-- dump date   	20140620_045652
-- class       	Genbank::Gene
-- table       	gene_note
-- id	note
439851000002	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784
439851000003	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851000006	YacC; this gene contains a frame shift which may be the result of sequencing error
439851000008	YadA; this gene contains a frame shift which may be the result of sequencing error
439851000018	lysozyme (Lysis protein) (Muramidase) (Endolysin)(Morphogenesis protein 2); this gene contains a frame shift which may be the result of sequencing error
439851000021	65 kDa virulence protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03534
439851000027	transposase, IS605 family; this gene contains a frame shift which may be the result of sequencing error
439851000028	invasin; this gene contains a frame shift which may be the result of sequencing error
439851000029	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851000058	IS66 family element; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01527
439851000059	ISSfl4 ORF2; this gene contains a frame shift which may be the result of sequencing error
439851000060	ISSfl4 ORF3; this region contains one or more premature stops and/or frameshifts
439851000067	conserved domain protein; this gene contains a frame shift which may be the result of sequencing error
439851000069	phospholipase D (PLD) family protein; this gene contains a frame shift which may be the result of sequencing error
439851000070	endonuclease; this gene contains a frame shift which may be the result of sequencing error
439851000081	Abi family protein; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF07751
439851000083	H-NS histone family protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00816
439851000091	pilx11 protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00437
439851000150	BcfH; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01323
439851000151	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851000166	sodium galactoside symporter; this gene contains a premature stop which may be the result of sequencing error
439851000167	xylose-proton symporter; this gene contains a premature stop which may be the result of sequencing error
439851000176	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
439851000195	transcriptional activatory protein CaiF; this gene contains a frame shift which may be the result of sequencing error
439851000225	cytoplasmic protein; this gene contains a premature stop which may be the result of sequencing error
439851000262	secretion monitor protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF06558
439851000339	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851000388	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851000408	type VI secretion protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF05947
439851000429	Rhs-family protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03527; match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643
439851000431	Rhs-family protein; this gene contains a frame shift which may be the result of sequencing error
439851000440	cytoplasmic protein; this gene contains a premature stop which may be the result of sequencing error
439851000443	transposase B; this gene contains a frame shift which may be the result of sequencing error
439851000446	gram-negative pili assembly chaperone; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00345
439851000456	acyl-coenzyme A dehydrogenase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00441; match to protein family HMM PF09317
439851000469	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851000475	glycerol dehydratase reactivation factor large subunit; this gene contains a frame shift which may be the result of sequencing error
439851000490	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851000515	propionate catabolism operon regulatory protein PrpR; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00158; match to protein family HMM PF02954
439851000516	propionate catabolism operon regulatory protein PrpR; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF06506
439851000525	inner membrane protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00027
439851000534	major facilitator superfamily MFS_1; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF07690
439851000556	maltodextrin glucosidase (Alpha-glucosidase); this gene contains a premature stop which may be the result of sequencing error
439851000567	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851000602	lipoprotein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03923
439851000613	bacterial extracellular solute-binding proteins, family 5; this gene contains a premature stop which may be the result of sequencing error
439851000614	bacterial extracellular solute-binding protein, family 5; this gene contains a premature stop which may be the result of sequencing error
439851000706	fimbrial protein internal segment; this gene contains a premature stop which may be the result of sequencing error
439851000707	FimI; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00419
439851000728	conserved domain protein; this gene contains a premature stop which may be the result of sequencing error
439851000771	ISEhe3, transposase OrfA; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01527
439851000776	sensor kinase CusS; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF02518
439851000786	outer membrane esterase; this gene contains a frame shift which may be the result of sequencing error
439851000787	lipase 1 (Triacylglycerol lipase); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414
439851000812	iron-containing alcohol dehydrogenase; this gene contains a frame shift which may be the result of sequencing error
439851000819	alkyl hydroperoxide reductase subunit F; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR03140
439851000821	molybdopterin-containing oxidoreductase catalytic subunit; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00384; match to protein family HMM PF01568
439851000825	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
439851000828	ribonuclease I (Enterobacter ribonuclease)(RNase I); this gene contains a frame shift which may be the result of sequencing error
