methyltransferase YP_005293558.1 COG0335 Ribosomal protein L19 YP_005293559.1 COG3750 Uncharacterized protein conserved in bacteria YP_005293560.1 COG0341 Preprotein translocase subunit SecF YP_005293561.1 COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit YP_005293562.1 COG0681 Signal peptidase I YP_005293563.1 COG0571 dsRNA-specific ribonuclease YP_005293564.1 COG1159 GTPase YP_005293565.1 COG0817 Holliday junction resolvasome, endonuclease subunit YP_005293566.1 COG0565 rRNA methylase YP_005293569.1 COG3660 Predicted nucleoside-diphosphate-sugar epimerase YP_005293570.1 COG0489 ATPases involved in chromosome partitioning YP_005293571.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs YP_005293572.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs YP_005293573.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain YP_005293574.1 COG1054 Predicted sulfurtransferase YP_005293575.1 COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit YP_005293576.1 COG2142 Succinate dehydrogenase, hydrophobic anchor subunit YP_005293577.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YP_005293578.1 COG0765 ABC-type amino acid transport system, permease component YP_005293579.1 COG0048 Ribosomal protein S12 YP_005293580.1 COG0049 Ribosomal protein S7 YP_005293581.1 COG0480 Translation elongation factors (GTPases) YP_005293582.1 COG0690 Preprotein translocase subunit SecE YP_005293583.1 COG0250 Transcription antiterminator YP_005293584.1 COG0080 Ribosomal protein L11 YP_005293585.1 COG0081 Ribosomal protein L1 YP_005293586.1 COG0244 Ribosomal protein L10 YP_005293587.1 COG0222 Ribosomal protein L7/L12 YP_005293588.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit YP_005293589.1 COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit YP_005293591.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit YP_005293592.1 COG0260 Leucyl aminopeptidase YP_005293593.1 COG1192 ATPases involved in chromosome partitioning YP_005293595.1 COG0173 Aspartyl-tRNA synthetase YP_005293597.1 COG0670 Integral membrane protein, interacts with FtsH YP_005293598.1 COG0289 Dihydrodipicolinate reductase YP_005293599.1 COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family YP_005293600.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_005293601.1 COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) YP_005293602.1 COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases YP_005293603.1 COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit YP_005293605.1 COG0233 Ribosome recycling factor YP_005293606.1 COG0528 Uridylate kinase YP_005293607.1 COG1863 Multisubunit Na+/H+ antiporter, MnhE subunit YP_005293608.1 COG0477 Permeases of the major facilitator superfamily YP_005293609.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes YP_005293612.1 COG4775 Outer membrane protein/protective antigen OMA87 YP_005293613.1 COG0750 Predicted membrane-associated Zn-dependent proteases 1 YP_005293614.1 COG0781 Transcription termination factor YP_005293615.1 COG0293 23S rRNA methylase YP_005293618.1 COG2867 Oligoketide cyclase/lipid transport protein YP_005293619.1 COG5508 Uncharacterized conserved small protein YP_005293620.1 COG1385 Uncharacterized protein conserved in bacteria YP_005293621.1 COG2155 Uncharacterized conserved protein YP_005293622.1 COG0841 Cation/multidrug efflux pump YP_005293623.1 COG0776 Bacterial nucleoid DNA-binding protein YP_005293624.1 COG0470 ATPase involved in DNA replication YP_005293625.1 COG0541 Signal recognition particle GTPase YP_005293626.1 COG1505 Serine proteases of the peptidase family S9A YP_005293627.1 COG1505 Serine proteases of the peptidase family S9A YP_005293628.1 COG1505 Serine proteases of the peptidase family S9A YP_005293629.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases YP_005293631.1 COG0666 FOG: Ankyrin repeat YP_005293635.1 COG1301 Na+/H+-dicarboxylate symporters YP_005293636.1 COG1324 Uncharacterized protein involved in tolerance to divalent cations YP_005293637.1 COG0720 6-pyruvoyl-tetrahydropterin synthase YP_005293638.1 COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes YP_005293640.1 COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes YP_005293641.1 COG2317 Zn-dependent carboxypeptidase YP_005293642.1 COG0497 ATPase involved in DNA repair YP_005293643.1 COG4105 DNA uptake lipoprotein YP_005293644.1 COG4572 Putative cation transport regulator YP_005293645.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain YP_005293646.1 COG0443 Molecular chaperone YP_005293647.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain YP_005293648.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_005293651.1 COG1466 DNA polymerase III, delta subunit YP_005293652.1 COG2941 Ubiquinone biosynthesis protein COQ7 YP_005293654.1 COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 YP_005293657.1 COG2171 Tetrahydrodipicolinate N-succinyltransferase YP_005293666.1 COG0451 Nucleoside-diphosphate-sugar epimerases YP_005293667.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins YP_005293668.1 COG2358 TRAP-type uncharacterized transport system, periplasmic component YP_005293670.1 COG0633 Ferredoxin YP_005293671.1 COG0443 Molecular chaperone YP_005293672.1 COG1076 DnaJ-domain-containing proteins 1 YP_005293673.1 COG0164 Ribonuclease HII YP_005293674.1 COG0556 Helicase subunit of the DNA excision repair complex YP_005293675.1 COG0695 Glutaredoxin and related proteins YP_005293676.1 COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components YP_005293679.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit YP_005293683.1 COG1301 Na+/H+-dicarboxylate symporters YP_005293688.1 COG0242 N-formylmethionyl-tRNA deformylase YP_005293689.1 COG0223 Methionyl-tRNA formyltransferase YP_005293691.1 COG4421 Capsular polysaccharide biosynthesis protein YP_005293692.1 COG1485 Predicted ATPase YP_005293693.1 COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) YP_005293694.1 COG0666 FOG: Ankyrin repeat YP_005293697.