-- dump date 20140620_054550 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 chrom_position -- field 4 chromosome -- field 5 codon_start -- field 6 contig -- field 7 description -- field 8 end_pos -- field 9 gene -- field 10 gene_id -- field 11 name -- field 12 organism -- field 13 product -- field 14 protein_id -- field 15 start_pos -- field 16 strand -- field 17 taxid -- field 18 type -- header -- id GI chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_008611835.1 549478130 338..2800 1 NC_022525.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional aspartokinase I/homoserine dehydrogenase I 2800 thrA 1064551000001 thrA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional aspartokinase I/homoserine dehydrogenase I YP_008611835.1 338 D 1064551 CDS YP_008611836.1 549481666 2802..3731 1 NC_022525.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; homoserine kinase 3731 1064551000002 IA1_00010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 homoserine kinase YP_008611836.1 2802 D 1064551 CDS YP_008611837.1 549478131 3735..5021 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine synthase 5021 1064551000003 IA1_00015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 threonine synthase YP_008611837.1 3735 D 1064551 CDS YP_008611838.1 549478132 complement(5115..5888) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 5888 1064551000004 IA1_00020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611838.1 5115 R 1064551 CDS YP_008611839.1 549478133 complement(5967..7397) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:alanine symporter 7397 1064551000005 IA1_00025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sodium:alanine symporter YP_008611839.1 5967 R 1064551 CDS YP_008611840.1 549478134 7666..8619 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transaldolase 8619 1064551000006 IA1_00030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transaldolase YP_008611840.1 7666 D 1064551 CDS YP_008611841.1 549478135 8730..9320 1 NC_022525.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum cofactor biosynthesis protein MogA 9320 mogA 1064551000007 mogA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdenum cofactor biosynthesis protein MogA YP_008611841.1 8730 D 1064551 CDS YP_008611842.1 549478136 complement(9377..9943) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 9943 1064551000008 IA1_00040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611842.1 9377 R 1064551 CDS YP_008611843.1 549478137 complement(10093..10806) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 10806 1064551000009 IA1_00045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611843.1 10093 R 1064551 CDS YP_008611844.1 549478138 complement(10842..11246) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 11246 1064551000010 IA1_00050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611844.1 10842 R 1064551 CDS YP_008611845.1 549481667 11245..11478 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 11478 1064551000011 IA1_00055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611845.1 11245 D 1064551 CDS YP_008611846.1 549478139 11595..13511 1 NC_022525.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone DnaK 13511 dnaK 1064551000012 dnaK Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molecular chaperone DnaK YP_008611846.1 11595 D 1064551 CDS YP_008611847.1 549478140 13597..14736 1 NC_022525.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone DnaJ 14736 1064551000013 IA1_00065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molecular chaperone DnaJ YP_008611847.1 13597 D 1064551 CDS YP_008611848.1 549478141 15017..15964 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 15964 1064551000014 IA1_00070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 regulatory protein YP_008611848.1 15017 D 1064551 CDS YP_008611849.1 549478142 16091..16435 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 16435 1064551000015 IA1_00075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611849.1 16091 D 1064551 CDS YP_008611850.1 549478143 complement(16496..17029) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; secretion activating protein 17029 1064551000016 IA1_00080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 secretion activating protein YP_008611850.1 16496 R 1064551 CDS YP_008611851.1 549478144 complement(17046..17489) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 17489 1064551000017 IA1_00085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008611851.1 17046 R 1064551 CDS YP_008611852.1 549478145 17870..19969 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; chitinase 19969 1064551000018 IA1_00090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chitinase YP_008611852.1 17870 D 1064551 CDS YP_008611853.1 549478146 20061..23057 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; chitinase 23057 1064551000019 IA1_00095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chitinase YP_008611853.1 20061 D 1064551 CDS YP_008611854.1 549478147 23338..24042 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 24042 1064551000020 IA1_00100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611854.1 23338 D 1064551 CDS YP_008611855.1 549478148 24472..25014 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein BcfA 25014 1064551000021 IA1_00105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein BcfA YP_008611855.1 24472 D 1064551 CDS YP_008611856.1 549478149 25115..25801 1 NC_022525.1 fimbrial protein chaperone; interacts with BcfD; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone protein BcfB 25801 1064551000022 IA1_00110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial chaperone protein BcfB YP_008611856.1 25115 D 1064551 CDS YP_008611857.1 549478150 25806..28427 1 NC_022525.1 involved in fimbria production; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane usher protein 28427 1064551000023 IA1_00115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane usher protein YP_008611857.1 25806 D 1064551 CDS YP_008611858.1 549478151 28428..29435 1 NC_022525.1 involved in the regulation of length and mediates adhesion; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein BcfD 29435 1064551000024 IA1_00120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein BcfD YP_008611858.1 28428 D 1064551 CDS YP_008611859.1 549478152 29436..29981 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein BcfE 29981 1064551000025 IA1_00125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein BcfE YP_008611859.1 29436 D 1064551 CDS YP_008611860.1 549478153 29997..30515 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein BcfF 30515 1064551000026 IA1_00130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein BcfF YP_008611860.1 29997 D 1064551 CDS YP_008611861.1 549478154 30481..31212 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone 31212 1064551000027 IA1_00135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial chaperone YP_008611861.1 30481 D 1064551 CDS YP_008611862.1 549478155 31276..32121 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol-disulfide isomerase 32121 1064551000028 IA1_00140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiol-disulfide isomerase YP_008611862.1 31276 D 1064551 CDS YP_008611863.1 549481668 32160..32447 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 32447 1064551000029 IA1_00145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008611863.1 32160 D 1064551 CDS YP_008611864.1 549478156 complement(32547..32996) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 32996 1064551000030 IA1_00150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008611864.1 32547 R 1064551 CDS YP_008611865.1 549481669 33366..34361 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LysR family transcriptional regulator 34361 1064551000031 IA1_00155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcriptional regulator YP_008611865.1 33366 D 1064551 CDS YP_008611866.1 549478157 complement(34378..34818) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 34818 1064551000032 IA1_00160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008611866.1 34378 R 1064551 CDS YP_008611867.1 549481670 35341..37059 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arylsulfatase 37059 1064551000033 IA1_00165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arylsulfatase YP_008611867.1 35341 D 1064551 CDS YP_008611868.1 549478158 complement(37105..38667) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-nucleotidase 38667 1064551000034 IA1_00170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5'-nucleotidase YP_008611868.1 37105 R 1064551 CDS YP_008611869.1 549478159 complement(38775..39536) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 39536 1064551000035 IA1_00175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611869.1 38775 R 1064551 CDS YP_008611870.1 549478160 40131..41624 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; arylsulfatase 41624 1064551000036 IA1_00180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arylsulfatase YP_008611870.1 40131 D 1064551 CDS YP_008611871.1 549478161 41723..42913 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; anaerobic sulfatase maturase 42913 1064551000037 IA1_00185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 anaerobic sulfatase maturase YP_008611871.1 41723 D 1064551 CDS YP_008611872.1 549478162 42932..44194 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 44194 1064551000038 IA1_00190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611872.1 42932 D 1064551 CDS YP_008611873.1 549481671 complement(44191..44313) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 44313 1064551000039 IA1_00195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611873.1 44191 R 1064551 CDS YP_008611874.1 549481672 44312..46027 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arylsulfatase 46027 1064551000040 IA1_00200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arylsulfatase YP_008611874.1 44312 D 1064551 CDS YP_008611875.1 549478163 46190..47356 1 NC_022525.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 47356 nhaA 1064551000041 nhaA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sodium:proton antiporter YP_008611875.1 46190 D 1064551 CDS YP_008611876.1 549478164 47418..48317 1 NC_022525.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 48317 nhaR 1064551000042 nhaR Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008611876.1 47418 D 1064551 CDS YP_008611877.1 549478165 complement(48372..50411) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; family 31 glucosidase 50411 1064551000043 IA1_00215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 family 31 glucosidase YP_008611877.1 48372 R 1064551 CDS YP_008611878.1 549481673 complement(50451..51824) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sodium:solute symporter 51824 1064551000044 IA1_00220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sodium:solute symporter YP_008611878.1 50451 R 1064551 CDS YP_008611879.1 549481674 complement(52280..52465) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 30S ribosomal protein S20 52465 1064551000045 IA1_00225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S20 YP_008611879.1 52280 R 1064551 CDS YP_008611880.1 549478166 52872..53810 1 NC_022525.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional riboflavin kinase/FMN adenylyltransferase 53810 1064551000046 IA1_00230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional riboflavin kinase/FMN adenylyltransferase YP_008611880.1 52872 D 1064551 CDS YP_008611881.1 549478167 53819..56689 1 NC_022525.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; isoleucyl-tRNA synthetase 56689 ileS 1064551000047 ileS Salmonella enterica subsp. enterica serovar Thompson str. RM6836 isoleucyl-tRNA synthetase YP_008611881.1 53819 D 1064551 CDS YP_008611882.1 549478168 56689..57189 1 NC_022525.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein signal peptidase 57189 lspA 1064551000048 lspA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein signal peptidase YP_008611882.1 56689 D 1064551 CDS YP_008611883.1 549478169 57344..57793 1 NC_022525.1 rotamase; accelerates isomerization of the peptidyl prolyl bond, involved in the folding of proteases; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase 57793 1064551000049 IA1_00245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidyl-prolyl cis-trans isomerase YP_008611883.1 57344 D 1064551 CDS YP_008611884.1 549478170 57796..58746 1 NC_022525.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 58746 ispH 1064551000050 ispH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_008611884.1 57796 D 1064551 CDS YP_008611885.1 549478171 58946..60148 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite reductase 60148 1064551000051 IA1_00255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrite reductase YP_008611885.1 58946 D 1064551 CDS YP_008611886.1 549478172 60164..61084 1 NC_022525.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside hydrolase 61084 1064551000052 IA1_00260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonucleoside hydrolase YP_008611886.1 60164 D 1064551 CDS YP_008611887.1 549478173 complement(61106..61792) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheY 61792 1064551000053 IA1_00265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chemotaxis protein CheY YP_008611887.1 61106 R 1064551 CDS YP_008611888.1 549478174 complement(61794..63452) 1 NC_022525.1 regulates the expression of citrate fermentation genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase DpiB 63452 dpiB 1064551000054 dpiB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensor histidine kinase DpiB YP_008611888.1 61794 R 1064551 CDS YP_008611889.1 549478175 complement(63548..64849) 1 NC_022525.1 catalyzes the formation of pyruvate from oxaloacetate; sodium translocating; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase subunit beta 64849 1064551000055 IA1_00275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxaloacetate decarboxylase subunit beta YP_008611889.1 63548 R 1064551 CDS YP_008611890.1 549478176 complement(64862..66631) 1 NC_022525.1 catalyzes the formation of pyruvate from oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase 66631 1064551000056 IA1_00280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxaloacetate decarboxylase YP_008611890.1 64862 R 1064551 CDS YP_008611891.1 549478177 complement(66647..66886) 1 NC_022525.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase subunit gamma 66886 1064551000057 IA1_00285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxaloacetate decarboxylase subunit gamma YP_008611891.1 66647 R 1064551 CDS YP_008611892.1 549478178 complement(67045..68385) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate:sodium symporter 68385 1064551000058 IA1_00290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 citrate:sodium symporter YP_008611892.1 67045 R 1064551 CDS YP_008611893.1 549478179 69702..69995 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit gamma 69995 1064551000060 IA1_00300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 citrate lyase subunit gamma YP_008611893.1 69702 D 1064551 CDS YP_008611894.1 549478180 69992..70861 1 NC_022525.1 citryl-ACP lyase; catalyzes the formation of acetate and oxaloacetate from citrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit beta 70861 1064551000061 IA1_00305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 citrate lyase subunit beta YP_008611894.1 69992 D 1064551 CDS YP_008611895.1 549478181 70872..72392 1 NC_022525.1 citrate-ACP transferase, the alpha subunit catalyzes the formation of (3S)-citryl-CoA from acetyl-CoA and citrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit alpha 72392 1064551000062 IA1_00310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 citrate lyase subunit alpha YP_008611895.1 70872 D 1064551 CDS YP_008611896.1 549478182 72392..72943 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 72943 1064551000063 IA1_00315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase YP_008611896.1 72392 D 1064551 CDS YP_008611897.1 549478183 72921..73829 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase 73829 1064551000064 IA1_00320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase YP_008611897.1 72921 D 1064551 CDS YP_008611898.1 549478184 74009..74830 1 NC_022525.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrodipicolinate reductase 74830 1064551000065 IA1_00325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydrodipicolinate reductase YP_008611898.1 74009 D 1064551 CDS YP_008611899.1 549481675 complement(74958..75233) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; viral protein 75233 1064551000066 IA1_00330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 viral protein YP_008611899.1 74958 R 1064551 CDS YP_008611900.1 549478185 75872..77020 1 NC_022525.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamoyl phosphate synthase small subunit 77020 1064551000067 IA1_00335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbamoyl phosphate synthase small subunit YP_008611900.1 75872 D 1064551 CDS YP_008611901.1 549478186 77039..80266 1 NC_022525.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamoyl phosphate synthase large subunit 80266 carB 1064551000068 carB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbamoyl phosphate synthase large subunit YP_008611901.1 77039 D 1064551 CDS YP_008611902.1 549478187 80540..80935 1 NC_022525.1 regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 80935 1064551000069 IA1_00345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008611902.1 80540 D 1064551 CDS YP_008611903.1 549478188 complement(81013..81609) 1 NC_022525.1 involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; carnitine operon protein CaiE 81609 1064551000070 IA1_00350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carnitine operon protein CaiE YP_008611903.1 81013 R 1064551 CDS YP_008611904.1 549478189 complement(81718..82503) 1 NC_022525.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; carnitinyl-CoA dehydratase 82503 1064551000071 IA1_00355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carnitinyl-CoA dehydratase YP_008611904.1 81718 R 1064551 CDS YP_008611905.1 549478190 complement(82557..84110) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; carnitine-CoA ligase 84110 1064551000072 IA1_00360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carnitine-CoA ligase YP_008611905.1 82557 R 1064551 CDS YP_008611906.1 549481676 complement(84173..85390) 1 NC_022525.1 catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; crotonobetainyl-CoA:carnitine CoA-transferase 85390 1064551000073 IA1_00365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 crotonobetainyl-CoA:carnitine CoA-transferase YP_008611906.1 84173 R 1064551 CDS YP_008611907.1 549478191 complement(85502..86644) 1 NC_022525.1 catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; crotonobetainyl-CoA dehydrogenase 86644 1064551000074 IA1_00370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 crotonobetainyl-CoA dehydrogenase YP_008611907.1 85502 R 1064551 CDS YP_008611908.1 549478192 complement(86679..88196) 1 NC_022525.1 catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter 88196 1064551000075 IA1_00375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 antiporter YP_008611908.1 86679 R 1064551 CDS YP_008611909.1 549478193 88677..89447 1 NC_022525.1 required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein FixB 89447 1064551000076 IA1_00385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 electron transfer flavoprotein FixB YP_008611909.1 88677 D 1064551 CDS YP_008611910.1 549478194 89463..90404 1 NC_022525.1 involved in electron transfer during carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein subunit alpha 90404 fixB 1064551000077 fixB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 electron transfer flavoprotein subunit alpha YP_008611910.1 89463 D 1064551 CDS YP_008611911.1 549478195 90454..91740 1 NC_022525.1 FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase FixC 91740 1064551000078 IA1_00395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase FixC YP_008611911.1 90454 D 1064551 CDS YP_008611912.1 549478196 91737..92024 1 NC_022525.1 necessary for anaerobic carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin FixX 92024 1064551000079 IA1_00400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferredoxin FixX YP_008611912.1 91737 D 1064551 CDS YP_008611913.1 549478197 92105..93511 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; metabolite transporter 93511 1064551000080 IA1_00405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 metabolite transporter YP_008611913.1 92105 D 1064551 CDS YP_008611914.1 549478198 93600..93830 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 93830 1064551000081 IA1_00410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611914.1 93600 D 1064551 CDS YP_008611915.1 549478199 94116..94538 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 94538 1064551000082 IA1_00415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611915.1 94116 D 1064551 CDS YP_008611916.1 549478200 complement(94762..95052) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 95052 1064551000083 IA1_00420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611916.1 94762 R 1064551 CDS YP_008611917.1 549478201 95950..97839 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatase/sulfatase 97839 1064551000084 IA1_00425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphatase/sulfatase YP_008611917.1 95950 D 1064551 CDS YP_008611918.1 549478202 98245..98775 1 NC_022525.1 Required for full activity of KefC, a potassium-proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter 98775 1064551000085 IA1_00430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 potassium transporter YP_008611918.1 98245 D 1064551 CDS YP_008611919.1 549478203 98768..100630 1 NC_022525.1 transport system that facilitates potassium-efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter 100630 1064551000086 IA1_00435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 potassium transporter YP_008611919.1 98768 D 1064551 CDS YP_008611920.1 549478204 100829..101308 1 NC_022525.1 catalyzes the reduction of dihydrofolate to tetrahydrofolate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrofolate reductase 101308 folA 1064551000087 folA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydrofolate reductase YP_008611920.1 100829 D 1064551 CDS YP_008611921.1 549478205 complement(101414..102262) 1 NC_022525.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; diadenosine tetraphosphatase 102262 apaH 1064551000088 apaH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diadenosine tetraphosphatase YP_008611921.1 101414 R 1064551 CDS YP_008611922.1 549478206 complement(102273..102650) 1 NC_022525.1 protein associated with Co2+ and Mg2+ efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt transporter 102650 apaG 1064551000089 apaG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt transporter YP_008611922.1 102273 R 1064551 CDS YP_008611923.1 549478207 complement(102653..103474) 1 NC_022525.1 in Escherichia coli this enzyme catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; members of this protein family have secondary functions; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 103474 ksgA 1064551000090 ksgA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 16S rRNA methyltransferase YP_008611923.1 102653 R 1064551 CDS YP_008611924.1 549478208 complement(103471..104460) 1 NC_022525.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxythreonine-4-phosphate dehydrogenase 104460 pdxA 1064551000091 pdxA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-hydroxythreonine-4-phosphate dehydrogenase YP_008611924.1 103471 R 1064551 CDS YP_008611925.1 549478209 complement(104460..105746) 1 NC_022525.1 Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase 105746 1064551000092 IA1_00465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidyl-prolyl cis-trans isomerase YP_008611925.1 104460 R 1064551 CDS YP_008611926.1 549478210 complement(105800..108160) 1 NC_022525.1 is involved in outer membrane permeability; Derived by automated computational analysis using gene prediction method: Protein Homology.; LPS assembly outer membrane complex protein LptD 108160 1064551000093 IA1_00470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LPS assembly outer membrane complex protein LptD YP_008611926.1 105800 R 1064551 CDS YP_008611927.1 549478211 108414..109226 1 NC_022525.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone DnaJ 109226 djlA 1064551000094 djlA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molecular chaperone DnaJ YP_008611927.1 108414 D 1064551 CDS YP_008611928.1 549478212 complement(109321..109980) 1 NC_022525.1 catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA/tRNA pseudouridine synthase A 109980 1064551000095 IA1_00480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 23S rRNA/tRNA pseudouridine synthase A YP_008611928.1 109321 R 1064551 CDS YP_008611929.1 549478213 complement(109992..112898) 1 NC_022525.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent helicase 112898 1064551000096 IA1_00485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-dependent helicase YP_008611929.1 109992 R 1064551 CDS YP_008611930.1 549478214 complement(113072..115423) 1 NC_022525.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase II 115423 1064551000097 IA1_00490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA polymerase II YP_008611930.1 113072 R 1064551 CDS YP_008611931.1 549478215 complement(115467..116087) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 116087 1064551000098 IA1_00495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611931.1 115467 R 1064551 CDS YP_008611932.1 549478216 116605..117024 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 117024 1064551000099 IA1_00500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611932.1 116605 D 1064551 CDS YP_008611933.1 549478217 complement(117030..117725) 1 NC_022525.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ribulose-5-phosphate 4-epimerase 117725 araD 1064551000100 araD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-ribulose-5-phosphate 4-epimerase YP_008611933.1 117030 R 1064551 CDS YP_008611934.1 549478218 complement(117866..119368) 1 NC_022525.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose isomerase 119368 1064551000101 IA1_00510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arabinose isomerase YP_008611934.1 117866 R 1064551 CDS YP_008611935.1 549478219 complement(119379..121088) 1 NC_022525.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribulokinase 121088 1064551000102 IA1_00515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribulokinase YP_008611935.1 119379 R 1064551 CDS YP_008611936.1 549478220 121429..122274 1 NC_022525.1 positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 122274 1064551000103 IA1_00520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008611936.1 121429 D 1064551 CDS YP_008611937.1 549478221 122393..123160 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 123160 1064551000104 IA1_00525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008611937.1 122393 D 1064551 CDS YP_008611938.1 549478222 complement(123199..123906) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine ABC transporter ATP-binding protein 123906 1064551000105 IA1_00530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginine ABC transporter ATP-binding protein YP_008611938.1 123199 R 1064551 CDS YP_008611939.1 549478223 complement(123890..125500) 1 NC_022525.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine transporter membrane protein 125500 thiP 1064551000106 thiP Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiamine transporter membrane protein YP_008611939.1 123890 R 1064551 CDS YP_008611940.1 549478224 complement(125476..126459) 1 NC_022525.1 part of the thiamine and TPP transport system tbpA-thiPQ; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine ABC transporter substrate-binding protein 126459 tbpA 1064551000107 tbpA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiamine ABC transporter substrate-binding protein YP_008611940.1 125476 R 1064551 CDS YP_008611941.1 549478225 complement(126637..128295) 1 NC_022525.1 activates sgrS under glucose-phosphate stress conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 128295 1064551000108 IA1_00545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008611941.1 126637 R 1064551 CDS YP_008611942.1 549481677 128388..128510 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; inhibitor of glucose transporter 128510 1064551000109 IA1_00550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 inhibitor of glucose transporter YP_008611942.1 128388 D 1064551 CDS YP_008611943.1 549481678 128830..129111 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 129111 1064551000110 IA1_00555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611943.1 128830 D 1064551 CDS YP_008611944.1 549478226 complement(129165..129770) 1 NC_022525.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; Derived by automated computational analysis using gene prediction method: Protein Homology.; isopropylmalate isomerase 129770 leuD 1064551000111 leuD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 isopropylmalate isomerase YP_008611944.1 129165 R 1064551 CDS YP_008611945.1 549478227 complement(129781..131181) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydratase large subunit 131181 1064551000112 IA1_00565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-isopropylmalate dehydratase large subunit YP_008611945.1 129781 R 1064551 CDS YP_008611946.1 549478228 complement(131184..132275) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydrogenase 132275 1064551000113 IA1_00570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-isopropylmalate dehydrogenase YP_008611946.1 131184 R 1064551 CDS YP_008611947.1 549478229 complement(132275..133846) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-isopropylmalate synthase 133846 1064551000114 IA1_00575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-isopropylmalate synthase YP_008611947.1 132275 R 1064551 CDS YP_008611948.1 549478230 134677..135621 1 NC_022525.1 activator for leuABCD operon; member of LysR family of transcriptional activators; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucine transcriptional activator 135621 leuO 1064551000115 leuO Salmonella enterica subsp. enterica serovar Thompson str. RM6836 leucine transcriptional activator YP_008611948.1 134677 D 1064551 CDS YP_008611949.1 549478231 135967..137667 1 NC_022525.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 137667 1064551000116 IA1_00585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetolactate synthase YP_008611949.1 135967 D 1064551 CDS YP_008611950.1 549478232 137667..138161 1 NC_022525.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 138161 ilvH 1064551000117 ilvH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetolactate synthase YP_008611950.1 137667 D 1064551 CDS YP_008611951.1 549478233 138445..139449 1 NC_022525.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 139449 1064551000118 IA1_00595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008611951.1 138445 D 1064551 CDS YP_008611952.1 549478234 140055..140513 1 NC_022525.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein MraZ 140513 1064551000119 IA1_00600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein MraZ YP_008611952.1 140055 D 1064551 CDS YP_008611953.1 549478235 140515..141456 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 141456 1064551000120 IA1_00605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 16S rRNA methyltransferase YP_008611953.1 140515 D 1064551 CDS YP_008611954.1 549481679 141453..141818 1 NC_022525.1 membrane bound cell division protein at septum containing leucine zipper motif; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cell division protein FtsL 141818 1064551000121 IA1_00610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsL YP_008611954.1 141453 D 1064551 CDS YP_008611955.1 549478236 141834..143600 1 NC_022525.1 penicillin-binding protein 3; transpeptidase involved in septal peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsI 143600 1064551000122 IA1_00615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsI YP_008611955.1 141834 D 1064551 CDS YP_008611956.1 549478237 143587..145074 1 NC_022525.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 145074 murE 1064551000123 murE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_008611956.1 143587 D 1064551 CDS YP_008611957.1 549478238 145071..146429 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 146429 murF 1064551000124 murF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_008611957.1 145071 D 1064551 CDS YP_008611958.1 549478239 146423..147505 1 NC_022525.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-N-acetylmuramoyl-pentapeptide- transferase 147505 mraY 1064551000125 mraY Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_008611958.1 146423 D 1064551 CDS YP_008611959.1 549481680 147508..148824 1 NC_022525.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 148824 murD 1064551000126 murD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_008611959.1 147508 D 1064551 CDS YP_008611960.1 549478240 148824..150068 1 NC_022525.1 integral membrane protein involved in stabilizing FstZ ring during cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsW 150068 1064551000127 IA1_00640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsW YP_008611960.1 148824 D 1064551 CDS YP_008611961.1 549478241 150065..151132 1 NC_022525.1 N-acetylglucosaminyl transferase; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-diphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 151132 murG 1064551000128 murG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-diphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_008611961.1 150065 D 1064551 CDS YP_008611962.1 549478242 151251..152726 1 NC_022525.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramate--alanine ligase 152726 murC 1064551000129 murC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-N-acetylmuramate--alanine ligase YP_008611962.1 151251 D 1064551 CDS YP_008611963.1 549478243 152719..153639 1 NC_022525.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanine--D-alanine ligase 153639 ddl 1064551000130 ddl Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-alanine--D-alanine ligase YP_008611963.1 152719 D 1064551 CDS YP_008611964.1 549478244 153641..154471 1 NC_022525.1 involved in septum formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsQ 154471 1064551000131 IA1_00660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsQ YP_008611964.1 153641 D 1064551 CDS YP_008611965.1 549478245 154468..155730 1 NC_022525.1 ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsA 155730 ftsA 1064551000132 ftsA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsA YP_008611965.1 154468 D 1064551 CDS YP_008611966.1 549478246 155791..156942 1 NC_022525.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M23 156942 1064551000133 IA1_00670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidase M23 YP_008611966.1 155791 D 1064551 CDS YP_008611967.1 549478247 157043..157960 1 NC_022525.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 157960 lpxC 1064551000134 lpxC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_008611967.1 157043 D 1064551 CDS YP_008611968.1 549478248 158238..158735 1 NC_022525.1 secM translational pause allows for the initiation of secA translation; Derived by automated computational analysis using gene prediction method: Protein Homology.; SecA regulator SecM 158735 1064551000135 IA1_00680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 SecA regulator SecM YP_008611968.1 158238 D 1064551 CDS YP_008611969.1 549478249 158797..161502 1 NC_022525.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecA 161502 secA 1064551000136 secA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 preprotein translocase subunit SecA YP_008611969.1 158797 D 1064551 CDS YP_008611970.1 549478250 161658..162053 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate pyrophosphohydrolase 162053 1064551000137 IA1_00690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleoside triphosphate pyrophosphohydrolase YP_008611970.1 161658 D 1064551 CDS YP_008611971.1 549481681 complement(162087..163076) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aldo/keto reductase 163076 1064551000138 IA1_00695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aldo/keto reductase YP_008611971.1 162087 R 1064551 CDS YP_008611972.1 549481682 163180..164103 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LysR family transcriptional regulator 164103 1064551000139 IA1_00700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcriptional regulator YP_008611972.1 163180 D 1064551 CDS YP_008611973.1 549478251 complement(164100..164291) 1 NC_022525.1 inhibits supercoiling by DNA gyrase by binding to the GyrB subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase inhibitor 164291 1064551000140 IA1_00705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA gyrase inhibitor YP_008611973.1 164100 R 1064551 CDS YP_008611974.1 549478252 complement(164301..165044) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 165044 1064551000141 IA1_00710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611974.1 164301 R 1064551 CDS YP_008611975.1 549478253 complement(165044..165664) 1 NC_022525.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; dephospho-CoA kinase 165664 coaE 1064551000142 coaE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dephospho-CoA kinase YP_008611975.1 165044 R 1064551 CDS YP_008611976.1 549478254 165890..166933 1 NC_022525.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; guanosine 5'-monophosphate oxidoreductase 166933 1064551000143 IA1_00720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 guanosine 5'-monophosphate oxidoreductase YP_008611976.1 165890 D 1064551 CDS YP_008611977.1 549478255 complement(166964..168166) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV pilin biogenesis protein 168166 1064551000144 IA1_00725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type IV pilin biogenesis protein YP_008611977.1 166964 R 1064551 CDS YP_008611978.1 549478256 complement(168156..169541) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 169541 1064551000145 IA1_00730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611978.1 168156 R 1064551 CDS YP_008611979.1 549478257 complement(169551..169988) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; major pilin subunit 169988 1064551000146 IA1_00735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 major pilin subunit YP_008611979.1 169551 R 1064551 CDS YP_008611980.1 549478258 complement(170210..171103) 1 NC_022525.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinate-nucleotide pyrophosphorylase 171103 1064551000147 IA1_00740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nicotinate-nucleotide pyrophosphorylase YP_008611980.1 170210 R 1064551 CDS YP_008611981.1 549478259 171191..171754 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyl-anhydromuranmyl-L-alanine amidase 171754 1064551000148 IA1_00745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetyl-anhydromuranmyl-L-alanine amidase YP_008611981.1 171191 D 1064551 CDS YP_008611982.1 549478260 171751..172605 1 NC_022525.1 involved in regulation of beta-lactamase; putative signaling protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 172605 1064551000149 IA1_00750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 regulatory protein YP_008611982.1 171751 D 1064551 CDS YP_008611983.1 549478261 complement(172697..173647) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-N-arabinofuranosidase 173647 1064551000150 IA1_00755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alpha-N-arabinofuranosidase YP_008611983.1 172697 R 1064551 CDS YP_008611984.1 549478262 complement(173647..175053) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GPH family transporter 175053 1064551000151 IA1_00760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GPH family transporter YP_008611984.1 173647 R 1064551 CDS YP_008611985.1 549478263 complement(175217..176590) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid transporter 176590 1064551000152 IA1_00765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aromatic amino acid transporter YP_008611985.1 175217 R 1064551 CDS YP_008611986.1 549478264 177153..177917 1 NC_022525.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 177917 pdhR 1064551000153 pdhR Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008611986.1 177153 D 1064551 CDS YP_008611987.1 549478265 178077..180740 1 NC_022525.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate dehydrogenase 180740 aceE 1064551000154 aceE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyruvate dehydrogenase YP_008611987.1 178077 D 1064551 CDS YP_008611988.1 549478266 180755..182644 1 NC_022525.1 E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoamide acetyltransferase 182644 aceF 1064551000155 aceF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydrolipoamide acetyltransferase YP_008611988.1 180755 D 1064551 CDS YP_008611989.1 549478267 182845..184269 1 NC_022525.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoamide dehydrogenase 184269 1064551000156 IA1_00785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydrolipoamide dehydrogenase YP_008611989.1 182845 D 1064551 CDS YP_008611990.1 549481683 complement(184352..184450) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 184450 1064551000157 IA1_00790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611990.1 184352 R 1064551 CDS YP_008611991.1 549478268 184558..184842 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 184842 1064551000158 IA1_00795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008611991.1 184558 D 1064551 CDS YP_008611992.1 549478269 complement(184880..185671) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 185671 1064551000159 IA1_00800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611992.1 184880 R 1064551 CDS YP_008611993.1 549481684 complement(185684..187306) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 187306 1064551000160 IA1_00805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008611993.1 185684 R 1064551 CDS YP_008611994.1 549478270 187695..190292 1 NC_022525.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 190292 1064551000161 IA1_00810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_008611994.1 187695 D 1064551 CDS YP_008611995.1 549481685 complement(190324..191295) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 191295 1064551000162 IA1_00815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611995.1 190324 R 1064551 CDS YP_008611996.1 549481686 191368..192456 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 192456 1064551000163 IA1_00820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611996.1 191368 D 1064551 CDS YP_008611997.1 549481687 192568..192747 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 192747 1064551000164 IA1_00825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611997.1 192568 D 1064551 CDS YP_008611998.1 549481688 complement(192813..193745) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 193745 1064551000165 IA1_00830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611998.1 192813 R 1064551 CDS YP_008611999.1 549481689 193820..194983 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 194983 1064551000166 IA1_00835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008611999.1 193820 D 1064551 CDS YP_008612000.1 549481690 194985..195164 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aconitate hydratase 195164 1064551000167 IA1_00840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aconitate hydratase YP_008612000.1 194985 D 1064551 CDS YP_008612001.1 549481691 complement(195204..195668) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 195668 1064551000168 IA1_00845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612001.1 195204 R 1064551 CDS YP_008612002.1 549481692 complement(196078..196401) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphotyrosine protein phosphatase 196401 1064551000169 IA1_00850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphotyrosine protein phosphatase YP_008612002.1 196078 R 1064551 CDS YP_008612003.1 549478271 196672..197034 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 197034 1064551000170 IA1_00855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612003.1 196672 D 1064551 CDS YP_008612004.1 549478272 197271..198224 1 NC_022525.1 transports degraded pectin products into the bacterial cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxygluconate permease 198224 1064551000171 IA1_00860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-keto-3-deoxygluconate permease YP_008612004.1 197271 D 1064551 CDS YP_008612005.1 549478273 198221..199492 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 199492 1064551000172 IA1_00865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612005.1 198221 D 1064551 CDS YP_008612006.1 549478274 199482..200465 1 NC_022525.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxythreonine-4-phosphate dehydrogenase 200465 pdxA 1064551000173 pdxA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-hydroxythreonine-4-phosphate dehydrogenase YP_008612006.1 199482 D 1064551 CDS YP_008612007.1 549478275 200475..201242 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 201242 1064551000174 IA1_00875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DeoR family transcriptional regulator YP_008612007.1 200475 D 1064551 CDS YP_008612008.1 549478276 complement(201272..202066) 1 NC_022525.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine decarboxylase 202066 1064551000175 IA1_00880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 S-adenosylmethionine decarboxylase YP_008612008.1 201272 R 1064551 CDS YP_008612009.1 549478277 complement(202087..202947) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; spermidine synthase 202947 1064551000176 IA1_00885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 spermidine synthase YP_008612009.1 202087 R 1064551 CDS YP_008612010.1 549478278 complement(203054..203401) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 203401 1064551000177 IA1_00890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612010.1 203054 R 1064551 CDS YP_008612011.1 549478279 203603..205213 1 NC_022525.1 laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; Derived by automated computational analysis using gene prediction method: Protein Homology.; multicopper oxidase 205213 1064551000178 IA1_00895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multicopper oxidase YP_008612011.1 203603 D 1064551 CDS YP_008612012.1 549478280 complement(205291..207681) 1 NC_022525.1 quinoprotein glucose dehydrogenase; catalyzes the formation of D-glucono-1,5-lactone from D-glucose and ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose dehydrogenase 207681 1064551000179 IA1_00900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucose dehydrogenase YP_008612012.1 205291 R 1064551 CDS YP_008612013.1 549478281 207887..208423 1 NC_022525.1 catalyzes the formation of inosine monophosphate from hypoxanthine and 5-phospho-alpha-D-ribose 1-diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypoxanthine phosphoribosyltransferase 208423 1064551000180 IA1_00905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypoxanthine phosphoribosyltransferase YP_008612013.1 207887 D 1064551 CDS YP_008612014.1 549478282 complement(208481..209143) 1 NC_022525.1 catalyzes the interconversion of bicarbonate and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbonic anhydrase 209143 1064551000181 IA1_00910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbonic anhydrase YP_008612014.1 208481 R 1064551 CDS YP_008612015.1 549478283 209252..210178 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein 210178 1064551000182 IA1_00915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug ABC transporter ATP-binding protein YP_008612015.1 209252 D 1064551 CDS YP_008612016.1 549478284 210175..210945 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 210945 1064551000183 IA1_00920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612016.1 210175 D 1064551 CDS YP_008612017.1 549478285 complement(211062..212141) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein StiH 212141 1064551000184 IA1_00925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein StiH YP_008612017.1 211062 R 1064551 CDS YP_008612018.1 549478286 complement(212150..214696) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial outer membrane usher protein SthC 214696 1064551000185 IA1_00930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial outer membrane usher protein SthC YP_008612018.1 212150 R 1064551 CDS YP_008612019.1 549478287 complement(214723..215406) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial assembly chaperone 215406 1064551000186 IA1_00935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial assembly chaperone YP_008612019.1 214723 R 1064551 CDS YP_008612020.1 549478288 complement(215454..215993) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein StiA 215993 1064551000187 IA1_00940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein StiA YP_008612020.1 215454 R 1064551 CDS YP_008612021.1 549478289 216363..216803 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIA 216803 1064551000188 IA1_00945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sugar transporter subunit IIA YP_008612021.1 216363 D 1064551 CDS YP_008612022.1 549478290 216865..218094 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 218094 1064551000189 IA1_00950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612022.1 216865 D 1064551 CDS YP_008612023.1 549481693 complement(218096..219157) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein 219157 1064551000190 IA1_00955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein YP_008612023.1 218096 R 1064551 CDS YP_008612024.1 549481694 complement(219169..219768) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein 219768 1064551000191 IA1_00960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein YP_008612024.1 219169 R 1064551 CDS YP_008612025.1 549481695 complement(219787..220344) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein 220344 1064551000192 IA1_00965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein YP_008612025.1 219787 R 1064551 CDS YP_008612026.1 549481696 complement(220371..220943) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein 220943 1064551000193 IA1_00970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein YP_008612026.1 220371 R 1064551 CDS YP_008612027.1 549481697 complement(220978..223575) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial outer membrane usher protein 223575 1064551000194 IA1_00975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial outer membrane usher protein YP_008612027.1 220978 R 1064551 CDS YP_008612028.1 549478291 complement(223643..224395) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial assembly chaperone protein StcB 224395 1064551000195 IA1_00980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial assembly chaperone protein StcB YP_008612028.1 223643 R 1064551 CDS YP_008612029.1 549481698 complement(224482..225087) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein StkA 225087 1064551000196 IA1_00985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein StkA YP_008612029.1 224482 R 1064551 CDS YP_008612030.1 549478292 complement(225364..225744) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate decarboxylase 225744 1064551000197 IA1_00990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aspartate decarboxylase YP_008612030.1 225364 R 1064551 CDS YP_008612031.1 549478293 complement(225839..226693) 1 NC_022525.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; pantoate--beta-alanine ligase 226693 panC 1064551000198 panC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pantoate--beta-alanine ligase YP_008612031.1 225839 R 1064551 CDS YP_008612032.1 549478294 complement(226819..227610) 1 NC_022525.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-methyl-2-oxobutanoate hydroxymethyltransferase 227610 panB 1064551000199 panB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_008612032.1 226819 R 1064551 CDS YP_008612033.1 549478295 complement(227731..228210) 1 NC_022525.1 catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 228210 1064551000200 IA1_01005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_008612033.1 227731 R 1064551 CDS YP_008612034.1 549478296 complement(228207..229625) 1 NC_022525.1 Polymerase that creates the 3' poly(A) tail found in some mRNA's; Derived by automated computational analysis using gene prediction method: Protein Homology.; poly(A) polymerase I 229625 pcnB 1064551000201 pcnB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 poly(A) polymerase I YP_008612034.1 228207 R 1064551 CDS YP_008612035.1 549478297 complement(229766..230707) 1 NC_022525.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamyl-Q tRNA(Asp) ligase 230707 1064551000202 IA1_01015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamyl-Q tRNA(Asp) ligase YP_008612035.1 229766 R 1064551 CDS YP_008612036.1 549478298 complement(230731..231186) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 231186 dksA 1064551000203 dksA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612036.1 230731 R 1064551 CDS YP_008612037.1 549478299 complement(231363..232067) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 232067 1064551000204 IA1_01025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612037.1 231363 R 1064551 CDS YP_008612038.1 549478300 complement(232084..232614) 1 NC_022525.1 catalyzes the ligation and cleavage of of 2'-5' linkages in RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2'-5' RNA ligase 232614 1064551000205 IA1_01030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2'-5' RNA ligase YP_008612038.1 232084 R 1064551 CDS YP_008612039.1 549478301 232642..235116 1 NC_022525.1 similar in sequence to the ATP-dependent RNA helicase HrpA; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 235116 1064551000206 IA1_01035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA helicase YP_008612039.1 232642 D 1064551 CDS YP_008612040.1 549481699 235257..237779 1 NC_022525.1 penicillin-binding protein 1b; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; bifunctional glycosyl transferase/transpeptidase 237779 mrcB 1064551000207 mrcB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional glycosyl transferase/transpeptidase YP_008612040.1 235257 D 1064551 CDS YP_008612041.1 549478302 238072..240261 1 NC_022525.1 involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferrichrome outer membrane transporter 240261 1064551000208 IA1_01045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferrichrome outer membrane transporter YP_008612041.1 238072 D 1064551 CDS YP_008612042.1 549481700 240310..241107 1 NC_022525.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; iron-hydroxamate transporter ATP-binding protein 241107 1064551000209 IA1_01050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron-hydroxamate transporter ATP-binding protein YP_008612042.1 240310 D 1064551 CDS YP_008612043.1 549478303 241107..241997 1 NC_022525.1 Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-hydroxamate transporter substrate-binding subunit 241997 1064551000210 IA1_01055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron-hydroxamate transporter substrate-binding subunit YP_008612043.1 241107 D 1064551 CDS YP_008612044.1 549478304 241994..244051 1 NC_022525.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-hydroxamate transporter permease subunit 244051 1064551000211 IA1_01060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron-hydroxamate transporter permease subunit YP_008612044.1 241994 D 1064551 CDS YP_008612045.1 549478305 244991..245551 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 245551 1064551000212 IA1_01065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein YP_008612045.1 244991 D 1064551 CDS YP_008612046.1 549478306 245637..248294 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein SteB 248294 1064551000213 IA1_01070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein SteB YP_008612046.1 245637 D 1064551 CDS YP_008612047.1 549478307 248312..249064 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone protein StdC 249064 1064551000214 IA1_01075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial chaperone protein StdC YP_008612047.1 248312 D 1064551 CDS YP_008612048.1 549478308 249083..249595 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 249595 1064551000215 IA1_01080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612048.1 249083 D 1064551 CDS YP_008612049.1 549478309 249592..250068 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein SteE 250068 1064551000216 IA1_01085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein SteE YP_008612049.1 249592 D 1064551 CDS YP_008612050.1 549478310 250068..250598 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 250598 1064551000217 IA1_01090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein YP_008612050.1 250068 D 1064551 CDS YP_008612051.1 549481701 250667..251437 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 251437 1064551000218 IA1_01095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612051.1 250667 D 1064551 CDS YP_008612052.1 549478311 complement(251545..252825) 1 NC_022525.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate-1-semialdehyde aminotransferase 252825 1064551000219 IA1_01100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamate-1-semialdehyde aminotransferase YP_008612052.1 251545 R 1064551 CDS YP_008612053.1 549478312 252995..254416 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; H(+)/Cl(-) exchange transporter ClcA 254416 1064551000220 IA1_01105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 H(+)/Cl(-) exchange transporter ClcA YP_008612053.1 252995 D 1064551 CDS YP_008612054.1 549478313 254498..254842 1 NC_022525.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster insertion protein ErpA 254842 1064551000221 IA1_01110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron-sulfur cluster insertion protein ErpA YP_008612054.1 254498 D 1064551 CDS YP_008612055.1 549478314 complement(254943..255566) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 255566 1064551000222 IA1_01115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612055.1 254943 R 1064551 CDS YP_008612056.1 549478315 complement(255603..256403) 1 NC_022525.1 solute binding component of the vitamin B12 transport system BtuCDF; Derived by automated computational analysis using gene prediction method: Protein Homology.; vitamin B12 transporter 256403 1064551000223 IA1_01120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 vitamin B12 transporter YP_008612056.1 255603 R 1064551 CDS YP_008612057.1 549478316 complement(256396..257094) 1 NC_022525.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 257094 1064551000224 IA1_01125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_008612057.1 256396 R 1064551 CDS YP_008612058.1 549478317 257179..258696 1 NC_022525.1 forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyguanosinetriphosphate triphosphohydrolase 258696 dgt 1064551000225 dgt Salmonella enterica subsp. enterica serovar Thompson str. RM6836 deoxyguanosinetriphosphate triphosphohydrolase YP_008612058.1 257179 D 1064551 CDS YP_008612059.1 549478318 258826..260253 1 NC_022525.1 protease Do; required at high temperature; degrades damaged proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine endoprotease 260253 1064551000226 IA1_01135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 serine endoprotease YP_008612059.1 258826 D 1064551 CDS YP_008612060.1 549481702 260406..261563 1 NC_022525.1 regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; CdaR family transcriptional regulator 261563 1064551000227 IA1_01140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 CdaR family transcriptional regulator YP_008612060.1 260406 D 1064551 CDS YP_008612061.1 549478319 complement(261652..262038) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 262038 1064551000228 IA1_01145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612061.1 261652 R 1064551 CDS YP_008612062.1 549478320 262285..263586 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 263586 1064551000229 IA1_01150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008612062.1 262285 D 1064551 CDS YP_008612063.1 549478321 complement(263623..264447) 1 NC_022525.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 264447 dapD 1064551000230 dapD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_008612063.1 263623 R 1064551 CDS YP_008612064.1 549478322 complement(264477..267149) 1 NC_022525.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; PII uridylyl-transferase 267149 1064551000231 IA1_01160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PII uridylyl-transferase YP_008612064.1 264477 R 1064551 CDS YP_008612065.1 549478323 complement(267387..268181) 1 NC_022525.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine aminopeptidase 268181 1064551000232 IA1_01165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methionine aminopeptidase YP_008612065.1 267387 R 1064551 CDS YP_008612066.1 549478324 268632..269357 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S2 269357 1064551000233 IA1_01170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S2 YP_008612066.1 268632 D 1064551 CDS YP_008612067.1 549478325 269615..270466 1 NC_022525.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; Derived by automated computational analysis using gene prediction method: Protein Homology.; endo-1,4-D-glucanase 270466 tsf 1064551000234 tsf Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endo-1,4-D-glucanase YP_008612067.1 269615 D 1064551 CDS YP_008612068.1 549478326 270611..271336 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; uridylate kinase 271336 1064551000235 IA1_01180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 uridylate kinase YP_008612068.1 270611 D 1064551 CDS YP_008612069.1 549478327 271483..272040 1 NC_022525.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome recycling factor 272040 frr 1064551000236 frr Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribosome recycling factor YP_008612069.1 271483 D 1064551 CDS YP_008612070.1 549478328 272181..273377 1 NC_022525.1 catalyzes the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 273377 1064551000237 IA1_01190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_008612070.1 272181 D 1064551 CDS YP_008612071.1 549478329 273690..274448 1 NC_022525.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP pyrophosphate synthase 274448 1064551000238 IA1_01195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP pyrophosphate synthase YP_008612071.1 273690 D 1064551 CDS YP_008612072.1 549478330 274461..275318 1 NC_022525.1 catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; Derived by automated computational analysis using gene prediction method: Protein Homology.; CDP-diglyceride synthase 275318 cdsA 1064551000239 cdsA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 CDP-diglyceride synthase YP_008612072.1 274461 D 1064551 CDS YP_008612073.1 549478331 275330..276682 1 NC_022525.1 catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc metallopeptidase RseP 276682 1064551000240 IA1_01205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 zinc metallopeptidase RseP YP_008612073.1 275330 D 1064551 CDS YP_008612074.1 549478332 276714..279128 1 NC_022525.1 part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein assembly factor YaeT 279128 1064551000241 IA1_01210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane protein assembly factor YaeT YP_008612074.1 276714 D 1064551 CDS YP_008612075.1 549478333 279251..279736 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone 279736 1064551000242 IA1_01215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chaperone YP_008612075.1 279251 D 1064551 CDS YP_008612076.1 549478334 279740..280765 1 NC_022525.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 280765 lpxD 1064551000243 lpxD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_008612076.1 279740 D 1064551 CDS YP_008612077.1 549478335 280871..281326 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxymyristoyl-ACP dehydratase 281326 1064551000244 IA1_01225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydroxymyristoyl-ACP dehydratase YP_008612077.1 280871 D 1064551 CDS YP_008612078.1 549478336 281330..282118 1 NC_022525.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylglucosamine acyltransferase 282118 1064551000245 IA1_01230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-N-acetylglucosamine acyltransferase YP_008612078.1 281330 D 1064551 CDS YP_008612079.1 549478337 282118..283266 1 NC_022525.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid-A-disaccharide synthase 283266 lpxB 1064551000246 lpxB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipid-A-disaccharide synthase YP_008612079.1 282118 D 1064551 CDS YP_008612080.1 549478338 283263..283859 1 NC_022525.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease HII 283859 rnhB 1064551000247 rnhB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonuclease HII YP_008612080.1 283263 D 1064551 CDS YP_008612081.1 549478339 283883..287365 1 NC_022525.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit alpha 287365 dnaE 1064551000248 dnaE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA polymerase III subunit alpha YP_008612081.1 283883 D 1064551 CDS YP_008612082.1 549478340 287378..288337 1 NC_022525.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase subunit alpha 288337 1064551000249 IA1_01250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetyl-CoA carboxylase subunit alpha YP_008612082.1 287378 D 1064551 CDS YP_008612083.1 549478341 288518..290281 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; chitinase 290281 1064551000250 IA1_01255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chitinase YP_008612083.1 288518 D 1064551 CDS YP_008612084.1 549478342 290357..292498 1 NC_022525.1 constitutive; catalyzes the formation of cadaverine from lysine; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine decarboxylase CadA 292498 1064551000251 IA1_01260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lysine decarboxylase CadA YP_008612084.1 290357 D 1064551 CDS YP_008612085.1 549478343 292554..292943 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lyase 292943 1064551000252 IA1_01265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lyase YP_008612085.1 292554 D 1064551 CDS YP_008612086.1 549478344 293006..294298 1 NC_022525.1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA(Ile)-lysidine ligase 294298 tilS 1064551000253 tilS Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA(Ile)-lysidine ligase YP_008612086.1 293006 D 1064551 CDS YP_008612087.1 549481703 complement(294382..294642) 1 NC_022525.1 Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Rho-binding antiterminator 294642 1064551000254 IA1_01275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Rho-binding antiterminator YP_008612087.1 294382 R 1064551 CDS YP_008612088.1 549481704 complement(294629..294829) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 294829 1064551000255 IA1_01280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612088.1 294629 R 1064551 CDS YP_008612089.1 549478345 295027..295572 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 295572 1064551000256 IA1_01285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612089.1 295027 D 1064551 CDS YP_008612090.1 549478346 295569..295991 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 295991 1064551000257 IA1_01290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612090.1 295569 D 1064551 CDS YP_008612091.1 549481705 296143..296724 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lipoprotein involved with copper homeostasis and adhesion 296724 1064551000258 IA1_01295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein involved with copper homeostasis and adhesion YP_008612091.1 296143 D 1064551 CDS YP_008612092.1 549478347 complement(296803..298521) 1 NC_022525.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); Derived by automated computational analysis using gene prediction method: Protein Homology.; prolyl-tRNA synthetase 298521 1064551000259 IA1_01300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 prolyl-tRNA synthetase YP_008612092.1 296803 R 1064551 CDS YP_008612093.1 549478348 complement(298632..299339) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 299339 1064551000260 IA1_01305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612093.1 298632 R 1064551 CDS YP_008612094.1 549481706 complement(299336..299740) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; outer membrane lipoprotein 299740 rcsF 1064551000261 rcsF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane lipoprotein YP_008612094.1 299336 R 1064551 CDS YP_008612095.1 549478349 complement(299859..300674) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter substrate-binding protein 300674 metQ 1064551000262 metQ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methionine ABC transporter substrate-binding protein YP_008612095.1 299859 R 1064551 CDS YP_008612096.1 549478350 complement(300713..301366) 1 NC_022525.1 part of the MetNIQ methionine uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter permease 301366 1064551000263 IA1_01320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methionine ABC transporter permease YP_008612096.1 300713 R 1064551 CDS YP_008612097.1 549478351 complement(301359..302390) 1 NC_022525.1 part of the metNIQ transport system for methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter ATP-binding protein 302390 metN 1064551000264 metN Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methionine ABC transporter ATP-binding protein YP_008612097.1 301359 R 1064551 CDS YP_008612098.1 549481707 302580..303146 1 NC_022525.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; D,D-heptose 1,7-bisphosphate phosphatase 303146 1064551000265 IA1_01330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D,D-heptose 1,7-bisphosphate phosphatase YP_008612098.1 302580 D 1064551 CDS YP_008612099.1 549478352 309154..309957 1 NC_022525.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,5-diketo-D-gluconic acid reductase 309957 dkgB 1064551000272 dkgB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2,5-diketo-D-gluconic acid reductase YP_008612099.1 309154 D 1064551 CDS YP_008612100.1 549478353 complement(309978..310892) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 310892 1064551000273 IA1_01370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcripitonal regulator YP_008612100.1 309978 R 1064551 CDS YP_008612101.1 549478354 310997..312172 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar MFS transporter 312172 1064551000274 IA1_01375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar MFS transporter YP_008612101.1 310997 D 1064551 CDS YP_008612102.1 549478355 312304..313104 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 313104 1064551000275 IA1_01380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612102.1 312304 D 1064551 CDS YP_008612103.1 549478356 313182..313952 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB 313952 1064551000276 IA1_01385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB YP_008612103.1 313182 D 1064551 CDS YP_008612104.1 549478357 complement(314008..315375) 1 NC_022525.1 catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 315375 mltD 1064551000277 mltD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612104.1 314008 R 1064551 CDS YP_008612105.1 549478358 complement(315447..316202) 1 NC_022525.1 catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyacylglutathione hydrolase 316202 1064551000278 IA1_01395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydroxyacylglutathione hydrolase YP_008612105.1 315447 R 1064551 CDS YP_008612106.1 549478359 316237..316959 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 316959 1064551000279 IA1_01400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612106.1 316237 D 1064551 CDS YP_008612107.1 549478360 complement(316956..317423) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease H 317423 1064551000280 IA1_01405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonuclease H YP_008612107.1 316956 R 1064551 CDS YP_008612108.1 549478361 317478..318218 1 NC_022525.1 3'-5' exonuclease of DNA polymerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit epsilon 318218 1064551000281 IA1_01410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA polymerase III subunit epsilon YP_008612108.1 317478 D 1064551 CDS YP_008612109.1 549478362 complement(318749..319804) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 319804 1064551000283 IA1_01420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612109.1 318749 R 1064551 CDS YP_008612110.1 549478363 complement(319815..320810) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; SPI-6 associated protein 320810 1064551000284 IA1_01425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 SPI-6 associated protein YP_008612110.1 319815 R 1064551 CDS YP_008612111.1 549481708 complement(320807..322690) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type VI secretion protein 322690 1064551000285 IA1_01430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type VI secretion protein YP_008612111.1 320807 R 1064551 CDS YP_008612112.1 549478364 complement(322706..323200) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoplasmic protein 323200 1064551000286 IA1_01435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytoplasmic protein YP_008612112.1 322706 R 1064551 CDS YP_008612113.1 549478365 complement(323197..324021) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 324021 1064551000287 IA1_01440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612113.1 323197 R 1064551 CDS YP_008612114.1 549478366 complement(324008..324910) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 324910 1064551000288 IA1_01445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612114.1 324008 R 1064551 CDS YP_008612115.1 549478367 325278..327917 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; protein disaggregation chaperone 327917 1064551000289 IA1_01450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protein disaggregation chaperone YP_008612115.1 325278 D 1064551 CDS YP_008612116.1 549478368 328017..328559 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; type VI secretion protein 328559 1064551000290 IA1_01455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type VI secretion protein YP_008612116.1 328017 D 1064551 CDS YP_008612117.1 549478369 328583..330091 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; EvpB family type VI secretion protein 330091 1064551000291 IA1_01460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 EvpB family type VI secretion protein YP_008612117.1 328583 D 1064551 CDS YP_008612118.1 549478370 330977..331462 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Hcp1 family type VI secretion system effector 331462 1064551000292 IA1_01465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Hcp1 family type VI secretion system effector YP_008612118.1 330977 D 1064551 CDS YP_008612119.1 549478371 331765..332250 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 332250 1064551000293 IA1_01470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612119.1 331765 D 1064551 CDS YP_008612120.1 549478372 332235..332618 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 332618 1064551000294 IA1_01475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612120.1 332235 D 1064551 CDS YP_008612121.1 549478373 332761..333246 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Hcp1 family type VI secretion system effector 333246 1064551000295 IA1_01480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Hcp1 family type VI secretion system effector YP_008612121.1 332761 D 1064551 CDS YP_008612122.1 549478374 333313..333849 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein 333849 1064551000296 IA1_01485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane lipoprotein YP_008612122.1 333313 D 1064551 CDS YP_008612123.1 549478375 333853..335196 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; type VI secretion protein 335196 1064551000297 IA1_01490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type VI secretion protein YP_008612123.1 333853 D 1064551 CDS YP_008612124.1 549478376 335193..336497 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 336497 1064551000298 IA1_01495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612124.1 335193 D 1064551 CDS YP_008612125.1 549481709 336502..337275 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 337275 1064551000299 IA1_01500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612125.1 336502 D 1064551 CDS YP_008612126.1 549478377 337466..337909 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Shiga toxin A subunit 337909 1064551000300 IA1_01505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Shiga toxin A subunit YP_008612126.1 337466 D 1064551 CDS YP_008612127.1 549478378 337943..341812 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 341812 1064551000301 IA1_01510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612127.1 337943 D 1064551 CDS YP_008612128.1 549478379 341812..342579 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 342579 1064551000302 IA1_01515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612128.1 341812 D 1064551 CDS YP_008612129.1 549481710 342622..343092 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 343092 1064551000303 IA1_01520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612129.1 342622 D 1064551 CDS YP_008612130.1 549481711 343695..344081 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 344081 1064551000305 IA1_01525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612130.1 343695 D 1064551 CDS YP_008612131.1 549481712 344108..344626 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; SPI-6 associated protein 344626 1064551000306 IA1_01530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 SPI-6 associated protein YP_008612131.1 344108 D 1064551 CDS YP_008612132.1 549478380 345023..347212 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; type VI secretion protein Vgr 347212 1064551000307 IA1_01535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type VI secretion protein Vgr YP_008612132.1 345023 D 1064551 CDS YP_008612133.1 549478381 347236..347682 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 347682 1064551000308 IA1_01540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612133.1 347236 D 1064551 CDS YP_008612134.1 549481713 347701..351789 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs 351789 1064551000309 IA1_01545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type IV secretion protein Rhs YP_008612134.1 347701 D 1064551 CDS YP_008612135.1 549481714 351799..352644 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; toxin 352644 1064551000310 IA1_01550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 toxin YP_008612135.1 351799 D 1064551 CDS YP_008612136.1 549481715 352759..353940 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 353940 1064551000311 IA1_01555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612136.1 352759 D 1064551 CDS YP_008612137.1 549481716 353934..354197 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 354197 1064551000312 IA1_01560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612137.1 353934 D 1064551 CDS YP_008612138.1 549481717 354297..355154 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 355154 1064551000313 IA1_01565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612138.1 354297 D 1064551 CDS YP_008612139.1 549481718 complement(355945..356145) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 356145 1064551000314 IA1_01570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612139.1 355945 R 1064551 CDS YP_008612140.1 549481719 356256..359087 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs 359087 1064551000315 IA1_01575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type IV secretion protein Rhs YP_008612140.1 356256 D 1064551 CDS YP_008612141.1 549481720 359104..359529 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 359529 1064551000316 IA1_01580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612141.1 359104 D 1064551 CDS YP_008612142.1 549481721 359672..360970 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs 360970 1064551000317 IA1_01585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type IV secretion protein Rhs YP_008612142.1 359672 D 1064551 CDS YP_008612143.1 549481722 360967..361401 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 361401 1064551000318 IA1_01590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612143.1 360967 D 1064551 CDS YP_008612144.1 549481723 complement(361448..361711) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 361711 1064551000319 IA1_01595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612144.1 361448 R 1064551 CDS YP_008612145.1 549481724 362103..362312 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 362312 1064551000320 IA1_01600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612145.1 362103 D 1064551 CDS YP_008612146.1 549481725 362382..362849 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 362849 1064551000321 IA1_01605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612146.1 362382 D 1064551 CDS YP_008612147.1 549478382 363140..363337 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase 363337 1064551000322 IA1_01615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transposase YP_008612147.1 363140 D 1064551 CDS YP_008612148.1 549481726 363563..363841 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 363841 1064551000323 IA1_01620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 integrase YP_008612148.1 363563 D 1064551 CDS YP_008612149.1 549481727 364636..365130 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 365130 1064551000324 IA1_01625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612149.1 364636 D 1064551 CDS YP_008612150.1 549481728 365263..365760 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 365760 1064551000325 IA1_01630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612150.1 365263 D 1064551 CDS YP_008612151.1 549478383 365835..366575 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; pili assembly chaperone protein SafB 366575 1064551000326 IA1_01635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pili assembly chaperone protein SafB YP_008612151.1 365835 D 1064551 CDS YP_008612152.1 549478384 366599..369109 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; pilin outer membrane usher protein SafC 369109 1064551000327 IA1_01640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pilin outer membrane usher protein SafC YP_008612152.1 366599 D 1064551 CDS YP_008612153.1 549478385 369131..369601 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; pilin structural protein SafD 369601 1064551000328 IA1_01645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pilin structural protein SafD YP_008612153.1 369131 D 1064551 CDS YP_008612154.1 549478386 370007..370828 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; carbohydrate transporter 370828 1064551000329 IA1_01650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbohydrate transporter YP_008612154.1 370007 D 1064551 CDS YP_008612155.1 549481729 370908..371168 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PerC transcriptional activator 371168 1064551000330 IA1_01655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PerC transcriptional activator YP_008612155.1 370908 D 1064551 CDS YP_008612156.1 549481730 371359..371442 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase TnpA 371442 1064551000331 IA1_01660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transposase TnpA YP_008612156.1 371359 D 1064551 CDS YP_008612157.1 549478387 371645..372592 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 372592 1064551000332 IA1_01665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612157.1 371645 D 1064551 CDS YP_008612158.1 549478388 complement(372931..373650) 1 NC_022525.1 mediates invasion via interaction with proteoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; adhesin 373650 1064551000333 IA1_01670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adhesin YP_008612158.1 372931 R 1064551 CDS YP_008612159.1 549478389 complement(373981..374388) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; VirG 374388 1064551000334 IA1_01675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 VirG YP_008612159.1 373981 R 1064551 CDS YP_008612160.1 549478390 complement(374698..375465) 1 NC_022525.1 NAD(P)-binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; C-N hydrolase family amidase 375465 1064551000335 IA1_01680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 C-N hydrolase family amidase YP_008612160.1 374698 R 1064551 CDS YP_008612161.1 549478391 complement(375574..378018) 1 NC_022525.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase 378018 fadE 1064551000336 fadE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyl-CoA dehydrogenase YP_008612161.1 375574 R 1064551 CDS YP_008612162.1 549478392 378258..378836 1 NC_022525.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoheptose isomerase 378836 gmhA 1064551000337 gmhA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoheptose isomerase YP_008612162.1 378258 D 1064551 CDS YP_008612163.1 549478393 379049..379816 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine amidotransferase 379816 1064551000338 IA1_01695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamine amidotransferase YP_008612163.1 379049 D 1064551 CDS YP_008612164.1 549478394 complement(379787..380527) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transpeptidase 380527 1064551000339 IA1_01700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transpeptidase YP_008612164.1 379787 R 1064551 CDS YP_008612165.1 549478395 380777..381832 1 NC_022525.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase IV 381832 1064551000340 IA1_01705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA polymerase IV YP_008612165.1 380777 D 1064551 CDS YP_008612166.1 549481731 382051..383190 1 NC_022525.1 mutations in this gene result in a compromised ability for drug-inducible mexXY expression; expression is inducible by the same ribosome-targeting agents that induce mexXY; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 383190 1064551000341 IA1_01710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612166.1 382051 D 1064551 CDS YP_008612167.1 549478396 383187..383801 1 NC_022525.1 similar to release factor 1 and 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 383801 prfH 1064551000342 prfH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide chain release factor YP_008612167.1 383187 D 1064551 CDS YP_008612168.1 549478397 complement(383957..385414) 1 NC_022525.1 catalyzes the hydrolysis of Xaa-His dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoacyl-histidine dipeptidase 385414 1064551000343 IA1_01720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aminoacyl-histidine dipeptidase YP_008612168.1 383957 R 1064551 CDS YP_008612169.1 549478398 385663..386121 1 NC_022525.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine phosphoribosyltransferase 386121 1064551000344 IA1_01725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 xanthine phosphoribosyltransferase YP_008612169.1 385663 D 1064551 CDS YP_008612170.1 549478399 386210..387454 1 NC_022525.1 forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; Derived by automated computational analysis using gene prediction method: Protein Homology.; fermentation/respiration switch protein 387454 frsA 1064551000345 frsA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fermentation/respiration switch protein YP_008612170.1 386210 D 1064551 CDS YP_008612171.1 549481732 387512..387913 1 NC_022525.1 involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 387913 1064551000346 IA1_01735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612171.1 387512 D 1064551 CDS YP_008612172.1 549478400 complement(387964..389016) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane phosphoporin protein E 389016 1064551000347 IA1_01740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane phosphoporin protein E YP_008612172.1 387964 R 1064551 CDS YP_008612173.1 549478401 389299..390402 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyl kinase 390402 1064551000348 IA1_01745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 gamma-glutamyl kinase YP_008612173.1 389299 D 1064551 CDS YP_008612174.1 549478402 390414..391664 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyl phosphate reductase 391664 1064551000349 IA1_01750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 gamma-glutamyl phosphate reductase YP_008612174.1 390414 D 1064551 CDS YP_008612175.1 549478403 complement(392291..393157) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS3 393157 1064551000351 IA1_01760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transposase IS3 YP_008612175.1 392291 R 1064551 CDS YP_008612176.1 549478404 complement(393154..393462) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS3 393462 1064551000352 IA1_01765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transposase IS3 YP_008612176.1 393154 R 1064551 CDS YP_008612177.1 549481733 393520..393888 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycerol dehydratase 393888 1064551000353 IA1_01770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerol dehydratase YP_008612177.1 393520 D 1064551 CDS YP_008612178.1 549481734 393854..393961 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 393961 1064551000354 IA1_01775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612178.1 393854 D 1064551 CDS YP_008612179.1 549481735 394095..394394 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 394394 1064551000355 IA1_01780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612179.1 394095 D 1064551 CDS YP_008612180.1 549478405 394637..395974 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 395974 1064551000356 IA1_01785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 permease YP_008612180.1 394637 D 1064551 CDS YP_008612181.1 549478406 396106..397527 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydratase large subunit 397527 1064551000357 IA1_01790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-isopropylmalate dehydratase large subunit YP_008612181.1 396106 D 1064551 CDS YP_008612182.1 549478407 397529..398155 1 NC_022525.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; Derived by automated computational analysis using gene prediction method: Protein Homology.; isopropylmalate isomerase 398155 leuD 1064551000358 leuD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 isopropylmalate isomerase YP_008612182.1 397529 D 1064551 CDS YP_008612183.1 549478408 398170..399048 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 399048 1064551000359 IA1_01800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase YP_008612183.1 398170 D 1064551 CDS YP_008612184.1 549478409 399048..399962 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 399962 1064551000360 IA1_01805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrolase YP_008612184.1 399048 D 1064551 CDS YP_008612185.1 549478410 399996..400961 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 400961 1064551000361 IA1_01810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcriptional regulator YP_008612185.1 399996 D 1064551 CDS YP_008612186.1 549481736 401869..402267 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 402267 1064551000363 IA1_01820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612186.1 401869 D 1064551 CDS YP_008612187.1 549478411 complement(402314..403072) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial assembly chaperone StbE 403072 1064551000364 IA1_01825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial assembly chaperone StbE YP_008612187.1 402314 R 1064551 CDS YP_008612188.1 549478412 complement(403038..404363) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial usher protein StbD 404363 1064551000365 IA1_01830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial usher protein StbD YP_008612188.1 403038 R 1064551 CDS YP_008612189.1 549478413 complement(404368..406941) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial outer membrane usher protein StbC 406941 1064551000366 IA1_01835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial outer membrane usher protein StbC YP_008612189.1 404368 R 1064551 CDS YP_008612190.1 549481737 complement(406925..407545) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial chaperone protein StbB 407545 1064551000367 IA1_01840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial chaperone protein StbB YP_008612190.1 406925 R 1064551 CDS YP_008612191.1 549481738 complement(407748..408284) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein 408284 1064551000368 IA1_01845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein YP_008612191.1 407748 R 1064551 CDS YP_008612192.1 549478414 408948..409682 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator 409682 1064551000369 IA1_01850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 response regulator YP_008612192.1 408948 D 1064551 CDS YP_008612193.1 549478415 409655..410155 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 410155 1064551000370 IA1_01855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612193.1 409655 D 1064551 CDS YP_008612194.1 549481739 410479..412029 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; rtn protein 412029 1064551000371 IA1_01860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 rtn protein YP_008612194.1 410479 D 1064551 CDS YP_008612195.1 549478416 412129..412872 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator 412872 1064551000372 IA1_01865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 response regulator YP_008612195.1 412129 D 1064551 CDS YP_008612196.1 549478417 412845..413333 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 413333 1064551000373 IA1_01870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612196.1 412845 D 1064551 CDS YP_008612197.1 549478418 413735..414259 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 414259 1064551000374 IA1_01875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612197.1 413735 D 1064551 CDS YP_008612198.1 549478419 414403..415044 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator 415044 1064551000375 IA1_01880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 response regulator YP_008612198.1 414403 D 1064551 CDS YP_008612199.1 549481740 415055..415279 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 415279 1064551000376 IA1_01885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612199.1 415055 D 1064551 CDS YP_008612200.1 549478420 415337..415696 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 415696 1064551000377 IA1_01890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein YP_008612200.1 415337 D 1064551 CDS YP_008612201.1 549478421 complement(415766..417256) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 417256 1064551000378 IA1_01895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008612201.1 415766 R 1064551 CDS YP_008612202.1 549478422 complement(417240..420407) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 420407 1064551000379 IA1_01900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008612202.1 417240 R 1064551 CDS YP_008612203.1 549481741 complement(420404..421630) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transporter 421630 1064551000380 IA1_01905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008612203.1 420404 R 1064551 CDS YP_008612204.1 549481742 421907..424210 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ATPase 424210 1064551000381 IA1_01910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATPase YP_008612204.1 421907 D 1064551 CDS YP_008612205.1 549478423 424207..424671 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 424671 1064551000382 IA1_01915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612205.1 424207 D 1064551 CDS YP_008612206.1 549478424 424749..424943 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Heavy-metal-associated domain-containing protein 424943 1064551000383 IA1_01920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Heavy-metal-associated domain-containing protein YP_008612206.1 424749 D 1064551 CDS YP_008612207.1 549478425 425235..426488 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar transporter 426488 1064551000384 IA1_01925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar transporter YP_008612207.1 425235 D 1064551 CDS YP_008612208.1 549478426 426677..428635 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; type III restriction endonuclease StyLTI 428635 1064551000385 IA1_01930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III restriction endonuclease StyLTI YP_008612208.1 426677 D 1064551 CDS YP_008612209.1 549481743 428648..431617 1 NC_022525.1 cleaves DNA 25 basepairs downstream from the recognition site; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III restriction endonuclease StyLTI 431617 1064551000386 IA1_01935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III restriction endonuclease StyLTI YP_008612209.1 428648 D 1064551 CDS YP_008612210.1 549478427 432112..433515 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome D ubiquinol oxidase subunit I 433515 1064551000387 IA1_01940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome D ubiquinol oxidase subunit I YP_008612210.1 432112 D 1064551 CDS YP_008612211.1 549478428 433512..434522 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ubiquinol oxidase subunit II, cyanide insensitive 434522 1064551000388 IA1_01945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ubiquinol oxidase subunit II, cyanide insensitive YP_008612211.1 433512 D 1064551 CDS YP_008612212.1 549481744 434860..435864 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; AraC family transcriptional regulator 435864 1064551000389 IA1_01950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 AraC family transcriptional regulator YP_008612212.1 434860 D 1064551 CDS YP_008612213.1 549481745 436022..438118 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ferrioxamine B receptor 438118 1064551000390 IA1_01955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferrioxamine B receptor YP_008612213.1 436022 D 1064551 CDS YP_008612214.1 549478429 complement(438159..438791) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 438791 1064551000391 IA1_01960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612214.1 438159 R 1064551 CDS YP_008612215.1 549478430 439023..439298 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 439298 1064551000392 IA1_01965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612215.1 439023 D 1064551 CDS YP_008612216.1 549478431 complement(439434..441059) 1 NC_022525.1 sigma-54 dependent activator family protein; activates the prpBCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; propionate catabolism operon regulatory protein PrpR 441059 1064551000393 IA1_01970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 propionate catabolism operon regulatory protein PrpR YP_008612216.1 439434 R 1064551 CDS YP_008612217.1 549478432 441325..442212 1 NC_022525.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-methylisocitrate lyase 442212 prpB 1064551000394 prpB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-methylisocitrate lyase YP_008612217.1 441325 D 1064551 CDS YP_008612218.1 549478433 442335..443504 1 NC_022525.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; Derived by automated computational analysis using gene prediction method: Protein Homology.; methylcitrate synthase 443504 1064551000395 IA1_01980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methylcitrate synthase YP_008612218.1 442335 D 1064551 CDS YP_008612219.1 549478434 443544..444995 1 NC_022525.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-methylcitrate dehydratase 444995 prpD 1064551000396 prpD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-methylcitrate dehydratase YP_008612219.1 443544 D 1064551 CDS YP_008612220.1 549478435 445036..446922 1 NC_022525.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA synthetase 446922 prpE 1064551000397 prpE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetyl-CoA synthetase YP_008612220.1 445036 D 1064551 CDS YP_008612221.1 549478436 complement(447029..448003) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; delta-aminolevulinic acid dehydratase 448003 1064551000398 IA1_01995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 delta-aminolevulinic acid dehydratase YP_008612221.1 447029 R 1064551 CDS YP_008612222.1 549478437 448516..451488 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 451488 1064551000399 IA1_02000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612222.1 448516 D 1064551 CDS YP_008612223.1 549478438 451574..452197 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 452197 1064551000400 IA1_02005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612223.1 451574 D 1064551 CDS YP_008612224.1 549478439 complement(452242..453399) 1 NC_022525.1 this protein has no known enzymatic function; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-lactam binding protein AmpH 453399 1064551000401 IA1_02010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 beta-lactam binding protein AmpH YP_008612224.1 452242 R 1064551 CDS YP_008612225.1 549478440 453746..454966 1 NC_022525.1 in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; Derived by automated computational analysis using gene prediction method: Protein Homology.; microcin B17 transporter 454966 1064551000402 IA1_02015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 microcin B17 transporter YP_008612225.1 453746 D 1064551 CDS YP_008612226.1 549478441 454981..456075 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 456075 1064551000403 IA1_02020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612226.1 454981 D 1064551 CDS YP_008612227.1 549478442 complement(456113..456421) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 456421 1064551000404 IA1_02025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612227.1 456113 R 1064551 CDS YP_008612228.1 549481746 complement(456513..456602) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 456602 1064551000405 IA1_02030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612228.1 456513 R 1064551 CDS YP_008612229.1 549478443 456689..456904 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 456904 1064551000406 IA1_02035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612229.1 456689 D 1064551 CDS YP_008612230.1 549478444 complement(456930..458024) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanine--D-alanine ligase 458024 1064551000407 IA1_02040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-alanine--D-alanine ligase YP_008612230.1 456930 R 1064551 CDS YP_008612231.1 549478445 458102..458815 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; extensin 458815 1064551000408 IA1_02045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 extensin YP_008612231.1 458102 D 1064551 CDS YP_008612232.1 549478446 458984..460195 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 460195 1064551000409 IA1_02050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008612232.1 458984 D 1064551 CDS YP_008612233.1 549478447 460492..460752 1 NC_022525.1 RpoS stabilzer during Pi starvation; anti-adapter protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-RssB factor 460752 1064551000410 IA1_02055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 anti-RssB factor YP_008612233.1 460492 D 1064551 CDS YP_008612234.1 549478448 461104..461424 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 461424 1064551000411 IA1_02060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612234.1 461104 D 1064551 CDS YP_008612235.1 549478449 461516..462628 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase 462628 1064551000412 IA1_02065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diguanylate cyclase YP_008612235.1 461516 D 1064551 CDS YP_008612236.1 549478450 complement(462643..463452) 1 NC_022525.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyrroline-5-carboxylate reductase 463452 1064551000413 IA1_02070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyrroline-5-carboxylate reductase YP_008612236.1 462643 R 1064551 CDS YP_008612237.1 549478451 463592..464047 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 464047 1064551000414 IA1_02075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612237.1 463592 D 1064551 CDS YP_008612238.1 549478452 464232..464777 1 NC_022525.1 type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate kinase 464777 aroL 1064551000415 aroL Salmonella enterica subsp. enterica serovar Thompson str. RM6836 shikimate kinase YP_008612238.1 464232 D 1064551 CDS YP_008612239.1 549478453 464804..464995 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 464995 1064551000416 IA1_02085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612239.1 464804 D 1064551 CDS YP_008612240.1 549478454 465246..465923 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 465923 1064551000417 IA1_02090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612240.1 465246 D 1064551 CDS YP_008612241.1 549478455 465994..466278 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 466278 1064551000418 IA1_02095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612241.1 465994 D 1064551 CDS YP_008612242.1 549478456 complement(466316..467227) 1 NC_022525.1 Required for efficient pilin antigenic variation; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase 467227 rdgC 1064551000419 rdgC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 recombinase YP_008612242.1 466316 R 1064551 CDS YP_008612243.1 549478457 467353..468261 1 NC_022525.1 catalyzes phosphorylation of fructose; cytosolic enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructokinase 468261 1064551000420 IA1_02105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fructokinase YP_008612243.1 467353 D 1064551 CDS YP_008612244.1 549478458 complement(468281..469453) 1 NC_022525.1 member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 469453 1064551000421 IA1_02110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MFS transporter YP_008612244.1 468281 R 1064551 CDS YP_008612245.1 549481747 complement(469626..472766) 1 NC_022525.1 with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; exonuclease subunit SbcC 472766 1064551000422 IA1_02115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exonuclease subunit SbcC YP_008612245.1 469626 R 1064551 CDS YP_008612246.1 549478459 complement(472763..473965) 1 NC_022525.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease subunit SbcD 473965 1064551000423 IA1_02120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exonuclease subunit SbcD YP_008612246.1 472763 R 1064551 CDS YP_008612247.1 549481748 complement(473998..474138) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 474138 1064551000424 IA1_02125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612247.1 473998 R 1064551 CDS YP_008612248.1 549478460 474180..474869 1 NC_022525.1 two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; Derived by automated computational analysis using gene prediction method: Protein Homology.; PhoB family transcriptional regulator 474869 1064551000425 IA1_02130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PhoB family transcriptional regulator YP_008612248.1 474180 D 1064551 CDS YP_008612249.1 549478461 474939..476234 1 NC_022525.1 membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate regulon sensor protein 476234 phoR 1064551000426 phoR Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphate regulon sensor protein YP_008612249.1 474939 D 1064551 CDS YP_008612250.1 549478462 476643..477962 1 NC_022525.1 sodium:branched-chain amino acid symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid transporter 2 carrier protein BrnQ 477962 1064551000427 IA1_02140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 branched-chain amino acid transporter 2 carrier protein BrnQ YP_008612250.1 476643 D 1064551 CDS YP_008612251.1 549478463 477977..479407 1 NC_022525.1 cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 479407 proY 1064551000428 proY Salmonella enterica subsp. enterica serovar Thompson str. RM6836 permease YP_008612251.1 477977 D 1064551 CDS YP_008612252.1 549478464 479569..481386 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; maltodextrin glucosidase 481386 1064551000429 IA1_02150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 maltodextrin glucosidase YP_008612252.1 479569 D 1064551 CDS YP_008612253.1 549478465 complement(481458..482060) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peroxiredoxin 482060 1064551000430 IA1_02155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peroxiredoxin YP_008612253.1 481458 R 1064551 CDS YP_008612254.1 549478466 complement(482270..482851) 1 NC_022525.1 Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; ACP phosphodiesterase 482851 1064551000431 IA1_02160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ACP phosphodiesterase YP_008612254.1 482270 R 1064551 CDS YP_008612255.1 549478467 482945..484009 1 NC_022525.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine tRNA ribosyltransferase 484009 queA 1064551000432 queA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 S-adenosylmethionine tRNA ribosyltransferase YP_008612255.1 482945 D 1064551 CDS YP_008612256.1 549478468 484206..485333 1 NC_022525.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); Derived by automated computational analysis using gene prediction method: Protein Homology.; queuine tRNA-ribosyltransferase 485333 tgt 1064551000433 tgt Salmonella enterica subsp. enterica serovar Thompson str. RM6836 queuine tRNA-ribosyltransferase YP_008612256.1 484206 D 1064551 CDS YP_008612257.1 549478469 485356..485688 1 NC_022525.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit YajC 485688 yajC 1064551000434 yajC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 preprotein translocase subunit YajC YP_008612257.1 485356 D 1064551 CDS YP_008612258.1 549478470 485716..487563 1 NC_022525.