439851000829	ribonuclease I (Enterobacter ribonuclease)(RNase I); this gene contains a frame shift which may be the result of sequencing error
439851000830	sodium:sulfate symporter family protein; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785
439851000838	sensor kinase DpiB (Sensor kinase citA); this gene contains a frame shift which may be the result of sequencing error
439851000839	sensor kinase CitA; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00072; match to protein family HMM PF02518
439851000857	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851000867	sigma-54 dependent transcriptional regulator; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF06506
439851000868	acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme); this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00158
439851000905	outer membrane porin, OprD family; this gene contains a frame shift which may be the result of sequencing error
439851000906	porin D; this gene contains a frame shift which may be the result of sequencing error
439851001016	inner membrane protein; this gene contains a frame shift which may be the result of sequencing error
439851001017	inner membrane protein; this gene contains a frame shift which may be the result of sequencing error
439851001049	inner membrane protein; this gene contains a frame shift which may be the result of sequencing error
439851001051	sugar phosphatase SupH; this gene contains a premature stop which may be the result of sequencing error
439851001070	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851001238	ISAfe4, transposase Orf3; this gene contains a frame shift which may be the result of sequencing error
439851001264	CoA-binding protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02629
439851001312	PhoH protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02562
439851001318	metabolite transport protein YjhB; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF07690
439851001319	metabolite transport protein YjhB; this gene contains a frame shift which may be the result of sequencing error
439851001348	Sel1 repeat family protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF08238
439851001350	transposase InsF for insertion sequence IS3A/B/C/D/E/fA; this gene contains a frame shift which may be the result of sequencing error
439851001351	transposase InsF for insertion sequence IS3A/B/C/D/E/fA; this gene contains a frame shift which may be the result of sequencing error
439851001353	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851001357	outer membrane protein N (Porin OmpN); this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00267
439851001399	protein FliZ; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02899
439851001413	inner membrane protein; this gene contains a frame shift which may be the result of sequencing error
439851001414	inner membrane protein; this gene contains a frame shift which may be the result of sequencing error
439851001534	host specificity protein J; this gene contains a frame shift which may be the result of sequencing error
439851001535	gifsy-1 prophage VhsJ; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF09327
439851001550	appr-1-p processing enzyme family protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01661
439851001551	Tail fiber assembly protein homolog from lambdoid prophage; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02413
439851001565	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
439851001582	transporter, major facilitator family; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF07690
439851001628	membrane-bound lytic murein transglycosylase E (Mureinhydrolase E); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01464
439851001696	protein YciU; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF04269
439851001739	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851001814	periplasmic binding protein; this gene contains a premature stop which may be the result of sequencing error
439851001815	periplasmic binding protein; this gene contains a premature stop which may be the result of sequencing error
439851001818	inner membrane protein; this gene contains a frame shift which may be the result of sequencing error
439851001879	formate dehydrogenase, nitrate inducible, alpha subunit, selenocysteine-containing; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF04879; match to protein family HMM TIGR01409
439851001914	protein YneE; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF05249
439851001925	membrane protein; this gene contains a frame shift which may be the result of sequencing error
439851001926	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851001938	starvation-sensing protein RspB; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00107
439851001939	starvation-sensing protein RspB; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF08240
439851001970	arginine/ornithine antiporter; this gene contains a frame shift which may be the result of sequencing error
439851001971	GlpM family protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF06942
439851001974	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851001983	pts system maltose- and glucose-specific eiicb component; this gene contains a frame shift which may be the result of sequencing error
439851001997	pyridoxamine kinase (PM kinase); this gene contains a premature stop which may be the result of sequencing error
439851001998	pyridoxamine kinase (PM kinase); this gene contains a premature stop which may be the result of sequencing error
439851002037	type III secretion apparatus protein, HrpE/YscL family; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM TIGR02499
439851002056	transcriptional regulator, MerR family protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00376
439851002057	transcriptional regulator; this gene contains a frame shift which may be the result of sequencing error
439851002067	proline iminopeptidase like protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250
439851002081	cytoplasmic protein; this gene contains a frame shift which may be the result of sequencing error
439851002101	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851002183	transcriptional regulator, AraC family protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00165
439851002202	streptomycin 3''-adenylyltransferase; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF01909