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005293699.1 COG1271 Cytochrome bd-type quinol oxidase, subunit 1 YP_005293700.1 COG1294 Cytochrome bd-type quinol oxidase, subunit 2 YP_005293701.1 COG2161 Antitoxin of toxin-antitoxin stability system YP_005293702.1 COG4115 Uncharacterized protein conserved in bacteria YP_005293703.1 COG0463 Glycosyltransferases involved in cell wall biogenesis YP_005293704.1 COG0612 Predicted Zn-dependent peptidases YP_005293705.1 COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase YP_005293707.1 COG0441 Threonyl-tRNA synthetase YP_005293709.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005293710.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005293711.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005293717.1 COG1538 Outer membrane protein YP_005293718.1 COG3827 Uncharacterized protein conserved in bacteria YP_005293720.1 COG0666 FOG: Ankyrin repeat YP_005293721.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit YP_005293722.1 COG0793 Periplasmic protease YP_005293723.1 COG0642 Signal transduction histidine kinase YP_005293724.1 COG1729 Uncharacterized protein conserved in bacteria YP_005293726.1 COG1520 FOG: WD40-like repeat YP_005293727.1 COG0102 Ribosomal protein L13 YP_005293728.1 COG0103 Ribosomal protein S9 YP_005293729.1 COG2173 D-alanyl-D-alanine dipeptidase YP_005293730.1 COG2173 D-alanyl-D-alanine dipeptidase YP_005293734.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_005293735.1 COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain YP_005293736.1 COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) YP_005293737.1 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family YP_005293739.1 COG0688 Phosphatidylserine decarboxylase YP_005293740.1 COG1183 Phosphatidylserine synthase YP_005293741.1 COG1566 Multidrug resistance efflux pump YP_005293745.1 COG0271 Stress-induced morphogen (activity unknown) YP_005293746.1 COG2200 FOG: EAL domain YP_005293747.1 COG0773 UDP-N-acetylmuramate-alanine ligase YP_005293748.1 COG0812 UDP-N-acetylmuramate dehydrogenase YP_005293749.1 COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes YP_005293750.1 COG1589 Cell division septal protein YP_005293751.1 COG0849 Actin-like ATPase involved in cell division YP_005293753.1 COG3474 Cytochrome c2 YP_005293755.1 COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase YP_005293757.1 COG1530 Ribonucleases G and E YP_005293758.1 COG1612 Uncharacterized protein required for cytochrome oxidase assembly YP_005293759.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_005293760.1 COG0708 Exonuclease III YP_005293761.1 COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit YP_005293762.1 COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit YP_005293763.1 COG1217 Predicted membrane GTPase involved in stress response YP_005293767.1 COG2825 Outer membrane protein YP_005293768.1 COG0473 Isocitrate/isopropylmalate dehydrogenase YP_005293769.1 COG1320 Multisubunit Na+/H+ antiporter, MnhG subunit YP_005293770.1 COG1563 Predicted subunit of the Multisubunit Na+/H+ antiporter YP_005293773.1 COG0723 Rieske Fe-S protein YP_005293774.1 COG1290 Cytochrome b subunit of the bc complex YP_005293776.1 COG2857 Cytochrome c1 YP_005293777.1 COG3067 Na+/H+ antiporter YP_005293778.1 COG0071 Molecular chaperone (small heat shock protein) YP_005293780.1 COG4804 Uncharacterized conserved protein YP_005293781.1 COG4804 Uncharacterized conserved protein YP_005293782.1 COG1186 Protein chain release factor B YP_005293783.1 COG0481 Membrane GTPase LepA YP_005293786.1 COG3093 Plasmid maintenance system antidote protein YP_005293789.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005293790.1 COG0477 Permeases of the major facilitator superfamily YP_005293791.1 COG0772 Bacterial cell division membrane protein YP_005293792.1 COG1770 Protease II YP_005293793.1 COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit YP_005293794.1 COG1487 Predicted nucleic acid-binding protein, contains PIN domain YP_005293796.1 COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit YP_005293797.1 COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit YP_005293798.1 COG1006 Multisubunit Na+/H+ antiporter, MnhC subunit YP_005293799.1 COG3504 Type IV secretory pathway, VirB9 components YP_005293800.1 COG3736 Type IV secretory pathway, component VirB8 YP_005293802.1 COG3736 Type IV secretory pathway, component VirB8 YP_005293803.1 COG3504 Type IV secretory pathway, VirB9 components YP_005293804.1 COG2948 Type IV secretory pathway, VirB10 components YP_005293805.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis YP_005293806.1 COG3505 Type IV secretory pathway, VirD4 components YP_005293807.1 COG0248 Exopolyphosphatase YP_005293815.1 COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase YP_005293816.1 COG0249 Mismatch repair ATPase (MutS family) YP_005293817.1 COG0698 Ribose 5-phosphate isomerase RpiB YP_005293818.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005293819.1 COG1451 Predicted metal-dependent hydrolase YP_005293820.1 COG1351 Predicted alternative thymidylate synthase YP_005293821.1 COG0823 Periplasmic component of the Tol biopolymer transport system YP_005293822.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) YP_005293823.1 COG3175 Cytochrome oxidase assembly factor YP_005293824.1 COG0457 FOG: TPR repeat YP_005293825.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain YP_005293827.1 COG0531 Amino acid transporters YP_005293828.1 COG0124 Histidyl-tRNA synthetase YP_005293829.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_005293830.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_005293836.1 COG0811 Biopolymer transport proteins YP_005293837.1 COG0848 Biopolymer transport protein YP_005293840.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005293841.1 COG0477 Permeases of the major facilitator superfamily YP_005293842.1 COG0845 Membrane-fusion protein YP_005293843.1 COG4618 ABC-type protease/lipase transport system, ATPase and permease components YP_005293844.1 COG0136 Aspartate-semialdehyde dehydrogenase YP_005293845.