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecD 487563 secD 1064551000435 secD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 preprotein translocase subunit SecD YP_008612258.1 485716 D 1064551 CDS YP_008612259.1 549478471 487574..488545 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecF 488545 1064551000436 IA1_02185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 preprotein translocase subunit SecF YP_008612259.1 487574 D 1064551 CDS YP_008612260.1 549478472 488693..489058 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glyoxalase 489058 1064551000437 IA1_02190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glyoxalase YP_008612260.1 488693 D 1064551 CDS YP_008612261.1 549478473 489084..489776 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR faimly transcriptional regulator 489776 1064551000438 IA1_02195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DeoR faimly transcriptional regulator YP_008612261.1 489084 D 1064551 CDS YP_008612262.1 549478474 489946..490293 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 490293 1064551000439 IA1_02200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612262.1 489946 D 1064551 CDS YP_008612263.1 549481749 490731..490838 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Toxic polypeptide, small 490838 1064551000440 IA1_02205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Toxic polypeptide, small YP_008612263.1 490731 D 1064551 CDS YP_008612264.1 549478475 complement(490922..491785) 1 NC_022525.1 receptor of phage T6 and colicin K; involved in the transfer of deoxyribo- and ribo-nucleotides across the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; ion channel protein Tsx 491785 1064551000441 IA1_02210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ion channel protein Tsx YP_008612264.1 490922 R 1064551 CDS YP_008612265.1 549478476 complement(492085..492624) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 492624 1064551000442 IA1_02215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612265.1 492085 R 1064551 CDS YP_008612266.1 549481750 492776..493225 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; NrdR family transcriptional regulator 493225 1064551000443 IA1_02220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NrdR family transcriptional regulator YP_008612266.1 492776 D 1064551 CDS YP_008612267.1 549478477 493229..494332 1 NC_022525.1 riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminohydroxyphosphoribosylaminopyrimidine deaminase 494332 ribD 1064551000444 ribD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diaminohydroxyphosphoribosylaminopyrimidine deaminase YP_008612267.1 493229 D 1064551 CDS YP_008612268.1 549478478 494421..494891 1 NC_022525.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6,7-dimethyl-8-ribityllumazine synthase 494891 ribH 1064551000445 ribH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 6,7-dimethyl-8-ribityllumazine synthase YP_008612268.1 494421 D 1064551 CDS YP_008612269.1 549478479 494912..495331 1 NC_022525.1 Regulates rRNA biosynthesis by transcriptional antitermination; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription antitermination protein NusB 495331 nusB 1064551000446 nusB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcription antitermination protein NusB YP_008612269.1 494912 D 1064551 CDS YP_008612270.1 549478480 495413..496393 1 NC_022525.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine monophosphate kinase 496393 1064551000447 IA1_02240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiamine monophosphate kinase YP_008612270.1 495413 D 1064551 CDS YP_008612271.1 549478481 496371..496886 1 NC_022525.1 hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylglycerophosphatase A 496886 1064551000448 IA1_02245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphatidylglycerophosphatase A YP_008612271.1 496371 D 1064551 CDS YP_008612272.1 549478482 complement(496990..497964) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 497964 1064551000449 IA1_02250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase YP_008612272.1 496990 R 1064551 CDS YP_008612273.1 549481751 complement(498021..499883) 1 NC_022525.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 1-deoxy-D-xylulose-5-phosphate synthase 499883 1064551000450 IA1_02255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 1-deoxy-D-xylulose-5-phosphate synthase YP_008612273.1 498021 R 1064551 CDS YP_008612274.1 549478483 complement(499907..500806) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; geranyltranstransferase 500806 1064551000451 IA1_02260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 geranyltranstransferase YP_008612274.1 499907 R 1064551 CDS YP_008612275.1 549478484 complement(500807..501049) 1 NC_022525.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VII small subunit 501049 1064551000452 IA1_02265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exodeoxyribonuclease VII small subunit YP_008612275.1 500807 R 1064551 CDS YP_008612276.1 549478485 501259..502707 1 NC_022525.1 catalyzes the conversion of uridine to 4-thiouridinine tRNA; also required for the synthesis of the thiazole moiety; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA s(4)U8 sulfurtransferase 502707 1064551000453 IA1_02270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA s(4)U8 sulfurtransferase YP_008612276.1 501259 D 1064551 CDS YP_008612277.1 549478486 complement(502751..503548) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate ABC transporter permease 503548 1064551000454 IA1_02275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphonate ABC transporter permease YP_008612277.1 502751 R 1064551 CDS YP_008612278.1 549478487 complement(503551..504411) 1 NC_022525.1 involved in the transport of 2-aminoethylphosphonate into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate ABC transporter permease 504411 1064551000455 IA1_02280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphonate ABC transporter permease YP_008612278.1 503551 R 1064551 CDS YP_008612279.1 549478488 complement(504414..505523) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate ABC transporter ATP-binding protein 505523 1064551000456 IA1_02285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphonate ABC transporter ATP-binding protein YP_008612279.1 504414 R 1064551 CDS YP_008612280.1 549478489 complement(505529..506542) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate ABC transporter substrate-binding protein 506542 1064551000457 IA1_02290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphonate ABC transporter substrate-binding protein YP_008612280.1 505529 R 1064551 CDS YP_008612281.1 549478490 complement(506740..507459) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 507459 1064551000458 IA1_02295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612281.1 506740 R 1064551 CDS YP_008612282.1 549481752 complement(507490..507600) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 507600 1064551000459 IA1_02300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612282.1 507490 R 1064551 CDS YP_008612283.1 549478491 507599..508702 1 NC_022525.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-aminoethylphosphonate:pyruvate aminotransferase 508702 1064551000460 IA1_02305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-aminoethylphosphonate:pyruvate aminotransferase YP_008612283.1 507599 D 1064551 CDS YP_008612284.1 549481753 508712..509521 1 NC_022525.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphonoacetaldehyde hydrolase 509521 1064551000461 IA1_02310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphonoacetaldehyde hydrolase YP_008612284.1 508712 D 1064551 CDS YP_008612285.1 549478492 complement(509618..510208) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidative-stress-resistance chaperone 510208 1064551000462 IA1_02315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidative-stress-resistance chaperone YP_008612285.1 509618 R 1064551 CDS YP_008612286.1 549478493 complement(510171..511082) 1 NC_022525.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-dehydropantoate 2-reductase 511082 1064551000463 IA1_02320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-dehydropantoate 2-reductase YP_008612286.1 510171 R 1064551 CDS YP_008612287.1 549478494 511208..511699 1 NC_022525.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotide-binding protein 511699 1064551000464 IA1_02325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleotide-binding protein YP_008612287.1 511208 D 1064551 CDS YP_008612288.1 549478495 complement(511746..513110) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 513110 1064551000465 IA1_02330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612288.1 511746 R 1064551 CDS YP_008612289.1 549481754 513647..515158 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 515158 1064551000466 IA1_02335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612289.1 513647 D 1064551 CDS YP_008612290.1 549481755 515170..516639 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 516639 1064551000467 IA1_02340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612290.1 515170 D 1064551 CDS YP_008612291.1 549478496 complement(516687..517577) 1 NC_022525.1 converts protoheme IX and farnesyl diphosphate to heme O; Derived by automated computational analysis using gene prediction method: Protein Homology.; protoheme IX farnesyltransferase 517577 1064551000468 IA1_02345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protoheme IX farnesyltransferase YP_008612291.1 516687 R 1064551 CDS YP_008612292.1 549478497 complement(517589..517918) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase 517918 1064551000469 IA1_02350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome O ubiquinol oxidase YP_008612292.1 517589 R 1064551 CDS YP_008612293.1 549478498 complement(517918..518532) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase 518532 1064551000470 IA1_02355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome O ubiquinol oxidase YP_008612293.1 517918 R 1064551 CDS YP_008612294.1 549478499 complement(518522..520513) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase 520513 1064551000471 IA1_02360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome O ubiquinol oxidase YP_008612294.1 518522 R 1064551 CDS YP_008612295.1 549478500 complement(520524..521480) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase 521480 1064551000472 IA1_02365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome O ubiquinol oxidase YP_008612295.1 520524 R 1064551 CDS YP_008612296.1 549478501 complement(521933..523408) 1 NC_022525.1 in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; muropeptide transporter 523408 ampG 1064551000473 ampG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 muropeptide transporter YP_008612296.1 521933 R 1064551 CDS YP_008612297.1 549478502 complement(523452..524081) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 524081 1064551000474 IA1_02375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612297.1 523452 R 1064551 CDS YP_008612298.1 549478503 524334..524651 1 NC_022525.1 positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; BolA family transcriptional regulator 524651 1064551000475 IA1_02380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 BolA family transcriptional regulator YP_008612298.1 524334 D 1064551 CDS YP_008612299.1 549478504 524998..526296 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; trigger factor 526296 1064551000476 IA1_02385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 trigger factor YP_008612299.1 524998 D 1064551 CDS YP_008612300.1 549478505 526544..527167 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Clp protease proteolytic subunit ClpP 527167 1064551000477 IA1_02390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Clp protease proteolytic subunit ClpP YP_008612300.1 526544 D 1064551 CDS YP_008612301.1 549478506 527419..528690 1 NC_022525.1 binds and unfolds substrates as part of the ClpXP protease; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease 528690 clpX 1064551000478 clpX Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-dependent protease YP_008612301.1 527419 D 1064551 CDS YP_008612302.1 549478507 528876..531230 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase 531230 1064551000479 IA1_02400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidase YP_008612302.1 528876 D 1064551 CDS YP_008612303.1 549478508 531439..531711 1 NC_022525.1 histone-like DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 531711 1064551000480 IA1_02405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612303.1 531439 D 1064551 CDS YP_008612304.1 549478509 532002..533873 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; folding chaperone 533873 1064551000481 IA1_02410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 folding chaperone YP_008612304.1 532002 D 1064551 CDS YP_008612305.1 549478510 534023..534397 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 534397 1064551000482 IA1_02415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612305.1 534023 D 1064551 CDS YP_008612306.1 549478511 534501..534899 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; thioesterase 534899 1064551000483 IA1_02420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thioesterase YP_008612306.1 534501 D 1064551 CDS YP_008612307.1 549478512 complement(535005..535700) 1 NC_022525.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; Derived by automated computational analysis using gene prediction method: Protein Homology.; queuosine biosynthesis protein QueC 535700 1064551000484 IA1_02425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 queuosine biosynthesis protein QueC YP_008612307.1 535005 R 1064551 CDS YP_008612308.1 549478513 complement(535765..537465) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 537465 1064551000485 IA1_02430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612308.1 535765 R 1064551 CDS YP_008612309.1 549478514 537566..538384 1 NC_022525.1 HMP-PP phosphatase; catalyzes the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate (HMP-PP) to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate (HMP-P); Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamin pyrimidine pyrophosphate hydrolase 538384 1064551000486 IA1_02435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiamin pyrimidine pyrophosphate hydrolase YP_008612309.1 537566 D 1064551 CDS YP_008612310.1 549478515 complement(538434..539489) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine synthase 539489 1064551000487 IA1_02440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cysteine synthase YP_008612310.1 538434 R 1064551 CDS YP_008612311.1 549481756 539602..540060 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 540060 1064551000488 IA1_02445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612311.1 539602 D 1064551 CDS YP_008612312.1 549478516 540101..541873 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein 541873 1064551000489 IA1_02450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug ABC transporter ATP-binding protein YP_008612312.1 540101 D 1064551 CDS YP_008612313.1 549478517 541866..543647 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein 543647 1064551000490 IA1_02455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug ABC transporter ATP-binding protein YP_008612313.1 541866 D 1064551 CDS YP_008612314.1 549478518 543860..544198 1 NC_022525.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulatory protein P-II 2 544198 1064551000491 IA1_02460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrogen regulatory protein P-II 2 YP_008612314.1 543860 D 1064551 CDS YP_008612315.1 549478519 544230..545516 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ammonium transporter 545516 1064551000492 IA1_02465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ammonium transporter YP_008612315.1 544230 D 1064551 CDS YP_008612316.1 549478520 complement(545616..546476) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA thioesterase 546476 1064551000493 IA1_02470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyl-CoA thioesterase YP_008612316.1 545616 R 1064551 CDS YP_008612317.1 549478521 546691..547260 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 547260 1064551000494 IA1_02475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612317.1 546691 D 1064551 CDS YP_008612318.1 549481757 complement(547293..547604) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 547604 1064551000495 IA1_02480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612318.1 547293 R 1064551 CDS YP_008612319.1 549478522 complement(547913..549463) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic diguanylate phosphodiesterase 549463 1064551000496 IA1_02485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cyclic diguanylate phosphodiesterase YP_008612319.1 547913 R 1064551 CDS YP_008612320.1 549478523 549688..549948 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L31 549948 1064551000497 IA1_02490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L31 YP_008612320.1 549688 D 1064551 CDS YP_008612321.1 549478524 549954..550094 1 NC_022525.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L36 550094 rpmJ 1064551000498 rpmJ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L36 YP_008612321.1 549954 D 1064551 CDS YP_008612322.1 549478525 complement(550150..550620) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 550620 1064551000499 IA1_02500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612322.1 550150 R 1064551 CDS YP_008612323.1 549478526 complement(550738..551289) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose O-acetyltransferase 551289 1064551000500 IA1_02505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 maltose O-acetyltransferase YP_008612323.1 550738 R 1064551 CDS YP_008612324.1 549478527 complement(551468..551686) 1 NC_022525.1 with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; gene expression modulator 551686 1064551000501 IA1_02510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 gene expression modulator YP_008612324.1 551468 R 1064551 CDS YP_008612325.1 549478528 complement(551714..552088) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Hha toxicity attenuator 552088 1064551000502 IA1_02515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Hha toxicity attenuator YP_008612325.1 551714 R 1064551 CDS YP_008612326.1 549478529 complement(552584..555733) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 555733 1064551000503 IA1_02520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008612326.1 552584 R 1064551 CDS YP_008612327.1 549478530 complement(555756..556949) 1 NC_022525.1 with AcrD and TolC forms a transport system involved in resistance to a number of compounds including lipophilic antibiotics; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 556949 1064551000504 IA1_02525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008612327.1 555756 R 1064551 CDS YP_008612328.1 549478531 557091..557744 1 NC_022525.1 regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 557744 1064551000505 IA1_02530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612328.1 557091 D 1064551 CDS YP_008612329.1 549478532 557863..561225 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 561225 1064551000506 IA1_02535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612329.1 557863 D 1064551 CDS YP_008612330.1 549478533 complement(562396..562563) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 562563 1064551000508 IA1_02545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612330.1 562396 R 1064551 CDS YP_008612331.1 549478534 complement(562577..563092) 1 NC_022525.1 PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks; Derived by automated computational analysis using gene prediction method: Protein Homology.; primosomal replication protein N'' 563092 1064551000509 IA1_02550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 primosomal replication protein N'' YP_008612331.1 562577 R 1064551 CDS YP_008612332.1 549481758 563173..563550 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 563550 1064551000510 IA1_02555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612332.1 563173 D 1064551 CDS YP_008612333.1 549478535 563703..564254 1 NC_022525.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine phosphoribosyltransferase 564254 1064551000511 IA1_02560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adenine phosphoribosyltransferase YP_008612333.1 563703 D 1064551 CDS YP_008612334.1 549478536 564368..566296 1 NC_022525.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunits gamma and tau 566296 1064551000512 IA1_02565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA polymerase III subunits gamma and tau YP_008612334.1 564368 D 1064551 CDS YP_008612335.1 549478537 566342..566671 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 566671 1064551000513 IA1_02570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612335.1 566342 D 1064551 CDS YP_008612336.1 549478538 566671..567276 1 NC_022525.1 involved in a recombinational process of DNA repair, independent of the recBC complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase RecR 567276 recR 1064551000514 recR Salmonella enterica subsp. enterica serovar Thompson str. RM6836 recombinase RecR YP_008612336.1 566671 D 1064551 CDS YP_008612337.1 549481759 567387..569261 1 NC_022525.1 molecular chaperone; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; heat shock protein 90 569261 1064551000515 IA1_02580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heat shock protein 90 YP_008612337.1 567387 D 1064551 CDS YP_008612338.1 549478539 569677..570321 1 NC_022525.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylate kinase 570321 adk 1064551000516 adk Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adenylate kinase YP_008612338.1 569677 D 1064551 CDS YP_008612339.1 549478540 570550..571512 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ferrochelatase 571512 1064551000517 IA1_02590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferrochelatase YP_008612339.1 570550 D 1064551 CDS YP_008612340.1 549478541 complement(571509..572480) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl esterase 572480 1064551000518 IA1_02595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetyl esterase YP_008612340.1 571509 R 1064551 CDS YP_008612341.1 549478542 572588..573937 1 NC_022525.1 catalyzes the formation of inosine/guanosine monophosphate from inosine or guanosine and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; inosine/guanosine kinase 573937 1064551000519 IA1_02600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 inosine/guanosine kinase YP_008612341.1 572588 D 1064551 CDS YP_008612342.1 549478543 complement(573986..575662) 1 NC_022525.1 YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; cation:proton antiport protein 575662 1064551000520 IA1_02605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cation:proton antiport protein YP_008612342.1 573986 R 1064551 CDS YP_008612343.1 549481760 575740..575865 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 575865 1064551000521 IA1_02610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612343.1 575740 D 1064551 CDS YP_008612344.1 549478544 complement(575877..577097) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Fosmidomycin resistance protein 577097 1064551000522 IA1_02615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Fosmidomycin resistance protein YP_008612344.1 575877 R 1064551 CDS YP_008612345.1 549478545 577270..578922 1 NC_022525.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-nucleotidase 578922 ushA 1064551000523 ushA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5'-nucleotidase YP_008612345.1 577270 D 1064551 CDS YP_008612346.1 549478546 complement(579038..579517) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 579517 1064551000524 IA1_02625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612346.1 579038 R 1064551 CDS YP_008612347.1 549478547 complement(579719..580513) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 580513 1064551000525 IA1_02630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612347.1 579719 R 1064551 CDS YP_008612348.1 549481761 complement(580599..581426) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 581426 1064551000526 IA1_02635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612348.1 580599 R 1064551 CDS YP_008612349.1 549481762 complement(581580..584081) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; copper exporting ATPase 584081 copA 1064551000527 copA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 copper exporting ATPase YP_008612349.1 581580 R 1064551 CDS YP_008612350.1 549478548 584191..584607 1 NC_022525.1 activator of copper-responsive regulon genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 584607 1064551000528 IA1_02645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612350.1 584191 D 1064551 CDS YP_008612351.1 549478549 complement(584608..585060) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 585060 1064551000529 IA1_02650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612351.1 584608 R 1064551 CDS YP_008612352.1 549478550 complement(585057..585974) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 585974 1064551000530 IA1_02655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protease YP_008612352.1 585057 R 1064551 CDS YP_008612353.1 549481763 586121..586798 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; putrescine/spermidine ABC transporter ATP-binding protein 586798 1064551000531 IA1_02660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 putrescine/spermidine ABC transporter ATP-binding protein YP_008612353.1 586121 D 1064551 CDS YP_008612354.1 549478551 586785..587564 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 587564 1064551000532 IA1_02665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612354.1 586785 D 1064551 CDS YP_008612355.1 549478552 complement(587650..588504) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 588504 1064551000533 IA1_02670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612355.1 587650 R 1064551 CDS YP_008612356.1 549478553 complement(588564..589334) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 589334 1064551000534 IA1_02675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase YP_008612356.1 588564 R 1064551 CDS YP_008612357.1 549478554 complement(589489..590103) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 590103 1064551000535 IA1_02680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 YP_008612357.1 589489 R 1064551 CDS YP_008612358.1 549478555 590074..590760 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter ATP-binding protein 590760 1064551000536 IA1_02685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid ABC transporter ATP-binding protein YP_008612358.1 590074 D 1064551 CDS YP_008612359.1 549478556 590757..593171 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter permease 593171 1064551000537 IA1_02690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar ABC transporter permease YP_008612359.1 590757 D 1064551 CDS YP_008612360.1 549478557 593358..594491 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 594491 1064551000538 IA1_02695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612360.1 593358 D 1064551 CDS YP_008612361.1 549478558 594748..595578 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter ATPase 595578 1064551000539 IA1_02700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methionine ABC transporter ATPase YP_008612361.1 594748 D 1064551 CDS YP_008612362.1 549478559 595615..596631 1 NC_022525.1 part of the metNIQ transport system for methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter ATP-binding protein 596631 metN 1064551000540 metN Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methionine ABC transporter ATP-binding protein YP_008612362.1 595615 D 1064551 CDS YP_008612363.1 549478560 596624..597283 1 NC_022525.1 part of the MetNIQ methionine uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter permease 597283 1064551000541 IA1_02710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methionine ABC transporter permease YP_008612363.1 596624 D 1064551 CDS YP_008612364.1 549478561 complement(597312..598406) 1 NC_022525.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA 2-selenouridine synthase 598406 1064551000542 IA1_02715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA 2-selenouridine synthase YP_008612364.1 597312 R 1064551 CDS YP_008612365.1 549478562 complement(598476..599402) 1 NC_022525.1 activator of the allDC-ylbA operon involved in allantoin utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 599402 1064551000543 IA1_02720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcriptional regulator YP_008612365.1 598476 R 1064551 CDS YP_008612366.1 549478563 599629..600111 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ureidoglycolate hydrolase 600111 1064551000544 IA1_02725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ureidoglycolate hydrolase YP_008612366.1 599629 D 1064551 CDS YP_008612367.1 549478564 600190..601008 1 NC_022525.1 regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator 601008 1064551000545 IA1_02730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IclR family transcriptional regulator YP_008612367.1 600190 D 1064551 CDS YP_008612368.1 549478565 601123..602874 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 602874 1064551000546 IA1_02735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetolactate synthase YP_008612368.1 601123 D 1064551 CDS YP_008612369.1 549478566 602887..603663 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxypyruvate isomerase 603663 1064551000547 IA1_02740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydroxypyruvate isomerase YP_008612369.1 602887 D 1064551 CDS YP_008612370.1 549478567 603764..604642 1 NC_022525.1 NADH-dependent; catalyzed the reversible formation of glycerate from tartronate semialdehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; tartronate semialdehyde reductase 604642 1064551000548 IA1_02745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tartronate semialdehyde reductase YP_008612370.1 603764 D 1064551 CDS YP_008612371.1 549481764 604708..605955 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; MFS transporter 605955 1064551000549 IA1_02750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MFS transporter YP_008612371.1 604708 D 1064551 CDS YP_008612372.1 549481765 606051..607505 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; allantoin permease 607505 1064551000550 IA1_02755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 allantoin permease YP_008612372.1 606051 D 1064551 CDS YP_008612373.1 549481766 607584..608945 1 NC_022525.1 Plays a crucial role on both purine and pyrimidine metabolism; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; allantoinase 608945 1064551000551 IA1_02760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 allantoinase YP_008612373.1 607584 D 1064551 CDS YP_008612374.1 549478568 609004..610302 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; purine permease 610302 1064551000552 IA1_02765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 purine permease YP_008612374.1 609004 D 1064551 CDS YP_008612375.1 549478569 610325..611473 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerate kinase 611473 1064551000553 IA1_02770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerate kinase YP_008612375.1 610325 D 1064551 CDS YP_008612376.1 549478570 complement(611553..612338) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 612338 1064551000554 IA1_02775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612376.1 611553 R 1064551 CDS YP_008612377.1 549478571 complement(612349..613584) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; allantoate amidohydrolase 613584 1064551000555 IA1_02780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 allantoate amidohydrolase YP_008612377.1 612349 R 1064551 CDS YP_008612378.1 549478572 complement(613606..614655) 1 NC_022525.1 catalyzes the formation of oxalurate from ureidoglycolate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ureidoglycolate dehydrogenase 614655 1064551000556 IA1_02785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ureidoglycolate dehydrogenase YP_008612378.1 613606 R 1064551 CDS YP_008612379.1 549478573 614971..616635 1 NC_022525.1 multicopy suppressor of dominant negative ftsH mutations; putative acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 616635 1064551000557 IA1_02790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612379.1 614971 D 1064551 CDS YP_008612380.1 549478574 616645..617904 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 617904 1064551000558 IA1_02795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612380.1 616645 D 1064551 CDS YP_008612381.1 549478575 617916..618725 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 618725 1064551000559 IA1_02800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612381.1 617916 D 1064551 CDS YP_008612382.1 549478576 618729..619622 1 NC_022525.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamate kinase 619622 1064551000560 IA1_02805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbamate kinase YP_008612382.1 618729 D 1064551 CDS YP_008612383.1 549478577 complement(619663..620730) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylaminoimidazole carboxylase 620730 1064551000561 IA1_02810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoribosylaminoimidazole carboxylase YP_008612383.1 619663 R 1064551 CDS YP_008612384.1 549478578 complement(620727..621236) 1 NC_022525.1 catalyzes the formation of 4-carboxy-5-aminoimidazole ribonucleotide from N5-carboxyaminoimidazole ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; N5-carboxyaminoimidazole ribonucleotide mutase 621236 purE 1064551000562 purE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N5-carboxyaminoimidazole ribonucleotide mutase YP_008612384.1 620727 R 1064551 CDS YP_008612385.1 549478579 complement(621354..622076) 1 NC_022525.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-2,3-diacylglucosamine hydrolase 622076 1064551000563 IA1_02820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-2,3-diacylglucosamine hydrolase YP_008612385.1 621354 R 1064551 CDS YP_008612386.1 549478580 complement(622079..622573) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase 622573 1064551000564 IA1_02825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidyl-prolyl cis-trans isomerase YP_008612386.1 622079 R 1064551 CDS YP_008612387.1 549478581 622746..624131 1 NC_022525.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteinyl-tRNA synthetase 624131 cysS 1064551000565 cysS Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cysteinyl-tRNA synthetase YP_008612387.1 622746 D 1064551 CDS YP_008612388.1 549478582 complement(624175..624999) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 624999 1064551000566 IA1_02835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612388.1 624175 R 1064551 CDS YP_008612389.1 549478583 complement(624996..625433) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 625433 1064551000567 IA1_02840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612389.1 624996 R 1064551 CDS YP_008612390.1 549478584 complement(625426..625971) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 625971 1064551000568 IA1_02845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612390.1 625426 R 1064551 CDS YP_008612391.1 549478585 complement(626099..626311) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-associated protein 626311 1064551000569 IA1_02850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribosome-associated protein YP_008612391.1 626099 R 1064551 CDS YP_008612392.1 549478586 complement(626313..627179) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; methenyltetrahydrofolate cyclohydrolase 627179 1064551000570 IA1_02855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methenyltetrahydrofolate cyclohydrolase YP_008612392.1 626313 R 1064551 CDS YP_008612393.1 549478587 627726..628283 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; type-1 fimbrial protein subunit A 628283 fimA 1064551000571 fimA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type-1 fimbrial protein subunit A YP_008612393.1 627726 D 1064551 CDS YP_008612394.1 549478588 628358..628891 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimI 628891 1064551000572 IA1_02865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein FimI YP_008612394.1 628358 D 1064551 CDS YP_008612395.1 549478589 628914..629627 1 NC_022525.1 involved in type 1 fimbriae biosynthesis, interacts with FimH; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone protein FimC 629627 1064551000573 IA1_02870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial chaperone protein FimC YP_008612395.1 628914 D 1064551 CDS YP_008612396.1 549478590 629658..632270 1 NC_022525.1 involved in the export and assembly of fimbrial subunits FimA; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane usher protein FimD 632270 1064551000574 IA1_02875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane usher protein FimD YP_008612396.1 629658 D 1064551 CDS YP_008612397.1 549478591 632285..633292 1 NC_022525.1 involved in the regulation of fimbriae length and mediates adhesion of type 1 fimbriae; Derived by automated computational analysis using gene prediction method: Protein Homology.; adhesin 633292 fimH 1064551000575 fimH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adhesin YP_008612397.1 632285 D 1064551 CDS YP_008612398.1 549478592 633302..633820 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; adhesin 633820 fimF 1064551000576 fimF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adhesin YP_008612398.1 633302 D 1064551 CDS YP_008612399.1 549478593 complement(633866..634498) 1 NC_022525.1 activates the production of the major fimbrae protein FimA; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 634498 1064551000577 IA1_02890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612399.1 633866 R 1064551 CDS YP_008612400.1 549478594 complement(635102..635824) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbriae Y protein 635824 1064551000578 IA1_02895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbriae Y protein YP_008612400.1 635102 R 1064551 CDS YP_008612401.1 549481767 complement(635843..636151) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; diguanylate cyclase 636151 1064551000579 IA1_02900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diguanylate cyclase YP_008612401.1 635843 R 1064551 CDS YP_008612402.1 549478595 complement(636316..636912) 1 NC_022525.1 regulates type 1 fimbriae expression; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbriae regulatory protein FimW 636912 1064551000580 IA1_02905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbriae regulatory protein FimW YP_008612402.1 636316 R 1064551 CDS YP_008612403.1 549481768 complement(637582..637707) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 637707 1064551000582 IA1_02920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transposase YP_008612403.1 637582 R 1064551 CDS YP_008612404.1 549481769 complement(637900..638175) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 638175 1064551000583 IA1_02925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612404.1 637900 R 1064551 CDS YP_008612405.1 549478596 638913..639275 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; translocase 639275 1064551000584 IA1_02930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 translocase YP_008612405.1 638913 D 1064551 CDS YP_008612406.1 549478597 639272..640198 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; bactoprenol glucosyl transferase 640198 1064551000585 IA1_02935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bactoprenol glucosyl transferase YP_008612406.1 639272 D 1064551 CDS YP_008612407.1 549481770 640317..641642 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 641642 1064551000586 IA1_02940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612407.1 640317 D 1064551 CDS YP_008612408.1 549481771 complement(641686..641814) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 641814 1064551000587 IA1_02945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transposase YP_008612408.1 641686 R 1064551 CDS YP_008612409.1 549481772 complement(642280..642390) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 642390 1064551000588 IA1_02950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612409.1 642280 R 1064551 CDS YP_008612410.1 549481773 complement(642418..642576) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 642576 1064551000589 IA1_02955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transposase YP_008612410.1 642418 R 1064551 CDS YP_008612411.1 549481774 complement(642648..642881) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 642881 1064551000590 IA1_02960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transposase YP_008612411.1 642648 R 1064551 CDS YP_008612412.1 549481775 complement(642969..644555) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 644555 1064551000591 IA1_02965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612412.1 642969 R 1064551 CDS YP_008612413.1 549478598 complement(644552..645478) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; bactoprenol glucosyl transferase 645478 1064551000592 IA1_02970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bactoprenol glucosyl transferase YP_008612413.1 644552 R 1064551 CDS YP_008612414.1 549478599 complement(645475..645837) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; translocase 645837 1064551000593 IA1_02975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 translocase YP_008612414.1 645475 R 1064551 CDS YP_008612415.1 549481776 complement(646262..646507) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; copper-binding protein 646507 1064551000594 IA1_02980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 copper-binding protein YP_008612415.1 646262 R 1064551 CDS YP_008612416.1 549481777 complement(646707..647036) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sensor kinase 647036 1064551000595 IA1_02985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensor kinase YP_008612416.1 646707 R 1064551 CDS YP_008612417.1 549481778 647160..647324 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cation transporter 647324 1064551000596 IA1_02990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cation transporter YP_008612417.1 647160 D 1064551 CDS YP_008612418.1 549478600 complement(647375..648229) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 648229 1064551000597 IA1_02995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 AraC family transcriptional regulator YP_008612418.1 647375 R 1064551 CDS YP_008612419.1 549478601 648445..649770 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridine nucleotide-disulfide oxidoreductase 649770 1064551000598 IA1_03000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyridine nucleotide-disulfide oxidoreductase YP_008612419.1 648445 D 1064551 CDS YP_008612420.1 549478602 649927..650163 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 650163 1064551000599 IA1_03005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612420.1 649927 D 1064551 CDS YP_008612421.1 549478603 650176..650736 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 650736 1064551000600 IA1_03010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612421.1 650176 D 1064551 CDS YP_008612422.1 549478604 complement(650823..651998) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair ATPase 651998 1064551000601 IA1_03015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA repair ATPase YP_008612422.1 650823 R 1064551 CDS YP_008612423.1 549478605 652324..653718 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid transporter 653718 1064551000602 IA1_03020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aromatic amino acid transporter YP_008612423.1 652324 D 1064551 CDS YP_008612424.1 549478606 complement(653760..655007) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; miniconductance mechanosensitive channel 655007 1064551000603 IA1_03025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 miniconductance mechanosensitive channel YP_008612424.1 653760 R 1064551 CDS YP_008612425.1 549478607 655318..657288 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lipase 657288 1064551000604 IA1_03030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipase YP_008612425.1 655318 D 1064551 CDS YP_008612426.1 549478608 complement(657555..658208) 1 NC_022525.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropteridine reductase 658208 1064551000605 IA1_03035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydropteridine reductase YP_008612426.1 657555 R 1064551 CDS YP_008612427.1 549478609 complement(658305..658673) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 658673 1064551000606 IA1_03040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612427.1 658305 R 1064551 CDS YP_008612428.1 549478610 complement(658673..659254) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator 659254 1064551000607 IA1_03045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 TetR family transcriptional regulator YP_008612428.1 658673 R 1064551 CDS YP_008612429.1 549478611 659543..659884 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 659884 1064551000608 IA1_03050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612429.1 659543 D 1064551 CDS YP_008612430.1 549478612 complement(659890..660138) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 660138 1064551000609 IA1_03055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612430.1 659890 R 1064551 CDS YP_008612431.1 549478613 complement(660205..661323) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyl:cysteine ligase 661323 1064551000610 IA1_03060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 gamma-glutamyl:cysteine ligase YP_008612431.1 660205 R 1064551 CDS YP_008612432.1 549478614 complement(661335..662039) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopantetheinyltransferase 662039 1064551000611 IA1_03065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphopantetheinyltransferase YP_008612432.1 661335 R 1064551 CDS YP_008612433.1 549478615 complement(662085..664340) 1 NC_022525.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane receptor FepA 664340 1064551000612 IA1_03070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane receptor FepA YP_008612433.1 662085 R 1064551 CDS YP_008612434.1 549478616 664529..665743 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; enterobactin/ferric enterobactin esterase 665743 1064551000613 IA1_03075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 enterobactin/ferric enterobactin esterase YP_008612434.1 664529 D 1064551 CDS YP_008612435.1 549478617 665774..665992 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 665992 1064551000614 IA1_03080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612435.1 665774 D 1064551 CDS YP_008612436.1 549478618 665989..669873 1 NC_022525.1 with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; enterobactin synthase subunit F 669873 entF 1064551000615 entF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 enterobactin synthase subunit F YP_008612436.1 665989 D 1064551 CDS YP_008612437.1 549478619 670123..671259 1 NC_022525.1 in Salmonella is responsible for long O-antigen polymerization; may be part of the ferric enterobactin transport system; necessary for enetrobactin uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 671259 1064551000616 IA1_03090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612437.1 670123 D 1064551 CDS YP_008612438.1 549478620 complement(671313..672107) 1 NC_022525.1 with FepBDE is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-enterobactin transporter ATP-binding protein 672107 1064551000617 IA1_03095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron-enterobactin transporter ATP-binding protein YP_008612438.1 671313 R 1064551 CDS YP_008612439.1 549478621 complement(672104..673093) 1 NC_022525.1 with FepBCD is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-enterobactin transporter permease 673093 1064551000618 IA1_03100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron-enterobactin transporter permease YP_008612439.1 672104 R 1064551 CDS YP_008612440.1 549478622 complement(673093..674100) 1 NC_022525.1 with FepBCG is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-enterobactin transporter membrane protein 674100 1064551000619 IA1_03105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron-enterobactin transporter membrane protein YP_008612440.1 673093 R 1064551 CDS YP_008612441.1 549481779 674211..675455 1 NC_022525.1 protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; enterobactin exporter EntS 675455 1064551000620 IA1_03110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 enterobactin exporter EntS YP_008612441.1 674211 D 1064551 CDS YP_008612442.1 549478623 complement(675518..676474) 1 NC_022525.1 with FepCDG is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; antibiotic ABC transporter substrate-binding protein 676474 1064551000621 IA1_03115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 antibiotic ABC transporter substrate-binding protein YP_008612442.1 675518 R 1064551 CDS YP_008612443.1 549478624 676783..677958 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; isochorismate synthase EntC 677958 1064551000622 IA1_03120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 isochorismate synthase EntC YP_008612443.1 676783 D 1064551 CDS YP_008612444.1 549478625 677968..679578 1 NC_022525.1 bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; Derived by automated computational analysis using gene prediction method: Protein Homology.; enterobactin synthase subunit E 679578 entE 1064551000623 entE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 enterobactin synthase subunit E YP_008612444.1 677968 D 1064551 CDS YP_008612445.1 549481780 679592..680449 1 NC_022525.1 2,3 dihydro-2,3 dihydroxybenzoate synthase; catalyzes the formation of 2,3 dihydro-2,3 dihydroxybenzoate and pyruvate from isochorismate; with Ent DEF is involved in enterobactin synthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; isochorismatase 680449 1064551000624 IA1_03130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 isochorismatase YP_008612445.1 679592 D 1064551 CDS YP_008612446.1 549481781 680449..681204 1 NC_022525.1 catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 2,3-dihydroxybenzoate-2,3-dehydrogenase 681204 1064551000625 IA1_03135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2,3-dihydroxybenzoate-2,3-dehydrogenase YP_008612446.1 680449 D 1064551 CDS YP_008612447.1 549478626 681207..681620 1 NC_022525.1 required for efficient enterobactin production; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase 681620 1064551000626 IA1_03140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyl-CoA esterase YP_008612447.1 681207 D 1064551 CDS YP_008612448.1 549478627 681802..683907 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon starvation protein A 683907 1064551000627 IA1_03145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbon starvation protein A YP_008612448.1 681802 D 1064551 CDS YP_008612449.1 549478628 683971..684168 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 684168 1064551000628 IA1_03150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612449.1 683971 D 1064551 CDS YP_008612450.1 549478629 complement(684204..685292) 1 NC_022525.1 member of the iron-containing alcohol dehydrogenase family; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 685292 1064551000629 IA1_03155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase YP_008612450.1 684204 R 1064551 CDS YP_008612451.1 549481782 685419..686579 1 NC_022525.1 catalyzes the transfer of an amino moiety; preference for methionine followed by histidine and phenylalanine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aminotransferase 686579 1064551000630 IA1_03160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aminotransferase YP_008612451.1 685419 D 1064551 CDS YP_008612452.1 549481783 complement(686580..687110) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; immunoglobulin-binding regulator 687110 1064551000631 IA1_03165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 immunoglobulin-binding regulator YP_008612452.1 686580 R 1064551 CDS YP_008612453.1 549481784 complement(687170..688405) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 688405 1064551000632 IA1_03170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612453.1 687170 R 1064551 CDS YP_008612454.1 549478630 complement(688571..689473) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 689473 1064551000633 IA1_03175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcripitonal regulator YP_008612454.1 688571 R 1064551 CDS YP_008612455.1 549478631 complement(689790..690536) 1 NC_022525.1 Involved in disulfide bond formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; disulfide isomerase 690536 dsbG 1064551000634 dsbG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 disulfide isomerase YP_008612455.1 689790 R 1064551 CDS YP_008612456.1 549481785 690977..691540 1 NC_022525.1 with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; alkyl hydroperoxide reductase subunit C 691540 1064551000635 IA1_03185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alkyl hydroperoxide reductase subunit C YP_008612456.1 690977 D 1064551 CDS YP_008612457.1 549478632 691782..693347 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alkyl hydroperoxide reductase subunit F 693347 1064551000636 IA1_03190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alkyl hydroperoxide reductase subunit F YP_008612457.1 691782 D 1064551 CDS YP_008612458.1 549478633 693680..694240 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dehydrogenase 694240 1064551000637 IA1_03195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dehydrogenase YP_008612458.1 693680 D 1064551 CDS YP_008612459.1 549478634 694233..696512 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DMSO reductase subunit A 696512 1064551000638 IA1_03200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DMSO reductase subunit A YP_008612459.1 694233 D 1064551 CDS YP_008612460.1 549478635 696509..697066 1 NC_022525.1 oxidoreductase, Fe-S subunit; terminal electron transfer protein for the reduction of DMSO; Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit B 697066 1064551000639 IA1_03205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dimethyl sulfoxide reductase subunit B YP_008612460.1 696509 D 1064551 CDS YP_008612461.1 549478636 697066..697833 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 697833 1064551000640 IA1_03210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase YP_008612461.1 697066 D 1064551 CDS YP_008612462.1 549481786 complement(697901..698329) 1 NC_022525.1 interacts with GroEL; is induced by starvation, heat shock and toxic agents; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; universal stress protein G 698329 1064551000641 IA1_03215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 universal stress protein G YP_008612462.1 697901 R 1064551 CDS YP_008612463.1 549478637 698552..699790 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase 699790 1064551000642 IA1_03220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alcohol dehydrogenase YP_008612463.1 698552 D 1064551 CDS YP_008612464.1 549478638 complement(699871..700281) 1 NC_022525.1 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside diphosphate kinase regulator 700281 1064551000643 IA1_03225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleoside diphosphate kinase regulator YP_008612464.1 699871 R 1064551 CDS YP_008612465.1 549478639 complement(700516..701322) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease I 701322 1064551000644 IA1_03230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonuclease I YP_008612465.1 700516 R 1064551 CDS YP_008612466.1 549478640 complement(701432..702895) 1 NC_022525.1 involved in the transport of citrate into the cell along with the export of succinate out of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter 702895 1064551000645 IA1_03240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 antiporter YP_008612466.1 701432 R 1064551 CDS YP_008612467.1 549478641 complement(702933..703829) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase 703829 1064551000646 IA1_03245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase YP_008612467.1 702933 R 1064551 CDS YP_008612468.1 549478642 complement(703801..704352) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase 704352 1064551000647 IA1_03250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase YP_008612468.1 703801 R 1064551 CDS YP_008612469.1 549478643 complement(704356..705885) 1 NC_022525.1 citrate-ACP transferase, the alpha subunit catalyzes the formation of (3S)-citryl-CoA from acetyl-CoA and citrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit alpha 705885 1064551000648 IA1_03255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 citrate lyase subunit alpha YP_008612469.1 704356 R 1064551 CDS YP_008612470.1 549478644 complement(705895..706803) 1 NC_022525.1 citryl-ACP lyase; catalyzes the formation of acetate and oxaloacetate from citrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit beta 706803 1064551000649 IA1_03260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 citrate lyase subunit beta YP_008612470.1 705895 R 1064551 CDS YP_008612471.1 549478645 complement(706800..707096) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit gamma 707096 1064551000650 IA1_03265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 citrate lyase subunit gamma YP_008612471.1 706800 R 1064551 CDS YP_008612472.1 549478646 complement(707093..708169) 1 NC_022525.1 activates citrate lyase by acetylation of the gamma subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; [citrate [pro-3S]-lyase] ligase 708169 1064551000651 IA1_03270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 [citrate [pro-3S]-lyase] ligase YP_008612472.1 707093 R 1064551 CDS YP_008612473.1 549478647 708554..710215 1 NC_022525.1 regulates the expression of citrate fermentation genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase DpiB 710215 dpiB 1064551000652 dpiB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensor histidine kinase DpiB YP_008612473.1 708554 D 1064551 CDS YP_008612474.1 549478648 710184..710864 1 NC_022525.1 regulates the expression of citrate fermentation genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; two-protein response regulator DpiA 710864 dpiA 1064551000653 dpiA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 two-protein response regulator DpiA YP_008612474.1 710184 D 1064551 CDS YP_008612475.1 549478649 complement(710918..712303) 1 NC_022525.1 responsible for the transport of C4-dicarboxylates during anaerobic growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter 712303 dcuC 1064551000654 dcuC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 C4-dicarboxylate ABC transporter YP_008612475.1 710918 R 1064551 CDS YP_008612476.1 549478650 712673..713254 1 NC_022525.1 catalyzes the transfer of palmitate to lipid A; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipid:lipid A palmitoyltransferase 713254 pagP 1064551000655 pagP Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phospholipid:lipid A palmitoyltransferase YP_008612476.1 712673 D 1064551 CDS YP_008612477.1 549478651 713442..713651 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA chaperone/anti-terminator 713651 1064551000656 IA1_03295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA chaperone/anti-terminator YP_008612477.1 713442 D 1064551 CDS YP_008612478.1 549481787 complement(713709..714023) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; camphor resistance protein CrcB 714023 1064551000657 IA1_03300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 camphor resistance protein CrcB YP_008612478.1 713709 R 1064551 CDS YP_008612479.1 549478652 714183..714971 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 714971 1064551000658 IA1_03305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrolase YP_008612479.1 714183 D 1064551 CDS YP_008612480.1 549478653 715100..715303 1 NC_022525.1 TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit TatE 715303 tatE 1064551000659 tatE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 preprotein translocase subunit TatE YP_008612480.1 715100 D 1064551 CDS YP_008612481.1 549478654 complement(715389..716354) 1 NC_022525.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoyl synthase 716354 1064551000660 IA1_03315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoyl synthase YP_008612481.1 715389 R 1064551 CDS YP_008612482.1 549478655 complement(716560..717513) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 717513 1064551000661 IA1_03320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612482.1 716560 R 1064551 CDS YP_008612483.1 549478656 complement(717815..718456) 1 NC_022525.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoate-protein ligase B 718456 1064551000662 IA1_03325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoate-protein ligase B YP_008612483.1 717815 R 1064551 CDS YP_008612484.1 549478657 complement(718556..718819) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 718819 1064551000663 IA1_03330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612484.1 718556 R 1064551 CDS YP_008612485.1 549478658 complement(718928..720139) 1 NC_022525.1 penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase 720139 1064551000664 IA1_03335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-alanyl-D-alanine carboxypeptidase YP_008612485.1 718928 R 1064551 CDS YP_008612486.1 549478659 complement(720279..721412) 1 NC_022525.1 septal ring protein, suppressor of prc, minor lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.; rare lipoprotein A 721412 1064551000665 IA1_03340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 rare lipoprotein A YP_008612486.1 720279 R 1064551 CDS YP_008612487.1 549478660 complement(721423..722535) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cell wall shape-determining protein 722535 1064551000666 IA1_03345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell wall shape-determining protein YP_008612487.1 721423 R 1064551 CDS YP_008612488.1 549478661 complement(722538..724439) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 2 724439 1064551000667 IA1_03350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 penicillin-binding protein 2 YP_008612488.1 722538 R 1064551 CDS YP_008612489.1 549478662 complement(724470..724937) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S rRNA methyltransferase 724937 1064551000668 IA1_03355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S rRNA methyltransferase YP_008612489.1 724470 R 1064551 CDS YP_008612490.1 549478663 complement(724941..725258) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-associated protein 725258 1064551000669 IA1_03360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribosome-associated protein YP_008612490.1 724941 R 1064551 CDS YP_008612491.1 549481788 complement(725447..725587) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ribosome-associated protein, iojap-like protein 725587 1064551000670 IA1_03365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribosome-associated protein, iojap-like protein YP_008612491.1 725447 R 1064551 CDS YP_008612492.1 549478664 complement(725587..726228) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ribazole phosphatase 726228 1064551000671 IA1_03370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alpha-ribazole phosphatase YP_008612492.1 725587 R 1064551 CDS YP_008612493.1 549478665 726292..727386 1 NC_022525.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine-phosphate decarboxylase 727386 1064551000672 IA1_03375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 threonine-phosphate decarboxylase YP_008612493.1 726292 D 1064551 CDS YP_008612494.1 549478666 complement(727361..728011) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinic acid mononucleotide adenylyltransferase 728011 1064551000673 IA1_03380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nicotinic acid mononucleotide adenylyltransferase YP_008612494.1 727361 R 1064551 CDS YP_008612495.1 549478667 complement(728004..729035) 1 NC_022525.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit delta 729035 holA 1064551000674 holA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA polymerase III subunit delta YP_008612495.1 728004 R 1064551 CDS YP_008612496.1 549478668 complement(729035..729625) 1 NC_022525.1 rare lipoprotein B; involved in the assembly of LPS in the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; LPS-assembly lipoprotein RlpB 729625 1064551000675 IA1_03390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LPS-assembly lipoprotein RlpB YP_008612496.1 729035 R 1064551 CDS YP_008612497.1 549478669 complement(729640..732222) 1 NC_022525.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucyl-tRNA synthetase 732222 leuS 1064551000676 leuS Salmonella enterica subsp. enterica serovar Thompson str. RM6836 leucyl-tRNA synthetase YP_008612497.1 729640 R 1064551 CDS YP_008612498.1 549481789 732510..732800 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; D-galactarate dehydratase 732800 1064551000677 IA1_03400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-galactarate dehydratase YP_008612498.1 732510 D 1064551 CDS YP_008612499.1 549481790 732763..733989 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; carbohydrate hydrolase 733989 1064551000678 IA1_03405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbohydrate hydrolase YP_008612499.1 732763 D 1064551 CDS YP_008612500.1 549478670 734039..734992 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxygluconate permease 734992 1064551000679 IA1_03410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-keto-3-deoxygluconate permease YP_008612500.1 734039 D 1064551 CDS YP_008612501.1 549478671 735060..736988 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-54 dependent transcriptional regulator 736988 1064551000680 IA1_03415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sigma-54 dependent transcriptional regulator YP_008612501.1 735060 D 1064551 CDS YP_008612502.1 549478672 737081..737554 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 737554 1064551000681 IA1_03420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612502.1 737081 D 1064551 CDS YP_008612503.1 549481791 complement(737593..738588) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 738588 1064551000682 IA1_03425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612503.1 737593 R 1064551 CDS YP_008612504.1 549481792 738806..739420 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 739420 1064551000683 IA1_03430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612504.1 738806 D 1064551 CDS YP_008612505.1 549481793 739417..740850 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; molecular chaperone 740850 1064551000684 IA1_03435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molecular chaperone YP_008612505.1 739417 D 1064551 CDS YP_008612506.1 549481794 740862..741557 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 741557 1064551000685 IA1_03440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612506.1 740862 D 1064551 CDS YP_008612507.1 549481795 741554..743017 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 743017 1064551000686 IA1_03445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612507.1 741554 D 1064551 CDS YP_008612508.1 549478673 complement(743039..744718) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone HscC 744718 1064551000687 IA1_03450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molecular chaperone HscC YP_008612508.1 743039 R 1064551 CDS YP_008612509.1 549478674 complement(744794..746032) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 746032 1064551000688 IA1_03455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612509.1 744794 R 1064551 CDS YP_008612510.1 549478675 complement(746064..746999) 1 NC_022525.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside hydrolase 746999 rihA 1064551000689 rihA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonucleoside hydrolase YP_008612510.1 746064 R 1064551 CDS YP_008612511.1 549478676 complement(747116..747841) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine ABC transporter ATP-binding protein 747841 1064551000690 IA1_03465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 histidine ABC transporter ATP-binding protein YP_008612511.1 747116 R 1064551 CDS YP_008612512.1 549478677 complement(747841..748515) 1 NC_022525.1 with GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate/aspartate transporter permease GltK 748515 1064551000691 IA1_03470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamate/aspartate transporter permease GltK YP_008612512.1 747841 R 1064551 CDS YP_008612513.1 549478678 complement(748515..749255) 1 NC_022525.1 with GltIKL is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate/aspartate ABC transporter permease GltJ 749255 1064551000692 IA1_03475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamate/aspartate ABC transporter permease GltJ YP_008612513.1 748515 R 1064551 CDS YP_008612514.1 549481796 complement(749415..750323) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; amino acid transporter 750323 1064551000693 IA1_03480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid transporter YP_008612514.1 749415 R 1064551 CDS YP_008612515.1 549481797 complement(750678..752216) 1 NC_022525.1 Transfers the fatty acyl group on membrane lipoproteins; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; apolipoprotein N-acyltransferase 752216 lnt 1064551000694 lnt Salmonella enterica subsp. enterica serovar Thompson str. RM6836 apolipoprotein N-acyltransferase YP_008612515.1 750678 R 1064551 CDS YP_008612516.1 549478679 complement(752241..753119) 1 NC_022525.1 involved in the transport of magnesium and cobalt ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt transporter 753119 1064551000695 IA1_03490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt transporter YP_008612516.1 752241 R 1064551 CDS YP_008612517.1 549478680 complement(753277..753750) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; metal-binding heat shock protein 753750 1064551000696 IA1_03495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 metal-binding heat shock protein YP_008612517.1 753277 R 1064551 CDS YP_008612518.1 549478681 complement(753747..754793) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate hydrolase 754793 1064551000697 IA1_03500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleoside triphosphate hydrolase YP_008612518.1 753747 R 1064551 CDS YP_008612519.1 549478682 complement(754998..756422) 1 NC_022525.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); Derived by automated computational analysis using gene prediction method: Protein Homology.; (dimethylallyl)adenosine tRNA methylthiotransferase 756422 1064551000698 IA1_03505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 (dimethylallyl)adenosine tRNA methylthiotransferase YP_008612519.1 754998 R 1064551 CDS YP_008612520.1 549478683 756566..757741 1 NC_022525.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 757741 ubiF 1064551000699 ubiF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_008612520.1 756566 D 1064551 CDS YP_008612521.1 549478684 complement(758410..760074) 1 NC_022525.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; asparagine synthetase B 760074 asnB 1064551000703 asnB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 asparagine synthetase B YP_008612521.1 758410 R 1064551 CDS YP_008612522.1 549478685 complement(760364..761116) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; UMP phosphatase 761116 1064551000704 IA1_03535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UMP phosphatase YP_008612522.1 760364 R 1064551 CDS YP_008612523.1 549478686 complement(761163..762383) 1 NC_022525.1 regulates the synthesis of glucosamine and N-acetylglucosamine by acting as a repressor of the nagEBACD operon and both a repressor and activator of the glmSU operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 762383 1064551000705 IA1_03540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612523.1 761163 R 1064551 CDS YP_008612524.1 549478687 complement(762388..763542) 1 NC_022525.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylglucosamine-6-phosphate deacetylase 763542 nagA 1064551000706 nagA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetylglucosamine-6-phosphate deacetylase YP_008612524.1 762388 R 1064551 CDS YP_008612525.1 549478688 complement(763602..764402) 1 NC_022525.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosamine-6-phosphate deaminase 764402 nagB 1064551000707 nagB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucosamine-6-phosphate deaminase YP_008612525.1 763602 R 1064551 CDS YP_008612526.1 549478689 764729..766681 1 NC_022525.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylglucosamine transporter subunit IIABC 766681 1064551000708 IA1_03555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS N-acetylglucosamine transporter subunit IIABC YP_008612526.1 764729 D 1064551 CDS YP_008612527.1 549478690 766892..768559 1 NC_022525.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaminyl-tRNA synthetase 768559 1064551000709 IA1_03560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutaminyl-tRNA synthetase YP_008612527.1 766892 D 1064551 CDS YP_008612528.1 549478691 769220..770626 1 NC_022525.1 outer membrane porin involved in the transport of chitooligosaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.; chitoporin 770626 chiP 1064551000710 chiP Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chitoporin YP_008612528.1 769220 D 1064551 CDS YP_008612529.1 549478692 770676..771008 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 771008 1064551000711 IA1_03570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612529.1 770676 D 1064551 CDS YP_008612530.1 549478693 complement(771057..772361) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate:proton symporter 772361 1064551000712 IA1_03575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 citrate:proton symporter YP_008612530.1 771057 R 1064551 CDS YP_008612531.1 549478694 complement(772412..773551) 1 NC_022525.1 with CitA (TcuA) catalyzes the oxidation of tricarballylate to cis-aconitate; originally thought to be involved in citrate utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; tricarballylate utilization protein B 773551 tcuB 1064551000713 tcuB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tricarballylate utilization protein B YP_008612531.1 772412 R 1064551 CDS YP_008612532.1 549478695 complement(773538..774941) 1 NC_022525.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; Derived by automated computational analysis using gene prediction method: Protein Homology.; tricarballylate dehydrogenase 774941 1064551000714 IA1_03585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tricarballylate dehydrogenase YP_008612532.1 773538 R 1064551 CDS YP_008612533.1 549478696 complement(775039..775965) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 775965 1064551000715 IA1_03590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcriptional regulator YP_008612533.1 775039 R 1064551 CDS YP_008612534.1 549478697 complement(776080..776532) 1 NC_022525.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferric uptake regulator 776532 fur 1064551000716 fur Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferric uptake regulator YP_008612534.1 776080 R 1064551 CDS YP_008612535.1 549478698 complement(776814..777344) 1 NC_022525.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavodoxin 777344 1064551000717 IA1_03600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flavodoxin YP_008612535.1 776814 R 1064551 CDS YP_008612536.1 549481798 complement(777495..777788) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LexA regulated protein 777788 1064551000718 IA1_03605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LexA regulated protein YP_008612536.1 777495 R 1064551 CDS YP_008612537.1 549478699 complement(777922..778692) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase 778692 1064551000719 IA1_03610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyl-CoA esterase YP_008612537.1 777922 R 1064551 CDS YP_008612538.1 549478700 778877..779419 1 NC_022525.1 negative modulator of the initiation of chromosome replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; replication initiation regulator SeqA 779419 1064551000720 IA1_03615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 replication initiation regulator SeqA YP_008612538.1 778877 D 1064551 CDS YP_008612539.1 549478701 779444..781084 1 NC_022525.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglucomutase 781084 1064551000721 IA1_03620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoglucomutase YP_008612539.1 779444 D 1064551 CDS YP_008612540.1 549478702 complement(781199..781684) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-nitroimidazole antibiotic resistance protein 781684 1064551000722 IA1_03625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5-nitroimidazole antibiotic resistance protein YP_008612540.1 781199 R 1064551 CDS YP_008612541.1 549478703 complement(781749..783068) 1 NC_022525.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine transporter 783068 potE 1064551000723 potE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 putrescine transporter YP_008612541.1 781749 R 1064551 CDS YP_008612542.1 549478704 complement(783065..785263) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine decarboxylase 785263 1064551000724 IA1_03635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ornithine decarboxylase YP_008612542.1 783065 R 1064551 CDS YP_008612543.1 549481799 785661..785774 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 785774 1064551000725 IA1_03640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612543.1 785661 D 1064551 CDS YP_008612544.1 549478705 complement(786025..786702) 1 NC_022525.1 response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 786702 1064551000726 IA1_03645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612544.1 786025 R 1064551 CDS YP_008612545.1 549478706 complement(786699..789383) 1 NC_022525.1 sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein KdpD 789383 1064551000727 IA1_03650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensor protein KdpD YP_008612545.1 786699 R 1064551 CDS YP_008612546.1 549478707 complement(789380..789967) 1 NC_022525.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium-transporting ATPase subunit C 789967 1064551000728 IA1_03655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 potassium-transporting ATPase subunit C YP_008612546.1 789380 R 1064551 CDS YP_008612547.1 549478708 complement(789973..792021) 1 NC_022525.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium-transporting ATPase subunit B 792021 1064551000729 IA1_03660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 potassium-transporting ATPase subunit B YP_008612547.1 789973 R 1064551 CDS YP_008612548.1 549478709 complement(792042..793721) 1 NC_022525.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium-transporting ATPase subunit A 793721 1064551000730 IA1_03665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 potassium-transporting ATPase subunit A YP_008612548.1 792042 R 1064551 CDS YP_008612549.1 549481800 complement(793721..793810) 1 NC_022525.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; potassium transporter TrkA 793810 kdpF 1064551000731 kdpF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 potassium transporter TrkA YP_008612549.1 793721 R 1064551 CDS YP_008612550.1 549478710 794147..794353 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 794353 1064551000732 IA1_03675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612550.1 794147 D 1064551 CDS YP_008612551.1 549478711 794464..795885 1 NC_022525.1 UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyribodipyrimidine photolyase 795885 1064551000733 IA1_03680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 deoxyribodipyrimidine photolyase YP_008612551.1 794464 D 1064551 CDS YP_008612552.1 549478712 complement(795924..797405) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 797405 1064551000734 IA1_03685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter permease YP_008612552.1 795924 R 1064551 CDS YP_008612553.1 549481801 797734..798477 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; metal-binding protein 798477 1064551000735 IA1_03690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 metal-binding protein YP_008612553.1 797734 D 1064551 CDS YP_008612554.1 549478713 798493..799149 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 799149 1064551000736 IA1_03695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612554.1 798493 D 1064551 CDS YP_008612555.1 549478714 799143..800075 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 800075 1064551000737 IA1_03700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612555.1 799143 D 1064551 CDS YP_008612556.1 549478715 800065..800799 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LamB/YcsF family protein 800799 1064551000738 IA1_03705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LamB/YcsF family protein YP_008612556.1 800065 D 1064551 CDS YP_008612557.1 549478716 800921..801712 1 NC_022525.1 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; endoribonuclease SymE 801712 1064551000739 IA1_03710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endoribonuclease SymE YP_008612557.1 800921 D 1064551 CDS YP_008612558.1 549478717 complement(801767..802813) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; AbrB family transcriptional regulator 802813 1064551000740 IA1_03715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 AbrB family transcriptional regulator YP_008612558.1 801767 R 1064551 CDS YP_008612559.1 549478718 complement(802949..804232) 1 NC_022525.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; type II citrate synthase 804232 gltA 1064551000741 gltA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type II citrate synthase YP_008612559.1 802949 R 1064551 CDS YP_008612560.1 549481802 804972..805376 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; succinate dehydrogenase cytochrome b556 large membrane subunit 805376 sdhC 1064551000742 sdhC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 succinate dehydrogenase cytochrome b556 large membrane subunit YP_008612560.1 804972 D 1064551 CDS YP_008612561.1 549478719 805370..805717 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase cytochrome b556 small membrane subunit 805717 sdhD 1064551000743 sdhD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 succinate dehydrogenase cytochrome b556 small membrane subunit YP_008612561.1 805370 D 1064551 CDS YP_008612562.1 549478720 805717..807483 1 NC_022525.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase flavoprotein subunit 807483 sdhA 1064551000744 sdhA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 succinate dehydrogenase flavoprotein subunit YP_008612562.1 805717 D 1064551 CDS YP_008612563.1 549478721 807497..808216 1 NC_022525.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase iron-sulfur subunit 808216 sdhB 1064551000745 sdhB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 succinate dehydrogenase iron-sulfur subunit YP_008612563.1 807497 D 1064551 CDS YP_008612564.1 549478722 808740..811541 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxoglutarate dehydrogenase E1 811541 1064551000746 IA1_03745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-oxoglutarate dehydrogenase E1 YP_008612564.1 808740 D 1064551 CDS YP_008612565.1 549478723 811556..812764 1 NC_022525.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoamide succinyltransferase 812764 1064551000747 IA1_03750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydrolipoamide succinyltransferase YP_008612565.1 811556 D 1064551 CDS YP_008612566.1 549478724 812906..814072 1 NC_022525.1 catalyzes the interconversion of succinyl-CoA and succinate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate--CoA ligase subunit beta 814072 sucC 1064551000748 sucC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 malate--CoA ligase subunit beta YP_008612566.1 812906 D 1064551 CDS YP_008612567.1 549478725 814072..814941 1 NC_022525.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyl-CoA synthetase subunit alpha 814941 1064551000749 IA1_03760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 succinyl-CoA synthetase subunit alpha YP_008612567.1 814072 D 1064551 CDS YP_008612568.1 549481803 complement(816317..816397) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 816397 1064551000750 IA1_03765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612568.1 816317 R 1064551 CDS YP_008612569.1 549478726 816524..818092 1 NC_022525.1 part of the aerobic respiratory chain; catalyzes the ubiquinol to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit I 818092 1064551000751 IA1_03770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome BD oxidase subunit I YP_008612569.1 816524 D 1064551 CDS YP_008612570.1 549478727 818108..819247 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit II 819247 1064551000752 IA1_03775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome BD oxidase subunit II YP_008612570.1 818108 D 1064551 CDS YP_008612571.1 549478728 819262..819375 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 819375 1064551000753 IA1_03780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612571.1 819262 D 1064551 CDS YP_008612572.1 549481804 819375..819668 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 819668 1064551000754 IA1_03785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612572.1 819375 D 1064551 CDS YP_008612573.1 549481805 819897..820301 1 NC_022525.1 catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acyl-CoA thioesterase 820301 1064551000755 IA1_03790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyl-CoA thioesterase YP_008612573.1 819897 D 1064551 CDS YP_008612574.1 549478729 820298..820990 1 NC_022525.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; Derived by automated computational analysis using gene prediction method: Protein Homology.; colicin transporter 820990 1064551000756 IA1_03795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 colicin transporter YP_008612574.1 820298 D 1064551 CDS YP_008612575.1 549478730 820994..821422 1 NC_022525.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; Derived by automated computational analysis using gene prediction method: Protein Homology.; colicin transporter 821422 1064551000757 IA1_03800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 colicin transporter YP_008612575.1 820994 D 1064551 CDS YP_008612576.1 549481806 821487..822665 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein TolA 822665 1064551000758 IA1_03805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein TolA YP_008612576.1 821487 D 1064551 CDS YP_008612577.1 549478731 822786..824081 1 NC_022525.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.; translocation protein TolB 824081 tolB 1064551000759 tolB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 translocation protein TolB YP_008612577.1 822786 D 1064551 CDS YP_008612578.1 549478732 824116..824640 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidoglycan-associated outer membrane lipoprotein 824640 1064551000760 IA1_03815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidoglycan-associated outer membrane lipoprotein YP_008612578.1 824116 D 1064551 CDS YP_008612579.1 549478733 824650..825438 1 NC_022525.1 periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; Derived by automated computational analysis using gene prediction method: Protein Homology.; tol-pal system protein YbgF 825438 1064551000761 IA1_03820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tol-pal system protein YbgF YP_008612579.1 824650 D 1064551 CDS YP_008612580.1 549478734 827151..828194 1 NC_022525.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; quinolinate synthetase 828194 1064551000767 IA1_03850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 quinolinate synthetase YP_008612580.1 827151 D 1064551 CDS YP_008612581.1 549478735 828219..828938 1 NC_022525.1 involved in nicotinamide riboside transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinamide riboside transporter PnuC 828938 1064551000768 IA1_03855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nicotinamide riboside transporter PnuC YP_008612581.1 828219 D 1064551 CDS YP_008612582.1 549478736 complement(828935..829873) 1 NC_022525.1 involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter ZitB 829873 1064551000769 IA1_03860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 zinc transporter ZitB YP_008612582.1 828935 R 1064551 CDS YP_008612583.1 549478737 complement(829984..830370) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 830370 1064551000770 IA1_03865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612583.1 829984 R 1064551 CDS YP_008612584.1 549478738 830690..831742 1 NC_022525.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-2-dehydro-3-deoxyheptonate aldolase 831742 1064551000771 IA1_03870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phospho-2-dehydro-3-deoxyheptonate aldolase YP_008612584.1 830690 D 1064551 CDS YP_008612585.1 549478739 complement(831836..832381) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase 832381 1064551000772 IA1_03875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fumarate hydratase YP_008612585.1 831836 R 1064551 CDS YP_008612586.1 549478740 complement(832396..833241) 1 NC_022525.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase 833241 1064551000773 IA1_03880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fumarate hydratase YP_008612586.1 832396 R 1064551 CDS YP_008612587.1 549478741 833371..834261 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 834261 1064551000774 IA1_03885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612587.1 833371 D 1064551 CDS YP_008612588.1 549478742 complement(834262..835245) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 835245 1064551000775 IA1_03890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcriptional regulator YP_008612588.1 834262 R 1064551 CDS YP_008612589.1 549478743 835468..836736 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transporter 836736 1064551000776 IA1_03895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cation transporter YP_008612589.1 835468 D 1064551 CDS YP_008612590.1 549478744 836786..837031 1 NC_022525.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase subunit gamma 837031 1064551000777 IA1_03900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxaloacetate decarboxylase subunit gamma YP_008612590.1 836786 D 1064551 CDS YP_008612591.1 549478745 837047..838816 1 NC_022525.1 catalyzes the formation of pyruvate from oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase 838816 1064551000778 IA1_03905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxaloacetate decarboxylase YP_008612591.1 837047 D 1064551 CDS YP_008612592.1 549478746 838829..840130 1 NC_022525.1 catalyzes the formation of pyruvate from oxaloacetate; sodium translocating; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase subunit beta 840130 1064551000779 IA1_03910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxaloacetate decarboxylase subunit beta YP_008612592.1 838829 D 1064551 CDS YP_008612593.1 549478747 840249..840947 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 840947 1064551000780 IA1_03915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612593.1 840249 D 1064551 CDS YP_008612594.1 549478748 841327..842406 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; iron ABC transporter permease 842406 1064551000781 IA1_03920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron ABC transporter permease YP_008612594.1 841327 D 1064551 CDS YP_008612595.1 549481807 842406..843182 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; iron ABC transporter ATP-binding protein 843182 1064551000782 IA1_03925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron ABC transporter ATP-binding protein YP_008612595.1 842406 D 1064551 CDS YP_008612596.1 549478749 complement(843273..844025) 1 NC_022525.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglyceromutase 844025 gpmA 1064551000783 gpmA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoglyceromutase YP_008612596.1 843273 R 1064551 CDS YP_008612597.1 549478750 complement(844249..845289) 1 NC_022525.1 mutarotase; catalyzes the conversion of beta-galactose to the alpha-anomer; links the metabolism of lactose and galactose; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactose-1-epimerase 845289 galM 1064551000784 galM Salmonella enterica subsp. enterica serovar Thompson str. RM6836 galactose-1-epimerase YP_008612597.1 844249 R 1064551 CDS YP_008612598.1 549478751 complement(845283..846431) 1 NC_022525.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactokinase 846431 1064551000785 IA1_03940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 galactokinase YP_008612598.1 845283 R 1064551 CDS YP_008612599.1 549478752 complement(846434..847480) 1 NC_022525.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactose-1-phosphate uridylyltransferase 847480 1064551000786 IA1_03945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 galactose-1-phosphate uridylyltransferase YP_008612599.1 846434 R 1064551 CDS YP_008612600.1 549478753 complement(847491..848507) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-galactose-4-epimerase 848507 1064551000787 IA1_03950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-galactose-4-epimerase YP_008612600.1 847491 R 1064551 CDS YP_008612601.1 549481808 complement(848730..849638) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 849638 1064551000788 IA1_03955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612601.1 848730 R 1064551 CDS YP_008612602.1 549478754 complement(849809..851284) 1 NC_022525.1 contains 2 ATP-binding cassettes; involved in the transport of molybdenum; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum ABC transporter ATP-binding protein 851284 1064551000789 IA1_03960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdenum ABC transporter ATP-binding protein YP_008612602.1 849809 R 1064551 CDS YP_008612603.1 549478755 complement(851352..852140) 1 NC_022525.1 represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 852140 1064551000790 IA1_03965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612603.1 851352 R 1064551 CDS YP_008612604.1 549481809 852269..852418 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 852418 1064551000791 IA1_03970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612604.1 852269 D 1064551 CDS YP_008612605.1 549478756 852586..853359 1 NC_022525.1 with ModCB is involved in the high-affinity transport of molybdate; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum ABC transporter substrate-binding protein 853359 modA 1064551000792 modA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdenum ABC transporter substrate-binding protein YP_008612605.1 852586 D 1064551 CDS YP_008612606.1 549478757 853359..854048 1 NC_022525.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdate ABC transporter permease 854048 modB 1064551000793 modB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdate ABC transporter permease YP_008612606.1 853359 D 1064551 CDS YP_008612607.1 549478758 854051..855109 1 NC_022525.1 Part of the ABC transporter complex modABC involved in molybdenum import; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdate ABC transporter ATP-binding protein 855109 modC 1064551000794 modC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdate ABC transporter ATP-binding protein YP_008612607.1 854051 D 1064551 CDS YP_008612608.1 549478759 complement(855110..855970) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxal phosphate phosphatase 855970 1064551000795 IA1_03990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyridoxal phosphate phosphatase YP_008612608.1 855110 R 1064551 CDS YP_008612609.1 549478760 856092..857087 1 NC_022525.1 catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphogluconolactonase 857087 1064551000796 IA1_03995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 6-phosphogluconolactonase YP_008612609.1 856092 D 1064551 CDS YP_008612610.1 549478761 complement(857225..858508) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA thioesterase 858508 1064551000797 IA1_04000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyl-CoA thioesterase YP_008612610.1 857225 R 1064551 CDS YP_008612611.1 549478762 858746..859969 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazolonepropionase 859969 1064551000798 IA1_04005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 imidazolonepropionase YP_008612611.1 858746 D 1064551 CDS YP_008612612.1 549478763 859966..860907 1 NC_022525.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; formimidoylglutamase 860907 1064551000799 IA1_04010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formimidoylglutamase YP_008612612.1 859966 D 1064551 CDS YP_008612613.1 549478764 860952..861677 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine utilization repressor 861677 1064551000800 IA1_04015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 histidine utilization repressor YP_008612613.1 860952 D 1064551 CDS YP_008612614.1 549481810 861873..863558 1 NC_022525.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; urocanate hydratase 863558 1064551000801 IA1_04020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 urocanate hydratase YP_008612614.1 861873 D 1064551 CDS YP_008612615.1 549478765 863560..865080 1 NC_022525.1 catalyzes the degradation of histidine to urocanate and ammmonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine ammonia-lyase 865080 1064551000802 IA1_04025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 histidine ammonia-lyase YP_008612615.1 863560 D 1064551 CDS YP_008612616.1 549478766 complement(865165..865641) 1 NC_022525.1 YbhB; similar to rat and human kinase inhibitory proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; kinase inhibitor protein 865641 1064551000803 IA1_04030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 kinase inhibitor protein YP_008612616.1 865165 R 1064551 CDS YP_008612617.1 549478767 complement(865699..866988) 1 NC_022525.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosylmethionine--8-amino-7-oxononanoate aminotransferase 866988 1064551000804 IA1_04035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adenosylmethionine--8-amino-7-oxononanoate aminotransferase YP_008612617.1 865699 R 1064551 CDS YP_008612618.1 549478768 867075..868115 1 NC_022525.1 catalyzes the formation of biotin from dethiobiotin; Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin synthase 868115 1064551000805 IA1_04040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 biotin synthase YP_008612618.1 867075 D 1064551 CDS YP_008612619.1 549478769 868112..869269 1 NC_022525.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 8-amino-7-oxononanoate synthase 869269 1064551000806 IA1_04045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 8-amino-7-oxononanoate synthase YP_008612619.1 868112 D 1064551 CDS YP_008612620.1 549478770 869253..870008 1 NC_022525.1 methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin biosynthesis protein BioC 870008 1064551000807 IA1_04050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 biotin biosynthesis protein BioC YP_008612620.1 869253 D 1064551 CDS YP_008612621.1 549478771 870001..870687 1 NC_022525.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; Derived by automated computational analysis using gene prediction method: Protein Homology.; dithiobiotin synthetase 870687 bioD 1064551000808 bioD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dithiobiotin synthetase YP_008612621.1 870001 D 1064551 CDS YP_008612622.1 549478772 871338..873359 1 NC_022525.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit B 873359 1064551000809 IA1_04060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 excinuclease ABC subunit B YP_008612622.1 871338 D 1064551 CDS YP_008612623.1 549481811 873850..876114 1 NC_022525.1 secreted by salmonella pathogenicity islands 1 and 2; involved in survival of Salmonella in host cells; interferes with host cell ubiquination pathway; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; E3 ubiquitin-protein ligase SlrP 876114 1064551000810 IA1_04065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 E3 ubiquitin-protein ligase SlrP YP_008612623.1 873850 D 1064551 CDS YP_008612624.1 549481812 complement(876209..877117) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 877117 1064551000811 IA1_04070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612624.1 876209 R 1064551 CDS YP_008612625.1 549478773 877514..878503 1 NC_022525.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum cofactor biosynthesis protein A 878503 moaA 1064551000812 moaA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdenum cofactor biosynthesis protein A YP_008612625.1 877514 D 1064551 CDS YP_008612626.1 549478774 878525..879037 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin biosynthesis protein B 879037 1064551000813 IA1_04080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdopterin biosynthesis protein B YP_008612626.1 878525 D 1064551 CDS YP_008612627.1 549478775 879040..879525 1 NC_022525.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum cofactor biosynthesis protein MoaC 879525 moaC 1064551000814 moaC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdenum cofactor biosynthesis protein MoaC YP_008612627.1 879040 D 1064551 CDS YP_008612628.1 549478776 879518..879763 1 NC_022525.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin synthase small subunit 879763 moaD 1064551000815 moaD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdopterin synthase small subunit YP_008612628.1 879518 D 1064551 CDS YP_008612629.1 549478777 879765..880217 1 NC_022525.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin guanine dinucleotide biosynthesis protein MoaE 880217 moaE 1064551000816 moaE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdopterin guanine dinucleotide biosynthesis protein MoaE YP_008612629.1 879765 D 1064551 CDS YP_008612630.1 549478778 880265..880969 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 880969 1064551000817 IA1_04100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612630.1 880265 D 1064551 CDS YP_008612631.1 549478779 881116..881823 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 881823 1064551000818 IA1_04105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612631.1 881116 D 1064551 CDS YP_008612632.1 549481813 881856..882455 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 882455 1064551000819 IA1_04110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612632.1 881856 D 1064551 CDS YP_008612633.1 549481814 882463..883023 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 883023 1064551000820 IA1_04115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612633.1 882463 D 1064551 CDS YP_008612634.1 549478780 complement(883026..883988) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 883988 1064551000821 IA1_04120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612634.1 883026 R 1064551 CDS YP_008612635.1 549478781 complement(883988..885229) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cardiolipin synthase 2 885229 1064551000822 IA1_04125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cardiolipin synthase 2 YP_008612635.1 883988 R 1064551 CDS YP_008612636.1 549478782 complement(885226..885984) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 885984 1064551000823 IA1_04130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612636.1 885226 R 1064551 CDS YP_008612637.1 549478783 886117..886527 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 886527 1064551000824 IA1_04135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612637.1 886117 D 1064551 CDS YP_008612638.1 549478784 complement(886489..887595) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 887595 1064551000825 IA1_04140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612638.1 886489 R 1064551 CDS YP_008612639.1 549478785 complement(887711..888841) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 888841 1064551000826 IA1_04145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612639.1 887711 R 1064551 CDS YP_008612640.1 549478786 complement(888834..890570) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein 890570 1064551000827 IA1_04150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug ABC transporter ATP-binding protein YP_008612640.1 888834 R 1064551 CDS YP_008612641.1 549478787 complement(890563..891558) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 891558 1064551000828 IA1_04155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008612641.1 890563 R 1064551 CDS YP_008612642.1 549478788 complement(891558..892232) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 892232 1064551000829 IA1_04160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612642.1 891558 R 1064551 CDS YP_008612643.1 549478789 892462..893823 1 NC_022525.1 this helicase is not essential cell growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 893823 1064551000830 IA1_04165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA helicase YP_008612643.1 892462 D 1064551 CDS YP_008612644.1 549478790 894031..896175 1 NC_022525.1 helicase involved in DNA repair and perhaps also replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase DinG 896175 dinG 1064551000831 dinG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-dependent DNA helicase DinG YP_008612644.1 894031 D 1064551 CDS YP_008612645.1 549478791 896205..897179 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase 897179 1064551000832 IA1_04175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycosyl transferase YP_008612645.1 896205 D 1064551 CDS YP_008612646.1 549478792 complement(897335..897595) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 897595 1064551000833 IA1_04180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612646.1 897335 R 1064551 CDS YP_008612647.1 549478793 complement(897880..898146) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 898146 1064551000834 IA1_04185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612647.1 897880 R 1064551 CDS YP_008612648.1 549478794 898351..899277 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 899277 1064551000835 IA1_04190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 23S rRNA methyltransferase YP_008612648.1 898351 D 1064551 CDS YP_008612649.1 549478795 complement(899274..901496) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive channel protein 901496 1064551000836 IA1_04195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 mechanosensitive channel protein YP_008612649.1 899274 R 1064551 CDS YP_008612650.1 549481815 901495..901632 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 901632 1064551000837 IA1_04200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612650.1 901495 D 1064551 CDS YP_008612651.1 549478796 complement(901615..902337) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine ABC transporter ATP-binding protein 902337 1064551000838 IA1_04205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 histidine ABC transporter ATP-binding protein YP_008612651.1 901615 R 1064551 CDS YP_008612652.1 549478797 complement(902334..902993) 1 NC_022525.