439851002217	BNR/Asp-box repeat domain protein; this gene contains a frame shift which may be the result of sequencing error
439851002218	cytoplasmic protein; this gene contains a frame shift which may be the result of sequencing error
439851002230	EnvF; this gene contains a premature stop which may be the result of sequencing error
439851002231	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851002347	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
439851002357	bacteriophage Mu P protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF06893
439851002370	phage prohead protease, HK97 family; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543
439851002391	regulatory protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00717; match to protein family HMM PF01381
439851002426	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
439851002434	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851002440	branched chain amino acid transport protein; this gene contains a frame shift which may be the result of sequencing error
439851002450	mate efflux family protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
439851002533	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase (CDP-6-deoxy-delta-3,4-glucoseen reductase) (E3); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
439851002560	protein YegH; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00571; match to protein family HMM PF03471; match to protein family HMM PF03741
439851002565	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
439851002566	PAS domain protein; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
439851002568	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851002569	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851002585	fructose-bisphosphate aldolase class 1 (Fructose-biphosphate aldolase class I) (FBP aldolase); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01791
439851002626	transcriptional regulator, LysR family; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00126; match to protein family HMM PF03466
439851002635	galactose/methyl galactoside import ATP-binding protein MglA; this gene contains a premature stop which may be the result of sequencing error
439851002636	D-galactose-binding periplasmic protein (gbp) (d-galactose/d-glucose-binding protein) (ggbp); this gene contains a frame shift which may be the result of sequencing error
439851002678	protein UmuC; this gene contains a frame shift which may be the result of sequencing error
439851002680	bacteriophage tail fiber assembly protein; this gene contains a frame shift which may be the result of sequencing error
439851002681	phage protein; this gene contains a premature stop which may be the result of sequencing error
439851002682	side tail fiber protein; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF03406
439851002700	NapD protein; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF03927
439851002727	deubiquitinase; this gene contains a premature stop which may be the result of sequencing error
439851002774	aspartate/tyrosine/aromatic aminotransferase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00155
439851002775	aspartate aminotransferase; this gene contains a frame shift which may be the result of sequencing error
439851002819	protein YfcJ; this gene contains a premature stop which may be the result of sequencing error
439851002822	DNA-binding protein; this gene contains a premature stop which may be the result of sequencing error
439851002833	ribosomal large subunit L3 protein glutamine methyltransferase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536
439851002839	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF04175; match to protein family HMM TIGR00743
439851002847	is285 transposase; this gene contains a frame shift which may be the result of sequencing error
439851002851	phosphoglycerate transport: protein for signal transmission; this gene contains a premature stop which may be the result of sequencing error
439851002856	lipid A biosynthesis lauroyl acyltransferase (Heat shockprotein B); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03279; match to protein family HMM TIGR02207
439851002861	indole-3-pyruvate decarboxylase (Indolepyruvatedecarboxylase); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02776
439851002912	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851002924	ethanolamine utilization protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03319
439851002925	ethanolamine utilization protein EutM; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00936
439851002967	transposase B; this gene contains a premature stop which may be the result of sequencing error
439851002971	ShdA; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601
439851002972	ShdA; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM TIGR02601
439851002973	Aec4; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF05688; match to protein family HMM PF05689
439851002975	RatB; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF05688; match to protein family HMM PF05689
439851002980	ribosome-associated GTPase EngA; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650
439851002995	YfhM; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF01835; match to protein family HMM PF07703
439851002996	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
439851003033	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
439851003061	methyltransferase small; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF05175
439851003097	CorE; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01578
439851003110	type I secretion protein, ATP-binding protein; this gene contains a frame shift which may be the result of sequencing error
439851003111	protein secretion ABC efflux system, permease and ATP-binding protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00005; match to protein family HMM PF00664
439851003118	phage tail protein, P2 GpE family; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF06528
439851003153	phage regulatory protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF06892
439851003166	inner membrane protein; this gene contains a frame shift which may be the result of sequencing error
439851003179	protein CsiD; this gene contains a frame shift which may be the result of sequencing error