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases YP_005293848.1 COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit YP_005293849.1 COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit YP_005293851.1 COG0606 Predicted ATPase with chaperone activity YP_005293852.1 COG0606 Predicted ATPase with chaperone activity YP_005293855.1 COG5464 Uncharacterized conserved protein YP_005293856.1 COG0763 Lipid A disaccharide synthetase YP_005293858.1 COG1559 Predicted periplasmic solute-binding protein YP_005293859.1 COG1965 Protein implicated in iron transport, frataxin homolog YP_005293863.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_005293864.1 COG0550 Topoisomerase IA YP_005293865.1 COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake YP_005293866.1 COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake YP_005293867.1 COG0450 Peroxiredoxin YP_005293868.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs YP_005293869.1 COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_005293870.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase YP_005293871.1 COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) YP_005293872.1 COG3093 Plasmid maintenance system antidote protein YP_005293874.1 COG1091 dTDP-4-dehydrorhamnose reductase YP_005293875.1 COG1086 Predicted nucleoside-diphosphate sugar epimerases YP_005293876.1 COG0381 UDP-N-acetylglucosamine 2-epimerase YP_005293878.1 COG0500 SAM-dependent methyltransferases YP_005293879.1 COG0463 Glycosyltransferases involved in cell wall biogenesis YP_005293880.1 COG0845 Membrane-fusion protein YP_005293882.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) YP_005293883.1 COG0438 Glycosyltransferase YP_005293886.1 COG0522 Ribosomal protein S4 and related proteins YP_005293887.1 COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) YP_005293888.1 COG1533 DNA repair photolyase YP_005293890.1 COG0457 FOG: TPR repeat YP_005293891.1 COG2982 Uncharacterized protein involved in outer membrane biogenesis YP_005293892.1 COG0806 RimM protein, required for 16S rRNA processing YP_005293894.1 COG1722 Exonuclease VII small subunit YP_005293895.1 COG5304 Uncharacterized protein conserved in bacteria YP_005293896.1 COG2094 3-methyladenine DNA glycosylase YP_005293897.1 COG2350 Uncharacterized protein conserved in bacteria YP_005293899.1 COG0759 Uncharacterized conserved protein YP_005293900.1 COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit YP_005293901.1 COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 YP_005293902.1 COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit YP_005293903.1 COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases YP_005293904.1 COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A) YP_005293905.1 COG3307 Lipid A core - O-antigen ligase and related enzymes YP_005293906.1 COG4765 Uncharacterized protein conserved in bacteria YP_005293907.1 COG4974 Site-specific recombinase XerD YP_005293910.1 COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) YP_005293911.1 COG0815 Apolipoprotein N-acyltransferase YP_005293913.1 COG3023 Negative regulator of beta-lactamase expression YP_005293914.1 COG2984 ABC-type uncharacterized transport system, periplasmic component YP_005293915.1 COG4120 ABC-type uncharacterized transport system, permease component YP_005293916.1 COG1101 ABC-type uncharacterized transport system, ATPase component YP_005293918.1 COG0666 FOG: Ankyrin repeat YP_005293922.1 COG1495 Disulfide bond formation protein DsbB YP_005293923.1 COG1384 Lysyl-tRNA synthetase (class I) YP_005293924.1 COG0679 Predicted permeases YP_005293925.1 COG0281 Malic enzyme YP_005293928.1 COG4374 Uncharacterized protein conserved in bacteria YP_005293929.1 COG2002 Regulators of stationary/sporulation gene expression YP_005293930.1 COG0477 Permeases of the major facilitator superfamily YP_005293934.1 COG0541 Signal recognition particle GTPase YP_005293937.1 COG0039 Malate/lactate dehydrogenases YP_005293938.1 COG0666 FOG: Ankyrin repeat YP_005293939.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit YP_005293941.1 COG3202 ATP/ADP translocase YP_005293942.1 COG0504 CTP synthase (UTP-ammonia lyase) YP_005293943.1 COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase YP_005293947.1 COG0302 GTP cyclohydrolase I YP_005293948.1 COG0442 Prolyl-tRNA synthetase YP_005293949.1 COG3177 Uncharacterized conserved protein YP_005293951.1 COG0632 Holliday junction resolvasome, DNA-binding subunit YP_005293954.1 COG2255 Holliday junction resolvasome, helicase subunit YP_005293955.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005293956.1 COG0477 Permeases of the major facilitator superfamily YP_005293957.1 COG1686 D-alanyl-D-alanine carboxypeptidase YP_005293958.1 COG0797 Lipoproteins YP_005293959.1 COG2823 Predicted periplasmic or secreted lipoprotein YP_005293960.1 COG2917 Intracellular septation protein A YP_005293961.1 COG0672 High-affinity Fe2+/Pb2+ permease YP_005293963.1 COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 YP_005293964.1 COG3485 Protocatechuate 3,4-dioxygenase beta subunit YP_005293965.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_005293966.1 COG0616 Periplasmic serine proteases (ClpP class) YP_005293967.1 COG0756 dUTPase YP_005293968.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YP_005293970.1 COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF YP_005293971.1 COG2887 RecB family exonuclease YP_005293973.1 COG2071 Predicted glutamine amidotransferases YP_005293974.1 COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 YP_005293975.1 COG0110 Acetyltransferase (isoleucine patch superfamily) YP_005293976.1 COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 YP_005293977.