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine ABC transporter permease 902993 glnP 1064551000839 glnP Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamine ABC transporter permease YP_008612652.1 902334 R 1064551 CDS YP_008612653.1 549478798 complement(903137..903883) 1 NC_022525.1 similar to periplasmic-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein 903883 glnH 1064551000840 glnH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid ABC transporter substrate-binding protein YP_008612653.1 903137 R 1064551 CDS YP_008612654.1 549481816 complement(903880..903966) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 903966 1064551000841 IA1_04220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612654.1 903880 R 1064551 CDS YP_008612655.1 549478799 complement(904360..904863) 1 NC_022525.1 binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA starvation/stationary phase protection protein Dps 904863 1064551000842 IA1_04225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA starvation/stationary phase protection protein Dps YP_008612655.1 904360 R 1064551 CDS YP_008612656.1 549478800 complement(905166..906053) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine transporter RhtB 906053 1064551000843 IA1_04230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 threonine transporter RhtB YP_008612656.1 905166 R 1064551 CDS YP_008612657.1 549478801 906407..906922 1 NC_022525.1 OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein X 906922 ompX 1064551000844 ompX Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane protein X YP_008612657.1 906407 D 1064551 CDS YP_008612658.1 549481817 complement(906985..908565) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphoethanolamine transferase 908565 1064551000845 IA1_04240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoethanolamine transferase YP_008612658.1 906985 R 1064551 CDS YP_008612659.1 549481818 908731..908901 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 908901 1064551000846 IA1_04245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612659.1 908731 D 1064551 CDS YP_008612660.1 549478802 909144..909617 1 NC_022525.1 Transcriptional regulator that represses the manganese transporter MntH when manganese is present; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 909617 1064551000847 IA1_04250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612660.1 909144 D 1064551 CDS YP_008612661.1 549478803 909614..910726 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 910726 1064551000848 IA1_04255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612661.1 909614 D 1064551 CDS YP_008612662.1 549478804 complement(910770..911690) 1 NC_022525.1 catalyzes th removal of D-alanine and attachment of the murein lipoprotein to the peptidoglycan tetrapeptide chain; Derived by automated computational analysis using gene prediction method: Protein Homology.; L,D-transpeptidase 911690 1064551000849 IA1_04260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L,D-transpeptidase YP_008612662.1 910770 R 1064551 CDS YP_008612663.1 549478805 911909..913501 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter ATP-binding protein 913501 1064551000850 IA1_04265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heme ABC transporter ATP-binding protein YP_008612663.1 911909 D 1064551 CDS YP_008612664.1 549478806 913957..914853 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 914853 1064551000851 IA1_04270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612664.1 913957 D 1064551 CDS YP_008612665.1 549478807 complement(914882..915415) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar phosphatase 915415 1064551000852 IA1_04275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar phosphatase YP_008612665.1 914882 R 1064551 CDS YP_008612666.1 549478808 complement(915809..917074) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 917074 1064551000853 IA1_04280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612666.1 915809 R 1064551 CDS YP_008612667.1 549478809 917336..918145 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar phosphatase 918145 1064551000854 IA1_04285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar phosphatase YP_008612667.1 917336 D 1064551 CDS YP_008612668.1 549478810 complement(918223..920655) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; formate acetyltransferase 920655 1064551000855 IA1_04290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate acetyltransferase YP_008612668.1 918223 R 1064551 CDS YP_008612669.1 549478811 complement(920661..921560) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate formate-lyase 3-activating protein 921560 1064551000856 IA1_04295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyruvate formate-lyase 3-activating protein YP_008612669.1 920661 R 1064551 CDS YP_008612670.1 549478812 complement(921838..922587) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin-synthase adenylyltransferase 922587 1064551000857 IA1_04300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdopterin-synthase adenylyltransferase YP_008612670.1 921838 R 1064551 CDS YP_008612671.1 549478813 complement(922587..923822) 1 NC_022525.1 is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin biosynthesis protein MoeA 923822 1064551000858 IA1_04305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdopterin biosynthesis protein MoeA YP_008612671.1 922587 R 1064551 CDS YP_008612672.1 549478814 924025..924966 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; isoaspartyl peptidase 924966 1064551000859 IA1_04310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 isoaspartyl peptidase YP_008612672.1 924025 D 1064551 CDS YP_008612673.1 549478815 924977..926848 1 NC_022525.1 with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein 926848 1064551000860 IA1_04315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathione ABC transporter ATP-binding protein YP_008612673.1 924977 D 1064551 CDS YP_008612674.1 549481819 926881..928419 1 NC_022525.1 with GsiACD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glutathione ABC transporter substrate-binding protein GsiB 928419 1064551000861 IA1_04320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathione ABC transporter substrate-binding protein GsiB YP_008612674.1 926881 D 1064551 CDS YP_008612675.1 549478816 928480..929400 1 NC_022525.1 with GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter permease 929400 1064551000862 IA1_04325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathione ABC transporter permease YP_008612675.1 928480 D 1064551 CDS YP_008612676.1 549478817 929403..930314 1 NC_022525.1 with GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter permease GsiD 930314 1064551000863 IA1_04330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathione ABC transporter permease GsiD YP_008612676.1 929403 D 1064551 CDS YP_008612677.1 549478818 complement(930405..931730) 1 NC_022525.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal protein S12 methylthiotransferase 931730 rimO 1064551000864 rimO Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribosomal protein S12 methylthiotransferase YP_008612677.1 930405 R 1064551 CDS YP_008612678.1 549478819 931961..932344 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm formation regulatory protein BssR 932344 1064551000865 IA1_04340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 biofilm formation regulatory protein BssR YP_008612678.1 931961 D 1064551 CDS YP_008612679.1 549481820 933057..933572 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 933572 1064551000866 IA1_04345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612679.1 933057 D 1064551 CDS YP_008612680.1 549481821 933595..934344 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; electron transfer flavoprotein subunit beta 934344 1064551000867 IA1_04350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 electron transfer flavoprotein subunit beta YP_008612680.1 933595 D 1064551 CDS YP_008612681.1 549478820 934355..935308 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein subunit beta 935308 1064551000868 IA1_04355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 electron transfer flavoprotein subunit beta YP_008612681.1 934355 D 1064551 CDS YP_008612682.1 549481822 935341..935604 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acyl dehydratase 935604 1064551000869 IA1_04360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyl dehydratase YP_008612682.1 935341 D 1064551 CDS YP_008612683.1 549478821 935601..936764 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase 936764 1064551000870 IA1_04365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyl-CoA dehydrogenase YP_008612683.1 935601 D 1064551 CDS YP_008612684.1 549481823 937213..938898 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dehydrogenase 938898 1064551000871 IA1_04370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dehydrogenase YP_008612684.1 937213 D 1064551 CDS YP_008612685.1 549478822 complement(938904..939794) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 939794 1064551000872 IA1_04375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcriptional regulator YP_008612685.1 938904 R 1064551 CDS YP_008612686.1 549481824 complement(940059..940484) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 940484 1064551000873 IA1_04380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612686.1 940059 R 1064551 CDS YP_008612687.1 549481825 940831..941301 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glucose dehydrogenase 941301 1064551000874 IA1_04385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucose dehydrogenase YP_008612687.1 940831 D 1064551 CDS YP_008612688.1 549481826 941350..941511 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 941511 1064551000875 IA1_04390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612688.1 941350 D 1064551 CDS YP_008612689.1 549478823 complement(941508..942134) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase 942134 1064551000876 IA1_04395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathione S-transferase YP_008612689.1 941508 R 1064551 CDS YP_008612690.1 549478824 942378..943580 1 NC_022525.1 penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase 943580 1064551000877 IA1_04400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-alanyl-D-alanine carboxypeptidase YP_008612690.1 942378 D 1064551 CDS YP_008612691.1 549478825 complement(943626..944384) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 944384 1064551000878 IA1_04405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612691.1 943626 R 1064551 CDS YP_008612692.1 549481827 complement(944456..945130) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; UDP pyrophosphate phosphatase 945130 1064551000879 IA1_04410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP pyrophosphate phosphatase YP_008612692.1 944456 R 1064551 CDS YP_008612693.1 549478826 945377..946609 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 946609 1064551000880 IA1_04415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008612693.1 945377 D 1064551 CDS YP_008612694.1 549478827 complement(946663..947478) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar phosphatase SupH 947478 1064551000881 IA1_04420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar phosphatase SupH YP_008612694.1 946663 R 1064551 CDS YP_008612695.1 549478828 complement(947475..948686) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 948686 1064551000882 IA1_04425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612695.1 947475 R 1064551 CDS YP_008612696.1 549478829 948854..949474 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 949474 1064551000883 IA1_04430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DeoR family transcriptional regulator YP_008612696.1 948854 D 1064551 CDS YP_008612697.1 549478830 complement(949591..951276) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 951276 1064551000884 IA1_04435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008612697.1 949591 R 1064551 CDS YP_008612698.1 549478831 951547..951924 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 951924 1064551000885 IA1_04440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612698.1 951547 D 1064551 CDS YP_008612699.1 549478832 complement(951956..952219) 1 NC_022525.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin 952219 grxA 1064551000886 grxA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutaredoxin YP_008612699.1 951956 R 1064551 CDS YP_008612700.1 549481828 952389..952679 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 952679 1064551000887 IA1_04450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612700.1 952389 D 1064551 CDS YP_008612701.1 549481829 952663..953385 1 NC_022525.1 NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; nitroreductase A 953385 1064551000888 IA1_04455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitroreductase A YP_008612701.1 952663 D 1064551 CDS YP_008612702.1 549478833 953443..954345 1 NC_022525.1 responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal protein S6 modification protein 954345 1064551000889 IA1_04460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribosomal protein S6 modification protein YP_008612702.1 953443 D 1064551 CDS YP_008612703.1 549478834 954442..954918 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 954918 1064551000890 IA1_04465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612703.1 954442 D 1064551 CDS YP_008612704.1 549478835 955267..956379 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter substrate-binding protein 956379 1064551000891 IA1_04470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 putrescine/spermidine ABC transporter substrate-binding protein YP_008612704.1 955267 D 1064551 CDS YP_008612705.1 549478836 956467..957600 1 NC_022525.1 part of the PotFGHI ATP-dependent putrescine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter ATP-binding protein 957600 potG 1064551000892 potG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 putrescine/spermidine ABC transporter ATP-binding protein YP_008612705.1 956467 D 1064551 CDS YP_008612706.1 549478837 957610..958563 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease 958563 1064551000893 IA1_04480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 putrescine/spermidine ABC transporter permease YP_008612706.1 957610 D 1064551 CDS YP_008612707.1 549478838 958560..959405 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease 959405 1064551000894 IA1_04485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 putrescine/spermidine ABC transporter permease YP_008612707.1 958560 D 1064551 CDS YP_008612708.1 549478839 959389..959952 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 959952 1064551000895 IA1_04490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612708.1 959389 D 1064551 CDS YP_008612709.1 549478840 959995..961125 1 NC_022525.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 961125 rumB 1064551000896 rumB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 23S rRNA methyltransferase YP_008612709.1 959995 D 1064551 CDS YP_008612710.1 549478841 961408..962751 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS ascorbate transporter subunit IIC 962751 1064551000897 IA1_04500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS ascorbate transporter subunit IIC YP_008612710.1 961408 D 1064551 CDS YP_008612711.1 549478842 962781..963101 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter IIB 963101 1064551000898 IA1_04505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sugar transporter IIB YP_008612711.1 962781 D 1064551 CDS YP_008612712.1 549478843 963111..964598 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfatase 964598 1064551000899 IA1_04510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfatase YP_008612712.1 963111 D 1064551 CDS YP_008612713.1 549478844 complement(964817..965548) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine ABC transporter substrate-binding protein 965548 1064551000900 IA1_04515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginine ABC transporter substrate-binding protein YP_008612713.1 964817 R 1064551 CDS YP_008612714.1 549478845 complement(965785..966453) 1 NC_022525.1 with ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine transporter permease subunit ArtM 966453 artM 1064551000901 artM Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginine transporter permease subunit ArtM YP_008612714.1 965785 R 1064551 CDS YP_008612715.1 549478846 complement(966453..967169) 1 NC_022525.1 with ArtPMJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine transporter permease subunit ArtQ 967169 1064551000902 IA1_04525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginine transporter permease subunit ArtQ YP_008612715.1 966453 R 1064551 CDS YP_008612716.1 549478847 complement(967176..967907) 1 NC_022525.1 with ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine ABC transporter substrate-binding protein 967907 1064551000903 IA1_04530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginine ABC transporter substrate-binding protein YP_008612716.1 967176 R 1064551 CDS YP_008612717.1 549478848 complement(967925..968653) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter ATP-binding protein 968653 1064551000904 IA1_04535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid ABC transporter ATP-binding protein YP_008612717.1 967925 R 1064551 CDS YP_008612718.1 549478849 complement(968883..969398) 1 NC_022525.1 induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 969398 1064551000905 IA1_04540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein YP_008612718.1 968883 R 1064551 CDS YP_008612719.1 549478850 969526..969849 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 969849 1064551000906 IA1_04545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612719.1 969526 D 1064551 CDS YP_008612720.1 549478851 969846..970676 1 NC_022525.1 catalyzes the cleavage of the bond between muamic acid and l-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase 970676 1064551000907 IA1_04550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetylmuramoyl-L-alanine amidase YP_008612720.1 969846 D 1064551 CDS YP_008612721.1 549478852 complement(970673..971686) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 971686 1064551000908 IA1_04555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612721.1 970673 R 1064551 CDS YP_008612722.1 549478853 complement(971782..973215) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 973215 1064551000909 IA1_04560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612722.1 971782 R 1064551 CDS YP_008612723.1 549478854 complement(973226..974227) 1 NC_022525.1 low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine; Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine aldolase 974227 1064551000910 IA1_04565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 threonine aldolase YP_008612723.1 973226 R 1064551 CDS YP_008612724.1 549478855 complement(974266..975984) 1 NC_022525.1 catalyzes the formation of acetate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate dehydrogenase 975984 1064551000911 IA1_04570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyruvate dehydrogenase YP_008612724.1 974266 R 1064551 CDS YP_008612725.1 549478856 complement(976142..977113) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 977113 1064551000912 IA1_04575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase YP_008612725.1 976142 R 1064551 CDS YP_008612726.1 549478857 complement(977122..978774) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxylamine reductase 978774 1064551000913 IA1_04580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydroxylamine reductase YP_008612726.1 977122 R 1064551 CDS YP_008612727.1 549478858 complement(978918..979817) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 979817 1064551000914 IA1_04585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612727.1 978918 R 1064551 CDS YP_008612728.1 549478859 980019..981677 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 981677 1064551000915 IA1_04590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612728.1 980019 D 1064551 CDS YP_008612729.1 549481830 complement(981674..982624) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; VirK 982624 1064551000916 IA1_04595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 VirK YP_008612729.1 981674 R 1064551 CDS YP_008612730.1 549478860 982770..983888 1 NC_022525.1 confers macrolide resistance via active drug efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; macrolide transporter subunit MacA 983888 1064551000917 IA1_04600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 macrolide transporter subunit MacA YP_008612730.1 982770 D 1064551 CDS YP_008612731.1 549478861 983885..985831 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter 985831 1064551000918 IA1_04605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ABC transporter YP_008612731.1 983885 D 1064551 CDS YP_008612732.1 549478862 complement(985961..986182) 1 NC_022525.1 inhibits DNA replication at both initiation and elongation steps; stationary phase and starvation inducible; Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein 986182 1064551000919 IA1_04610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cold-shock protein YP_008612732.1 985961 R 1064551 CDS YP_008612733.1 549478863 986506..986826 1 NC_022525.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent Clp protease adaptor protein ClpS 986826 clpS 1064551000920 clpS Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-dependent Clp protease adaptor protein ClpS YP_008612733.1 986506 D 1064551 CDS YP_008612734.1 549478864 986857..989133 1 NC_022525.1 ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent Clp protease ATP-binding protein 989133 clpA 1064551000921 clpA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-dependent Clp protease ATP-binding protein YP_008612734.1 986857 D 1064551 CDS YP_008612735.1 549478865 complement(989815..990492) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinamidase 990492 1064551000923 IA1_04630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nicotinamidase YP_008612735.1 989815 R 1064551 CDS YP_008612736.1 549478866 complement(990512..991372) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; quercetin 2,3-dioxygenase 991372 1064551000924 IA1_04635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 quercetin 2,3-dioxygenase YP_008612736.1 990512 R 1064551 CDS YP_008612737.1 549478867 991481..992392 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 992392 1064551000925 IA1_04640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcriptional regulator YP_008612737.1 991481 D 1064551 CDS YP_008612738.1 549478868 complement(992483..992701) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor IF-1 992701 1064551000926 IA1_04645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 translation initiation factor IF-1 YP_008612738.1 992483 R 1064551 CDS YP_008612739.1 549478869 complement(993013..993717) 1 NC_022525.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucyl/phenylalanyl-tRNA--protein transferase 993717 aat 1064551000927 aat Salmonella enterica subsp. enterica serovar Thompson str. RM6836 leucyl/phenylalanyl-tRNA--protein transferase YP_008612739.1 993013 R 1064551 CDS YP_008612740.1 549478870 complement(993762..995483) 1 NC_022525.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein 995483 1064551000928 IA1_04655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathione ABC transporter ATP-binding protein YP_008612740.1 993762 R 1064551 CDS YP_008612741.1 549478871 complement(995484..997250) 1 NC_022525.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein 997250 1064551000929 IA1_04660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathione ABC transporter ATP-binding protein YP_008612741.1 995484 R 1064551 CDS YP_008612742.1 549478872 complement(997364..998332) 1 NC_022525.1 catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin reductase 998332 1064551000930 IA1_04665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thioredoxin reductase YP_008612742.1 997364 R 1064551 CDS YP_008612743.1 549478873 998879..999373 1 NC_022525.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; AsnC family transcriptional regulator 999373 1064551000931 IA1_04670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 AsnC family transcriptional regulator YP_008612743.1 998879 D 1064551 CDS YP_008612744.1 549481831 999508..1003470 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cell division protein FtsK 1003470 1064551000932 IA1_04675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsK YP_008612744.1 999508 D 1064551 CDS YP_008612745.1 549478874 1003610..1004224 1 NC_022525.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein chaperone 1004224 lolA 1064551000933 lolA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein chaperone YP_008612745.1 1003610 D 1064551 CDS YP_008612746.1 549478875 1004234..1005577 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase RarA 1005577 1064551000934 IA1_04685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 recombinase RarA YP_008612746.1 1004234 D 1064551 CDS YP_008612747.1 549478876 1005836..1007128 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; seryl-tRNA synthetase 1007128 1064551000935 IA1_04690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 seryl-tRNA synthetase YP_008612747.1 1005836 D 1064551 CDS YP_008612748.1 549478877 1007366..1009810 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit A 1009810 1064551000936 IA1_04695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dimethyl sulfoxide reductase subunit A YP_008612748.1 1007366 D 1064551 CDS YP_008612749.1 549478878 1009821..1010438 1 NC_022525.1 oxidoreductase, Fe-S subunit; terminal electron transfer protein for the reduction of DMSO; Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit B 1010438 1064551000937 IA1_04700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dimethyl sulfoxide reductase subunit B YP_008612749.1 1009821 D 1064551 CDS YP_008612750.1 549478879 1010440..1011303 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit C 1011303 1064551000938 IA1_04705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dimethyl sulfoxide reductase subunit C YP_008612750.1 1010440 D 1064551 CDS YP_008612751.1 549478880 1011653..1012801 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 1012801 1064551000939 IA1_04710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MFS transporter YP_008612751.1 1011653 D 1064551 CDS YP_008612752.1 549478881 1013019..1014440 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1014440 1064551000940 IA1_04715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008612752.1 1013019 D 1064551 CDS YP_008612753.1 549478882 complement(1014733..1015530) 1 NC_022525.1 activates pyruvate formate-lyase 1 under anaerobic conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate formate lyase-activating protein 1015530 pflA 1064551000941 pflA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyruvate formate lyase-activating protein YP_008612753.1 1014733 R 1064551 CDS YP_008612754.1 549481832 complement(1015649..1015816) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1015816 1064551000942 IA1_04725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612754.1 1015649 R 1064551 CDS YP_008612755.1 549478883 1016106..1017065 1 NC_022525.1 involved in bacterial survival in the host cell; involved in macrophage replication and filament formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 1 protein SopD2 1017065 1064551000943 IA1_04730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island 1 protein SopD2 YP_008612755.1 1016106 D 1064551 CDS YP_008612756.1 549478884 complement(1017141..1019423) 1 NC_022525.1 formate acetyltransferase; catalyzes the formation of formate and acetyl-CoA from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; keto-acid formate acetyltransferase 1019423 1064551000944 IA1_04735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 keto-acid formate acetyltransferase YP_008612756.1 1017141 R 1064551 CDS YP_008612757.1 549478885 complement(1019483..1020340) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; formate transporter 1020340 1064551000945 IA1_04740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate transporter YP_008612757.1 1019483 R 1064551 CDS YP_008612758.1 549478886 complement(1020745..1022538) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1022538 1064551000946 IA1_04745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612758.1 1020745 R 1064551 CDS YP_008612759.1 549478887 1022642..1023334 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1023334 1064551000947 IA1_04750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612759.1 1022642 D 1064551 CDS YP_008612760.1 549478888 1023520..1024608 1 NC_022525.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; catalyzes 4 phosphohydroxy L-threonine from 2-oxo 3 hydroxy 4- phosphobutanoate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phosphoserine/phosphohydroxythreonine aminotransferase 1024608 1064551000948 IA1_04755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-phosphoserine/phosphohydroxythreonine aminotransferase YP_008612760.1 1023520 D 1064551 CDS YP_008612761.1 549478889 1024679..1025962 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phosphoshikimate 1-carboxyvinyltransferase 1025962 1064551000949 IA1_04760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-phosphoshikimate 1-carboxyvinyltransferase YP_008612761.1 1024679 D 1064551 CDS YP_008612762.1 549478890 1026105..1026866 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; metalloprotease 1026866 1064551000950 IA1_04765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 metalloprotease YP_008612762.1 1026105 D 1064551 CDS YP_008612763.1 549478891 1027039..1027722 1 NC_022525.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytidylate kinase 1027722 cmk 1064551000951 cmk Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytidylate kinase YP_008612763.1 1027039 D 1064551 CDS YP_008612764.1 549478892 1027836..1029509 1 NC_022525.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S1 1029509 rpsA 1064551000952 rpsA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S1 YP_008612764.1 1027836 D 1064551 CDS YP_008612765.1 549478893 1029665..1029949 1 NC_022525.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; Derived by automated computational analysis using gene prediction method: Protein Homology.; integration host factor subunit beta 1029949 ihfB 1064551000953 ihfB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 integration host factor subunit beta YP_008612765.1 1029665 D 1064551 CDS YP_008612766.1 549478894 1030179..1032443 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; competence protein ComEC 1032443 1064551000954 IA1_04785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 competence protein ComEC YP_008612766.1 1030179 D 1064551 CDS YP_008612767.1 549478895 1032480..1034228 1 NC_022525.1 involved in the transport of lipid A across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein 1034228 1064551000955 IA1_04790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-binding protein YP_008612767.1 1032480 D 1064551 CDS YP_008612768.1 549478896 1034225..1035202 1 NC_022525.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; tetraacyldisaccharide 4'-kinase 1035202 lpxK 1064551000956 lpxK Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tetraacyldisaccharide 4'-kinase YP_008612768.1 1034225 D 1064551 CDS YP_008612769.1 549478897 1035246..1036478 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1036478 1064551000957 IA1_04800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612769.1 1035246 D 1064551 CDS YP_008612770.1 549478898 1036530..1036712 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1036712 1064551000958 IA1_04805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612770.1 1036530 D 1064551 CDS YP_008612771.1 549478899 1036709..1037455 1 NC_022525.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-manno-octulosonate cytidylyltransferase 1037455 1064551000959 IA1_04810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-deoxy-manno-octulosonate cytidylyltransferase YP_008612771.1 1036709 D 1064551 CDS YP_008612772.1 549478900 1037666..1038559 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1038559 1064551000960 IA1_04815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612772.1 1037666 D 1064551 CDS YP_008612773.1 549478901 complement(1038539..1039315) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1039315 1064551000961 IA1_04820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612773.1 1038539 R 1064551 CDS YP_008612774.1 549478902 1039451..1040254 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosyl-L-methionine-dependent methyltransferase 1040254 1064551000962 IA1_04825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 S-adenosyl-L-methionine-dependent methyltransferase YP_008612774.1 1039451 D 1064551 CDS YP_008612775.1 549478903 1040247..1041569 1 NC_022525.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; condesin subunit F 1041569 1064551000963 IA1_04830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 condesin subunit F YP_008612775.1 1040247 D 1064551 CDS YP_008612776.1 549478904 1041550..1042254 1 NC_022525.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; condesin subunit E 1042254 1064551000964 IA1_04835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 condesin subunit E YP_008612776.1 1041550 D 1064551 CDS YP_008612777.1 549481833 1042254..1046720 1 NC_022525.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cell division protein MukB 1046720 mukB 1064551000965 mukB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein MukB YP_008612777.1 1042254 D 1064551 CDS YP_008612778.1 549478905 1047065..1048912 1 NC_022525.1 catalyzes the formation of a meso-diaminopimelyl- meso-diaminopimelyl crosslink; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein L,D-transpeptidase 1048912 1064551000966 IA1_04845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 murein L,D-transpeptidase YP_008612778.1 1047065 D 1064551 CDS YP_008612779.1 549478906 1049170..1049718 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1049718 1064551000967 IA1_04850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612779.1 1049170 D 1064551 CDS YP_008612780.1 549478907 1049746..1050393 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1050393 1064551000968 IA1_04855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612780.1 1049746 D 1064551 CDS YP_008612781.1 549478908 complement(1050455..1051645) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid aminotransferase 1051645 1064551000969 IA1_04860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aromatic amino acid aminotransferase YP_008612781.1 1050455 R 1064551 CDS YP_008612782.1 549478909 complement(1051830..1052921) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein F 1052921 1064551000970 IA1_04865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane protein F YP_008612782.1 1051830 R 1064551 CDS YP_008612783.1 549478910 complement(1053527..1054927) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; asparaginyl-tRNA synthetase 1054927 1064551000971 IA1_04870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 asparaginyl-tRNA synthetase YP_008612783.1 1053527 R 1064551 CDS YP_008612784.1 549478911 complement(1055128..1055589) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 1055589 1064551000972 IA1_04875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-binding protein YP_008612784.1 1055128 R 1064551 CDS YP_008612785.1 549481834 complement(1055586..1055807) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1055807 1064551000973 IA1_04880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612785.1 1055586 R 1064551 CDS YP_008612786.1 549481835 1055906..1057120 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; diaminopropionate ammonia-lyase 1057120 1064551000974 IA1_04885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diaminopropionate ammonia-lyase YP_008612786.1 1055906 D 1064551 CDS YP_008612787.1 549481836 1057366..1058799 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; amino acid:proton symporter 1058799 1064551000975 IA1_04890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid:proton symporter YP_008612787.1 1057366 D 1064551 CDS YP_008612788.1 549478912 complement(1058880..1060082) 1 NC_022525.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinate phosphoribosyltransferase 1060082 1064551000976 IA1_04895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nicotinate phosphoribosyltransferase YP_008612788.1 1058880 R 1064551 CDS YP_008612789.1 549478913 complement(1060277..1061569) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase 1061569 1064551000977 IA1_04900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 integrase YP_008612789.1 1060277 R 1064551 CDS YP_008612790.1 549478914 complement(1061614..1061862) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; excisionase 1061862 1064551000978 IA1_04905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 excisionase YP_008612790.1 1061614 R 1064551 CDS YP_008612791.1 549481837 complement(1061903..1062142) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1062142 1064551000979 IA1_04910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612791.1 1061903 R 1064551 CDS YP_008612792.1 549478915 complement(1062185..1063294) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; enterohemolysin 1063294 1064551000980 IA1_04915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 enterohemolysin YP_008612792.1 1062185 R 1064551 CDS YP_008612793.1 549478916 complement(1063305..1066232) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease 1066232 1064551000981 IA1_04920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exodeoxyribonuclease YP_008612793.1 1063305 R 1064551 CDS YP_008612794.1 549481838 complement(1066359..1066646) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA breaking-rejoining protein 1066646 1064551000982 IA1_04925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA breaking-rejoining protein YP_008612794.1 1066359 R 1064551 CDS YP_008612795.1 549481839 complement(1066731..1066901) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA breaking-rejoining protein 1066901 1064551000983 IA1_04930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA breaking-rejoining protein YP_008612795.1 1066731 R 1064551 CDS YP_008612796.1 549481840 complement(1066894..1067010) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1067010 1064551000984 IA1_04935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612796.1 1066894 R 1064551 CDS YP_008612797.1 549478917 1067298..1067504 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1067504 1064551000985 IA1_04940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612797.1 1067298 D 1064551 CDS YP_008612798.1 549481841 complement(1067531..1068472) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1068472 1064551000986 IA1_04945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612798.1 1067531 R 1064551 CDS YP_008612799.1 549481842 complement(1068578..1068973) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1068973 1064551000987 IA1_04950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612799.1 1068578 R 1064551 CDS YP_008612800.1 549481843 1069078..1069314 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Rha family transcriptional regulator 1069314 1064551000988 IA1_04955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Rha family transcriptional regulator YP_008612800.1 1069078 D 1064551 CDS YP_008612801.1 549481844 1069334..1069654 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; repressor 1069654 1064551000989 IA1_04960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 repressor YP_008612801.1 1069334 D 1064551 CDS YP_008612802.1 549478918 1069739..1070722 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 1070722 1064551000990 IA1_04965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 regulatory protein YP_008612802.1 1069739 D 1064551 CDS YP_008612803.1 549478919 1070725..1071474 1 NC_022525.1 acts to load the DnaB helicase onto the initiation site during DNA replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA replication protein DnaC 1071474 1064551000991 IA1_04970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA replication protein DnaC YP_008612803.1 1070725 D 1064551 CDS YP_008612804.1 549481845 1071485..1071832 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA-binding protein 1071832 1064551000992 IA1_04975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-binding protein YP_008612804.1 1071485 D 1064551 CDS YP_008612805.1 549481846 1071829..1072149 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1072149 1064551000993 IA1_04980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612805.1 1071829 D 1064551 CDS YP_008612806.1 549481847 1072149..1072394 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1072394 1064551000994 IA1_04985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612806.1 1072149 D 1064551 CDS YP_008612807.1 549481848 1072705..1073922 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1073922 1064551000995 IA1_04990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612807.1 1072705 D 1064551 CDS YP_008612808.1 549481849 1074065..1074391 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1074391 1064551000996 IA1_04995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612808.1 1074065 D 1064551 CDS YP_008612809.1 549478920 1074639..1074872 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA damage-inducible protein I 1074872 1064551000997 IA1_05000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA damage-inducible protein I YP_008612809.1 1074639 D 1064551 CDS YP_008612810.1 549478921 1075272..1075874 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1075874 1064551000998 IA1_05005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612810.1 1075272 D 1064551 CDS YP_008612811.1 549481850 1075874..1076080 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1076080 1064551000999 IA1_05010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612811.1 1075874 D 1064551 CDS YP_008612812.1 549478922 1076083..1076694 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1076694 1064551001000 IA1_05015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612812.1 1076083 D 1064551 CDS YP_008612813.1 549478923 1076827..1077624 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone 1077624 1064551001001 IA1_05020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molecular chaperone YP_008612813.1 1076827 D 1064551 CDS YP_008612814.1 549481851 complement(1078284..1078733) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1078733 1064551001002 IA1_05025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612814.1 1078284 R 1064551 CDS YP_008612815.1 549478924 1080050..1080385 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; holin 1080385 1064551001004 IA1_05035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 holin YP_008612815.1 1080050 D 1064551 CDS YP_008612816.1 549478925 1080372..1080821 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme 1080821 1064551001005 IA1_05040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lysozyme YP_008612816.1 1080372 D 1064551 CDS YP_008612817.1 549478926 1080818..1081288 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase 1081288 1064551001006 IA1_05045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidase YP_008612817.1 1080818 D 1064551 CDS YP_008612818.1 549481852 1081617..1082120 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1082120 1064551001007 IA1_05050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612818.1 1081617 D 1064551 CDS YP_008612819.1 549478927 complement(1082377..1082778) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Inhibitor of g-type lysozyme 1082778 1064551001008 IA1_05055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Inhibitor of g-type lysozyme YP_008612819.1 1082377 R 1064551 CDS YP_008612820.1 549478928 1083064..1083609 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase 1083609 1064551001009 IA1_05060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 terminase YP_008612820.1 1083064 D 1064551 CDS YP_008612821.1 549478929 1083581..1085512 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase 1085512 1064551001010 IA1_05065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 terminase YP_008612821.1 1083581 D 1064551 CDS YP_008612822.1 549478930 1085496..1085699 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; head-tail joining protein 1085699 1064551001011 IA1_05070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 head-tail joining protein YP_008612822.1 1085496 D 1064551 CDS YP_008612823.1 549478931 1085696..1087276 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; plasmid partitioning protein ParB 1087276 1064551001012 IA1_05075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 plasmid partitioning protein ParB YP_008612823.1 1085696 D 1064551 CDS YP_008612824.1 549478932 1087266..1088762 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; scaffold protein 1088762 1064551001013 IA1_05080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 scaffold protein YP_008612824.1 1087266 D 1064551 CDS YP_008612825.1 549478933 1088775..1089122 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Head decoration protein 1089122 1064551001014 IA1_05085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Head decoration protein YP_008612825.1 1088775 D 1064551 CDS YP_008612826.1 549478934 1089177..1090205 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; head protein 1090205 1064551001015 IA1_05090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 head protein YP_008612826.1 1089177 D 1064551 CDS YP_008612827.1 549481853 1090263..1090628 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA packaging protein 1090628 1064551001016 IA1_05095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA packaging protein YP_008612827.1 1090263 D 1064551 CDS YP_008612828.1 549478935 1090639..1091016 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tail attachment protein 1091016 1064551001017 IA1_05100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tail attachment protein YP_008612828.1 1090639 D 1064551 CDS YP_008612829.1 549478936 1091003..1091581 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1091581 1064551001018 IA1_05105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612829.1 1091003 D 1064551 CDS YP_008612830.1 549478937 1091578..1091979 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1091979 1064551001019 IA1_05110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tail protein YP_008612830.1 1091578 D 1064551 CDS YP_008612831.1 549478938 1091990..1092733 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1092733 1064551001020 IA1_05115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tail protein YP_008612831.1 1091990 D 1064551 CDS YP_008612832.1 549478939 1092784..1093179 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; minor tail protein 1093179 1064551001021 IA1_05120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 minor tail protein YP_008612832.1 1092784 D 1064551 CDS YP_008612833.1 549478940 1093197..1093514 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1093514 1064551001022 IA1_05125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tail protein YP_008612833.1 1093197 D 1064551 CDS YP_008612834.1 549478941 1093486..1096581 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1096581 1064551001023 IA1_05130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tail protein YP_008612834.1 1093486 D 1064551 CDS YP_008612835.1 549478942 1096584..1096913 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1096913 1064551001024 IA1_05135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tail protein YP_008612835.1 1096584 D 1064551 CDS YP_008612836.1 549478943 1096923..1097621 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1097621 1064551001025 IA1_05140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tail protein YP_008612836.1 1096923 D 1064551 CDS YP_008612837.1 549478944 1097730..1098365 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail protein 1098365 1064551001026 IA1_05145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phage tail protein YP_008612837.1 1097730 D 1064551 CDS YP_008612838.1 549478945 1098263..1098910 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1098910 1064551001027 IA1_05150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tail protein YP_008612838.1 1098263 D 1064551 CDS YP_008612839.1 549478946 1098972..1102334 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; host specificity protein J 1102334 1064551001028 IA1_05155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 host specificity protein J YP_008612839.1 1098972 D 1064551 CDS YP_008612840.1 549481854 1102373..1102615 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1102615 1064551001029 IA1_05160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612840.1 1102373 D 1064551 CDS YP_008612841.1 549481855 1103956..1105164 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1105164 1064551001031 IA1_05170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612841.1 1103956 D 1064551 CDS YP_008612842.1 549478947 1105164..1105745 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tail assembly protein 1105745 1064551001032 IA1_05175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tail assembly protein YP_008612842.1 1105164 D 1064551 CDS YP_008612843.1 549481856 complement(1106172..1106324) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1106324 1064551001033 IA1_05180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612843.1 1106172 R 1064551 CDS YP_008612844.1 549481857 complement(1106575..1107468) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1107468 1064551001034 IA1_05185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612844.1 1106575 R 1064551 CDS YP_008612845.1 549481858 1107477..1107620 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1107620 1064551001035 IA1_05190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612845.1 1107477 D 1064551 CDS YP_008612846.1 549481859 complement(1108633..1109259) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1109259 1064551001036 IA1_05195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612846.1 1108633 R 1064551 CDS YP_008612847.1 549478948 complement(1109909..1110115) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MsgA 1110115 1064551001037 IA1_05200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MsgA YP_008612847.1 1109909 R 1064551 CDS YP_008612848.1 549478949 1110542..1113154 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase N 1113154 pepN 1064551001038 pepN Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aminopeptidase N YP_008612848.1 1110542 D 1064551 CDS YP_008612849.1 549478950 1113362..1114372 1 NC_022525.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroorotate dehydrogenase 1114372 1064551001039 IA1_05210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydroorotate dehydrogenase YP_008612849.1 1113362 D 1064551 CDS YP_008612850.1 549478951 1114538..1115080 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein ZapC 1115080 1064551001040 IA1_05215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein ZapC YP_008612850.1 1114538 D 1064551 CDS YP_008612851.1 549478952 complement(1115077..1116186) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin 1116186 1064551001041 IA1_05220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferredoxin YP_008612851.1 1115077 R 1064551 CDS YP_008612852.1 549478953 1116285..1118393 1 NC_022525.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 1118393 rlmL 1064551001042 rlmL Salmonella enterica subsp. enterica serovar Thompson str. RM6836 23S rRNA methyltransferase YP_008612852.1 1116285 D 1064551 CDS YP_008612853.1 549478954 1118406..1120313 1 NC_022525.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter ATPase 1120313 1064551001043 IA1_05230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heme ABC transporter ATPase YP_008612853.1 1118406 D 1064551 CDS YP_008612854.1 549478955 1120328..1121581 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; paraquat-inducible protein A 1121581 1064551001044 IA1_05235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 paraquat-inducible protein A YP_008612854.1 1120328 D 1064551 CDS YP_008612855.1 549481860 1121586..1123226 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; paraquat-inducible protein B 1123226 1064551001045 IA1_05240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 paraquat-inducible protein B YP_008612855.1 1121586 D 1064551 CDS YP_008612856.1 549481861 1123223..1123786 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1123786 1064551001046 IA1_05245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612856.1 1123223 D 1064551 CDS YP_008612857.1 549478956 complement(1124309..1124827) 1 NC_022525.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxydecanoyl-ACP dehydratase 1124827 1064551001047 IA1_05250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-hydroxydecanoyl-ACP dehydratase YP_008612857.1 1124309 R 1064551 CDS YP_008612858.1 549478957 complement(1124896..1126656) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Lon protease 1126656 1064551001048 IA1_05255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Lon protease YP_008612858.1 1124896 R 1064551 CDS YP_008612859.1 549478958 1126842..1127294 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Ter macrodomain organizer matS-binding protein 1127294 1064551001049 IA1_05260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Ter macrodomain organizer matS-binding protein YP_008612859.1 1126842 D 1064551 CDS YP_008612860.1 549478959 complement(1127366..1128475) 1 NC_022525.1 OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1128475 1064551001050 IA1_05265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612860.1 1127366 R 1064551 CDS YP_008612861.1 549478960 complement(1128776..1129285) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; SOS cell division inhibitor 1129285 1064551001051 IA1_05270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 SOS cell division inhibitor YP_008612861.1 1128776 R 1064551 CDS YP_008612862.1 549478961 1129502..1130107 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Crp/Fnr family transcriptional regulator 1130107 1064551001052 IA1_05275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Crp/Fnr family transcriptional regulator YP_008612862.1 1129502 D 1064551 CDS YP_008612863.1 549478962 complement(1130094..1132247) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1132247 1064551001053 IA1_05280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612863.1 1130094 R 1064551 CDS YP_008612864.1 549478963 complement(1132266..1132712) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1132712 1064551001054 IA1_05285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612864.1 1132266 R 1064551 CDS YP_008612865.1 549481862 1132836..1134890 1 NC_022525.1 catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA helicase IV 1134890 helD 1064551001055 helD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA helicase IV YP_008612865.1 1132836 D 1064551 CDS YP_008612866.1 549478964 complement(1134926..1135384) 1 NC_022525.1 catalyzes the formation of methylglyoxal from glycerone phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; methylglyoxal synthase 1135384 mgsA 1064551001056 mgsA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methylglyoxal synthase YP_008612866.1 1134926 R 1064551 CDS YP_008612867.1 549478965 complement(1135479..1136141) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1136141 1064551001057 IA1_05300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612867.1 1135479 R 1064551 CDS YP_008612868.1 549478966 1136312..1136728 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1136728 1064551001058 IA1_05305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612868.1 1136312 D 1064551 CDS YP_008612869.1 549478967 complement(1136773..1137090) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein HspQ 1137090 1064551001059 IA1_05310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heat shock protein HspQ YP_008612869.1 1136773 R 1064551 CDS YP_008612870.1 549478968 complement(1137148..1138359) 1 NC_022525.1 SAM-dependent;catalyzes the methylation of cytosine at position 1962 of the 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 1138359 1064551001060 IA1_05315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 23S rRNA methyltransferase YP_008612870.1 1137148 R 1064551 CDS YP_008612871.1 549478969 1138574..1139122 1 NC_022525.1 DLP12 prophage; similar to PEBP/RK1P protein family in eukaryotes that inhibits MEK phosphorylation by Raf-1; crystal structure suggests similar properties but exact function is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.; kinase inhibitor 1139122 1064551001061 IA1_05320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 kinase inhibitor YP_008612871.1 1138574 D 1064551 CDS YP_008612872.1 549478970 1139148..1139927 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 1139927 1064551001062 IA1_05325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 AraC family transcriptional regulator YP_008612872.1 1139148 D 1064551 CDS YP_008612873.1 549478971 1139976..1140257 1 NC_022525.1 catalyzes the hydrolysis of acylphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; acylphosphatase 1140257 1064551001063 IA1_05330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acylphosphatase YP_008612873.1 1139976 D 1064551 CDS YP_008612874.1 549478972 complement(1140254..1140583) 1 NC_022525.1 transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur transfer protein TusE 1140583 1064551001064 IA1_05335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfur transfer protein TusE YP_008612874.1 1140254 R 1064551 CDS YP_008612875.1 549478973 complement(1140670..1141329) 1 NC_022525.1 binds to the HflBKC complex which modulates FtsH activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; HflBKC-binding inner membrane protein 1141329 1064551001065 IA1_05340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 HflBKC-binding inner membrane protein YP_008612875.1 1140670 R 1064551 CDS YP_008612876.1 549481863 1141395..1141544 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1141544 1064551001066 IA1_05345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612876.1 1141395 D 1064551 CDS YP_008612877.1 549478974 complement(1142849..1143724) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; effector protein PipB 1143724 1064551001069 IA1_05360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 effector protein PipB YP_008612877.1 1142849 R 1064551 CDS YP_008612878.1 549478975 complement(1144272..1144613) 1 NC_022525.1 SigE; IpgE; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion chaperone protein SigE 1144613 1064551001070 IA1_05365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion chaperone protein SigE YP_008612878.1 1144272 R 1064551 CDS YP_008612879.1 549478976 complement(1144630..1146315) 1 NC_022525.1 pathogenicity island 1 protein; catalyzes the formation of phosphatidylinositol-3 phosphate from phosphatidylinositol-3,4,5-triphosphate; involved in the formation and maintenance of Salmonella-containing vacuole in the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; inositol phosphate phosphatase SopB 1146315 sopB 1064551001071 sopB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 inositol phosphate phosphatase SopB YP_008612879.1 1144630 R 1064551 CDS YP_008612880.1 549481864 1146647..1146817 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1146817 1064551001072 IA1_05375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612880.1 1146647 D 1064551 CDS YP_008612881.1 549481865 complement(1146818..1146928) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1146928 1064551001073 IA1_05380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612881.1 1146818 R 1064551 CDS YP_008612882.1 549481866 complement(1147037..1148506) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; peptidase 1148506 1064551001074 IA1_05385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidase YP_008612882.1 1147037 R 1064551 CDS YP_008612883.1 549478977 complement(1148679..1150043) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase 1150043 1064551001075 IA1_05390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensor histidine kinase YP_008612883.1 1148679 R 1064551 CDS YP_008612884.1 549478978 complement(1150036..1150716) 1 NC_022525.1 response regulator in two-component regulatory system with BasS; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1150716 1064551001076 IA1_05395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612884.1 1150036 R 1064551 CDS YP_008612885.1 549478979 1150852..1151262 1 NC_022525.1 catalyzes the formation of 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline from 5-hydroxyisourate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyisourate hydrolase 1151262 1064551001077 IA1_05400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydroxyisourate hydrolase YP_008612885.1 1150852 D 1064551 CDS YP_008612886.1 549478980 complement(1151595..1152107) 1 NC_022525.1 catalyzes the reduction of MN, FAD and riboflavin by NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxyphenylacetate 3-monooxygenase 1152107 hpaC 1064551001078 hpaC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-hydroxyphenylacetate 3-monooxygenase YP_008612886.1 1151595 R 1064551 CDS YP_008612887.1 549478981 complement(1152125..1153687) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Pyoverdin chromophore biosynthetic protein pvcC 1153687 1064551001079 IA1_05410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Pyoverdin chromophore biosynthetic protein pvcC YP_008612887.1 1152125 R 1064551 CDS YP_008612888.1 549478982 complement(1153905..1154345) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; homoprotocatechuate degradative operon repressor 1154345 1064551001080 IA1_05415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 homoprotocatechuate degradative operon repressor YP_008612888.1 1153905 R 1064551 CDS YP_008612889.1 549478983 1154620..1155909 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase 1155909 1064551001081 IA1_05420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase YP_008612889.1 1154620 D 1064551 CDS YP_008612890.1 549478984 1155906..1157372 1 NC_022525.1 catalyzes the formation of betaine from betaine aldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; betaine-aldehyde dehydrogenase 1157372 1064551001082 IA1_05425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 betaine-aldehyde dehydrogenase YP_008612890.1 1155906 D 1064551 CDS YP_008612891.1 549478985 1157374..1158225 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1158225 1064551001083 IA1_05430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3,4-dihydroxyphenylacetate 2,3-dioxygenase YP_008612891.1 1157374 D 1064551 CDS YP_008612892.1 549478986 1158235..1158615 1 NC_022525.1 catalyzes the formation of 5-oxo-pent-3-ene-1,2,5-tricarboxylic acid from 5-carboxymethyl-2-hydroxy-muconic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-carboxymethyl-2-hydroxymuconate isomerase 1158615 1064551001084 IA1_05435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5-carboxymethyl-2-hydroxymuconate isomerase YP_008612892.1 1158235 D 1064551 CDS YP_008612893.1 549478987 1158760..1159563 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxo-hept-3-ene-1,7-dioate hydratase 1159563 1064551001085 IA1_05440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-oxo-hept-3-ene-1,7-dioate hydratase YP_008612893.1 1158760 D 1064551 CDS YP_008612894.1 549478988 1159574..1160365 1 NC_022525.1 catalyzes the retro-aldol cleavage of 2-keto-3-deoxy-L-rhamnonate to pyruvate and lactaldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxy-L-rhamnonate aldolase 1160365 1064551001086 IA1_05445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-keto-3-deoxy-L-rhamnonate aldolase YP_008612894.1 1159574 D 1064551 CDS YP_008612895.1 549478989 1160437..1161813 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxyphenylacetate permease 1161813 1064551001087 IA1_05450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-hydroxyphenylacetate permease YP_008612895.1 1160437 D 1064551 CDS YP_008612896.1 549478990 1161823..1162719 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxyphenylacetate catabolism protein 1162719 1064551001088 IA1_05455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-hydroxyphenylacetate catabolism protein YP_008612896.1 1161823 D 1064551 CDS YP_008612897.1 549478991 1162733..1163671 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1163671 1064551001089 IA1_05460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612897.1 1162733 D 1064551 CDS YP_008612898.1 549478992 complement(1165094..1165399) 1 NC_022525.1 with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone-modulator protein CbpM 1165399 1064551001090 IA1_05465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chaperone-modulator protein CbpM YP_008612898.1 1165094 R 1064551 CDS YP_008612899.1 549478993 complement(1165399..1166319) 1 NC_022525.1 functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 1166319 1064551001091 IA1_05470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-binding protein YP_008612899.1 1165399 R 1064551 CDS YP_008612900.1 549478994 1166555..1166917 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; copper-resistance protein 1166917 1064551001092 IA1_05475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 copper-resistance protein YP_008612900.1 1166555 D 1064551 CDS YP_008612901.1 549478995 1166966..1168852 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-disulfide reductase 1168852 1064551001093 IA1_05480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protein-disulfide reductase YP_008612901.1 1166966 D 1064551 CDS YP_008612902.1 549478996 1168849..1169472 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DSBA oxidoreductase 1169472 1064551001094 IA1_05485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DSBA oxidoreductase YP_008612902.1 1168849 D 1064551 CDS YP_008612903.1 549478997 1169462..1169968 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alkyl hydroperoxide reductase 1169968 1064551001095 IA1_05490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alkyl hydroperoxide reductase YP_008612903.1 1169462 D 1064551 CDS YP_008612904.1 549478998 1170101..1171342 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-1-phosphatase/inositol phosphatase 1171342 1064551001096 IA1_05495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucose-1-phosphatase/inositol phosphatase YP_008612904.1 1170101 D 1064551 CDS YP_008612905.1 549478999 complement(1171376..1171603) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1171603 1064551001097 IA1_05500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612905.1 1171376 R 1064551 CDS YP_008612906.1 549479000 complement(1171624..1172220) 1 NC_022525.1 catalyzes the transfer of electrons from NADH to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H:quinone oxidoreductase 1172220 1064551001098 IA1_05505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NAD(P)H:quinone oxidoreductase YP_008612906.1 1171624 R 1064551 CDS YP_008612907.1 549479001 1172605..1172772 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1172772 1064551001099 IA1_05510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612907.1 1172605 D 1064551 CDS YP_008612908.1 549479002 1172909..1173547 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1173547 1064551001100 IA1_05515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612908.1 1172909 D 1064551 CDS YP_008612909.1 549479003 complement(1173544..1173939) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1173939 1064551001101 IA1_05520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612909.1 1173544 R 1064551 CDS YP_008612910.1 549481867 complement(1173998..1177960) 1 NC_022525.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 1177960 putA 1064551001102 putA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_008612910.1 1173998 R 1064551 CDS YP_008612911.1 549481868 1178382..1179890 1 NC_022525.1 involved in the sodium dependent uptake of proline; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; proline:sodium symporter 1179890 1064551001103 IA1_05530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 proline:sodium symporter YP_008612911.1 1178382 D 1064551 CDS YP_008612912.1 549481869 1180508..1180804 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; protein phoH 1180804 1064551001104 IA1_05535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protein phoH YP_008612912.1 1180508 D 1064551 CDS YP_008612913.1 549479004 1180897..1181571 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate hydrolase 1181571 1064551001105 IA1_05540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleoside triphosphate hydrolase YP_008612913.1 1180897 D 1064551 CDS YP_008612914.1 549479005 complement(1181677..1182558) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmannosamine kinase 1182558 1064551001106 IA1_05545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetylmannosamine kinase YP_008612914.1 1181677 R 1064551 CDS YP_008612915.1 549479006 complement(1182844..1184340) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acetylneuraminate ABC transporter 1184340 1064551001107 IA1_05550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetylneuraminate ABC transporter YP_008612915.1 1182844 R 1064551 CDS YP_008612916.1 549479007 complement(1184682..1185362) 1 NC_022525.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmannosamine-6-phosphate 2-epimerase 1185362 1064551001108 IA1_05555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetylmannosamine-6-phosphate 2-epimerase YP_008612916.1 1184682 R 1064551 CDS YP_008612917.1 549479008 1185868..1187028 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylneuraminic acid mutarotase 1187028 1064551001109 IA1_05560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetylneuraminic acid mutarotase YP_008612917.1 1185868 D 1064551 CDS YP_008612918.1 549479009 1187074..1187766 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1187766 1064551001110 IA1_05565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612918.1 1187074 D 1064551 CDS YP_008612919.1 549479010 1188049..1189329 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sialic acid transporter 1189329 1064551001111 IA1_05570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sialic acid transporter YP_008612919.1 1188049 D 1064551 CDS YP_008612920.1 549481870 1189343..1190446 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; oxidoreductase 1190446 1064551001112 IA1_05575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase YP_008612920.1 1189343 D 1064551 CDS YP_008612921.1 549481871 complement(1190940..1191104) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1191104 1064551001114 IA1_05585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612921.1 1190940 R 1064551 CDS YP_008612922.1 549479011 1191103..1192041 1 NC_022525.1 catalyzes the formation of glycolate and glycerate from glyoxylate and hydroxypyruvate, respectively; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glyoxylate/hydroxypyruvate reductase A 1192041 ghrA 1064551001115 ghrA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional glyoxylate/hydroxypyruvate reductase A YP_008612922.1 1191103 D 1064551 CDS YP_008612923.1 549479012 1192126..1192863 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 1192863 1064551001116 IA1_05595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrolase YP_008612923.1 1192126 D 1064551 CDS YP_008612924.1 549479013 1192887..1193441 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone 1193441 1064551001117 IA1_05600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molecular chaperone YP_008612924.1 1192887 D 1064551 CDS YP_008612925.1 549479014 1193494..1194024 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1194024 1064551001118 IA1_05605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612925.1 1193494 D 1064551 CDS YP_008612926.1 549479015 complement(1194063..1194896) 1 NC_022525.1 involved in the stability of the curlin proteins during assembly; involved in the secretion of the major curlin subunit CsgA across the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1194896 1064551001119 IA1_05610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008612926.1 1194063 R 1064551 CDS YP_008612927.1 549479016 complement(1194923..1195339) 1 NC_022525.1 nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; curli assembly protein CsgF 1195339 1064551001120 IA1_05615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 curli assembly protein CsgF YP_008612927.1 1194923 R 1064551 CDS YP_008612928.1 549479017 complement(1195366..1195761) 1 NC_022525.1 chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; curli assembly protein CsgE 1195761 1064551001121 IA1_05620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 curli assembly protein CsgE YP_008612928.1 1195366 R 1064551 CDS YP_008612929.1 549479018 complement(1195766..1196416) 1 NC_022525.1 activates the csgBA and csgDEFG operons involved in biofilm formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1196416 1064551001122 IA1_05625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008612929.1 1195766 R 1064551 CDS YP_008612930.1 549479019 1197171..1197626 1 NC_022525.1 CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; Derived by automated computational analysis using gene prediction method: Protein Homology.; curlin 1197626 csgB 1064551001123 csgB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 curlin YP_008612930.1 1197171 D 1064551 CDS YP_008612931.1 549481872 1197668..1198123 1 NC_022525.1 the major structural subunit of curlin which assemble to form curli which can bind to fibronectin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; major curlin subunit 1198123 csgA 1064551001124 csgA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 major curlin subunit YP_008612931.1 1197668 D 1064551 CDS YP_008612932.1 549479020 1198185..1198511 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; curli production assembly protein CsgC 1198511 1064551001125 IA1_05640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 curli production assembly protein CsgC YP_008612932.1 1198185 D 1064551 CDS YP_008612933.1 549479021 1198642..1198962 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1198962 1064551001126 IA1_05645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612933.1 1198642 D 1064551 CDS YP_008612934.1 549481873 1199052..1199591 1 NC_022525.1 interacts and inactivates RNase III during cold shock; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RNase III inhibitor 1199591 1064551001127 IA1_05650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNase III inhibitor YP_008612934.1 1199052 D 1064551 CDS YP_008612935.1 549479022 1199527..1201014 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1201014 1064551001128 IA1_05655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612935.1 1199527 D 1064551 CDS YP_008612936.1 549479023 complement(1201031..1202185) 1 NC_022525.1 required for the transfer of succinyl residues to osmoregulated periplasmic glucans; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucan biosynthesis protein 1202185 opgC 1064551001129 opgC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucan biosynthesis protein YP_008612936.1 1201031 R 1064551 CDS YP_008612937.1 549479024 1202439..1203992 1 NC_022525.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucan biosynthesis protein D 1203992 mdoG 1064551001130 mdoG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucan biosynthesis protein D YP_008612937.1 1202439 D 1064551 CDS YP_008612938.1 549479025 1203985..1206528 1 NC_022525.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosyltransferase 1206528 1064551001131 IA1_05670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucosyltransferase YP_008612938.1 1203985 D 1064551 CDS YP_008612939.1 549479026 1206602..1206829 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 1206829 1064551001132 IA1_05675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein YP_008612939.1 1206602 D 1064551 CDS YP_008612940.1 549479027 complement(1206830..1207204) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; SecY/SecA suppressor protein 1207204 1064551001133 IA1_05680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 SecY/SecA suppressor protein YP_008612940.1 1206830 R 1064551 CDS YP_008612941.1 549479028 complement(1207286..1208500) 1 NC_022525.1 Confers resistance to fosfomycin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 1208500 1064551001134 IA1_05685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008612941.1 1207286 R 1064551 CDS YP_008612942.1 549479029 complement(1208655..1209575) 1 NC_022525.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid A biosynthesis lauroyl acyltransferase 1209575 1064551001135 IA1_05690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipid A biosynthesis lauroyl acyltransferase YP_008612942.1 1208655 R 1064551 CDS YP_008612943.1 549479030 1209795..1210847 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfurtransferase 1210847 1064551001136 IA1_05695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfurtransferase YP_008612943.1 1209795 D 1064551 CDS YP_008612944.1 549479031 complement(1210899..1211474) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1211474 1064551001137 IA1_05700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612944.1 1210899 R 1064551 CDS YP_008612945.1 549479032 complement(1211471..1212043) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome B561 1212043 1064551001138 IA1_05705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome B561 YP_008612945.1 1211471 R 1064551 CDS YP_008612946.1 549481874 complement(1212306..1212419) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1212419 1064551001139 IA1_05710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612946.1 1212306 R 1064551 CDS YP_008612947.1 549479033 complement(1212460..1213578) 1 NC_022525.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-methyltryptophan oxidase 1213578 solA 1064551001140 solA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-methyltryptophan oxidase YP_008612947.1 1212460 R 1064551 CDS YP_008612948.1 549479034 complement(1213691..1213945) 1 NC_022525.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm formation regulatory protein BssS 1213945 bssS 1064551001141 bssS Salmonella enterica subsp. enterica serovar Thompson str. RM6836 biofilm formation regulatory protein BssS YP_008612948.1 1213691 R 1064551 CDS YP_008612949.1 549479035 complement(1214235..1214480) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA damage-inducible protein I 1214480 1064551001142 IA1_05725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA damage-inducible protein I YP_008612949.1 1214235 R 1064551 CDS YP_008612950.1 549479036 complement(1214554..1215600) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroorotase 1215600 1064551001143 IA1_05730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydroorotase YP_008612950.1 1214554 R 1064551 CDS YP_008612951.1 549479037 complement(1215704..1216264) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 1216264 1064551001144 IA1_05735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein YP_008612951.1 1215704 R 1064551 CDS YP_008612952.1 549479038 complement(1216389..1217036) 1 NC_022525.1 cofactor involved in the reduction of disulfides; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin 1217036 1064551001145 IA1_05740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutaredoxin YP_008612952.1 1216389 R 1064551 CDS YP_008612953.1 549479039 complement(1217100..1218308) 1 NC_022525.1 Confers resistance to norfloxacin and enoxacin; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein MdtH 1218308 1064551001146 IA1_05745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug resistance protein MdtH YP_008612953.1 1217100 R 1064551 CDS YP_008612954.1 549479040 1218545..1219129 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine acetyltransferase 1219129 1064551001147 IA1_05750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alanine acetyltransferase YP_008612954.1 1218545 D 1064551 CDS YP_008612955.1 549479041 1219165..1219812 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1219812 1064551001148 IA1_05755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612955.1 1219165 D 1064551 CDS YP_008612956.1 549479042 1219814..1220737 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; virulence factor MviM 1220737 1064551001149 IA1_05760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 virulence factor MviM YP_008612956.1 1219814 D 1064551 CDS YP_008612957.1 549479043 1221002..1222576 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1222576 1064551001150 IA1_05765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612957.1 1221002 D 1064551 CDS YP_008612958.1 549479044 complement(1222658..1223080) 1 NC_022525.1 export chaperone for FlgK and FlgL; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagella synthesis chaperone protein FlgN 1223080 1064551001151 IA1_05770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagella synthesis chaperone protein FlgN YP_008612958.1 1222658 R 1064551 CDS YP_008612959.1 549479045 complement(1223085..1223378) 1 NC_022525.1 regulates the flagellar specific sigma28 transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-sigma28 factor FlgM 1223378 1064551001152 IA1_05775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 anti-sigma28 factor FlgM YP_008612959.1 1223085 R 1064551 CDS YP_008612960.1 549479046 complement(1223470..1224129) 1 NC_022525.1 required for the assembly of the flagellar basal body P-ring; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body P-ring biosynthesis protein FlgA 1224129 flgA 1064551001153 flgA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar basal body P-ring biosynthesis protein FlgA YP_008612960.1 1223470 R 1064551 CDS YP_008612961.1 549479047 1224286..1224702 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FlgB 1224702 1064551001154 IA1_05785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar biosynthesis protein FlgB YP_008612961.1 1224286 D 1064551 CDS YP_008612962.1 549479048 1224706..1225110 1 NC_022525.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgC 1225110 flgC 1064551001155 flgC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar basal body rod protein FlgC YP_008612962.1 1224706 D 1064551 CDS YP_008612963.1 549479049 1225122..1225820 1 NC_022525.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod modification protein 1225820 flgD 1064551001156 flgD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar basal body rod modification protein YP_008612963.1 1225122 D 1064551 CDS YP_008612964.1 549479050 1225847..1227058 1 NC_022525.1 the hook connects flagellar basal body to the flagellar filament; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook protein FlgE 1227058 flgE 1064551001157 flgE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar hook protein FlgE YP_008612964.1 1225847 D 1064551 CDS YP_008612965.1 549479051 1227079..1227834 1 NC_022525.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgF 1227834 flgF 1064551001158 flgF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar basal body rod protein FlgF YP_008612965.1 1227079 D 1064551 CDS YP_008612966.1 549479052 1227848..1228630 1 NC_022525.1 makes up the distal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgG 1228630 flgG 1064551001159 flgG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar basal body rod protein FlgG YP_008612966.1 1227848 D 1064551 CDS YP_008612967.1 549479053 1228684..1229382 1 NC_022525.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body L-ring protein 1229382 flgH 1064551001160 flgH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar basal body L-ring protein YP_008612967.1 1228684 D 1064551 CDS YP_008612968.1 549479054 1229394..1230491 1 NC_022525.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body P-ring protein 1230491 flgI 1064551001161 flgI Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar basal body P-ring protein YP_008612968.1 1229394 D 1064551 CDS YP_008612969.1 549479055 1230491..1231441 1 NC_022525.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar rod assembly protein FlgJ 1231441 flgJ 1064551001162 flgJ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar rod assembly protein FlgJ YP_008612969.1 1230491 D 1064551 CDS YP_008612970.1 549479056 1231506..1233167 1 NC_022525.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-associated protein FlgK 1233167 flgK 1064551001163 flgK Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar hook-associated protein FlgK YP_008612970.1 1231506 D 1064551 CDS YP_008612971.1 549479057 1233182..1234135 1 NC_022525.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-associated protein FlgL 1234135 flgL 1064551001164 flgL Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar hook-associated protein FlgL YP_008612971.1 1233182 D 1064551 CDS YP_008612972.1 549479058 complement(1234392..1237595) 1 NC_022525.1 bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease E 1237595 rne 1064551001165 rne Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonuclease E YP_008612972.1 1234392 R 1064551 CDS YP_008612973.1 549479059 1238169..1239128 1 NC_022525.1 catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridylate synthase C 1239128 1064551001166 IA1_05845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 23S rRNA pseudouridylate synthase C YP_008612973.1 1238169 D 1064551 CDS YP_008612974.1 549481875 1239266..1240027 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1240027 1064551001167 IA1_05850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612974.1 1239266 D 1064551 CDS YP_008612975.1 549481876 1240233..1240457 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1240457 1064551001168 IA1_05855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612975.1 1240233 D 1064551 CDS YP_008612976.1 549479060 complement(1240529..1241113) 1 NC_022525.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; Maf 1241113 1064551001169 IA1_05860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Maf YP_008612976.1 1240529 R 1064551 CDS YP_008612977.1 549481877 1241311..1241832 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1241832 1064551001170 IA1_05865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612977.1 1241311 D 1064551 CDS YP_008612978.1 549481878 1241884..1242057 1 NC_022525.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 50S ribosomal protein L32 1242057 rpmF 1064551001171 rpmF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L32 YP_008612978.1 1241884 D 1064551 CDS YP_008612979.1 549481879 1242221..1243270 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphate acyltransferase 1243270 1064551001172 IA1_05875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphate acyltransferase YP_008612979.1 1242221 D 1064551 CDS YP_008612980.1 549479061 1243351..1244304 1 NC_022525.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacyl-ACP synthase 1244304 1064551001173 IA1_05880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-oxoacyl-ACP synthase YP_008612980.1 1243351 D 1064551 CDS YP_008612981.1 549479062 1244320..1245249 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; malonyl CoA-ACP transacylase 1245249 1064551001174 IA1_05885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 malonyl CoA-ACP transacylase YP_008612981.1 1244320 D 1064551 CDS YP_008612982.1 549479063 1245262..1245996 1 NC_022525.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-ketoacyl-ACP reductase 1245996 fabG 1064551001175 fabG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-ketoacyl-ACP reductase YP_008612982.1 1245262 D 1064551 CDS YP_008612983.1 549479064 1246152..1246388 1 NC_022525.1 carries the fatty acid chain in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl carrier protein 1246388 acpP 1064551001176 acpP Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyl carrier protein YP_008612983.1 1246152 D 1064551 CDS YP_008612984.1 549479065 1246474..1247715 1 NC_022525.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacyl-ACP synthase 1247715 1064551001177 IA1_05900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-oxoacyl-ACP synthase YP_008612984.1 1246474 D 1064551 CDS YP_008612985.1 549479066 1247839..1248648 1 NC_022525.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-amino-4-deoxychorismate lyase 1248648 1064551001178 IA1_05905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-amino-4-deoxychorismate lyase YP_008612985.1 1247839 D 1064551 CDS YP_008612986.1 549481880 1248651..1249673 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aminodeoxychorismate lyase 1249673 1064551001179 IA1_05910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aminodeoxychorismate lyase YP_008612986.1 1248651 D 1064551 CDS YP_008612987.1 549479067 1249663..1250304 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidylate kinase 1250304 1064551001180 IA1_05915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thymidylate kinase YP_008612987.1 1249663 D 1064551 CDS YP_008612988.1 549479068 1250301..1251305 1 NC_022525.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit delta' 1251305 1064551001181 IA1_05920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA polymerase III subunit delta' YP_008612988.1 1250301 D 1064551 CDS YP_008612989.1 549479069 1251316..1252113 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNAse 1252113 1064551001182 IA1_05925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNAse YP_008612989.1 1251316 D 1064551 CDS YP_008612990.1 549479070 1252408..1253841 1 NC_022525.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS glucose transporter subunit IIBC 1253841 1064551001183 IA1_05930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS glucose transporter subunit IIBC YP_008612990.1 1252408 D 1064551 CDS YP_008612991.1 549479071 complement(1253926..1256100) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ferric-rhodotorulic acid outer membrane transporter 1256100 1064551001184 IA1_05935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferric-rhodotorulic acid outer membrane transporter YP_008612991.1 1253926 R 1064551 CDS YP_008612992.1 549479072 1256423..1256800 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; purine nucleoside phosphoramidase 1256800 1064551001185 IA1_05940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 purine nucleoside phosphoramidase YP_008612992.1 1256423 D 1064551 CDS YP_008612993.1 549479073 1256803..1257177 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1257177 1064551001186 IA1_05945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008612993.1 1256803 D 1064551 CDS YP_008612994.1 549479074 1257191..1257829 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein activator LpoB 1257829 1064551001187 IA1_05950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 penicillin-binding protein activator LpoB YP_008612994.1 1257191 D 1064551 CDS YP_008612995.1 549479075 1257810..1258634 1 NC_022525.1 catalyzes the phosphorylation of thiamine to thiamine phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine kinase 1258634 thiK 1064551001188 thiK Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiamine kinase YP_008612995.1 1257810 D 1064551 CDS YP_008612996.1 549479076 1258645..1259670 1 NC_022525.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-hexosaminidase 1259670 1064551001189 IA1_05960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 beta-hexosaminidase YP_008612996.1 1258645 D 1064551 CDS YP_008612997.1 549481881 1259695..1260237 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1260237 1064551001190 IA1_05965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612997.1 1259695 D 1064551 CDS YP_008612998.1 549479077 1260492..1261796 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase 1261796 1064551001191 IA1_05970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH dehydrogenase YP_008612998.1 1260492 D 1064551 CDS YP_008612999.1 549479078 1261975..1262514 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1262514 1064551001192 IA1_05975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008612999.1 1261975 D 1064551 CDS YP_008613000.1 549479079 complement(1262589..1263224) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator 1263224 1064551001193 IA1_05980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 TetR family transcriptional regulator YP_008613000.1 1262589 R 1064551 CDS YP_008613001.1 549479080 1263466..1263723 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multiple stress resistance protein BhsA 1263723 1064551001194 IA1_05985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multiple stress resistance protein BhsA YP_008613001.1 1263466 D 1064551 CDS YP_008613002.1 549479081 complement(1263820..1264785) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptigoglycan-binding protein LysM 1264785 1064551001195 IA1_05990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptigoglycan-binding protein LysM YP_008613002.1 1263820 R 1064551 CDS YP_008613003.1 549479082 complement(1264933..1268379) 1 NC_022525.1 catalyzes branch migration in Holliday junction intermediates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase RecG 1268379 1064551001196 IA1_05995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-dependent DNA helicase RecG YP_008613003.1 1264933 R 1064551 CDS YP_008613004.1 549479083 1268717..1269916 1 NC_022525.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1269916 1064551001197 IA1_06000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008613004.1 1268717 D 1064551 CDS YP_008613005.1 549479084 1269909..1270610 1 NC_022525.1 ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsE 1270610 1064551001198 IA1_06005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsE YP_008613005.1 1269909 D 1064551 CDS YP_008613006.1 549479085 1270610..1271854 1 NC_022525.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1271854 1064551001199 IA1_06010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008613006.1 1270610 D 1064551 CDS YP_008613007.1 549479086 1271883..1272794 1 NC_022525.1 catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyl-D-glucosamine kinase 1272794 1064551001200 IA1_06015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetyl-D-glucosamine kinase YP_008613007.1 1271883 D 1064551 CDS YP_008613008.1 549479087 1272813..1273634 1 NC_022525.1 Modulates the activities of several enzymes which are inactive in their acetylated form; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent deacetylase 1273634 1064551001201 IA1_06020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NAD-dependent deacetylase YP_008613008.1 1272813 D 1064551 CDS YP_008613009.1 549479088 complement(1273716..1274762) 1 NC_022525.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter substrate-binding protein 1274762 potD 1064551001202 potD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 putrescine/spermidine ABC transporter substrate-binding protein YP_008613009.1 1273716 R 1064551 CDS YP_008613010.1 549479089 complement(1274787..1275566) 1 NC_022525.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease 1275566 potC 1064551001203 potC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 putrescine/spermidine ABC transporter permease YP_008613010.1 1274787 R 1064551 CDS YP_008613011.1 549481882 complement(1275669..1275791) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1275791 1064551001204 IA1_06035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613011.1 1275669 R 1064551 CDS YP_008613012.1 549479090 complement(1275882..1276892) 1 NC_022525.1 translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isoprenoid addition of protein geranylgeranyl transferase I; also modified by S-acylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; effector protein SifA 1276892 sifA 1064551001205 sifA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 effector protein SifA YP_008613012.1 1275882 R 1064551 CDS YP_008613013.1 549479091 complement(1277221..1278084) 1 NC_022525.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease 1278084 potB 1064551001206 potB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 putrescine/spermidine ABC transporter permease YP_008613013.1 1277221 R 1064551 CDS YP_008613014.1 549479092 complement(1278068..1279204) 1 NC_022525.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter ATPase 1279204 potA 1064551001207 potA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 putrescine/spermidine ABC transporter ATPase YP_008613014.1 1278068 R 1064551 CDS YP_008613015.1 549479093 1279455..1280684 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase T 1280684 1064551001208 IA1_06055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidase T YP_008613015.1 1279455 D 1064551 CDS YP_008613016.1 549481883 1280688..1282022 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1282022 1064551001209 IA1_06060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613016.1 1280688 D 1064551 CDS YP_008613017.1 549479094 complement(1282062..1283183) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1283183 1064551001210 IA1_06065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613017.1 1282062 R 1064551 CDS YP_008613018.1 549479095 complement(1283264..1284727) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein PhoQ 1284727 1064551001211 IA1_06070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensor protein PhoQ YP_008613018.1 1283264 R 1064551 CDS YP_008613019.1 549479096 complement(1284727..1285401) 1 NC_022525.1 response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; PhoP family transcriptional regulator 1285401 1064551001212 IA1_06075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PhoP family transcriptional regulator YP_008613019.1 1284727 R 1064551 CDS YP_008613020.1 549479097 complement(1285525..1286895) 1 NC_022525.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylosuccinate lyase 1286895 1064551001213 IA1_06080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adenylosuccinate lyase YP_008613020.1 1285525 R 1064551 CDS YP_008613021.1 549479098 complement(1286899..1287546) 1 NC_022525.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysogenization regulator 1287546 1064551001214 IA1_06085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lysogenization regulator YP_008613021.1 1286899 R 1064551 CDS YP_008613022.1 549479099 complement(1287627..1288733) 1 NC_022525.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiouridylase 1288733 mnmA 1064551001215 mnmA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiouridylase YP_008613022.1 1287627 R 1064551 CDS YP_008613023.1 549479100 complement(1288787..1289248) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatase 1289248 1064551001216 IA1_06095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphatase YP_008613023.1 1288787 R 1064551 CDS YP_008613024.1 549479101 complement(1289260..1289589) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1289589 1064551001217 IA1_06100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613024.1 1289260 R 1064551 CDS YP_008613025.1 549481884 complement(1289586..1290221) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1290221 1064551001218 IA1_06105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613025.1 1289586 R 1064551 CDS YP_008613026.1 549479102 1290423..1291673 1 NC_022525.1 Converts isocitrate to alpha ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate dehydrogenase 1291673 1064551001219 IA1_06110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 isocitrate dehydrogenase YP_008613026.1 1290423 D 1064551 CDS YP_008613027.1 549479103 1292121..1293245 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1293245 1064551001220 IA1_06115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613027.1 1292121 D 1064551 CDS YP_008613028.1 549481885 complement(1293702..1293908) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1293908 1064551001221 IA1_06120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613028.1 1293702 R 1064551 CDS YP_008613029.1 549481886 complement(1294230..1295018) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1295018 1064551001222 IA1_06125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613029.1 1294230 R 1064551 CDS YP_008613030.1 549479104 complement(1295508..1295747) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; virulence protein MsgA 1295747 1064551001223 IA1_06130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 virulence protein MsgA YP_008613030.1 1295508 R 1064551 CDS YP_008613031.1 549481887 complement(1295938..1296213) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1296213 1064551001224 IA1_06135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613031.1 1295938 R 1064551 CDS YP_008613032.1 549479105 complement(1296874..1297074) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA chaperone/anti-terminator 1297074 1064551001225 IA1_06140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA chaperone/anti-terminator YP_008613032.1 1296874 R 1064551 CDS YP_008613033.1 549479106 1298293..1298850 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1298850 1064551001226 IA1_06145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613033.1 1298293 D 1064551 CDS YP_008613034.1 549479107 complement(1300072..1300416) 1 NC_022525.1 PliC; periplasmic lysozyme inhibitor of c-type lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme inhibitor 1300416 1064551001228 IA1_06155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lysozyme inhibitor YP_008613034.1 1300072 R 1064551 CDS YP_008613035.1 549481888 1300794..1300919 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1300919 1064551001229 IA1_06160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613035.1 1300794 D 1064551 CDS YP_008613036.1 549481889 complement(1301051..1301224) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1301224 1064551001230 IA1_06165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613036.1 1301051 R 1064551 CDS YP_008613037.1 549479108 1301544..1302011 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shick protein 1302011 1064551001231 IA1_06170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heat shick protein YP_008613037.1 1301544 D 1064551 CDS YP_008613038.1 549479109 1302350..1303393 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1303393 1064551001232 IA1_06175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613038.1 1302350 D 1064551 CDS YP_008613039.1 549479110 complement(1303476..1304006) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1304006 1064551001233 IA1_06180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase YP_008613039.1 1303476 R 1064551 CDS YP_008613040.1 549481890 complement(1304155..1304469) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lipoprotein 1304469 1064551001234 IA1_06185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein YP_008613040.1 1304155 R 1064551 CDS YP_008613041.1 549479111 1305150..1306784 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel ABC transporter substrate-binding protein 1306784 1064551001235 IA1_06190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nickel ABC transporter substrate-binding protein YP_008613041.1 1305150 D 1064551 CDS YP_008613042.1 549479112 1306784..1307758 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1307758 1064551001236 IA1_06195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter permease YP_008613042.1 1306784 D 1064551 CDS YP_008613043.1 549479113 1307748..1308560 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1308560 1064551001237 IA1_06200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter permease YP_008613043.1 1307748 D 1064551 CDS YP_008613044.1 549479114 1308554..1309351 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein 1309351 1064551001238 IA1_06205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter ATP-binding protein YP_008613044.1 1308554 D 1064551 CDS YP_008613045.1 549479115 1309345..1309935 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein 1309935 1064551001239 IA1_06210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter ATP-binding protein YP_008613045.1 1309345 D 1064551 CDS YP_008613046.1 549479116 complement(1310017..1311150) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MscS mechanosensitive ion channel 1311150 1064551001240 IA1_06215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MscS mechanosensitive ion channel YP_008613046.1 1310017 R 1064551 CDS YP_008613047.1 549479117 1311344..1311670 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin 1311670 1064551001241 IA1_06220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferredoxin YP_008613047.1 1311344 D 1064551 CDS YP_008613048.1 549479118 1311864..1312514 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc/cadmium-binding protein 1312514 1064551001243 IA1_06230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 zinc/cadmium-binding protein YP_008613048.1 1311864 D 1064551 CDS YP_008613049.1 549479119 1312623..1313411 1 NC_022525.1 streptomycin 3'-adenyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoglycoside resistance protein 1313411 1064551001244 IA1_06235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aminoglycoside resistance protein YP_008613049.1 1312623 D 1064551 CDS YP_008613050.1 549479120 1313502..1314149 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 1314149 1064551001245 IA1_06240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 regulatory protein YP_008613050.1 1313502 D 1064551 CDS YP_008613051.1 549479121 1314218..1315066 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1315066 1064551001246 IA1_06245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613051.1 1314218 D 1064551 CDS YP_008613052.1 549479122 complement(1315321..1315569) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1315569 1064551001247 IA1_06250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613052.1 1315321 R 1064551 CDS YP_008613053.1 549479123 1315898..1316443 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate mutase 1316443 1064551001248 IA1_06255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chorismate mutase YP_008613053.1 1315898 D 1064551 CDS YP_008613054.1 549481891 1316640..1317278 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; leucine export protein LeuE 1317278 1064551001249 IA1_06260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 leucine export protein LeuE YP_008613054.1 1316640 D 1064551 CDS YP_008613055.1 549479124 1317451..1317813 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tellurite resistance protein B 1317813 1064551001250 IA1_06265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tellurite resistance protein B YP_008613055.1 1317451 D 1064551 CDS YP_008613056.1 549479125 1317816..1317998 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1317998 1064551001251 IA1_06270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613056.1 1317816 D 1064551 CDS YP_008613057.1 549479126 1318228..1318869 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nitric oxide reductase 1318869 1064551001252 IA1_06275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitric oxide reductase YP_008613057.1 1318228 D 1064551 CDS YP_008613058.1 549479127 1319183..1319431 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1319431 1064551001253 IA1_06280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613058.1 1319183 D 1064551 CDS YP_008613059.1 549479128 1319864..1320115 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1320115 1064551001254 IA1_06285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613059.1 1319864 D 1064551 CDS YP_008613060.1 549479129 1320184..1320495 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1320495 1064551001255 IA1_06290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613060.1 1320184 D 1064551 CDS YP_008613061.1 549481892 complement(1320481..1320828) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1320828 1064551001256 IA1_06295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613061.1 1320481 R 1064551 CDS YP_008613062.1 549481893 complement(1320947..1322131) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1322131 1064551001257 IA1_06300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613062.1 1320947 R 1064551 CDS YP_008613063.1 549479130 1322232..1323026 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 1323026 1064551001258 IA1_06305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 AraC family transcriptional regulator YP_008613063.1 1322232 D 1064551 CDS YP_008613064.1 549479131 complement(1323006..1323452) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1323452 1064551001259 IA1_06310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613064.1 1323006 R 1064551 CDS YP_008613065.1 549481894 1323658..1323765 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1323765 1064551001260 IA1_06315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613065.1 1323658 D 1064551 CDS YP_008613066.1 549481895 complement(1323762..1324289) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1324289 1064551001261 IA1_06320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613066.1 1323762 R 1064551 CDS YP_008613067.1 549479132 complement(1324330..1325823) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cylase 1325823 1064551001262 IA1_06325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diguanylate cylase YP_008613067.1 1324330 R 1064551 CDS YP_008613068.1 549479133 complement(1326464..1327750) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1327750 1064551001263 IA1_06330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613068.1 1326464 R 1064551 CDS YP_008613069.1 549481896 complement(1327873..1329837) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1329837 1064551001264 IA1_06335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613069.1 1327873 R 1064551 CDS YP_008613070.1 549479134 1330235..1330981 1 NC_022525.1 scaffolding protein for the murein polymerase MrcB and the lytic transglycosylase MltA; Derived by automated computational analysis using gene prediction method: Protein Homology.; MltA-interacting protein MipA 1330981 1064551001265 IA1_06340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MltA-interacting protein MipA YP_008613070.1 1330235 D 1064551 CDS YP_008613071.1 549479135 1331271..1332467 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Chondro-6-sulfatase 1332467 1064551001266 IA1_06345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Chondro-6-sulfatase YP_008613071.1 1331271 D 1064551 CDS YP_008613072.1 549481897 1332564..1333421 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1333421 1064551001267 IA1_06350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613072.1 1332564 D 1064551 CDS YP_008613073.1 549479136 complement(1333520..1334404) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-6-phosphate 1-epimerase 1334404 1064551001268 IA1_06355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucose-6-phosphate 1-epimerase YP_008613073.1 1333520 R 1064551 CDS YP_008613074.1 549481898 complement(1334404..1334580) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1334580 1064551001269 IA1_06360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613074.1 1334404 R 1064551 CDS YP_008613075.1 549479137 complement(1334739..1335734) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glyceraldehyde-3-phosphate dehydrogenase 1335734 1064551001270 IA1_06365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glyceraldehyde-3-phosphate dehydrogenase YP_008613075.1 1334739 R 1064551 CDS YP_008613076.1 549481899 1336076..1336489 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; methionine sulfoxide reductase B 1336489 1064551001271 IA1_06370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methionine sulfoxide reductase B YP_008613076.1 1336076 D 1064551 CDS YP_008613077.1 549479138 1336531..1336809 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1336809 1064551001272 IA1_06375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613077.1 1336531 D 1064551 CDS YP_008613078.1 549479139 complement(1337161..1337817) 1 NC_022525.1 catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinamidase/pyrazinamidase 1337817 1064551001273 IA1_06380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nicotinamidase/pyrazinamidase YP_008613078.1 1337161 R 1064551 CDS YP_008613079.1 549479140 complement(1337844..1338860) 1 NC_022525.1 converts asparagine to aspartate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoplasmic asparaginase I 1338860 ansA 1064551001274 ansA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytoplasmic asparaginase I YP_008613079.1 1337844 R 1064551 CDS YP_008613080.1 549479141 complement(1338956..1340812) 1 NC_022525.1 SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 1340812 1064551001275 IA1_06390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protease YP_008613080.1 1338956 R 1064551 CDS YP_008613081.1 549479142 1340986..1341537 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 1341537 1064551001276 IA1_06395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase YP_008613081.1 1340986 D 1064551 CDS YP_008613082.1 549479143 1341655..1342698 1 NC_022525.1 catalyzes the formation of selenophosphate from selenide and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; selenophosphate synthetase 1342698 1064551001277 IA1_06400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 selenophosphate synthetase YP_008613082.1 1341655 D 1064551 CDS YP_008613083.1 549479144 1342703..1344652 1 NC_022525.1 decatenates replicating daughter chromosomes; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase III 1344652 1064551001278 IA1_06405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA topoisomerase III YP_008613083.1 1342703 D 1064551 CDS YP_008613084.1 549479145 complement(1344682..1346025) 1 NC_022525.