439851003182	4-aminobutyrate aminotransferase ((s)-3-amino-2-methylpropionate transaminase) (gamma-amino-n-butyratetransaminase) (gaba transaminase) (glutamate:succinic semialdehydetransaminase) (gaba aminotransferase) (gaba-at) (l-aibat); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00202
439851003210	glycoporin; this gene contains a premature stop which may be the result of sequencing error
439851003262	secreted effector protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03421
439851003280	type III effector protein IpaD/SipD/SspD; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF06511; match to protein family HMM TIGR02553
439851003281	cell invasion protein SipC (Effector protein sipC); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM TIGR02101
439851003300	probable transposase for transposon; this gene contains a frame shift which may be the result of sequencing error
439851003311	protein YgbM; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01261
439851003341	crispr-associated helicase Cas3; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM TIGR01587
439851003366	glucarate dehydratase; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF01188
439851003367	glucarate dehydratase (GDH) (GlucD); this gene contains a premature stop which may be the result of sequencing error
439851003399	membrane-bound lytic murein transglycosylase A (Murein hydrolase A) (Mlt38); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03562; match to protein family HMM PF06725
439851003402	N-acetylmuramoyl-L-alanine amidase AmiC; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01520; match to protein family HMM TIGR01409
439851003461	peptide chain release factor 2; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020
439851003487	ribose 5-phosphate isomerase A; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF06026; match to protein family HMM TIGR00021
439851003491	arginine exporter protein ArgO; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01810
439851003502	peptidase M48, Ste24p; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01435
439851003506	ureidoglycolate dehydrogenase; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF02615
439851003571	periplasmic binding protein; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF01497
439851003593	AraC-type transcriptional regulator N-terminus domain protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00165; match to protein family HMM PF06719
439851003597	2-oxoglutarate/malate translocator; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM TIGR00785
439851003670	glutathione S-transferase domain protein; this gene contains a frame shift which may be the result of sequencing error
439851003671	transferase; this gene contains a frame shift which may be the result of sequencing error
439851003686	glycerate kinase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
439851003690	galactarate dehydratase; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF04295; match to protein family HMM PF08666; match to protein family HMM TIGR03248
439851003717	polyribonucleotide nucleotidyltransferase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726
439851003740	transporter; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00892
439851003742	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851003769	glutamate synthase (NADPH), large subunit; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898
439851003782	cytoplasmic protein; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF05117; match to protein family HMM PF06877
439851003831	acriflavine resistance protein E (Protein EnvC); this gene contains a frame shift which may be the result of sequencing error
439851003841	protein YrdA; this region contains one or more premature stops and/or frameshifts
439851003842	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851003843	protein YrdA; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00132
439851003862	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851003889	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851003905	protein YdhR; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF08803
439851003932	protein transport protein HofQ; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515
439851003936	HofM protein; this gene contains a frame shift which may be the result of sequencing error
439851003963	RNA 3'- phosphate cyclase (RNA-3'-phosphatecyclase) (RNA cyclase); this gene contains a frame shift which may be the result of sequencing error
439851003964	RNA 3'- phosphate cyclase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01137
439851004033	ABC transporter, ATP binding protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00005
439851004062	2-dehydro-3-deoxygluconokinase (2-keto-3-deoxygluconokinase) (3-deoxy-2-oxo-D-gluconate kinase) (KDG kinase); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00294
439851004076	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851004077	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851004093	protein LpfD; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00419
439851004094	outer membrane usher protein FimD; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00577
439851004095	outer membrane usher protein LpfC; this gene contains a frame shift which may be the result of sequencing error
439851004110	transposase; this gene contains a premature stop which may be the result of sequencing error
439851004175	lipopolysaccharide core biosynthesis protein RfaZ; this gene contains a frame shift which may be the result of sequencing error
439851004190	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521
439851004209	sodium:galactoside family symporter; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM TIGR00792
439851004210	sodium:galactoside family symporter; this gene contains a frame shift which may be the result of sequencing error
439851004214	ATP binding protein; this gene contains a frame shift which may be the result of sequencing error
439851004215	ATP binding protein; this gene contains a frame shift which may be the result of sequencing error
439851004216	Aec79; this gene contains a premature stop which may be the result of sequencing error
439851004220	outer membrane autotransporter barrel domain protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414