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005293978.1 COG0597 Lipoprotein signal peptidase YP_005293980.1 COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase YP_005293981.1 COG0772 Bacterial cell division membrane protein YP_005293982.1 COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase YP_005293988.1 COG0841 Cation/multidrug efflux pump YP_005293989.1 COG0841 Cation/multidrug efflux pump YP_005293990.1 COG0841 Cation/multidrug efflux pump YP_005293991.1 COG0841 Cation/multidrug efflux pump YP_005293992.1 COG0841 Cation/multidrug efflux pump YP_005293994.1 COG0438 Glycosyltransferase YP_005293998.1 COG0253 Diaminopimelate epimerase YP_005293999.1 COG0621 2-methylthioadenine synthetase YP_005294000.1 COG0016 Phenylalanyl-tRNA synthetase alpha subunit YP_005294001.1 COG0073 EMAP domain YP_005294002.1 COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) YP_005294006.1 COG0495 Leucyl-tRNA synthetase YP_005294007.1 COG0349 Ribonuclease D YP_005294008.1 COG2919 Septum formation initiator YP_005294009.1 COG0575 CDP-diglyceride synthetase YP_005294010.1 COG0020 Undecaprenyl pyrophosphate synthase YP_005294011.1 COG0642 Signal transduction histidine kinase YP_005294012.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005294013.1 COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase YP_005294014.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase YP_005294015.1 COG0691 tmRNA-binding protein YP_005294016.1 COG1651 Protein-disulfide isomerase YP_005294017.1 COG0074 Succinyl-CoA synthetase, alpha subunit YP_005294018.1 COG0045 Succinyl-CoA synthetase, beta subunit YP_005294019.1 COG2002 Regulators of stationary/sporulation gene expression YP_005294022.1 COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases YP_005294023.1 COG4395 Uncharacterized protein conserved in bacteria YP_005294024.1 COG1835 Predicted acyltransferases YP_005294025.1 COG1835 Predicted acyltransferases YP_005294026.1 COG0858 Ribosome-binding factor A YP_005294027.1 COG1238 Predicted membrane protein YP_005294028.1 COG1714 Predicted membrane protein/domain YP_005294029.1 COG0353 Recombinational DNA repair protein (RecF pathway) YP_005294035.1 COG0061 Predicted sugar kinase YP_005294036.1 COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily YP_005294037.1 COG0240 Glycerol-3-phosphate dehydrogenase YP_005294038.1 COG0679 Predicted permeases YP_005294039.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) YP_005294040.1 COG0492 Thioredoxin reductase YP_005294044.1 COG1012 NAD-dependent aldehyde dehydrogenases YP_005294045.1 COG0463 Glycosyltransferases involved in cell wall biogenesis YP_005294046.1 COG0210 Superfamily I DNA and RNA helicases YP_005294049.1 COG1171 Threonine dehydratase YP_005294050.1 COG0466 ATP-dependent Lon protease, bacterial type YP_005294056.1 COG1544 Ribosome-associated protein Y (PSrp-1) YP_005294057.1 COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase YP_005294058.1 COG0492 Thioredoxin reductase YP_005294059.1 COG5430 Uncharacterized secreted protein YP_005294060.1 COG3121 P pilus assembly protein, chaperone PapD YP_005294061.1 COG0045 Succinyl-CoA synthetase, beta subunit YP_005294063.1 COG5430 Uncharacterized secreted protein YP_005294066.1 COG0209 Ribonucleotide reductase, alpha subunit YP_005294068.1 COG0208 Ribonucleotide reductase, beta subunit YP_005294069.1 COG1357 Uncharacterized low-complexity proteins YP_005294070.1 COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase YP_005294072.1 COG1109 Phosphomannomutase YP_005294073.1 COG1137 ABC-type (unclassified) transport system, ATPase component YP_005294074.1 COG1934 Uncharacterized protein conserved in bacteria YP_005294075.1 COG5375 Uncharacterized protein conserved in bacteria YP_005294076.1 COG0794 Predicted sugar phosphate isomerase involved in capsule formation YP_005294077.1 COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) YP_005294078.1 COG0184 Ribosomal protein S15P/S13E YP_005294079.1 COG0130 Pseudouridine synthase YP_005294080.1 COG3202 ATP/ADP translocase YP_005294081.1 COG0460 Homoserine dehydrogenase YP_005294082.1 COG1396 Predicted transcriptional regulators YP_005294083.1 COG1295 Predicted membrane protein YP_005294084.1 COG0174 Glutamine synthetase YP_005294085.1 COG1496 Uncharacterized conserved protein YP_005294086.1 COG0242 N-formylmethionyl-tRNA deformylase YP_005294090.1 COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase YP_005294091.1 COG0625 Glutathione S-transferase YP_005294092.1 COG4285 Uncharacterized conserved protein YP_005294093.1 COG1268 Uncharacterized conserved protein YP_005294094.1 COG0285 Folylpolyglutamate synthase YP_005294095.1 COG0605 Superoxide dismutase YP_005294096.1 COG0340 Biotin-(acetyl-CoA carboxylase) ligase YP_005294097.1 COG5448 Uncharacterized conserved protein YP_005294099.1 COG5449 Uncharacterized conserved protein YP_005294101.1 COG5346 Predicted membrane protein YP_005294102.1 COG0290 Translation initiation factor 3 (IF-3) YP_005294103.1 COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes YP_005294104.1 COG0216 Protein chain release factor A YP_005294105.1 COG0608 Single-stranded DNA-specific exonuclease YP_005294106.1 COG0500 SAM-dependent methyltransferases YP_005294107.1 COG1158 Transcription termination factor YP_005294108.1 COG0616 Periplasmic serine proteases (ClpP class) YP_005294109.1 COG0776 Bacterial nucleoid DNA-binding protein YP_005294113.1 COG3022 Uncharacterized protein conserved in bacteria YP_005294118.1 COG1373 Predicted ATPase (AAA+ superfamily) YP_005294120.1 COG0180 Tryptophanyl-tRNA synthetase YP_005294121.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_005294122.1 COG5622 Protein required for attachment to host cells YP_005294124.1 COG3077 DNA-damage-inducible protein J YP_005294125.1 COG2945 Predicted hydrolase of the alpha/beta superfamily YP_005294126.1 COG2956 Predicted N-acetylglucosaminyl transferase YP_005294128.1 COG1587 Uroporphyrinogen-III synthase YP_005294129.1 COG1279 Lysine efflux permease YP_005294131.1 COG0477 Permeases of the major facilitator superfamily YP_005294134.1 COG3202 ATP/ADP translocase YP_005294136.1 COG0142 Geranylgeranyl pyrophosphate synthase YP_005294137.1 COG0006 Xaa-Pro aminopeptidase YP_005294138.1 COG0531 Amino acid transporters YP_005294139.