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate dehydrogenase 1346025 1064551001279 IA1_06410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamate dehydrogenase YP_008613084.1 1344682 R 1064551 CDS YP_008613085.1 549479146 1346264..1346539 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1346539 1064551001280 IA1_06415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613085.1 1346264 D 1064551 CDS YP_008613086.1 549479147 complement(1346499..1346915) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 1346915 1064551001281 IA1_06420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YP_008613086.1 1346499 R 1064551 CDS YP_008613087.1 549479148 complement(1346988..1347794) 1 NC_022525.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease III 1347794 1064551001282 IA1_06425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exonuclease III YP_008613087.1 1346988 R 1064551 CDS YP_008613088.1 549479149 1348240..1349466 1 NC_022525.1 catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetylornithine aminotransferase 1349466 1064551001283 IA1_06430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetylornithine aminotransferase YP_008613088.1 1348240 D 1064551 CDS YP_008613089.1 549479150 1349457..1350491 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine succinyltransferase 1350491 1064551001284 IA1_06435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginine succinyltransferase YP_008613089.1 1349457 D 1064551 CDS YP_008613090.1 549479151 1350488..1351966 1 NC_022525.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinylglutamate-semialdehyde dehydrogenase 1351966 astD 1064551001285 astD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 succinylglutamate-semialdehyde dehydrogenase YP_008613090.1 1350488 D 1064551 CDS YP_008613091.1 549481900 1351963..1353306 1 NC_022525.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; succinylarginine dihydrolase 1353306 1064551001286 IA1_06445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 succinylarginine dihydrolase YP_008613091.1 1351963 D 1064551 CDS YP_008613092.1 549479152 1353299..1354267 1 NC_022525.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinylglutamate desuccinylase 1354267 1064551001287 IA1_06450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 succinylglutamate desuccinylase YP_008613092.1 1353299 D 1064551 CDS YP_008613093.1 549479153 1354603..1355088 1 NC_022525.1 periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1355088 1064551001288 IA1_06455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613093.1 1354603 D 1064551 CDS YP_008613094.1 549479154 complement(1355163..1356071) 1 NC_022525.1 3' incision activity; acts with UvrC; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotide excision repair endonuclease 1356071 1064551001289 IA1_06460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleotide excision repair endonuclease YP_008613094.1 1355163 R 1064551 CDS YP_008613095.1 549479155 complement(1356165..1356992) 1 NC_022525.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD synthetase 1356992 nadE 1064551001290 nadE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NAD synthetase YP_008613095.1 1356165 R 1064551 CDS YP_008613096.1 549479156 1357210..1357551 1 NC_022525.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1357551 1064551001291 IA1_06470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613096.1 1357210 D 1064551 CDS YP_008613097.1 549479157 1357852..1358172 1 NC_022525.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N'-diacetylchitobiose transporter subunit IIB 1358172 1064551001292 IA1_06475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS N'-diacetylchitobiose transporter subunit IIB YP_008613097.1 1357852 D 1064551 CDS YP_008613098.1 549479158 1358255..1359613 1 NC_022525.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N'-diacetylchitobiose transporter subunit IIC 1359613 1064551001293 IA1_06480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS N'-diacetylchitobiose transporter subunit IIC YP_008613098.1 1358255 D 1064551 CDS YP_008613099.1 549479159 1359664..1360011 1 NC_022525.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N'-diacetylchitobiose transporter subunit IIA 1360011 1064551001294 IA1_06485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS N'-diacetylchitobiose transporter subunit IIA YP_008613099.1 1359664 D 1064551 CDS YP_008613100.1 549479160 1360022..1360864 1 NC_022525.1 represses the celABCDF-ydjC operon involved in carbon uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1360864 1064551001295 IA1_06490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613100.1 1360022 D 1064551 CDS YP_008613101.1 549479161 1360989..1362344 1 NC_022525.1 catalyzes the fromation of N-acetyl-D-glucosamine and N-acetyl-D-glucosamine-6-phosphate from diacetylchitobiose-6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; diacetylchitobiose-6-phosphate hydrolase 1362344 1064551001296 IA1_06495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diacetylchitobiose-6-phosphate hydrolase YP_008613101.1 1360989 D 1064551 CDS YP_008613102.1 549479162 1362357..1363115 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1363115 1064551001297 IA1_06500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613102.1 1362357 D 1064551 CDS YP_008613103.1 549479163 complement(1363159..1365411) 1 NC_022525.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroperoxidase II 1365411 katE 1064551001298 katE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydroperoxidase II YP_008613103.1 1363159 R 1064551 CDS YP_008613104.1 549479164 1365628..1365870 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division modulator 1365870 1064551001299 IA1_06510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division modulator YP_008613104.1 1365628 D 1064551 CDS YP_008613105.1 549479165 complement(1365972..1367363) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; L-cystine transporter tcyP 1367363 1064551001300 IA1_06515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-cystine transporter tcyP YP_008613105.1 1365972 R 1064551 CDS YP_008613106.1 549479166 complement(1367500..1368099) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1368099 1064551001301 IA1_06520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613106.1 1367500 R 1064551 CDS YP_008613107.1 549479167 complement(1368237..1368905) 1 NC_022525.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-deoxyglucose-6-phosphatase 1368905 1064551001302 IA1_06525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-deoxyglucose-6-phosphatase YP_008613107.1 1368237 R 1064551 CDS YP_008613108.1 549481901 1369054..1369590 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1369590 1064551001303 IA1_06530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613108.1 1369054 D 1064551 CDS YP_008613109.1 549479168 complement(1369633..1370493) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1370493 1064551001304 IA1_06535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613109.1 1369633 R 1064551 CDS YP_008613110.1 549479169 complement(1370600..1370890) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1370890 1064551001305 IA1_06540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613110.1 1370600 R 1064551 CDS YP_008613111.1 549479170 complement(1370987..1371919) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphofructokinase 1371919 1064551001306 IA1_06545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 6-phosphofructokinase YP_008613111.1 1370987 R 1064551 CDS YP_008613112.1 549479171 1372208..1372966 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1372966 1064551001307 IA1_06550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613112.1 1372208 D 1064551 CDS YP_008613113.1 549479172 complement(1373015..1373974) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1373974 1064551001308 IA1_06555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613113.1 1373015 R 1064551 CDS YP_008613114.1 549481902 1374117..1374431 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1374431 1064551001309 IA1_06560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613114.1 1374117 D 1064551 CDS YP_008613115.1 549481903 1374428..1375282 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; endonuclease 1375282 1064551001310 IA1_06565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endonuclease YP_008613115.1 1374428 D 1064551 CDS YP_008613116.1 549479173 1375542..1377470 1 NC_022525.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); Derived by automated computational analysis using gene prediction method: Protein Homology.; threonyl-tRNA synthetase 1377470 thrS 1064551001311 thrS Salmonella enterica subsp. enterica serovar Thompson str. RM6836 threonyl-tRNA synthetase YP_008613116.1 1375542 D 1064551 CDS YP_008613117.1 549481904 1377582..1378016 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; translation initiation factor IF-3 1378016 1064551001312 IA1_06575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 translation initiation factor IF-3 YP_008613117.1 1377582 D 1064551 CDS YP_008613118.1 549479174 1378112..1378309 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L35 1378309 1064551001313 IA1_06580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L35 YP_008613118.1 1378112 D 1064551 CDS YP_008613119.1 549479175 1378360..1378716 1 NC_022525.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L20 1378716 rplT 1064551001314 rplT Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L20 YP_008613119.1 1378360 D 1064551 CDS YP_008613120.1 549479176 1379018..1380001 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylalanyl-tRNA synthetase 1380001 1064551001315 IA1_06590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phenylalanyl-tRNA synthetase YP_008613120.1 1379018 D 1064551 CDS YP_008613121.1 549479177 1380017..1382404 1 NC_022525.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylalanyl-tRNA synthetase 1382404 pheT 1064551001316 pheT Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phenylalanyl-tRNA synthetase YP_008613121.1 1380017 D 1064551 CDS YP_008613122.1 549479178 1382409..1382708 1 NC_022525.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; Derived by automated computational analysis using gene prediction method: Protein Homology.; integration host factor subunit alpha 1382708 ihfA 1064551001317 ihfA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 integration host factor subunit alpha YP_008613122.1 1382409 D 1064551 CDS YP_008613123.1 549479179 1382911..1383891 1 NC_022525.1 with BtuD and BtuF transports vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; vtamin B12-transporter permease 1383891 1064551001318 IA1_06605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 vtamin B12-transporter permease YP_008613123.1 1382911 D 1064551 CDS YP_008613124.1 549479180 1383983..1384534 1 NC_022525.1 similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione peroxidase 1384534 btuE 1064551001319 btuE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathione peroxidase YP_008613124.1 1383983 D 1064551 CDS YP_008613125.1 549479181 1384534..1385283 1 NC_022525.1 ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; vitamin B12-transporter ATPase 1385283 1064551001320 IA1_06615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 vitamin B12-transporter ATPase YP_008613125.1 1384534 D 1064551 CDS YP_008613126.1 549479182 1385360..1385824 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase 1385824 1064551001321 IA1_06620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endopeptidase YP_008613126.1 1385360 D 1064551 CDS YP_008613127.1 549479183 1386138..1386848 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP regulator CdgR 1386848 1064551001322 IA1_06625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cyclic di-GMP regulator CdgR YP_008613127.1 1386138 D 1064551 CDS YP_008613128.1 549479184 1386910..1388352 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1388352 1064551001323 IA1_06630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613128.1 1386910 D 1064551 CDS YP_008613129.1 549479185 complement(1388388..1388579) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1388579 1064551001324 IA1_06635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613129.1 1388388 R 1064551 CDS YP_008613130.1 549479186 complement(1388736..1389782) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-2-dehydro-3-deoxyheptonate aldolase 1389782 1064551001325 IA1_06640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phospho-2-dehydro-3-deoxyheptonate aldolase YP_008613130.1 1388736 R 1064551 CDS YP_008613131.1 549479187 complement(1389938..1390771) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PEP synthetase regulatory protein 1390771 1064551001326 IA1_06645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PEP synthetase regulatory protein YP_008613131.1 1389938 R 1064551 CDS YP_008613132.1 549481905 complement(1390948..1391061) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1391061 1064551001327 IA1_06650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613132.1 1390948 R 1064551 CDS YP_008613133.1 549479188 1391108..1393486 1 NC_022525.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate synthase 1393486 1064551001328 IA1_06655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoenolpyruvate synthase YP_008613133.1 1391108 D 1064551 CDS YP_008613134.1 549479189 complement(1393528..1395168) 1 NC_022525.1 acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; short chain acyl-CoA synthetase 1395168 1064551001329 IA1_06660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 short chain acyl-CoA synthetase YP_008613134.1 1393528 R 1064551 CDS YP_008613135.1 549479190 complement(1395406..1395699) 1 NC_022525.1 necessary for anaerobic carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin FixX 1395699 1064551001330 IA1_06665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferredoxin FixX YP_008613135.1 1395406 R 1064551 CDS YP_008613136.1 549479191 complement(1395696..1396982) 1 NC_022525.1 FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase FixC 1396982 1064551001331 IA1_06670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase FixC YP_008613136.1 1395696 R 1064551 CDS YP_008613137.1 549479192 complement(1397039..1397974) 1 NC_022525.1 involved in electron transfer during carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein subunit alpha 1397974 fixB 1064551001332 fixB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 electron transfer flavoprotein subunit alpha YP_008613137.1 1397039 R 1064551 CDS YP_008613138.1 549479193 complement(1397996..1398760) 1 NC_022525.1 required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein FixB 1398760 1064551001333 IA1_06680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 electron transfer flavoprotein FixB YP_008613138.1 1397996 R 1064551 CDS YP_008613139.1 549479194 1399223..1400113 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 1400113 1064551001334 IA1_06685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 AraC family transcriptional regulator YP_008613139.1 1399223 D 1064551 CDS YP_008613140.1 549479195 complement(1400189..1401340) 1 NC_022525.1 catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; crotonobetainyl-CoA dehydrogenase 1401340 1064551001335 IA1_06690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 crotonobetainyl-CoA dehydrogenase YP_008613140.1 1400189 R 1064551 CDS YP_008613141.1 549479196 complement(1401354..1402949) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1402949 1064551001336 IA1_06695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613141.1 1401354 R 1064551 CDS YP_008613142.1 549479197 complement(1403103..1403861) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-dehydroquinate dehydratase 1403861 1064551001337 IA1_06700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-dehydroquinate dehydratase YP_008613142.1 1403103 R 1064551 CDS YP_008613143.1 549479198 complement(1403906..1404772) 1 NC_022525.1 YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate 5-dehydrogenase 1404772 1064551001338 IA1_06705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 shikimate 5-dehydrogenase YP_008613143.1 1403906 R 1064551 CDS YP_008613144.1 549481906 complement(1404839..1406074) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transporter 1406074 1064551001339 IA1_06710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008613144.1 1404839 R 1064551 CDS YP_008613145.1 549479199 complement(1406438..1407649) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1407649 1064551001340 IA1_06715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008613145.1 1406438 R 1064551 CDS YP_008613146.1 549479200 complement(1407790..1408149) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1408149 1064551001341 IA1_06720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613146.1 1407790 R 1064551 CDS YP_008613147.1 549479201 complement(1408606..1409724) 1 NC_022525.1 YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1409724 1064551001342 IA1_06725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613147.1 1408606 R 1064551 CDS YP_008613148.1 549481907 1409989..1413045 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1413045 1064551001343 IA1_06730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613148.1 1409989 D 1064551 CDS YP_008613149.1 549479202 1413042..1413452 1 NC_022525.1 required for efficient enterobactin production; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase 1413452 1064551001344 IA1_06735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyl-CoA esterase YP_008613149.1 1413042 D 1064551 CDS YP_008613150.1 549481908 1413551..1413739 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1413739 1064551001345 IA1_06740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613150.1 1413551 D 1064551 CDS YP_008613151.1 549479203 complement(1414026..1415372) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:dicarboxylate symporter 1415372 1064551001346 IA1_06745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sodium:dicarboxylate symporter YP_008613151.1 1414026 R 1064551 CDS YP_008613152.1 549479204 1415799..1416167 1 NC_022525.1 functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster assembly scaffold protein 1416167 sufA 1064551001347 sufA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron-sulfur cluster assembly scaffold protein YP_008613152.1 1415799 D 1064551 CDS YP_008613153.1 549479205 1416176..1417663 1 NC_022525.1 with SufCD activates cysteine desulfurase SufS; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase activator complex subunit SufB 1417663 1064551001348 IA1_06755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cysteine desulfurase activator complex subunit SufB YP_008613153.1 1416176 D 1064551 CDS YP_008613154.1 549479206 1417680..1418426 1 NC_022525.1 part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase 1418426 sufC 1064551001349 sufC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cysteine desulfurase YP_008613154.1 1417680 D 1064551 CDS YP_008613155.1 549479207 1418401..1419672 1 NC_022525.1 with SufBC activates cysteine desulfurase SufS; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase activator complex subunit SufD 1419672 1064551001350 IA1_06765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cysteine desulfurase activator complex subunit SufD YP_008613155.1 1418401 D 1064551 CDS YP_008613156.1 549479208 1419669..1420889 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional cysteine desulfurase/selenocysteine lyase 1420889 1064551001351 IA1_06770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional cysteine desulfurase/selenocysteine lyase YP_008613156.1 1419669 D 1064551 CDS YP_008613157.1 549479209 1420902..1421318 1 NC_022525.1 Acts with SufS to catalyze the formation of L-alanine from L-cysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desufuration protein SufE 1421318 1064551001352 IA1_06775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cysteine desufuration protein SufE YP_008613157.1 1420902 D 1064551 CDS YP_008613158.1 549479210 1421473..1422474 1 NC_022525.1 catalyzes the formation of a meso-diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link in peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein L,D-transpeptidase 1422474 1064551001353 IA1_06780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 murein L,D-transpeptidase YP_008613158.1 1421473 D 1064551 CDS YP_008613159.1 549479211 complement(1422540..1422842) 1 NC_022525.1 major outer membrane lipoprotein; interacts with peptidoglycan to maintain the integrity of the cell envelope; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein lipoprotein 1422842 1064551001354 IA1_06785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 murein lipoprotein YP_008613159.1 1422540 R 1064551 CDS YP_008613160.1 549479212 complement(1422862..1423098) 1 NC_022525.1 major outer membrane lipoprotein; interacts with peptidoglycan to maintain the integrity of the cell envelope; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein lipoprotein 1423098 1064551001355 IA1_06790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 murein lipoprotein YP_008613160.1 1422862 R 1064551 CDS YP_008613161.1 549479213 complement(1423409..1424821) 1 NC_022525.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate kinase 1424821 1064551001356 IA1_06795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyruvate kinase YP_008613161.1 1423409 R 1064551 CDS YP_008613162.1 549479214 complement(1425223..1426566) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid permease 1426566 1064551001357 IA1_06800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid permease YP_008613162.1 1425223 R 1064551 CDS YP_008613163.1 549479215 complement(1426588..1427481) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 1427481 1064551001358 IA1_06805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrolase YP_008613163.1 1426588 R 1064551 CDS YP_008613164.1 549479216 complement(1427540..1428277) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1428277 1064551001359 IA1_06810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613164.1 1427540 R 1064551 CDS YP_008613165.1 549479217 complement(1428289..1429515) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 1429515 1064551001360 IA1_06815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 regulatory protein YP_008613165.1 1428289 R 1064551 CDS YP_008613166.1 549479218 complement(1429838..1432900) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tetrathionate reductase subunit A 1432900 1064551001361 IA1_06820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tetrathionate reductase subunit A YP_008613166.1 1429838 R 1064551 CDS YP_008613167.1 549479219 complement(1432893..1433915) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tetrathionate reductase subunit C 1433915 1064551001362 IA1_06825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tetrathionate reductase subunit C YP_008613167.1 1432893 R 1064551 CDS YP_008613168.1 549479220 complement(1433916..1434650) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; polysulfide reductase subunit B 1434650 1064551001363 IA1_06830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 polysulfide reductase subunit B YP_008613168.1 1433916 R 1064551 CDS YP_008613169.1 549479221 1434832..1436610 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine kinase 1436610 1064551001364 IA1_06835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 histidine kinase YP_008613169.1 1434832 D 1064551 CDS YP_008613170.1 549481909 1436585..1437205 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Tetrathionate response regulatory protein TtrR 1437205 1064551001365 IA1_06840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Tetrathionate response regulatory protein TtrR YP_008613170.1 1436585 D 1064551 CDS YP_008613171.1 549481910 1437303..1437515 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1437515 1064551001366 IA1_06845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613171.1 1437303 D 1064551 CDS YP_008613172.1 549479222 complement(1437611..1438570) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1438570 1064551001367 IA1_06850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613172.1 1437611 R 1064551 CDS YP_008613173.1 549479223 complement(1438742..1439470) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MerR family transcriptional regulator 1439470 1064551001368 IA1_06855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MerR family transcriptional regulator YP_008613173.1 1438742 R 1064551 CDS YP_008613174.1 549479224 complement(1439649..1440287) 1 NC_022525.1 is phosphorylated by SsrA; is involved in the expression of the virulence genes of Salmonella pathogenicity island-2; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1440287 1064551001369 IA1_06860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613174.1 1439649 R 1064551 CDS YP_008613175.1 549479225 complement(1440318..1443080) 1 NC_022525.1 phosphorylates the response regulator SsrB; is involved in the expression of the virulence genes of Salmonella pathogenicity island-2; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1443080 1064551001370 IA1_06865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613175.1 1440318 R 1064551 CDS YP_008613176.1 549481911 1443499..1443882 1 NC_022525.1 involved in macrophage infection; inhibits phagosome-lysosome fusion and cellular trafficking; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; pathogenicity island chaperone protein SpiC 1443882 spiC 1064551001371 spiC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island chaperone protein SpiC YP_008613176.1 1443499 D 1064551 CDS YP_008613177.1 549479226 1443884..1445377 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane secretin SsaC 1445377 1064551001372 IA1_06875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane secretin SsaC YP_008613177.1 1443884 D 1064551 CDS YP_008613178.1 549479227 1445358..1446569 1 NC_022525.1 Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SsaD 1446569 1064551001373 IA1_06880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein SsaD YP_008613178.1 1445358 D 1064551 CDS YP_008613179.1 549479228 1446577..1446819 1 NC_022525.1 Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; involved in the secretion of SseB; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system chaperone SsaE 1446819 1064551001374 IA1_06885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system chaperone SsaE YP_008613179.1 1446577 D 1064551 CDS YP_008613180.1 549481912 1447086..1447409 1 NC_022525.1 chaperone for SseB and SseD; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system chaperone SseA 1447409 1064551001375 IA1_06890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system chaperone SseA YP_008613180.1 1447086 D 1064551 CDS YP_008613181.1 549479229 1447416..1448006 1 NC_022525.1 necessary for the correct localization of SseC and SseD on the bacterial cell surface; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 2 effector protein SseB 1448006 1064551001376 IA1_06895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island 2 effector protein SseB YP_008613181.1 1447416 D 1064551 CDS YP_008613182.1 549479230 1448003..1448476 1 NC_022525.1 may be involved in the translocation of effector proteins into the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 2 chaperone protein SscA 1448476 1064551001377 IA1_06900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island 2 chaperone protein SscA YP_008613182.1 1448003 D 1064551 CDS YP_008613183.1 549479231 1448479..1449933 1 NC_022525.1 may be involved in the translocation of effector proteins into the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 2 effector protein SseC 1449933 1064551001378 IA1_06905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island 2 effector protein SseC YP_008613183.1 1448479 D 1064551 CDS YP_008613184.1 549479232 1449949..1450536 1 NC_022525.1 may be involved in the translocation of effector proteins into the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 2 effector protein SseD 1450536 1064551001379 IA1_06910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island 2 effector protein SseD YP_008613184.1 1449949 D 1064551 CDS YP_008613185.1 549481913 1450539..1450955 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; pathogenicity island 2 effector protein SseE 1450955 1064551001380 IA1_06915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island 2 effector protein SseE YP_008613185.1 1450539 D 1064551 CDS YP_008613186.1 549479233 1451007..1451441 1 NC_022525.1 Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; chaperone for SseF; required for the efficient replication of Salmonella in host macrophages; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system chaperone protein SscB 1451441 1064551001381 IA1_06920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system chaperone protein SscB YP_008613186.1 1451007 D 1064551 CDS YP_008613187.1 549479234 1451457..1452239 1 NC_022525.1 with SseG is involved in the aggregation of the host endosomes; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 2 effector protein SseF 1452239 1064551001382 IA1_06925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island 2 effector protein SseF YP_008613187.1 1451457 D 1064551 CDS YP_008613188.1 549481914 1452338..1452925 1 NC_022525.1 with SseF is involved in the aggregation of the host endosomes; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; pathogenicity island 2 effector protein SseG 1452925 1064551001383 IA1_06930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island 2 effector protein SseG YP_008613188.1 1452338 D 1064551 CDS YP_008613189.1 549479235 1453019..1453234 1 NC_022525.1 Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system needle protein SsaG 1453234 1064551001384 IA1_06935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system needle protein SsaG YP_008613189.1 1453019 D 1064551 CDS YP_008613190.1 549479236 1453212..1453502 1 NC_022525.1 Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SsaH 1453502 1064551001385 IA1_06940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein SsaH YP_008613190.1 1453212 D 1064551 CDS YP_008613191.1 549481915 1453499..1453762 1 NC_022525.1 Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system protein SsaI 1453762 1064551001386 IA1_06945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein SsaI YP_008613191.1 1453499 D 1064551 CDS YP_008613192.1 549479237 1453759..1454508 1 NC_022525.1 Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system lipoprotein SsaJ 1454508 1064551001387 IA1_06950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system lipoprotein SsaJ YP_008613192.1 1453759 D 1064551 CDS YP_008613193.1 549481916 1454802..1455074 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; pathogenicity island protein 1455074 1064551001388 IA1_06955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island protein YP_008613193.1 1454802 D 1064551 CDS YP_008613194.1 549479238 1455071..1455745 1 NC_022525.1 Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SsaK 1455745 1064551001389 IA1_06960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein SsaK YP_008613194.1 1455071 D 1064551 CDS YP_008613195.1 549479239 1455711..1456727 1 NC_022525.1 Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; may be involved in regulation; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SsaL 1456727 1064551001390 IA1_06965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein SsaL YP_008613195.1 1455711 D 1064551 CDS YP_008613196.1 549481917 1456785..1457153 1 NC_022525.1 Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; is involved in the secretion of translocator and effector proteins; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system protein SsaM 1457153 1064551001391 IA1_06970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein SsaM YP_008613196.1 1456785 D 1064551 CDS YP_008613197.1 549479240 1457138..1459183 1 NC_022525.1 with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; Derived by automated computational analysis using gene prediction method: Protein Homology.; secretion system apparatus protein SsaV 1459183 1064551001392 IA1_06975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 secretion system apparatus protein SsaV YP_008613197.1 1457138 D 1064551 CDS YP_008613198.1 549479241 1459173..1460474 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system ATPase 1460474 1064551001393 IA1_06980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system ATPase YP_008613198.1 1459173 D 1064551 CDS YP_008613199.1 549479242 1460477..1460854 1 NC_022525.1 Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SsaO 1460854 1064551001394 IA1_06985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein SsaO YP_008613199.1 1460477 D 1064551 CDS YP_008613200.1 549481918 1460835..1461209 1 NC_022525.1 Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system protein SsaP 1461209 1064551001395 IA1_06990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein SsaP YP_008613200.1 1460835 D 1064551 CDS YP_008613201.1 549481919 1461190..1462158 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system protein SsaQ 1462158 1064551001396 IA1_06995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein SsaQ YP_008613201.1 1461190 D 1064551 CDS YP_008613202.1 549479243 1462226..1462873 1 NC_022525.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliP 1462873 ssaR 1064551001397 ssaR Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar biosynthesis protein FliP YP_008613202.1 1462226 D 1064551 CDS YP_008613203.1 549479244 1462870..1463136 1 NC_022525.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliQ 1463136 fliQ 1064551001398 fliQ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar biosynthesis protein FliQ YP_008613203.1 1462870 D 1064551 CDS YP_008613204.1 549481920 1463137..1463916 1 NC_022525.1 Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system protein SsaT 1463916 1064551001399 IA1_07010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein SsaT YP_008613204.1 1463137 D 1064551 CDS YP_008613205.1 549481921 1463913..1464971 1 NC_022525.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; secretion system apparatus protein SsaU 1464971 1064551001400 IA1_07015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 secretion system apparatus protein SsaU YP_008613205.1 1463913 D 1064551 CDS YP_008613206.1 549479245 complement(1465444..1466817) 1 NC_022525.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 1466817 1064551001403 IA1_07030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008613206.1 1465444 R 1064551 CDS YP_008613207.1 549479246 1467034..1467675 1 NC_022525.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; Derived by automated computational analysis using gene prediction method: Protein Homology.; riboflavin synthase subunit alpha 1467675 1064551001404 IA1_07035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 riboflavin synthase subunit alpha YP_008613207.1 1467034 D 1064551 CDS YP_008613208.1 549479247 complement(1467717..1468865) 1 NC_022525.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclopropane fatty acyl phospholipid synthase 1468865 1064551001405 IA1_07040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cyclopropane fatty acyl phospholipid synthase YP_008613208.1 1467717 R 1064551 CDS YP_008613209.1 549479248 complement(1469155..1470360) 1 NC_022525.1 uncharacterized member of the major facilitator superfamily (MFS); Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1470360 1064551001406 IA1_07045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008613209.1 1469155 R 1064551 CDS YP_008613210.1 549479249 1470473..1471405 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 1471405 1064551001407 IA1_07050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcripitonal regulator YP_008613210.1 1470473 D 1064551 CDS YP_008613211.1 549479250 complement(1471402..1472427) 1 NC_022525.1 binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1472427 1064551001408 IA1_07055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613211.1 1471402 R 1064551 CDS YP_008613212.1 549481922 1472723..1472812 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1472812 1064551001409 IA1_07060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613212.1 1472723 D 1064551 CDS YP_008613213.1 549479251 complement(1472895..1473476) 1 NC_022525.1 SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; Derived by automated computational analysis using gene prediction method: Protein Homology.; superoxide dismutase 1473476 1064551001410 IA1_07065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 superoxide dismutase YP_008613213.1 1472895 R 1064551 CDS YP_008613214.1 549479252 complement(1473603..1474424) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase 1474424 1064551001411 IA1_07070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endopeptidase YP_008613214.1 1473603 R 1064551 CDS YP_008613215.1 549479253 1474759..1475106 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin 1475106 1064551001412 IA1_07075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutaredoxin YP_008613215.1 1474759 D 1064551 CDS YP_008613216.1 549479254 complement(1475184..1475831) 1 NC_022525.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease T 1475831 1064551001413 IA1_07080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonuclease T YP_008613216.1 1475184 R 1064551 CDS YP_008613217.1 549479255 complement(1475932..1476339) 1 NC_022525.1 Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; glyoxalase I 1476339 1064551001414 IA1_07085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glyoxalase I YP_008613217.1 1475932 R 1064551 CDS YP_008613218.1 549479256 complement(1476408..1477505) 1 NC_022525.1 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-ethylmaleimide reductase 1477505 1064551001415 IA1_07090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-ethylmaleimide reductase YP_008613218.1 1476408 R 1064551 CDS YP_008613219.1 549479257 complement(1477564..1478163) 1 NC_022525.1 represses nemA which is involved in degradation of N-ethylmaleimide; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1478163 1064551001416 IA1_07095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613219.1 1477564 R 1064551 CDS YP_008613220.1 549479258 1478556..1479452 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 1479452 1064551001417 IA1_07100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase YP_008613220.1 1478556 D 1064551 CDS YP_008613221.1 549479259 1479532..1480053 1 NC_022525.1 SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; Derived by automated computational analysis using gene prediction method: Protein Homology.; superoxide dismutase 1480053 1064551001418 IA1_07105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 superoxide dismutase YP_008613221.1 1479532 D 1064551 CDS YP_008613222.1 549479260 complement(1480029..1482068) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fusaric acid resistance protein 1482068 1064551001419 IA1_07110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fusaric acid resistance protein YP_008613222.1 1480029 R 1064551 CDS YP_008613223.1 549481923 complement(1482068..1482841) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1482841 1064551001420 IA1_07115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613223.1 1482068 R 1064551 CDS YP_008613224.1 549481924 complement(1482931..1483167) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1483167 1064551001421 IA1_07120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613224.1 1482931 R 1064551 CDS YP_008613225.1 549481925 1483362..1483802 1 NC_022525.1 Transcription regulator that can both activate or repress expression; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; MarR family transcriptional regulator 1483802 1064551001422 IA1_07125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MarR family transcriptional regulator YP_008613225.1 1483362 D 1064551 CDS YP_008613226.1 549479261 complement(1483850..1484317) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein pcp 1484317 1064551001423 IA1_07130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane lipoprotein pcp YP_008613226.1 1483850 R 1064551 CDS YP_008613227.1 549479262 1484589..1485710 1 NC_022525.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; Derived by automated computational analysis using gene prediction method: Protein Homology.; anhydro-N-acetylmuramic acid kinase 1485710 anmK 1064551001424 anmK Salmonella enterica subsp. enterica serovar Thompson str. RM6836 anhydro-N-acetylmuramic acid kinase YP_008613227.1 1484589 D 1064551 CDS YP_008613228.1 549479263 1485798..1486127 1 NC_022525.1 MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme inhibitor 1486127 1064551001425 IA1_07140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lysozyme inhibitor YP_008613228.1 1485798 D 1064551 CDS YP_008613229.1 549479264 1486186..1486842 1 NC_022525.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxamine 5'-phosphate oxidase 1486842 1064551001426 IA1_07145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyridoxamine 5'-phosphate oxidase YP_008613229.1 1486186 D 1064551 CDS YP_008613230.1 549479265 1486969..1488243 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosyl-tRNA synthetase 1488243 1064551001427 IA1_07150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tyrosyl-tRNA synthetase YP_008613230.1 1486969 D 1064551 CDS YP_008613231.1 549481926 1488303..1489163 1 NC_022525.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; pyridoxamine kinase 1489163 1064551001428 IA1_07155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyridoxamine kinase YP_008613231.1 1488303 D 1064551 CDS YP_008613232.1 549479266 complement(1489222..1489827) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathionine S-transferase 1489827 1064551001429 IA1_07160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathionine S-transferase YP_008613232.1 1489222 R 1064551 CDS YP_008613233.1 549479267 complement(1489932..1491437) 1 NC_022525.1 mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1491437 tppB 1064551001430 tppB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter permease YP_008613233.1 1489932 R 1064551 CDS YP_008613234.1 549479268 complement(1492039..1492674) 1 NC_022525.1 DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease IV 1492674 1064551001431 IA1_07170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endonuclease IV YP_008613234.1 1492039 R 1064551 CDS YP_008613235.1 549479269 complement(1492674..1493366) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor G 1493366 1064551001432 IA1_07175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 elongation factor G YP_008613235.1 1492674 R 1064551 CDS YP_008613236.1 549479270 complement(1493369..1493989) 1 NC_022525.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transport complex protein RsxA 1493989 1064551001433 IA1_07180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 electron transport complex protein RsxA YP_008613236.1 1493369 R 1064551 CDS YP_008613237.1 549479271 complement(1493993..1495051) 1 NC_022525.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter RnfG 1495051 rnfD 1064551001434 rnfD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 electron transporter RnfG YP_008613237.1 1493993 R 1064551 CDS YP_008613238.1 549479272 complement(1497160..1497738) 1 NC_022525.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter RnfD 1497738 1064551001436 IA1_07195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 electron transporter RnfD YP_008613238.1 1497160 R 1064551 CDS YP_008613239.1 549479273 complement(1497738..1498319) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transport complex RsxE subunit 1498319 1064551001437 IA1_07200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 electron transport complex RsxE subunit YP_008613239.1 1497738 R 1064551 CDS YP_008613240.1 549481927 complement(1498396..1498869) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1498869 1064551001438 IA1_07205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613240.1 1498396 R 1064551 CDS YP_008613241.1 549479274 complement(1498925..1499140) 1 NC_022525.1 YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; Derived by automated computational analysis using gene prediction method: Protein Homology.; oriC-binding nucleoid-associated protein 1499140 1064551001439 IA1_07210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oriC-binding nucleoid-associated protein YP_008613241.1 1498925 R 1064551 CDS YP_008613242.1 549481928 complement(1499437..1499592) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; beta-lactam resistance protein 1499592 1064551001440 IA1_07215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 beta-lactam resistance protein YP_008613242.1 1499437 R 1064551 CDS YP_008613243.1 549479275 1499770..1500810 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 1500810 1064551001441 IA1_07220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase YP_008613243.1 1499770 D 1064551 CDS YP_008613244.1 549479276 complement(1500884..1501885) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosine deaminase 1501885 1064551001442 IA1_07225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adenosine deaminase YP_008613244.1 1500884 R 1064551 CDS YP_008613245.1 549481929 complement(1502103..1503275) 1 NC_022525.1 catalyzes the formation of homocysteine and pyruvate from cystathionine; also acts a a negative regulator for the mal regulon but interacting with the transcriptional activator MalT; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aminotransferase 1503275 1064551001443 IA1_07230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aminotransferase YP_008613245.1 1502103 R 1064551 CDS YP_008613246.1 549481930 complement(1503285..1504877) 1 NC_022525.1 phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS); catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane; component IIB catalyzes the phosphorylation of the sugar molecule; IIC forms the translocation channel and contains the substrate specific binding site; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS maltose transporter subunit IICB 1504877 1064551001444 IA1_07235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS maltose transporter subunit IICB YP_008613246.1 1503285 R 1064551 CDS YP_008613247.1 549481931 1505050..1506078 1 NC_022525.1 regulates malXY which are involved in maltose-glucose transport; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LacI family transcriptional regulator 1506078 1064551001445 IA1_07240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LacI family transcriptional regulator YP_008613247.1 1505050 D 1064551 CDS YP_008613248.1 549479277 complement(1506136..1507644) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1507644 1064551001446 IA1_07245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613248.1 1506136 R 1064551 CDS YP_008613249.1 549479278 complement(1507747..1508922) 1 NC_022525.1 catalyzes the formation of of fructose 6-phosphate from mannose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannose-6-phosphate isomerase 1508922 1064551001447 IA1_07250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 mannose-6-phosphate isomerase YP_008613249.1 1507747 R 1064551 CDS YP_008613250.1 549479279 1509122..1510768 1 NC_022525.1 catalyzes the formation of malate from fumerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase 1510768 1064551001448 IA1_07255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fumarate hydratase YP_008613250.1 1509122 D 1064551 CDS YP_008613251.1 549479280 1510936..1512339 1 NC_022525.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase 1512339 fumC 1064551001449 fumC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fumarate hydratase YP_008613251.1 1510936 D 1064551 CDS YP_008613252.1 549479281 complement(1512336..1513265) 1 NC_022525.1 binds to DNA replication terminator sequences to prevent passage of replication forks; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 1513265 1064551001450 IA1_07265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-binding protein YP_008613252.1 1512336 R 1064551 CDS YP_008613253.1 549479282 complement(1513341..1514642) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein RstB 1514642 1064551001451 IA1_07270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensor protein RstB YP_008613253.1 1513341 R 1064551 CDS YP_008613254.1 549481932 complement(1514754..1516454) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; metallo-dependent Hydrolase 1516454 1064551001452 IA1_07275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 metallo-dependent Hydrolase YP_008613254.1 1514754 R 1064551 CDS YP_008613255.1 549479283 complement(1516613..1517764) 1 NC_022525.1 allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin protein C 1517764 1064551001453 IA1_07280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane porin protein C YP_008613255.1 1516613 R 1064551 CDS YP_008613256.1 549481933 1517881..1518066 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1518066 1064551001454 IA1_07285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613256.1 1517881 D 1064551 CDS YP_008613257.1 549479284 complement(1518244..1518975) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheY 1518975 1064551001455 IA1_07290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chemotaxis protein CheY YP_008613257.1 1518244 R 1064551 CDS YP_008613258.1 549479285 1519102..1519437 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1519437 1064551001456 IA1_07295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613258.1 1519102 D 1064551 CDS YP_008613259.1 549479286 complement(1519499..1520881) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine:ornithine antiporter 1520881 1064551001457 IA1_07300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginine:ornithine antiporter YP_008613259.1 1519499 R 1064551 CDS YP_008613260.1 549479287 complement(1521180..1522124) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1522124 1064551001458 IA1_07305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613260.1 1521180 R 1064551 CDS YP_008613261.1 549479288 1522651..1524180 1 NC_022525.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P) transhydrogenase subunit alpha 1524180 pntA 1064551001459 pntA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NAD(P) transhydrogenase subunit alpha YP_008613261.1 1522651 D 1064551 CDS YP_008613262.1 549479289 1524191..1525579 1 NC_022525.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridine nucleotide transhydrogenase 1525579 pntB 1064551001460 pntB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyridine nucleotide transhydrogenase YP_008613262.1 1524191 D 1064551 CDS YP_008613263.1 549479290 complement(1525754..1526788) 1 NC_022525.1 transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; pheromone autoinducer 2 transporter 1526788 tqsA 1064551001461 tqsA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pheromone autoinducer 2 transporter YP_008613263.1 1525754 R 1064551 CDS YP_008613264.1 549481934 1526957..1527094 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1527094 1064551001462 IA1_07325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613264.1 1526957 D 1064551 CDS YP_008613265.1 549479291 1527206..1527568 1 NC_022525.1 with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 1527568 1064551001463 IA1_07330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008613265.1 1527206 D 1064551 CDS YP_008613266.1 549479292 1527555..1527884 1 NC_022525.1 with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 1527884 1064551001464 IA1_07335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008613266.1 1527555 D 1064551 CDS YP_008613267.1 549479293 complement(1527924..1528745) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; serine protease 1528745 1064551001465 IA1_07340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 serine protease YP_008613267.1 1527924 R 1064551 CDS YP_008613268.1 549481935 complement(1529014..1529298) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acid shock protein precursor 1529298 1064551001466 IA1_07345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acid shock protein precursor YP_008613268.1 1529014 R 1064551 CDS YP_008613269.1 549479294 complement(1529657..1530910) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1530910 1064551001467 IA1_07350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613269.1 1529657 R 1064551 CDS YP_008613270.1 549479295 1531030..1531929 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 1531929 1064551001468 IA1_07355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcripitonal regulator YP_008613270.1 1531030 D 1064551 CDS YP_008613271.1 549479296 1532057..1533277 1 NC_022525.1 mlc, controls the expression of genes involved in the phosphotransferase and phosphoenolpyruvate systems, regulates genes involved in the uptake of sugars; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1533277 1064551001469 IA1_07360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613271.1 1532057 D 1064551 CDS YP_008613272.1 549479297 1533403..1534098 1 NC_022525.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; Derived by automated computational analysis using gene prediction method: Protein Homology.; dithiobiotin synthetase 1534098 1064551001470 IA1_07365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dithiobiotin synthetase YP_008613272.1 1533403 D 1064551 CDS YP_008613273.1 549479298 complement(1534054..1535343) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; voltage-gated ClC-type chloride channel ClcB 1535343 1064551001471 IA1_07370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 voltage-gated ClC-type chloride channel ClcB YP_008613273.1 1534054 R 1064551 CDS YP_008613274.1 549479299 complement(1535479..1536627) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter ATP-binding protein 1536627 1064551001472 IA1_07375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycine/betaine ABC transporter ATP-binding protein YP_008613274.1 1535479 R 1064551 CDS YP_008613275.1 549479300 complement(1536627..1537274) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; choline ABC transporter permease 1537274 1064551001473 IA1_07380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 choline ABC transporter permease YP_008613275.1 1536627 R 1064551 CDS YP_008613276.1 549479301 complement(1537284..1538186) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter substrate-binding protein 1538186 1064551001474 IA1_07385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycine/betaine ABC transporter substrate-binding protein YP_008613276.1 1537284 R 1064551 CDS YP_008613277.1 549479302 complement(1538215..1538925) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter permease 1538925 1064551001475 IA1_07390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycine/betaine ABC transporter permease YP_008613277.1 1538215 R 1064551 CDS YP_008613278.1 549479303 complement(1539230..1539844) 1 NC_022525.1 binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; twin-argninine leader-binding protein DmsD 1539844 1064551001476 IA1_07395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 twin-argninine leader-binding protein DmsD YP_008613278.1 1539230 R 1064551 CDS YP_008613279.1 549479304 complement(1539887..1540744) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit H 1540744 1064551001477 IA1_07400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dimethyl sulfoxide reductase subunit H YP_008613279.1 1539887 R 1064551 CDS YP_008613280.1 549479305 complement(1540746..1541363) 1 NC_022525.1 oxidoreductase, Fe-S subunit; terminal electron transfer protein for the reduction of DMSO; Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit B 1541363 1064551001478 IA1_07405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dimethyl sulfoxide reductase subunit B YP_008613280.1 1540746 R 1064551 CDS YP_008613281.1 549479306 complement(1541374..1543809) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit A 1543809 1064551001479 IA1_07410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dimethyl sulfoxide reductase subunit A YP_008613281.1 1541374 R 1064551 CDS YP_008613282.1 549479307 complement(1543908..1546346) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit A 1546346 1064551001480 IA1_07415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dimethyl sulfoxide reductase subunit A YP_008613282.1 1543908 R 1064551 CDS YP_008613283.1 549481936 complement(1546503..1546808) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1546808 1064551001481 IA1_07420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613283.1 1546503 R 1064551 CDS YP_008613284.1 549479308 1546915..1547625 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 1547625 1064551001482 IA1_07425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein YP_008613284.1 1546915 D 1064551 CDS YP_008613285.1 549479309 complement(1547666..1548226) 1 NC_022525.1 catalyzes the formation of N(1)- and N(8)-acetylspermidine from spermidine; Derived by automated computational analysis using gene prediction method: Protein Homology.; spermidine N1-acetyltransferase 1548226 1064551001483 IA1_07430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 spermidine N1-acetyltransferase YP_008613285.1 1547666 R 1064551 CDS YP_008613286.1 549479310 complement(1548262..1548603) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1548603 1064551001484 IA1_07435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613286.1 1548262 R 1064551 CDS YP_008613287.1 549479311 1548755..1549081 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1549081 1064551001485 IA1_07440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613287.1 1548755 D 1064551 CDS YP_008613288.1 549479312 1549203..1550417 1 NC_022525.1 starvation-sensing protein; maybe involved in homoserine lactone degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional D-altronate/D-mannonate dehydratase 1550417 1064551001486 IA1_07445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional D-altronate/D-mannonate dehydratase YP_008613288.1 1549203 D 1064551 CDS YP_008613289.1 549479313 1550428..1551447 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 1551447 1064551001487 IA1_07450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase YP_008613289.1 1550428 D 1064551 CDS YP_008613290.1 549481937 1551540..1552880 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; MFS transporter 1552880 1064551001488 IA1_07455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MFS transporter YP_008613290.1 1551540 D 1064551 CDS YP_008613291.1 549479314 1553024..1554490 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; D-mannonate oxidoreductase 1554490 1064551001489 IA1_07460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-mannonate oxidoreductase YP_008613291.1 1553024 D 1064551 CDS YP_008613292.1 549479315 complement(1554557..1554760) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1554760 1064551001490 IA1_07465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613292.1 1554557 R 1064551 CDS YP_008613293.1 549479316 complement(1554941..1555627) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 1555627 1064551001491 IA1_07470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GntR family transcriptional regulator YP_008613293.1 1554941 R 1064551 CDS YP_008613294.1 549479317 complement(1555757..1556503) 1 NC_022525.1 NADP(+)-dependent; catalyzes the formation of 3-hydroxypropionate from the toxic malonic semialdehyde, catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; malonic semialdehyde reductase 1556503 1064551001492 IA1_07475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 malonic semialdehyde reductase YP_008613294.1 1555757 R 1064551 CDS YP_008613295.1 549479318 1556642..1558684 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dipeptidyl carboxypeptidase II 1558684 1064551001493 IA1_07480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dipeptidyl carboxypeptidase II YP_008613295.1 1556642 D 1064551 CDS YP_008613296.1 549479319 1559028..1559210 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1559210 1064551001494 IA1_07485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613296.1 1559028 D 1064551 CDS YP_008613297.1 549479320 complement(1559330..1559857) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1559857 1064551001495 IA1_07490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613297.1 1559330 R 1064551 CDS YP_008613298.1 549479321 1560284..1560676 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1560676 1064551001496 IA1_07495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613298.1 1560284 D 1064551 CDS YP_008613299.1 549481938 complement(1561024..1561119) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1561119 1064551001497 IA1_07500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613299.1 1561024 R 1064551 CDS YP_008613300.1 549481939 complement(1561367..1562554) 1 NC_022525.1 YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transporter 1562554 1064551001498 IA1_07505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008613300.1 1561367 R 1064551 CDS YP_008613301.1 549479322 1562782..1563684 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; O-acetylserine/cysteine export protein 1563684 1064551001499 IA1_07510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 O-acetylserine/cysteine export protein YP_008613301.1 1562782 D 1064551 CDS YP_008613302.1 549479323 complement(1563803..1564018) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1564018 1064551001500 IA1_07515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613302.1 1563803 R 1064551 CDS YP_008613303.1 549479324 complement(1564047..1564430) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1564430 1064551001501 IA1_07520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613303.1 1564047 R 1064551 CDS YP_008613304.1 549479325 complement(1564450..1564884) 1 NC_022525.1 Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1564884 1064551001502 IA1_07525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613304.1 1564450 R 1064551 CDS YP_008613305.1 549479326 1565143..1565808 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1565808 1064551001503 IA1_07530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613305.1 1565143 D 1064551 CDS YP_008613306.1 549479327 complement(1565855..1567045) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose transporter 1567045 1064551001504 IA1_07535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arabinose transporter YP_008613306.1 1565855 R 1064551 CDS YP_008613307.1 549479328 complement(1567161..1568033) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 1568033 1064551001505 IA1_07540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcripitonal regulator YP_008613307.1 1567161 R 1064551 CDS YP_008613308.1 549479329 1568136..1569524 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase 1569524 1064551001506 IA1_07545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 succinate dehydrogenase YP_008613308.1 1568136 D 1064551 CDS YP_008613309.1 549479330 1569597..1570523 1 NC_022525.1 catalyzes the formation of glutamate from glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaminase 1570523 1064551001507 IA1_07550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutaminase YP_008613309.1 1569597 D 1064551 CDS YP_008613310.1 549479331 1570523..1570882 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1570882 1064551001508 IA1_07555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613310.1 1570523 D 1064551 CDS YP_008613311.1 549479332 1571104..1572051 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1572051 1064551001509 IA1_07560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613311.1 1571104 D 1064551 CDS YP_008613312.1 549479333 complement(1572107..1572649) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1572649 1064551001510 IA1_07565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613312.1 1572107 R 1064551 CDS YP_008613313.1 549479334 1573366..1574484 1 NC_022525.1 allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin protein C 1574484 1064551001511 IA1_07570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane porin protein C YP_008613313.1 1573366 D 1064551 CDS YP_008613314.1 549479335 complement(1574625..1574966) 1 NC_022525.1 plays a role in hydrogenase nickel cofactor insertion; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase nickel incorporation protein 1574966 hypA 1064551001512 hypA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase nickel incorporation protein YP_008613314.1 1574625 R 1064551 CDS YP_008613315.1 549479336 complement(1574979..1575866) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP/GTP-binding protein 1575866 1064551001513 IA1_07580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP/GTP-binding protein YP_008613315.1 1574979 R 1064551 CDS YP_008613316.1 549479337 complement(1575854..1576915) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase-1 operon protein HyaF2 1576915 1064551001514 IA1_07585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase-1 operon protein HyaF2 YP_008613316.1 1575854 R 1064551 CDS YP_008613317.1 549479338 complement(1576933..1577343) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1577343 1064551001515 IA1_07590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase YP_008613317.1 1576933 R 1064551 CDS YP_008613318.1 549479339 complement(1577340..1577639) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase formation protein 1577639 1064551001516 IA1_07595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase formation protein YP_008613318.1 1577340 R 1064551 CDS YP_008613319.1 549479340 complement(1577639..1578247) 1 NC_022525.1 HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1 maturation protease 1578247 1064551001517 IA1_07600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase 1 maturation protease YP_008613319.1 1577639 R 1064551 CDS YP_008613320.1 549479341 complement(1578253..1578927) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1 b-type cytochrome subunit 1578927 1064551001518 IA1_07605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase 1 b-type cytochrome subunit YP_008613320.1 1578253 R 1064551 CDS YP_008613321.1 549479342 complement(1578947..1580749) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1580749 1064551001519 IA1_07610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase YP_008613321.1 1578947 R 1064551 CDS YP_008613322.1 549479343 complement(1580752..1581855) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; uptake hydrogenase small subunit 1581855 1064551001520 IA1_07615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 uptake hydrogenase small subunit YP_008613322.1 1580752 R 1064551 CDS YP_008613323.1 549479344 1582283..1583374 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 1583374 1064551001521 IA1_07620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrolase YP_008613323.1 1582283 D 1064551 CDS YP_008613324.1 549481940 1583540..1584211 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1584211 1064551001522 IA1_07625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613324.1 1583540 D 1064551 CDS YP_008613325.1 549479345 complement(1584270..1585295) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase 1585295 1064551001523 IA1_07630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alcohol dehydrogenase YP_008613325.1 1584270 R 1064551 CDS YP_008613326.1 549479346 complement(1585270..1586556) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hexuronate transporter 1586556 1064551001524 IA1_07635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hexuronate transporter YP_008613326.1 1585270 R 1064551 CDS YP_008613327.1 549479347 complement(1586733..1588289) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PhoPQ-regulated protein 1588289 1064551001525 IA1_07640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PhoPQ-regulated protein YP_008613327.1 1586733 R 1064551 CDS YP_008613328.1 549479348 complement(1588359..1589600) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 1589600 1064551001526 IA1_07645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008613328.1 1588359 R 1064551 CDS YP_008613329.1 549481941 complement(1589590..1591098) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1591098 1064551001527 IA1_07650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613329.1 1589590 R 1064551 CDS YP_008613330.1 549479349 1591143..1591631 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MarR family transcriptional regulator 1591631 1064551001528 IA1_07655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MarR family transcriptional regulator YP_008613330.1 1591143 D 1064551 CDS YP_008613331.1 549481942 1591824..1592903 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; S-adenosylmethionine tRNA ribosyltransferase 1592903 1064551001529 IA1_07660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 S-adenosylmethionine tRNA ribosyltransferase YP_008613331.1 1591824 D 1064551 CDS YP_008613332.1 549481943 complement(1592955..1593416) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; endoribonuclease L-PSP 1593416 1064551001530 IA1_07665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endoribonuclease L-PSP YP_008613332.1 1592955 R 1064551 CDS YP_008613333.1 549479350 complement(1593515..1593799) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; RelE toxin 1593799 1064551001531 IA1_07670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RelE toxin YP_008613333.1 1593515 R 1064551 CDS YP_008613334.1 549481944 complement(1593789..1594037) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; plasmid stabilization protein 1594037 1064551001532 IA1_07675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 plasmid stabilization protein YP_008613334.1 1593789 R 1064551 CDS YP_008613335.1 549481945 complement(1594257..1594640) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 1594640 1064551001533 IA1_07680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transposase YP_008613335.1 1594257 R 1064551 CDS YP_008613336.1 549481946 complement(1594993..1595283) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1595283 1064551001534 IA1_07685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613336.1 1594993 R 1064551 CDS YP_008613337.1 549481947 complement(1595585..1597051) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; coiled-coil protein 1597051 1064551001535 IA1_07690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 coiled-coil protein YP_008613337.1 1595585 R 1064551 CDS YP_008613338.1 549479351 1597309..1598316 1 NC_022525.1 controls transcription of galETKM; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1598316 1064551001536 IA1_07695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613338.1 1597309 D 1064551 CDS YP_008613339.1 549479352 1598460..1599911 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 1599911 1064551001537 IA1_07700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sodium:proton antiporter YP_008613339.1 1598460 D 1064551 CDS YP_008613340.1 549479353 1599924..1601126 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aminotransferase 1601126 1064551001538 IA1_07705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aminotransferase YP_008613340.1 1599924 D 1064551 CDS YP_008613341.1 549479354 complement(1601239..1603314) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen-debranching protein 1603314 1064551001539 IA1_07710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycogen-debranching protein YP_008613341.1 1601239 R 1064551 CDS YP_008613342.1 549479355 complement(1603371..1605899) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; malto-oligosyltrehalose synthase 1605899 1064551001540 IA1_07715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 malto-oligosyltrehalose synthase YP_008613342.1 1603371 R 1064551 CDS YP_008613343.1 549481948 complement(1605896..1607680) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; malto-oligosyltrehalose trehalohydrolase 1607680 1064551001541 IA1_07720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 malto-oligosyltrehalose trehalohydrolase YP_008613343.1 1605896 R 1064551 CDS YP_008613344.1 549479356 complement(1607809..1608594) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1608594 1064551001542 IA1_07725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613344.1 1607809 R 1064551 CDS YP_008613345.1 549479357 complement(1608737..1609066) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acid-resistance protein 1609066 1064551001543 IA1_07730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acid-resistance protein YP_008613345.1 1608737 R 1064551 CDS YP_008613346.1 549479358 complement(1609416..1609847) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peroxiredoxin 1609847 1064551001544 IA1_07735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peroxiredoxin YP_008613346.1 1609416 R 1064551 CDS YP_008613347.1 549479359 1610359..1610574 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm-dependent modulation protein 1610574 1064551001545 IA1_07740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 biofilm-dependent modulation protein YP_008613347.1 1610359 D 1064551 CDS YP_008613348.1 549481949 1610669..1610812 1 NC_022525.1 protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 30S ribosomal protein S22 1610812 rpsV 1064551001546 rpsV Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S22 YP_008613348.1 1610669 D 1064551 CDS YP_008613349.1 549479360 1610989..1612686 1 NC_022525.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate dehydrogenase 1612686 1064551001547 IA1_07750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 malate dehydrogenase YP_008613349.1 1610989 D 1064551 CDS YP_008613350.1 549479361 1612972..1613982 1 NC_022525.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetaldehyde reductase 1613982 adhP 1064551001548 adhP Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetaldehyde reductase YP_008613350.1 1612972 D 1064551 CDS YP_008613351.1 549479362 complement(1614073..1614729) 1 NC_022525.1 cytochrome b556(FDO) component; heme containing; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit gamma 1614729 1064551001549 IA1_07760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate dehydrogenase-N subunit gamma YP_008613351.1 1614073 R 1064551 CDS YP_008613352.1 549479363 complement(1614722..1615606) 1 NC_022525.1 beta subunit; involved in the use of formate as an electron donor during aerobic respiration; acts to transfer electrons from the major(alpha subunit) to the cytochrome b556(gamma subunit); Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit beta 1615606 1064551001550 IA1_07765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate dehydrogenase-N subunit beta YP_008613352.1 1614722 R 1064551 CDS YP_008613353.1 549481950 complement(1615620..1618031) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; formate dehydrogenase subunit alpha 1618031 1064551001551 IA1_07770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate dehydrogenase subunit alpha YP_008613353.1 1615620 R 1064551 CDS YP_008613354.1 549481951 complement(1618080..1618667) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sulfate ABC transporter substrate-binding protein 1618667 1064551001552 IA1_07775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfate ABC transporter substrate-binding protein YP_008613354.1 1618080 R 1064551 CDS YP_008613355.1 549479364 1618945..1619826 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid exporter 1619826 1064551001553 IA1_07780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aromatic amino acid exporter YP_008613355.1 1618945 D 1064551 CDS YP_008613356.1 549479365 1620351..1621439 1 NC_022525.1 allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin protein C 1621439 1064551001554 IA1_07785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane porin protein C YP_008613356.1 1620351 D 1064551 CDS YP_008613357.1 549481952 1621643..1621963 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1621963 1064551001555 IA1_07790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613357.1 1621643 D 1064551 CDS YP_008613358.1 549479366 complement(1621988..1623475) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl viologen resistance protein SmvA 1623475 1064551001556 IA1_07795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methyl viologen resistance protein SmvA YP_008613358.1 1621988 R 1064551 CDS YP_008613359.1 549479367 1623593..1624171 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator 1624171 1064551001557 IA1_07800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 TetR family transcriptional regulator YP_008613359.1 1623593 D 1064551 CDS YP_008613360.1 549479368 1624385..1625773 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite extrusion protein 2 1625773 1064551001558 IA1_07805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrite extrusion protein 2 YP_008613360.1 1624385 D 1064551 CDS YP_008613361.1 549479369 1625851..1629591 1 NC_022525.1 with NarYV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit alpha 1629591 narZ 1064551001559 narZ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrate reductase A subunit alpha YP_008613361.1 1625851 D 1064551 CDS YP_008613362.1 549479370 1629588..1631132 1 NC_022525.1 with NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit beta 1631132 narH 1064551001560 narH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrate reductase A subunit beta YP_008613362.1 1629588 D 1064551 CDS YP_008613363.1 549479371 1631132..1631827 1 NC_022525.1 delta subunit of nitrate reductase 1; chaperone for the insertion of the molybdenum cofactor and assembly of nitrate reductase 1; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase molybdenum cofactor assembly chaperone NarJ 1631827 1064551001561 IA1_07820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrate reductase molybdenum cofactor assembly chaperone NarJ YP_008613363.1 1631132 D 1064551 CDS YP_008613364.1 549479372 1631824..1632504 1 NC_022525.1 with NarGJH catalyzes the reduction of nitrate; the gamma subunit localizes NarGHI to the membrane; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit gamma 1632504 narI 1064551001562 narI Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrate reductase A subunit gamma YP_008613364.1 1631824 D 1064551 CDS YP_008613365.1 549479373 1632610..1633503 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1633503 1064551001563 IA1_07830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613365.1 1632610 D 1064551 CDS YP_008613366.1 549479374 complement(1633539..1634384) 1 NC_022525.1 catalyzes the addition of the acetyl moity of acetyl-CoA to an N-hydroxy-arylamine to form an N-acetoxyarylamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-hydroxyarylamine O-acetyltransferase 1634384 1064551001564 IA1_07835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-hydroxyarylamine O-acetyltransferase YP_008613366.1 1633539 R 1064551 CDS YP_008613367.1 549479375 complement(1634666..1635298) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; effector protein steA 1635298 1064551001565 IA1_07840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 effector protein steA YP_008613367.1 1634666 R 1064551 CDS YP_008613368.1 549479376 1635806..1637299 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; L-asparagine permease 1637299 1064551001566 IA1_07845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-asparagine permease YP_008613368.1 1635806 D 1064551 CDS YP_008613369.1 549479377 complement(1637376..1637597) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1637597 1064551001567 IA1_07850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613369.1 1637376 R 1064551 CDS YP_008613370.1 549479378 complement(1637742..1638803) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1638803 1064551001568 IA1_07855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613370.1 1637742 R 1064551 CDS YP_008613371.1 549479379 1639067..1641187 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent receptor 1641187 1064551001569 IA1_07860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 TonB-dependent receptor YP_008613371.1 1639067 D 1064551 CDS YP_008613372.1 549479380 complement(1641243..1641908) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1641908 1064551001570 IA1_07865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613372.1 1641243 R 1064551 CDS YP_008613373.1 549481953 complement(1642242..1643279) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1643279 1064551001571 IA1_07870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613373.1 1642242 R 1064551 CDS YP_008613374.1 549479381 1643503..1644018 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyltransferase 1644018 1064551001572 IA1_07875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetyltransferase YP_008613374.1 1643503 D 1064551 CDS YP_008613375.1 549479382 1644018..1644467 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1644467 1064551001573 IA1_07880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613375.1 1644018 D 1064551 CDS YP_008613376.1 549479383 complement(1644472..1644705) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1644705 1064551001574 IA1_07885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613376.1 1644472 R 1064551 CDS YP_008613377.1 549479384 1644929..1646254 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ssrAB activated protein 1646254 1064551001575 IA1_07890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ssrAB activated protein YP_008613377.1 1644929 D 1064551 CDS YP_008613378.1 549479385 1646259..1649240 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; virulence factor SrfB 1649240 1064551001576 IA1_07895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 virulence factor SrfB YP_008613378.1 1646259 D 1064551 CDS YP_008613379.1 549479386 1649237..1651381 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; virulence effector SrfC 1651381 1064551001577 IA1_07900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 virulence effector SrfC YP_008613379.1 1649237 D 1064551 CDS YP_008613380.1 549481954 complement(1651426..1651608) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1651608 1064551001578 IA1_07905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613380.1 1651426 R 1064551 CDS YP_008613381.1 549481955 1651798..1651893 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1651893 1064551001579 IA1_07910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613381.1 1651798 D 1064551 CDS YP_008613382.1 549479387 complement(1651998..1653443) 1 NC_022525.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-aminobutyraldehyde dehydrogenase 1653443 1064551001580 IA1_07915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 gamma-aminobutyraldehyde dehydrogenase YP_008613382.1 1651998 R 1064551 CDS YP_008613383.1 549479388 complement(1653558..1654982) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 1654982 1064551001581 IA1_07920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GntR family transcriptional regulator YP_008613383.1 1653558 R 1064551 CDS YP_008613384.1 549479389 complement(1655118..1655888) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine dipeptidase 1655888 1064551001582 IA1_07925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-alanyl-D-alanine dipeptidase YP_008613384.1 1655118 R 1064551 CDS YP_008613385.1 549481956 complement(1656410..1656718) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; D-alanyl-D-alanine dipeptidase 1656718 1064551001583 IA1_07930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-alanyl-D-alanine dipeptidase YP_008613385.1 1656410 R 1064551 CDS YP_008613386.1 549479390 1657345..1658295 1 NC_022525.1 translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; Derived by automated computational analysis using gene prediction method: Protein Homology.; effector protein SifB 1658295 sifB 1064551001584 sifB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 effector protein SifB YP_008613386.1 1657345 D 1064551 CDS YP_008613387.1 549479391 1658566..1658799 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1658799 1064551001585 IA1_07940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613387.1 1658566 D 1064551 CDS YP_008613388.1 549479392 complement(1658800..1660764) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 1660764 1064551001586 IA1_07945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protease YP_008613388.1 1658800 R 1064551 CDS YP_008613389.1 549479393 complement(1660843..1661379) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator 1661379 1064551001587 IA1_07950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 XRE family transcriptional regulator YP_008613389.1 1660843 R 1064551 CDS YP_008613390.1 549479394 1661471..1662649 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1662649 1064551001588 IA1_07955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613390.1 1661471 D 1064551 CDS YP_008613391.1 549479395 complement(1662703..1663371) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1663371 1064551001589 IA1_07960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613391.1 1662703 R 1064551 CDS YP_008613392.1 549481957 complement(1663527..1664123) 1 NC_022525.1 with TehA confers resistance to tellurite; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tellurite resistance protein TehB 1664123 1064551001590 IA1_07965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tellurite resistance protein TehB YP_008613392.1 1663527 R 1064551 CDS YP_008613393.1 549479396 complement(1664110..1665123) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tellurite resistance protein TehA 1665123 1064551001591 IA1_07970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tellurite resistance protein TehA YP_008613393.1 1664110 R 1064551 CDS YP_008613394.1 549479397 1665230..1666210 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase 1666210 1064551001592 IA1_07975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetyltransferase YP_008613394.1 1665230 D 1064551 CDS YP_008613395.1 549479398 complement(1666207..1666746) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal-protein-L7/L12-serine acetyltransferase 1666746 1064551001593 IA1_07980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribosomal-protein-L7/L12-serine acetyltransferase YP_008613395.1 1666207 R 1064551 CDS YP_008613396.1 549479399 1666963..1668081 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase 1668081 1064551001594 IA1_07985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aminopeptidase YP_008613396.1 1666963 D 1064551 CDS YP_008613397.1 549479400 1668078..1668359 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIB 1668359 1064551001595 IA1_07990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sugar transporter subunit IIB YP_008613397.1 1668078 D 1064551 CDS YP_008613398.1 549479401 1668370..1669683 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; permase 1669683 1064551001596 IA1_07995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 permase YP_008613398.1 1668370 D 1064551 CDS YP_008613399.1 549479402 1669697..1670503 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sgc region protein SgcQ 1670503 1064551001597 IA1_08000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sgc region protein SgcQ YP_008613399.1 1669697 D 1064551 CDS YP_008613400.1 549479403 1670635..1671072 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIA 1671072 1064551001598 IA1_08005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sugar transporter subunit IIA YP_008613400.1 1670635 D 1064551 CDS YP_008613401.1 549479404 1671084..1671716 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; epimerase 1671716 1064551001599 IA1_08010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 epimerase YP_008613401.1 1671084 D 1064551 CDS YP_008613402.1 549479405 1671726..1672523 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1672523 1064551001600 IA1_08015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613402.1 1671726 D 1064551 CDS YP_008613403.1 549479406 1672523..1672960 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoglycoside N(6')-acetyltransferase 1672960 1064551001601 IA1_08020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aminoglycoside N(6')-acetyltransferase YP_008613403.1 1672523 D 1064551 CDS YP_008613404.1 549479407 complement(1673015..1674217) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; L-lactate oxidase 1674217 1064551001602 IA1_08025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-lactate oxidase YP_008613404.1 1673015 R 1064551 CDS YP_008613405.1 549479408 complement(1674229..1674804) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1674804 1064551001603 IA1_08030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613405.1 1674229 R 1064551 CDS YP_008613406.1 549479409 complement(1675000..1676655) 1 NC_022525.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucan biosynthesis protein D 1676655 mdoD 1064551001604 mdoD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucan biosynthesis protein D YP_008613406.1 1675000 R 1064551 CDS YP_008613407.1 549479410 complement(1676875..1678383) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxylesterase 1678383 1064551001605 IA1_08040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carboxylesterase YP_008613407.1 1676875 R 1064551 CDS YP_008613408.1 549479411 complement(1678432..1679775) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1679775 1064551001606 IA1_08045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613408.1 1678432 R 1064551 CDS YP_008613409.1 549479412 1680068..1680991 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 1680991 1064551001607 IA1_08050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcripitonal regulator YP_008613409.1 1680068 D 1064551 CDS YP_008613410.1 549479413 complement(1681052..1682677) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein 1682677 1064551001608 IA1_08055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methyl-accepting chemotaxis protein YP_008613410.1 1681052 R 1064551 CDS YP_008613411.1 549479414 complement(1682846..1683964) 1 NC_022525.1 catalyzes the formation of S-formylglutathione from S-(hydroxymethyl)glutathione; also catalyzes the formation of aldehyde or ketone from alcohols; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-(hydroxymethyl)glutathione dehydrogenase 1683964 1064551001609 IA1_08060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 S-(hydroxymethyl)glutathione dehydrogenase YP_008613411.1 1682846 R 1064551 CDS YP_008613412.1 549479415 complement(1683996..1684271) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1684271 1064551001610 IA1_08065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613412.1 1683996 R 1064551 CDS YP_008613413.1 549481958 complement(1685034..1685159) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1685159 1064551001611 IA1_08070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613413.1 1685034 R 1064551 CDS YP_008613414.1 549481959 complement(1685324..1686007) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1686007 1064551001612 IA1_08075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613414.1 1685324 R 1064551 CDS YP_008613415.1 549479416 1686466..1687692 1 NC_022525.1 involved in bacterial survival in the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 2 effector protein SseJ 1687692 1064551001613 IA1_08080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island 2 effector protein SseJ YP_008613415.1 1686466 D 1064551 CDS YP_008613416.1 549481960 complement(1687813..1688157) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1688157 1064551001614 IA1_08085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613416.1 1687813 R 1064551 CDS YP_008613417.1 549479417 1689064..1689825 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid-binding protein 1689825 1064551001615 IA1_08090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid-binding protein YP_008613417.1 1689064 D 1064551 CDS YP_008613418.1 549479418 1689832..1690479 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; polar amino acid ABC transporter ATP-binding protein 1690479 1064551001616 IA1_08095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 polar amino acid ABC transporter ATP-binding protein YP_008613418.1 1689832 D 1064551 CDS YP_008613419.1 549479419 1690504..1691235 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate ABC transporter ATP-binding protein 1691235 1064551001617 IA1_08100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfate ABC transporter ATP-binding protein YP_008613419.1 1690504 D 1064551 CDS YP_008613420.1 549479420 1691232..1691912 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease 1691912 1064551001618 IA1_08105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid ABC transporter permease YP_008613420.1 1691232 D 1064551 CDS YP_008613421.1 549481961 1692202..1693599 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1693599 1064551001619 IA1_08110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613421.1 1692202 D 1064551 CDS YP_008613422.1 549481962 complement(1693600..1693695) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1693695 1064551001620 IA1_08115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613422.1 1693600 R 1064551 CDS YP_008613423.1 549481963 1694207..1694725 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; SAM-dependent methyltransferase 1694725 1064551001621 IA1_08120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 SAM-dependent methyltransferase YP_008613423.1 1694207 D 1064551 CDS YP_008613424.1 549479421 complement(1694996..1695526) 1 NC_022525.1 B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome B561 1695526 1064551001622 IA1_08125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome B561 YP_008613424.1 1694996 R 1064551 CDS YP_008613425.1 549479422 complement(1695643..1696443) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1696443 1064551001623 IA1_08130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613425.1 1695643 R 1064551 CDS YP_008613426.1 549479423 complement(1696507..1700427) 1 NC_022525.1 involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 1700427 1064551001624 IA1_08135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA helicase YP_008613426.1 1696507 R 1064551 CDS YP_008613427.1 549479424 1700610..1701215 1 NC_022525.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; Derived by automated computational analysis using gene prediction method: Protein Homology.; azoreductase 1701215 1064551001625 IA1_08140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 azoreductase YP_008613427.1 1700610 D 1064551 CDS YP_008613428.1 549481964 complement(1701212..1701550) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; S-(hydroxymethyl)glutathione synthase 1701550 1064551001626 IA1_08145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 S-(hydroxymethyl)glutathione synthase YP_008613428.1 1701212 R 1064551 CDS YP_008613429.1 549479425 complement(1701804..1702127) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1702127 1064551001627 IA1_08150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613429.1 1701804 R 1064551 CDS YP_008613430.1 549479426 complement(1702135..1702326) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1702326 1064551001628 IA1_08155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613430.1 1702135 R 1064551 CDS YP_008613431.1 549479427 complement(1702326..1704962) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1704962 1064551001629 IA1_08160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613431.1 1702326 R 1064551 CDS YP_008613432.1 549479428 1705202..1706191 1 NC_022525.1 fermentative; catalyzes the formationof pyruvate from lactate; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-lactate dehydrogenase 1706191 1064551001630 IA1_08165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-lactate dehydrogenase YP_008613432.1 1705202 D 1064551 CDS YP_008613433.1 549479429 1706302..1706712 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; heat-inducible protein 1706712 1064551001631 IA1_08170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heat-inducible protein YP_008613433.1 1706302 D 1064551 CDS YP_008613434.1 549481965 complement(1706756..1707022) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1707022 1064551001632 IA1_08175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613434.1 1706756 R 1064551 CDS YP_008613435.1 549479430 1707298..1710822 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate-flavodoxin oxidoreductase 1710822 1064551001633 IA1_08180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyruvate-flavodoxin oxidoreductase YP_008613435.1 1707298 D 1064551 CDS YP_008613436.1 549481966 1711304..1711738 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1711738 1064551001634 IA1_08185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613436.1 1711304 D 1064551 CDS YP_008613437.1 549479431 complement(1711788..1712126) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 1712126 1064551001635 IA1_08190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008613437.1 1711788 R 1064551 CDS YP_008613438.1 549481967 complement(1712119..1712271) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; multidrug transporter 1712271 1064551001636 IA1_08195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008613438.1 1712119 R 1064551 CDS YP_008613439.1 549479432 1712481..1713416 1 NC_022525.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; forms 2-thiocytidine (s(2)C); Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA 2-thiocytidine biosynthesis protein TtcA 1713416 1064551001637 IA1_08200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA 2-thiocytidine biosynthesis protein TtcA YP_008613439.1 1712481 D 1064551 CDS YP_008613440.1 549479433 complement(1713460..1714833) 1 NC_022525.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 1714833 1064551001638 IA1_08205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA helicase YP_008613440.1 1713460 R 1064551 CDS YP_008613441.1 549479434 complement(1715320..1716303) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter 1716303 zntB 1064551001639 zntB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 zinc transporter YP_008613441.1 1715320 R 1064551 CDS YP_008613442.1 549479435 complement(1716449..1717603) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; chemo-receptor protein 1717603 1064551001640 IA1_08215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chemo-receptor protein YP_008613442.1 1716449 R 1064551 CDS YP_008613443.1 549479436 complement(1717996..1718559) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA endonuclease SmrA 1718559 1064551001641 IA1_08220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA endonuclease SmrA YP_008613443.1 1717996 R 1064551 CDS YP_008613444.1 549479437 1718817..1719332 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; methylated-DNA--protein-cysteine methyltransferase 1719332 1064551001642 IA1_08225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methylated-DNA--protein-cysteine methyltransferase YP_008613444.1 1718817 D 1064551 CDS YP_008613445.1 549479438 1719528..1720280 1 NC_022525.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate/nitrate reduction transcriptional regulator 1720280 1064551001643 IA1_08230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fumarate/nitrate reduction transcriptional regulator YP_008613445.1 1719528 D 1064551 CDS YP_008613446.1 549479439 1720431..1721378 1 NC_022525.1 with UspC and UspD is involved in resistance to UV irradiation; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein E 1721378 1064551001644 IA1_08235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 universal stress protein E YP_008613446.1 1720431 D 1064551 CDS YP_008613447.1 549481968 complement(1721433..1721687) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1721687 1064551001645 IA1_08240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613447.1 1721433 R 1064551 CDS YP_008613448.1 549479440 1721926..1722957 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MscS family inner membrane protein YnaI 1722957 1064551001646 IA1_08245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MscS family inner membrane protein YnaI YP_008613448.1 1721926 D 1064551 CDS YP_008613449.1 549479441 complement(1723043..1723645) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator 1723645 1064551001647 IA1_08250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 XRE family transcriptional regulator YP_008613449.1 1723043 R 1064551 CDS YP_008613450.1 549479442 1723689..1724375 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1724375 1064551001648 IA1_08255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613450.1 1723689 D 1064551 CDS YP_008613451.1 549481969 1724403..1724741 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Dimeric alpha-beta barrel domain protein 1724741 1064551001649 IA1_08260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Dimeric alpha-beta barrel domain protein YP_008613451.1 1724403 D 1064551 CDS YP_008613452.1 549479443 complement(1724848..1725405) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol peroxidase 1725405 1064551001650 IA1_08265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiol peroxidase YP_008613452.1 1724848 R 1064551 CDS YP_008613453.1 549481970 complement(1725501..1726325) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1726325 1064551001651 IA1_08270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613453.1 1725501 R 1064551 CDS YP_008613454.1 549479444 complement(1726352..1728334) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; invasin 1728334 1064551001652 IA1_08275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 invasin YP_008613454.1 1726352 R 1064551 CDS YP_008613455.1 549479445 complement(1728409..1729254) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 1729254 1064551001653 IA1_08280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein YP_008613455.1 1728409 R 1064551 CDS YP_008613456.1 549479446 1729554..1730405 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1730405 1064551001654 IA1_08285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613456.1 1729554 D 1064551 CDS YP_008613457.1 549481971 1730797..1731906 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1731906 1064551001655 IA1_08290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613457.1 1730797 D 1064551 CDS YP_008613458.1 549479447 complement(1732120..1732356) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1732356 1064551001656 IA1_08295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613458.1 1732120 R 1064551 CDS YP_008613459.1 549479448 complement(1732485..1733075) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator 1733075 1064551001657 IA1_08300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 TetR family transcriptional regulator YP_008613459.1 1732485 R 1064551 CDS YP_008613460.1 549479449 1733153..1733866 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 1733866 1064551001658 IA1_08305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase YP_008613460.1 1733153 D 1064551 CDS YP_008613461.1 549479450 complement(1733957..1734826) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aldo/keto reductase 1734826 1064551001659 IA1_08310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aldo/keto reductase YP_008613461.1 1733957 R 1064551 CDS YP_008613462.1 549479451 complement(1735103..1736008) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 1736008 1064551001660 IA1_08315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcriptional regulator YP_008613462.1 1735103 R 1064551 CDS YP_008613463.1 549479452 1736127..1737056 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 2'-hydroxyisoflavone reductase 1737056 1064551001661 IA1_08320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2'-hydroxyisoflavone reductase YP_008613463.1 1736127 D 1064551 CDS YP_008613464.1 549479453 complement(1737153..1738766) 1 NC_022525.1 is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein 1738766 1064551001662 IA1_08325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter substrate-binding protein YP_008613464.1 1737153 R 1064551 CDS YP_008613465.1 549479454 1738956..1739684 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; murein peptide amidase A 1739684 1064551001663 IA1_08330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 murein peptide amidase A YP_008613465.1 1738956 D 1064551 CDS YP_008613466.1 549479455 complement(1739659..1740624) 1 NC_022525.1 catalyzes the epimerization of L-alanyl-D-glutamate to L-alanyl-L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-Ala-D/L-Glu epimerase 1740624 1064551001664 IA1_08335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-Ala-D/L-Glu epimerase YP_008613466.1 1739659 R 1064551 CDS YP_008613467.1 549479456 1740740..1741246 1 NC_022525.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid hydroperoxide peroxidase 1741246 tpx 1064551001665 tpx Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipid hydroperoxide peroxidase YP_008613467.1 1740740 D 1064551 CDS YP_008613468.1 549479457 complement(1741336..1742877) 1 NC_022525.1 regulates genes involved in the biosynthesis and transport of aromatic amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1742877 1064551001666 IA1_08345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613468.1 1741336 R 1064551 CDS YP_008613469.1 549479458 complement(1743025..1744086) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1744086 1064551001667 IA1_08350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613469.1 1743025 R 1064551 CDS YP_008613470.1 549481972 complement(1744083..1745480) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1745480 1064551001668 IA1_08355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613470.1 1744083 R 1064551 CDS YP_008613471.1 549479459 complement(1745629..1745943) 1 NC_022525.1 rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate:cyanide sulfurtransferase 1745943 1064551001669 IA1_08360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiosulfate:cyanide sulfurtransferase YP_008613471.1 1745629 R 1064551 CDS YP_008613472.1 549479460 complement(1746019..1746237) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein 1746237 1064551001670 IA1_08365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phage-shock protein YP_008613472.1 1746019 R 1064551 CDS YP_008613473.1 549479461 complement(1746260..1746619) 1 NC_022525.1 with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1746619 1064551001671 IA1_08370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613473.1 1746260 R 1064551 CDS YP_008613474.1 549479462 complement(1746619..1746843) 1 NC_022525.1 DNA-binding transcriptional regulator; acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein 1746843 pspB 1064551001672 pspB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phage-shock protein YP_008613474.1 1746619 R 1064551 CDS YP_008613475.1 549479463 complement(1746903..1747571) 1 NC_022525.1 involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein 1747571 1064551001673 IA1_08380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phage-shock protein YP_008613475.1 1746903 R 1064551 CDS YP_008613476.1 549479464 1747727..1748722 1 NC_022525.1 transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1748722 pspF 1064551001674 pspF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613476.1 1747727 D 1064551 CDS YP_008613477.1 549479465 1748834..1750483 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1750483 1064551001675 IA1_08390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter permease YP_008613477.1 1748834 D 1064551 CDS YP_008613478.1 549479466 1750480..1751445 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1751445 1064551001676 IA1_08395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter permease YP_008613478.1 1750480 D 1064551 CDS YP_008613479.1 549479467 1751432..1752322 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1752322 1064551001677 IA1_08400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter permease YP_008613479.1 1751432 D 1064551 CDS YP_008613480.1 549479468 1752322..1753314 1 NC_022525.1 involved in resistance to antimibial peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein 1753314 1064551001678 IA1_08405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter ATP-binding protein YP_008613480.1 1752322 D 1064551 CDS YP_008613481.1 549479469 1753316..1754122 1 NC_022525.1 with OppABCD is involved in the transport of oligopeptides; OppF and OppD are ATP-binding proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein 1754122 1064551001679 IA1_08410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter ATP-binding protein YP_008613481.1 1753316 D 1064551 CDS YP_008613482.1 549479470 complement(1755311..1756684) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1756684 1064551001681 IA1_08420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase YP_008613482.1 1755311 R 1064551 CDS YP_008613483.1 549479471 1757290..1758078 1 NC_022525.1 Catalyzes a key regulatory step in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-ACP reductase 1758078 1064551001682 IA1_08425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 enoyl-ACP reductase YP_008613483.1 1757290 D 1064551 CDS YP_008613484.1 549479472 1758278..1759411 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1759411 1064551001683 IA1_08430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613484.1 1758278 D 1064551 CDS YP_008613485.1 549479473 1759500..1761434 1 NC_022525.