439851004222	transcriptional regulatory protein; this gene contains a frame shift which may be the result of sequencing error
439851004223	transcriptional regulatory protein, C; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00486
439851004238	sigma-54 dependent transcription regulator; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00874
439851004239	sigma-54 dependent transcription regulator; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00158; match to protein family HMM PF07728
439851004243	purine ribonucleoside efflux pump NepI; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF07690
439851004297	transcriptional regulator; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00126; match to protein family HMM PF03466
439851004317	pts system fructose-specific eiibbc component (eiibbc-fru); this gene contains a frame shift which may be the result of sequencing error
439851004318	pts system fructose-specific eiibc component (eiibc-fru); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02379; match to protein family HMM TIGR00829
439851004401	exported protein; this gene contains a frame shift which may be the result of sequencing error
439851004418	hydrolase, Cof family; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
439851004423	dienelactone hydrolase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01738
439851004468	coproporphyrinogen III oxidase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF04055
439851004496	formate dehydrogenase-O, major subunit, selenocysteine-containing; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01553
439851004497	formate dehydrogenase, alpha subunit; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF04879; match to protein family HMM TIGR01409
439851004530	CDP-diacylglycerol pyrophosphatase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02611; match to protein family HMM TIGR00672
439851004535	sodium/sulphate symporter; this gene contains a premature stop which may be the result of sequencing error
439851004536	CDP-diacylglycerol pyrophosphatase (CDP-diacylglycerolphosphatidylhydrolase) (CDP-diglyceride hydrolase); this gene contains a premature stop which may be the result of sequencing error
439851004573	cytoplasmic protein; this gene contains a premature stop which may be the result of sequencing error
439851004599	HTH-type transcriptional repressor FabR; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00440
439851004648	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851004657	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851004665	peptidase E (Alpha-aspartyl dipeptidase) (Asp-specificdipeptidase) (Dipeptidase E); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03575
439851004701	phage shock protein G; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM TIGR02975
439851004721	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851004742	formate dehydrogenase, alpha subunit; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01591
439851004743	formate dehydrogenase H (Formate-hydrogen-lyase-linked,selenocysteine-containing polypeptide) (Formate dehydrogenase-H alphasubunit) (FDH-H); this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF04879
439851004751	membrane protein YjdB; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00884; match to protein family HMM PF08019
439851004766	oxidoreductase component; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF06192
439851004774	cytoplasmic protein; this gene contains a frame shift which may be the result of sequencing error
439851004786	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851004796	transcriptional regulatory protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00196
439851004798	quaternary ammonium compound-resistance protein SugE; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00893
439851004832	resembles eukaryotic-type potassium channels; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF07885
439851004844	ascorbate-specific phosphotransferase enzyme IIB component; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF02302
439851004863	transcriptional regulator, HxlR family; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01638
439851004878	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851004900	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851004906	PyrBI operon leader peptide; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF08052
439851004919	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851004922	inner membrane protein YjgN (ORF X); this gene contains a frame shift which may be the result of sequencing error
439851004935	truncated transposase; this gene contains a premature stop which may be the result of sequencing error
439851004939	transposase InsF for insertion sequence IS3A/B/C/D/E/fA; this gene contains a frame shift which may be the result of sequencing error
439851004940	transposase InsF for insertion sequence IS3A/B/C/D/E/fA; this gene contains a frame shift which may be the result of sequencing error
439851004953	SrgB; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF06977
439851004955	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
439851004956	transposase B; this gene contains a premature stop which may be the result of sequencing error
439851004957	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
439851004958	HNH nuclease; this gene contains a premature stop which may be the result of sequencing error
439851004985	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM TIGR01784
439851004986	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784
439851004992	sty sbli; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF01420
439851004994	Mrr restriction system protein (EcoKMrr); this gene contains a frame shift which may be the result of sequencing error
439851004995	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
439851004998	N-6 DNA Methylase family protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02384
439851005051	conserved domain protein; this gene contains a frame shift which may be the result of sequencing error
439851005064	inner membrane protein CreD; this gene contains a frame shift which may be the result of sequencing error
439851005072	periplasmic protein; this region contains one or more premature stops and/or frameshifts