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005294141.1 COG0316 Uncharacterized conserved protein YP_005294142.1 COG0822 NifU homolog involved in Fe-S cluster formation YP_005294143.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes YP_005294144.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes YP_005294145.1 COG1959 Predicted transcriptional regulator YP_005294151.1 COG4804 Uncharacterized conserved protein YP_005294152.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases YP_005294154.1 COG5628 Predicted acetyltransferase YP_005294155.1 COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases YP_005294156.1 COG0740 Protease subunit of ATP-dependent Clp proteases YP_005294157.1 COG0539 Ribosomal protein S1 YP_005294158.1 COG0283 Cytidylate kinase YP_005294159.1 COG1396 Predicted transcriptional regulators YP_005294167.1 COG1373 Predicted ATPase (AAA+ superfamily) YP_005294169.1 COG0181 Porphobilinogen deaminase YP_005294170.1 COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF YP_005294171.1 COG0642 Signal transduction histidine kinase YP_005294172.1 COG0642 Signal transduction histidine kinase YP_005294173.1 COG0666 FOG: Ankyrin repeat YP_005294175.1 COG0354 Predicted aminomethyltransferase related to GcvT YP_005294176.1 COG1723 Uncharacterized conserved protein YP_005294177.1 COG0349 Ribonuclease D YP_005294179.1 COG0212 5-formyltetrahydrofolate cyclo-ligase YP_005294180.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes YP_005294181.1 COG0500 SAM-dependent methyltransferases YP_005294183.1 COG0338 Site-specific DNA methylase YP_005294187.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YP_005294190.1 COG0217 Uncharacterized conserved protein YP_005294191.1 COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) YP_005294195.1 COG1694 Predicted pyrophosphatase YP_005294196.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases YP_005294198.1 COG0714 MoxR-like ATPases YP_005294202.1 COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) YP_005294204.1 COG0113 Delta-aminolevulinic acid dehydratase YP_005294208.1 COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase YP_005294209.1 COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase YP_005294211.1 COG0305 Replicative DNA helicase YP_005294213.1 COG0814 Amino acid permeases YP_005294215.1 COG0814 Amino acid permeases YP_005294216.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases YP_005294217.1 COG1357 Uncharacterized low-complexity proteins YP_005294218.1 COG0742 N6-adenine-specific methylase YP_005294219.1 COG1066 Predicted ATP-dependent serine protease YP_005294220.1 COG0191 Fructose/tagatose bisphosphate aldolase YP_005294221.1 COG1381 Recombinational DNA repair protein (RecF pathway) YP_005294223.1 COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone YP_005294225.1 COG0532 Translation initiation factor 2 (IF-2; GTPase) YP_005294226.1 COG0195 Transcription elongation factor YP_005294227.1 COG0779 Uncharacterized protein conserved in bacteria YP_005294230.1 COG1959 Predicted transcriptional regulator YP_005294231.1 COG1189 Predicted rRNA methylase YP_005294232.1 COG0162 Tyrosyl-tRNA synthetase YP_005294234.1 COG5304 Uncharacterized protein conserved in bacteria YP_005294237.1 COG3547 Transposase and inactivated derivatives YP_005294240.1 COG2271 Sugar phosphate permease YP_005294241.1 COG0477 Permeases of the major facilitator superfamily YP_005294242.1 COG1250 3-hydroxyacyl-CoA dehydrogenase YP_005294243.1 COG1040 Predicted amidophosphoribosyltransferases YP_005294249.1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases YP_005294250.1 COG2212 Multisubunit Na+/H+ antiporter, MnhF subunit YP_005294251.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains YP_005294252.1 COG1357 Uncharacterized low-complexity proteins YP_005294254.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_005294256.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_005294258.1 COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis YP_005294259.1 COG2001 Uncharacterized protein conserved in bacteria YP_005294260.1 COG0591 Na+/proline symporter YP_005294262.1 COG0322 Nuclease subunit of the excinuclease complex YP_005294263.1 COG2847 Uncharacterized protein conserved in bacteria YP_005294264.1 COG4912 Predicted DNA alkylation repair enzyme YP_005294265.1 COG0350 Methylated DNA-protein cysteine methyltransferase YP_005294266.1 COG0350 Methylated DNA-protein cysteine methyltransferase YP_005294267.1 COG2169 Adenosine deaminase YP_005294268.1 COG2169 Adenosine deaminase YP_005294269.1 COG0350 Methylated DNA-protein cysteine methyltransferase YP_005294276.1 COG0666 FOG: Ankyrin repeat YP_005294277.1 COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) YP_005294278.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_005294279.1 COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) YP_005294280.1 COG1758 DNA-directed RNA polymerase, subunit K/omega YP_005294281.1 COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase YP_005294282.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit YP_005294283.1 COG0647 Predicted sugar phosphatases of the HAD superfamily YP_005294284.1 COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) YP_005294286.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005294291.1 COG4710 Predicted DNA-binding protein with an HTH domain YP_005294293.1 COG1862 Preprotein translocase subunit YajC YP_005294294.1 COG0342 Preprotein translocase subunit SecD YP_005294295.1 COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems YP_005294296.1 COG2332 Cytochrome c-type biogenesis protein CcmE YP_005294297.1 COG0221 Inorganic pyrophosphatase YP_005294298.1 COG0728 Uncharacterized membrane protein, putative virulence factor YP_005294301.1 COG1200 RecG-like helicase YP_005294302.1 COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit YP_005294303.1 COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit YP_005294304.1 COG0655 Multimeric flavodoxin WrbA YP_005294305.1 COG0655 Multimeric flavodoxin WrbA YP_005294307.