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; Derived by automated computational analysis using gene prediction method: Protein Homology.; exoribonuclease II 1761434 1064551001684 IA1_08435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exoribonuclease II YP_008613485.1 1759500 D 1064551 CDS YP_008613486.1 549479474 1761687..1763678 1 NC_022525.1 c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNase II stability modulator 1763678 1064551001685 IA1_08440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNase II stability modulator YP_008613486.1 1761687 D 1064551 CDS YP_008613487.1 549481973 1763800..1763979 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1763979 1064551001686 IA1_08445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613487.1 1763800 D 1064551 CDS YP_008613488.1 549479475 1764066..1764818 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 1764818 1064551001687 IA1_08450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DeoR family transcriptional regulator YP_008613488.1 1764066 D 1064551 CDS YP_008613489.1 549481974 1765077..1765295 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lipoprotein 1765295 1064551001688 IA1_08455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein YP_008613489.1 1765077 D 1064551 CDS YP_008613490.1 549479476 complement(1765415..1765741) 1 NC_022525.1 involved in start site selection during the initiation of translation; Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor Sui1 1765741 1064551001689 IA1_08460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 translation initiation factor Sui1 YP_008613490.1 1765415 R 1064551 CDS YP_008613491.1 549479477 complement(1765741..1766538) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; orotidine 5'-phosphate decarboxylase 1766538 1064551001690 IA1_08465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 orotidine 5'-phosphate decarboxylase YP_008613491.1 1765741 R 1064551 CDS YP_008613492.1 549479478 complement(1766669..1767838) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1767838 1064551001691 IA1_08470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613492.1 1766669 R 1064551 CDS YP_008613493.1 549479479 complement(1767845..1768153) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1768153 1064551001692 IA1_08475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613493.1 1767845 R 1064551 CDS YP_008613494.1 549479480 complement(1768303..1769067) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylglycerophosphatase B 1769067 1064551001693 IA1_08480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphatidylglycerophosphatase B YP_008613494.1 1768303 R 1064551 CDS YP_008613495.1 549481975 1769263..1769853 1 NC_022525.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GTP cyclohydrolase II 1769853 ribA 1064551001694 ribA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GTP cyclohydrolase II YP_008613495.1 1769263 D 1064551 CDS YP_008613496.1 549479481 complement(1769909..1772584) 1 NC_022525.1 Catalyzes the conversion of citrate to isocitrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; aconitate hydratase 1772584 1064551001695 IA1_08490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aconitate hydratase YP_008613496.1 1769909 R 1064551 CDS YP_008613497.1 549481976 complement(1772969..1773139) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1773139 1064551001696 IA1_08495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613497.1 1772969 R 1064551 CDS YP_008613498.1 549481977 complement(1773140..1773268) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1773268 1064551001697 IA1_08500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613498.1 1773140 R 1064551 CDS YP_008613499.1 549481978 complement(1773561..1774535) 1 NC_022525.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; CysB family transcriptional regulator 1774535 cysB 1064551001698 cysB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 CysB family transcriptional regulator YP_008613499.1 1773561 R 1064551 CDS YP_008613500.1 549479482 complement(1774947..1777544) 1 NC_022525.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; Derived by automated computational analysis using gene prediction method: Protein Homology.; topoisomerase I 1777544 1064551001699 IA1_08510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 topoisomerase I YP_008613500.1 1774947 R 1064551 CDS YP_008613501.1 549479483 1777947..1778198 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1778198 1064551001700 IA1_08515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613501.1 1777947 D 1064551 CDS YP_008613502.1 549479484 complement(1778240..1779286) 1 NC_022525.1 multicopy suppressor of htrA(degP); Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase 1779286 1064551001701 IA1_08520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidase YP_008613502.1 1778240 R 1064551 CDS YP_008613503.1 549479485 1779524..1780285 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxoacyl-ACP reductase 1780285 1064551001702 IA1_08525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxoacyl-ACP reductase YP_008613503.1 1779524 D 1064551 CDS YP_008613504.1 549479486 1780282..1780872 1 NC_022525.1 catalyzes the formation of adenosylcobalamide from cobinamide and the formation of coenzyme B12 from cob(I)alamin; Derived by automated computational analysis using gene prediction method: Protein Homology.; cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase 1780872 1064551001703 IA1_08530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase YP_008613504.1 1780282 D 1064551 CDS YP_008613505.1 549479487 complement(1780959..1781834) 1 NC_022525.1 catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridylate synthase B 1781834 1064551001704 IA1_08535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 23S rRNA pseudouridylate synthase B YP_008613505.1 1780959 R 1064551 CDS YP_008613506.1 549481979 complement(1781935..1782555) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1782555 1064551001705 IA1_08540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613506.1 1781935 R 1064551 CDS YP_008613507.1 549479488 complement(1782563..1783444) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine tRNA ribosyltransferase 1783444 1064551001706 IA1_08545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 S-adenosylmethionine tRNA ribosyltransferase YP_008613507.1 1782563 R 1064551 CDS YP_008613508.1 549479489 1783705..1785267 1 NC_022525.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; anthranilate synthase subunit I 1785267 1064551001707 IA1_08550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 anthranilate synthase subunit I YP_008613508.1 1783705 D 1064551 CDS YP_008613509.1 549479490 1785267..1786862 1 NC_022525.1 bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; anthranilate phosphoribosyltransferase 1786862 1064551001708 IA1_08555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 anthranilate phosphoribosyltransferase YP_008613509.1 1785267 D 1064551 CDS YP_008613510.1 549479491 1786866..1788224 1 NC_022525.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylanthranilate isomerase 1788224 1064551001709 IA1_08560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoribosylanthranilate isomerase YP_008613510.1 1786866 D 1064551 CDS YP_008613511.1 549479492 1788234..1789427 1 NC_022525.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan synthase subunit beta 1789427 1064551001710 IA1_08565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tryptophan synthase subunit beta YP_008613511.1 1788234 D 1064551 CDS YP_008613512.1 549479493 1789427..1790233 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan synthase subunit alpha 1790233 1064551001711 IA1_08570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tryptophan synthase subunit alpha YP_008613512.1 1789427 D 1064551 CDS YP_008613513.1 549479494 1790712..1790894 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1790894 1064551001712 IA1_08575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613513.1 1790712 D 1064551 CDS YP_008613514.1 549479495 1790984..1791487 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1791487 1064551001713 IA1_08580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613514.1 1790984 D 1064551 CDS YP_008613515.1 549479496 1791561..1792067 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1792067 1064551001714 IA1_08585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613515.1 1791561 D 1064551 CDS YP_008613516.1 549479497 1792087..1792965 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Mn-containing catalase 1792965 1064551001715 IA1_08590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Mn-containing catalase YP_008613516.1 1792087 D 1064551 CDS YP_008613517.1 549479498 complement(1793047..1793685) 1 NC_022525.1 receptor for colicin S4; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein W 1793685 1064551001716 IA1_08595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane protein W YP_008613517.1 1793047 R 1064551 CDS YP_008613518.1 549479499 1794023..1794427 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1794427 1064551001717 IA1_08600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613518.1 1794023 D 1064551 CDS YP_008613519.1 549479500 1794453..1795196 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1795196 1064551001718 IA1_08605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613519.1 1794453 D 1064551 CDS YP_008613520.1 549479501 1795253..1795792 1 NC_022525.1 Involved in cell division; probably involved in intracellular septation; Derived by automated computational analysis using gene prediction method: Protein Homology.; intracellular septation protein A 1795792 1064551001719 IA1_08610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 intracellular septation protein A YP_008613520.1 1795253 D 1064551 CDS YP_008613521.1 549479502 1795953..1796354 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase 1796354 1064551001720 IA1_08615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyl-CoA esterase YP_008613521.1 1795953 D 1064551 CDS YP_008613522.1 549479503 complement(1796413..1797144) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cell envelope protein TonB 1797144 1064551001721 IA1_08620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell envelope protein TonB YP_008613522.1 1796413 R 1064551 CDS YP_008613523.1 549479504 1797359..1797655 1 NC_022525.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1797655 1064551001722 IA1_08625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613523.1 1797359 D 1064551 CDS YP_008613524.1 549481980 complement(1797699..1797836) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1797836 1064551001723 IA1_08630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613524.1 1797699 R 1064551 CDS YP_008613525.1 549479505 1798015..1799475 1 NC_022525.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); Derived by automated computational analysis using gene prediction method: Protein Homology.; cardiolipin synthetase 1799475 cls 1064551001724 cls Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cardiolipin synthetase YP_008613525.1 1798015 D 1064551 CDS YP_008613526.1 549481981 1799509..1799838 1 NC_022525.1 highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dsDNA-mimic protein 1799838 1064551001725 IA1_08640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dsDNA-mimic protein YP_008613526.1 1799509 D 1064551 CDS YP_008613527.1 549479506 complement(1799886..1800722) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1800722 1064551001726 IA1_08645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008613527.1 1799886 R 1064551 CDS YP_008613528.1 549479507 complement(1800770..1801774) 1 NC_022525.1 with OppABCD is involved in the transport of oligopeptides; OppF and OppD are ATP-binding proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein 1801774 1064551001727 IA1_08650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter ATP-binding protein YP_008613528.1 1800770 R 1064551 CDS YP_008613529.1 549481982 complement(1801771..1802778) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; peptide ABC transporter ATP-binding protein 1802778 oppD 1064551001728 oppD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter ATP-binding protein YP_008613529.1 1801771 R 1064551 CDS YP_008613530.1 549479508 complement(1802790..1803698) 1 NC_022525.1 with OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1803698 1064551001729 IA1_08660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter permease YP_008613530.1 1802790 R 1064551 CDS YP_008613531.1 549479509 complement(1803713..1804633) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1804633 oppB 1064551001730 oppB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter permease YP_008613531.1 1803713 R 1064551 CDS YP_008613532.1 549479510 complement(1804755..1806386) 1 NC_022525.1 is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein 1806386 1064551001731 IA1_08670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter substrate-binding protein YP_008613532.1 1804755 R 1064551 CDS YP_008613533.1 549479511 complement(1807150..1807797) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1807797 1064551001732 IA1_08675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613533.1 1807150 R 1064551 CDS YP_008613534.1 549479512 1808274..1810952 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acetaldehyde dehydrogenase 1810952 1064551001733 IA1_08680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetaldehyde dehydrogenase YP_008613534.1 1808274 D 1064551 CDS YP_008613535.1 549479513 complement(1811149..1811766) 1 NC_022525.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidine kinase 1811766 1064551001734 IA1_08685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thymidine kinase YP_008613535.1 1811149 R 1064551 CDS YP_008613536.1 549479514 1812429..1812842 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 1812842 1064551001735 IA1_08690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-binding protein YP_008613536.1 1812429 D 1064551 CDS YP_008613537.1 549479515 complement(1812974..1813882) 1 NC_022525.1 together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UTP--glucose-1-phosphate uridylyltransferase subunit GalU 1813882 1064551001736 IA1_08695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UTP--glucose-1-phosphate uridylyltransferase subunit GalU YP_008613537.1 1812974 R 1064551 CDS YP_008613538.1 549479516 complement(1814085..1815098) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator 1815098 1064551001737 IA1_08700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 response regulator YP_008613538.1 1814085 R 1064551 CDS YP_008613539.1 549481983 complement(1815189..1816085) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1816085 1064551001738 IA1_08705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613539.1 1815189 R 1064551 CDS YP_008613540.1 549481984 1816304..1816663 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1816663 1064551001739 IA1_08710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613540.1 1816304 D 1064551 CDS YP_008613541.1 549479517 1816714..1817556 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; formyltetrahydrofolate deformylase 1817556 1064551001740 IA1_08715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formyltetrahydrofolate deformylase YP_008613541.1 1816714 D 1064551 CDS YP_008613542.1 549481985 complement(1818365..1819894) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1819894 1064551001743 IA1_08730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613542.1 1818365 R 1064551 CDS YP_008613543.1 549481986 1819930..1820094 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1820094 1064551001744 IA1_08735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613543.1 1819930 D 1064551 CDS YP_008613544.1 549479518 complement(1820136..1820813) 1 NC_022525.1 with NarGJH catalyzes the reduction of nitrate; the gamma subunit localizes NarGHI to the membrane; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit gamma 1820813 narI 1064551001745 narI Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrate reductase A subunit gamma YP_008613544.1 1820136 R 1064551 CDS YP_008613545.1 549479519 complement(1820813..1821523) 1 NC_022525.1 delta subunit of nitrate reductase 1; chaperone for the insertion of the molybdenum cofactor and assembly of nitrate reductase 1; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase molybdenum cofactor assembly chaperone NarJ 1821523 1064551001746 IA1_08745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrate reductase molybdenum cofactor assembly chaperone NarJ YP_008613545.1 1820813 R 1064551 CDS YP_008613546.1 549479520 complement(1821520..1823055) 1 NC_022525.1 with NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit beta 1823055 narH 1064551001747 narH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrate reductase A subunit beta YP_008613546.1 1821520 R 1064551 CDS YP_008613547.1 549479521 complement(1823052..1826795) 1 NC_022525.1 with NarYV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit alpha 1826795 narZ 1064551001748 narZ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrate reductase A subunit alpha YP_008613547.1 1823052 R 1064551 CDS YP_008613548.1 549479522 complement(1827184..1828581) 1 NC_022525.1 involved in the transport of nitrate and nitrite; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate transporter 1828581 1064551001749 IA1_08760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrate transporter YP_008613548.1 1827184 R 1064551 CDS YP_008613549.1 549479523 1828922..1830718 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate/nitrite sensor protein NarX 1830718 1064551001750 IA1_08765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrate/nitrite sensor protein NarX YP_008613549.1 1828922 D 1064551 CDS YP_008613550.1 549479524 1830711..1831361 1 NC_022525.1 two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1831361 1064551001751 IA1_08770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613550.1 1830711 D 1064551 CDS YP_008613551.1 549479525 complement(1831362..1832891) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; invasin 1832891 1064551001752 IA1_08775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 invasin YP_008613551.1 1831362 R 1064551 CDS YP_008613552.1 549479526 1832963..1833316 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1833316 1064551001753 IA1_08780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613552.1 1832963 D 1064551 CDS YP_008613553.1 549479527 complement(1833396..1833653) 1 NC_022525.1 in Escherichia coli this protein putatively regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transport regulator 1833653 chaB 1064551001754 chaB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cation transport regulator YP_008613553.1 1833396 R 1064551 CDS YP_008613554.1 549479528 1833893..1834993 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 1834993 1064551001755 IA1_08790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sodium:proton antiporter YP_008613554.1 1833893 D 1064551 CDS YP_008613555.1 549479529 complement(1835047..1835901) 1 NC_022525.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-dehydro-3-deoxyphosphooctonate aldolase 1835901 1064551001756 IA1_08795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-dehydro-3-deoxyphosphooctonate aldolase YP_008613555.1 1835047 R 1064551 CDS YP_008613556.1 549479530 complement(1835939..1836748) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1836748 1064551001757 IA1_08800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613556.1 1835939 R 1064551 CDS YP_008613557.1 549479531 complement(1836752..1837141) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1837141 1064551001758 IA1_08805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613557.1 1836752 R 1064551 CDS YP_008613558.1 549479532 complement(1837138..1837971) 1 NC_022525.1 HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; Derived by automated computational analysis using gene prediction method: Protein Homology.; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1837971 1064551001759 IA1_08810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_008613558.1 1837138 R 1064551 CDS YP_008613559.1 549479533 complement(1837971..1839053) 1 NC_022525.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 1 1839053 prfA 1064551001760 prfA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide chain release factor 1 YP_008613559.1 1837971 R 1064551 CDS YP_008613560.1 549481987 complement(1839094..1840350) 1 NC_022525.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glutamyl-tRNA reductase 1840350 hemA 1064551001761 hemA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamyl-tRNA reductase YP_008613560.1 1839094 R 1064551 CDS YP_008613561.1 549479534 1840664..1841287 1 NC_022525.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein LolB 1841287 lolB 1064551001762 lolB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane lipoprotein LolB YP_008613561.1 1840664 D 1064551 CDS YP_008613562.1 549479535 1841284..1842135 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; kinase 1842135 1064551001763 IA1_08830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 kinase YP_008613562.1 1841284 D 1064551 CDS YP_008613563.1 549479536 1842383..1843348 1 NC_022525.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose-phosphate pyrophosphokinase 1843348 1064551001764 IA1_08835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribose-phosphate pyrophosphokinase YP_008613563.1 1842383 D 1064551 CDS YP_008613564.1 549479537 1843473..1845158 1 NC_022525.1 role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1845158 1064551001765 IA1_08840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008613564.1 1843473 D 1064551 CDS YP_008613565.1 549479538 complement(1845203..1845481) 1 NC_022525.1 YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1845481 1064551001766 IA1_08845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613565.1 1845203 R 1064551 CDS YP_008613566.1 549479539 1845757..1846341 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-tRNA hydrolase 1846341 1064551001767 IA1_08850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidyl-tRNA hydrolase YP_008613566.1 1845757 D 1064551 CDS YP_008613567.1 549479540 1846458..1847549 1 NC_022525.1 EngD; translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein YchF 1847549 ychF 1064551001768 ychF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GTP-binding protein YchF YP_008613567.1 1846458 D 1064551 CDS YP_008613568.1 549479541 complement(1847708..1848973) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1848973 1064551001769 IA1_08860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613568.1 1847708 R 1064551 CDS YP_008613569.1 549479542 1849468..1850586 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1850586 1064551001770 IA1_08865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase YP_008613569.1 1849468 D 1064551 CDS YP_008613570.1 549479543 1850583..1852376 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1852376 1064551001771 IA1_08870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase YP_008613570.1 1850583 D 1064551 CDS YP_008613571.1 549479544 1852395..1853126 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1 b-type cytochrome subunit 1853126 1064551001772 IA1_08875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase 1 b-type cytochrome subunit YP_008613571.1 1852395 D 1064551 CDS YP_008613572.1 549479545 1853123..1853719 1 NC_022525.1 HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1 maturation protease 1853719 1064551001773 IA1_08880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase 1 maturation protease YP_008613572.1 1853123 D 1064551 CDS YP_008613573.1 549479546 1853709..1854113 1 NC_022525.1 involved in processing hydrogenase proteins HyaA and HyaB; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase-1 operon protein HyaE 1854113 1064551001774 IA1_08885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase-1 operon protein HyaE YP_008613573.1 1853709 D 1064551 CDS YP_008613574.1 549479547 1854110..1854958 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase-1 operon protein HyaF 1854958 1064551001775 IA1_08890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase-1 operon protein HyaF YP_008613574.1 1854110 D 1064551 CDS YP_008613575.1 549479548 1855033..1856577 1 NC_022525.1 part of the aerobic respiratory chain; catalyzes the ubiquinol to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit I 1856577 1064551001776 IA1_08895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome BD oxidase subunit I YP_008613575.1 1855033 D 1064551 CDS YP_008613576.1 549479549 1856589..1857725 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit II 1857725 1064551001777 IA1_08900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome BD oxidase subunit II YP_008613576.1 1856589 D 1064551 CDS YP_008613577.1 549481988 1857738..1857827 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1857827 1064551001778 IA1_08905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613577.1 1857738 D 1064551 CDS YP_008613578.1 549479550 1858171..1859496 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate dehydrogenase 1859496 1064551001779 IA1_08910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamate dehydrogenase YP_008613578.1 1858171 D 1064551 CDS YP_008613579.1 549479551 1859710..1861422 1 NC_022525.1 periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalase 1861422 treA 1064551001780 treA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 trehalase YP_008613579.1 1859710 D 1064551 CDS YP_008613580.1 549479552 complement(1861485..1861739) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1861739 1064551001781 IA1_08920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613580.1 1861485 R 1064551 CDS YP_008613581.1 549479553 1861908..1862642 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar brake protein YcgR 1862642 1064551001782 IA1_08925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar brake protein YcgR YP_008613581.1 1861908 D 1064551 CDS YP_008613582.1 549479554 complement(1862656..1863267) 1 NC_022525.1 catalyzes the cleavage of 1-4 beta-glycoside linkaged between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic murein endotransglycosylase E 1863267 emtA 1064551001783 emtA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lytic murein endotransglycosylase E YP_008613582.1 1862656 R 1064551 CDS YP_008613583.1 549479555 1863438..1864352 1 NC_022525.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L,D-carboxypeptidase A 1864352 ldcA 1064551001784 ldcA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L,D-carboxypeptidase A YP_008613583.1 1863438 D 1064551 CDS YP_008613584.1 549479556 1864449..1866182 1 NC_022525.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium:proton antiporter 1866182 cvrA 1064551001785 cvrA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 potassium:proton antiporter YP_008613584.1 1864449 D 1064551 CDS YP_008613585.1 549479557 complement(1866245..1867315) 1 NC_022525.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine racemase 1867315 1064551001786 IA1_08945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alanine racemase YP_008613585.1 1866245 R 1064551 CDS YP_008613586.1 549479558 complement(1867329..1868627) 1 NC_022525.1 catalyzes the oxidative deamination of D-amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-amino acid dehydrogenase small subunit 1868627 1064551001787 IA1_08950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-amino acid dehydrogenase small subunit YP_008613586.1 1867329 R 1064551 CDS YP_008613587.1 549481989 complement(1868775..1868885) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1868885 1064551001788 IA1_08955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613587.1 1868775 R 1064551 CDS YP_008613588.1 549481990 1868950..1870482 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; SpoVR family protein 1870482 1064551001789 IA1_08960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 SpoVR family protein YP_008613588.1 1868950 D 1064551 CDS YP_008613589.1 549479559 complement(1870529..1871248) 1 NC_022525.1 Multifunctional regulator of fatty acid metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; fatty acid metabolism regulator 1871248 1064551001790 IA1_08965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fatty acid metabolism regulator YP_008613589.1 1870529 R 1064551 CDS YP_008613590.1 549479560 1871468..1873012 1 NC_022525.1 involved in regulation of intracellular pH under alkaline conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 1873012 nhaB 1064551001791 nhaB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sodium:proton antiporter YP_008613590.1 1871468 D 1064551 CDS YP_008613591.1 549479561 1873154..1873684 1 NC_022525.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; disulfide bond formation protein DsbB 1873684 1064551001792 IA1_08975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 disulfide bond formation protein DsbB YP_008613591.1 1873154 D 1064551 CDS YP_008613592.1 549479562 1873793..1874134 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tellurite resistance protein B 1874134 1064551001793 IA1_08980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tellurite resistance protein B YP_008613592.1 1873793 D 1064551 CDS YP_008613593.1 549479563 complement(1874206..1874379) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; gns 1874379 1064551001794 IA1_08985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 gns YP_008613593.1 1874206 R 1064551 CDS YP_008613594.1 549481991 complement(1874752..1874850) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1874850 1064551001795 IA1_08990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613594.1 1874752 R 1064551 CDS YP_008613595.1 549479564 complement(1875060..1875521) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1875521 1064551001796 IA1_08995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613595.1 1875060 R 1064551 CDS YP_008613596.1 549479565 complement(1875599..1876276) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1876276 1064551001797 IA1_09000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613596.1 1875599 R 1064551 CDS YP_008613597.1 549479566 complement(1876308..1876640) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1876640 1064551001798 IA1_09005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613597.1 1876308 R 1064551 CDS YP_008613598.1 549479567 1876727..1877434 1 NC_022525.1 blocks the formation of polar Z-ring septums; Derived by automated computational analysis using gene prediction method: Protein Homology.; septum formation inhibitor 1877434 minC 1064551001799 minC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 septum formation inhibitor YP_008613598.1 1876727 D 1064551 CDS YP_008613599.1 549479568 1877458..1878270 1 NC_022525.1 ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division inhibitor MinD 1878270 1064551001800 IA1_09015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division inhibitor MinD YP_008613599.1 1877458 D 1064551 CDS YP_008613600.1 549479569 1878274..1878540 1 NC_022525.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division topological specificity factor MinE 1878540 minE 1064551001801 minE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division topological specificity factor MinE YP_008613600.1 1878274 D 1064551 CDS YP_008613601.1 549479570 complement(1878662..1879789) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease D 1879789 1064551001802 IA1_09025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonuclease D YP_008613601.1 1878662 R 1064551 CDS YP_008613602.1 549479571 complement(1879862..1881580) 1 NC_022525.1 Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.; long-chain fatty acid--CoA ligase 1881580 1064551001803 IA1_09030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 long-chain fatty acid--CoA ligase YP_008613602.1 1879862 R 1064551 CDS YP_008613603.1 549479572 complement(1881752..1882333) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1882333 1064551001804 IA1_09035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613603.1 1881752 R 1064551 CDS YP_008613604.1 549479573 complement(1882405..1883100) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1883100 1064551001805 IA1_09040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613604.1 1882405 R 1064551 CDS YP_008613605.1 549479574 complement(1883158..1885068) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent helicase 1885068 1064551001806 IA1_09045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-dependent helicase YP_008613605.1 1883158 R 1064551 CDS YP_008613606.1 549479575 1885200..1885544 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; endoribonuclease L-PSP 1885544 1064551001807 IA1_09050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endoribonuclease L-PSP YP_008613606.1 1885200 D 1064551 CDS YP_008613607.1 549479576 complement(1885550..1885729) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1885729 1064551001808 IA1_09055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613607.1 1885550 R 1064551 CDS YP_008613608.1 549479577 1885810..1887174 1 NC_022525.1 para-aminobenzoate synthase component 1; catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and L-glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminodeoxychorismate synthase subunit I 1887174 pabB 1064551001809 pabB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aminodeoxychorismate synthase subunit I YP_008613608.1 1885810 D 1064551 CDS YP_008613609.1 549479578 1887178..1887756 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; NUDIX hydrolase 1887756 1064551001810 IA1_09065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NUDIX hydrolase YP_008613609.1 1887178 D 1064551 CDS YP_008613610.1 549479579 1888020..1889384 1 NC_022525.1 catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-serine dehydratase 1889384 1064551001811 IA1_09070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-serine dehydratase YP_008613610.1 1888020 D 1064551 CDS YP_008613611.1 549479580 1889522..1891123 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate phosphodiesterase 1891123 1064551001812 IA1_09075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diguanylate phosphodiesterase YP_008613611.1 1889522 D 1064551 CDS YP_008613612.1 549479581 complement(1891145..1892704) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1892704 1064551001813 IA1_09080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613612.1 1891145 R 1064551 CDS YP_008613613.1 549479582 1893177..1894145 1 NC_022525.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; subunit IIA transfers a phosphoryl group to subunit IIB; subunit IIB transfers the phosphoryl group to the substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IIAB 1894145 1064551001814 IA1_09085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS mannose transporter subunit IIAB YP_008613613.1 1893177 D 1064551 CDS YP_008613614.1 549479583 1894198..1894998 1 NC_022525.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IIC 1894998 1064551001815 IA1_09090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS mannose transporter subunit IIC YP_008613614.1 1894198 D 1064551 CDS YP_008613615.1 549479584 1895002..1895862 1 NC_022525.1 hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IID 1895862 1064551001816 IA1_09095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS mannose transporter subunit IID YP_008613615.1 1895002 D 1064551 CDS YP_008613616.1 549481992 1895920..1896378 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1896378 1064551001817 IA1_09100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613616.1 1895920 D 1064551 CDS YP_008613617.1 549479585 1896734..1897354 1 NC_022525.1 membrane protein YebN; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1897354 1064551001818 IA1_09105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613617.1 1896734 D 1064551 CDS YP_008613618.1 549479586 complement(1897351..1898160) 1 NC_022525.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 1898160 rrmA 1064551001819 rrmA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 23S rRNA methyltransferase YP_008613618.1 1897351 R 1064551 CDS YP_008613619.1 549479587 complement(1898226..1899971) 1 NC_022525.1 penicillin-binding protein 3; transpeptidase involved in septal peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsI 1899971 1064551001820 IA1_09115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsI YP_008613619.1 1898226 R 1064551 CDS YP_008613620.1 549479588 complement(1900191..1900400) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA chaperone/anti-terminator 1900400 1064551001821 IA1_09120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA chaperone/anti-terminator YP_008613620.1 1900191 R 1064551 CDS YP_008613621.1 549481993 complement(1901205..1901438) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1901438 1064551001822 IA1_09125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613621.1 1901205 R 1064551 CDS YP_008613622.1 549481994 complement(1901563..1901706) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PhoPQ regulatory protein 1901706 1064551001823 IA1_09130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PhoPQ regulatory protein YP_008613622.1 1901563 R 1064551 CDS YP_008613623.1 549479589 1901864..1902103 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1902103 1064551001824 IA1_09135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613623.1 1901864 D 1064551 CDS YP_008613624.1 549481995 complement(1902199..1902300) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1902300 1064551001825 IA1_09140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613624.1 1902199 R 1064551 CDS YP_008613625.1 549479590 complement(1902315..1903106) 1 NC_022525.1 regulates the genes involved in 2-keto-3-deoxy gluconate transport and catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1903106 1064551001826 IA1_09145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613625.1 1902315 R 1064551 CDS YP_008613626.1 549479591 1903282..1904655 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug MFS transporter 1904655 1064551001827 IA1_09150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug MFS transporter YP_008613626.1 1903282 D 1064551 CDS YP_008613627.1 549479592 complement(1904703..1905584) 1 NC_022525.1 metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein HtpX 1905584 1064551001828 IA1_09155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heat shock protein HtpX YP_008613627.1 1904703 R 1064551 CDS YP_008613628.1 549479593 complement(1905778..1907826) 1 NC_022525.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxy-terminal protease 1907826 1064551001829 IA1_09160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carboxy-terminal protease YP_008613628.1 1905778 R 1064551 CDS YP_008613629.1 549479594 complement(1907846..1908532) 1 NC_022525.1 affects solute and DNA transport through an unknown mechanism; Derived by automated computational analysis using gene prediction method: Protein Homology.; prop expression regulator 1908532 1064551001830 IA1_09165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 prop expression regulator YP_008613629.1 1907846 R 1064551 CDS YP_008613630.1 549481996 complement(1908630..1909127) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Free methionine-R-sulfoxide reductase 1909127 1064551001831 IA1_09170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Free methionine-R-sulfoxide reductase YP_008613630.1 1908630 R 1064551 CDS YP_008613631.1 549479595 1909256..1910539 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1910539 1064551001832 IA1_09175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613631.1 1909256 D 1064551 CDS YP_008613632.1 549479596 1910502..1913141 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1913141 1064551001833 IA1_09180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613632.1 1910502 D 1064551 CDS YP_008613633.1 549479597 1913117..1914658 1 NC_022525.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; rRNA methyltransferase 1914658 yebU 1064551001834 yebU Salmonella enterica subsp. enterica serovar Thompson str. RM6836 rRNA methyltransferase YP_008613633.1 1913117 D 1064551 CDS YP_008613634.1 549479598 1914773..1915012 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1915012 1064551001835 IA1_09190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613634.1 1914773 D 1064551 CDS YP_008613635.1 549481997 1915123..1915314 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1915314 1064551001836 IA1_09195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613635.1 1915123 D 1064551 CDS YP_008613636.1 549479599 complement(1915333..1915983) 1 NC_022525.1 Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine protein phosphatase 1915983 pphA 1064551001837 pphA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 serine/threonine protein phosphatase YP_008613636.1 1915333 R 1064551 CDS YP_008613637.1 549479600 complement(1916207..1916371) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1916371 1064551001838 IA1_09205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613637.1 1916207 R 1064551 CDS YP_008613638.1 549481998 complement(1916656..1917378) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1917378 1064551001839 IA1_09210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613638.1 1916656 R 1064551 CDS YP_008613639.1 549479601 1918062..1918457 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1918457 1064551001840 IA1_09215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613639.1 1918062 D 1064551 CDS YP_008613640.1 549479602 1918787..1919263 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1919263 1064551001841 IA1_09220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613640.1 1918787 D 1064551 CDS YP_008613641.1 549481999 complement(1919636..1920055) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; blasticidin S-acetyltransferase 1920055 1064551001842 IA1_09225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 blasticidin S-acetyltransferase YP_008613641.1 1919636 R 1064551 CDS YP_008613642.1 549482000 1920601..1920747 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1920747 1064551001843 IA1_09230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613642.1 1920601 D 1064551 CDS YP_008613643.1 549482001 complement(1921337..1921483) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 1921483 1064551001844 IA1_09235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transposase YP_008613643.1 1921337 R 1064551 CDS YP_008613644.1 549482002 1922503..1922832 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 1922832 1064551001845 IA1_09240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 integrase YP_008613644.1 1922503 D 1064551 CDS YP_008613645.1 549482003 complement(1923098..1923316) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1923316 1064551001846 IA1_09245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613645.1 1923098 R 1064551 CDS YP_008613646.1 549482004 1923916..1924830 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; drug/metabolite transporter DMT permease 1924830 1064551001847 IA1_09250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 drug/metabolite transporter DMT permease YP_008613646.1 1923916 D 1064551 CDS YP_008613647.1 549482005 1924963..1925121 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1925121 1064551001848 IA1_09255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613647.1 1924963 D 1064551 CDS YP_008613648.1 549482006 1925131..1925745 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; disulfide bond formation protein 1925745 1064551001849 IA1_09260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 disulfide bond formation protein YP_008613648.1 1925131 D 1064551 CDS YP_008613649.1 549482007 complement(1926893..1927018) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arsenical pump membrane protein 1927018 1064551001850 IA1_09265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arsenical pump membrane protein YP_008613649.1 1926893 R 1064551 CDS YP_008613650.1 549482008 complement(1928919..1929182) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA breaking-rejoining protein 1929182 1064551001851 IA1_09280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA breaking-rejoining protein YP_008613650.1 1928919 R 1064551 CDS YP_008613651.1 549482009 1929490..1929657 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lytic enzyme 1929657 1064551001852 IA1_09285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lytic enzyme YP_008613651.1 1929490 D 1064551 CDS YP_008613652.1 549479603 complement(1929914..1930447) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1930447 1064551001853 IA1_09290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613652.1 1929914 R 1064551 CDS YP_008613653.1 549479604 1930762..1931868 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VIII 1931868 1064551001855 IA1_09300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exodeoxyribonuclease VIII YP_008613653.1 1930762 D 1064551 CDS YP_008613654.1 549482010 1931865..1932944 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 1932944 1064551001856 IA1_09305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 integrase YP_008613654.1 1931865 D 1064551 CDS YP_008613655.1 549479605 complement(1933327..1933680) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1933680 1064551001857 IA1_09310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613655.1 1933327 R 1064551 CDS YP_008613656.1 549479606 complement(1933697..1934572) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1934572 1064551001858 IA1_09315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613656.1 1933697 R 1064551 CDS YP_008613657.1 549479607 complement(1934573..1934947) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1934947 1064551001859 IA1_09320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613657.1 1934573 R 1064551 CDS YP_008613658.1 549479608 1935085..1935315 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit theta 1935315 1064551001860 IA1_09325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA polymerase III subunit theta YP_008613658.1 1935085 D 1064551 CDS YP_008613659.1 549479609 1935423..1936079 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon-nitrogen family hydrolase 1936079 1064551001861 IA1_09330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbon-nitrogen family hydrolase YP_008613659.1 1935423 D 1064551 CDS YP_008613660.1 549479610 1936103..1936801 1 NC_022525.1 3'-5' exonuclease activity on single or double-strand DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease X 1936801 1064551001862 IA1_09335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exodeoxyribonuclease X YP_008613660.1 1936103 D 1064551 CDS YP_008613661.1 549479611 complement(1936838..1938889) 1 NC_022525.1 PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 1938889 1064551001863 IA1_09340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protease YP_008613661.1 1936838 R 1064551 CDS YP_008613662.1 549479612 complement(1939102..1939761) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1939761 1064551001864 IA1_09345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613662.1 1939102 R 1064551 CDS YP_008613663.1 549479613 complement(1939855..1940208) 1 NC_022525.1 secreted protein; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1940208 1064551001865 IA1_09350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613663.1 1939855 R 1064551 CDS YP_008613664.1 549479614 complement(1940276..1940566) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA damage-inducible protein YebG 1940566 1064551001866 IA1_09355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA damage-inducible protein YebG YP_008613664.1 1940276 R 1064551 CDS YP_008613665.1 549479615 1940697..1941875 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylglycinamide formyltransferase 1941875 1064551001867 IA1_09360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoribosylglycinamide formyltransferase YP_008613665.1 1940697 D 1064551 CDS YP_008613666.1 549482011 1941875..1941970 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1941970 1064551001868 IA1_09365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613666.1 1941875 D 1064551 CDS YP_008613667.1 549479616 complement(1941975..1942616) 1 NC_022525.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ketohydroxyglutarate aldolase 1942616 1064551001869 IA1_09370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ketohydroxyglutarate aldolase YP_008613667.1 1941975 R 1064551 CDS YP_008613668.1 549479617 complement(1942654..1944465) 1 NC_022525.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphogluconate dehydratase 1944465 1064551001870 IA1_09375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphogluconate dehydratase YP_008613668.1 1942654 R 1064551 CDS YP_008613669.1 549479618 complement(1944700..1946175) 1 NC_022525.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-6-phosphate 1-dehydrogenase 1946175 1064551001871 IA1_09380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucose-6-phosphate 1-dehydrogenase YP_008613669.1 1944700 R 1064551 CDS YP_008613670.1 549479619 1946517..1947386 1 NC_022525.1 Represses the expression of the zwf, eda, glp and gap; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1947386 1064551001872 IA1_09385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613670.1 1946517 D 1064551 CDS YP_008613671.1 549479620 1947510..1948952 1 NC_022525.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate kinase 1948952 1064551001873 IA1_09390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyruvate kinase YP_008613671.1 1947510 D 1064551 CDS YP_008613672.1 549479621 complement(1949025..1949996) 1 NC_022525.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 1949996 1064551001874 IA1_09395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_008613672.1 1949025 R 1064551 CDS YP_008613673.1 549479622 complement(1950121..1951440) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase 1951440 1064551001875 IA1_09400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidase YP_008613673.1 1950121 R 1064551 CDS YP_008613674.1 549479623 complement(1951456..1952400) 1 NC_022525.1 involved in transport of zinc(II) with ZnuA and C; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc ABC transporter substrate-binding protein 1952400 znuA 1064551001876 znuA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 zinc ABC transporter substrate-binding protein YP_008613674.1 1951456 R 1064551 CDS YP_008613675.1 549482012 1952479..1953234 1 NC_022525.1 involved in transport of zinc(II) with ZnuA and C; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; zinc transporter 1953234 znuC 1064551001877 znuC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 zinc transporter YP_008613675.1 1952479 D 1064551 CDS YP_008613676.1 549479624 1953231..1954016 1 NC_022525.1 involved in transport of zinc(II) with ZnuA and C; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter 1954016 znuB 1064551001878 znuB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 zinc transporter YP_008613676.1 1953231 D 1064551 CDS YP_008613677.1 549479625 complement(1954095..1955105) 1 NC_022525.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction DNA helicase RuvB 1955105 ruvB 1064551001879 ruvB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Holliday junction DNA helicase RuvB YP_008613677.1 1954095 R 1064551 CDS YP_008613678.1 549479626 complement(1955114..1955725) 1 NC_022525.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction DNA helicase RuvA 1955725 ruvA 1064551001880 ruvA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Holliday junction DNA helicase RuvA YP_008613678.1 1955114 R 1064551 CDS YP_008613679.1 549482013 1956058..1957041 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1957041 1064551001881 IA1_09430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613679.1 1956058 D 1064551 CDS YP_008613680.1 549479627 1957709..1958308 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1958308 1064551001882 IA1_09435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613680.1 1957709 D 1064551 CDS YP_008613681.1 549479628 complement(1958310..1958831) 1 NC_022525.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction resolvase 1958831 ruvC 1064551001883 ruvC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Holliday junction resolvase YP_008613681.1 1958310 R 1064551 CDS YP_008613682.1 549479629 complement(1958868..1959608) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1959608 1064551001884 IA1_09445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613682.1 1958868 R 1064551 CDS YP_008613683.1 549479630 complement(1959638..1960090) 1 NC_022525.1 catalyzes the formation of dihydroneopterin phosphate from dihydroneopterin triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroneopterin triphosphate pyrophosphatase 1960090 nudB 1064551001885 nudB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydroneopterin triphosphate pyrophosphatase YP_008613683.1 1959638 R 1064551 CDS YP_008613684.1 549479631 complement(1960193..1961965) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartyl-tRNA synthetase 1961965 1064551001886 IA1_09455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aspartyl-tRNA synthetase YP_008613684.1 1960193 R 1064551 CDS YP_008613685.1 549479632 1962290..1962856 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 1962856 1064551001887 IA1_09460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrolase YP_008613685.1 1962290 D 1064551 CDS YP_008613686.1 549479633 1962853..1963671 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1963671 1064551001888 IA1_09465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613686.1 1962853 D 1064551 CDS YP_008613687.1 549479634 1963724..1964119 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1964119 1064551001889 IA1_09470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613687.1 1963724 D 1064551 CDS YP_008613688.1 549482014 1964160..1964903 1 NC_022525.1 catalyzes the conversion of 5-methoxyuridine to uridine-5-oxyacetic acid in tRNA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; rRNA cytosine-C5-methyltransferase 1964903 1064551001890 IA1_09475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 rRNA cytosine-C5-methyltransferase YP_008613688.1 1964160 D 1064551 CDS YP_008613689.1 549482015 1964900..1965871 1 NC_022525.1 catalyzes the conversion of 5-hydroxyuridine to 5-methoxyuridine in tRNA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tRNA methyltransferase 1965871 1064551001891 IA1_09480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA methyltransferase YP_008613689.1 1964900 D 1064551 CDS YP_008613690.1 549479635 complement(1966107..1966853) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; copper homeostasis protein CutC 1966853 1064551001892 IA1_09485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 copper homeostasis protein CutC YP_008613690.1 1966107 R 1064551 CDS YP_008613691.1 549479636 complement(1966873..1967442) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1967442 1064551001893 IA1_09490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613691.1 1966873 R 1064551 CDS YP_008613692.1 549479637 1967679..1969412 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; arginyl-tRNA synthetase 1969412 1064551001894 IA1_09495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginyl-tRNA synthetase YP_008613692.1 1967679 D 1064551 CDS YP_008613693.1 549479638 1969601..1971472 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 2 1971472 1064551001895 IA1_09500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 penicillin-binding protein 2 YP_008613693.1 1969601 D 1064551 CDS YP_008613694.1 549479639 complement(1971526..1972665) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl hydrolase family 88 1972665 1064551001896 IA1_09505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycosyl hydrolase family 88 YP_008613694.1 1971526 R 1064551 CDS YP_008613695.1 549479640 complement(1972902..1973294) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar protein flhE 1973294 1064551001897 IA1_09510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar protein flhE YP_008613695.1 1972902 R 1064551 CDS YP_008613696.1 549479641 complement(1973294..1975372) 1 NC_022525.1 membrane protein involved in the flagellar export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FlhA 1975372 flhA 1064551001898 flhA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar biosynthesis protein FlhA YP_008613696.1 1973294 R 1064551 CDS YP_008613697.1 549479642 complement(1975365..1976516) 1 NC_022525.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FlhB 1976516 flhB 1064551001899 flhB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar biosynthesis protein FlhB YP_008613697.1 1975365 R 1064551 CDS YP_008613698.1 549479643 complement(1976710..1977354) 1 NC_022525.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheZ 1977354 1064551001900 IA1_09525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chemotaxis protein CheZ YP_008613698.1 1976710 R 1064551 CDS YP_008613699.1 549479644 complement(1977365..1977754) 1 NC_022525.1 chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheY 1977754 1064551001901 IA1_09530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chemotaxis protein CheY YP_008613699.1 1977365 R 1064551 CDS YP_008613700.1 549479645 complement(1977772..1978821) 1 NC_022525.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein 1978821 1064551001902 IA1_09535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chemotaxis protein YP_008613700.1 1977772 R 1064551 CDS YP_008613701.1 549479646 complement(1978818..1979684) 1 NC_022525.1 methylates the MCP; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheR 1979684 1064551001903 IA1_09540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chemotaxis protein CheR YP_008613701.1 1978818 R 1064551 CDS YP_008613702.1 549479647 complement(1979838..1981499) 1 NC_022525.1 serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein 1981499 1064551001904 IA1_09545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methyl-accepting chemotaxis protein YP_008613702.1 1979838 R 1064551 CDS YP_008613703.1 549479648 complement(1981736..1982239) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; purine-binding chemotaxis protein 1982239 1064551001905 IA1_09550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 purine-binding chemotaxis protein YP_008613703.1 1981736 R 1064551 CDS YP_008613704.1 549479649 complement(1982260..1984275) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheA 1984275 1064551001906 IA1_09555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chemotaxis protein CheA YP_008613704.1 1982260 R 1064551 CDS YP_008613705.1 549479650 complement(1984280..1985209) 1 NC_022525.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor protein MotB 1985209 motB 1064551001907 motB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar motor protein MotB YP_008613705.1 1984280 R 1064551 CDS YP_008613706.1 549479651 complement(1985206..1986093) 1 NC_022525.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor protein MotA 1986093 1064551001908 IA1_09565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar motor protein MotA YP_008613706.1 1985206 R 1064551 CDS YP_008613707.1 549479652 complement(1986219..1986803) 1 NC_022525.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 1986803 1064551001909 IA1_09570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 AraC family transcriptional regulator YP_008613707.1 1986219 R 1064551 CDS YP_008613708.1 549482016 complement(1986800..1987141) 1 NC_022525.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional activator FlhD 1987141 1064551001910 IA1_09575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional activator FlhD YP_008613708.1 1986800 R 1064551 CDS YP_008613709.1 549479653 1987937..1988365 1 NC_022525.1 ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein C 1988365 1064551001911 IA1_09580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 universal stress protein C YP_008613709.1 1987937 D 1064551 CDS YP_008613710.1 549479654 complement(1988383..1989804) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose-6-phosphate synthase 1989804 1064551001912 IA1_09585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 trehalose-6-phosphate synthase YP_008613710.1 1988383 R 1064551 CDS YP_008613711.1 549479655 complement(1989779..1990582) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose-phosphatase 1990582 1064551001913 IA1_09590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 trehalose-phosphatase YP_008613711.1 1989779 R 1064551 CDS YP_008613712.1 549482017 complement(1991098..1991655) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; thiamine biogenesis protein ThiJ 1991655 1064551001914 IA1_09595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiamine biogenesis protein ThiJ YP_008613712.1 1991098 R 1064551 CDS YP_008613713.1 549482018 complement(1991910..1992005) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1992005 1064551001915 IA1_09600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613713.1 1991910 R 1064551 CDS YP_008613714.1 549479656 1992206..1992709 1 NC_022525.1 ferritin B; required for virulence in Salmonella; may be involved in repair of damaged Fe-S clusters; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferritin 1992709 1064551001916 IA1_09605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferritin YP_008613714.1 1992206 D 1064551 CDS YP_008613715.1 549479657 complement(1992888..1993526) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1993526 1064551001917 IA1_09610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613715.1 1992888 R 1064551 CDS YP_008613716.1 549479658 1993782..1994117 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1994117 1064551001918 IA1_09615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613716.1 1993782 D 1064551 CDS YP_008613717.1 549479659 1994357..1994854 1 NC_022525.1 cytoplasmic iron storage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferritin 1994854 1064551001919 IA1_09620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferritin YP_008613717.1 1994357 D 1064551 CDS YP_008613718.1 549479660 complement(1994900..1995139) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1995139 1064551001920 IA1_09625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613718.1 1994900 R 1064551 CDS YP_008613719.1 549479661 1995309..1996577 1 NC_022525.1 tyrosine specific permease; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine transporter TyrP 1996577 1064551001921 IA1_09630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tyrosine transporter TyrP YP_008613719.1 1995309 D 1064551 CDS YP_008613720.1 549479662 complement(1996652..1997317) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1997317 1064551001922 IA1_09635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613720.1 1996652 R 1064551 CDS YP_008613721.1 549482019 complement(1998094..1999527) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cell wall-associated hydrolase 1999527 1064551001924 IA1_09645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell wall-associated hydrolase YP_008613721.1 1998094 R 1064551 CDS YP_008613722.1 549479663 complement(2000779..2001327) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylglycerophosphate synthetase 2001327 1064551001928 IA1_09665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphatidylglycerophosphate synthetase YP_008613722.1 2000779 R 1064551 CDS YP_008613723.1 549479664 complement(2001384..2003216) 1 NC_022525.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit C 2003216 uvrC 1064551001929 uvrC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 excinuclease ABC subunit C YP_008613723.1 2001384 R 1064551 CDS YP_008613724.1 549479665 complement(2003213..2003869) 1 NC_022525.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator 2003869 sirA 1064551001930 sirA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 response regulator YP_008613724.1 2003213 R 1064551 CDS YP_008613725.1 549482020 2004181..2004336 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2004336 1064551001931 IA1_09680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613725.1 2004181 D 1064551 CDS YP_008613726.1 549479666 2004333..2004557 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2004557 1064551001932 IA1_09685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613726.1 2004333 D 1064551 CDS YP_008613727.1 549479667 complement(2004624..2005346) 1 NC_022525.1 regulates genes involved in cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2005346 1064551001933 IA1_09690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613727.1 2004624 R 1064551 CDS YP_008613728.1 549479668 complement(2005579..2006331) 1 NC_022525.1 similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine ABC transporter ATP-binding protein 2006331 glnQ 1064551001934 glnQ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamine ABC transporter ATP-binding protein YP_008613728.1 2005579 R 1064551 CDS YP_008613729.1 549479669 complement(2006328..2006996) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease 2006996 1064551001935 IA1_09700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid ABC transporter permease YP_008613729.1 2006328 R 1064551 CDS YP_008613730.1 549479670 complement(2007017..2008003) 1 NC_022525.1 catalyzes the formation of pyruvate from D-cysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-cysteine desulfhydrase 2008003 1064551001936 IA1_09705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-cysteine desulfhydrase YP_008613730.1 2007017 R 1064551 CDS YP_008613731.1 549479671 complement(2008157..2008957) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cystine transporter subunit 2008957 1064551001937 IA1_09710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cystine transporter subunit YP_008613731.1 2008157 R 1064551 CDS YP_008613732.1 549479672 complement(2009104..2009655) 1 NC_022525.1 expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliZ 2009655 1064551001938 IA1_09715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar biosynthesis protein FliZ YP_008613732.1 2009104 R 1064551 CDS YP_008613733.1 549479673 complement(2009714..2010433) 1 NC_022525.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis sigma factor 2010433 fliA 1064551001939 fliA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar biosynthesis sigma factor YP_008613733.1 2009714 R 1064551 CDS YP_008613734.1 549479674 complement(2010630..2011835) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine-N-methylase 2011835 1064551001940 IA1_09725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lysine-N-methylase YP_008613734.1 2010630 R 1064551 CDS YP_008613735.1 549479675 complement(2011914..2013401) 1 NC_022525.1 structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellin 2013401 1064551001941 IA1_09730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellin YP_008613735.1 2011914 R 1064551 CDS YP_008613736.1 549479676 2013658..2015061 1 NC_022525.1 involved in flagellin assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar capping protein 2015061 fliD 1064551001942 fliD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar capping protein YP_008613736.1 2013658 D 1064551 CDS YP_008613737.1 549479677 2015076..2015483 1 NC_022525.1 flagellin specific chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliS 2015483 fliS 1064551001943 fliS Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar biosynthesis protein FliS YP_008613737.1 2015076 D 1064551 CDS YP_008613738.1 549479678 2015483..2015851 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliT 2015851 1064551001944 IA1_09745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar biosynthesis protein FliT YP_008613738.1 2015483 D 1064551 CDS YP_008613739.1 549479679 2015923..2017407 1 NC_022525.1 converts 1,4-alpha-D-glucans to maltodextrin; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-amylase 2017407 1064551001945 IA1_09750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alpha-amylase YP_008613739.1 2015923 D 1064551 CDS YP_008613740.1 549479680 complement(2017447..2017860) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 2017860 1064551001946 IA1_09755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein YP_008613740.1 2017447 R 1064551 CDS YP_008613741.1 549479681 2018046..2019251 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2019251 1064551001947 IA1_09760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613741.1 2018046 D 1064551 CDS YP_008613742.1 549479682 2019248..2019481 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2019481 1064551001948 IA1_09765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613742.1 2019248 D 1064551 CDS YP_008613743.1 549482021 2019779..2020132 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 50S ribosomal protein L1 2020132 1064551001949 IA1_09770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L1 YP_008613743.1 2019779 D 1064551 CDS YP_008613744.1 549479683 complement(2020253..2020567) 1 NC_022525.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-basal body protein FliE 2020567 fliE 1064551001950 fliE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar hook-basal body protein FliE YP_008613744.1 2020253 R 1064551 CDS YP_008613745.1 549479684 2020784..2022466 1 NC_022525.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar MS-ring protein 2022466 fliF 1064551001951 fliF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar MS-ring protein YP_008613745.1 2020784 D 1064551 CDS YP_008613746.1 549479685 2022459..2023454 1 NC_022525.1 One of three proteins involved in switching the direction of the flagellar rotation; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor switch protein FliG 2023454 fliG 1064551001952 fliG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar motor switch protein FliG YP_008613746.1 2022459 D 1064551 CDS YP_008613747.1 549479686 2023447..2024154 1 NC_022525.1 binds to and inhibits the function of flagella specific ATPase FliI; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar assembly protein H 2024154 fliH 1064551001953 fliH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar assembly protein H YP_008613747.1 2023447 D 1064551 CDS YP_008613748.1 549479687 2024154..2025524 1 NC_022525.1 involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP synthase 2025524 fliI 1064551001954 fliI Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP synthase YP_008613748.1 2024154 D 1064551 CDS YP_008613749.1 549479688 2025546..2025989 1 NC_022525.1 rod/hook and filament chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis chaperone 2025989 fliJ 1064551001955 fliJ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar biosynthesis chaperone YP_008613749.1 2025546 D 1064551 CDS YP_008613750.1 549479689 2025986..2027209 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-length control protein 2027209 1064551001956 IA1_09805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar hook-length control protein YP_008613750.1 2025986 D 1064551 CDS YP_008613751.1 549479690 2027314..2027781 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body protein FliL 2027781 1064551001957 IA1_09810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar basal body protein FliL YP_008613751.1 2027314 D 1064551 CDS YP_008613752.1 549479691 2027786..2028790 1 NC_022525.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor switch protein FliM 2028790 fliM 1064551001958 fliM Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar motor switch protein FliM YP_008613752.1 2027786 D 1064551 CDS YP_008613753.1 549479692 2028787..2029200 1 NC_022525.1 One of three proteins involved in switching the direction of the flagellar rotation; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor switch protein FliN 2029200 fliN 1064551001959 fliN Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar motor switch protein FliN YP_008613753.1 2028787 D 1064551 CDS YP_008613754.1 549479693 2029200..2029577 1 NC_022525.1 with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliO 2029577 1064551001960 IA1_09825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar biosynthesis protein FliO YP_008613754.1 2029200 D 1064551 CDS YP_008613755.1 549479694 2029577..2030314 1 NC_022525.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliP 2030314 fliP 1064551001961 fliP Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar biosynthesis protein FliP YP_008613755.1 2029577 D 1064551 CDS YP_008613756.1 549479695 2030324..2030593 1 NC_022525.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliQ 2030593 fliQ 1064551001962 fliQ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar biosynthesis protein FliQ YP_008613756.1 2030324 D 1064551 CDS YP_008613757.1 549479696 2030602..2031396 1 NC_022525.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliR 2031396 fliR 1064551001963 fliR Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellar biosynthesis protein FliR YP_008613757.1 2030602 D 1064551 CDS YP_008613758.1 549479697 2031678..2032301 1 NC_022525.1 with RcsB is a positive regulator of capsular polysaccharide synthesis genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid capsular biosynthesis activation protein A 2032301 rcsA 1064551001964 rcsA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 colanic acid capsular biosynthesis activation protein A YP_008613758.1 2031678 D 1064551 CDS YP_008613759.1 549479698 complement(2032340..2032534) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2032534 1064551001965 IA1_09850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613759.1 2032340 R 1064551 CDS YP_008613760.1 549479699 2032663..2032890 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2032890 1064551001966 IA1_09855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613760.1 2032663 D 1064551 CDS YP_008613761.1 549479700 2033200..2034015 1 NC_022525.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannosyl-3-phosphoglycerate phosphatase 2034015 1064551001967 IA1_09860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 mannosyl-3-phosphoglycerate phosphatase YP_008613761.1 2033200 D 1064551 CDS YP_008613762.1 549479701 complement(2033994..2035706) 1 NC_022525.1 catalyzes the formation of cyclic di-3',5'-guanylate from guanosine triphosphate; involved in the regulation of cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase 2035706 1064551001968 IA1_09865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diguanylate cyclase YP_008613762.1 2033994 R 1064551 CDS YP_008613763.1 549482022 complement(2035871..2036056) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2036056 1064551001969 IA1_09870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613763.1 2035871 R 1064551 CDS YP_008613764.1 549479702 complement(2036133..2037044) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2037044 1064551001970 IA1_09875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613764.1 2036133 R 1064551 CDS YP_008613765.1 549479703 2037220..2038140 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2038140 1064551001971 IA1_09880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008613765.1 2037220 D 1064551 CDS YP_008613766.1 549479704 complement(2038129..2038599) 1 NC_022525.1 DNA mismatch endonuclease; recognizes and repairs T:G mismatches; Derived by automated computational analysis using gene prediction method: Protein Homology.; very short patch repair endonuclease 2038599 1064551001972 IA1_09885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 very short patch repair endonuclease YP_008613766.1 2038129 R 1064551 CDS YP_008613767.1 549479705 complement(2038580..2040010) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-cytosine methyltransferase 2040010 1064551001973 IA1_09890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-cytosine methyltransferase YP_008613767.1 2038580 R 1064551 CDS YP_008613768.1 549479706 complement(2040084..2040779) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 2040779 1064551001974 IA1_09895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrolase YP_008613768.1 2040084 R 1064551 CDS YP_008613769.1 549479707 complement(2040859..2041170) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2041170 1064551001975 IA1_09900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613769.1 2040859 R 1064551 CDS YP_008613770.1 549479708 2041820..2043031 1 NC_022525.1 allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin protein C 2043031 1064551001976 IA1_09905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane porin protein C YP_008613770.1 2041820 D 1064551 CDS YP_008613771.1 549479709 complement(2043490..2043702) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA chaperone/anti-terminator 2043702 1064551001977 IA1_09910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA chaperone/anti-terminator YP_008613771.1 2043490 R 1064551 CDS YP_008613772.1 549479710 complement(2044157..2045425) 1 NC_022525.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase V subunit UmuC 2045425 1064551001978 IA1_09915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA polymerase V subunit UmuC YP_008613772.1 2044157 R 1064551 CDS YP_008613773.1 549479711 complement(2045428..2045847) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; umuDC operon protein-like protein 2045847 1064551001979 IA1_09920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 umuDC operon protein-like protein YP_008613773.1 2045428 R 1064551 CDS YP_008613774.1 549479712 2046616..2047413 1 NC_022525.1 Mlc anti-repressor; regulates ptsG by binding and inactivating Mlc; Derived by automated computational analysis using gene prediction method: Protein Homology.; DgsA anti-repressor MtfA 2047413 1064551001981 IA1_09930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DgsA anti-repressor MtfA YP_008613774.1 2046616 D 1064551 CDS YP_008613775.1 549482023 2047785..2048075 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; P4-type integrase 2048075 1064551001983 IA1_09940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 P4-type integrase YP_008613775.1 2047785 D 1064551 CDS YP_008613776.1 549482024 complement(2048082..2048186) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2048186 1064551001984 IA1_09945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613776.1 2048082 R 1064551 CDS YP_008613777.1 549479713 2048722..2049195 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase 2049195 1064551001986 IA1_09955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidase YP_008613777.1 2048722 D 1064551 CDS YP_008613778.1 549479714 2049669..2050367 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 2050367 1064551001987 IA1_09960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-binding protein YP_008613778.1 2049669 D 1064551 CDS YP_008613779.1 549479715 2050710..2052878 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2052878 1064551001988 IA1_09965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613779.1 2050710 D 1064551 CDS YP_008613780.1 549482025 2052935..2054665 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2054665 1064551001989 IA1_09970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613780.1 2052935 D 1064551 CDS YP_008613781.1 549482026 2054696..2054830 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2054830 1064551001990 IA1_09975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613781.1 2054696 D 1064551 CDS YP_008613782.1 549482027 2054875..2055048 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2055048 1064551001991 IA1_09980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613782.1 2054875 D 1064551 CDS YP_008613783.1 549482028 2055367..2055456 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2055456 1064551001992 IA1_09985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613783.1 2055367 D 1064551 CDS YP_008613784.1 549479716 complement(2055570..2057024) 1 NC_022525.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP nucleosidase 2057024 1064551001993 IA1_09990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 AMP nucleosidase YP_008613784.1 2055570 R 1064551 CDS YP_008613785.1 549479717 complement(2057220..2057546) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl carrier protein 2057546 1064551001994 IA1_09995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyl carrier protein YP_008613785.1 2057220 R 1064551 CDS YP_008613786.1 549482029 complement(2057540..2057926) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2057926 1064551001995 IA1_10000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613786.1 2057540 R 1064551 CDS YP_008613787.1 549482030 2058119..2058418 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2058418 1064551001996 IA1_10005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613787.1 2058119 D 1064551 CDS YP_008613788.1 549479718 complement(2058639..2060156) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MATE family multidrug exporter 2060156 1064551001998 IA1_10015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MATE family multidrug exporter YP_008613788.1 2058639 R 1064551 CDS YP_008613789.1 549482031 2060496..2060798 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 2060798 1064551002000 IA1_10025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 integrase YP_008613789.1 2060496 D 1064551 CDS YP_008613790.1 549482032 complement(2060817..2061866) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arsenic transporter 2061866 1064551002001 IA1_10030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arsenic transporter YP_008613790.1 2060817 R 1064551 CDS YP_008613791.1 549482033 complement(2061884..2063644) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arsenic transporter ATPase 2063644 1064551002002 IA1_10035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arsenic transporter ATPase YP_008613791.1 2061884 R 1064551 CDS YP_008613792.1 549482034 complement(2063688..2064050) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arsenic resistance operon repressor 2064050 1064551002003 IA1_10040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arsenic resistance operon repressor YP_008613792.1 2063688 R 1064551 CDS YP_008613793.1 549482035 complement(2064084..2064560) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ArsC family transcriptional regulator 2064560 1064551002004 IA1_10045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ArsC family transcriptional regulator YP_008613793.1 2064084 R 1064551 CDS YP_008613794.1 549482036 complement(2064557..2064931) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ArsR family transcriptional regulator 2064931 1064551002005 IA1_10050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ArsR family transcriptional regulator YP_008613794.1 2064557 R 1064551 CDS YP_008613795.1 549479719 complement(2065679..2066608) 1 NC_022525.1 catalyzes th removal of D-alanine and attachment of the murein lipoprotein to the peptidoglycan tetrapeptide chain; Derived by automated computational analysis using gene prediction method: Protein Homology.; L,D-transpeptidase 2066608 1064551002006 IA1_10055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L,D-transpeptidase YP_008613795.1 2065679 R 1064551 CDS YP_008613796.1 549479720 complement(2066686..2067756) 1 NC_022525.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2067756 cobT 1064551002007 cobT Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_008613796.1 2066686 R 1064551 CDS YP_008613797.1 549479721 complement(2067783..2068526) 1 NC_022525.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalamin synthase 2068526 cobS 1064551002008 cobS Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalamin synthase YP_008613797.1 2067783 R 1064551 CDS YP_008613798.1 549479722 complement(2068523..2069068) 1 NC_022525.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosylcobinamide kinase 2069068 cobU 1064551002009 cobU Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adenosylcobinamide kinase YP_008613798.1 2068523 R 1064551 CDS YP_008613799.1 549479723 complement(2069065..2070585) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cobyric acid synthase 2070585 1064551002010 IA1_10075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobyric acid synthase YP_008613799.1 2069065 R 1064551 CDS YP_008613800.1 549479724 complement(2070582..2071397) 1 NC_022525.1 with CbiNQ forms the ABC transporter for cobalt import; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt ABC transporter ATP-binding protein 2071397 cbiO 1064551002011 cbiO Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt ABC transporter ATP-binding protein YP_008613800.1 2070582 R 1064551 CDS YP_008613801.1 549479725 complement(2071406..2072083) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt transporter CbiQ 2072083 1064551002012 IA1_10085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt transporter CbiQ YP_008613801.1 2071406 R 1064551 CDS YP_008613802.1 549479726 complement(2072070..2072351) 1 NC_022525.1 periplasmic cobalt binding component of the cobalt transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt transporter CbiN 2072351 1064551002013 IA1_10090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt transporter CbiN YP_008613802.1 2072070 R 1064551 CDS YP_008613803.1 549482037 complement(2072353..2073090) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cobalt transporter CbiM 2073090 1064551002014 IA1_10095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt transporter CbiM YP_008613803.1 2072353 R 1064551 CDS YP_008613804.1 549479727 complement(2073087..2073800) 1 NC_022525.1 catalyzes the formation of precorrin-3A from precorrin-2; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt-precorrin-2 C(20)-methyltransferase 2073800 1064551002015 IA1_10100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt-precorrin-2 C(20)-methyltransferase YP_008613804.1 2073087 R 1064551 CDS YP_008613805.1 549479728 complement(2073797..2074591) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sirohydrochlorin cobaltochelatase 2074591 1064551002016 IA1_10105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sirohydrochlorin cobaltochelatase YP_008613805.1 2073797 R 1064551 CDS YP_008613806.1 549479729 complement(2074594..2075385) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt-precorrin-6x reductase 2075385 1064551002017 IA1_10110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt-precorrin-6x reductase YP_008613806.1 2074594 R 1064551 CDS YP_008613807.1 549479730 complement(2075382..2076107) 1 NC_022525.1 catalyzes the formation of cobalt-precorrin-4 from cobalt-precorrin-3B; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt-precorrin-3B C(17)-methyltransferase 2076107 cbiH 1064551002018 cbiH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt-precorrin-3B C(17)-methyltransferase YP_008613807.1 2075382 R 1064551 CDS YP_008613808.1 549479731 complement(2076107..2077162) 1 NC_022525.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalamin biosynthesis protein CbiG 2077162 1064551002019 IA1_10120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalamin biosynthesis protein CbiG YP_008613808.1 2076107 R 1064551 CDS YP_008613809.1 549479732 complement(2077143..2077916) 1 NC_022525.1 catalyzes the formation of cobalt-precorrin-5 from cobalt-precorrin-4; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt-precorrin-4 C(11)-methyltransferase 2077916 cbiF 1064551002020 cbiF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt-precorrin-4 C(11)-methyltransferase YP_008613809.1 2077143 R 1064551 CDS YP_008613810.1 549479733 complement(2077900..2078478) 1 NC_022525.1 catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt-precorrin-6Y C(15)-methyltransferase 2078478 1064551002021 IA1_10130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt-precorrin-6Y C(15)-methyltransferase YP_008613810.1 2077900 R 1064551 CDS YP_008613811.1 549479734 complement(2078468..2079073) 1 NC_022525.1 catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt-precorrin-6Y C(5)-methyltransferase 2079073 1064551002022 IA1_10135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt-precorrin-6Y C(5)-methyltransferase YP_008613811.1 2078468 R 1064551 CDS YP_008613812.1 549479735 complement(2079067..2080206) 1 NC_022525.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt-precorrin-6A synthase 2080206 cbiD 1064551002023 cbiD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt-precorrin-6A synthase YP_008613812.1 2079067 R 1064551 CDS YP_008613813.1 549479736 complement(2080206..2080838) 1 NC_022525.1 catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; Derived by automated computational analysis using gene prediction method: Protein Homology.; precorrin-8X methylmutase 2080838 cbiC 1064551002024 cbiC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 precorrin-8X methylmutase YP_008613813.1 2080206 R 1064551 CDS YP_008613814.1 549479737 complement(2080849..2081808) 1 NC_022525.1 CobD; CbiB in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalamin biosynthesis protein 2081808 1064551002025 IA1_10150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalamin biosynthesis protein YP_008613814.1 2080849 R 1064551 CDS YP_008613815.1 549479738 complement(2081805..2083184) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cobyrinic acid a,c-diamide synthase 2083184 1064551002026 IA1_10155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobyrinic acid a,c-diamide synthase YP_008613815.1 2081805 R 1064551 CDS YP_008613816.1 549479739 complement(2083782..2084693) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 2084693 1064551002027 IA1_10160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 regulatory protein YP_008613816.1 2083782 R 1064551 CDS YP_008613817.1 549479740 complement(2084910..2085704) 1 NC_022525.1 involved in the transport of glycerol into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol uptake facilitator GlpF 2085704 1064551002028 IA1_10165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerol uptake facilitator GlpF YP_008613817.1 2084910 R 1064551 CDS YP_008613818.1 549479741 2086229..2086513 1 NC_022525.1 ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein 2086513 1064551002029 IA1_10170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carboxysome shell protein YP_008613818.1 2086229 D 1064551 CDS YP_008613819.1 549482038 2086510..2087322 1 NC_022525.1 carboxysome shell protein; may be involved in the formation of the polyhedral organelles involved in propanediol degradation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; propanediol utilization protein PduB 2087322 1064551002030 IA1_10175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 propanediol utilization protein PduB YP_008613819.1 2086510 D 1064551 CDS YP_008613820.1 549479742 2087341..2089005 1 NC_022525.1 with pduED catalyzes the formation of propionaldehyde from 1,2-propanediol; Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol dehydratase large subunit 2089005 pduC 1064551002031 pduC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 propanediol dehydratase large subunit YP_008613820.1 2087341 D 1064551 CDS YP_008613821.1 549479743 2089016..2089690 1 NC_022525.1 with PduCE catalyzes the formation of propionaldehyde from 1,2-propanediol; Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol dehydratase medium subunit 2089690 pduD 1064551002032 pduD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 propanediol dehydratase medium subunit YP_008613821.1 2089016 D 1064551 CDS YP_008613822.1 549479744 2089705..2090226 1 NC_022525.1 with pduCD catalyzes the formation of propionaldehyde from 1,2-propanediol; Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol dehydratase small subunit 2090226 pduE 1064551002033 pduE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 propanediol dehydratase small subunit YP_008613822.1 2089705 D 1064551 CDS YP_008613823.1 549479745 2090242..2092074 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol dehydratase 2092074 1064551002034 IA1_10195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerol dehydratase YP_008613823.1 2090242 D 1064551 CDS YP_008613824.1 549479746 2092064..2092414 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol dehydratase reactivation protein 2092414 1064551002035 IA1_10200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 propanediol dehydratase reactivation protein YP_008613824.1 2092064 D 1064551 CDS YP_008613825.1 549479747 2092434..2092709 1 NC_022525.1 ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein 2092709 1064551002036 IA1_10205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carboxysome shell protein YP_008613825.1 2092434 D 1064551 CDS YP_008613826.1 549482039 2092734..2093195 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; microcompartments protein 2093195 1064551002037 IA1_10210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 microcompartments protein YP_008613826.1 2092734 D 1064551 CDS YP_008613827.1 549479748 2093195..2093827 1 NC_022525.1 catalyzes the formation of propionyl phosphate from propionyl-CoA in propanediol degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol utilization phosphotransacylase 2093827 1064551002038 IA1_10215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 propanediol utilization phosphotransacylase YP_008613827.1 2093195 D 1064551 CDS YP_008613828.1 549479749 2093824..2094315 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol utilization protein PduM 2094315 1064551002039 IA1_10220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 propanediol utilization protein PduM YP_008613828.1 2093824 D 1064551 CDS YP_008613829.1 549479750 2094319..2094594 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 2094594 1064551002040 IA1_10225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_008613829.1 2094319 D 1064551 CDS YP_008613830.1 549479751 2094604..2095614 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP/cobalamin adenosyltransferase 2095614 1064551002041 IA1_10230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP/cobalamin adenosyltransferase YP_008613830.1 2094604 D 1064551 CDS YP_008613831.1 549479752 2095611..2097005 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase 2097005 1064551002042 IA1_10235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aldehyde dehydrogenase YP_008613831.1 2095611 D 1064551 CDS YP_008613832.1 549479753 2097017..2098129 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol utilization propanol dehydrogenase pduQ 2098129 1064551002043 IA1_10240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 propanediol utilization propanol dehydrogenase pduQ YP_008613832.1 2097017 D 1064551 CDS YP_008613833.1 549482040 2098126..2099481 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; polyhedral body protein 2099481 1064551002044 IA1_10245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 polyhedral body protein YP_008613833.1 2098126 D 1064551 CDS YP_008613834.1 549479754 2099484..2100038 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol utilization: polyhedral bodies pduT 2100038 1064551002045 IA1_10250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 propanediol utilization: polyhedral bodies pduT YP_008613834.1 2099484 D 1064551 CDS YP_008613835.1 549479755 2100038..2100388 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol utilization protein PduU 2100388 1064551002046 IA1_10255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 propanediol utilization protein PduU YP_008613835.1 2100038 D 1064551 CDS YP_008613836.1 549479756 2100393..2100845 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol utilization protein pduV 2100845 1064551002047 IA1_10260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 propanediol utilization protein pduV YP_008613836.1 2100393 D 1064551 CDS YP_008613837.1 549479757 2100830..2102044 1 NC_022525.1 Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetate kinase 2102044 1064551002048 IA1_10265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetate kinase YP_008613837.1 2100830 D 1064551 CDS YP_008613838.1 549479758 2102102..2103004 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GHMP kinase 2103004 1064551002049 IA1_10270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GHMP kinase YP_008613838.1 2102102 D 1064551 CDS YP_008613839.1 549479759 complement(2103038..2103373) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2103373 1064551002050 IA1_10275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613839.1 2103038 R 1064551 CDS YP_008613840.1 549479760 complement(2103618..2104676) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2104676 1064551002051 IA1_10280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613840.1 2103618 R 1064551 CDS YP_008613841.1 549479761 complement(2104795..2105262) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase inhibitor 2105262 1064551002052 IA1_10285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA gyrase inhibitor YP_008613841.1 2104795 R 1064551 CDS YP_008613842.1 549479762 complement(2105415..2106587) 1 NC_022525.1 removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase 2106587 1064551002053 IA1_10290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-alanyl-D-alanine carboxypeptidase YP_008613842.1 2105415 R 1064551 CDS YP_008613843.1 549479763 complement(2106711..2107475) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate reductase cytochrome B 2107475 1064551002054 IA1_10295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiosulfate reductase cytochrome B YP_008613843.1 2106711 R 1064551 CDS YP_008613844.1 549479764 complement(2107472..2108050) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; polysulfide reductase subunit B 2108050 1064551002055 IA1_10300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 polysulfide reductase subunit B YP_008613844.1 2107472 R 1064551 CDS YP_008613845.1 549479765 complement(2108065..2110341) 1 NC_022525.1 catalyzes the production of hydrogen sulfide from thiosulfate; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate reductase 2110341 1064551002056 IA1_10305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiosulfate reductase YP_008613845.1 2108065 R 1064551 CDS YP_008613846.1 549482041 2110960..2113308 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; E3 ubiquitin-protein ligase SopA 2113308 1064551002057 IA1_10310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 E3 ubiquitin-protein ligase SopA YP_008613846.1 2110960 D 1064551 CDS YP_008613847.1 549479766 2113675..2115105 1 NC_022525.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease I 2115105 sbcB 1064551002058 sbcB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exonuclease I YP_008613847.1 2113675 D 1064551 CDS YP_008613848.1 549482042 complement(2115241..2116599) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; putrescine/spermidine ABC transporter 2116599 1064551002059 IA1_10320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 putrescine/spermidine ABC transporter YP_008613848.1 2115241 R 1064551 CDS YP_008613849.1 549479767 complement(2116885..2117799) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 2117799 1064551002060 IA1_10325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcripitonal regulator YP_008613849.1 2116885 R 1064551 CDS YP_008613850.1 549479768 complement(2117845..2118669) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2118669 1064551002061 IA1_10330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613850.1 2117845 R 1064551 CDS YP_008613851.1 549479769 2119028..2119927 1 NC_022525.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP phosphoribosyltransferase 2119927 hisG 1064551002062 hisG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP phosphoribosyltransferase YP_008613851.1 2119028 D 1064551 CDS YP_008613852.1 549479770 2120030..2121334 1 NC_022525.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional histidinal dehydrogenase/ histidinol dehydrogenase 2121334 hisD 1064551002063 hisD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase YP_008613852.1 2120030 D 1064551 CDS YP_008613853.1 549479771 2121331..2122410 1 NC_022525.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidinol-phosphate aminotransferase 2122410 1064551002064 IA1_10345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 histidinol-phosphate aminotransferase YP_008613853.1 2121331 D 1064551 CDS YP_008613854.1 549479772 2122407..2123474 1 NC_022525.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazoleglycerol-phosphate dehydratase 2123474 1064551002065 IA1_10350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 imidazoleglycerol-phosphate dehydratase YP_008613854.1 2122407 D 1064551 CDS YP_008613855.1 549479773 2123474..2124064 1 NC_022525.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazole glycerol phosphate synthase 2124064 hisH 1064551002066 hisH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 imidazole glycerol phosphate synthase YP_008613855.1 2123474 D 1064551 CDS YP_008613856.1 549479774 2124064..2124801 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2124801 1064551002067 IA1_10360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_008613856.1 2124064 D 1064551 CDS YP_008613857.1 549479775 2124783..2125559 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazole glycerol phosphate synthase 2125559 1064551002068 IA1_10365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 imidazole glycerol phosphate synthase YP_008613857.1 2124783 D 1064551 CDS YP_008613858.1 549479776 2125553..2126164 1 NC_022525.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosyl-AMP cyclohydrolase 2126164 1064551002069 IA1_10370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoribosyl-AMP cyclohydrolase YP_008613858.1 2125553 D 1064551 CDS YP_008613859.1 549479777 complement(2126245..2127228) 1 NC_022525.1 regulator of length of O-antigen component of lipopolysaccharide chains; Derived by automated computational analysis using gene prediction method: Protein Homology.; chain-length determining protein 2127228 1064551002070 IA1_10375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chain-length determining protein YP_008613859.1 2126245 R 1064551 CDS YP_008613860.1 549479778 complement(2127371..2128537) 1 NC_022525.1 catalyzes the formation of UDP-glucuronate from UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-glucose 6-dehydrogenase 2128537 1064551002071 IA1_10380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-glucose 6-dehydrogenase YP_008613860.1 2127371 R 1064551 CDS YP_008613861.1 549482043 complement(2128599..2128787) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2128787 1064551002072 IA1_10385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613861.1 2128599 R 1064551 CDS YP_008613862.1 549479779 complement(2128775..2130181) 1 NC_022525.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphogluconate dehydrogenase 2130181 1064551002073 IA1_10390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 6-phosphogluconate dehydrogenase YP_008613862.1 2128775 R 1064551 CDS YP_008613863.1 549482044 complement(2130318..2131844) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2131844 1064551002074 IA1_10395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613863.1 2130318 R 1064551 CDS YP_008613864.1 549479780 complement(2132130..2133500) 1 NC_022525.1 capsular polysaccharide biosynthesis protein; catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphomannomutase 2133500 1064551002075 IA1_10400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphomannomutase YP_008613864.1 2132130 R 1064551 CDS YP_008613865.1 549479781 complement(2133515..2134933) 1 NC_022525.1 capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannose-1-phosphate guanyltransferase 2134933 cpsB 1064551002076 cpsB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 mannose-1-phosphate guanyltransferase YP_008613865.1 2133515 R 1064551 CDS YP_008613866.1 549482045 complement(2134930..2136129) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycosyl transferase family 1 2136129 1064551002077 IA1_10410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycosyl transferase family 1 YP_008613866.1 2134930 R 1064551 CDS YP_008613867.1 549482046 complement(2136116..2137045) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycosyltransferase family 1 2137045 1064551002078 IA1_10415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycosyltransferase family 1 YP_008613867.1 2136116 R 1064551 CDS YP_008613868.1 549482047 complement(2137107..2138108) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; WbaB protein 2138108 1064551002079 IA1_10420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 WbaB protein YP_008613868.1 2137107 R 1064551 CDS YP_008613869.1 549482048 complement(2138108..2139187) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; polymerase 2139187 1064551002080 IA1_10425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 polymerase YP_008613869.1 2138108 R 1064551 CDS YP_008613870.1 549479782 complement(2139572..2140465) 1 NC_022525.1 together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UTP--glucose-1-phosphate uridylyltransferase subunit GalU 2140465 1064551002081 IA1_10430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UTP--glucose-1-phosphate uridylyltransferase subunit GalU YP_008613870.1 2139572 R 1064551 CDS YP_008613871.1 549479783 complement(2140643..2142046) 1 NC_022525.1 WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis protein 2142046 wcaM 1064551002082 wcaM Salmonella enterica subsp. enterica serovar Thompson str. RM6836 colanic acid biosynthesis protein YP_008613871.1 2140643 R 1064551 CDS YP_008613872.1 549479784 complement(2142057..2143277) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis glycosyltransferase WcaL 2143277 1064551002083 IA1_10440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 colanic acid biosynthesis glycosyltransferase WcaL YP_008613872.1 2142057 R 1064551 CDS YP_008613873.1 549479785 complement(2143274..2144554) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis protein 2144554 1064551002084 IA1_10445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 colanic acid biosynthesis protein YP_008613873.1 2143274 R 1064551 CDS YP_008613874.1 549479786 complement(2144576..2146054) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid exporter 2146054 1064551002085 IA1_10450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 colanic acid exporter YP_008613874.1 2144576 R 1064551 CDS YP_008613875.1 549479787 complement(2146156..2147550) 1 NC_022525.1 WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-glucose lipid carrier transferase 2147550 1064551002086 IA1_10455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-glucose lipid carrier transferase YP_008613875.1 2146156 R 1064551 CDS YP_008613876.1 549479788 complement(2147604..2148974) 1 NC_022525.1 capsular polysaccharide biosynthesis protein; catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphomannomutase 2148974 1064551002087 IA1_10460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphomannomutase YP_008613876.1 2147604 R 1064551 CDS YP_008613877.1 549479789 complement(2149085..2150527) 1 NC_022525.1 capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannose-1-phosphate guanyltransferase 2150527 cpsB 1064551002088 cpsB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 mannose-1-phosphate guanyltransferase YP_008613877.1 2149085 R 1064551 CDS YP_008613878.1 549479790 complement(2150524..2151747) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase 2151747 1064551002089 IA1_10470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycosyl transferase YP_008613878.1 2150524 R 1064551 CDS YP_008613879.1 549482049 complement(2151744..2152217) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2152217 1064551002090 IA1_10475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613879.1 2151744 R 1064551 CDS YP_008613880.1 549479791 complement(2152220..2153185) 1 NC_022525.1 bifunctional GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase;catalyzes the formation of GDP-fucose from GDP-4-dehydro-6-deoxy-D-mannose; Derived by automated computational analysis using gene prediction method: Protein Homology.; GDP-fucose synthetase 2153185 1064551002091 IA1_10480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GDP-fucose synthetase YP_008613880.1 2152220 R 1064551 CDS YP_008613881.1 549479792 complement(2153188..2154309) 1 NC_022525.1 catalyzes the formation of GDP-4-dehydro-6-deoxy-D-mannose from GDP mannose; Derived by automated computational analysis using gene prediction method: Protein Homology.; GDP-mannose 4,6-dehydratase 2154309 1064551002092 IA1_10485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GDP-mannose 4,6-dehydratase YP_008613881.1 2153188 R 1064551 CDS YP_008613882.1 549479793 complement(2154333..2154887) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl transferase 2154887 1064551002093 IA1_10490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyl transferase YP_008613882.1 2154333 R 1064551 CDS YP_008613883.1 549479794 complement(2154903..2155649) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase 2155649 1064551002094 IA1_10495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycosyl transferase YP_008613883.1 2154903 R 1064551 CDS YP_008613884.1 549479795 complement(2155662..2156876) 1 NC_022525.1 essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis protein 2156876 wcaD 1064551002095 wcaD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 colanic acid biosynthesis protein YP_008613884.1 2155662 R 1064551 CDS YP_008613885.1 549479796 complement(2156851..2158068) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase 2158068 1064551002096 IA1_10505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycosyl transferase YP_008613885.1 2156851 R 1064551 CDS YP_008613886.1 549479797 complement(2158065..2158553) 1 NC_022525.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl transferase 2158553 1064551002097 IA1_10510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyl transferase YP_008613886.1 2158065 R 1064551 CDS YP_008613887.1 549479798 complement(2158556..2159398) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase 2159398 1064551002098 IA1_10515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycosyl transferase YP_008613887.1 2158556 R 1064551 CDS YP_008613888.1 549479799 complement(2159485..2161644) 1 NC_022525.1 Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine kinase 2161644 1064551002099 IA1_10520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tyrosine kinase YP_008613888.1 2159485 R 1064551 CDS YP_008613889.1 549479800 complement(2161641..2162090) 1 NC_022525.1 Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-tyrosine phosphatase 2162090 1064551002100 IA1_10525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protein-tyrosine phosphatase YP_008613889.1 2161641 R 1064551 CDS YP_008613890.1 549479801 complement(2162096..2163235) 1 NC_022525.1 required for the translocation of capsular polysaccharide through the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; polysaccharide export protein Wza 2163235 1064551002101 IA1_10530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 polysaccharide export protein Wza YP_008613890.1 2162096 R 1064551 CDS YP_008613891.1 549479802 2163910..2165490 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2165490 1064551002102 IA1_10535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613891.1 2163910 D 1064551 CDS YP_008613892.1 549479803 complement(2165576..2167432) 1 NC_022525.1 YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; Derived by automated computational analysis using gene prediction method: Protein Homology.; assembly protein 2167432 1064551002103 IA1_10540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 assembly protein YP_008613892.1 2165576 R 1064551 CDS YP_008613893.1 549479804 complement(2167471..2168052) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxycytidine triphosphate deaminase 2168052 1064551002104 IA1_10545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 deoxycytidine triphosphate deaminase YP_008613893.1 2167471 R 1064551 CDS YP_008613894.1 549479805 complement(2168143..2168784) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; uridine/cytidine kinase 2168784 1064551002105 IA1_10550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 uridine/cytidine kinase YP_008613894.1 2168143 R 1064551 CDS YP_008613895.1 549479806 2169115..2172105 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase/phosphodiesterase 2172105 1064551002106 IA1_10555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diguanylate cyclase/phosphodiesterase YP_008613895.1 2169115 D 1064551 CDS YP_008613896.1 549482050 complement(2172073..2172942) 1 NC_022525.1 inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 3-methyl-adenine DNA glycosylase 2172942 1064551002107 IA1_10560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-methyl-adenine DNA glycosylase YP_008613896.1 2172073 R 1064551 CDS YP_008613897.1 549479807 2173076..2174428 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone 2174428 1064551002108 IA1_10565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chaperone YP_008613897.1 2173076 D 1064551 CDS YP_008613898.1 549479808 2174869..2176110 1 NC_022525.