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_005294308.1 COG0770 UDP-N-acetylmuramyl pentapeptide synthase YP_005294309.1 COG0769 UDP-N-acetylmuramyl tripeptide synthase YP_005294310.1 COG1197 Transcription-repair coupling factor (superfamily II helicase) YP_005294311.1 COG2938 Uncharacterized conserved protein YP_005294312.1 COG0607 Rhodanese-related sulfurtransferase YP_005294313.1 COG0593 ATPase involved in DNA replication initiation YP_005294320.1 COG3621 Patatin YP_005294323.1 COG0477 Permeases of the major facilitator superfamily YP_005294325.1 COG1708 Predicted nucleotidyltransferases YP_005294326.1 COG0012 Predicted GTPase, probable translation factor YP_005294327.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases YP_005294329.1 COG0193 Peptidyl-tRNA hydrolase YP_005294330.1 COG1825 Ribosomal protein L25 (general stress protein Ctc) YP_005294331.1 COG0602 Organic radical activating enzymes YP_005294332.1 COG0291 Ribosomal protein L35 YP_005294333.1 COG0292 Ribosomal protein L20 YP_005294334.1 COG0230 Ribosomal protein L34 YP_005294337.1 COG1471 Ribosomal protein S4E YP_005294340.1 COG0598 Mg2+ and Co2+ transporters YP_005294342.1 COG3173 Predicted aminoglycoside phosphotransferase YP_005294343.1 COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation YP_005294345.1 COG0828 Ribosomal protein S21 YP_005294346.1 COG5590 Uncharacterized conserved protein YP_005294349.1 COG0060 Isoleucyl-tRNA synthetase YP_005294352.1 COG1729 Uncharacterized protein conserved in bacteria YP_005294354.1 COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit YP_005294355.1 COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) YP_005294357.1 COG0477 Permeases of the major facilitator superfamily YP_005294359.1 COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components YP_005294360.1 COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase YP_005294361.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_005294362.1 COG5342 Invasion protein B, involved in pathogenesis YP_005294364.1 COG0459 Chaperonin GroEL (HSP60 family) YP_005294365.1 COG0234 Co-chaperonin GroES (HSP10) YP_005294368.1 COG0689 RNase PH YP_005294369.1 COG0576 Molecular chaperone GrpE (heat shock protein) YP_005294370.1 COG0628 Predicted permease YP_005294371.1 COG0593 ATPase involved in DNA replication initiation YP_005294372.1 COG0477 Permeases of the major facilitator superfamily YP_005294376.1 COG0477 Permeases of the major facilitator superfamily YP_005294378.1 COG0268 Ribosomal protein S20 YP_005294379.1 COG0203 Ribosomal protein L17 YP_005294380.1 COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit YP_005294381.1 COG0100 Ribosomal protein S11 YP_005294382.1 COG0099 Ribosomal protein S13 YP_005294383.1 COG0563 Adenylate kinase and related kinases YP_005294384.1 COG0201 Preprotein translocase subunit SecY YP_005294385.1 COG0200 Ribosomal protein L15 YP_005294386.1 COG1841 Ribosomal protein L30/L7E YP_005294387.1 COG0098 Ribosomal protein S5 YP_005294388.1 COG0256 Ribosomal protein L18 YP_005294389.1 COG0097 Ribosomal protein L6P/L9E YP_005294390.1 COG0096 Ribosomal protein S8 YP_005294391.1 COG0199 Ribosomal protein S14 YP_005294392.1 COG0094 Ribosomal protein L5 YP_005294393.1 COG0198 Ribosomal protein L24 YP_005294394.1 COG0093 Ribosomal protein L14 YP_005294395.1 COG0186 Ribosomal protein S17 YP_005294396.1 COG0255 Ribosomal protein L29 YP_005294397.1 COG0197 Ribosomal protein L16/L10E YP_005294398.1 COG0092 Ribosomal protein S3 YP_005294399.1 COG0091 Ribosomal protein L22 YP_005294400.1 COG0185 Ribosomal protein S19 YP_005294401.1 COG0090 Ribosomal protein L2 YP_005294402.1 COG0089 Ribosomal protein L23 YP_005294403.1 COG0088 Ribosomal protein L4 YP_005294404.1 COG0087 Ribosomal protein L3 YP_005294405.1 COG0051 Ribosomal protein S10 YP_005294407.1 COG0050 GTPases - translation elongation factors YP_005294408.1 COG0566 rRNA methylases YP_005294410.1 COG0114 Fumarase YP_005294411.1 COG4118 Antitoxin of toxin-antitoxin stability system YP_005294413.1 COG0206 Cell division GTPase YP_005294415.1 COG4574 Serine protease inhibitor ecotin YP_005294416.1 COG0694 Thioredoxin-like proteins and domains YP_005294417.1 COG0477 Permeases of the major facilitator superfamily YP_005294418.1 COG0513 Superfamily II DNA and RNA helicases YP_005294419.1 COG1278 Cold shock proteins YP_005294420.1 COG0030 Dimethyladenosine transferase (rRNA methylation) YP_005294421.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_005294422.1 COG1452 Organic solvent tolerance protein OstA YP_005294423.1 COG1570 Exonuclease VII, large subunit YP_005294424.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_005294426.1 COG0708 Exonuclease III YP_005294427.1 COG4095 Uncharacterized conserved protein YP_005294428.1 COG1160 Predicted GTPases YP_005294429.1 COG1373 Predicted ATPase (AAA+ superfamily) YP_005294432.1 COG0661 Predicted unusual protein kinase YP_005294433.1 COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis YP_005294434.1 COG0266 Formamidopyrimidine-DNA glycosylase YP_005294435.1 COG0836 Mannose-1-phosphate guanylyltransferase YP_005294439.1 COG2958 Uncharacterized protein conserved in bacteria YP_005294442.1 COG2958 Uncharacterized protein conserved in bacteria YP_005294443.1 COG0084 Mg-dependent DNase YP_005294444.1 COG0143 Methionyl-tRNA synthetase YP_005294445.1 COG0125 Thymidylate kinase YP_005294446.1 COG0477 Permeases of the major facilitator superfamily YP_005294447.1 COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases YP_005294448.1 COG0525 Valyl-tRNA synthetase YP_005294449.1 COG3475 LPS biosynthesis protein YP_005294450.1 COG3475 LPS biosynthesis protein YP_005294451.1 COG1322 Uncharacterized protein conserved in bacteria YP_005294455.1 COG1219 ATP-dependent protease Clp, ATPase subunit YP_005294456.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins YP_005294457.1 COG0603 Predicted PP-loop superfamily ATPase YP_005294458.1 COG1598 Uncharacterized conserved protein YP_005294460.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005294462.1 COG0477 Permeases of the major facilitator superfamily YP_005294463.1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component YP_005294464.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_005294467.1 COG4536 Putative Mg2+ and Co2+ transporter CorB YP_005294468.1 COG1138 Cytochrome c biogenesis factor YP_005294470.1 COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain YP_005294471.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005294472.1 COG1472 Beta-glucosidase-related glycosidases YP_005294473.1 COG0789 Predicted transcriptional regulators YP_005294474.1 COG0776 Bacterial nucleoid DNA-binding protein YP_005294476.1 COG1225 Peroxiredoxin YP_005294477.1 COG1560 Lauroyl/myristoyl acyltransferase YP_005294478.1 COG1663 Tetraacyldisaccharide-1-P 4'-kinase YP_005294479.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005294480.1 COG2961 Protein involved in catabolism of external DNA YP_005294481.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) YP_005294483.1 COG0343 Queuine/archaeosine tRNA-ribosyltransferase YP_005294484.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005294486.1 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component YP_005294487.1 COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit YP_005294488.1 COG0328 Ribonuclease HI YP_005294489.1 COG3814 Uncharacterized protein conserved in bacteria YP_005294490.1 COG3494 Uncharacterized protein conserved in bacteria YP_005294491.1 COG0237 Dephospho-CoA kinase YP_005294492.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases YP_005294493.1 COG3346 Uncharacterized conserved protein YP_005294494.1 COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) YP_005294497.1 COG0331 (acyl-carrier-protein) S-malonyltransferase YP_005294506.1 COG3243 Poly(3-hydroxyalkanoate) synthetase YP_005294507.1 COG3202 ATP/ADP translocase YP_005294508.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_005294509.1 COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance YP_005294510.1 COG1253 Hemolysins and related proteins containing CBS domains YP_005294511.1 COG0319 Predicted metal-dependent hydrolase YP_005294514.1 COG0320 Lipoate synthase YP_005294515.1 COG0112 Glycine/serine hydroxymethyltransferase YP_005294516.1 COG0400 Predicted esterase YP_005294517.1 COG0278 Glutaredoxin-related protein YP_005294518.1 COG0177 Predicted EndoIII-related endonuclease YP_005294522.1 COG5510 Predicted small secreted protein YP_005294525.1 COG0313 Predicted methyltransferases YP_005294526.1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component YP_005294527.1 COG1826 Sec-independent protein secretion pathway components YP_005294528.1 COG1267 Phosphatidylglycerophosphatase A and related proteins YP_005294529.1 COG0261 Ribosomal protein L21 YP_005294530.1 COG0211 Ribosomal protein L27 YP_005294531.1 COG0527 Aspartokinases YP_005294532.1 COG1396 Predicted transcriptional regulators YP_005294534.1 COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold YP_005294538.1 COG0477 Permeases of the major facilitator superfamily YP_005294539.1 COG3027 Uncharacterized protein conserved in bacteria YP_005294540.1 COG0419 ATPase involved in DNA repair YP_005294541.1 COG1426 Uncharacterized protein conserved in bacteria YP_005294542.1 COG2902 NAD-specific glutamate dehydrogenase YP_005294543.1 COG0486 Predicted GTPase YP_005294545.1 COG0477 Permeases of the major facilitator superfamily YP_005294547.1 COG0468 RecA/RadA recombinase YP_005294548.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005294549.1 COG0236 Acyl carrier protein YP_005294550.1 COG0304 3-oxoacyl-(acyl-carrier-protein) synthase YP_005294551.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_005294554.1 COG1373 Predicted ATPase (AAA+ superfamily) YP_005294555.1 COG0194 Guanylate kinase YP_005294556.1 COG1396 Predicted transcriptional regulators YP_005294557.1 COG1792 Cell shape-determining protein YP_005294558.1 COG1077 Actin-like ATPase involved in cell morphogenesis YP_005294559.1 COG0795 Predicted permeases YP_005294560.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins YP_005294562.1 COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III YP_005294563.1 COG0333 Ribosomal protein L32 YP_005294564.1 COG2913 Small protein A (tmRNA-binding) YP_005294565.1 COG0552 Signal recognition particle GTPase YP_005294566.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI) YP_005294567.1 COG0192 S-adenosylmethionine synthetase YP_005294568.1 COG0192 S-adenosylmethionine synthetase YP_005294569.1 COG0192 S-adenosylmethionine synthetase YP_005294573.1 COG0587 DNA polymerase III, alpha subunit YP_005294574.1 COG1004 Predicted UDP-glucose 6-dehydrogenase YP_005294576.1 COG0477 Permeases of the major facilitator superfamily YP_005294577.1 COG0805 Sec-independent protein secretion pathway component TatC YP_005294578.1 COG0172 Seryl-tRNA synthetase YP_005294580.1 COG3451 Type IV secretory pathway, VirB4 components YP_005294582.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance YP_005294583.1 COG3637 Opacity protein and related surface antigens YP_005294584.1 COG0500 SAM-dependent methyltransferases YP_005294586.1 COG2944 Predicted transcriptional regulator YP_005294587.1 COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) YP_005294588.1 COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) YP_005294589.1 COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit YP_005294590.1 COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) YP_005294591.1 COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component YP_005294592.1 COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) YP_005294593.1 COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) YP_005294594.1 COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) YP_005294595.1 COG3671 Predicted membrane protein YP_005294596.1 COG1048 Aconitase A YP_005294597.1 COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) YP_005294598.1 COG0055 F0F1-type ATP synthase, beta subunit YP_005294599.1 COG0224 F0F1-type ATP synthase, gamma subunit YP_005294600.1 COG0056 F0F1-type ATP synthase, alpha subunit YP_005294601.1 COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) YP_005294602.