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2176110 1064551002109 IA1_10570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008613898.1 2174869 D 1064551 CDS YP_008613899.1 549479809 2176110..2179232 1 NC_022525.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2179232 1064551002110 IA1_10575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008613899.1 2176110 D 1064551 CDS YP_008613900.1 549479810 2179233..2182313 1 NC_022525.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2182313 1064551002111 IA1_10580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008613900.1 2179233 D 1064551 CDS YP_008613901.1 549482051 2182310..2183722 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transporter 2183722 1064551002112 IA1_10585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008613901.1 2182310 D 1064551 CDS YP_008613902.1 549479811 2183722..2185125 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; signal transduction histidine-protein kinase BaeS 2185125 1064551002113 IA1_10590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 signal transduction histidine-protein kinase BaeS YP_008613902.1 2183722 D 1064551 CDS YP_008613903.1 549479812 2185122..2185844 1 NC_022525.1 response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2185844 1064551002114 IA1_10595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613903.1 2185122 D 1064551 CDS YP_008613904.1 549482052 2186113..2187315 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2187315 1064551002115 IA1_10600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613904.1 2186113 D 1064551 CDS YP_008613905.1 549479813 2187315..2188031 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2188031 1064551002116 IA1_10605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613905.1 2187315 D 1064551 CDS YP_008613906.1 549479814 2188042..2190153 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2190153 1064551002117 IA1_10610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613906.1 2188042 D 1064551 CDS YP_008613907.1 549482053 2190158..2190877 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2190877 1064551002118 IA1_10615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613907.1 2190158 D 1064551 CDS YP_008613908.1 549482054 complement(2191005..2191553) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2191553 1064551002119 IA1_10620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613908.1 2191005 R 1064551 CDS YP_008613909.1 549482055 complement(2191890..2192117) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2192117 1064551002120 IA1_10625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613909.1 2191890 R 1064551 CDS YP_008613910.1 549482056 complement(2192201..2192698) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2192698 1064551002121 IA1_10630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613910.1 2192201 R 1064551 CDS YP_008613911.1 549482057 complement(2192898..2193275) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2193275 1064551002122 IA1_10635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613911.1 2192898 R 1064551 CDS YP_008613912.1 549482058 complement(2193646..2194080) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2194080 1064551002123 IA1_10640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613912.1 2193646 R 1064551 CDS YP_008613913.1 549482059 complement(2194228..2194452) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2194452 1064551002124 IA1_10645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613913.1 2194228 R 1064551 CDS YP_008613914.1 549482060 complement(2194510..2194851) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2194851 1064551002125 IA1_10650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613914.1 2194510 R 1064551 CDS YP_008613915.1 549482061 complement(2195126..2195248) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2195248 1064551002126 IA1_10655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613915.1 2195126 R 1064551 CDS YP_008613916.1 549482062 complement(2195625..2195993) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2195993 1064551002127 IA1_10660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613916.1 2195625 R 1064551 CDS YP_008613917.1 549482063 complement(2196005..2196607) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2196607 1064551002128 IA1_10665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613917.1 2196005 R 1064551 CDS YP_008613918.1 549482064 complement(2196697..2197206) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2197206 1064551002129 IA1_10670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613918.1 2196697 R 1064551 CDS YP_008613919.1 549482065 complement(2197832..2198275) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2198275 1064551002130 IA1_10675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613919.1 2197832 R 1064551 CDS YP_008613920.1 549482066 complement(2198824..2199243) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2199243 1064551002131 IA1_10685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613920.1 2198824 R 1064551 CDS YP_008613921.1 549482067 complement(2199898..2200515) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2200515 1064551002132 IA1_10690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613921.1 2199898 R 1064551 CDS YP_008613922.1 549479815 2200676..2202040 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 2202040 1064551002133 IA1_10695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protease YP_008613922.1 2200676 D 1064551 CDS YP_008613923.1 549479816 2204114..2205013 1 NC_022525.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid kinase 2205013 1064551002134 IA1_10700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipid kinase YP_008613923.1 2204114 D 1064551 CDS YP_008613924.1 549479817 complement(2205066..2206118) 1 NC_022525.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase 2206118 1064551002135 IA1_10705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fructose-bisphosphate aldolase YP_008613924.1 2205066 R 1064551 CDS YP_008613925.1 549479818 2206372..2207643 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside transporter 2207643 1064551002136 IA1_10710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleoside transporter YP_008613925.1 2206372 D 1064551 CDS YP_008613926.1 549479819 2207640..2208644 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2208644 1064551002137 IA1_10715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613926.1 2207640 D 1064551 CDS YP_008613927.1 549479820 2208641..2209606 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar kinase 2209606 1064551002138 IA1_10720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar kinase YP_008613927.1 2208641 D 1064551 CDS YP_008613928.1 549479821 complement(2209580..2210326) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 2210326 1064551002139 IA1_10725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GntR family transcriptional regulator YP_008613928.1 2209580 R 1064551 CDS YP_008613929.1 549479822 complement(2210362..2211162) 1 NC_022525.1 catalyzes the formation hydroxymethylpyrimidine phosphate from hydroxymethylpyrimidine and the formation of of 4-amino-2-methyl-5-diphosphomethylpyrimidine from hydroxymethylpyrimidine phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase 2211162 1064551002140 IA1_10730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase YP_008613929.1 2210362 R 1064551 CDS YP_008613930.1 549479823 complement(2211149..2211946) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyethylthiazole kinase 2211946 1064551002141 IA1_10735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydroxyethylthiazole kinase YP_008613930.1 2211149 R 1064551 CDS YP_008613931.1 549479824 2212356..2212670 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel/cobalt homeostasis protein RcnB 2212670 1064551002142 IA1_10740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nickel/cobalt homeostasis protein RcnB YP_008613931.1 2212356 D 1064551 CDS YP_008613932.1 549482068 complement(2212714..2213736) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein 2213736 1064551002143 IA1_10745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein YP_008613932.1 2212714 R 1064551 CDS YP_008613933.1 549479825 complement(2213752..2216238) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial outer membrane usher protein 2216238 1064551002144 IA1_10750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial outer membrane usher protein YP_008613933.1 2213752 R 1064551 CDS YP_008613934.1 549479826 complement(2216267..2216947) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial assembly chaperone protein StcB 2216947 1064551002145 IA1_10755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial assembly chaperone protein StcB YP_008613934.1 2216267 R 1064551 CDS YP_008613935.1 549479827 complement(2217009..2217542) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 2217542 1064551002146 IA1_10760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein YP_008613935.1 2217009 R 1064551 CDS YP_008613936.1 549479828 complement(2217821..2218102) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2218102 1064551002147 IA1_10765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613936.1 2217821 R 1064551 CDS YP_008613937.1 549479829 complement(2218380..2219489) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ATPase 2219489 1064551002148 IA1_10770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATPase YP_008613937.1 2218380 R 1064551 CDS YP_008613938.1 549479830 2219654..2221687 1 NC_022525.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionyl-tRNA synthetase 2221687 metG 1064551002149 metG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methionyl-tRNA synthetase YP_008613938.1 2219654 D 1064551 CDS YP_008613939.1 549479831 2221928..2222386 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2222386 1064551002150 IA1_10780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613939.1 2221928 D 1064551 CDS YP_008613940.1 549479832 2222558..2223088 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2223088 1064551002151 IA1_10785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613940.1 2222558 D 1064551 CDS YP_008613941.1 549479833 complement(2223145..2223612) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2223612 1064551002152 IA1_10790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613941.1 2223145 R 1064551 CDS YP_008613942.1 549479834 complement(2223659..2224378) 1 NC_022525.1 unknown function; when overproduced it confers drug-resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2224378 1064551002153 IA1_10795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613942.1 2223659 R 1064551 CDS YP_008613943.1 549479835 complement(2224375..2226060) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase 2226060 1064551002154 IA1_10800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensor histidine kinase YP_008613943.1 2224375 R 1064551 CDS YP_008613944.1 549479836 2226283..2227014 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MerR family transcriptional regulator 2227014 1064551002155 IA1_10805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MerR family transcriptional regulator YP_008613944.1 2226283 D 1064551 CDS YP_008613945.1 549482069 2227074..2227181 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2227181 1064551002156 IA1_10810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613945.1 2227074 D 1064551 CDS YP_008613946.1 549479837 complement(2227162..2227893) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter permease 2227893 1064551002157 IA1_10815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycine/betaine ABC transporter permease YP_008613946.1 2227162 R 1064551 CDS YP_008613947.1 549479838 complement(2227877..2228824) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter ATP-binding protein 2228824 1064551002158 IA1_10820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycine/betaine ABC transporter ATP-binding protein YP_008613947.1 2227877 R 1064551 CDS YP_008613948.1 549479839 complement(2228817..2229986) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; osmoprotectant uptake system permease 2229986 1064551002159 IA1_10825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 osmoprotectant uptake system permease YP_008613948.1 2228817 R 1064551 CDS YP_008613949.1 549479840 complement(2229990..2230907) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; osmoprotectant uptake system substrate-binding protein 2230907 1064551002160 IA1_10830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 osmoprotectant uptake system substrate-binding protein YP_008613949.1 2229990 R 1064551 CDS YP_008613950.1 549479841 complement(2231088..2233385) 1 NC_022525.1 catalyzes the hydrolysis of terminal beta-D-glucosyl residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-D-glucoside glucohydrolase 2233385 1064551002161 IA1_10835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 beta-D-glucoside glucohydrolase YP_008613950.1 2231088 R 1064551 CDS YP_008613951.1 549479842 2233652..2235382 1 NC_022525.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-lactate dehydrogenase 2235382 1064551002162 IA1_10840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-lactate dehydrogenase YP_008613951.1 2233652 D 1064551 CDS YP_008613952.1 549479843 complement(2235441..2236388) 1 NC_022525.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine endopeptidase 2236388 pbpG 1064551002163 pbpG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-alanyl-D-alanine endopeptidase YP_008613952.1 2235441 R 1064551 CDS YP_008613953.1 549479844 complement(2236554..2237141) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2237141 1064551002164 IA1_10850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613953.1 2236554 R 1064551 CDS YP_008613954.1 549479845 2237273..2237869 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2237869 1064551002165 IA1_10855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613954.1 2237273 D 1064551 CDS YP_008613955.1 549479846 complement(2237917..2238678) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 2238678 1064551002166 IA1_10860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase YP_008613955.1 2237917 R 1064551 CDS YP_008613956.1 549479847 complement(2238744..2240180) 1 NC_022525.1 may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance outer membrane protein MdtQ 2240180 1064551002167 IA1_10865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug resistance outer membrane protein MdtQ YP_008613956.1 2238744 R 1064551 CDS YP_008613957.1 549482070 2240498..2240581 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2240581 1064551002168 IA1_10870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613957.1 2240498 D 1064551 CDS YP_008613958.1 549479848 complement(2240639..2241577) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA-dihydrouridine synthase C 2241577 1064551002169 IA1_10875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA-dihydrouridine synthase C YP_008613958.1 2240639 R 1064551 CDS YP_008613959.1 549479849 complement(2241686..2242879) 1 NC_022525.1 catalyzes the formation of catechol from salicylate; Derived by automated computational analysis using gene prediction method: Protein Homology.; salicylate hydroxylase 2242879 1064551002170 IA1_10880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 salicylate hydroxylase YP_008613959.1 2241686 R 1064551 CDS YP_008613960.1 549479850 complement(2242894..2243538) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; maleylacetoacetate isomerase 2243538 1064551002171 IA1_10885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 maleylacetoacetate isomerase YP_008613960.1 2242894 R 1064551 CDS YP_008613961.1 549479851 complement(2243547..2244248) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-carboxymethyl-2-hydroxymuconate isomerase 2244248 1064551002172 IA1_10890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5-carboxymethyl-2-hydroxymuconate isomerase YP_008613961.1 2243547 R 1064551 CDS YP_008613962.1 549479852 complement(2244264..2245301) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; gentisate 1,2-dioxygenase 2245301 1064551002173 IA1_10895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 gentisate 1,2-dioxygenase YP_008613962.1 2244264 R 1064551 CDS YP_008613963.1 549479853 complement(2245313..2246671) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxybenzoate transporter 2246671 1064551002174 IA1_10900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-hydroxybenzoate transporter YP_008613963.1 2245313 R 1064551 CDS YP_008613964.1 549479854 2246797..2247705 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2247705 1064551002175 IA1_10905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613964.1 2246797 D 1064551 CDS YP_008613965.1 549479855 2247837..2248235 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2248235 1064551002176 IA1_10910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613965.1 2247837 D 1064551 CDS YP_008613966.1 549479856 2248232..2248927 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2248927 1064551002177 IA1_10915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613966.1 2248232 D 1064551 CDS YP_008613967.1 549479857 2249081..2249965 1 NC_022525.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytidine deaminase 2249965 1064551002178 IA1_10920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytidine deaminase YP_008613967.1 2249081 D 1064551 CDS YP_008613968.1 549479858 2250142..2250861 1 NC_022525.1 involved in vancomycin sensitivity and other barrier functions of the cell envelope; Derived by automated computational analysis using gene prediction method: Protein Homology.; vancomycin high temperature exclusion protein 2250861 1064551002179 IA1_10925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 vancomycin high temperature exclusion protein YP_008613968.1 2250142 D 1064551 CDS YP_008613969.1 549479859 2250858..2251103 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2251103 1064551002180 IA1_10930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613969.1 2250858 D 1064551 CDS YP_008613970.1 549479860 2251308..2252549 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropyrimidine dehydrogenase subunit A 2252549 1064551002181 IA1_10935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydropyrimidine dehydrogenase subunit A YP_008613970.1 2251308 D 1064551 CDS YP_008613971.1 549479861 2252543..2253778 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropyrimidine dehydrogenase subunit B 2253778 1064551002182 IA1_10940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydropyrimidine dehydrogenase subunit B YP_008613971.1 2252543 D 1064551 CDS YP_008613972.1 549479862 complement(2253853..2254863) 1 NC_022525.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-methylgalactoside transporter 2254863 mglC 1064551002183 mglC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 beta-methylgalactoside transporter YP_008613972.1 2253853 R 1064551 CDS YP_008613973.1 549479863 complement(2254879..2256399) 1 NC_022525.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-ribose transporter ATP binding protein 2256399 1064551002184 IA1_10950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-ribose transporter ATP binding protein YP_008613973.1 2254879 R 1064551 CDS YP_008613974.1 549479864 complement(2256533..2257531) 1 NC_022525.1 wtih MglAC is involved in the transport of beta-methylgalactoside; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-galactoside ABC transporter substrate-binding protein 2257531 1064551002185 IA1_10955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methyl-galactoside ABC transporter substrate-binding protein YP_008613974.1 2256533 R 1064551 CDS YP_008613975.1 549479865 complement(2258030..2259052) 1 NC_022525.1 controls transcription of galETKM; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2259052 1064551002186 IA1_10960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613975.1 2258030 R 1064551 CDS YP_008613976.1 549482071 2259042..2259209 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2259209 1064551002187 IA1_10965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613976.1 2259042 D 1064551 CDS YP_008613977.1 549479866 complement(2259202..2260362) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2260362 1064551002188 IA1_10970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613977.1 2259202 R 1064551 CDS YP_008613978.1 549479867 complement(2260359..2261027) 1 NC_022525.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP cyclohydrolase I 2261027 1064551002189 IA1_10975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GTP cyclohydrolase I YP_008613978.1 2260359 R 1064551 CDS YP_008613979.1 549479868 complement(2262203..2262592) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 2262592 1064551002191 IA1_10985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-binding protein YP_008613979.1 2262203 R 1064551 CDS YP_008613980.1 549479869 complement(2262597..2263964) 1 NC_022525.1 catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-serine dehydratase 2263964 1064551002192 IA1_10990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-serine dehydratase YP_008613980.1 2262597 R 1064551 CDS YP_008613981.1 549479870 2264181..2265068 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 2265068 1064551002193 IA1_10995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrolase YP_008613981.1 2264181 D 1064551 CDS YP_008613982.1 549479871 2265101..2266423 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 2266423 1064551002194 IA1_11000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 regulatory protein YP_008613982.1 2265101 D 1064551 CDS YP_008613983.1 549479872 complement(2266467..2268458) 1 NC_022525.1 Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; catecholate siderophore receptor CirA 2268458 1064551002195 IA1_11005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 catecholate siderophore receptor CirA YP_008613983.1 2266467 R 1064551 CDS YP_008613984.1 549479873 complement(2268804..2270273) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine transporter 2270273 1064551002196 IA1_11010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lysine transporter YP_008613984.1 2268804 R 1064551 CDS YP_008613985.1 549479874 complement(2270463..2271326) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2271326 1064551002197 IA1_11015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008613985.1 2270463 R 1064551 CDS YP_008613986.1 549479875 2271447..2272496 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2272496 1064551002198 IA1_11020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613986.1 2271447 D 1064551 CDS YP_008613987.1 549479876 2272575..2273432 1 NC_022525.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease V 2273432 1064551002199 IA1_11025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endonuclease V YP_008613987.1 2272575 D 1064551 CDS YP_008613988.1 549479877 complement(2273497..2275185) 1 NC_022525.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIBC 2275185 1064551002200 IA1_11030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS fructose transporter subunit IIBC YP_008613988.1 2273497 R 1064551 CDS YP_008613989.1 549479878 complement(2275202..2276140) 1 NC_022525.1 converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-phosphofructokinase 2276140 fruK 1064551002201 fruK Salmonella enterica subsp. enterica serovar Thompson str. RM6836 1-phosphofructokinase YP_008613989.1 2275202 R 1064551 CDS YP_008613990.1 549479879 complement(2276140..2277270) 1 NC_022525.1 phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HPr which then transfers the phosphoryl group to the IIB component; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIA 2277270 1064551002202 IA1_11040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS fructose transporter subunit IIA YP_008613990.1 2276140 R 1064551 CDS YP_008613991.1 549482072 2277291..2277422 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2277422 1064551002203 IA1_11045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613991.1 2277291 D 1064551 CDS YP_008613992.1 549479880 2277639..2278820 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar transporter 2278820 1064551002204 IA1_11050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar transporter YP_008613992.1 2277639 D 1064551 CDS YP_008613993.1 549479881 complement(2278885..2279550) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2279550 1064551002205 IA1_11055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613993.1 2278885 R 1064551 CDS YP_008613994.1 549482073 2280640..2281212 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2281212 1064551002206 IA1_11060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613994.1 2280640 D 1064551 CDS YP_008613995.1 549479882 2281425..2282411 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2282411 1064551002207 IA1_11065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008613995.1 2281425 D 1064551 CDS YP_008613996.1 549479883 2282441..2283160 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2283160 1064551002208 IA1_11070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008613996.1 2282441 D 1064551 CDS YP_008613997.1 549479884 2283574..2284146 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase 2284146 1064551002209 IA1_11075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endopeptidase YP_008613997.1 2283574 D 1064551 CDS YP_008613998.1 549479885 2284472..2286028 1 NC_022525.1 involved in resistance to the phages N4 and lambda; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage resistance protein 2286028 1064551002210 IA1_11080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phage resistance protein YP_008613998.1 2284472 D 1064551 CDS YP_008613999.1 549479886 2286135..2287940 1 NC_022525.1 with YejBEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein 2287940 1064551002211 IA1_11085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter substrate-binding protein YP_008613999.1 2286135 D 1064551 CDS YP_008614000.1 549479887 2287950..2289044 1 NC_022525.1 with YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.; microcin C ABC transporter permease YejB 2289044 1064551002212 IA1_11090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 microcin C ABC transporter permease YejB YP_008614000.1 2287950 D 1064551 CDS YP_008614001.1 549479888 2289044..2290069 1 NC_022525.1 part of the microcin C transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; microcin C ABC transporter permease 2290069 1064551002213 IA1_11095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 microcin C ABC transporter permease YP_008614001.1 2289044 D 1064551 CDS YP_008614002.1 549479889 2290071..2291660 1 NC_022525.1 with YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.; microcin C ABC transporter ATP-binding protein YejF 2291660 1064551002214 IA1_11100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 microcin C ABC transporter ATP-binding protein YejF YP_008614002.1 2290071 D 1064551 CDS YP_008614003.1 549479890 complement(2291664..2292008) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2292008 1064551002215 IA1_11105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614003.1 2291664 R 1064551 CDS YP_008614004.1 549482074 complement(2292399..2293589) 1 NC_022525.1 Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; multidrug transporter 2293589 1064551002216 IA1_11110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008614004.1 2292399 R 1064551 CDS YP_008614005.1 549479891 complement(2293617..2294312) 1 NC_022525.1 catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA pseudouridylate synthase 2294312 1064551002217 IA1_11115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 16S rRNA pseudouridylate synthase YP_008614005.1 2293617 R 1064551 CDS YP_008614006.1 549479892 2294464..2296224 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2296224 1064551002218 IA1_11120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614006.1 2294464 D 1064551 CDS YP_008614007.1 549479893 2296349..2296633 1 NC_022525.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L25 2296633 1064551002219 IA1_11125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L25 YP_008614007.1 2296349 D 1064551 CDS YP_008614008.1 549482075 complement(2296742..2297362) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2297362 1064551002220 IA1_11130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614008.1 2296742 R 1064551 CDS YP_008614009.1 549479894 complement(2297390..2298397) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoid-associated protein NdpA 2298397 1064551002221 IA1_11135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleoid-associated protein NdpA YP_008614009.1 2297390 R 1064551 CDS YP_008614010.1 549482076 2298577..2298804 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2298804 1064551002222 IA1_11140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614010.1 2298577 D 1064551 CDS YP_008614011.1 549479895 2298836..2300596 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2300596 1064551002223 IA1_11145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614011.1 2298836 D 1064551 CDS YP_008614012.1 549482077 complement(2301057..2301206) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA polymerase V 2301206 1064551002225 IA1_11160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA polymerase V YP_008614012.1 2301057 R 1064551 CDS YP_008614013.1 549482078 complement(2301367..2303031) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2303031 1064551002226 IA1_11165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614013.1 2301367 R 1064551 CDS YP_008614014.1 549482079 complement(2304282..2305124) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein 2305124 1064551002228 IA1_11175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tail protein YP_008614014.1 2304282 R 1064551 CDS YP_008614015.1 549479896 2305202..2305579 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; virulence protein MsgA 2305579 1064551002229 IA1_11180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 virulence protein MsgA YP_008614015.1 2305202 D 1064551 CDS YP_008614016.1 549482080 complement(2305771..2306328) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2306328 1064551002230 IA1_11185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614016.1 2305771 R 1064551 CDS YP_008614017.1 549479897 2307064..2307711 1 NC_022525.1 nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2307711 1064551002231 IA1_11190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614017.1 2307064 D 1064551 CDS YP_008614018.1 549479898 complement(2307755..2308798) 1 NC_022525.1 cytochrome c-type biogenesis protein; involved in the attachment of heme to cytochrome c; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme lyase subunit CcmH 2308798 1064551002232 IA1_11195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heme lyase subunit CcmH YP_008614018.1 2307755 R 1064551 CDS YP_008614019.1 549479899 complement(2308795..2309352) 1 NC_022525.1 cytochrome c-type biogenesis thioredoxin; involved in the reduction of disulfide bonds to allow heme bonding; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol:disulfide interchange protein 2309352 1064551002233 IA1_11200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiol:disulfide interchange protein YP_008614019.1 2308795 R 1064551 CDS YP_008614020.1 549482081 complement(2309349..2311280) 1 NC_022525.1 cytochrome c-type biogenesis protein; required for the transfer of heme to apocytochrome c; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; heme lyase subunit CcmF 2311280 1064551002234 IA1_11205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heme lyase subunit CcmF YP_008614020.1 2309349 R 1064551 CDS YP_008614021.1 549479900 complement(2311277..2311756) 1 NC_022525.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C biogenesis protein 2311756 1064551002235 IA1_11210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome C biogenesis protein YP_008614021.1 2311277 R 1064551 CDS YP_008614022.1 549482082 complement(2311753..2311965) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2311965 1064551002236 IA1_11215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614022.1 2311753 R 1064551 CDS YP_008614023.1 549479901 complement(2311962..2312699) 1 NC_022525.1 with CcmABDE is involved in the transport of protoheme IX; CcmC is required for heme transfer to CcmE; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter permease 2312699 1064551002237 IA1_11220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heme ABC transporter permease YP_008614023.1 2311962 R 1064551 CDS YP_008614024.1 549479902 complement(2312751..2313410) 1 NC_022525.1 with CcmABCE is involved in the transport of protoheme IX; CcmB is required for the release of holoCcmE from CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter permease 2313410 1064551002238 IA1_11225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heme ABC transporter permease YP_008614024.1 2312751 R 1064551 CDS YP_008614025.1 549482083 complement(2313407..2314024) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cytochrome C biogenesis protein CcmA 2314024 1064551002239 IA1_11230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome C biogenesis protein CcmA YP_008614025.1 2313407 R 1064551 CDS YP_008614026.1 549479903 complement(2314045..2314647) 1 NC_022525.1 with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C protein NapC 2314647 1064551002240 IA1_11235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome C protein NapC YP_008614026.1 2314045 R 1064551 CDS YP_008614027.1 549479904 complement(2314657..2315106) 1 NC_022525.1 small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase cytochrome C550 subunit 2315106 napB 1064551002241 napB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrate reductase cytochrome C550 subunit YP_008614027.1 2314657 R 1064551 CDS YP_008614028.1 549482084 complement(2315222..2316091) 1 NC_022525.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; quinol dehydrogenase 2316091 napH 1064551002242 napH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 quinol dehydrogenase YP_008614028.1 2315222 R 1064551 CDS YP_008614029.1 549482085 complement(2316078..2316773) 1 NC_022525.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; quinol dehydrogenase 2316773 napG 1064551002243 napG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 quinol dehydrogenase YP_008614029.1 2316078 R 1064551 CDS YP_008614030.1 549479905 complement(2316780..2319266) 1 NC_022525.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase catalytic subunit 2319266 1064551002244 IA1_11255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrate reductase catalytic subunit YP_008614030.1 2316780 R 1064551 CDS YP_008614031.1 549479906 complement(2319263..2319526) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase 2319526 1064551002245 IA1_11260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrate reductase YP_008614031.1 2319263 R 1064551 CDS YP_008614032.1 549482086 complement(2319516..2320007) 1 NC_022525.1 Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ferredoxin 2320007 1064551002246 IA1_11265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferredoxin YP_008614032.1 2319516 R 1064551 CDS YP_008614033.1 549479907 2320409..2320915 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ecotin 2320915 1064551002247 IA1_11270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ecotin YP_008614033.1 2320409 D 1064551 CDS YP_008614034.1 549479908 complement(2321088..2322731) 1 NC_022525.1 efflux pump for the antibacterial peptide microcin J25; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein 2322731 1064551002248 IA1_11275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug ABC transporter ATP-binding protein YP_008614034.1 2321088 R 1064551 CDS YP_008614035.1 549479909 complement(2322807..2323457) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ketoglutarate-dependent dioxygenase 2323457 1064551002249 IA1_11280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alpha-ketoglutarate-dependent dioxygenase YP_008614035.1 2322807 R 1064551 CDS YP_008614036.1 549479910 complement(2323460..2324521) 1 NC_022525.1 regulates genes involved in the repair of alkylated DNA; repairs DNA containing 6-O-methylguanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2324521 1064551002250 IA1_11285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614036.1 2323460 R 1064551 CDS YP_008614037.1 549479911 complement(2324602..2325654) 1 NC_022525.1 catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine biosynthesis lipoprotein ApbE 2325654 1064551002251 IA1_11290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiamine biosynthesis lipoprotein ApbE YP_008614037.1 2324602 R 1064551 CDS YP_008614038.1 549479912 complement(2325769..2326905) 1 NC_022525.1 allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin protein C 2326905 1064551002252 IA1_11295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane porin protein C YP_008614038.1 2325769 R 1064551 CDS YP_008614039.1 549479913 2327634..2330303 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2330303 1064551002253 IA1_11300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphotransfer intermediate protein in two-component regulatory system with RcsBC YP_008614039.1 2327634 D 1064551 CDS YP_008614040.1 549479914 2330320..2330970 1 NC_022525.1 two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2330970 1064551002254 IA1_11305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614040.1 2330320 D 1064551 CDS YP_008614041.1 549479915 complement(2331073..2333919) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase 2333919 1064551002255 IA1_11310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensory histidine kinase YP_008614041.1 2331073 R 1064551 CDS YP_008614042.1 549479916 complement(2334037..2336673) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase subunit A 2336673 1064551002256 IA1_11315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA gyrase subunit A YP_008614042.1 2334037 R 1064551 CDS YP_008614043.1 549479917 complement(2337083..2338285) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MR-MLE family protein 2338285 1064551002257 IA1_11320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MR-MLE family protein YP_008614043.1 2337083 R 1064551 CDS YP_008614044.1 549479918 complement(2338300..2339625) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 2339625 1064551002258 IA1_11325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 permease YP_008614044.1 2338300 R 1064551 CDS YP_008614045.1 549479919 2339864..2340559 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 2340559 1064551002259 IA1_11330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 regulatory protein YP_008614045.1 2339864 D 1064551 CDS YP_008614046.1 549479920 2340642..2341370 1 NC_022525.1 Involved in ubiquinone biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase 2341370 1064551002260 IA1_11335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase YP_008614046.1 2340642 D 1064551 CDS YP_008614047.1 549479921 2341726..2344011 1 NC_022525.1 Catalyzes the rate-limiting step in dNTP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit alpha 2344011 1064551002261 IA1_11340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonucleotide-diphosphate reductase subunit alpha YP_008614047.1 2341726 D 1064551 CDS YP_008614048.1 549479922 2344124..2345254 1 NC_022525.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit beta 2345254 1064551002262 IA1_11345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonucleotide-diphosphate reductase subunit beta YP_008614048.1 2344124 D 1064551 CDS YP_008614049.1 549479923 2345254..2345508 1 NC_022525.1 plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2Fe-2S ferredoxin 2345508 1064551002263 IA1_11350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2Fe-2S ferredoxin YP_008614049.1 2345254 D 1064551 CDS YP_008614050.1 549479924 complement(2345510..2346700) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 2346700 1064551002264 IA1_11355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MFS transporter YP_008614050.1 2345510 R 1064551 CDS YP_008614051.1 549479925 2346862..2347740 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2347740 1064551002265 IA1_11360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614051.1 2346862 D 1064551 CDS YP_008614052.1 549479926 complement(2347855..2348925) 1 NC_022525.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerophosphodiester phosphodiesterase 2348925 glpQ 1064551002266 glpQ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerophosphodiester phosphodiesterase YP_008614052.1 2347855 R 1064551 CDS YP_008614053.1 549479927 complement(2348930..2350288) 1 NC_022525.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate transporter 2350288 glpT 1064551002267 glpT Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sn-glycerol-3-phosphate transporter YP_008614053.1 2348930 R 1064551 CDS YP_008614054.1 549479928 2350561..2352189 1 NC_022525.1 anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate dehydrogenase subunit A 2352189 glpA 1064551002268 glpA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sn-glycerol-3-phosphate dehydrogenase subunit A YP_008614054.1 2350561 D 1064551 CDS YP_008614055.1 549479929 2352179..2353438 1 NC_022525.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate dehydrogenase subunit B 2353438 1064551002269 IA1_11380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerol-3-phosphate dehydrogenase subunit B YP_008614055.1 2352179 D 1064551 CDS YP_008614056.1 549479930 2353435..2354625 1 NC_022525.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate dehydrogenase subunit C 2354625 glpC 1064551002270 glpC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sn-glycerol-3-phosphate dehydrogenase subunit C YP_008614056.1 2353435 D 1064551 CDS YP_008614057.1 549479931 2355051..2356073 1 NC_022525.1 similar to ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system; Derived by automated computational analysis using gene prediction method: Protein Homology.; deubiquitinase 2356073 1064551002271 IA1_11390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 deubiquitinase YP_008614057.1 2355051 D 1064551 CDS YP_008614058.1 549479932 complement(2356183..2356359) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2356359 1064551002272 IA1_11395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614058.1 2356183 R 1064551 CDS YP_008614059.1 549479933 complement(2356365..2357168) 1 NC_022525.1 catalyzes the retro-aldol cleavage of 2-keto-3-deoxy-L-rhamnonate to pyruvate and lactaldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxy-L-rhamnonate aldolase 2357168 1064551002273 IA1_11400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-keto-3-deoxy-L-rhamnonate aldolase YP_008614059.1 2356365 R 1064551 CDS YP_008614060.1 549479934 complement(2357194..2358483) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxyphenylacetate permease 2358483 1064551002274 IA1_11405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-hydroxyphenylacetate permease YP_008614060.1 2357194 R 1064551 CDS YP_008614061.1 549479935 complement(2358539..2359756) 1 NC_022525.1 catalyzes the formation of 2-keto-3-deoxy-L-rhamnonate from L-rhamnonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-rhamnonate dehydratase 2359756 1064551002275 IA1_11410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-rhamnonate dehydratase YP_008614061.1 2358539 R 1064551 CDS YP_008614062.1 549479936 complement(2359758..2360540) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator 2360540 1064551002276 IA1_11415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IclR family transcriptional regulator YP_008614062.1 2359758 R 1064551 CDS YP_008614063.1 549479937 complement(2360790..2361986) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2361986 1064551002277 IA1_11420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614063.1 2360790 R 1064551 CDS YP_008614064.1 549479938 complement(2362101..2362775) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2362775 1064551002278 IA1_11425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614064.1 2362101 R 1064551 CDS YP_008614065.1 549479939 2362922..2363347 1 NC_022525.1 catalyzes the hydrolysis of nucleoside triphosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphatase NudI 2363347 1064551002279 IA1_11430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleoside triphosphatase NudI YP_008614065.1 2362922 D 1064551 CDS YP_008614066.1 549479940 complement(2363392..2363997) 1 NC_022525.1 catalyzes the of heptose(II) of the outer membrane lipopolysaccharide core; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core heptose(II)-phosphate phosphatase 2363997 1064551002280 IA1_11435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipopolysaccharide core heptose(II)-phosphate phosphatase YP_008614066.1 2363392 R 1064551 CDS YP_008614067.1 549479941 2364296..2365435 1 NC_022525.1 catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase 2365435 1064551002281 IA1_11440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase YP_008614067.1 2364296 D 1064551 CDS YP_008614068.1 549479942 2365438..2366421 1 NC_022525.1 catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase 2366421 1064551002282 IA1_11445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase YP_008614068.1 2365438 D 1064551 CDS YP_008614069.1 549479943 2366418..2368400 1 NC_022525.1 Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2368400 1064551002283 IA1_11450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase YP_008614069.1 2366418 D 1064551 CDS YP_008614070.1 549479944 2368397..2369296 1 NC_022525.1 catalyzes the formation of 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase 2369296 1064551002284 IA1_11455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase YP_008614070.1 2368397 D 1064551 CDS YP_008614071.1 549479945 2369293..2370939 1 NC_022525.1 catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-amino-4-deoxy-L-arabinose transferase 2370939 arnT 1064551002285 arnT Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-amino-4-deoxy-L-arabinose transferase YP_008614071.1 2369293 D 1064551 CDS YP_008614072.1 549482087 2370936..2371271 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2371271 1064551002286 IA1_11465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614072.1 2370936 D 1064551 CDS YP_008614073.1 549479946 2371271..2371648 1 NC_022525.1 with ArnE is responsible for the transport of 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from the cytoplasm to the periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase subunit F 2371648 1064551002287 IA1_11470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase subunit F YP_008614073.1 2371271 D 1064551 CDS YP_008614074.1 549482088 complement(2371643..2371900) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2371900 1064551002288 IA1_11475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614074.1 2371643 R 1064551 CDS YP_008614075.1 549479947 complement(2371998..2373365) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; O-succinylbenzoic acid--CoA ligase 2373365 1064551002289 IA1_11480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 O-succinylbenzoic acid--CoA ligase YP_008614075.1 2371998 R 1064551 CDS YP_008614076.1 549479948 complement(2373362..2374324) 1 NC_022525.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; O-succinylbenzoate synthase 2374324 1064551002290 IA1_11485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 O-succinylbenzoate synthase YP_008614076.1 2373362 R 1064551 CDS YP_008614077.1 549479949 complement(2374324..2375181) 1 NC_022525.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroxynaphthoic acid synthetase 2375181 1064551002291 IA1_11490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydroxynaphthoic acid synthetase YP_008614077.1 2374324 R 1064551 CDS YP_008614078.1 549479950 complement(2375196..2375954) 1 NC_022525.1 catalyzes the formation of (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate in menaquinone biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 2375954 1064551002292 IA1_11495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase YP_008614078.1 2375196 R 1064551 CDS YP_008614079.1 549479951 complement(2375951..2377621) 1 NC_022525.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 2377621 1064551002293 IA1_11500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_008614079.1 2375951 R 1064551 CDS YP_008614080.1 549479952 complement(2377707..2379002) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; isochorismate synthase 2379002 1064551002294 IA1_11505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 isochorismate synthase YP_008614080.1 2377707 R 1064551 CDS YP_008614081.1 549482089 complement(2379103..2379408) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2379408 1064551002295 IA1_11510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614081.1 2379103 R 1064551 CDS YP_008614082.1 549479953 complement(2379463..2379924) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acyltransferase 2379924 1064551002296 IA1_11515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyltransferase YP_008614082.1 2379463 R 1064551 CDS YP_008614083.1 549482090 2379985..2380902 1 NC_022525.1 RNase BN; member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ribonuclease Z 2380902 1064551002297 IA1_11520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonuclease Z YP_008614083.1 2379985 D 1064551 CDS YP_008614084.1 549479954 2380968..2381969 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheV 2381969 1064551002298 IA1_11525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chemotaxis protein CheV YP_008614084.1 2380968 D 1064551 CDS YP_008614085.1 549479955 complement(2382010..2383791) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2383791 1064551002299 IA1_11530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614085.1 2382010 R 1064551 CDS YP_008614086.1 549482091 complement(2383902..2384021) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2384021 1064551002300 IA1_11535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614086.1 2383902 R 1064551 CDS YP_008614087.1 549479956 complement(2384796..2386253) 1 NC_022525.1 Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit N 2386253 1064551002301 IA1_11540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH:ubiquinone oxidoreductase subunit N YP_008614087.1 2384796 R 1064551 CDS YP_008614088.1 549479957 complement(2386260..2387789) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit M 2387789 1064551002302 IA1_11545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH:ubiquinone oxidoreductase subunit M YP_008614088.1 2386260 R 1064551 CDS YP_008614089.1 549479958 complement(2387866..2389707) 1 NC_022525.1 Catalyzes the transfer of electrons from NADH to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit L 2389707 1064551002303 IA1_11550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH:ubiquinone oxidoreductase subunit L YP_008614089.1 2387866 R 1064551 CDS YP_008614090.1 549482092 complement(2389704..2390006) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; NADH:ubiquinone oxidoreductase subunit K 2390006 1064551002304 IA1_11555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH:ubiquinone oxidoreductase subunit K YP_008614090.1 2389704 R 1064551 CDS YP_008614091.1 549479959 complement(2390003..2390557) 1 NC_022525.1 Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit J 2390557 1064551002305 IA1_11560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH:ubiquinone oxidoreductase subunit J YP_008614091.1 2390003 R 1064551 CDS YP_008614092.1 549479960 complement(2390568..2391110) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit I 2391110 1064551002306 IA1_11565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH dehydrogenase subunit I YP_008614092.1 2390568 R 1064551 CDS YP_008614093.1 549479961 complement(2391125..2392102) 1 NC_022525.1 Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit H 2392102 1064551002307 IA1_11570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH:ubiquinone oxidoreductase subunit H YP_008614093.1 2391125 R 1064551 CDS YP_008614094.1 549479962 complement(2392099..2394825) 1 NC_022525.1 Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit G 2394825 1064551002308 IA1_11575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH dehydrogenase subunit G YP_008614094.1 2392099 R 1064551 CDS YP_008614095.1 549482093 complement(2394856..2396193) 1 NC_022525.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; NADH dehydrogenase subunit F 2396193 1064551002309 IA1_11580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH dehydrogenase subunit F YP_008614095.1 2394856 R 1064551 CDS YP_008614096.1 549479963 complement(2396190..2396690) 1 NC_022525.1 Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit E 2396690 1064551002310 IA1_11585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH dehydrogenase subunit E YP_008614096.1 2396190 R 1064551 CDS YP_008614097.1 549479964 complement(2396693..2398495) 1 NC_022525.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 2398495 1064551002311 IA1_11590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional NADH:ubiquinone oxidoreductase subunit C/D YP_008614097.1 2396693 R 1064551 CDS YP_008614098.1 549479965 complement(2398582..2399244) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit B 2399244 1064551002312 IA1_11595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH dehydrogenase subunit B YP_008614098.1 2398582 R 1064551 CDS YP_008614099.1 549479966 complement(2399260..2399703) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit A 2399703 1064551002313 IA1_11600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH:ubiquinone oxidoreductase subunit A YP_008614099.1 2399260 R 1064551 CDS YP_008614100.1 549479967 complement(2400329..2401267) 1 NC_022525.1 involved in the regulation of genes involved in flagella synthesis, motility and chemotaxis; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2401267 1064551002314 IA1_11605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614100.1 2400329 R 1064551 CDS YP_008614101.1 549482094 complement(2401932..2402093) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2402093 1064551002315 IA1_11610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614101.1 2401932 R 1064551 CDS YP_008614102.1 549479968 2402199..2403413 1 NC_022525.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminotransferase AlaT 2403413 1064551002316 IA1_11615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aminotransferase AlaT YP_008614102.1 2402199 D 1064551 CDS YP_008614103.1 549479969 2403507..2404106 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-nucleotidase 2404106 1064551002317 IA1_11620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5'-nucleotidase YP_008614103.1 2403507 D 1064551 CDS YP_008614104.1 549479970 complement(2404204..2406030) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate transporter 2406030 1064551002318 IA1_11625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 citrate transporter YP_008614104.1 2404204 R 1064551 CDS YP_008614105.1 549479971 complement(2406107..2406766) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatase 2406766 1064551002319 IA1_11630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphatase YP_008614105.1 2406107 R 1064551 CDS YP_008614106.1 549479972 complement(2406777..2407271) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2407271 1064551002320 IA1_11635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614106.1 2406777 R 1064551 CDS YP_008614107.1 549482095 complement(2407354..2407731) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2407731 1064551002321 IA1_11640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614107.1 2407354 R 1064551 CDS YP_008614108.1 549479973 2408149..2409351 1 NC_022525.1 Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetate kinase 2409351 1064551002322 IA1_11645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetate kinase YP_008614108.1 2408149 D 1064551 CDS YP_008614109.1 549479974 2409428..2411572 1 NC_022525.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate acetyltransferase 2411572 1064551002323 IA1_11650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphate acetyltransferase YP_008614109.1 2409428 D 1064551 CDS YP_008614110.1 549479975 2411790..2413310 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2413310 1064551002324 IA1_11655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614110.1 2411790 D 1064551 CDS YP_008614111.1 549482096 complement(2413359..2414312) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transketolase 2414312 1064551002325 IA1_11660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transketolase YP_008614111.1 2413359 R 1064551 CDS YP_008614112.1 549482097 complement(2414305..2415135) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; carbohydrate degradation protein 2415135 1064551002326 IA1_11665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbohydrate degradation protein YP_008614112.1 2414305 R 1064551 CDS YP_008614113.1 549482098 complement(2415132..2416523) 1 NC_022525.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS ascorbate transporter subunit IIC 2416523 ulaA 1064551002327 ulaA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS ascorbate transporter subunit IIC YP_008614113.1 2415132 R 1064551 CDS YP_008614114.1 549479976 complement(2416544..2416816) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannitol transporter subunit IIB 2416816 1064551002328 IA1_11675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS mannitol transporter subunit IIB YP_008614114.1 2416544 R 1064551 CDS YP_008614115.1 549479977 complement(2416897..2417340) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS ascorbate transporter subunit IIA 2417340 1064551002329 IA1_11680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS ascorbate transporter subunit IIA YP_008614115.1 2416897 R 1064551 CDS YP_008614116.1 549482099 2417339..2417512 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2417512 1064551002330 IA1_11685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614116.1 2417339 D 1064551 CDS YP_008614117.1 549479978 2417593..2418612 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family transcriptional regulator 2418612 1064551002331 IA1_11690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LacI family transcriptional regulator YP_008614117.1 2417593 D 1064551 CDS YP_008614118.1 549479979 complement(2418618..2419172) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; NUDIX hydrolase 2419172 1064551002332 IA1_11695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NUDIX hydrolase YP_008614118.1 2418618 R 1064551 CDS YP_008614119.1 549479980 complement(2419229..2419780) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphodiesterase 2419780 1064551002333 IA1_11700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphodiesterase YP_008614119.1 2419229 R 1064551 CDS YP_008614120.1 549479981 complement(2419836..2420480) 1 NC_022525.1 catalyzes the formation of 2,4-dinitrophenyl-S-glutathione from 1-chloro-2,4-dinitrobenzene and glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase 2420480 1064551002334 IA1_11705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathione S-transferase YP_008614120.1 2419836 R 1064551 CDS YP_008614121.1 549479982 2420623..2421270 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase 2421270 1064551002335 IA1_11710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathione S-transferase YP_008614121.1 2420623 D 1064551 CDS YP_008614122.1 549479983 2421396..2422289 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; epimerase 2422289 1064551002336 IA1_11715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 epimerase YP_008614122.1 2421396 D 1064551 CDS YP_008614123.1 549479984 complement(2422341..2423117) 1 NC_022525.1 similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine ABC transporter ATP-binding protein 2423117 glnQ 1064551002337 glnQ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamine ABC transporter ATP-binding protein YP_008614123.1 2422341 R 1064551 CDS YP_008614124.1 549479985 complement(2423128..2423835) 1 NC_022525.1 with HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine/lysine/arginine/ornithine ABC transporter permease HisM 2423835 1064551002338 IA1_11725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 histidine/lysine/arginine/ornithine ABC transporter permease HisM YP_008614124.1 2423128 R 1064551 CDS YP_008614125.1 549479986 complement(2423832..2424518) 1 NC_022525.1 with HisJMP is involved in the transport of histidine/lysine/arginine/ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine/lysine/arginine/ornithine ABC transporter permease HisQ 2424518 1064551002339 IA1_11730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 histidine/lysine/arginine/ornithine ABC transporter permease HisQ YP_008614125.1 2423832 R 1064551 CDS YP_008614126.1 549479987 complement(2424700..2425482) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter 2425482 1064551002340 IA1_11735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 zinc transporter YP_008614126.1 2424700 R 1064551 CDS YP_008614127.1 549479988 complement(2425720..2426502) 1 NC_022525.1 with HisPMQ is involved in the transport of histidine; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein 2426502 1064551002341 IA1_11740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid ABC transporter substrate-binding protein YP_008614127.1 2425720 R 1064551 CDS YP_008614128.1 549482100 2426580..2426702 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2426702 1064551002342 IA1_11745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614128.1 2426580 D 1064551 CDS YP_008614129.1 549479989 complement(2426791..2427360) 1 NC_022525.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2427360 1064551002343 IA1_11750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_008614129.1 2426791 R 1064551 CDS YP_008614130.1 549479990 complement(2427387..2428793) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid permease 2428793 1064551002344 IA1_11755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid permease YP_008614130.1 2427387 R 1064551 CDS YP_008614131.1 549479991 complement(2428857..2429960) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid racemase 2429960 1064551002345 IA1_11760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid racemase YP_008614131.1 2428857 R 1064551 CDS YP_008614132.1 549479992 complement(2429962..2431383) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid transporter 2431383 1064551002346 IA1_11765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid transporter YP_008614132.1 2429962 R 1064551 CDS YP_008614133.1 549479993 complement(2431474..2432871) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminopimelate decarboxylase 2432871 1064551002347 IA1_11770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diaminopimelate decarboxylase YP_008614133.1 2431474 R 1064551 CDS YP_008614134.1 549479994 2433082..2434509 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 2434509 1064551002348 IA1_11775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 regulatory protein YP_008614134.1 2433082 D 1064551 CDS YP_008614135.1 549479995 complement(2434545..2436062) 1 NC_022525.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; amidophosphoribosyltransferase 2436062 1064551002349 IA1_11780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amidophosphoribosyltransferase YP_008614135.1 2434545 R 1064551 CDS YP_008614136.1 549479996 complement(2436100..2436588) 1 NC_022525.1 membrane protein required for colicin V production; Derived by automated computational analysis using gene prediction method: Protein Homology.; colicin V production protein 2436588 1064551002350 IA1_11785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 colicin V production protein YP_008614136.1 2436100 R 1064551 CDS YP_008614137.1 549482101 complement(2436604..2436759) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2436759 1064551002351 IA1_11790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614137.1 2436604 R 1064551 CDS YP_008614138.1 549479997 complement(2436900..2437574) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein DedD 2437574 1064551002352 IA1_11795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein DedD YP_008614138.1 2436900 R 1064551 CDS YP_008614139.1 549479998 complement(2437564..2438832) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2438832 1064551002353 IA1_11800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_008614139.1 2437564 R 1064551 CDS YP_008614140.1 549479999 complement(2438900..2439814) 1 NC_022525.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase subunit beta 2439814 1064551002354 IA1_11805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetyl-CoA carboxylase subunit beta YP_008614140.1 2438900 R 1064551 CDS YP_008614141.1 549480000 complement(2439964..2440623) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2440623 1064551002355 IA1_11810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614141.1 2439964 R 1064551 CDS YP_008614142.1 549480001 complement(2440672..2441484) 1 NC_022525.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase A 2441484 truA 1064551002356 truA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA pseudouridine synthase A YP_008614142.1 2440672 R 1064551 CDS YP_008614143.1 549480002 complement(2441484..2442497) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; semialdehyde dehydrogenase 2442497 1064551002357 IA1_11820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 semialdehyde dehydrogenase YP_008614143.1 2441484 R 1064551 CDS YP_008614144.1 549480003 complement(2442565..2443701) 1 NC_022525.1 catalyzes the formation of 3-hydroxy-2-oxo-4-phosphonooxybutanoate from erythronate-4-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; erythronate-4-phosphate dehydrogenase 2443701 1064551002358 IA1_11825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 erythronate-4-phosphate dehydrogenase YP_008614144.1 2442565 R 1064551 CDS YP_008614145.1 549480004 2443805..2444806 1 NC_022525.1 in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagella biosynthesis regulator 2444806 flk 1064551002359 flk Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagella biosynthesis regulator YP_008614145.1 2443805 D 1064551 CDS YP_008614146.1 549480005 complement(2444803..2445981) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2445981 1064551002360 IA1_11835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614146.1 2444803 R 1064551 CDS YP_008614147.1 549480006 complement(2446161..2446535) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2446535 1064551002361 IA1_11840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614147.1 2446161 R 1064551 CDS YP_008614148.1 549480007 2446708..2446956 1 NC_022525.1 activator of maltose metabolism genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2446956 1064551002362 IA1_11845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614148.1 2446708 D 1064551 CDS YP_008614149.1 549482102 2447125..2447493 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2447493 1064551002363 IA1_11850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614149.1 2447125 D 1064551 CDS YP_008614150.1 549480008 2447493..2448011 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2448011 1064551002364 IA1_11855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614150.1 2447493 D 1064551 CDS YP_008614151.1 549480009 complement(2448078..2448734) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2448734 1064551002365 IA1_11860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614151.1 2448078 R 1064551 CDS YP_008614152.1 549480010 complement(2448832..2450046) 1 NC_022525.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacyl-ACP synthase 2450046 1064551002366 IA1_11865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-oxoacyl-ACP synthase YP_008614152.1 2448832 R 1064551 CDS YP_008614153.1 549480011 2450206..2452206 1 NC_022525.1 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase/FAD-dependent demodification enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA methyltransferase 2452206 mnmC 1064551002367 mnmC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA methyltransferase YP_008614153.1 2450206 D 1064551 CDS YP_008614154.1 549480012 complement(2452258..2452533) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2452533 1064551002368 IA1_11875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614154.1 2452258 R 1064551 CDS YP_008614155.1 549480013 complement(2452566..2453114) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2453114 1064551002369 IA1_11880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614155.1 2452566 R 1064551 CDS YP_008614156.1 549480014 complement(2453114..2453923) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2453923 1064551002370 IA1_11885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614156.1 2453114 R 1064551 CDS YP_008614157.1 549480015 complement(2453923..2454747) 1 NC_022525.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-insensitive murein endopeptidase 2454747 mepA 1064551002371 mepA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 penicillin-insensitive murein endopeptidase YP_008614157.1 2453923 R 1064551 CDS YP_008614158.1 549480016 complement(2454751..2455836) 1 NC_022525.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate synthase 2455836 1064551002372 IA1_11895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chorismate synthase YP_008614158.1 2454751 R 1064551 CDS YP_008614159.1 549480017 complement(2455872..2456804) 1 NC_022525.1 involved in methylation of ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2456804 1064551002373 IA1_11900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_008614159.1 2455872 R 1064551 CDS YP_008614160.1 549480018 2456970..2457521 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase S10 2457521 1064551002374 IA1_11905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidase S10 YP_008614160.1 2456970 D 1064551 CDS YP_008614161.1 549480019 complement(2457621..2458106) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphohistidine phosphatase 2458106 1064551002375 IA1_11910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphohistidine phosphatase YP_008614161.1 2457621 R 1064551 CDS YP_008614162.1 549482103 complement(2458315..2460462) 1 NC_022525.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fatty-acid oxidation protein subunit alpha 2460462 fadJ 1064551002376 fadJ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fatty-acid oxidation protein subunit alpha YP_008614162.1 2458315 R 1064551 CDS YP_008614163.1 549480020 complement(2460462..2461772) 1 NC_022525.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-ketoacyl-CoA thiolase 2461772 fadA 1064551002377 fadA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-ketoacyl-CoA thiolase YP_008614163.1 2460462 R 1064551 CDS YP_008614164.1 549480021 complement(2461950..2462234) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2462234 1064551002378 IA1_11925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614164.1 2461950 R 1064551 CDS YP_008614165.1 549480022 2462599..2463912 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; long-chain fatty acid outer membrane transporter 2463912 1064551002379 IA1_11930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 long-chain fatty acid outer membrane transporter YP_008614165.1 2462599 D 1064551 CDS YP_008614166.1 549480023 complement(2463973..2464728) 1 NC_022525.1 involved in maintaining OM lipid asymmetry; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2464728 1064551002380 IA1_11935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614166.1 2463973 R 1064551 CDS YP_008614167.1 549480024 2465017..2465958 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2465958 1064551002381 IA1_11940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614167.1 2465017 D 1064551 CDS YP_008614168.1 549480025 complement(2466266..2467204) 1 NC_022525.1 outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protease 2467204 1064551002383 IA1_11950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane protease YP_008614168.1 2466266 R 1064551 CDS YP_008614169.1 549480026 complement(2467472..2468719) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2468719 1064551002384 IA1_11955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614169.1 2467472 R 1064551 CDS YP_008614170.1 549480027 complement(2468709..2470715) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine kinase 2470715 1064551002385 IA1_11960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 histidine kinase YP_008614170.1 2468709 R 1064551 CDS YP_008614171.1 549480028 complement(2470712..2471905) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein 2471905 1064551002386 IA1_11965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ABC transporter substrate-binding protein YP_008614171.1 2470712 R 1064551 CDS YP_008614172.1 549480029 2472341..2473732 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerate transporter 2473732 1064551002387 IA1_11970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoglycerate transporter YP_008614172.1 2472341 D 1064551 CDS YP_008614173.1 549480030 complement(2474007..2474249) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2474249 1064551002388 IA1_11975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614173.1 2474007 R 1064551 CDS YP_008614174.1 549482104 complement(2474410..2474523) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transporter 2474523 1064551002389 IA1_11980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008614174.1 2474410 R 1064551 CDS YP_008614175.1 549480031 2474771..2475691 1 NC_022525.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid A biosynthesis palmitoleoyl acyltransferase 2475691 1064551002390 IA1_11985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipid A biosynthesis palmitoleoyl acyltransferase YP_008614175.1 2474771 D 1064551 CDS YP_008614176.1 549480032 complement(2476215..2477453) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate aminotransferase 2477453 1064551002391 IA1_11990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aspartate aminotransferase YP_008614176.1 2476215 R 1064551 CDS YP_008614177.1 549480033 complement(2478173..2479138) 1 NC_022525.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucokinase 2479138 glk 1064551002392 glk Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucokinase YP_008614177.1 2478173 R 1064551 CDS YP_008614178.1 549480034 2479342..2480577 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ion channel protein 2480577 1064551002393 IA1_12000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ion channel protein YP_008614178.1 2479342 D 1064551 CDS YP_008614179.1 549480035 complement(2480597..2482249) 1 NC_022525.1 thiamindiphosphate-dependent; catalyzes the formation of indoleacetaldehyde from indolepyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; indolepyruvate decarboxylase 2482249 1064551002394 IA1_12005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 indolepyruvate decarboxylase YP_008614179.1 2480597 R 1064551 CDS YP_008614180.1 549480036 2482429..2483427 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; L-glyceraldehyde 3-phosphate reductase 2483427 1064551002395 IA1_12010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-glyceraldehyde 3-phosphate reductase YP_008614180.1 2482429 D 1064551 CDS YP_008614181.1 549480037 2483541..2483867 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2483867 1064551002396 IA1_12015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614181.1 2483541 D 1064551 CDS YP_008614182.1 549480038 complement(2483928..2485169) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; manganese transporter 2485169 1064551002397 IA1_12020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 manganese transporter YP_008614182.1 2483928 R 1064551 CDS YP_008614183.1 549480039 2485512..2486714 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside permease 2486714 1064551002398 IA1_12025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleoside permease YP_008614183.1 2485512 D 1064551 CDS YP_008614184.1 549480040 complement(2486767..2488956) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2488956 1064551002399 IA1_12030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614184.1 2486767 R 1064551 CDS YP_008614185.1 549480041 2489562..2489924 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2489924 1064551002402 IA1_12045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614185.1 2489562 D 1064551 CDS YP_008614186.1 549480042 2489926..2490318 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2490318 1064551002403 IA1_12050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614186.1 2489926 D 1064551 CDS YP_008614187.1 549480043 complement(2490372..2491787) 1 NC_022525.1 catalyzes a two-step reaction, first charging an glutamate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaminyl-tRNA synthetase 2491787 gltX 1064551002404 gltX Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutaminyl-tRNA synthetase YP_008614187.1 2490372 R 1064551 CDS YP_008614188.1 549480044 complement(2492602..2493486) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 2493486 1064551002409 IA1_12080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcripitonal regulator YP_008614188.1 2492602 R 1064551 CDS YP_008614189.1 549482105 complement(2493538..2493696) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; XapX domain-containing protein 2493696 1064551002410 IA1_12085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 XapX domain-containing protein YP_008614189.1 2493538 R 1064551 CDS YP_008614190.1 549480045 complement(2493755..2495011) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside permease 2495011 1064551002411 IA1_12090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleoside permease YP_008614190.1 2493755 R 1064551 CDS YP_008614191.1 549482106 complement(2495066..2495899) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; purine nucleoside phosphorylase 2495899 1064551002412 IA1_12095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 purine nucleoside phosphorylase YP_008614191.1 2495066 R 1064551 CDS YP_008614192.1 549480046 2496155..2496916 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2496916 1064551002413 IA1_12100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614192.1 2496155 D 1064551 CDS YP_008614193.1 549480047 complement(2496978..2497904) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 2497904 1064551002414 IA1_12105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcripitonal regulator YP_008614193.1 2496978 R 1064551 CDS YP_008614194.1 549480048 2497994..2498992 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2498992 1064551002415 IA1_12110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614194.1 2497994 D 1064551 CDS YP_008614195.1 549482107 complement(2498989..2499207) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2499207 1064551002416 IA1_12115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614195.1 2498989 R 1064551 CDS YP_008614196.1 549482108 complement(2499209..2501224) 1 NC_022525.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; NAD-dependent DNA ligase LigA 2501224 ligA 1064551002417 ligA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NAD-dependent DNA ligase LigA YP_008614196.1 2499209 R 1064551 CDS YP_008614197.1 549480049 complement(2501296..2502282) 1 NC_022525.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein ZipA 2502282 1064551002418 IA1_12125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein ZipA YP_008614197.1 2501296 R 1064551 CDS YP_008614198.1 549480050 2502514..2503275 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate transporter 2503275 1064551002419 IA1_12130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfate transporter YP_008614198.1 2502514 D 1064551 CDS YP_008614199.1 549480051 2503439..2504410 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine synthase A 2504410 1064551002420 IA1_12135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cysteine synthase A YP_008614199.1 2503439 D 1064551 CDS YP_008614200.1 549482109 complement(2504529..2504654) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2504654 1064551002421 IA1_12140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614200.1 2504529 R 1064551 CDS YP_008614201.1 549480052 2504794..2505051 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter 2505051 1064551002422 IA1_12145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sugar transporter YP_008614201.1 2504794 D 1064551 CDS YP_008614202.1 549480053 2505100..2506827 1 NC_022525.1 Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate-protein phosphotransferase 2506827 1064551002423 IA1_12150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoenolpyruvate-protein phosphotransferase YP_008614202.1 2505100 D 1064551 CDS YP_008614203.1 549480054 2506868..2507377 1 NC_022525.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS glucose transporter subunit IIA 2507377 1064551002424 IA1_12155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS glucose transporter subunit IIA YP_008614203.1 2506868 D 1064551 CDS YP_008614204.1 549480055 complement(2507540..2507779) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2507779 1064551002425 IA1_12160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614204.1 2507540 R 1064551 CDS YP_008614205.1 549480056 complement(2507776..2508642) 1 NC_022525.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxymethylpyrimidine kinase 2508642 pdxK 1064551002426 pdxK Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydroxymethylpyrimidine kinase YP_008614205.1 2507776 R 1064551 CDS YP_008614206.1 549480057 2508725..2510017 1 NC_022525.1 regulator of the ptsHI/crr operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2510017 1064551002427 IA1_12170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614206.1 2508725 D 1064551 CDS YP_008614207.1 549480058 2510032..2510751 1 NC_022525.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine amidotransferase 2510751 1064551002428 IA1_12175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamine amidotransferase YP_008614207.1 2510032 D 1064551 CDS YP_008614208.1 549480059 2510810..2511190 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2511190 1064551002429 IA1_12180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614208.1 2510810 D 1064551 CDS YP_008614209.1 549482110 2511203..2511742 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2511742 1064551002430 IA1_12185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614209.1 2511203 D 1064551 CDS YP_008614210.1 549480060 complement(2511873..2512784) 1 NC_022525.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine synthase B 2512784 cysM 1064551002431 cysM Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cysteine synthase B YP_008614210.1 2511873 R 1064551 CDS YP_008614211.1 549480061 complement(2512852..2513949) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate ABC transporter ATP-binding protein 2513949 1064551002432 IA1_12195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfate ABC transporter ATP-binding protein YP_008614211.1 2512852 R 1064551 CDS YP_008614212.1 549480062 complement(2513939..2514814) 1 NC_022525.1 Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate/thiosulfate transporter permease subunit 2514814 cysW 1064551002433 cysW Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfate/thiosulfate transporter permease subunit YP_008614212.1 2513939 R 1064551 CDS YP_008614213.1 549480063 complement(2514814..2515647) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate/thiosulfate transporter subunit 2515647 1064551002434 IA1_12205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfate/thiosulfate transporter subunit YP_008614213.1 2514814 R 1064551 CDS YP_008614214.1 549480064 complement(2515647..2516663) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate transporter subunit 2516663 1064551002435 IA1_12210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiosulfate transporter subunit YP_008614214.1 2515647 R 1064551 CDS YP_008614215.1 549480065 complement(2516821..2517612) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; short-chain dehydrogenase 2517612 1064551002436 IA1_12215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 short-chain dehydrogenase YP_008614215.1 2516821 R 1064551 CDS YP_008614216.1 549480066 complement(2517850..2518749) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; deferrochelatase/peroxidase YfeX 2518749 1064551002437 IA1_12220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 deferrochelatase/peroxidase YfeX YP_008614216.1 2517850 R 1064551 CDS YP_008614217.1 549480067 complement(2518844..2519419) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; RpoE-regulated lipoprotein 2519419 1064551002438 IA1_12225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RpoE-regulated lipoprotein YP_008614217.1 2518844 R 1064551 CDS YP_008614218.1 549480068 complement(2519481..2519930) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2519930 1064551002439 IA1_12230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614218.1 2519481 R 1064551 CDS YP_008614219.1 549482111 complement(2519917..2520342) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acetyltransferase 2520342 1064551002440 IA1_12235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetyltransferase YP_008614219.1 2519917 R 1064551 CDS YP_008614220.1 549480069 2520555..2521424 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase 2521424 1064551002441 IA1_12240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetylmuramoyl-L-alanine amidase YP_008614220.1 2520555 D 1064551 CDS YP_008614221.1 549480070 2521427..2522326 1 NC_022525.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; coproporphyrinogen III oxidase 2522326 1064551002442 IA1_12245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 coproporphyrinogen III oxidase YP_008614221.1 2521427 D 1064551 CDS YP_008614222.1 549482112 2522488..2522676 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2522676 1064551002443 IA1_12250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614222.1 2522488 D 1064551 CDS YP_008614223.1 549480071 complement(2523125..2524177) 1 NC_022525.1 activates the transcription of the ethanolamine utilization operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2524177 1064551002444 IA1_12255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614223.1 2523125 R 1064551 CDS YP_008614224.1 549480072 complement(2524225..2524719) 1 NC_022525.1 ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein 2524719 1064551002445 IA1_12260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carboxysome shell protein YP_008614224.1 2524225 R 1064551 CDS YP_008614225.1 549480073 complement(2524732..2525391) 1 NC_022525.1 carboxysome structural protein involved in ethanolamine utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutL 2525391 1064551002446 IA1_12265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ethanolamine utilization protein EutL YP_008614225.1 2524732 R 1064551 CDS YP_008614226.1 549480074 complement(2525401..2526297) 1 NC_022525.1 catalyzes the formation of acetaldehyde from ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine ammonia-lyase small subunit 2526297 1064551002447 IA1_12270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ethanolamine ammonia-lyase small subunit YP_008614226.1 2525401 R 1064551 CDS YP_008614227.1 549482113 complement(2526316..2527677) 1 NC_022525.1 with EutC catalyzes the formation of acetaldehyde and ammonia from ethanolamine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ethanolamine ammonia lyase large subunit 2527677 1064551002448 IA1_12275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ethanolamine ammonia lyase large subunit YP_008614227.1 2526316 R 1064551 CDS YP_008614228.1 549480075 complement(2527689..2529092) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutA 2529092 eutA 1064551002449 eutA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ethanolamine utilization protein EutA YP_008614228.1 2527689 R 1064551 CDS YP_008614229.1 549480076 complement(2529089..2530315) 1 NC_022525.1 may be involved in the transport of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutH 2530315 1064551002450 IA1_12285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ethanolamine utilization protein EutH YP_008614229.1 2529089 R 1064551 CDS YP_008614230.1 549480077 complement(2530435..2531622) 1 NC_022525.1 aldehyde reductase; catalyzes the conversion of acetaldehyde to ethanol; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanol dehydrogenase 2531622 1064551002451 IA1_12290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ethanol dehydrogenase YP_008614230.1 2530435 R 1064551 CDS YP_008614231.1 549480078 complement(2531612..2532451) 1 NC_022525.1 possible chaperonin; may be involved in the assembly of the carboxysome; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutJ 2532451 1064551002452 IA1_12295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ethanolamine utilization protein EutJ YP_008614231.1 2531612 R 1064551 CDS YP_008614232.1 549480079 complement(2532462..2533865) 1 NC_022525.1 ethanolamine utilization protein; catalyzes the formation of acetyl-CoA from acetaldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase 2533865 1064551002453 IA1_12300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aldehyde dehydrogenase YP_008614232.1 2532462 R 1064551 CDS YP_008614233.1 549480080 complement(2533877..2534176) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine catabolic microcompartment shell protein EutN 2534176 1064551002454 IA1_12305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ethanolamine catabolic microcompartment shell protein EutN YP_008614233.1 2533877 R 1064551 CDS YP_008614234.1 549480081 complement(2534277..2534567) 1 NC_022525.1 ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein 2534567 1064551002455 IA1_12310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carboxysome shell protein YP_008614234.1 2534277 R 1064551 CDS YP_008614235.1 549480082 complement(2534608..2535624) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotransacetylase 2535624 1064551002456 IA1_12315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphotransacetylase YP_008614235.1 2534608 R 1064551 CDS YP_008614236.1 549480083 complement(2535621..2536424) 1 NC_022525.1 catalyzes the conversion of cob(I)yrinic acid a,c-diamide to adenosylcob(III)yrinic acid a,c-diamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization cobalamin adenosyltransferase 2536424 1064551002457 IA1_12320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ethanolamine utilization cobalamin adenosyltransferase YP_008614236.1 2535621 R 1064551 CDS YP_008614237.1 549480084 complement(2536421..2537110) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutQ 2537110 1064551002458 IA1_12325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ethanolamine utilization protein EutQ YP_008614237.1 2536421 R 1064551 CDS YP_008614238.1 549480085 complement(2537088..2537567) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutP 2537567 1064551002459 IA1_12330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ethanolamine utilization protein EutP YP_008614238.1 2537088 R 1064551 CDS YP_008614239.1 549480086 complement(2537580..2537915) 1 NC_022525.1 ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein 2537915 1064551002460 IA1_12335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carboxysome shell protein YP_008614239.1 2537580 R 1064551 CDS YP_008614240.1 549480087 complement(2538333..2540612) 1 NC_022525.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malic enzyme 2540612 1064551002461 IA1_12340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 malic enzyme YP_008614240.1 2538333 R 1064551 CDS YP_008614241.1 549480088 2540884..2541834 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transaldolase 2541834 1064551002462 IA1_12345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transaldolase YP_008614241.1 2540884 D 1064551 CDS YP_008614242.1 549480089 2541854..2543854 1 NC_022525.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transketolase 2543854 1064551002463 IA1_12350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transketolase YP_008614242.1 2541854 D 1064551 CDS YP_008614243.1 549480090 complement(2543917..2544147) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2544147 1064551002464 IA1_12355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614243.1 2543917 R 1064551 CDS YP_008614244.1 549480091 complement(2544275..2545318) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2545318 1064551002465 IA1_12360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614244.1 2544275 R 1064551 CDS YP_008614245.1 549480092 complement(2545443..2546018) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GDP-mannose pyrophosphatase NudK 2546018 1064551002466 IA1_12365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GDP-mannose pyrophosphatase NudK YP_008614245.1 2545443 R 1064551 CDS YP_008614246.1 549480093 2546222..2547520 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; esterase 2547520 1064551002467 IA1_12370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 esterase YP_008614246.1 2546222 D 1064551 CDS YP_008614247.1 549480094 2550116..2551816 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate/nitrite sensor protein NarQ 2551816 1064551002468 IA1_12385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrate/nitrite sensor protein NarQ YP_008614247.1 2550116 D 1064551 CDS YP_008614248.1 549480095 2552001..2555114 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2555114 1064551002469 IA1_12390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008614248.1 2552001 D 1064551 CDS YP_008614249.1 549480096 2555688..2556044 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; reductase 2556044 1064551002470 IA1_12395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 reductase YP_008614249.1 2555688 D 1064551 CDS YP_008614250.1 549480097 2556048..2557175 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyl-diaminopimelate desuccinylase 2557175 1064551002471 IA1_12400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 succinyl-diaminopimelate desuccinylase YP_008614250.1 2556048 D 1064551 CDS YP_008614251.1 549482114 2557203..2557403 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2557403 1064551002472 IA1_12405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614251.1 2557203 D 1064551 CDS YP_008614252.1 549480098 complement(2557430..2559448) 1 NC_022525.1 cetylates the wobble base C34 of the elongation-specific methionine tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine tRNA cytidine acetyltransferase 2559448 1064551002473 IA1_12410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methionine tRNA cytidine acetyltransferase YP_008614252.1 2557430 R 1064551 CDS YP_008614253.1 549480099 complement(2559464..2560327) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2560327 1064551002474 IA1_12415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614253.1 2559464 R 1064551 CDS YP_008614254.1 549480100 complement(2560458..2561171) 1 NC_022525.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylaminoimidazole-succinocarboxamide synthase 2561171 1064551002475 IA1_12420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_008614254.1 2560458 R 1064551 CDS YP_008614255.1 549480101 complement(2561346..2562380) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 2562380 1064551002476 IA1_12425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein YP_008614255.1 2561346 R 1064551 CDS YP_008614256.1 549480102 complement(2562397..2563275) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrodipicolinate synthase 2563275 1064551002477 IA1_12430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydrodipicolinate synthase YP_008614256.1 2562397 R 1064551 CDS YP_008614257.1 549480103 2563421..2563993 1 NC_022525.1 negative transcriptional regulator of the gcvTHP operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine cleavage system regulatory protein 2563993 gcvR 1064551002478 gcvR Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycine cleavage system regulatory protein YP_008614257.1 2563421 D 1064551 CDS YP_008614258.1 549480104 2563993..2564463 1 NC_022525.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin-dependent thiol peroxidase 2564463 bcp 1064551002479 bcp Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thioredoxin-dependent thiol peroxidase YP_008614258.1 2563993 D 1064551 CDS YP_008614259.1 549480105 complement(2564510..2565649) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerate kinase 2565649 1064551002480 IA1_12445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerate kinase YP_008614259.1 2564510 R 1064551 CDS YP_008614260.1 549482115 complement(2565655..2566923) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; gluconate:proton symporter 2566923 1064551002481 IA1_12450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 gluconate:proton symporter YP_008614260.1 2565655 R 1064551 CDS YP_008614261.1 549482116 complement(2566991..2568172) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; XRE family transcriptional regulator 2568172 1064551002482 IA1_12455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 XRE family transcriptional regulator YP_008614261.1 2566991 R 1064551 CDS YP_008614262.1 549480106 complement(2568455..2569522) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; permase 2569522 1064551002483 IA1_12460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 permase YP_008614262.1 2568455 R 1064551 CDS YP_008614263.1 549480107 2569730..2571193 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2571193 1064551002484 IA1_12465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614263.1 2569730 D 1064551 CDS YP_008614264.1 549480108 2571233..2571592 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; arsenate reductase 2571592 1064551002485 IA1_12470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arsenate reductase YP_008614264.1 2571233 D 1064551 CDS YP_008614265.1 549480109 complement(2571619..2572344) 1 NC_022525.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA replication initiation factor 2572344 1064551002486 IA1_12475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA replication initiation factor YP_008614265.1 2571619 R 1064551 CDS YP_008614266.1 549480110 complement(2572415..2573704) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil transporter 2573704 1064551002487 IA1_12480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 uracil transporter YP_008614266.1 2572415 R 1064551 CDS YP_008614267.1 549480111 complement(2573792..2574418) 1 NC_022525.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil phosphoribosyltransferase 2574418 upp 1064551002488 upp Salmonella enterica subsp. enterica serovar Thompson str. RM6836 uracil phosphoribosyltransferase YP_008614267.1 2573792 R 1064551 CDS YP_008614268.1 549480112 2574817..2575869 1 NC_022525.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylaminoimidazole synthetase 2575869 1064551002489 IA1_12490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoribosylaminoimidazole synthetase YP_008614268.1 2574817 D 1064551 CDS YP_008614269.1 549480113 2575869..2576507 1 NC_022525.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylglycinamide formyltransferase 2576507 purN 1064551002490 purN Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoribosylglycinamide formyltransferase YP_008614269.1 2575869 D 1064551 CDS YP_008614270.1 549480114 2576696..2578762 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; polyphosphate kinase 2578762 1064551002491 IA1_12500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 polyphosphate kinase YP_008614270.1 2576696 D 1064551 CDS YP_008614271.1 549480115 2578767..2580308 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; exopolyphosphatase 2580308 1064551002492 IA1_12505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exopolyphosphatase YP_008614271.1 2578767 D 1064551 CDS YP_008614272.1 549480116 complement(2580344..2582557) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase 2582557 1064551002493 IA1_12510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cyclic di-GMP phosphodiesterase YP_008614272.1 2580344 R 1064551 CDS YP_008614273.1 549482117 2582970..2583161 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2583161 1064551002494 IA1_12515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614273.1 2582970 D 1064551 CDS YP_008614274.1 549482118 2583498..2583959 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2583959 1064551002495 IA1_12520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614274.1 2583498 D 1064551 CDS YP_008614275.1 549482119 2583959..2584273 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2584273 1064551002496 IA1_12525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614275.1 2583959 D 1064551 CDS YP_008614276.1 549482120 complement(2584293..2584583) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2584583 1064551002497 IA1_12530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614276.1 2584293 R 1064551 CDS YP_008614277.1 549480117 complement(2584806..2586383) 1 NC_022525.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; GMP synthase 2586383 guaA 1064551002498 guaA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GMP synthase YP_008614277.1 2584806 R 1064551 CDS YP_008614278.1 549480118 complement(2586453..2587919) 1 NC_022525.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; inosine 5'-monophosphate dehydrogenase 2587919 1064551002499 IA1_12540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 inosine 5'-monophosphate dehydrogenase YP_008614278.1 2586453 R 1064551 CDS YP_008614279.1 549480119 2588080..2589429 1 NC_022525.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VII large subunit 2589429 xseA 1064551002500 xseA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exodeoxyribonuclease VII large subunit YP_008614279.1 2588080 D 1064551 CDS YP_008614280.1 549482121 complement(2589591..2595629) 1 NC_022525.1 binds fibronectin; may be required for intestinal persistence; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; AIDA autotransporter 2595629 1064551002501 IA1_12550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 AIDA autotransporter YP_008614280.1 2589591 R 1064551 CDS YP_008614281.1 549482122 complement(2596332..2603639) 1 NC_022525.1 may be involved in intestinal colonization; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2603639 1064551002502 IA1_12555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614281.1 2596332 R 1064551 CDS YP_008614282.1 549482123 complement(2603805..2605496) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2605496 1064551002503 IA1_12560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614282.1 2603805 R 1064551 CDS YP_008614283.1 549482124 complement(2605521..2609384) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; outer membrane protein RatA 2609384 1064551002504 IA1_12565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane protein RatA YP_008614283.1 2605521 R 1064551 CDS YP_008614284.1 549480120 complement(2609522..2610481) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2610481 1064551002505 IA1_12570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614284.1 2609522 R 1064551 CDS YP_008614285.1 549480121 complement(2610539..2612731) 1 NC_022525.1 involved in invasion of epithelial cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; intimin 2612731 1064551002506 IA1_12575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 intimin YP_008614285.1 2610539 R 1064551 CDS YP_008614286.1 549482125 complement(2613077..2613298) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2613298 1064551002507 IA1_12580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614286.1 2613077 R 1064551 CDS YP_008614287.1 549480122 complement(2613387..2614901) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein Der 2614901 1064551002508 IA1_12585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GTP-binding protein Der YP_008614287.1 2613387 R 1064551 CDS YP_008614288.1 549480123 complement(2614976..2616154) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane biogenesis protein BamB 2616154 1064551002509 IA1_12590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane biogenesis protein BamB YP_008614288.1 2614976 R 1064551 CDS YP_008614289.1 549480124 complement(2616165..2616785) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2616785 1064551002510 IA1_12595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614289.1 2616165 R 1064551 CDS YP_008614290.1 549480125 complement(2616799..2618073) 1 NC_022525.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidyl-tRNA synthetase 2618073 hisS 1064551002511 hisS Salmonella enterica subsp. enterica serovar Thompson str. RM6836 histidyl-tRNA synthetase YP_008614290.1 2616799 R 1064551 CDS YP_008614291.1 549480126 complement(2618184..2619302) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2619302 1064551002512 IA1_12605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_008614291.1 2618184 R 1064551 CDS YP_008614292.1 549480127 complement(2619329..2620333) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoskeleton protein rodZ 2620333 1064551002513 IA1_12610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytoskeleton protein rodZ YP_008614292.1 2619329 R 1064551 CDS YP_008614293.1 549480128 complement(2620625..2621791) 1 NC_022525.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S rRNA methyltransferase 2621791 1064551002514 IA1_12615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S rRNA methyltransferase YP_008614293.1 2620625 R 1064551 CDS YP_008614294.1 549480129 complement(2621998..2622429) 1 NC_022525.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside diphosphate kinase 2622429 1064551002515 IA1_12620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleoside diphosphate kinase YP_008614294.1 2621998 R 1064551 CDS YP_008614295.1 549480130 complement(2622550..2623413) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; polyferredoxin 2623413 1064551002516 IA1_12625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 polyferredoxin YP_008614295.1 2622550 R 1064551 CDS YP_008614296.1 549480131 complement(2623413..2624222) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit C 2624222 1064551002517 IA1_12630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dimethyl sulfoxide reductase subunit C YP_008614296.1 2623413 R 1064551 CDS YP_008614297.1 549480132 complement(2624215..2624844) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 4Fe-4S ferredoxin 2624844 1064551002518 IA1_12635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4Fe-4S ferredoxin YP_008614297.1 2624215 R 1064551 CDS YP_008614298.1 549480133 complement(2624841..2627246) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DMSO reductase subunit A 2627246 1064551002519 IA1_12640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DMSO reductase subunit A YP_008614298.1 2624841 R 1064551 CDS YP_008614299.1 549480134 complement(2627375..2629690) 1 NC_022525.1 penicillin-insensitive transglycosylase/transpeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 1C 2629690 1064551002520 IA1_12645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 penicillin-binding protein 1C YP_008614299.1 2627375 R 1064551 CDS YP_008614300.1 549480135 complement(2629691..2634625) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2634625 1064551002521 IA1_12650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614300.1 2629691 R 1064551 CDS YP_008614301.1 549482126 complement(2634707..2634835) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2634835 1064551002522 IA1_12655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614301.1 2634707 R 1064551 CDS YP_008614302.1 549482127 2634834..2635676 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 3-mercaptopyruvate sulfurtransferase 2635676 1064551002523 IA1_12660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-mercaptopyruvate sulfurtransferase YP_008614302.1 2634834 D 1064551 CDS YP_008614303.1 549482128 complement(2635813..2635935) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2635935 1064551002524 IA1_12665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614303.1 2635813 R 1064551 CDS YP_008614304.1 549480136 2635923..2636591 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2636591 1064551002525 IA1_12670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614304.1 2635923 D 1064551 CDS YP_008614305.1 549480137 complement(2637160..2637945) 1 NC_022525.1 enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology.; enhanced serine sensitivity protein SseB 2637945 1064551002526 IA1_12675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 enhanced serine sensitivity protein SseB YP_008614305.1 2637160 R 1064551 CDS YP_008614306.1 549480138 complement(2638046..2639329) 1 NC_022525.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase B 2639329 1064551002527 IA1_12680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aminopeptidase B YP_008614306.1 2638046 R 1064551 CDS YP_008614307.1 549480139 complement(2639383..2639583) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2639583 1064551002528 IA1_12685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614307.1 2639383 R 1064551 CDS YP_008614308.1 549480140 complement(2639595..2639930) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 2Fe-2S ferredoxin 2639930 1064551002529 IA1_12690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2Fe-2S ferredoxin YP_008614308.1 2639595 R 1064551 CDS YP_008614309.1 549480141 complement(2639932..2641782) 1 NC_022525.1 involved in the maturation of iron-sulfur cluster-containing proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone protein HscA 2641782 hscA 1064551002530 hscA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chaperone protein HscA YP_008614309.1 2639932 R 1064551 CDS YP_008614310.1 549480142 complement(2641795..2642310) 1 NC_022525.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; co-chaperone HscB 2642310 hscB 1064551002531 hscB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 co-chaperone HscB YP_008614310.1 2641795 R 1064551 CDS YP_008614311.1 549480143 complement(2642506..2642829) 1 NC_022525.1 forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster assembly protein 2642829 iscA 1064551002532 iscA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron-sulfur cluster assembly protein YP_008614311.1 2642506 R 1064551 CDS YP_008614312.1 549480144 complement(2642858..2643244) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; FeS cluster assembly scaffold IscU 2643244 1064551002533 IA1_12710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 FeS cluster assembly scaffold IscU YP_008614312.1 2642858 R 1064551 CDS YP_008614313.1 549480145 complement(2643272..2644486) 1 NC_022525.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase 2644486 1064551002534 IA1_12715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cysteine desulfurase YP_008614313.1 2643272 R 1064551 CDS YP_008614314.1 549480146 complement(2644667..2645161) 1 NC_022525.1 regulates the expression of the iscRSUA operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2645161 1064551002535 IA1_12720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614314.1 2644667 R 1064551 CDS YP_008614315.1 549480147 complement(2645321..2646052) 1 NC_022525.1 catalyzes the fromation of 2'O-methylated cytidine or 2'O-methylated uridine at position 32 in tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA methyltransferase 2646052 1064551002536 IA1_12725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA methyltransferase YP_008614315.1 2645321 R 1064551 CDS YP_008614316.1 549480148 2646171..2646974 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; inositol monophosphatase 2646974 1064551002537 IA1_12730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 inositol monophosphatase YP_008614316.1 2646171 D 1064551 CDS YP_008614317.1 549482129 2647119..2647997 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2647997 1064551002538 IA1_12735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614317.1 2647119 D 1064551 CDS YP_008614318.1 549480149 2648179..2649222 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite reductase subunit A 2649222 1064551002539 IA1_12740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfite reductase subunit A YP_008614318.1 2648179 D 1064551 CDS YP_008614319.1 549480150 2649226..2650044 1 NC_022525.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; Derived by automated computational analysis using gene prediction method: Protein Homology.; anaerobic sulfite reductase subunit B 2650044 1064551002540 IA1_12745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 anaerobic sulfite reductase subunit B YP_008614319.1 2649226 D 1064551 CDS YP_008614320.1 549480151 2650055..2651068 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite reductase subunit C 2651068 1064551002541 IA1_12750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfite reductase subunit C YP_008614320.1 2650055 D 1064551 CDS YP_008614321.1 549480152 complement(2651069..2652055) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel transporter 2652055 1064551002542 IA1_12755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nickel transporter YP_008614321.1 2651069 R 1064551 CDS YP_008614322.1 549480153 complement(2652046..2652714) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2652714 1064551002543 IA1_12760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614322.1 2652046 R 1064551 CDS YP_008614323.1 549480154 2652810..2654087 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; stationary phase inducible protein CsiE 2654087 1064551002544 IA1_12765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 stationary phase inducible protein CsiE YP_008614323.1 2652810 D 1064551 CDS YP_008614324.1 549480155 complement(2654082..2655221) 1 NC_022525.1 transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phenylpropionic acid MFS transporter 2655221 1064551002545 IA1_12770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-phenylpropionic acid MFS transporter YP_008614324.1 2654082 R 1064551 CDS YP_008614325.1 549480156 complement(2655417..2656670) 1 NC_022525.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine hydroxymethyltransferase 2656670 glyA 1064551002546 glyA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 serine hydroxymethyltransferase YP_008614325.1 2655417 R 1064551 CDS YP_008614326.1 549480157 2656995..2658185 1 NC_022525.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 2658185 1064551002547 IA1_12780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 YP_008614326.1 2656995 D 1064551 CDS YP_008614327.1 549480158 2658367..2659911 1 NC_022525.1 regulates the cadBA operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2659911 1064551002548 IA1_12785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614327.1 2658367 D 1064551 CDS YP_008614328.1 549480159 2660272..2661603 1 NC_022525.1 antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine:agmatine antiporter 2661603 cadB 1064551002549 cadB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginine:agmatine antiporter YP_008614328.1 2660272 D 1064551 CDS YP_008614329.1 549480160 2661686..2663830 1 NC_022525.1 constitutive; catalyzes the formation of cadaverine from lysine; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine decarboxylase CadA 2663830 1064551002550 IA1_12795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lysine decarboxylase CadA YP_008614329.1 2661686 D 1064551 CDS YP_008614330.1 549480161 2663886..2665346 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 2665346 1064551002551 IA1_12800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter permease YP_008614330.1 2663886 D 1064551 CDS YP_008614331.1 549480162 complement(2665395..2665733) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulatory protein P-II 2665733 1064551002552 IA1_12805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrogen regulatory protein P-II YP_008614331.1 2665395 R 1064551 CDS YP_008614332.1 549480163 complement(2665810..2667147) 1 NC_022525.1 with GlrK is part of a two-component signal transduction system regulating glmY; Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator 2667147 1064551002553 IA1_12810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 response regulator YP_008614332.1 2665810 R 1064551 CDS YP_008614333.1 549482130 complement(2667144..2667830) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2667830 1064551002554 IA1_12815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614333.1 2667144 R 1064551 CDS YP_008614334.1 549480164 complement(2667910..2669352) 1 NC_022525.1 part of the GlrKR two-component signal transduction system involved in the regulation of glmY; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase 2669352 1064551002555 IA1_12820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensory histidine kinase YP_008614334.1 2667910 R 1064551 CDS YP_008614335.1 549482131 complement(2669990..2673877) 1 NC_022525.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphoribosylformylglycinamidine synthase 2673877 1064551002556 IA1_12825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoribosylformylglycinamidine synthase YP_008614335.1 2669990 R 1064551 CDS YP_008614336.1 549480165 2674133..2675677 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2675677 1064551002557 IA1_12830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614336.1 2674133 D 1064551 CDS YP_008614337.1 549480166 complement(2675728..2676279) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosine deaminase 2676279 1064551002558 IA1_12835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adenosine deaminase YP_008614337.1 2675728 R 1064551 CDS YP_008614338.1 549482132 complement(2676304..2676939) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2676939 1064551002559 IA1_12840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614338.1 2676304 R 1064551 CDS YP_008614339.1 549480167 complement(2676943..2678304) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIC 2678304 1064551002560 IA1_12845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sugar transporter subunit IIC YP_008614339.1 2676943 R 1064551 CDS YP_008614340.1 549480168 complement(2678315..2679208) 1 NC_022525.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramic acid-6-phosphate etherase 2679208 1064551002561 IA1_12850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetylmuramic acid-6-phosphate etherase YP_008614340.1 2678315 R 1064551 CDS YP_008614341.1 549480169 2679324..2680172 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2680172 1064551002562 IA1_12855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614341.1 2679324 D 1064551 CDS YP_008614342.1 549480170 complement(2680211..2681128) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-dehydropantoate 2-reductase 2681128 1064551002563 IA1_12860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-dehydropantoate 2-reductase YP_008614342.1 2680211 R 1064551 CDS YP_008614343.1 549480171 complement(2681150..2682346) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 2682346 1064551002564 IA1_12865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 permease YP_008614343.1 2681150 R 1064551 CDS YP_008614344.1 549480172 2682462..2683388 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2683388 1064551002565 IA1_12870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614344.1 2682462 D 1064551 CDS YP_008614345.1 549480173 2683426..2683686 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin 2683686 1064551002566 IA1_12875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferredoxin YP_008614345.1 2683426 D 1064551 CDS YP_008614346.1 549480174 complement(2683798..2684178) 1 NC_022525.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4'-phosphopantetheinyl transferase 2684178 acpS 1064551002567 acpS Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4'-phosphopantetheinyl transferase YP_008614346.1 2683798 R 1064551 CDS YP_008614347.1 549480175 complement(2684178..2684909) 1 NC_022525.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxine 5'-phosphate synthase 2684909 1064551002568 IA1_12885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyridoxine 5'-phosphate synthase YP_008614347.1 2684178 R 1064551 CDS YP_008614348.1 549480176 complement(2684921..2685649) 1 NC_022525.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair protein RecO 2685649 recO 1064551002569 recO Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA repair protein RecO YP_008614348.1 2684921 R 1064551 CDS YP_008614349.1 549480177 complement(2685661..2686566) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase Era 2686566 1064551002570 IA1_12895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GTPase Era YP_008614349.1 2685661 R 1064551 CDS YP_008614350.1 549480178 complement(2686563..2687300) 1 NC_022525.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease III 2687300 rnc 1064551002571 rnc Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonuclease III YP_008614350.1 2686563 R 1064551 CDS YP_008614351.1 549480179 complement(2687517..2688491) 1 NC_022525.1 catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; signal peptidase 2688491 1064551002572 IA1_12905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 signal peptidase YP_008614351.1 2687517 R 1064551 CDS YP_008614352.1 549480180 complement(2688508..2690307) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor 4 2690307 1064551002573 IA1_12910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 elongation factor 4 YP_008614352.1 2688508 R 1064551 CDS YP_008614353.1 549480181 complement(2690559..2691038) 1 NC_022525.1 involved in the reduction of the SoxR iron-sulfur cluster; Derived by automated computational analysis using gene prediction method: Protein Homology.; SoxR reducing system protein RseC 2691038 1064551002574 IA1_12915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 SoxR reducing system protein RseC YP_008614353.1 2690559 R 1064551 CDS YP_008614354.1 549480182 complement(2691035..2691991) 1 NC_022525.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-sigma E factor 2691991 rseB 1064551002575 rseB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 anti-sigma E factor YP_008614354.1 2691035 R 1064551 CDS YP_008614355.1 549480183 complement(2691991..2692641) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-RNA polymerase sigma factor SigE 2692641 1064551002576 IA1_12925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 anti-RNA polymerase sigma factor SigE YP_008614355.1 2691991 R 1064551 CDS YP_008614356.1 549480184 complement(2692673..2693248) 1 NC_022525.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor AlgU 2693248 1064551002577 IA1_12930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA polymerase sigma factor AlgU YP_008614356.1 2692673 R 1064551 CDS YP_008614357.1 549480185 2693673..2695295 1 NC_022525.1 catalyzes the formation of oxaloacetate from L-aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-aspartate oxidase 2695295 1064551002578 IA1_12935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-aspartate oxidase YP_008614357.1 2693673 D 1064551 CDS YP_008614358.1 549480186 complement(2695280..2696017) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (adenine-N6)-methyltransferase 2696017 1064551002579 IA1_12940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA (adenine-N6)-methyltransferase YP_008614358.1 2695280 R 1064551 CDS YP_008614359.1 549480187 2696148..2697482 1 NC_022525.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 2697482 1064551002580 IA1_12945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA helicase YP_008614359.1 2696148 D 1064551 CDS YP_008614360.1 549480188 complement(2697500..2698444) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 2698444 1064551002581 IA1_12950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcriptional regulator YP_008614360.1 2697500 R 1064551 CDS YP_008614361.1 549480189 2698502..2699089 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine/O-acetylserine exporter 2699089 1064551002582 IA1_12955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cysteine/O-acetylserine exporter YP_008614361.1 2698502 D 1064551 CDS YP_008614362.1 549480190 complement(2699151..2699534) 1 NC_022525.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; autonomous glycyl radical cofactor GrcA 2699534 1064551002583 IA1_12960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 autonomous glycyl radical cofactor GrcA YP_008614362.1 2699151 R 1064551 CDS YP_008614363.1 549480191 2699853..2700542 1 NC_022525.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil-DNA glycosylase 2700542 1064551002584 IA1_12965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 uracil-DNA glycosylase YP_008614363.1 2699853 D 1064551 CDS YP_008614364.1 549480192 complement(2700658..2701695) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase 2701695 1064551002585 IA1_12970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methyltransferase YP_008614364.1 2700658 R 1064551 CDS YP_008614365.1 549480193 2701899..2702318 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin 2702318 1064551002586 IA1_12975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thioredoxin YP_008614365.1 2701899 D 1064551 CDS YP_008614366.1 549480194 2702391..2703071 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2703071 1064551002587 IA1_12980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614366.1 2702391 D 1064551 CDS YP_008614367.1 549480195 2703125..2705785 1 NC_022525.1 catalyzes the acetylation of lysine; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein lysine acetyltransferase 2705785 1064551002588 IA1_12985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protein lysine acetyltransferase YP_008614367.1 2703125 D 1064551 CDS YP_008614368.1 549480196 2705900..2707255 1 NC_022525.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylserine synthase 2707255 pssA 1064551002589 pssA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphatidylserine synthase YP_008614368.1 2705900 D 1064551 CDS YP_008614369.1 549480197 2707300..2707623 1 NC_022525.1 required for high salt suppression of motility; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 2707623 1064551002590 IA1_12995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein YP_008614369.1 2707300 D 1064551 CDS YP_008614370.1 549480198 complement(2707620..2708921) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ketoglutarate transporter 2708921 1064551002591 IA1_13000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alpha-ketoglutarate transporter YP_008614370.1 2707620 R 1064551 CDS YP_008614371.1 549480199 complement(2709025..2709480) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2709480 1064551002592 IA1_13005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614371.1 2709025 R 1064551 CDS YP_008614372.1 549480200 complement(2715370..2717943) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; protein disaggregation chaperone 2717943 1064551002597 IA1_13030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protein disaggregation chaperone YP_008614372.1 2715370 R 1064551 CDS YP_008614373.1 549482133 complement(2718073..2718804) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2718804 1064551002598 IA1_13035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614373.1 2718073 R 1064551 CDS YP_008614374.1 549480201 complement(2718801..2719781) 1 NC_022525.1 catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA/tRNA pseudouridine synthase A 2719781 1064551002599 IA1_13040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 23S rRNA/tRNA pseudouridine synthase A YP_008614374.1 2718801 R 1064551 CDS YP_008614375.1 549480202 2719913..2720650 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane biogenesis protein BamD 2720650 1064551002600 IA1_13045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane biogenesis protein BamD YP_008614375.1 2719913 D 1064551 CDS YP_008614376.1 549480203 2720922..2721260 1 NC_022525.1 associated with 30S ribosomal subunit; interferes with translation elongation; Derived by automated computational analysis using gene prediction method: Protein Homology.; translation inhibitor protein RaiA 2721260 1064551002601 IA1_13050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 translation inhibitor protein RaiA YP_008614376.1 2720922 D 1064551 CDS YP_008614377.1 549480204 2721511..2722671 1 NC_022525.1 catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional chorismate mutase/prephenate dehydratase 2722671 pheA 1064551002602 pheA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional chorismate mutase/prephenate dehydratase YP_008614377.1 2721511 D 1064551 CDS YP_008614378.1 549480205 complement(2722632..2723540) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; gluconolactonase 2723540 1064551002603 IA1_13060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 gluconolactonase YP_008614378.1 2722632 R 1064551 CDS YP_008614379.1 549480206 complement(2723598..2724719) 1 NC_022525.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate mutase 2724719 tyrA 1064551002604 tyrA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chorismate mutase YP_008614379.1 2723598 R 1064551 CDS YP_008614380.1 549480207 complement(2724729..2725799) 1 NC_022525.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-2-dehydro-3-deoxyheptonate aldolase 2725799 1064551002605 IA1_13070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phospho-2-dehydro-3-deoxyheptonate aldolase YP_008614380.1 2724729 R 1064551 CDS YP_008614381.1 549480208 2726239..2726757 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2726757 1064551002606 IA1_13075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614381.1 2726239 D 1064551 CDS YP_008614382.1 549480209 2726750..2727970 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase 2727970 1064551002607 IA1_13080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diguanylate cyclase YP_008614382.1 2726750 D 1064551 CDS YP_008614383.1 549480210 complement(2728127..2728474) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L19 2728474 1064551002608 IA1_13085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L19 YP_008614383.1 2728127 R 1064551 CDS YP_008614384.1 549480211 complement(2728515..2729282) 1 NC_022525.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (guanine-N1)-methyltransferase 2729282 trmD 1064551002609 trmD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA (guanine-N1)-methyltransferase YP_008614384.1 2728515 R 1064551 CDS YP_008614385.1 549480212 complement(2729327..2729875) 1 NC_022525.1 Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA-processing protein M 2729875 rimM 1064551002610 rimM Salmonella enterica subsp. enterica serovar Thompson str. RM6836 16S rRNA-processing protein M YP_008614385.1 2729327 R 1064551 CDS YP_008614386.1 549480213 complement(2729894..2730142) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S16 2730142 1064551002611 IA1_13100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S16 YP_008614386.1 2729894 R 1064551 CDS YP_008614387.1 549480214 complement(2730456..2731817) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; signal recognition particle protein Srp54 2731817 1064551002612 IA1_13105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 signal recognition particle protein Srp54 YP_008614387.1 2730456 R 1064551 CDS YP_008614388.1 549480215 2731983..2732774 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2732774 1064551002613 IA1_13110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614388.1 2731983 D 1064551 CDS YP_008614389.1 549480216 2732881..2734080 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2734080 1064551002614 IA1_13115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614389.1 2732881 D 1064551 CDS YP_008614390.1 549482134 2734201..2734806 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2734806 1064551002615 IA1_13120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614390.1 2734201 D 1064551 CDS YP_008614391.1 549480217 complement(2734841..2735566) 1 NC_022525.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein GrpE 2735566 1064551002616 IA1_13125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heat shock protein GrpE YP_008614391.1 2734841 R 1064551 CDS YP_008614392.1 549480218 2735555..2736433 1 NC_022525.1 catalyzes the phosphorylation of NAD to NADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; inorganic polyphosphate/ATP-NAD kinase 2736433 ppnK 1064551002617 ppnK Salmonella enterica subsp. enterica serovar Thompson str. RM6836 inorganic polyphosphate/ATP-NAD kinase YP_008614392.1 2735555 D 1064551 CDS YP_008614393.1 549480219 2736519..2738180 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase 2738180 1064551002618 IA1_13135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 recombinase YP_008614393.1 2736519 D 1064551 CDS YP_008614394.1 549480220 2738329..2738667 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane biogenesis protein BamE 2738667 1064551002619 IA1_13140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane biogenesis protein BamE YP_008614394.1 2738329 D 1064551 CDS YP_008614395.1 549480221 complement(2738833..2739123) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2739123 1064551002620 IA1_13145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614395.1 2738833 R 1064551 CDS YP_008614396.1 549482135 complement(2739113..2739412) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2739412 1064551002621 IA1_13150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614396.1 2739113 R 1064551 CDS YP_008614397.1 549480222 2739693..2740220 1 NC_022525.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; single-stranded DNA-binding protein 2740220 smpB 1064551002622 smpB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 single-stranded DNA-binding protein YP_008614397.1 2739693 D 1064551 CDS YP_008614398.1 549482136 2740835..2752309 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; large repetitive protein 2752309 1064551002623 IA1_13160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 large repetitive protein YP_008614398.1 2740835 D 1064551 CDS YP_008614399.1 549480223 2752374..2753783 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; TolC family type I secretion outer membrane protein 2753783 1064551002624 IA1_13165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 TolC family type I secretion outer membrane protein YP_008614399.1 2752374 D 1064551 CDS YP_008614400.1 549480224 2753780..2755960 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein 2755960 1064551002625 IA1_13170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-binding protein YP_008614400.1 2753780 D 1064551 CDS YP_008614401.1 549482137 2755941..2757131 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; HlyD family secretion protein 2757131 1064551002626 IA1_13175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 HlyD family secretion protein YP_008614401.1 2755941 D 1064551 CDS YP_008614402.1 549482138 2757761..2758957 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 2758957 1064551002627 IA1_13180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 integrase YP_008614402.1 2757761 D 1064551 CDS YP_008614403.1 549482139 2758970..2760127 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2760127 1064551002628 IA1_13185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614403.1 2758970 D 1064551 CDS YP_008614404.1 549482140 2760115..2761890 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2761890 1064551002629 IA1_13190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614404.1 2760115 D 1064551 CDS YP_008614405.1 549482141 complement(2762294..2762860) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phage polarity suppression protein 2762860 1064551002630 IA1_13195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phage polarity suppression protein YP_008614405.1 2762294 R 1064551 CDS YP_008614406.1 549480225 complement(2762877..2763188) 1 NC_022525.1 in E. coli K-12 this is in prophage P2 remnant; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2763188 1064551002631 IA1_13200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614406.1 2762877 R 1064551 CDS YP_008614407.1 549482142 2763710..2763973 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2763973 1064551002632 IA1_13205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614407.1 2763710 D 1064551 CDS YP_008614408.1 549482143 complement(2764213..2764938) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2764938 1064551002633 IA1_13210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614408.1 2764213 R 1064551 CDS YP_008614409.1 549482144 2765012..2765143 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2765143 1064551002634 IA1_13215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614409.1 2765012 D 1064551 CDS YP_008614410.1 549480226 complement(2765826..2766365) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; repressor 2766365 1064551002635 IA1_13220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 repressor YP_008614410.1 2765826 R 1064551 CDS YP_008614411.1 549480227 complement(2766433..2767953) 1 NC_022525.1 structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellin 2767953 1064551002636 IA1_13225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flagellin YP_008614411.1 2766433 R 1064551 CDS YP_008614412.1 549480228 complement(2768327..2768890) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-invertase 2768890 1064551002637 IA1_13230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-invertase YP_008614412.1 2768327 R 1064551 CDS YP_008614413.1 549482145 2769582..2770697 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2770697 1064551002638 IA1_13235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614413.1 2769582 D 1064551 CDS YP_008614414.1 549480229 2770778..2774434 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATPase 2774434 1064551002639 IA1_13240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug ABC transporter ATPase YP_008614414.1 2770778 D 1064551 CDS YP_008614415.1 549480230 2774544..2775788 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; enterochelin esterase 2775788 1064551002640 IA1_13245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 enterochelin esterase YP_008614415.1 2774544 D 1064551 CDS YP_008614416.1 549480231 2775820..2776755 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 2776755 1064551002641 IA1_13250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrolase YP_008614416.1 2775820 D 1064551 CDS YP_008614417.1 549480232 complement(2776797..2778971) 1 NC_022525.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane receptor FepA 2778971 1064551002642 IA1_13255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane receptor FepA YP_008614417.1 2776797 R 1064551 CDS YP_008614418.1 549480233 complement(2780010..2781122) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; effector protein PipB2 2781122 1064551002643 IA1_13260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 effector protein PipB2 YP_008614418.1 2780010 R 1064551 CDS YP_008614419.1 549480234 2781581..2782510 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; VirG localization protein VirK 2782510 1064551002644 IA1_13265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 VirG localization protein VirK YP_008614419.1 2781581 D 1064551 CDS YP_008614420.1 549480235 2782803..2783699 1 NC_022525.1 induced within macrophages; necessary for the resistance to antimicrobials; Derived by automated computational analysis using gene prediction method: Protein Homology.; antimicrobial resistance protein Mig-14 2783699 1064551002645 IA1_13270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 antimicrobial resistance protein Mig-14 YP_008614420.1 2782803 D 1064551 CDS YP_008614421.1 549482146 2784215..2784328 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2784328 1064551002646 IA1_13275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614421.1 2784215 D 1064551 CDS YP_008614422.1 549480236 complement(2784421..2785434) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel transporter 2785434 1064551002647 IA1_13280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nickel transporter YP_008614422.1 2784421 R 1064551 CDS YP_008614423.1 549480237 complement(2785567..2786982) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; signal transduction histidine kinase 2786982 1064551002648 IA1_13285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 signal transduction histidine kinase YP_008614423.1 2785567 R 1064551 CDS YP_008614424.1 549480238 complement(2786969..2787643) 1 NC_022525.1 transcriptional activator of tricarboxylate transport system genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2787643 1064551002649 IA1_13290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614424.1 2786969 R 1064551 CDS YP_008614425.1 549480239 2787798..2788775 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tricarboxylic transport membrane protein 2788775 1064551002650 IA1_13295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tricarboxylic transport membrane protein YP_008614425.1 2787798 D 1064551 CDS YP_008614426.1 549480240 2788790..2789221 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2789221 1064551002651 IA1_13300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614426.1 2788790 D 1064551 CDS YP_008614427.1 549480241 2789232..2790746 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter TctA 2790746 1064551002652 IA1_13305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tripartite tricarboxylate transporter TctA YP_008614427.1 2789232 D 1064551 CDS YP_008614428.1 549482147 complement(2790838..2790954) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2790954 1064551002653 IA1_13310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614428.1 2790838 R 1064551 CDS YP_008614429.1 549480242 2791050..2792027 1 NC_022525.1 in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon starvation induced protein 2792027 1064551002654 IA1_13315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbon starvation induced protein YP_008614429.1 2791050 D 1064551 CDS YP_008614430.1 549480243 2792053..2793321 1 NC_022525.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyglutarate oxidase 2793321 1064551002655 IA1_13320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydroxyglutarate oxidase YP_008614430.1 2792053 D 1064551 CDS YP_008614431.1 549480244 2793343..2794791 1 NC_022525.1 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate-semialdehyde dehdyrogenase 2794791 gabD 1064551002656 gabD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 succinate-semialdehyde dehdyrogenase YP_008614431.1 2793343 D 1064551 CDS YP_008614432.1 549480245 2794806..2796089 1 NC_022525.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-aminobutyrate aminotransferase 2796089 1064551002657 IA1_13330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-aminobutyrate aminotransferase YP_008614432.1 2794806 D 1064551 CDS YP_008614433.1 549480246 2796219..2797619 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-aminobutyrate transporter 2797619 1064551002658 IA1_13335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 gamma-aminobutyrate transporter YP_008614433.1 2796219 D 1064551 CDS YP_008614434.1 549480247 2797661..2798338 1 NC_022525.1 regulator of gab gene expression; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2798338 1064551002659 IA1_13340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614434.1 2797661 D 1064551 CDS YP_008614435.1 549480248 complement(2798360..2798809) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidoglycan-binding protein LysM 2798809 1064551002660 IA1_13345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidoglycan-binding protein LysM YP_008614435.1 2798360 R 1064551 CDS YP_008614436.1 549480249 complement(2798909..2799067) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2799067 1064551002661 IA1_13350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614436.1 2798909 R 1064551 CDS YP_008614437.1 549480250 2799250..2799549 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2799549 1064551002662 IA1_13355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614437.1 2799250 D 1064551 CDS YP_008614438.1 549480251 2799559..2800086 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2800086 1064551002663 IA1_13360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614438.1 2799559 D 1064551 CDS YP_008614439.1 549482148 2800165..2800344 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2800344 1064551002664 IA1_13365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614439.1 2800165 D 1064551 CDS YP_008614440.1 549480252 complement(2800434..2800835) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 2800835 1064551002665 IA1_13370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-binding protein YP_008614440.1 2800434 R 1064551 CDS YP_008614441.1 549482149 2801534..2801983 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2801983 1064551002666 IA1_13375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614441.1 2801534 D 1064551 CDS YP_008614442.1 549480253 complement(2802018..2802368) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2802368 1064551002667 IA1_13380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614442.1 2802018 R 1064551 CDS YP_008614443.1 549482150 2802530..2802856 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2802856 1064551002668 IA1_13385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614443.1 2802530 D 1064551 CDS YP_008614444.1 549480254 complement(2802940..2804274) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 2804274 1064551002669 IA1_13390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DeoR family transcriptional regulator YP_008614444.1 2802940 R 1064551 CDS YP_008614445.1 549480255 2804363..2804794 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alkylhydroperoxidase 2804794 1064551002670 IA1_13395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alkylhydroperoxidase YP_008614445.1 2804363 D 1064551 CDS YP_008614446.1 549482151 2805066..2805311 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glutaredoxin 2805311 1064551002671 IA1_13400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutaredoxin YP_008614446.1 2805066 D 1064551 CDS YP_008614447.1 549480256 2805308..2805718 1 NC_022525.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide reductase stimulatory protein 2805718 nrdI 1064551002672 nrdI Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonucleotide reductase stimulatory protein YP_008614447.1 2805308 D 1064551 CDS YP_008614448.1 549480257 2805691..2807835 1 NC_022525.1 Catalyzes the rate-limiting step in dNTP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit alpha 2807835 1064551002673 IA1_13410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonucleotide-diphosphate reductase subunit alpha YP_008614448.1 2805691 D 1064551 CDS YP_008614449.1 549480258 2807846..2808805 1 NC_022525.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit beta 2808805 1064551002674 IA1_13415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonucleotide-diphosphate reductase subunit beta YP_008614449.1 2807846 D 1064551 CDS YP_008614450.1 549480259 2809160..2810362 1 NC_022525.1 with ProWX is involved in the high-affinity uptake of glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter ATP-binding protein 2810362 1064551002675 IA1_13420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycine/betaine ABC transporter ATP-binding protein YP_008614450.1 2809160 D 1064551 CDS YP_008614451.1 549480260 2810355..2811419 1 NC_022525.1 with ProVX is involved in the high-affinity uptake of glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine betaine transporter membrane protein 2811419 1064551002676 IA1_13425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycine betaine transporter membrane protein YP_008614451.1 2810355 D 1064551 CDS YP_008614452.1 549480261 2811489..2812484 1 NC_022525.1 with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter substrate-binding protein 2812484 proX 1064551002677 proX Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycine/betaine ABC transporter substrate-binding protein YP_008614452.1 2811489 D 1064551 CDS YP_008614453.1 549480262 2812649..2813833 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 2813833 1064551002678 IA1_13435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008614453.1 2812649 D 1064551 CDS YP_008614454.1 549480263 2814330..2814860 1 NC_022525.1 DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2814860 1064551002679 IA1_13440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614454.1 2814330 D 1064551 CDS YP_008614455.1 549480264 2814987..2816159 1 NC_022525.1 with ErmA and TolC forms a multidrug efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2816159 1064551002680 IA1_13445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008614455.1 2814987 D 1064551 CDS YP_008614456.1 549480265 2816176..2817714 1 NC_022525.1 multidrug MFS transporte; with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein B 2817714 emrB 1064551002681 emrB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug resistance protein B YP_008614456.1 2816176 D 1064551 CDS YP_008614457.1 549480266 complement(2817763..2819133) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycoporin 2819133 1064551002682 IA1_13455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycoporin YP_008614457.1 2817763 R 1064551 CDS YP_008614458.1 549480267 complement(2819479..2819994) 1 NC_022525.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-ribosylhomocysteinase 2819994 1064551002683 IA1_13460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 S-ribosylhomocysteinase YP_008614458.1 2819479 R 1064551 CDS YP_008614459.1 549480268 complement(2820144..2821700) 1 NC_022525.1 involved in the first step of glutathione biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate--cysteine ligase 2821700 1064551002684 IA1_13465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamate--cysteine ligase YP_008614459.1 2820144 R 1064551 CDS YP_008614460.1 549480269 complement(2821777..2822202) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2822202 1064551002685 IA1_13470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614460.1 2821777 R 1064551 CDS YP_008614461.1 549480270 complement(2822199..2822765) 1 NC_022525.1 YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-1-P/6-phosphogluconate phosphatase 2822765 1064551002686 IA1_13475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fructose-1-P/6-phosphogluconate phosphatase YP_008614461.1 2822199 R 1064551 CDS YP_008614462.1 549482152 complement(2824159..2824344) 1 NC_022525.1 affects carbohydrate metabolism; has regulatory role in many processes; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; carbon storage regulator 2824344 1064551002692 IA1_13505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbon storage regulator YP_008614462.1 2824159 R 1064551 CDS YP_008614463.1 549480271 complement(2824579..2827209) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alanyl-tRNA synthetase 2827209 1064551002693 IA1_13510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alanyl-tRNA synthetase YP_008614463.1 2824579 R 1064551 CDS YP_008614464.1 549480272 complement(2827445..2827945) 1 NC_022525.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombination protein RecX 2827945 recX 1064551002694 recX Salmonella enterica subsp. enterica serovar Thompson str. RM6836 recombination protein RecX YP_008614464.1 2827445 R 1064551 CDS YP_008614465.1 549480273 complement(2828062..2829123) 1 NC_022525.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase RecA 2829123 recA 1064551002695 recA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 recombinase RecA YP_008614465.1 2828062 R 1064551 CDS YP_008614466.1 549480274 complement(2829208..2829708) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2829708 1064551002696 IA1_13525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614466.1 2829208 R 1064551 CDS YP_008614467.1 549480275 complement(2830184..2831263) 1 NC_022525.1 membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein hydrolase B 2831263 1064551002697 IA1_13530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 murein hydrolase B YP_008614467.1 2830184 R 1064551 CDS YP_008614468.1 549480276 2831517..2832080 1 NC_022525.1 catalyzes the phosphorylation of incoming sugar substrates along with their translocation across the cell membrane; the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sorbitol transporter subunit IIC 2832080 srlA 1064551002698 srlA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sorbitol transporter subunit IIC YP_008614468.1 2831517 D 1064551 CDS YP_008614469.1 549480277 2832077..2833048 1 NC_022525.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; subunit IIB transfers the phosphoryl group to the substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sorbitol transporter subunit IIB 2833048 srlE 1064551002699 srlE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sorbitol transporter subunit IIB YP_008614469.1 2832077 D 1064551 CDS YP_008614470.1 549480278 2833060..2833422 1 NC_022525.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sorbitol transporter subunit IIA 2833422 1064551002700 IA1_13545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sorbitol transporter subunit IIA YP_008614470.1 2833060 D 1064551 CDS YP_008614471.1 549480279 2833434..2834213 1 NC_022525.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sorbitol-6-phosphate dehydrogenase 2834213 1064551002701 IA1_13550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sorbitol-6-phosphate dehydrogenase YP_008614471.1 2833434 D 1064551 CDS YP_008614472.1 549480280 2834289..2834648 1 NC_022525.1 regulator for glucitol utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2834648 1064551002702 IA1_13555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614472.1 2834289 D 1064551 CDS YP_008614473.1 549480281 2834846..2835619 1 NC_022525.1 regulates genes involved in glucitol utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2835619 srlR 1064551002703 srlR Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614473.1 2834846 D 1064551 CDS YP_008614474.1 549480282 2835612..2836577 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose 5-phosphate isomerase 2836577 1064551002704 IA1_13565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arabinose 5-phosphate isomerase YP_008614474.1 2835612 D 1064551 CDS YP_008614475.1 549480283 complement(2836574..2838094) 1 NC_022525.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2838094 1064551002705 IA1_13570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614475.1 2836574 R 1064551 CDS YP_008614476.1 549482153 2838280..2839719 1 NC_022525.1 detoxifies nitric oxide using NADH; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; nitric oxide reductase 2839719 1064551002706 IA1_13575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitric oxide reductase YP_008614476.1 2838280 D 1064551 CDS YP_008614477.1 549480284 2839716..2840849 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:flavorubredoxin oxidoreductase 2840849 1064551002707 IA1_13580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH:flavorubredoxin oxidoreductase YP_008614477.1 2839716 D 1064551 CDS YP_008614478.1 549480285 complement(2840946..2843186) 1 NC_022525.1 carbamoyltransferase; involved in the formation of the cyanate group of hydrogenase; catalyzes the formation of carbamoyladenylate from carbamoylphosphate and then transfers the carbamoyl group to HypE; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamoyl phosphate phosphatase 2843186 1064551002708 IA1_13585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbamoyl phosphate phosphatase YP_008614478.1 2840946 R 1064551 CDS YP_008614479.1 549480286 complement(2843332..2843877) 1 NC_022525.1 involved in electron transport from formate to hydrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-H ferredoxin subunit 2843877 1064551002709 IA1_13590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate dehydrogenase-H ferredoxin subunit YP_008614479.1 2843332 R 1064551 CDS YP_008614480.1 549480287 complement(2844078..2844887) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2844887 1064551002710 IA1_13595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614480.1 2844078 R 1064551 CDS YP_008614481.1 549480288 complement(2844914..2845384) 1 NC_022525.1 involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3 maturation protease 2845384 hycI 1064551002711 hycI Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase 3 maturation protease YP_008614481.1 2844914 R 1064551 CDS YP_008614482.1 549480289 complement(2845377..2845787) 1 NC_022525.1 required for the maturation of the formate hydrogenlyase complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase maturation protein HycH 2845787 1064551002712 IA1_13605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate hydrogenlyase maturation protein HycH YP_008614482.1 2845377 R 1064551 CDS YP_008614483.1 549480290 complement(2845784..2846551) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase subunit 7 2846551 1064551002713 IA1_13610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate hydrogenlyase subunit 7 YP_008614483.1 2845784 R 1064551 CDS YP_008614484.1 549480291 complement(2846551..2847093) 1 NC_022525.1 electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase complex iron-sulfur subunit 2847093 1064551002714 IA1_13615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate hydrogenlyase complex iron-sulfur subunit YP_008614484.1 2846551 R 1064551 CDS YP_008614485.1 549480292 complement(2847103..2848812) 1 NC_022525.1 formate hydrogenlyase subunit 5; HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3 large subunit 2848812 hycE 1064551002715 hycE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase 3 large subunit YP_008614485.1 2847103 R 1064551 CDS YP_008614486.1 549480293 complement(2848830..2849753) 1 NC_022525.1 formate hydrogenlyase subunit 4; HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3 membrane subunit 2849753 hycD 1064551002716 hycD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase 3 membrane subunit YP_008614486.1 2848830 R 1064551 CDS YP_008614487.1 549482154 complement(2849756..2851582) 1 NC_022525.1 catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); Derived by automated computational analysis using gene prediction method: GeneMarkS+.; formate hydrogenlyase subunit 3 2851582 1064551002717 IA1_13630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate hydrogenlyase subunit 3 YP_008614487.1 2849756 R 1064551 CDS YP_008614488.1 549480294 complement(2851582..2852190) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase subunit 2 2852190 1064551002718 IA1_13635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate hydrogenlyase subunit 2 YP_008614488.1 2851582 R 1064551 CDS YP_008614489.1 549480295 complement(2852336..2852797) 1 NC_022525.1 regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase regulatory protein HycA 2852797 1064551002719 IA1_13640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate hydrogenlyase regulatory protein HycA YP_008614489.1 2852336 R 1064551 CDS YP_008614490.1 549480296 2853007..2853363 1 NC_022525.1 plays a role in hydrogenase nickel cofactor insertion; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase nickel incorporation protein 2853363 hypA 1064551002720 hypA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase nickel incorporation protein YP_008614490.1 2853007 D 1064551 CDS YP_008614491.1 549482155 2853432..2854304 1 NC_022525.1 GTP hydrolase involved in nickel liganding into hydrogenases; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hydrogenase nickel incorporation protein HypB 2854304 1064551002721 IA1_13650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase nickel incorporation protein HypB YP_008614491.1 2853432 D 1064551 CDS YP_008614492.1 549480297 2854295..2854567 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 accessory protein HypG 2854567 1064551002722 IA1_13655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase 2 accessory protein HypG YP_008614492.1 2854295 D 1064551 CDS YP_008614493.1 549482156 2854567..2855688 1 NC_022525.1 necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hydrogenase formation protein HypD 2855688 1064551002723 IA1_13660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase formation protein HypD YP_008614493.1 2854567 D 1064551 CDS YP_008614494.1 549482157 2855685..2856695 1 NC_022525.1 hydrogenase isoenzymes formation protein; involved in the formation of the cyanate group of the large subunit of the hydrogenase; catalyzes the formation of thiocyanate from thiocarbamate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; carbamoyl dehydratase 2856695 1064551002724 IA1_13665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbamoyl dehydratase YP_008614494.1 2855685 D 1064551 CDS YP_008614495.1 549480298 2856914..2858992 1 NC_022525.1 regulates the expression of formate dehydrogenase H and hydrogenase-3 structural genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2858992 1064551002725 IA1_13670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614495.1 2856914 D 1064551 CDS YP_008614496.1 549480299 complement(2859054..2859398) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2859398 1064551002726 IA1_13675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614496.1 2859054 R 1064551 CDS YP_008614497.1 549480300 2859580..2860497 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; iron ABC transporter substrate-binding protein 2860497 1064551002727 IA1_13680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron ABC transporter substrate-binding protein YP_008614497.1 2859580 D 1064551 CDS YP_008614498.1 549482158 2860494..2861315 1 NC_022525.1 with SitACD is involved in the transport of manganese and iron; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; manganese transporter 2861315 1064551002728 IA1_13685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 manganese transporter YP_008614498.1 2860494 D 1064551 CDS YP_008614499.1 549480301 2861312..2862172 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2862172 1064551002729 IA1_13690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614499.1 2861312 D 1064551 CDS YP_008614500.1 549482159 2862163..2863011 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2863011 1064551002730 IA1_13695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614500.1 2862163 D 1064551 CDS YP_008614501.1 549482160 complement(2863110..2863976) 1 NC_022525.1 involved in the survival of the bacteria in host cells; blocks cytokine production and induces apoptosis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; effector protein YopJ 2863976 yopJ 1064551002731 yopJ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 effector protein YopJ YP_008614501.1 2863110 R 1064551 CDS YP_008614502.1 549480302 complement(2864179..2864934) 1 NC_022525.1 activates Salmonella pathogenicity island 4 genes and weakly represses Salmonella pathogenicity island 1 genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2864934 1064551002732 IA1_13705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614502.1 2864179 R 1064551 CDS YP_008614503.1 549480303 complement(2865319..2866206) 1 NC_022525.1 regulates the expression of the invasion-associated type III secretion system in Salmonella pathogenicity island 1; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2866206 1064551002733 IA1_13710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614503.1 2865319 R 1064551 CDS YP_008614504.1 549480304 complement(2866551..2867003) 1 NC_022525.1 expressed during and after host cell invasion; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system effector protein OrgC 2867003 1064551002734 IA1_13715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system effector protein OrgC YP_008614504.1 2866551 R 1064551 CDS YP_008614505.1 549480305 complement(2867000..2867680) 1 NC_022525.1 oxygen regulated; required for internalization into the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; invasion protein OrgB 2867680 1064551002735 IA1_13720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 invasion protein OrgB YP_008614505.1 2867000 R 1064551 CDS YP_008614506.1 549482161 complement(2867637..2868215) 1 NC_022525.1 oxygen regulated; required for internalization into the host cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; invasion protein OrgA 2868215 1064551002736 IA1_13725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 invasion protein OrgA YP_008614506.1 2867637 R 1064551 CDS YP_008614507.1 549480306 complement(2868208..2868966) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2868966 1064551002737 IA1_13730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614507.1 2868208 R 1064551 CDS YP_008614508.1 549480307 complement(2868963..2869268) 1 NC_022525.1 may be involved in capping the needle substructure; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system needle complex protein PrgJ 2869268 1064551002738 IA1_13735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system needle complex protein PrgJ YP_008614508.1 2868963 R 1064551 CDS YP_008614509.1 549480308 complement(2869287..2869529) 1 NC_022525.1 with InvG, PrgH, and Prg K makes up the membrane spanning needle complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system needle complex protein PrgI 2869529 1064551002739 IA1_13740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system needle complex protein PrgI YP_008614509.1 2869287 R 1064551 CDS YP_008614510.1 549480309 complement(2869554..2870732) 1 NC_022525.1 with InvG, PrgI, and Prg K makes up the membrane spanning needle complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system needle complex protein PrgH 2870732 1064551002740 IA1_13745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system needle complex protein PrgH YP_008614510.1 2869554 R 1064551 CDS YP_008614511.1 549480310 2871048..2871977 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2871977 1064551002741 IA1_13750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614511.1 2871048 D 1064551 CDS YP_008614512.1 549480311 2873068..2874729 1 NC_022525.1 IagA; HilA; activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; Derived by automated computational analysis using gene prediction method: Protein Homology.; invasion protein regulator 2874729 1064551002742 IA1_13755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 invasion protein regulator YP_008614512.1 2873068 D 1064551 CDS YP_008614513.1 549480312 2874747..2875229 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; invasion protein IagB 2875229 1064551002743 IA1_13760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 invasion protein IagB YP_008614513.1 2874747 D 1064551 CDS YP_008614514.1 549480313 complement(2875283..2876914) 1 NC_022525.1 GTP-activating protein/tyrosine phosphatase; facilitates bacterial survival in host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 1 effector protein StpP 2876914 1064551002744 IA1_13765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island 1 effector protein StpP YP_008614514.1 2875283 R 1064551 CDS YP_008614515.1 549480314 complement(2876901..2877293) 1 NC_022525.1 type III secretion system chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone protein SicP 2877293 1064551002745 IA1_13770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chaperone protein SicP YP_008614515.1 2876901 R 1064551 CDS YP_008614516.1 549482162 complement(2877320..2877544) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2877544 1064551002746 IA1_13775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614516.1 2877320 R 1064551 CDS YP_008614517.1 549480315 complement(2877624..2877872) 1 NC_022525.1 invasion-associated ACP; carries the fatty acid chain in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl carrier protein 2877872 iacP 1064551002747 iacP Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyl carrier protein YP_008614517.1 2877624 R 1064551 CDS YP_008614518.1 549480316 complement(2877891..2879948) 1 NC_022525.1 cell invasion protein A; actin-binding; required for entry of the Salmonella into the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 1 effector protein SipA 2879948 1064551002748 IA1_13785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island 1 effector protein SipA YP_008614518.1 2877891 R 1064551 CDS YP_008614519.1 549480317 complement(2879967..2880998) 1 NC_022525.1 involved in the transport of effector protein by the type III secretion system of Salmonella pathogenicity island 1; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell invasion protein SipD 2880998 1064551002749 IA1_13790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell invasion protein SipD YP_008614519.1 2879967 R 1064551 CDS YP_008614520.1 549480318 complement(2881069..2882298) 1 NC_022525.1 cell invasion protein C; required for entry of the bacteria into the host cell; binds to actin; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 1 effector protein SipC 2882298 1064551002750 IA1_13795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island 1 effector protein SipC YP_008614520.1 2881069 R 1064551 CDS YP_008614521.1 549480319 complement(2882326..2884107) 1 NC_022525.1 cell invasion protein B; required for entry of the bacteria into the host cell; induces apoptosis in macrophages; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 1 effector protein SipB 2884107 1064551002751 IA1_13800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island 1 effector protein SipB YP_008614521.1 2882326 R 1064551 CDS YP_008614522.1 549480320 complement(2884110..2884607) 1 NC_022525.1 surface presentation of antigen protein SpaT; involved in the stabilization of SipB and SipC; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone protein SicA 2884607 1064551002752 IA1_13805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chaperone protein SicA YP_008614522.1 2884110 R 1064551 CDS YP_008614523.1 549480321 complement(2884745..2885815) 1 NC_022525.1 Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SpaS 2885815 1064551002753 IA1_13810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein SpaS YP_008614523.1 2884745 R 1064551 CDS YP_008614524.1 549480322 complement(2885802..2886593) 1 NC_022525.1 involved in the surface presentation of antigens needed for the invasion of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SpaR 2886593 1064551002754 IA1_13815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein SpaR YP_008614524.1 2885802 R 1064551 CDS YP_008614525.1 549480323 complement(2886597..2886857) 1 NC_022525.1 involved in the surface presentation of antigens needed for the invasion of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SpaQ 2886857 1064551002755 IA1_13820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein SpaQ YP_008614525.1 2886597 R 1064551 CDS YP_008614526.1 549480324 complement(2886883..2887557) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein 2887557 1064551002756 IA1_13825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein YP_008614526.1 2886883 R 1064551 CDS YP_008614527.1 549480325 complement(2887547..2888458) 1 NC_022525.1 involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SpaO 2888458 1064551002757 IA1_13830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein SpaO YP_008614527.1 2887547 R 1064551 CDS YP_008614528.1 549480326 complement(2888458..2889468) 1 NC_022525.1 involved in the surface presentation of antigens needed for the invasion of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; antigen presentation protein SpaN 2889468 spaN 1064551002758 spaN Salmonella enterica subsp. enterica serovar Thompson str. RM6836 antigen presentation protein SpaN YP_008614528.1 2888458 R 1064551 CDS YP_008614529.1 549480327 complement(2889468..2889911) 1 NC_022525.1 involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SpaM 2889911 spaM 1064551002759 spaM Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein SpaM YP_008614529.1 2889468 R 1064551 CDS YP_008614530.1 549480328 complement(2889889..2891184) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system ATPase 2891184 1064551002760 IA1_13845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system ATPase YP_008614530.1 2889889 R 1064551 CDS YP_008614531.1 549482163 complement(2891181..2891588) 1 NC_022525.1 involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system chaperone SpaK 2891588 spaK 1064551002761 spaK Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system chaperone SpaK YP_008614531.1 2891181 R 1064551 CDS YP_008614532.1 549480329 complement(2891612..2893669) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein InvA 2893669 1064551002762 IA1_13855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein InvA YP_008614532.1 2891612 R 1064551 CDS YP_008614533.1 549480330 complement(2893694..2894812) 1 NC_022525.1 involved in regulation of genes necessary for the entry of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein InvE 2894812 1064551002763 IA1_13860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system protein InvE YP_008614533.1 2893694 R 1064551 CDS YP_008614534.1 549480331 complement(2894809..2896497) 1 NC_022525.1 may be involved in the export or assemby of proteins involved in the entry of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system outer membrane pore InvG 2896497 1064551002764 IA1_13865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type III secretion system outer membrane pore InvG YP_008614534.1 2894809 R 1064551 CDS YP_008614535.1 549480332 complement(2896494..2897243) 1 NC_022525.1 involved in the expression of virulence genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2897243 1064551002765 IA1_13870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614535.1 2896494 R 1064551 CDS YP_008614536.1 549480333 2897600..2898043 1 NC_022525.1 involved in the secretion and localization proteins necessary for the entry of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; invasion protein 2898043 1064551002766 IA1_13875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 invasion protein YP_008614536.1 2897600 D 1064551 CDS YP_008614537.1 549482164 2898474..2898923 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2898923 1064551002767 IA1_13880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614537.1 2898474 D 1064551 CDS YP_008614538.1 549482165 2898923..2899255 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2899255 1064551002768 IA1_13885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614538.1 2898923 D 1064551 CDS YP_008614539.1 549482166 complement(2899528..2899854) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2899854 1064551002769 IA1_13890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614539.1 2899528 R 1064551 CDS YP_008614540.1 549480334 2900543..2900833 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter 2900833 1064551002771 IA1_13900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ABC transporter YP_008614540.1 2900543 D 1064551 CDS YP_008614541.1 549480335 2900830..2901357 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase 2901357 1064551002772 IA1_13905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetyltransferase YP_008614541.1 2900830 D 1064551 CDS YP_008614542.1 549482167 complement(2901430..2901570) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2901570 1064551002773 IA1_13910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614542.1 2901430 R 1064551 CDS YP_008614543.1 549480336 2902072..2902728 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine protein phosphatase 2902728 1064551002774 IA1_13915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 serine/threonine protein phosphatase YP_008614543.1 2902072 D 1064551 CDS YP_008614544.1 549482168 complement(2902973..2903467) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2903467 1064551002775 IA1_13920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614544.1 2902973 R 1064551 CDS YP_008614545.1 549482169 complement(2903494..2904162) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2904162 1064551002776 IA1_13925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614545.1 2903494 R 1064551 CDS YP_008614546.1 549482170 complement(2904737..2905147) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2905147 1064551002777 IA1_13930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614546.1 2904737 R 1064551 CDS YP_008614547.1 549480337 2905306..2907873 1 NC_022525.1 This protein performs the mismatch recognition step during the DNA repair process; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA mismatch repair protein MutS 2907873 1064551002778 IA1_13935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA mismatch repair protein MutS YP_008614547.1 2905306 D 1064551 CDS YP_008614548.1 549480338 complement(2907929..2908309) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2908309 1064551002779 IA1_13940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614548.1 2907929 R 1064551 CDS YP_008614549.1 549482171 complement(2908306..2909514) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2909514 1064551002780 IA1_13945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614549.1 2908306 R 1064551 CDS YP_008614550.1 549482172 2909623..2910534 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LysR family transcriptional regulator 2910534 1064551002781 IA1_13950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcriptional regulator YP_008614550.1 2909623 D 1064551 CDS YP_008614551.1 549480339 complement(2910576..2912072) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; gluconate permease 2912072 1064551002782 IA1_13955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 gluconate permease YP_008614551.1 2910576 R 1064551 CDS YP_008614552.1 549480340 complement(2912069..2913019) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2913019 1064551002783 IA1_13960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614552.1 2912069 R 1064551 CDS YP_008614553.1 549480341 complement(2913059..2913835) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2913835 1064551002784 IA1_13965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614553.1 2913059 R 1064551 CDS YP_008614554.1 549480342 complement(2913840..2914478) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aldolase 2914478 1064551002785 IA1_13970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aldolase YP_008614554.1 2913840 R 1064551 CDS YP_008614555.1 549480343 complement(2914475..2915737) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2915737 1064551002786 IA1_13975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614555.1 2914475 R 1064551 CDS YP_008614556.1 549480344 complement(2915731..2916654) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 2916654 1064551002787 IA1_13980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase YP_008614556.1 2915731 R 1064551 CDS YP_008614557.1 549480345 2916851..2917615 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 2917615 1064551002788 IA1_13985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DeoR family transcriptional regulator YP_008614557.1 2916851 D 1064551 CDS YP_008614558.1 549480346 complement(2917634..2918038) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2918038 1064551002789 IA1_13990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614558.1 2917634 R 1064551 CDS YP_008614559.1 549480347 2918209..2918802 1 NC_022525.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2918802 1064551002790 IA1_13995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_008614559.1 2918209 D 1064551 CDS YP_008614560.1 549482173 2918802..2920229 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phenolic acid decarboxylase subunit C 2920229 1064551002791 IA1_14000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phenolic acid decarboxylase subunit C YP_008614560.1 2918802 D 1064551 CDS YP_008614561.1 549480348 2920240..2920476 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxybenzoate decarboxylase 2920476 1064551002792 IA1_14005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-hydroxybenzoate decarboxylase YP_008614561.1 2920240 D 1064551 CDS YP_008614562.1 549480349 complement(2920521..2921513) 1 NC_022525.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor RpoS 2921513 1064551002793 IA1_14010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA polymerase sigma factor RpoS YP_008614562.1 2920521 R 1064551 CDS YP_008614563.1 549480350 complement(2921576..2922535) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2922535 1064551002794 IA1_14015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614563.1 2921576 R 1064551 CDS YP_008614564.1 549480351 complement(2922885..2923511) 1 NC_022525.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-L-isoaspartate O-methyltransferase 2923511 pcm 1064551002795 pcm Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protein-L-isoaspartate O-methyltransferase YP_008614564.1 2922885 R 1064551 CDS YP_008614565.1 549480352 complement(2923505..2924266) 1 NC_022525.1 broad specificity 5'(3')-nucleotidase and polyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.; stationary phase survival protein SurE 2924266 surE 1064551002796 surE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 stationary phase survival protein SurE YP_008614565.1 2923505 R 1064551 CDS YP_008614566.1 549480353 complement(2924247..2925296) 1 NC_022525.1 catalyzes the modification of U13 in tRNA(Glu); Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase D 2925296 truD 1064551002797 truD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA pseudouridine synthase D YP_008614566.1 2924247 R 1064551 CDS YP_008614567.1 549480354 complement(2925293..2925772) 1 NC_022525.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2925772 ispF 1064551002798 ispF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_008614567.1 2925293 R 1064551 CDS YP_008614568.1 549480355 complement(2925772..2926482) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2926482 1064551002799 IA1_14040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_008614568.1 2925772 R 1064551 CDS YP_008614569.1 549480356 complement(2926501..2926812) 1 NC_022525.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsB 2926812 ftsB 1064551002800 ftsB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsB YP_008614569.1 2926501 R 1064551 CDS YP_008614570.1 549482174 complement(2927003..2927281) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2927281 1064551002801 IA1_14050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614570.1 2927003 R 1064551 CDS YP_008614571.1 549480357 complement(2927377..2927982) 1 NC_022525.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylylsulfate kinase 2927982 1064551002802 IA1_14055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adenylylsulfate kinase YP_008614571.1 2927377 R 1064551 CDS YP_008614572.1 549480358 complement(2927969..2929408) 1 NC_022525.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate adenylyltransferase subunit 1 2929408 cysN 1064551002803 cysN Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfate adenylyltransferase subunit 1 YP_008614572.1 2927969 R 1064551 CDS YP_008614573.1 549480359 complement(2929418..2930326) 1 NC_022525.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate adenylyltransferase subunit 2 2930326 1064551002804 IA1_14065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfate adenylyltransferase subunit 2 YP_008614573.1 2929418 R 1064551 CDS YP_008614574.1 549480360 2930577..2931623 1 NC_022525.1 catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; Derived by automated computational analysis using gene prediction method: Protein Homology.; alkaline phosphatase isozyme conversion aminopeptidase 2931623 1064551002805 IA1_14070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alkaline phosphatase isozyme conversion aminopeptidase YP_008614574.1 2930577 D 1064551 CDS YP_008614575.1 549480361 complement(2933413..2933709) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ssRNA endonuclease 2933709 1064551002806 IA1_14075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ssRNA endonuclease YP_008614575.1 2933413 R 1064551 CDS YP_008614576.1 549480362 complement(2933706..2934626) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; CRISPR-associated protein Cas1 2934626 1064551002807 IA1_14080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 CRISPR-associated protein Cas1 YP_008614576.1 2933706 R 1064551 CDS YP_008614577.1 549482175 complement(2934623..2935273) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; CRISPR-associated protein Cas6 2935273 1064551002808 IA1_14085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 CRISPR-associated protein Cas6 YP_008614577.1 2934623 R 1064551 CDS YP_008614578.1 549482176 complement(2935255..2936001) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cytoplasmic protein 2936001 1064551002809 IA1_14090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytoplasmic protein YP_008614578.1 2935255 R 1064551 CDS YP_008614579.1 549480363 complement(2936012..2937070) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; CRISPR-associated protein Cse4 2937070 1064551002810 IA1_14095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 CRISPR-associated protein Cse4 YP_008614579.1 2936012 R 1064551 CDS YP_008614580.1 549480364 complement(2937084..2937644) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase 2937644 1064551002811 IA1_14100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transposase YP_008614580.1 2937084 R 1064551 CDS YP_008614581.1 549480365 complement(2937641..2939197) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; CRISPR-associated protein CasA 2939197 1064551002812 IA1_14105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 CRISPR-associated protein CasA YP_008614581.1 2937641 R 1064551 CDS YP_008614582.1 549480366 complement(2939209..2941872) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; helicase 2941872 1064551002813 IA1_14110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 helicase YP_008614582.1 2939209 R 1064551 CDS YP_008614583.1 549480367 2942188..2943270 1 NC_022525.1 involved in bacterial survival in the host cell; involved in macrophage replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 1 effector protein SopD 2943270 1064551002814 IA1_14115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pathogenicity island 1 effector protein SopD YP_008614583.1 2942188 D 1064551 CDS YP_008614584.1 549480368 complement(2943358..2944092) 1 NC_022525.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoadenosine phosphosulfate reductase 2944092 1064551002815 IA1_14120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoadenosine phosphosulfate reductase YP_008614584.1 2943358 R 1064551 CDS YP_008614585.1 549482177 complement(2944194..2945906) 1 NC_022525.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sulfite reductase subunit beta 2945906 1064551002816 IA1_14125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfite reductase subunit beta YP_008614585.1 2944194 R 1064551 CDS YP_008614586.1 549482178 complement(2945906..2947705) 1 NC_022525.1 catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sulfite reductase subunit alpha 2947705 cysJ 1064551002817 cysJ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfite reductase subunit alpha YP_008614586.1 2945906 R 1064551 CDS YP_008614587.1 549482179 2948140..2948502 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 6-carboxy-5,6,7,8-tetrahydropterin synthase 2948502 1064551002818 IA1_14135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 6-carboxy-5,6,7,8-tetrahydropterin synthase YP_008614587.1 2948140 D 1064551 CDS YP_008614588.1 549482180 complement(2948590..2949018) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2949018 1064551002819 IA1_14140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614588.1 2948590 R 1064551 CDS YP_008614589.1 549482181 complement(2949041..2949388) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; beta-lactamase 2949388 1064551002820 IA1_14145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 beta-lactamase YP_008614589.1 2949041 R 1064551 CDS YP_008614590.1 549480369 complement(2950970..2951641) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; coenzyme PQQ biosynthesis protein 2951641 1064551002821 IA1_14150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 coenzyme PQQ biosynthesis protein YP_008614590.1 2950970 R 1064551 CDS YP_008614591.1 549480370 complement(2951777..2953075) 1 NC_022525.1 catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; enolase 2953075 eno 1064551002822 eno Salmonella enterica subsp. enterica serovar Thompson str. RM6836 enolase YP_008614591.1 2951777 R 1064551 CDS YP_008614592.1 549480371 complement(2953158..2954795) 1 NC_022525.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; Derived by automated computational analysis using gene prediction method: Protein Homology.; CTP synthetase 2954795 pyrG 1064551002823 pyrG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 CTP synthetase YP_008614592.1 2953158 R 1064551 CDS YP_008614593.1 549480372 complement(2955023..2955823) 1 NC_022525.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate pyrophosphohydrolase 2955823 mazG 1064551002824 mazG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleoside triphosphate pyrophosphohydrolase YP_008614593.1 2955023 R 1064551 CDS YP_008614594.1 549480373 2956429..2957016 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 2957016 1064551002825 IA1_14170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein YP_008614594.1 2956429 D 1064551 CDS YP_008614595.1 549480374 2957150..2959795 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial usher protein 2959795 1064551002826 IA1_14175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial usher protein YP_008614595.1 2957150 D 1064551 CDS YP_008614596.1 549480375 2959808..2960581 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone protein StdC 2960581 1064551002827 IA1_14180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial chaperone protein StdC YP_008614596.1 2959808 D 1064551 CDS YP_008614597.1 549480376 2960601..2961107 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2961107 1064551002828 IA1_14185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614597.1 2960601 D 1064551 CDS YP_008614598.1 549480377 2961122..2961592 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein SteE 2961592 1064551002829 IA1_14190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein SteE YP_008614598.1 2961122 D 1064551 CDS YP_008614599.1 549480378 2961589..2962125 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 2962125 1064551002830 IA1_14195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein YP_008614599.1 2961589 D 1064551 CDS YP_008614600.1 549482182 2962180..2963211 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2963211 1064551002831 IA1_14200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614600.1 2962180 D 1064551 CDS YP_008614601.1 549482183 2963348..2963530 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2963530 1064551002832 IA1_14205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614601.1 2963348 D 1064551 CDS YP_008614602.1 549482184 2964785..2964922 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2964922 1064551002833 IA1_14210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614602.1 2964785 D 1064551 CDS YP_008614603.1 549482185 complement(2965228..2965524) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; plasmid stabilization protein ParE 2965524 1064551002834 IA1_14215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 plasmid stabilization protein ParE YP_008614603.1 2965228 R 1064551 CDS YP_008614604.1 549482186 complement(2965490..2965777) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2965777 1064551002835 IA1_14220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614604.1 2965490 R 1064551 CDS YP_008614605.1 549480379 complement(2965930..2968164) 1 NC_022525.1 (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP pyrophosphokinase 2968164 relA 1064551002836 relA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GTP pyrophosphokinase YP_008614605.1 2965930 R 1064551 CDS YP_008614606.1 549480380 complement(2968216..2969511) 1 NC_022525.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 2969511 rumA 1064551002837 rumA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 23S rRNA methyltransferase YP_008614606.1 2968216 R 1064551 CDS YP_008614607.1 549480381 2969569..2972325 1 NC_022525.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase 2972325 1064551002838 IA1_14235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensory histidine kinase YP_008614607.1 2969569 D 1064551 CDS YP_008614608.1 549480382 complement(2972369..2973511) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerate kinase 2973511 1064551002839 IA1_14240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerate kinase YP_008614608.1 2972369 R 1064551 CDS YP_008614609.1 549480383 complement(2973589..2974929) 1 NC_022525.1 catalyzes the formation of 5-keto-4-deoxy-D-glucarate from glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate dehydratase 2974929 gudD 1064551002840 gudD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucarate dehydratase YP_008614609.1 2973589 R 1064551 CDS YP_008614610.1 549480384 complement(2974950..2976290) 1 NC_022525.1 catalyzes the formation of 5-keto-4-deoxy-D-glucarate from glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate dehydratase 2976290 gudD 1064551002841 gudD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucarate dehydratase YP_008614610.1 2974950 R 1064551 CDS YP_008614611.1 549480385 complement(2976287..2977645) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate transporter 2977645 1064551002842 IA1_14255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucarate transporter YP_008614611.1 2976287 R 1064551 CDS YP_008614612.1 549480386 complement(2978125..2978574) 1 NC_022525.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavodoxin 2978574 1064551002843 IA1_14260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flavodoxin YP_008614612.1 2978125 R 1064551 CDS YP_008614613.1 549480387 complement(2978593..2979375) 1 NC_022525.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase C 2979375 1064551002844 IA1_14265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA pseudouridine synthase C YP_008614613.1 2978593 R 1064551 CDS YP_008614614.1 549480388 complement(2979375..2979761) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2979761 1064551002845 IA1_14270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614614.1 2979375 R 1064551 CDS YP_008614615.1 549480389 complement(2980316..2980861) 1 NC_022525.1 SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; Derived by automated computational analysis using gene prediction method: Protein Homology.; SecY interacting protein Syd 2980861 1064551002846 IA1_14275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 SecY interacting protein Syd YP_008614615.1 2980316 R 1064551 CDS YP_008614616.1 549480390 2980930..2981778 1 NC_022525.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 7-cyano-7-deazaguanine reductase 2981778 queF 1064551002847 queF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 7-cyano-7-deazaguanine reductase YP_008614616.1 2980930 D 1064551 CDS YP_008614617.1 549480391 2981891..2983255 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LOG family protein ygdH 2983255 1064551002848 IA1_14285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LOG family protein ygdH YP_008614617.1 2981891 D 1064551 CDS YP_008614618.1 549480392 2983820..2985109 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine transporter 2985109 1064551002849 IA1_14290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 serine/threonine transporter YP_008614618.1 2983820 D 1064551 CDS YP_008614619.1 549480393 2985168..2986535 1 NC_022525.1 catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-serine dehydratase 2986535 1064551002850 IA1_14295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-serine dehydratase YP_008614619.1 2985168 D 1064551 CDS YP_008614620.1 549482187 2986706..2987461 1 NC_022525.1 similar to flap endonuclease; FEN family; protein from E. coli does not have exonuclease activity; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; endonuclease 2987461 1064551002851 IA1_14300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endonuclease YP_008614620.1 2986706 D 1064551 CDS YP_008614621.1 549480394 complement(2987553..2988701) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; L-1,2-propanediol oxidoreductase 2988701 1064551002852 IA1_14305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-1,2-propanediol oxidoreductase YP_008614621.1 2987553 R 1064551 CDS YP_008614622.1 549480395 complement(2988718..2989365) 1 NC_022525.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fuculose phosphate aldolase 2989365 1064551002853 IA1_14310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fuculose phosphate aldolase YP_008614622.1 2988718 R 1064551 CDS YP_008614623.1 549482188 2989921..2991237 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; L-fucose transporter 2991237 1064551002854 IA1_14315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-fucose transporter YP_008614623.1 2989921 D 1064551 CDS YP_008614624.1 549480396 2991269..2993044 1 NC_022525.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; Derived by automated computational analysis using gene prediction method: Protein Homology.; fucose isomerase 2993044 fucI 1064551002855 fucI Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fucose isomerase YP_008614624.1 2991269 D 1064551 CDS YP_008614625.1 549480397 2993145..2994563 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; L-fuculokinase 2994563 1064551002856 IA1_14325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-fuculokinase YP_008614625.1 2993145 D 1064551 CDS YP_008614626.1 549480398 2994565..2994987 1 NC_022525.1 catalyzes the interconversion of alpha-L-fucose to beta-L-fucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-fucose mutarotase 2994987 fucU 1064551002857 fucU Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-fucose mutarotase YP_008614626.1 2994565 D 1064551 CDS YP_008614627.1 549480399 2995045..2995755 1 NC_022525.1 regulates expression of genes involved in L-fucose utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2995755 1064551002858 IA1_14335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614627.1 2995045 D 1064551 CDS YP_008614628.1 549480400 complement(2995814..2996914) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 2996914 1064551002859 IA1_14340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 23S rRNA methyltransferase YP_008614628.1 2995814 R 1064551 CDS YP_008614629.1 549480401 complement(2996907..2997302) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2997302 1064551002860 IA1_14345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614629.1 2996907 R 1064551 CDS YP_008614630.1 549480402 complement(2997321..2998238) 1 NC_022525.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2998238 1064551002861 IA1_14350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614630.1 2997321 R 1064551 CDS YP_008614631.1 549480403 complement(2998585..2998812) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2998812 1064551002862 IA1_14355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614631.1 2998585 R 1064551 CDS YP_008614632.1 549480404 2999005..3000210 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine sulfinate desulfinase 3000210 1064551002863 IA1_14360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cysteine sulfinate desulfinase YP_008614632.1 2999005 D 1064551 CDS YP_008614633.1 549480405 3000210..3000653 1 NC_022525.1 binds and activates CsdA; Fe-S protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; CsdA-binding activator 3000653 1064551002864 IA1_14365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 CsdA-binding activator YP_008614633.1 3000210 D 1064551 CDS YP_008614634.1 549480406 3000926..3001840 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 3001840 1064551002865 IA1_14370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 permease YP_008614634.1 3000926 D 1064551 CDS YP_008614635.1 549480407 complement(3001892..3002698) 1 NC_022525.1 accepts sulfur from CsdA; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur acceptor protein CsdL 3002698 1064551002866 IA1_14375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfur acceptor protein CsdL YP_008614635.1 3001892 R 1064551 CDS YP_008614636.1 549480408 complement(3002808..3003905) 1 NC_022525.1 membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein transglycosylase A 3003905 mltA 1064551002867 mltA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 murein transglycosylase A YP_008614636.1 3002808 R 1064551 CDS YP_008614637.1 549480409 complement(3004406..3005659) 1 NC_022525.1 hydrolyzes the bond between N-acetylmuramic acid and amino acid residues in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase 3005659 amiC 1064551002870 amiC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetylmuramoyl-L-alanine amidase YP_008614637.1 3004406 R 1064551 CDS YP_008614638.1 549480410 3005892..3007223 1 NC_022525.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylglutamate synthase 3007223 1064551002871 IA1_14400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetylglutamate synthase YP_008614638.1 3005892 D 1064551 CDS YP_008614639.1 549482189 complement(3007326..3009161) 1 NC_022525.1 helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; exonuclease V subunit alpha 3009161 recD 1064551002872 recD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exonuclease V subunit alpha YP_008614639.1 3007326 R 1064551 CDS YP_008614640.1 549482190 complement(3009158..3012703) 1 NC_022525.1 helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; exonuclease V subunit beta 3012703 recB 1064551002873 recB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exonuclease V subunit beta YP_008614640.1 3009158 R 1064551 CDS YP_008614641.1 549482191 complement(3012696..3015584) 1 NC_022525.1 degrades small peptides; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; protease 3015584 1064551002874 IA1_14415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protease YP_008614641.1 3012696 R 1064551 CDS YP_008614642.1 549480411 complement(3015762..3019133) 1 NC_022525.1 catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease V subunit gamma 3019133 recC 1064551002875 recC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exonuclease V subunit gamma YP_008614642.1 3015762 R 1064551 CDS YP_008614643.1 549482192 complement(3019149..3019469) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3019469 1064551002876 IA1_14425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614643.1 3019149 R 1064551 CDS YP_008614644.1 549482193 complement(3019454..3019861) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3019861 1064551002877 IA1_14430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614644.1 3019454 R 1064551 CDS YP_008614645.1 549482194 complement(3019858..3020382) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3020382 1064551002878 IA1_14435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614645.1 3019858 R 1064551 CDS YP_008614646.1 549480412 complement(3020412..3020882) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3020882 1064551002879 IA1_14440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614646.1 3020412 R 1064551 CDS YP_008614647.1 549482195 3020892..3021074 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3021074 1064551002880 IA1_14445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614647.1 3020892 D 1064551 CDS YP_008614648.1 549480413 complement(3021067..3021861) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidylate synthase 3021861 1064551002881 IA1_14450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thymidylate synthase YP_008614648.1 3021067 R 1064551 CDS YP_008614649.1 549480414 complement(3021868..3022743) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; prolipoprotein diacylglyceryl transferase 3022743 1064551002882 IA1_14455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 prolipoprotein diacylglyceryl transferase YP_008614649.1 3021868 R 1064551 CDS YP_008614650.1 549480415 complement(3022959..3025205) 1 NC_022525.1 member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate-protein phosphotransferase 3025205 1064551002883 IA1_14460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoenolpyruvate-protein phosphotransferase YP_008614650.1 3022959 R 1064551 CDS YP_008614651.1 549480416 complement(3025218..3025748) 1 NC_022525.1 hydrolyzes diadenosine polyphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA pyrophosphohydrolase 3025748 1064551002884 IA1_14465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA pyrophosphohydrolase YP_008614651.1 3025218 R 1064551 CDS YP_008614652.1 549480417 3026431..3027126 1 NC_022525.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA mismatch repair protein 3027126 1064551002885 IA1_14470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA mismatch repair protein YP_008614652.1 3026431 D 1064551 CDS YP_008614653.1 549480418 3027308..3028021 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3028021 1064551002886 IA1_14475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614653.1 3027308 D 1064551 CDS YP_008614654.1 549480419 3028191..3028409 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3028409 1064551002887 IA1_14480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614654.1 3028191 D 1064551 CDS YP_008614655.1 549480420 3028600..3029640 1 NC_022525.1 complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldo-keto reductase 3029640 tas 1064551002888 tas Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aldo-keto reductase YP_008614655.1 3028600 D 1064551 CDS YP_008614656.1 549480421 complement(3029727..3030929) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lysophospholipid transporter LplT 3030929 1064551002889 IA1_14490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lysophospholipid transporter LplT YP_008614656.1 3029727 R 1064551 CDS YP_008614657.1 549480422 complement(3030922..3033081) 1 NC_022525.1 Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-acyl-glycerophospho-ethanolamine acyltransferase 3033081 1064551002890 IA1_14495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-acyl-glycerophospho-ethanolamine acyltransferase YP_008614657.1 3030922 R 1064551 CDS YP_008614658.1 549480423 3033674..3034702 1 NC_022525.1 controls transcription of galETKM; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3034702 1064551002891 IA1_14500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614658.1 3033674 D 1064551 CDS YP_008614659.1 549482196 3034716..3035735 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LacI family transcriptional regulator 3035735 1064551002892 IA1_14505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LacI family transcriptional regulator YP_008614659.1 3034716 D 1064551 CDS YP_008614660.1 549480424 complement(3035745..3037007) 1 NC_022525.1 catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminopimelate decarboxylase 3037007 1064551002893 IA1_14510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diaminopimelate decarboxylase YP_008614660.1 3035745 R 1064551 CDS YP_008614661.1 549480425 3037125..3038060 1 NC_022525.1 activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3038060 1064551002894 IA1_14515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614661.1 3037125 D 1064551 CDS YP_008614662.1 549480426 complement(3038032..3038739) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; racemase 3038739 1064551002895 IA1_14520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 racemase YP_008614662.1 3038032 R 1064551 CDS YP_008614663.1 549480427 complement(3038852..3040270) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; D-galactose transporter 3040270 1064551002896 IA1_14525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-galactose transporter YP_008614663.1 3038852 R 1064551 CDS YP_008614664.1 549480428 complement(3040624..3041385) 1 NC_022525.1 catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-deoxy-D-gluconate 3-dehydrogenase 3041385 1064551002897 IA1_14530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-deoxy-D-gluconate 3-dehydrogenase YP_008614664.1 3040624 R 1064551 CDS YP_008614665.1 549482197 complement(3041442..3042278) 1 NC_022525.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 5-keto-4-deoxyuronate isomerase 3042278 1064551002898 IA1_14535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5-keto-4-deoxyuronate isomerase YP_008614665.1 3041442 R 1064551 CDS YP_008614666.1 549480429 complement(3042708..3043916) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA acetyltransferase 3043916 1064551002899 IA1_14540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetyl-CoA acetyltransferase YP_008614666.1 3042708 R 1064551 CDS YP_008614667.1 549480430 complement(3044009..3044872) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3044872 1064551002900 IA1_14545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614667.1 3044009 R 1064551 CDS YP_008614668.1 549482198 3044976..3045431 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Na(+)-translocating NADH-quinone reductase subunit E 3045431 1064551002901 IA1_14550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Na(+)-translocating NADH-quinone reductase subunit E YP_008614668.1 3044976 D 1064551 CDS YP_008614669.1 549480431 3045573..3046802 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3046802 1064551002902 IA1_14555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008614669.1 3045573 D 1064551 CDS YP_008614670.1 549480432 complement(3046833..3047105) 1 NC_022525.1 DNA-binding; binds the RcnA promotor; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3047105 1064551002903 IA1_14560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614670.1 3046833 R 1064551 CDS YP_008614671.1 549482199 3047227..3048087 1 NC_022525.1 membrane protein conferring nickel and cobalt resistance; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cobalt transporter 3048087 1064551002904 IA1_14565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt transporter YP_008614671.1 3047227 D 1064551 CDS YP_008614672.1 549480433 complement(3048292..3049050) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3049050 1064551002905 IA1_14570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614672.1 3048292 R 1064551 CDS YP_008614673.1 549480434 complement(3049037..3049543) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Positive regulator GrlA 3049543 1064551002906 IA1_14575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Positive regulator GrlA YP_008614673.1 3049037 R 1064551 CDS YP_008614674.1 549482200 complement(3049650..3050441) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; adhesion protein 3050441 1064551002907 IA1_14580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adhesion protein YP_008614674.1 3049650 R 1064551 CDS YP_008614675.1 549480435 complement(3050716..3051459) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone protein StdC 3051459 1064551002908 IA1_14585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial chaperone protein StdC YP_008614675.1 3050716 R 1064551 CDS YP_008614676.1 549480436 complement(3051500..3053989) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial usher protein 3053989 1064551002909 IA1_14590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial usher protein YP_008614676.1 3051500 R 1064551 CDS YP_008614677.1 549482201 complement(3054109..3054696) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein StdA 3054696 1064551002910 IA1_14595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein StdA YP_008614677.1 3054109 R 1064551 CDS YP_008614678.1 549480437 complement(3055415..3056047) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3056047 1064551002911 IA1_14600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614678.1 3055415 R 1064551 CDS YP_008614679.1 549482202 complement(3056094..3056630) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3056630 1064551002912 IA1_14605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614679.1 3056094 R 1064551 CDS YP_008614680.1 549480438 complement(3057436..3057834) 1 NC_022525.1 stability determinant protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; pirin 3057834 1064551002913 IA1_14610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pirin YP_008614680.1 3057436 R 1064551 CDS YP_008614681.1 549482203 complement(3057834..3058061) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3058061 1064551002914 IA1_14615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614681.1 3057834 R 1064551 CDS YP_008614682.1 549482204 3058261..3058521 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; endonuclease 3058521 1064551002915 IA1_14620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endonuclease YP_008614682.1 3058261 D 1064551 CDS YP_008614683.1 549482205 3058667..3058783 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3058783 1064551002916 IA1_14625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614683.1 3058667 D 1064551 CDS YP_008614684.1 549482206 3058802..3059602 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3059602 1064551002917 IA1_14630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614684.1 3058802 D 1064551 CDS YP_008614685.1 549480439 complement(3059887..3060645) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3060645 1064551002919 IA1_14640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614685.1 3059887 R 1064551 CDS YP_008614686.1 549480440 3060910..3061455 1 NC_022525.1 catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; isopentenyl-diphosphate delta-isomerase 3061455 1064551002920 IA1_14645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 isopentenyl-diphosphate delta-isomerase YP_008614686.1 3060910 D 1064551 CDS YP_008614687.1 549480441 complement(3061531..3063048) 1 NC_022525.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysyl-tRNA synthetase 3063048 lysS 1064551002921 lysS Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lysyl-tRNA synthetase YP_008614687.1 3061531 R 1064551 CDS YP_008614688.1 549480442 complement(3063058..3063939) 1 NC_022525.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 1 3063939 prfA 1064551002922 prfA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide chain release factor 1 YP_008614688.1 3063058 R 1064551 CDS YP_008614689.1 549480443 complement(3064261..3065994) 1 NC_022525.1 5'-3' single-stranded-DNA-specific exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.; ssDNA exonuclease RecJ 3065994 1064551002923 IA1_14660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ssDNA exonuclease RecJ YP_008614689.1 3064261 R 1064551 CDS YP_008614690.1 549480444 complement(3066000..3066713) 1 NC_022525.1 DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-disulfide isomerase 3066713 1064551002924 IA1_14665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protein-disulfide isomerase YP_008614690.1 3066000 R 1064551 CDS YP_008614691.1 549480445 complement(3066737..3067633) 1 NC_022525.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine recombinase XerD 3067633 xerD 1064551002925 xerD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tyrosine recombinase XerD YP_008614691.1 3066737 R 1064551 CDS YP_008614692.1 549480446 3067746..3068267 1 NC_022525.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavodoxin 3068267 1064551002926 IA1_14675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flavodoxin YP_008614692.1 3067746 D 1064551 CDS YP_008614693.1 549480447 complement(3068320..3068733) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3068733 1064551002927 IA1_14680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614693.1 3068320 R 1064551 CDS YP_008614694.1 549482207 complement(3068714..3068980) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3068980 1064551002928 IA1_14685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614694.1 3068714 R 1064551 CDS YP_008614695.1 549482208 3068979..3069215 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3069215 1064551002929 IA1_14690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614695.1 3068979 D 1064551 CDS YP_008614696.1 549480448 3069230..3070210 1 NC_022525.1 physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulato; Hda supressor; Derived by automated computational analysis using gene prediction method: Protein Homology.; global regulator 3070210 ygfZ 1064551002930 ygfZ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 global regulator YP_008614696.1 3069230 D 1064551 CDS YP_008614697.1 549480449 complement(3070326..3070985) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hemolysin 3070985 1064551002931 IA1_14700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hemolysin YP_008614697.1 3070326 R 1064551 CDS YP_008614698.1 549480450 complement(3071150..3071461) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3071461 1064551002932 IA1_14705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614698.1 3071150 R 1064551 CDS YP_008614699.1 549480451 3071620..3073053 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phospho-beta-glucosidase 3073053 1064551002933 IA1_14710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 6-phospho-beta-glucosidase YP_008614699.1 3071620 D 1064551 CDS YP_008614700.1 549482209 complement(3073101..3073994) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3073994 1064551002934 IA1_14715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614700.1 3073101 R 1064551 CDS YP_008614701.1 549480452 complement(3074450..3077323) 1 NC_022525.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine dehydrogenase 3077323 1064551002935 IA1_14720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycine dehydrogenase YP_008614701.1 3074450 R 1064551 CDS YP_008614702.1 549480453 complement(3077486..3077875) 1 NC_022525.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine cleavage system protein H 3077875 1064551002936 IA1_14725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycine cleavage system protein H YP_008614702.1 3077486 R 1064551 CDS YP_008614703.1 549480454 complement(3077901..3078995) 1 NC_022525.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine cleavage system aminomethyltransferase T 3078995 gcvT 1064551002937 gcvT Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycine cleavage system aminomethyltransferase T YP_008614703.1 3077901 R 1064551 CDS YP_008614704.1 549480455 complement(3079450..3080652) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-octaprenyl-6-methoxyphenyl hydroxylase 3080652 1064551002938 IA1_14735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-octaprenyl-6-methoxyphenyl hydroxylase YP_008614704.1 3079450 R 1064551 CDS YP_008614705.1 549480456 complement(3080777..3081955) 1 NC_022525.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-octaprenyl-6-methoxyphenyl hydroxylase 3081955 1064551002939 IA1_14740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-octaprenyl-6-methoxyphenyl hydroxylase YP_008614705.1 3080777 R 1064551 CDS YP_008614706.1 549480457 complement(3081952..3083268) 1 NC_022525.1 exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; Derived by automated computational analysis using gene prediction method: Protein Homology.; proline aminopeptidase P II 3083268 1064551002940 IA1_14745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 proline aminopeptidase P II YP_008614706.1 3081952 R 1064551 CDS YP_008614707.1 549480458 complement(3083294..3083872) 1 NC_022525.