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes YP_005294603.1 COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) YP_005294605.1 COG2602 Beta-lactamase class D YP_005294606.1 COG2602 Beta-lactamase class D YP_005294607.1 COG5009 Membrane carboxypeptidase/penicillin-binding protein YP_005294608.1 COG0621 2-methylthioadenine synthetase YP_005294614.1 COG3807 Uncharacterized protein conserved in bacteria YP_005294615.1 COG0475 Kef-type K+ transport systems, membrane components YP_005294616.1 COG0799 Uncharacterized homolog of plant Iojap protein YP_005294617.1 COG0271 Stress-induced morphogen (activity unknown) YP_005294620.1 COG3209 Rhs family protein YP_005294626.1 COG0361 Translation initiation factor 1 (IF-1) YP_005294627.1 COG0424 Nucleotide-binding protein implicated in inhibition of septum formation YP_005294628.1 COG1734 DnaK suppressor protein YP_005294629.1 COG0582 Integrase YP_005294631.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes YP_005294633.1 COG3243 Poly(3-hydroxyalkanoate) synthetase YP_005294634.1 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases YP_005294635.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_005294637.1 COG1140 Nitrate reductase beta subunit YP_005294638.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins YP_005294639.1 COG1835 Predicted acyltransferases YP_005294640.1 COG0024 Methionine aminopeptidase YP_005294641.1 COG2003 DNA repair proteins YP_005294642.1 COG2003 DNA repair proteins YP_005294643.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_005294645.1 COG3637 Opacity protein and related surface antigens YP_005294646.1 COG3637 Opacity protein and related surface antigens YP_005294647.1 COG1146 Ferredoxin YP_005294648.1 COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component YP_005294649.1 COG0590 Cytosine/adenosine deaminases YP_005294650.1 COG0053 Predicted Co/Zn/Cd cation transporters YP_005294651.1 COG4520 Surface antigen YP_005294652.1 COG1881 Phospholipid-binding protein YP_005294653.1 COG1121 ABC-type Mn/Zn transport systems, ATPase component YP_005294657.1 COG0178 Excinuclease ATPase subunit YP_005294658.1 COG0629 Single-stranded DNA-binding protein YP_005294661.1 COG3772 Phage-related lysozyme (muraminidase) YP_005294663.1 COG1872 Uncharacterized conserved protein YP_005294664.1 COG0326 Molecular chaperone, HSP90 family YP_005294665.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes YP_005294668.1 COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) YP_005294669.1 COG0536 Predicted GTPase YP_005294670.1 COG0372 Citrate synthase YP_005294672.1 COG1573 Uracil-DNA glycosylase YP_005294673.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_005294676.1 COG2890 Methylase of polypeptide chain release factors YP_005294677.1 COG0009 Putative translation factor (SUA5) YP_005294678.1 COG0751 Glycyl-tRNA synthetase, beta subunit YP_005294679.1 COG0752 Glycyl-tRNA synthetase, alpha subunit YP_005294680.1 COG1487 Predicted nucleic acid-binding protein, contains PIN domain YP_005294681.1 COG2161 Antitoxin of toxin-antitoxin stability system YP_005294682.1 COG1636 Uncharacterized protein conserved in bacteria YP_005294684.1 COG1474 Cdc6-related protein, AAA superfamily ATPase YP_005294686.1 COG0013 Alanyl-tRNA synthetase YP_005294687.1 COG0101 Pseudouridylate synthase YP_005294688.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) YP_005294689.1 COG0358 DNA primase (bacterial type) YP_005294690.1 COG0170 Dolichol kinase YP_005294691.1 COG0782 Transcription elongation factor YP_005294692.1 COG3288 NAD/NADP transhydrogenase alpha subunit YP_005294693.1 COG3288 NAD/NADP transhydrogenase alpha subunit YP_005294694.1 COG2834 Outer membrane lipoprotein-sorting protein YP_005294695.1 COG2812 DNA polymerase III, gamma/tau subunits YP_005294696.1 COG0718 Uncharacterized protein conserved in bacteria YP_005294699.1 COG3577 Predicted aspartyl protease YP_005294705.1 COG2161 Antitoxin of toxin-antitoxin stability system YP_005294706.1 COG1126 ABC-type polar amino acid transport system, ATPase component YP_005294707.1 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I YP_005294708.1 COG0671 Membrane-associated phospholipid phosphatase YP_005294709.1 COG3077 DNA-damage-inducible protein J YP_005294710.1 COG3041 Uncharacterized protein conserved in bacteria YP_005294711.1 COG0795 Predicted permeases YP_005294712.1 COG2927 DNA polymerase III, chi subunit YP_005294714.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases YP_005294715.1 COG0732 Restriction endonuclease S subunits YP_005294717.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_005294722.1 COG3004 Na+/H+ antiporter YP_005294723.1 COG1434 Uncharacterized conserved protein YP_005294724.1 COG0321 Lipoate-protein ligase B YP_005294725.1 COG3023 Negative regulator of beta-lactamase expression YP_005294726.1 COG0228 Ribosomal protein S16 YP_005294727.1 COG0267 Ribosomal protein L33 YP_005294728.1 COG0323 DNA mismatch repair enzyme (predicted ATPase) YP_005294730.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005294732.1 COG0457 FOG: TPR repeat YP_005294733.1 COG0477 Permeases of the major facilitator superfamily YP_005294734.1 COG0408 Coproporphyrinogen III oxidase YP_005294735.1 COG1981 Predicted membrane protein YP_005294736.1 COG0276 Protoheme ferro-lyase (ferrochelatase) YP_005294737.1 COG0407 Uroporphyrinogen-III decarboxylase