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3083872 1064551002941 IA1_14750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614707.1 3083294 R 1064551 CDS YP_008614708.1 549482210 3084039..3084368 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Z-ring-associated protein 3084368 1064551002942 IA1_14755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Z-ring-associated protein YP_008614708.1 3084039 D 1064551 CDS YP_008614709.1 549480459 3084662..3085210 1 NC_022525.1 ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-formyltetrahydrofolate cyclo-ligase 3085210 1064551002943 IA1_14760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5-formyltetrahydrofolate cyclo-ligase YP_008614709.1 3084662 D 1064551 CDS YP_008614710.1 549480460 complement(3085591..3086823) 1 NC_022525.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phosphoglycerate dehydrogenase 3086823 1064551002944 IA1_14765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-phosphoglycerate dehydrogenase YP_008614710.1 3085591 R 1064551 CDS YP_008614711.1 549480461 complement(3087090..3087749) 1 NC_022525.1 catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose 5-phosphate isomerase 3087749 1064551002945 IA1_14770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribose 5-phosphate isomerase YP_008614711.1 3087090 R 1064551 CDS YP_008614712.1 549480462 3087903..3088796 1 NC_022525.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; chromosome replication initiation inhibitor protein 3088796 1064551002946 IA1_14775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chromosome replication initiation inhibitor protein YP_008614712.1 3087903 D 1064551 CDS YP_008614713.1 549480463 complement(3089062..3089808) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidative stress defense protein 3089808 1064551002947 IA1_14780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidative stress defense protein YP_008614713.1 3089062 R 1064551 CDS YP_008614714.1 549480464 complement(3089902..3090537) 1 NC_022525.1 Involved in the export of arginine; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine exporter protein 3090537 1064551002948 IA1_14785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginine exporter protein YP_008614714.1 3089902 R 1064551 CDS YP_008614715.1 549480465 complement(3090738..3091598) 1 NC_022525.1 participates in the regulation of osmotic pressure changes within the cel; Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive channel MscS 3091598 1064551002949 IA1_14790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 mechanosensitive channel MscS YP_008614715.1 3090738 R 1064551 CDS YP_008614716.1 549480466 complement(3091831..3092910) 1 NC_022525.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase 3092910 1064551002950 IA1_14795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fructose-bisphosphate aldolase YP_008614716.1 3091831 R 1064551 CDS YP_008614717.1 549480467 complement(3093012..3094175) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerate kinase 3094175 1064551002951 IA1_14800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoglycerate kinase YP_008614717.1 3093012 R 1064551 CDS YP_008614718.1 549480468 complement(3094197..3095243) 1 NC_022525.1 required for glycolysis; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glyceraldehyde-3-phosphate dehydrogenase 3095243 gapA 1064551002952 gapA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glyceraldehyde-3-phosphate dehydrogenase YP_008614718.1 3094197 R 1064551 CDS YP_008614719.1 549480469 3095617..3096042 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 3096042 1064551002953 IA1_14810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-binding protein YP_008614719.1 3095617 D 1064551 CDS YP_008614720.1 549480470 3096068..3096646 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3096646 1064551002954 IA1_14815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614720.1 3096068 D 1064551 CDS YP_008614721.1 549482211 3096647..3097354 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cobalt ABC transporter permease 3097354 1064551002955 IA1_14820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt ABC transporter permease YP_008614721.1 3096647 D 1064551 CDS YP_008614722.1 549482212 3097432..3098019 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cobalt ABC transporter ATP-binding protein 3098019 1064551002956 IA1_14825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt ABC transporter ATP-binding protein YP_008614722.1 3097432 D 1064551 CDS YP_008614723.1 549482213 3098013..3098669 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cobalt ABC transporter ATP-binding protein 3098669 1064551002957 IA1_14830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cobalt ABC transporter ATP-binding protein YP_008614723.1 3098013 D 1064551 CDS YP_008614724.1 549480471 complement(3098713..3100704) 1 NC_022525.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transketolase 3100704 1064551002958 IA1_14835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transketolase YP_008614724.1 3098713 R 1064551 CDS YP_008614725.1 549480472 3100980..3101738 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; metalloprotease 3101738 1064551002959 IA1_14840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 metalloprotease YP_008614725.1 3100980 D 1064551 CDS YP_008614726.1 549480473 complement(3101838..3102758) 1 NC_022525.1 catalyzes the formation of putrescine from agmatine; Derived by automated computational analysis using gene prediction method: Protein Homology.; agmatinase 3102758 1064551002960 IA1_14845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 agmatinase YP_008614726.1 3101838 R 1064551 CDS YP_008614727.1 549480474 complement(3102963..3103916) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 3103916 1064551002961 IA1_14850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrolase YP_008614727.1 3102963 R 1064551 CDS YP_008614728.1 549480475 complement(3104112..3104465) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Toxin-antitoxin biofilm protein TabA 3104465 1064551002962 IA1_14855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Toxin-antitoxin biofilm protein TabA YP_008614728.1 3104112 R 1064551 CDS YP_008614729.1 549480476 complement(3104645..3105652) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ureidoglycolate dehydrogenase 3105652 1064551002963 IA1_14860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ureidoglycolate dehydrogenase YP_008614729.1 3104645 R 1064551 CDS YP_008614730.1 549480477 complement(3105666..3106682) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase 3106682 1064551002964 IA1_14865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alcohol dehydrogenase YP_008614730.1 3105666 R 1064551 CDS YP_008614731.1 549480478 complement(3106685..3108088) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; D-mannonate oxidoreductase 3108088 1064551002965 IA1_14870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-mannonate oxidoreductase YP_008614731.1 3106685 R 1064551 CDS YP_008614732.1 549482214 3108968..3109075 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; racemase 3109075 1064551002966 IA1_14875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 racemase YP_008614732.1 3108968 D 1064551 CDS YP_008614733.1 549480479 complement(3109390..3110139) 1 NC_022525.1 regulates the expression of uxuBA; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3110139 1064551002967 IA1_14880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614733.1 3109390 R 1064551 CDS YP_008614734.1 549480480 complement(3110344..3111075) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3111075 1064551002968 IA1_14885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614734.1 3110344 R 1064551 CDS YP_008614735.1 549482215 complement(3111219..3113117) 1 NC_022525.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arginine decarboxylase 3113117 1064551002969 IA1_14890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginine decarboxylase YP_008614735.1 3111219 R 1064551 CDS YP_008614736.1 549480481 complement(3113204..3113335) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3113335 1064551002970 IA1_14895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614736.1 3113204 R 1064551 CDS YP_008614737.1 549482216 3113669..3113836 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3113836 1064551002971 IA1_14900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614737.1 3113669 D 1064551 CDS YP_008614738.1 549480482 3113985..3115139 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine synthetase 3115139 1064551002972 IA1_14905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 S-adenosylmethionine synthetase YP_008614738.1 3113985 D 1064551 CDS YP_008614739.1 549480483 3115632..3117026 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; D-galactose transporter 3117026 1064551002973 IA1_14910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-galactose transporter YP_008614739.1 3115632 D 1064551 CDS YP_008614740.1 549480484 3117105..3117602 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3117602 1064551002974 IA1_14915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614740.1 3117105 D 1064551 CDS YP_008614741.1 549480485 3117698..3118405 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease 3118405 1064551002975 IA1_14920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endonuclease YP_008614741.1 3117698 D 1064551 CDS YP_008614742.1 549480486 3118434..3119213 1 NC_022525.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 3119213 1064551002976 IA1_14925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 16S rRNA methyltransferase YP_008614742.1 3118434 D 1064551 CDS YP_008614743.1 549480487 3119233..3120180 1 NC_022525.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione synthetase 3120180 1064551002977 IA1_14930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathione synthetase YP_008614743.1 3119233 D 1064551 CDS YP_008614744.1 549480488 3120396..3120959 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3120959 1064551002978 IA1_14935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614744.1 3120396 D 1064551 CDS YP_008614745.1 549480489 3120959..3121375 1 NC_022525.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction resolvase 3121375 1064551002979 IA1_14940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Holliday junction resolvase YP_008614745.1 3120959 D 1064551 CDS YP_008614746.1 549480490 complement(3121422..3122108) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; global regulatory protein 3122108 1064551002980 IA1_14945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 global regulatory protein YP_008614746.1 3121422 R 1064551 CDS YP_008614747.1 549480491 complement(3122241..3123221) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3123221 1064551002981 IA1_14950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614747.1 3122241 R 1064551 CDS YP_008614748.1 549480492 3123239..3123943 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3123943 1064551002982 IA1_14955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614748.1 3123239 D 1064551 CDS YP_008614749.1 549482217 3123962..3124528 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3124528 1064551002983 IA1_14960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614749.1 3123962 D 1064551 CDS YP_008614750.1 549480493 3124525..3124815 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3124815 1064551002984 IA1_14965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614750.1 3124525 D 1064551 CDS YP_008614751.1 549480494 3124823..3125416 1 NC_022525.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside-triphosphate diphosphatase 3125416 1064551002985 IA1_14970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleoside-triphosphate diphosphatase YP_008614751.1 3124823 D 1064551 CDS YP_008614752.1 549480495 3125409..3126545 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; HemN family oxidoreductase 3126545 1064551002986 IA1_14975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 HemN family oxidoreductase YP_008614752.1 3125409 D 1064551 CDS YP_008614753.1 549480496 complement(3126637..3127644) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3127644 1064551002987 IA1_14980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614753.1 3126637 R 1064551 CDS YP_008614754.1 549480497 complement(3127777..3128823) 1 NC_022525.1 catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-asparaginase 3128823 ansB 1064551002988 ansB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-asparaginase YP_008614754.1 3127777 R 1064551 CDS YP_008614755.1 549480498 complement(3129012..3129731) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3129731 1064551002989 IA1_14990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614755.1 3129012 R 1064551 CDS YP_008614756.1 549480499 complement(3129781..3130107) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3130107 1064551002990 IA1_14995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614756.1 3129781 R 1064551 CDS YP_008614757.1 549480500 complement(3130107..3130826) 1 NC_022525.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (guanine-N(7)-)-methyltransferase 3130826 trmB 1064551002991 trmB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA (guanine-N(7)-)-methyltransferase YP_008614757.1 3130107 R 1064551 CDS YP_008614758.1 549480501 3130981..3132033 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine DNA glycosylase 3132033 1064551002992 IA1_15005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adenine DNA glycosylase YP_008614758.1 3130981 D 1064551 CDS YP_008614759.1 549480502 3132061..3132336 1 NC_022525.1 protects iron-sulfur proteins against oxidative damage; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidative damage protection protein 3132336 1064551002993 IA1_15010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidative damage protection protein YP_008614759.1 3132061 D 1064551 CDS YP_008614760.1 549480503 3132449..3133534 1 NC_022525.1 Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein transglycosylase C 3133534 mltC 1064551002994 mltC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 murein transglycosylase C YP_008614760.1 3132449 D 1064551 CDS YP_008614761.1 549480504 3133751..3135007 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside permease 3135007 1064551002995 IA1_15020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleoside permease YP_008614761.1 3133751 D 1064551 CDS YP_008614762.1 549480505 complement(3135069..3137204) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine decarboxylase 3137204 1064551002996 IA1_15025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ornithine decarboxylase YP_008614762.1 3135069 R 1064551 CDS YP_008614763.1 549482218 3137478..3137591 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3137591 1064551002997 IA1_15030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614763.1 3137478 D 1064551 CDS YP_008614764.1 549480506 3137630..3138337 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3138337 1064551002998 IA1_15035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614764.1 3137630 D 1064551 CDS YP_008614765.1 549482219 complement(3138677..3139057) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; virulence protein 3139057 1064551003000 IA1_15045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 virulence protein YP_008614765.1 3138677 R 1064551 CDS YP_008614766.1 549480507 complement(3139122..3140447) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxybutyrate CoA-transferase 3140447 1064551003001 IA1_15050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-hydroxybutyrate CoA-transferase YP_008614766.1 3139122 R 1064551 CDS YP_008614767.1 549480508 complement(3140472..3140999) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum cofactor biosynthesis protein MoeC 3140999 1064551003002 IA1_15055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdenum cofactor biosynthesis protein MoeC YP_008614767.1 3140472 R 1064551 CDS YP_008614768.1 549480509 complement(3141023..3141865) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase 3141865 1064551003003 IA1_15060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 citrate lyase YP_008614768.1 3141023 R 1064551 CDS YP_008614769.1 549480510 3141957..3142835 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 3142835 1064551003004 IA1_15065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcriptional regulator YP_008614769.1 3141957 D 1064551 CDS YP_008614770.1 549480511 complement(3142883..3144622) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; arylsulfatase 3144622 1064551003005 IA1_15070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arylsulfatase YP_008614770.1 3142883 R 1064551 CDS YP_008614771.1 549480512 complement(3144691..3145875) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Chondro-6-sulfatase 3145875 1064551003006 IA1_15075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Chondro-6-sulfatase YP_008614771.1 3144691 R 1064551 CDS YP_008614772.1 549480513 3146387..3147070 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 3147070 1064551003007 IA1_15080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcriptional regulator YP_008614772.1 3146387 D 1064551 CDS YP_008614773.1 549480514 complement(3147174..3147731) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3147731 1064551003008 IA1_15085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614773.1 3147174 R 1064551 CDS YP_008614774.1 549480515 complement(3147709..3149208) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; APC family amino acid permease 3149208 1064551003009 IA1_15090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 APC family amino acid permease YP_008614774.1 3147709 R 1064551 CDS YP_008614775.1 549480516 complement(3149417..3149791) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3149791 1064551003010 IA1_15095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614775.1 3149417 R 1064551 CDS YP_008614776.1 549480517 complement(3149806..3151107) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD dependent oxidoreductase 3151107 1064551003011 IA1_15100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 FAD dependent oxidoreductase YP_008614776.1 3149806 R 1064551 CDS YP_008614777.1 549480518 3151269..3152753 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase 3152753 1064551003012 IA1_15105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aldehyde dehydrogenase YP_008614777.1 3151269 D 1064551 CDS YP_008614778.1 549482220 complement(3152889..3153272) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA replication/recombination/repair protein 3153272 1064551003013 IA1_15115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA replication/recombination/repair protein YP_008614778.1 3152889 R 1064551 CDS YP_008614779.1 549480519 complement(3153269..3153754) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3153754 1064551003014 IA1_15120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614779.1 3153269 R 1064551 CDS YP_008614780.1 549480520 complement(3154479..3155402) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; xylanase/chitin deacetylase 3155402 1064551003015 IA1_15125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 xylanase/chitin deacetylase YP_008614780.1 3154479 R 1064551 CDS YP_008614781.1 549482221 complement(3155441..3156319) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; amidohydrolase 3156319 1064551003016 IA1_15130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amidohydrolase YP_008614781.1 3155441 R 1064551 CDS YP_008614782.1 549480521 complement(3156715..3158019) 1 NC_022525.1 involved in the transport of aldohexuronates; Derived by automated computational analysis using gene prediction method: Protein Homology.; hexuronate transporter ExuT 3158019 1064551003017 IA1_15135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hexuronate transporter ExuT YP_008614782.1 3156715 R 1064551 CDS YP_008614783.1 549480522 3158424..3159608 1 NC_022525.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannonate dehydratase 3159608 1064551003018 IA1_15140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 mannonate dehydratase YP_008614783.1 3158424 D 1064551 CDS YP_008614784.1 549480523 3159719..3161191 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; D-mannonate oxidoreductase 3161191 1064551003019 IA1_15145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-mannonate oxidoreductase YP_008614784.1 3159719 D 1064551 CDS YP_008614785.1 549480524 3161203..3162615 1 NC_022525.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucuronate isomerase 3162615 1064551003020 IA1_15150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucuronate isomerase YP_008614785.1 3161203 D 1064551 CDS YP_008614786.1 549480525 complement(3162915..3163973) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein 3163973 1064551003021 IA1_15155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chemotaxis protein YP_008614786.1 3162915 R 1064551 CDS YP_008614787.1 549480526 complement(3164643..3166499) 1 NC_022525.1 catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase 3166499 1064551003022 IA1_15160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase YP_008614787.1 3164643 R 1064551 CDS YP_008614788.1 549480527 3166726..3167592 1 NC_022525.1 YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-transferase 3167592 1064551003023 IA1_15165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 S-transferase YP_008614788.1 3166726 D 1064551 CDS YP_008614789.1 549480528 complement(3167660..3168370) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum ABC transporter substrate-binding protein 3168370 1064551003024 IA1_15170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdenum ABC transporter substrate-binding protein YP_008614789.1 3167660 R 1064551 CDS YP_008614790.1 549480529 complement(3168370..3169422) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3169422 1064551003025 IA1_15175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614790.1 3168370 R 1064551 CDS YP_008614791.1 549480530 complement(3169498..3169746) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 accessory protein HypG 3169746 1064551003026 IA1_15180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase 2 accessory protein HypG YP_008614791.1 3169498 R 1064551 CDS YP_008614792.1 549480531 complement(3169774..3170115) 1 NC_022525.1 plays a role in hydrogenase nickel cofactor insertion; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase nickel incorporation protein 3170115 hypA 1064551003027 hypA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase nickel incorporation protein YP_008614792.1 3169774 R 1064551 CDS YP_008614793.1 549480532 complement(3170108..3170596) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3170596 1064551003028 IA1_15190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase YP_008614793.1 3170108 R 1064551 CDS YP_008614794.1 549480533 complement(3170589..3171083) 1 NC_022525.1 protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 maturation endopeptidase 3171083 hybD 1064551003029 hybD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase 2 maturation endopeptidase YP_008614794.1 3170589 R 1064551 CDS YP_008614795.1 549480534 complement(3171083..3172786) 1 NC_022525.1 involved in hydrogen uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 large subunit 3172786 1064551003030 IA1_15200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase 2 large subunit YP_008614795.1 3171083 R 1064551 CDS YP_008614796.1 549480535 complement(3172783..3173961) 1 NC_022525.1 HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 b cytochrome subunit 3173961 1064551003031 IA1_15205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase 2 b cytochrome subunit YP_008614796.1 3172783 R 1064551 CDS YP_008614797.1 549480536 complement(3173951..3174937) 1 NC_022525.1 Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3174937 1064551003032 IA1_15210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase YP_008614797.1 3173951 R 1064551 CDS YP_008614798.1 549480537 complement(3174940..3176058) 1 NC_022525.1 involved in hydrogen uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 small subunit 3176058 1064551003033 IA1_15215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrogenase 2 small subunit YP_008614798.1 3174940 R 1064551 CDS YP_008614799.1 549482222 complement(3176248..3176535) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3176535 1064551003034 IA1_15220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614799.1 3176248 R 1064551 CDS YP_008614800.1 549480538 complement(3176620..3178263) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein 3178263 1064551003035 IA1_15225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methyl-accepting chemotaxis protein YP_008614800.1 3176620 R 1064551 CDS YP_008614801.1 549480539 complement(3178570..3179064) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3179064 1064551003036 IA1_15230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614801.1 3178570 R 1064551 CDS YP_008614802.1 549482223 complement(3179343..3179846) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RNA helicase 3179846 1064551003037 IA1_15235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA helicase YP_008614802.1 3179343 R 1064551 CDS YP_008614803.1 549480540 3179950..3180360 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3180360 1064551003038 IA1_15240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614803.1 3179950 D 1064551 CDS YP_008614804.1 549480541 3180347..3180751 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3180751 1064551003039 IA1_15245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614804.1 3180347 D 1064551 CDS YP_008614805.1 549480542 3180875..3181759 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 3181759 1064551003040 IA1_15250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase YP_008614805.1 3180875 D 1064551 CDS YP_008614806.1 549480543 complement(3181873..3182298) 1 NC_022525.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; biopolymer transporter ExbD 3182298 1064551003041 IA1_15255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 biopolymer transporter ExbD YP_008614806.1 3181873 R 1064551 CDS YP_008614807.1 549480544 complement(3182305..3183039) 1 NC_022525.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; biopolymer transporter ExbB 3183039 1064551003042 IA1_15260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 biopolymer transporter ExbB YP_008614807.1 3182305 R 1064551 CDS YP_008614808.1 549482224 complement(3183032..3183169) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3183169 1064551003043 IA1_15265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614808.1 3183032 R 1064551 CDS YP_008614809.1 549480545 3183291..3184478 1 NC_022525.1 catalyzes the formation of L-homocysteine from cystathionine; Derived by automated computational analysis using gene prediction method: Protein Homology.; cystathionine beta-lyase 3184478 1064551003044 IA1_15270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cystathionine beta-lyase YP_008614809.1 3183291 D 1064551 CDS YP_008614810.1 549480546 3184618..3185277 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3185277 1064551003045 IA1_15275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614810.1 3184618 D 1064551 CDS YP_008614811.1 549480547 complement(3185341..3186258) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 3186258 1064551003046 IA1_15280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 AraC family transcriptional regulator YP_008614811.1 3185341 R 1064551 CDS YP_008614812.1 549480548 3186433..3187596 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde oxidoreductase 3187596 1064551003047 IA1_15285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aldehyde oxidoreductase YP_008614812.1 3186433 D 1064551 CDS YP_008614813.1 549480549 3187702..3188529 1 NC_022525.1 methylglyoxal reductase/beta-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,5-diketo-D-gluconic acid reductase 3188529 dkgA 1064551003048 dkgA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2,5-diketo-D-gluconic acid reductase YP_008614813.1 3187702 D 1064551 CDS YP_008614814.1 549480550 3190225..3190680 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; diadenosine tetraphosphatehydrolase 3190680 1064551003050 IA1_15300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diadenosine tetraphosphatehydrolase YP_008614814.1 3190225 D 1064551 CDS YP_008614815.1 549482225 complement(3190838..3191032) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3191032 1064551003051 IA1_15305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614815.1 3190838 R 1064551 CDS YP_008614816.1 549480551 complement(3191235..3193406) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3193406 1064551003052 IA1_15310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614816.1 3191235 R 1064551 CDS YP_008614817.1 549480552 3193894..3194877 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter substrate-binding protein 3194877 1064551003053 IA1_15315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 C4-dicarboxylate ABC transporter substrate-binding protein YP_008614817.1 3193894 D 1064551 CDS YP_008614818.1 549480553 3194919..3195401 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter permease 3195401 1064551003054 IA1_15320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 C4-dicarboxylate ABC transporter permease YP_008614818.1 3194919 D 1064551 CDS YP_008614819.1 549480554 3195412..3196719 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3196719 1064551003055 IA1_15325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614819.1 3195412 D 1064551 CDS YP_008614820.1 549480555 complement(3196765..3198177) 1 NC_022525.1 septal ring component that protects the divisome from stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsI 3198177 1064551003056 IA1_15330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsI YP_008614820.1 3196765 R 1064551 CDS YP_008614821.1 549480556 complement(3198251..3198988) 1 NC_022525.1 catalyzes the formation of 1,2-diacyl-sn-glycerol 3-phosphate from 1-acyl-sn-glycerol 3-phosphate using either acyl-CoA or acyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-acyl-sn-glycerol-3-phosphate acyltransferase 3198988 1064551003057 IA1_15335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_008614821.1 3198251 R 1064551 CDS YP_008614822.1 549480557 complement(3199245..3201503) 1 NC_022525.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase IV subunit A 3201503 1064551003058 IA1_15340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA topoisomerase IV subunit A YP_008614822.1 3199245 R 1064551 CDS YP_008614823.1 549480558 complement(3201614..3202480) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 3202480 1064551003059 IA1_15345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 AraC family transcriptional regulator YP_008614823.1 3201614 R 1064551 CDS YP_008614824.1 549482226 complement(3202552..3202944) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3202944 1064551003060 IA1_15350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614824.1 3202552 R 1064551 CDS YP_008614825.1 549480559 3203096..3203755 1 NC_022525.1 response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3203755 1064551003061 IA1_15355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614825.1 3203096 D 1064551 CDS YP_008614826.1 549480560 3203752..3205101 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein QseC 3205101 1064551003062 IA1_15360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensor protein QseC YP_008614826.1 3203752 D 1064551 CDS YP_008614827.1 549480561 3205208..3205789 1 NC_022525.1 involved in drug resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADPH quinone reductase MdaB 3205789 1064551003063 IA1_15365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADPH quinone reductase MdaB YP_008614827.1 3205208 D 1064551 CDS YP_008614828.1 549480562 3205821..3206135 1 NC_022525.1 catalyzes the oxidation of menadiol to menadione; Derived by automated computational analysis using gene prediction method: Protein Homology.; quinol monooxygenase 3206135 1064551003064 IA1_15370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 quinol monooxygenase YP_008614828.1 3205821 D 1064551 CDS YP_008614829.1 549480563 complement(3206260..3208152) 1 NC_022525.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase IV subunit B 3208152 1064551003065 IA1_15375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA topoisomerase IV subunit B YP_008614829.1 3206260 R 1064551 CDS YP_008614830.1 549480564 complement(3208180..3208761) 1 NC_022525.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; esterase 3208761 1064551003066 IA1_15380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 esterase YP_008614830.1 3208180 R 1064551 CDS YP_008614831.1 549480565 complement(3208761..3209588) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 3',5'-cyclic-nucleotide phosphodiesterase 3209588 1064551003067 IA1_15385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3',5'-cyclic-nucleotide phosphodiesterase YP_008614831.1 3208761 R 1064551 CDS YP_008614832.1 549480566 complement(3209613..3210035) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dehydrogenase 3210035 1064551003068 IA1_15390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dehydrogenase YP_008614832.1 3209613 R 1064551 CDS YP_008614833.1 549480567 complement(3210032..3210664) 1 NC_022525.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-ribose pyrophosphatase 3210664 nudF 1064551003069 nudF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ADP-ribose pyrophosphatase YP_008614833.1 3210032 R 1064551 CDS YP_008614834.1 549480568 3210871..3212343 1 NC_022525.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane channel protein 3212343 tolC 1064551003070 tolC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane channel protein YP_008614834.1 3210871 D 1064551 CDS YP_008614835.1 549480569 3212553..3213224 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3213224 1064551003071 IA1_15405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614835.1 3212553 D 1064551 CDS YP_008614836.1 549480570 3213230..3214393 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3214393 1064551003072 IA1_15410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614836.1 3213230 D 1064551 CDS YP_008614837.1 549480571 complement(3214454..3215284) 1 NC_022525.1 seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; Derived by automated computational analysis using gene prediction method: Protein Homology.; LigB family dioxygenase 3215284 1064551003073 IA1_15415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LigB family dioxygenase YP_008614837.1 3214454 R 1064551 CDS YP_008614838.1 549480572 3215383..3216156 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter ZupT 3216156 1064551003074 IA1_15420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 zinc transporter ZupT YP_008614838.1 3215383 D 1064551 CDS YP_008614839.1 549482227 complement(3216223..3216399) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3216399 1064551003075 IA1_15425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614839.1 3216223 R 1064551 CDS YP_008614840.1 549480573 3216799..3218595 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; arylsulfate sulfotransferase 3218595 1064551003076 IA1_15430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arylsulfate sulfotransferase YP_008614840.1 3216799 D 1064551 CDS YP_008614841.1 549480574 3218615..3219286 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol:disulfide interchange protein 3219286 1064551003077 IA1_15435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiol:disulfide interchange protein YP_008614841.1 3218615 D 1064551 CDS YP_008614842.1 549480575 3219301..3219978 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; disulfide oxidoreductase 3219978 1064551003078 IA1_15440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 disulfide oxidoreductase YP_008614842.1 3219301 D 1064551 CDS YP_008614843.1 549480576 complement(3220182..3220835) 1 NC_022525.1 DHBP synthase; functions during riboflavin biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3220835 ribB 1064551003079 ribB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_008614843.1 3220182 R 1064551 CDS YP_008614844.1 549482228 3221272..3221568 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3221568 1064551003080 IA1_15450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614844.1 3221272 D 1064551 CDS YP_008614845.1 549480577 complement(3221643..3221852) 1 NC_022525.1 Involved in glycogen synthesis. May be involved in glycogen priming; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen synthesis protein GlgS 3221852 1064551003081 IA1_15455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycogen synthesis protein GlgS YP_008614845.1 3221643 R 1064551 CDS YP_008614846.1 549480578 3222110..3222730 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3222730 1064551003082 IA1_15460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614846.1 3222110 D 1064551 CDS YP_008614847.1 549482229 3222749..3224428 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3224428 1064551003083 IA1_15465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614847.1 3222749 D 1064551 CDS YP_008614848.1 549480579 complement(3224887..3226320) 1 NC_022525.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3226320 1064551003084 IA1_15470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_008614848.1 3224887 R 1064551 CDS YP_008614849.1 549480580 complement(3226368..3229211) 1 NC_022525.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3229211 1064551003085 IA1_15475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_008614849.1 3226368 R 1064551 CDS YP_008614850.1 549480581 complement(3229329..3230630) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3230630 1064551003086 IA1_15480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614850.1 3229329 R 1064551 CDS YP_008614851.1 549480582 3230872..3231486 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3231486 1064551003087 IA1_15485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614851.1 3230872 D 1064551 CDS YP_008614852.1 549480583 3231549..3232790 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA nucleotidyl transferase 3232790 1064551003088 IA1_15490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA nucleotidyl transferase YP_008614852.1 3231549 D 1064551 CDS YP_008614853.1 549480584 complement(3232895..3233716) 1 NC_022525.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP pyrophosphate phosphatase 3233716 1064551003089 IA1_15495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP pyrophosphate phosphatase YP_008614853.1 3232895 R 1064551 CDS YP_008614854.1 549480585 complement(3233814..3234173) 1 NC_022525.1 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroneopterin triphosphate 2'-epimerase 3234173 folB 1064551003090 folB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydroneopterin triphosphate 2'-epimerase YP_008614854.1 3233814 R 1064551 CDS YP_008614855.1 549480586 3234280..3234891 1 NC_022525.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate acyltransferase 3234891 1064551003091 IA1_15505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerol-3-phosphate acyltransferase YP_008614855.1 3234280 D 1064551 CDS YP_008614856.1 549482230 complement(3234938..3235117) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3235117 1064551003092 IA1_15510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614856.1 3234938 R 1064551 CDS YP_008614857.1 549480587 complement(3235141..3236154) 1 NC_022525.1 universal genome maintenance protein; Kae1/Qri7/OSGEP/YgjD family protein; in Archaea, some Kae1 are found as fusion proteins similar to two distinct proteins in yeast that are involved in the KEOPS complex; kinase associated endopeptidase 1 (Kae1) and a serine/threonine protein kinase (Bud32); in Pyrococcus Kae1 has atypical AP endonuclease activity and inhibits the kinase activity of Bud32; the protein is essential in Escherichia coli and Bacillus subtilis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UGMP family protein 3236154 1064551003093 IA1_15515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UGMP family protein YP_008614857.1 3235141 R 1064551 CDS YP_008614858.1 549480588 3236382..3236597 1 NC_022525.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S21 3236597 rpsU 1064551003094 rpsU Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S21 YP_008614858.1 3236382 D 1064551 CDS YP_008614859.1 549480589 3236833..3238578 1 NC_022525.1 synthesizes RNA primers at the replication forks; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA primase 3238578 dnaG 1064551003095 dnaG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA primase YP_008614859.1 3236833 D 1064551 CDS YP_008614860.1 549480590 3238593..3240575 1 NC_022525.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor RpoD 3240575 1064551003096 IA1_15530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA polymerase sigma factor RpoD YP_008614860.1 3238593 D 1064551 CDS YP_008614861.1 549480591 complement(3240699..3241205) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA glycosylase 3241205 1064551003097 IA1_15535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA glycosylase YP_008614861.1 3240699 R 1064551 CDS YP_008614862.1 549480592 complement(3241486..3242253) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; siderophore-interacting protein 3242253 1064551003099 IA1_15545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 siderophore-interacting protein YP_008614862.1 3241486 R 1064551 CDS YP_008614863.1 549482231 3242488..3243132 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 3243132 1064551003100 IA1_15550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614863.1 3242488 D 1064551 CDS YP_008614864.1 549480593 complement(3243129..3244694) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein 3244694 1064551003101 IA1_15555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chemotaxis protein YP_008614864.1 3243129 R 1064551 CDS YP_008614865.1 549480594 complement(3245082..3246602) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aerotaxis receptor 3246602 1064551003102 IA1_15560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aerotaxis receptor YP_008614865.1 3245082 R 1064551 CDS YP_008614866.1 549480595 3247005..3248411 1 NC_022525.1 catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine--2-oxoglutarate aminotransferase 3248411 1064551003103 IA1_15565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 putrescine--2-oxoglutarate aminotransferase YP_008614866.1 3247005 D 1064551 CDS YP_008614867.1 549480596 3248582..3250600 1 NC_022525.1 catalyzes the formation of trans-2- enoyl-CoA from 2,4-dienoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,4-dienoyl-CoA reductase 3250600 fadH 1064551003104 fadH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2,4-dienoyl-CoA reductase YP_008614867.1 3248582 D 1064551 CDS YP_008614868.1 549480597 complement(3250681..3251817) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 3251817 1064551003105 IA1_15575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 23S rRNA methyltransferase YP_008614868.1 3250681 R 1064551 CDS YP_008614869.1 549480598 3251903..3252400 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3252400 1064551003106 IA1_15580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614869.1 3251903 D 1064551 CDS YP_008614870.1 549480599 3252552..3253244 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3253244 1064551003107 IA1_15585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614870.1 3252552 D 1064551 CDS YP_008614871.1 549480600 3253333..3254331 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 3254331 1064551003108 IA1_15590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase YP_008614871.1 3253333 D 1064551 CDS YP_008614872.1 549480601 3254602..3255570 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3255570 1064551003109 IA1_15595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614872.1 3254602 D 1064551 CDS YP_008614873.1 549480602 3255825..3257069 1 NC_022525.1 involved in the import of serine and threonine coupled with the import of sodium; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine transporter 3257069 1064551003110 IA1_15600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 serine/threonine transporter YP_008614873.1 3255825 D 1064551 CDS YP_008614874.1 549480603 3257519..3258181 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3258181 1064551003111 IA1_15605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614874.1 3257519 D 1064551 CDS YP_008614875.1 549480604 3258185..3258568 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3258568 1064551003112 IA1_15610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614875.1 3258185 D 1064551 CDS YP_008614876.1 549480605 3258713..3259081 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3259081 1064551003113 IA1_15615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614876.1 3258713 D 1064551 CDS YP_008614877.1 549482232 3259123..3259428 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3259428 1064551003114 IA1_15620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614877.1 3259123 D 1064551 CDS YP_008614878.1 549480606 3259431..3259829 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3259829 1064551003115 IA1_15625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614878.1 3259431 D 1064551 CDS YP_008614879.1 549480607 3259826..3260125 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3260125 1064551003116 IA1_15630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614879.1 3259826 D 1064551 CDS YP_008614880.1 549480608 3260270..3260755 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DoxX protein 3260755 1064551003117 IA1_15635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DoxX protein YP_008614880.1 3260270 D 1064551 CDS YP_008614881.1 549480609 3260823..3261809 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3261809 1064551003118 IA1_15640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614881.1 3260823 D 1064551 CDS YP_008614882.1 549480610 3261933..3262298 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3262298 1064551003119 IA1_15645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614882.1 3261933 D 1064551 CDS YP_008614883.1 549480611 complement(3262337..3263233) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 3263233 1064551003120 IA1_15650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcripitonal regulator YP_008614883.1 3262337 R 1064551 CDS YP_008614884.1 549480612 3263338..3264039 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; pirin 3264039 1064551003121 IA1_15655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pirin YP_008614884.1 3263338 D 1064551 CDS YP_008614885.1 549482233 3264063..3264227 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3264227 1064551003122 IA1_15660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614885.1 3264063 D 1064551 CDS YP_008614886.1 549480613 complement(3264340..3265650) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3265650 1064551003123 IA1_15665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614886.1 3264340 R 1064551 CDS YP_008614887.1 549480614 complement(3265676..3267007) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3267007 1064551003124 IA1_15670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614887.1 3265676 R 1064551 CDS YP_008614888.1 549480615 complement(3267324..3268688) 1 NC_022525.1 catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-serine dehydratase 3268688 1064551003125 IA1_15675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-serine dehydratase YP_008614888.1 3267324 R 1064551 CDS YP_008614889.1 549480616 complement(3268758..3271052) 1 NC_022525.1 formate acetyltransferase; catalyzes the formation of formate and acetyl-CoA from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; keto-acid formate acetyltransferase 3271052 1064551003126 IA1_15680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 keto-acid formate acetyltransferase YP_008614889.1 3268758 R 1064551 CDS YP_008614890.1 549480617 complement(3271086..3272294) 1 NC_022525.1 catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; propionate/acetate kinase 3272294 1064551003127 IA1_15685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 propionate/acetate kinase YP_008614890.1 3271086 R 1064551 CDS YP_008614891.1 549480618 complement(3272361..3273692) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine transporter 3273692 1064551003128 IA1_15690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 serine/threonine transporter YP_008614891.1 3272361 R 1064551 CDS YP_008614892.1 549480619 complement(3273713..3274702) 1 NC_022525.1 catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine dehydratase 3274702 1064551003129 IA1_15695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 threonine dehydratase YP_008614892.1 3273713 R 1064551 CDS YP_008614893.1 549480620 complement(3274800..3275738) 1 NC_022525.1 regulates the tdcABCDEFG operon which is involved in amino acid degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3275738 1064551003130 IA1_15700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614893.1 3274800 R 1064551 CDS YP_008614894.1 549482234 3276367..3276690 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3276690 1064551003131 IA1_15705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614894.1 3276367 D 1064551 CDS YP_008614895.1 549480621 complement(3277092..3278237) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerate kinase 3278237 1064551003132 IA1_15710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerate kinase YP_008614895.1 3277092 R 1064551 CDS YP_008614896.1 549480622 complement(3278335..3279225) 1 NC_022525.1 catalyzes the reduction of tartronate semialdehyde to glycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; tartronate semialdehyde reductase 3279225 garR 1064551003133 garR Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tartronate semialdehyde reductase YP_008614896.1 3278335 R 1064551 CDS YP_008614897.1 549480623 complement(3279251..3280021) 1 NC_022525.1 cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-dehydro-beta-deoxy-D-glucarate aldolase 3280021 1064551003134 IA1_15720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alpha-dehydro-beta-deoxy-D-glucarate aldolase YP_008614897.1 3279251 R 1064551 CDS YP_008614898.1 549480624 3280551..3282122 1 NC_022525.1 catalyzes the formation of 5-dehydro-4-deoxy-D-glucarate from D-galactarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactarate dehydrogenase 3282122 garD 1064551003135 garD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 galactarate dehydrogenase YP_008614898.1 3280551 D 1064551 CDS YP_008614899.1 549480625 complement(3282362..3283309) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar kinase 3283309 1064551003136 IA1_15730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar kinase YP_008614899.1 3282362 R 1064551 CDS YP_008614900.1 549480626 complement(3283320..3284153) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 3284153 1064551003137 IA1_15735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DeoR family transcriptional regulator YP_008614900.1 3283320 R 1064551 CDS YP_008614901.1 549480627 3284487..3285341 1 NC_022525.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase 3285341 gatY 1064551003138 gatY Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fructose-bisphosphate aldolase YP_008614901.1 3284487 D 1064551 CDS YP_008614902.1 549480628 3285313..3286266 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphofructokinase 3286266 1064551003139 IA1_15745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 6-phosphofructokinase YP_008614902.1 3285313 D 1064551 CDS YP_008614903.1 549480629 3286293..3287720 1 NC_022525.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIBC 3287720 1064551003140 IA1_15750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS fructose transporter subunit IIBC YP_008614903.1 3286293 D 1064551 CDS YP_008614904.1 549482235 3287707..3288513 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS fructose transporter subunit IIA 3288513 1064551003141 IA1_15755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS fructose transporter subunit IIA YP_008614904.1 3287707 D 1064551 CDS YP_008614905.1 549482236 3288711..3289982 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tagatose-bisphosphate aldolase 3289982 1064551003142 IA1_15760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tagatose-bisphosphate aldolase YP_008614905.1 3288711 D 1064551 CDS YP_008614906.1 549482237 3289997..3290461 1 NC_022525.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS galactitol transporter subunit IIA 3290461 1064551003143 IA1_15765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS galactitol transporter subunit IIA YP_008614906.1 3289997 D 1064551 CDS YP_008614907.1 549480630 3290492..3290776 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIB 3290776 1064551003144 IA1_15770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sugar transporter subunit IIB YP_008614907.1 3290492 D 1064551 CDS YP_008614908.1 549480631 3290780..3292153 1 NC_022525.1 with GatAB forms a phosphoenolpyruvate-dependent sugar phosphotransferase transporter for galactitol; subunit IIC forms the translocation channel and contains the substrate binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS galactitol transporter subunit IIC 3292153 gatC 1064551003145 gatC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS galactitol transporter subunit IIC YP_008614908.1 3290780 D 1064551 CDS YP_008614909.1 549480632 3292197..3293240 1 NC_022525.1 Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactitol-1-phosphate 5-dehydrogenase 3293240 1064551003146 IA1_15780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 galactitol-1-phosphate 5-dehydrogenase YP_008614909.1 3292197 D 1064551 CDS YP_008614910.1 549480633 3293351..3294124 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; galactitol utilization operon repressor 3294124 1064551003147 IA1_15785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 galactitol utilization operon repressor YP_008614910.1 3293351 D 1064551 CDS YP_008614911.1 549482238 complement(3294282..3295145) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 16S rRNA methyltransferase 3295145 1064551003148 IA1_15790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 16S rRNA methyltransferase YP_008614911.1 3294282 R 1064551 CDS YP_008614912.1 549480634 3295209..3297251 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein activator LpoA 3297251 1064551003149 IA1_15795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 penicillin-binding protein activator LpoA YP_008614912.1 3295209 D 1064551 CDS YP_008614913.1 549480635 3297209..3297604 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3297604 1064551003150 IA1_15800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614913.1 3297209 D 1064551 CDS YP_008614914.1 549480636 3297626..3298216 1 NC_022525.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoheptose isomerase 3298216 gmhA 1064551003151 gmhA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoheptose isomerase YP_008614914.1 3297626 D 1064551 CDS YP_008614915.1 549480637 3298226..3298801 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein 3298801 1064551003152 IA1_15810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane lipoprotein YP_008614915.1 3298226 D 1064551 CDS YP_008614916.1 549482239 complement(3298868..3299503) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3299503 1064551003153 IA1_15815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614916.1 3298868 R 1064551 CDS YP_008614917.1 549480638 3299634..3300152 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; general stress protein 3300152 1064551003154 IA1_15820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 general stress protein YP_008614917.1 3299634 D 1064551 CDS YP_008614918.1 549480639 complement(3300132..3300575) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3300575 1064551003155 IA1_15825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614918.1 3300132 R 1064551 CDS YP_008614919.1 549482240 3300613..3300930 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GIY-YIG nuclease 3300930 1064551003156 IA1_15830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GIY-YIG nuclease YP_008614919.1 3300613 D 1064551 CDS YP_008614920.1 549482241 complement(3300917..3301420) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; N-acetyltransferase 3301420 1064551003157 IA1_15835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetyltransferase YP_008614920.1 3300917 R 1064551 CDS YP_008614921.1 549482242 complement(3301414..3301938) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3301938 1064551003158 IA1_15840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614921.1 3301414 R 1064551 CDS YP_008614922.1 549480640 3302155..3303150 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 3303150 1064551003159 IA1_15845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protease YP_008614922.1 3302155 D 1064551 CDS YP_008614923.1 549480641 3303159..3304037 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 3304037 1064551003160 IA1_15850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protease YP_008614923.1 3303159 D 1064551 CDS YP_008614924.1 549480642 3304215..3305222 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3305222 1064551003161 IA1_15855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614924.1 3304215 D 1064551 CDS YP_008614925.1 549480643 complement(3305200..3305919) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transpeptidase 3305919 1064551003162 IA1_15860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transpeptidase YP_008614925.1 3305200 R 1064551 CDS YP_008614926.1 549480644 3306078..3306608 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3306608 1064551003163 IA1_15865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614926.1 3306078 D 1064551 CDS YP_008614927.1 549480645 complement(3306669..3307913) 1 NC_022525.1 tryptophan transporter of high affinity; Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan permease 3307913 1064551003164 IA1_15870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tryptophan permease YP_008614927.1 3306669 R 1064551 CDS YP_008614928.1 549480646 complement(3308067..3309956) 1 NC_022525.1 participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 3309956 1064551003165 IA1_15875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA helicase YP_008614928.1 3308067 R 1064551 CDS YP_008614929.1 549480647 complement(3310135..3311019) 1 NC_022525.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein NlpI 3311019 1064551003166 IA1_15880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein NlpI YP_008614929.1 3310135 R 1064551 CDS YP_008614930.1 549480648 complement(3311129..3313294) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; polynucleotide phosphorylase/polyadenylase 3313294 1064551003167 IA1_15885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 polynucleotide phosphorylase/polyadenylase YP_008614930.1 3311129 R 1064551 CDS YP_008614931.1 549480649 complement(3313506..3313775) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S15 3313775 1064551003168 IA1_15890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S15 YP_008614931.1 3313506 R 1064551 CDS YP_008614932.1 549480650 complement(3313926..3314870) 1 NC_022525.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase B 3314870 truB 1064551003169 truB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA pseudouridine synthase B YP_008614932.1 3313926 R 1064551 CDS YP_008614933.1 549480651 complement(3314870..3315271) 1 NC_022525.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-binding factor A 3315271 rbfA 1064551003170 rbfA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribosome-binding factor A YP_008614933.1 3314870 R 1064551 CDS YP_008614934.1 549480652 complement(3315492..3318170) 1 NC_022525.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor IF-2 3318170 infB 1064551003171 infB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 translation initiation factor IF-2 YP_008614934.1 3315492 R 1064551 CDS YP_008614935.1 549480653 complement(3318195..3319697) 1 NC_022525.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M54 3319697 nusA 1064551003172 nusA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidase M54 YP_008614935.1 3318195 R 1064551 CDS YP_008614936.1 549480654 complement(3319725..3320177) 1 NC_022525.1 required for the maturation of the 30S ribosomal subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome maturation protein RimP 3320177 1064551003173 IA1_15915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribosome maturation protein RimP YP_008614936.1 3319725 R 1064551 CDS YP_008614937.1 549480655 3320805..3322148 1 NC_022525.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; argininosuccinate synthase 3322148 1064551003175 IA1_15925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 argininosuccinate synthase YP_008614937.1 3320805 D 1064551 CDS YP_008614938.1 549482243 complement(3322446..3322778) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; preprotein translocase subunit SecG 3322778 secG 1064551003177 secG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 preprotein translocase subunit SecG YP_008614938.1 3322446 R 1064551 CDS YP_008614939.1 549480656 complement(3323001..3324338) 1 NC_022525.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglucosamine mutase 3324338 glmM 1064551003178 glmM Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoglucosamine mutase YP_008614939.1 3323001 R 1064551 CDS YP_008614940.1 549480657 complement(3324331..3325179) 1 NC_022525.1 catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropteroate synthase 3325179 folP 1064551003179 folP Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydropteroate synthase YP_008614940.1 3324331 R 1064551 CDS YP_008614941.1 549480658 complement(3325284..3327218) 1 NC_022525.1 inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent metalloprotease 3327218 hflB 1064551003180 hflB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-dependent metalloprotease YP_008614941.1 3325284 R 1064551 CDS YP_008614942.1 549480659 complement(3327322..3327948) 1 NC_022525.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 3327948 rrmJ 1064551003181 rrmJ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 23S rRNA methyltransferase YP_008614942.1 3327322 R 1064551 CDS YP_008614943.1 549482244 3328036..3328368 1 NC_022525.1 RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RNA-binding protein YhbY 3328368 1064551003182 IA1_15960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA-binding protein YhbY YP_008614943.1 3328036 D 1064551 CDS YP_008614944.1 549480660 complement(3328524..3329000) 1 NC_022525.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription elongation factor GreA 3329000 greA 1064551003183 greA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcription elongation factor GreA YP_008614944.1 3328524 R 1064551 CDS YP_008614945.1 549482245 complement(3329054..3329155) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3329155 1064551003184 IA1_15970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614945.1 3329054 R 1064551 CDS YP_008614946.1 549480661 3329248..3330681 1 NC_022525.1 penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase 3330681 1064551003185 IA1_15975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-alanyl-D-alanine carboxypeptidase YP_008614946.1 3329248 D 1064551 CDS YP_008614947.1 549482246 complement(3330812..3331984) 1 NC_022525.1 ObgE; essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GTPase CgtA 3331984 obgE 1064551003186 obgE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GTPase CgtA YP_008614947.1 3330812 R 1064551 CDS YP_008614948.1 549482247 complement(3332000..3332965) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3332965 1064551003187 IA1_15985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614948.1 3332000 R 1064551 CDS YP_008614949.1 549480662 complement(3333095..3333352) 1 NC_022525.1 involved in the peptidyltransferase reaction during translation; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L27 3333352 rpmA 1064551003188 rpmA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L27 YP_008614949.1 3333095 R 1064551 CDS YP_008614950.1 549480663 complement(3333372..3333683) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L21 3333683 rplU 1064551003189 rplU Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L21 YP_008614950.1 3333372 R 1064551 CDS YP_008614951.1 549480664 3333941..3334912 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; octaprenyl diphosphate synthase 3334912 1064551003190 IA1_16000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 octaprenyl diphosphate synthase YP_008614951.1 3333941 D 1064551 CDS YP_008614952.1 549480665 3335144..3335431 1 NC_022525.1 activator of maltose metabolism genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3335431 1064551003191 IA1_16005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614952.1 3335144 D 1064551 CDS YP_008614953.1 549480666 complement(3335490..3336749) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3336749 1064551003192 IA1_16010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_008614953.1 3335490 R 1064551 CDS YP_008614954.1 549480667 complement(3336803..3337096) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3337096 1064551003193 IA1_16015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614954.1 3336803 R 1064551 CDS YP_008614955.1 549480668 complement(3337245..3337541) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate transporter 3337541 1064551003194 IA1_16020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfate transporter YP_008614955.1 3337245 R 1064551 CDS YP_008614956.1 549480669 complement(3337541..3338176) 1 NC_022525.1 involved in maintaining outer membrane lipid asymmetry; Derived by automated computational analysis using gene prediction method: Protein Homology.; organic solvent ABC transporter substrate-binding protein 3338176 1064551003195 IA1_16025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 organic solvent ABC transporter substrate-binding protein YP_008614956.1 3337541 R 1064551 CDS YP_008614957.1 549480670 complement(3338195..3338746) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipid ABC transporter substrate-binding protein 3338746 1064551003196 IA1_16030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phospholipid ABC transporter substrate-binding protein YP_008614957.1 3338195 R 1064551 CDS YP_008614958.1 549480671 complement(3338751..3339533) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease 3339533 1064551003197 IA1_16035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ABC transporter permease YP_008614958.1 3338751 R 1064551 CDS YP_008614959.1 549480672 complement(3339541..3340353) 1 NC_022525.1 ABC transporter maintaining outer membrane lipid asymmetry; Derived by automated computational analysis using gene prediction method: Protein Homology.; organic solvent ABC transporter ATP-binding protein 3340353 1064551003198 IA1_16040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 organic solvent ABC transporter ATP-binding protein YP_008614959.1 3339541 R 1064551 CDS YP_008614960.1 549480673 3340566..3341543 1 NC_022525.1 YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 3341543 1064551003199 IA1_16045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sodium:proton antiporter YP_008614960.1 3340566 D 1064551 CDS YP_008614961.1 549480674 3341557..3342543 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; D-arabinose 5-phosphate isomerase 3342543 1064551003200 IA1_16050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-arabinose 5-phosphate isomerase YP_008614961.1 3341557 D 1064551 CDS YP_008614962.1 549482248 3342564..3343130 1 NC_022525.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3343130 1064551003201 IA1_16055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_008614962.1 3342564 D 1064551 CDS YP_008614963.1 549482249 3343127..3343702 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar ABC transporter substrate-binding protein 3343702 1064551003202 IA1_16060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar ABC transporter substrate-binding protein YP_008614963.1 3343127 D 1064551 CDS YP_008614964.1 549480675 3343671..3344225 1 NC_022525.1 LptA; periplasmic binding protein part of a putative ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter substrate-binding protein 3344225 1064551003203 IA1_16065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar ABC transporter substrate-binding protein YP_008614964.1 3343671 D 1064551 CDS YP_008614965.1 549480676 3344232..3344957 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate ABC transporter ATP-binding protein 3344957 1064551003204 IA1_16070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfate ABC transporter ATP-binding protein YP_008614965.1 3344232 D 1064551 CDS YP_008614966.1 549480677 3345005..3346438 1 NC_022525.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase factor sigma-54 3346438 1064551003205 IA1_16075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA polymerase factor sigma-54 YP_008614966.1 3345005 D 1064551 CDS YP_008614967.1 549480678 3346461..3346748 1 NC_022525.1 YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome hibernation promoting factor HPF 3346748 1064551003206 IA1_16080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribosome hibernation promoting factor HPF YP_008614967.1 3346461 D 1064551 CDS YP_008614968.1 549480679 3346866..3347357 1 NC_022525.1 involved in nitrogen metabolism; protein IIA is phosphorylated by enzyme I(Ntr); Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIA 3347357 1064551003207 IA1_16085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sugar transporter subunit IIA YP_008614968.1 3346866 D 1064551 CDS YP_008614969.1 549482250 3347403..3348257 1 NC_022525.1 glucosamine-6-phosphate regulated; inactivates the glmS upregulator glmZ; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glmZ(sRNA)-inactivating NTPase 3348257 1064551003208 IA1_16090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glmZ(sRNA)-inactivating NTPase YP_008614969.1 3347403 D 1064551 CDS YP_008614970.1 549480680 3348254..3348526 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphohistidinoprotein-hexose phosphotransferase 3348526 1064551003209 IA1_16095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphohistidinoprotein-hexose phosphotransferase YP_008614970.1 3348254 D 1064551 CDS YP_008614971.1 549480681 3348775..3349407 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3349407 1064551003210 IA1_16100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614971.1 3348775 D 1064551 CDS YP_008614972.1 549480682 complement(3349482..3350210) 1 NC_022525.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; monofunctional biosynthetic peptidoglycan transglycosylase 3350210 mtgA 1064551003211 mtgA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 monofunctional biosynthetic peptidoglycan transglycosylase YP_008614972.1 3349482 R 1064551 CDS YP_008614973.1 549480683 complement(3350207..3350860) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; isoprenoid biosynthesis protein 3350860 1064551003212 IA1_16110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 isoprenoid biosynthesis protein YP_008614973.1 3350207 R 1064551 CDS YP_008614974.1 549482251 complement(3351087..3353423) 1 NC_022525.1 sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aerobic respiration control sensor protein ArcB 3353423 1064551003213 IA1_16115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aerobic respiration control sensor protein ArcB YP_008614974.1 3351087 R 1064551 CDS YP_008614975.1 549480684 complement(3353517..3354446) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3354446 1064551003214 IA1_16120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614975.1 3353517 R 1064551 CDS YP_008614976.1 549480685 3355118..3359578 1 NC_022525.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate synthase subunit alpha 3359578 gltB 1064551003215 gltB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamate synthase subunit alpha YP_008614976.1 3355118 D 1064551 CDS YP_008614977.1 549480686 3359588..3361006 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate synthase subunit beta 3361006 1064551003216 IA1_16135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamate synthase subunit beta YP_008614977.1 3359588 D 1064551 CDS YP_008614978.1 549480687 3361213..3362316 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3362316 1064551003217 IA1_16140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614978.1 3361213 D 1064551 CDS YP_008614979.1 549480688 3362432..3363685 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cytosine permease 3363685 codB 1064551003218 codB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytosine permease YP_008614979.1 3362432 D 1064551 CDS YP_008614980.1 549480689 3363672..3364952 1 NC_022525.1 Catalyzes the deamination of cytosine to uracil and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytosine deaminase 3364952 1064551003219 IA1_16150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytosine deaminase YP_008614980.1 3363672 D 1064551 CDS YP_008614981.1 549480690 complement(3365035..3365502) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3365502 1064551003220 IA1_16155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614981.1 3365035 R 1064551 CDS YP_008614982.1 549480691 complement(3365499..3366374) 1 NC_022525.1 catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmannosamine kinase 3366374 1064551003221 IA1_16160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetylmannosamine kinase YP_008614982.1 3365499 R 1064551 CDS YP_008614983.1 549480692 complement(3366371..3367060) 1 NC_022525.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmannosamine-6-phosphate 2-epimerase 3367060 1064551003222 IA1_16165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetylmannosamine-6-phosphate 2-epimerase YP_008614983.1 3366371 R 1064551 CDS YP_008614984.1 549480693 complement(3367107..3368597) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sialic acid transporter 3368597 1064551003223 IA1_16170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sialic acid transporter YP_008614984.1 3367107 R 1064551 CDS YP_008614985.1 549480694 complement(3368713..3369606) 1 NC_022525.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylneuraminate lyase 3369606 1064551003224 IA1_16175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetylneuraminate lyase YP_008614985.1 3368713 R 1064551 CDS YP_008614986.1 549480695 complement(3369741..3370532) 1 NC_022525.1 Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3370532 1064551003225 IA1_16180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008614986.1 3369741 R 1064551 CDS YP_008614987.1 549480696 complement(3370641..3371141) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase 3371141 1064551003226 IA1_16185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidase YP_008614987.1 3370641 R 1064551 CDS YP_008614988.1 549480697 complement(3371147..3371785) 1 NC_022525.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.; stringent starvation protein A 3371785 sspA 1064551003227 sspA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 stringent starvation protein A YP_008614988.1 3371147 R 1064551 CDS YP_008614989.1 549480698 complement(3372048..3372842) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3372842 1064551003228 IA1_16195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614989.1 3372048 R 1064551 CDS YP_008614990.1 549480699 complement(3373000..3373392) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S9 3373392 1064551003229 IA1_16200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S9 YP_008614990.1 3373000 R 1064551 CDS YP_008614991.1 549480700 complement(3373408..3373836) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L13 3373836 1064551003230 IA1_16205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L13 YP_008614991.1 3373408 R 1064551 CDS YP_008614992.1 549480701 complement(3374124..3375248) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3375248 1064551003231 IA1_16210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614992.1 3374124 R 1064551 CDS YP_008614993.1 549480702 3375435..3375839 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3375839 1064551003232 IA1_16215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008614993.1 3375435 D 1064551 CDS YP_008614994.1 549480703 3375996..3377363 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; serine endoprotease DegQ 3377363 1064551003233 IA1_16220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 serine endoprotease DegQ YP_008614994.1 3375996 D 1064551 CDS YP_008614995.1 549480704 3377456..3378526 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; serine endoprotease 3378526 1064551003234 IA1_16225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 serine endoprotease YP_008614995.1 3377456 D 1064551 CDS YP_008614996.1 549480705 complement(3378560..3379291) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3379291 1064551003235 IA1_16230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008614996.1 3378560 R 1064551 CDS YP_008614997.1 549480706 complement(3379311..3380612) 1 NC_022525.1 catalyzes the formation of pyruvate from oxaloacetate; sodium translocating; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase subunit beta 3380612 1064551003236 IA1_16235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxaloacetate decarboxylase subunit beta YP_008614997.1 3379311 R 1064551 CDS YP_008614998.1 549480707 complement(3380625..3382400) 1 NC_022525.1 catalyzes the formation of pyruvate from oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase 3382400 1064551003237 IA1_16240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxaloacetate decarboxylase YP_008614998.1 3380625 R 1064551 CDS YP_008614999.1 549480708 complement(3382416..3382658) 1 NC_022525.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase subunit gamma 3382658 1064551003238 IA1_16245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxaloacetate decarboxylase subunit gamma YP_008614999.1 3382416 R 1064551 CDS YP_008615000.1 549480709 complement(3382815..3383432) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; L(+)-tartrate dehydratase subunit beta 3383432 1064551003239 IA1_16250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L(+)-tartrate dehydratase subunit beta YP_008615000.1 3382815 R 1064551 CDS YP_008615001.1 549482252 complement(3383432..3384331) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tartrate dehydratase subunit alpha 3384331 1064551003240 IA1_16255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tartrate dehydratase subunit alpha YP_008615001.1 3383432 R 1064551 CDS YP_008615002.1 549480710 complement(3384364..3385632) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transporter 3385632 1064551003241 IA1_16260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cation transporter YP_008615002.1 3384364 R 1064551 CDS YP_008615003.1 549482253 complement(3385843..3386508) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LysR family transcriptional regulator 3386508 1064551003242 IA1_16265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcriptional regulator YP_008615003.1 3385843 R 1064551 CDS YP_008615004.1 549482254 complement(3386495..3387124) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GntR family transcriptional regulator 3387124 1064551003243 IA1_16270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GntR family transcriptional regulator YP_008615004.1 3386495 R 1064551 CDS YP_008615005.1 549480711 complement(3387244..3388182) 1 NC_022525.1 oxidizes malate to oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate dehydrogenase 3388182 1064551003244 IA1_16275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 malate dehydrogenase YP_008615005.1 3387244 R 1064551 CDS YP_008615006.1 549480712 3388597..3389067 1 NC_022525.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine repressor 3389067 1064551003245 IA1_16280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginine repressor YP_008615006.1 3388597 D 1064551 CDS YP_008615007.1 549482255 3389180..3389275 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3389275 1064551003246 IA1_16285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615007.1 3389180 D 1064551 CDS YP_008615008.1 549480713 3389432..3389695 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3389695 1064551003247 IA1_16290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615008.1 3389432 D 1064551 CDS YP_008615009.1 549480714 3389799..3390065 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3390065 1064551003248 IA1_16295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615009.1 3389799 D 1064551 CDS YP_008615010.1 549480715 complement(3390125..3390397) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3390397 1064551003249 IA1_16300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615010.1 3390125 R 1064551 CDS YP_008615011.1 549480716 complement(3390569..3392536) 1 NC_022525.1 with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxybenzoic acid transporter 3392536 1064551003250 IA1_16305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydroxybenzoic acid transporter YP_008615011.1 3390569 R 1064551 CDS YP_008615012.1 549480717 complement(3392542..3393474) 1 NC_022525.1 with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxybenzoic acid transporter 3393474 1064551003251 IA1_16310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydroxybenzoic acid transporter YP_008615012.1 3392542 R 1064551 CDS YP_008615013.1 549480718 complement(3393482..3393685) 1 NC_022525.1 membrane protein AaeX; the gene is a member of the aaeXAB operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein FixA 3393685 1064551003252 IA1_16315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 electron transfer flavoprotein FixA YP_008615013.1 3393482 R 1064551 CDS YP_008615014.1 549480719 3393867..3394796 1 NC_022525.1 for aaeXAB operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3394796 1064551003253 IA1_16320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615014.1 3393867 D 1064551 CDS YP_008615015.1 549480720 complement(3394919..3396364) 1 NC_022525.1 responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; Derived by automated computational analysis using gene prediction method: Protein Homology.; protease TldD 3396364 tldD 1064551003254 tldD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protease TldD YP_008615015.1 3394919 R 1064551 CDS YP_008615016.1 549480721 complement(3396509..3400309) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3400309 1064551003255 IA1_16330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615016.1 3396509 R 1064551 CDS YP_008615017.1 549480722 complement(3400416..3401885) 1 NC_022525.1 involved in the processing of the 5'end of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease G 3401885 1064551003256 IA1_16335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonuclease G YP_008615017.1 3400416 R 1064551 CDS YP_008615018.1 549480723 complement(3401875..3402468) 1 NC_022525.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; Maf 3402468 1064551003257 IA1_16340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Maf YP_008615018.1 3401875 R 1064551 CDS YP_008615019.1 549480724 complement(3402477..3402968) 1 NC_022525.1 part of cell wall structural complex MreBCD; transmembrane component; Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein MreD 3402968 1064551003258 IA1_16345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 rod shape-determining protein MreD YP_008615019.1 3402477 R 1064551 CDS YP_008615020.1 549480725 complement(3402968..3404020) 1 NC_022525.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein MreC 3404020 1064551003259 IA1_16350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 rod shape-determining protein MreC YP_008615020.1 3402968 R 1064551 CDS YP_008615021.1 549480726 complement(3404085..3405128) 1 NC_022525.1 functions in MreBCD complex in some organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein Mbl 3405128 1064551003260 IA1_16355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 rod shape-determining protein Mbl YP_008615021.1 3404085 R 1064551 CDS YP_008615022.1 549480727 complement(3405436..3407376) 1 NC_022525.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 3407376 1064551003261 IA1_16360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 regulatory protein YP_008615022.1 3405436 R 1064551 CDS YP_008615023.1 549480728 3407580..3408554 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; quinone oxidoreductase 3408554 1064551003262 IA1_16365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 quinone oxidoreductase YP_008615023.1 3407580 D 1064551 CDS YP_008615024.1 549480729 3408667..3409671 1 NC_022525.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; requires inner membrane anchor protein YedZ; Derived by automated computational analysis using gene prediction method: Protein Homology.; TMAO/DMSO reductase 3409671 1064551003263 IA1_16370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 TMAO/DMSO reductase YP_008615024.1 3408667 D 1064551 CDS YP_008615025.1 549480730 3409672..3410271 1 NC_022525.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite oxidase subunit YedZ 3410271 1064551003264 IA1_16375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfite oxidase subunit YedZ YP_008615025.1 3409672 D 1064551 CDS YP_008615026.1 549480731 3410664..3411134 1 NC_022525.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase biotin carboxyl carrier protein 3411134 1064551003265 IA1_16380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetyl-CoA carboxylase biotin carboxyl carrier protein YP_008615026.1 3410664 D 1064551 CDS YP_008615027.1 549480732 3411145..3412494 1 NC_022525.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase biotin carboxylase subunit 3412494 1064551003266 IA1_16385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetyl-CoA carboxylase biotin carboxylase subunit YP_008615027.1 3411145 D 1064551 CDS YP_008615028.1 549480733 3412603..3412845 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3412845 1064551003267 IA1_16390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615028.1 3412603 D 1064551 CDS YP_008615029.1 549480734 3412835..3414286 1 NC_022525.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:pantothenate symporter 3414286 panF 1064551003268 panF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sodium:pantothenate symporter YP_008615029.1 3412835 D 1064551 CDS YP_008615030.1 549480735 3414298..3415179 1 NC_022525.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal protein L11 methyltransferase 3415179 prmA 1064551003269 prmA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribosomal protein L11 methyltransferase YP_008615030.1 3414298 D 1064551 CDS YP_008615031.1 549480736 3415840..3416805 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA-dihydrouridine synthase B 3416805 1064551003270 IA1_16405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA-dihydrouridine synthase B YP_008615031.1 3415840 D 1064551 CDS YP_008615032.1 549480737 3416831..3417127 1 NC_022525.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; Derived by automated computational analysis using gene prediction method: Protein Homology.; Fis family transcriptional regulator 3417127 fis 1064551003271 fis Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Fis family transcriptional regulator YP_008615032.1 3416831 D 1064551 CDS YP_008615033.1 549480738 3417213..3418097 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase 3418097 1064551003272 IA1_16415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methyltransferase YP_008615033.1 3417213 D 1064551 CDS YP_008615034.1 549480739 3418180..3418344 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3418344 1064551003273 IA1_16420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615034.1 3418180 D 1064551 CDS YP_008615035.1 549480740 complement(3420597..3421259) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3421259 1064551003275 IA1_16430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615035.1 3420597 R 1064551 CDS YP_008615036.1 549480741 3421673..3422830 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acriflavine resistance protein E 3422830 1064551003276 IA1_16435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acriflavine resistance protein E YP_008615036.1 3421673 D 1064551 CDS YP_008615037.1 549480742 3422842..3425955 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 3425955 1064551003277 IA1_16440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008615037.1 3422842 D 1064551 CDS YP_008615038.1 549482256 3426310..3426414 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3426414 1064551003278 IA1_16445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615038.1 3426310 D 1064551 CDS YP_008615039.1 549482257 complement(3432811..3432963) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3432963 1064551003285 IA1_16480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615039.1 3432811 R 1064551 CDS YP_008615040.1 549480743 3433077..3433631 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3433631 1064551003286 IA1_16485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615040.1 3433077 D 1064551 CDS YP_008615041.1 549482258 complement(3433607..3433864) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3433864 1064551003287 IA1_16490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615041.1 3433607 R 1064551 CDS YP_008615042.1 549480744 complement(3433861..3434679) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate 5-dehydrogenase 3434679 1064551003288 IA1_16495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 shikimate 5-dehydrogenase YP_008615042.1 3433861 R 1064551 CDS YP_008615043.1 549480745 complement(3434684..3435256) 1 NC_022525.1 involved in the biosynthesis of the threonylcarbamoyladenosine (t6A) residue at position 37 of ANN-decoding tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein 3435256 1064551003289 IA1_16500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein YP_008615043.1 3434684 R 1064551 CDS YP_008615044.1 549480746 complement(3435261..3435803) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3435803 1064551003290 IA1_16505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615044.1 3435261 R 1064551 CDS YP_008615045.1 549480747 complement(3435830..3436303) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3436303 1064551003291 IA1_16510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615045.1 3435830 R 1064551 CDS YP_008615046.1 549480748 3437530..3438039 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide deformylase 3438039 1064551003293 IA1_16520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide deformylase YP_008615046.1 3437530 D 1064551 CDS YP_008615047.1 549480749 3438055..3439002 1 NC_022525.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionyl-tRNA formyltransferase 3439002 fmt 1064551003294 fmt Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methionyl-tRNA formyltransferase YP_008615047.1 3438055 D 1064551 CDS YP_008615048.1 549480750 3439054..3440343 1 NC_022525.1 catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 3440343 1064551003295 IA1_16530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 16S rRNA methyltransferase YP_008615048.1 3439054 D 1064551 CDS YP_008615049.1 549480751 3440365..3441741 1 NC_022525.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter peripheral membrane protein 3441741 trkA 1064551003296 trkA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 potassium transporter peripheral membrane protein YP_008615049.1 3440365 D 1064551 CDS YP_008615050.1 549480752 3441883..3442296 1 NC_022525.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; large-conductance mechanosensitive channel 3442296 mscL 1064551003297 mscL Salmonella enterica subsp. enterica serovar Thompson str. RM6836 large-conductance mechanosensitive channel YP_008615050.1 3441883 D 1064551 CDS YP_008615051.1 549480753 complement(3442559..3442984) 1 NC_022525.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc-responsive transcriptional regulator 3442984 zntR 1064551003298 zntR Salmonella enterica subsp. enterica serovar Thompson str. RM6836 zinc-responsive transcriptional regulator YP_008615051.1 3442559 R 1064551 CDS YP_008615052.1 549480754 complement(3442995..3443363) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3443363 1064551003299 IA1_16550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615052.1 3442995 R 1064551 CDS YP_008615053.1 549480755 complement(3443470..3443853) 1 NC_022525.1 is a component of the macrolide binding site in the peptidyl transferase center; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L17 3443853 rplQ 1064551003300 rplQ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L17 YP_008615053.1 3443470 R 1064551 CDS YP_008615054.1 549480756 complement(3443894..3444883) 1 NC_022525.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit alpha 3444883 1064551003301 IA1_16560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-directed RNA polymerase subunit alpha YP_008615054.1 3443894 R 1064551 CDS YP_008615055.1 549480757 complement(3444909..3445529) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S4 3445529 1064551003302 IA1_16565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S4 YP_008615055.1 3444909 R 1064551 CDS YP_008615056.1 549480758 complement(3445563..3445952) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S11 3445952 1064551003303 IA1_16570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S11 YP_008615056.1 3445563 R 1064551 CDS YP_008615057.1 549480759 complement(3445969..3446325) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S13 3446325 1064551003304 IA1_16575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S13 YP_008615057.1 3445969 R 1064551 CDS YP_008615058.1 549480760 complement(3446620..3447951) 1 NC_022525.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecY 3447951 secY 1064551003305 secY Salmonella enterica subsp. enterica serovar Thompson str. RM6836 preprotein translocase subunit SecY YP_008615058.1 3446620 R 1064551 CDS YP_008615059.1 549480761 complement(3447959..3448393) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L15 3448393 1064551003306 IA1_16585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L15 YP_008615059.1 3447959 R 1064551 CDS YP_008615060.1 549480762 complement(3448397..3448576) 1 NC_022525.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L30 3448576 rpmD 1064551003307 rpmD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L30 YP_008615060.1 3448397 R 1064551 CDS YP_008615061.1 549480763 complement(3448580..3449083) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S5 3449083 1064551003308 IA1_16595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S5 YP_008615061.1 3448580 R 1064551 CDS YP_008615062.1 549480764 complement(3449098..3449451) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L18 3449451 1064551003309 IA1_16600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L18 YP_008615062.1 3449098 R 1064551 CDS YP_008615063.1 549480765 complement(3449461..3449994) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L6 3449994 1064551003310 IA1_16605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L6 YP_008615063.1 3449461 R 1064551 CDS YP_008615064.1 549480766 complement(3450007..3450399) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S8 3450399 1064551003311 IA1_16610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S8 YP_008615064.1 3450007 R 1064551 CDS YP_008615065.1 549480767 complement(3450433..3450738) 1 NC_022525.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S14 3450738 rpsN 1064551003312 rpsN Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S14 YP_008615065.1 3450433 R 1064551 CDS YP_008615066.1 549480768 complement(3450753..3451292) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L5 3451292 1064551003313 IA1_16620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L5 YP_008615066.1 3450753 R 1064551 CDS YP_008615067.1 549480769 complement(3451307..3451621) 1 NC_022525.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L24 3451621 rplX 1064551003314 rplX Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L24 YP_008615067.1 3451307 R 1064551 CDS YP_008615068.1 549480770 complement(3451632..3452003) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L14 3452003 1064551003315 IA1_16630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L14 YP_008615068.1 3451632 R 1064551 CDS YP_008615069.1 549480771 complement(3452167..3452421) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S17 3452421 1064551003316 IA1_16635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S17 YP_008615069.1 3452167 R 1064551 CDS YP_008615070.1 549482259 complement(3452421..3452612) 1 NC_022525.1 one of the stabilizing components for the large ribosomal subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 50S ribosomal protein L29 3452612 1064551003317 IA1_16640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L29 YP_008615070.1 3452421 R 1064551 CDS YP_008615071.1 549480772 complement(3452612..3453022) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L16 3453022 1064551003318 IA1_16645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L16 YP_008615071.1 3452612 R 1064551 CDS YP_008615072.1 549480773 complement(3453035..3453736) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S3 3453736 1064551003319 IA1_16650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S3 YP_008615072.1 3453035 R 1064551 CDS YP_008615073.1 549480774 complement(3453754..3454086) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L22 3454086 1064551003320 IA1_16655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L22 YP_008615073.1 3453754 R 1064551 CDS YP_008615074.1 549482260 complement(3454101..3454379) 1 NC_022525.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 30S ribosomal protein S19 3454379 rpsS 1064551003321 rpsS Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S19 YP_008615074.1 3454101 R 1064551 CDS YP_008615075.1 549480775 complement(3454396..3455217) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L2 3455217 1064551003322 IA1_16665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L2 YP_008615075.1 3454396 R 1064551 CDS YP_008615076.1 549480776 complement(3455235..3455537) 1 NC_022525.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L23 3455537 rplW 1064551003323 rplW Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L23 YP_008615076.1 3455235 R 1064551 CDS YP_008615077.1 549480777 complement(3455534..3456139) 1 NC_022525.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L4 3456139 rplD 1064551003324 rplD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L4 YP_008615077.1 3455534 R 1064551 CDS YP_008615078.1 549480778 complement(3456150..3456779) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L3 3456779 1064551003325 IA1_16680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L3 YP_008615078.1 3456150 R 1064551 CDS YP_008615079.1 549480779 complement(3456812..3457123) 1 NC_022525.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S10 3457123 rpsJ 1064551003326 rpsJ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S10 YP_008615079.1 3456812 R 1064551 CDS YP_008615080.1 549480780 3457503..3457970 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; leader peptidase hopD 3457970 1064551003327 IA1_16690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 leader peptidase hopD YP_008615080.1 3457503 D 1064551 CDS YP_008615081.1 549482261 complement(3457967..3458443) 1 NC_022525.1 iron storage protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; bacterioferritin 3458443 1064551003328 IA1_16695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bacterioferritin YP_008615081.1 3457967 R 1064551 CDS YP_008615082.1 549480781 complement(3458516..3458710) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; bacterioferritin-associated ferredoxin 3458710 1064551003329 IA1_16700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bacterioferritin-associated ferredoxin YP_008615082.1 3458516 R 1064551 CDS YP_008615083.1 549482262 complement(3458895..3460079) 1 NC_022525.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; elongation factor Tu 3460079 tuf 1064551003330 tuf Salmonella enterica subsp. enterica serovar Thompson str. RM6836 elongation factor Tu YP_008615083.1 3458895 R 1064551 CDS YP_008615084.1 549480782 complement(3460151..3462265) 1 NC_022525.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor G 3462265 fusA 1064551003331 fusA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 elongation factor G YP_008615084.1 3460151 R 1064551 CDS YP_008615085.1 549480783 complement(3462362..3462832) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S7 3462832 1064551003332 IA1_16715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S7 YP_008615085.1 3462362 R 1064551 CDS YP_008615086.1 549480784 complement(3462928..3463302) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S12 3463302 1064551003333 IA1_16720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S12 YP_008615086.1 3462928 R 1064551 CDS YP_008615087.1 549480785 complement(3463428..3463715) 1 NC_022525.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur transfer complex subunit TusB 3463715 1064551003334 IA1_16725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfur transfer complex subunit TusB YP_008615087.1 3463428 R 1064551 CDS YP_008615088.1 549480786 complement(3463723..3464079) 1 NC_022525.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur transfer that results in thiouridation to U34 position in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur relay protein TusC 3464079 1064551003335 IA1_16730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfur relay protein TusC YP_008615088.1 3463723 R 1064551 CDS YP_008615089.1 549480787 complement(3464079..3464465) 1 NC_022525.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur transfer complex subunit TusD 3464465 1064551003336 IA1_16735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfur transfer complex subunit TusD YP_008615089.1 3464079 R 1064551 CDS YP_008615090.1 549480788 complement(3464465..3465187) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3465187 1064551003337 IA1_16740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615090.1 3464465 R 1064551 CDS YP_008615091.1 549480789 complement(3465464..3466282) 1 NC_022525.1 rotamase; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase 3466282 1064551003338 IA1_16745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidyl-prolyl cis-trans isomerase YP_008615091.1 3465464 R 1064551 CDS YP_008615092.1 549480790 3466502..3466720 1 NC_022525.1 required for phi X174 lysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysis protein 3466720 1064551003339 IA1_16750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lysis protein YP_008615092.1 3466502 D 1064551 CDS YP_008615093.1 549480791 complement(3466912..3467502) 1 NC_022525.1 rotamase; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase 3467502 1064551003340 IA1_16755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidyl-prolyl cis-trans isomerase YP_008615093.1 3466912 R 1064551 CDS YP_008615094.1 549480792 complement(3467597..3467797) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3467797 1064551003341 IA1_16760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615094.1 3467597 R 1064551 CDS YP_008615095.1 549480793 complement(3467807..3469612) 1 NC_022525.1 transport system that facilitates potassium-efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter 3469612 1064551003342 IA1_16765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 potassium transporter YP_008615095.1 3467807 R 1064551 CDS YP_008615096.1 549480794 complement(3469612..3470163) 1 NC_022525.1 required for KefB activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter 3470163 1064551003343 IA1_16770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 potassium transporter YP_008615096.1 3469612 R 1064551 CDS YP_008615097.1 549480795 3470429..3472336 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein 3472336 1064551003344 IA1_16775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathione ABC transporter ATP-binding protein YP_008615097.1 3470429 D 1064551 CDS YP_008615098.1 549482263 3472499..3472720 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter ATPase 3472720 1064551003345 IA1_16780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ABC transporter ATPase YP_008615098.1 3472499 D 1064551 CDS YP_008615099.1 549480796 complement(3472722..3473033) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; monooxygenase 3473033 1064551003346 IA1_16785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 monooxygenase YP_008615099.1 3472722 R 1064551 CDS YP_008615100.1 549480797 3473231..3474298 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 3474298 1064551003347 IA1_16790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrolase YP_008615100.1 3473231 D 1064551 CDS YP_008615101.1 549482264 3474295..3474513 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3474513 1064551003348 IA1_16795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615101.1 3474295 D 1064551 CDS YP_008615102.1 549480798 3474565..3475434 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribulokinase 3475434 1064551003349 IA1_16800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoribulokinase YP_008615102.1 3474565 D 1064551 CDS YP_008615103.1 549482265 complement(3475530..3475934) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3475934 1064551003350 IA1_16805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615103.1 3475530 R 1064551 CDS YP_008615104.1 549480799 3476242..3476874 1 NC_022525.1 cAMP receptor protein; complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3476874 1064551003351 IA1_16810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615104.1 3476242 D 1064551 CDS YP_008615105.1 549480800 3476923..3479010 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3479010 1064551003352 IA1_16815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615105.1 3476923 D 1064551 CDS YP_008615106.1 549480801 complement(3479053..3480270) 1 NC_022525.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyldiaminopimelate aminotransferase 3480270 argD 1064551003353 argD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 succinyldiaminopimelate aminotransferase YP_008615106.1 3479053 R 1064551 CDS YP_008615107.1 549480802 complement(3480356..3480919) 1 NC_022525.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; anthranilate synthase subunit II 3480919 1064551003354 IA1_16825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 anthranilate synthase subunit II YP_008615107.1 3480356 R 1064551 CDS YP_008615108.1 549480803 complement(3480951..3481553) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cell filamentation protein Fic 3481553 1064551003355 IA1_16830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell filamentation protein Fic YP_008615108.1 3480951 R 1064551 CDS YP_008615109.1 549482266 complement(3481543..3481815) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; antitoxin 3481815 1064551003356 IA1_16835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 antitoxin YP_008615109.1 3481543 R 1064551 CDS YP_008615110.1 549480804 complement(3481819..3482391) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase 3482391 1064551003357 IA1_16840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidyl-prolyl cis-trans isomerase YP_008615110.1 3481819 R 1064551 CDS YP_008615111.1 549480805 3482668..3483849 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3483849 1064551003358 IA1_16845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008615111.1 3482668 D 1064551 CDS YP_008615112.1 549482267 3484112..3486655 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; nitrite reductase subunit NirD 3486655 1064551003359 IA1_16850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrite reductase subunit NirD YP_008615112.1 3484112 D 1064551 CDS YP_008615113.1 549482268 3486652..3486978 1 NC_022525.1 involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; nitrite reductase small subunit 3486978 nirD 1064551003360 nirD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrite reductase small subunit YP_008615113.1 3486652 D 1064551 CDS YP_008615114.1 549480806 3487244..3488053 1 NC_022525.1 member of the FNT family of formate and nitrite transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite transporter NirC 3488053 1064551003361 IA1_16860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrite transporter NirC YP_008615114.1 3487244 D 1064551 CDS YP_008615115.1 549480807 3488065..3489438 1 NC_022525.1 multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin; Derived by automated computational analysis using gene prediction method: Protein Homology.; siroheme synthase 3489438 cysG 1064551003362 cysG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 siroheme synthase YP_008615115.1 3488065 D 1064551 CDS YP_008615116.1 549482269 3489776..3495634 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; surface-exposed virulence protein BigA 3495634 1064551003363 IA1_16870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 surface-exposed virulence protein BigA YP_008615116.1 3489776 D 1064551 CDS YP_008615117.1 549482270 3495827..3495997 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3495997 1064551003364 IA1_16875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615117.1 3495827 D 1064551 CDS YP_008615118.1 549480808 complement(3496142..3497146) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophanyl-tRNA synthetase 3497146 1064551003365 IA1_16880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tryptophanyl-tRNA synthetase YP_008615118.1 3496142 R 1064551 CDS YP_008615119.1 549480809 complement(3497139..3497897) 1 NC_022525.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycolate phosphatase 3497897 1064551003366 IA1_16885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoglycolate phosphatase YP_008615119.1 3497139 R 1064551 CDS YP_008615120.1 549480810 complement(3497890..3498567) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ribulose-phosphate 3-epimerase 3498567 1064551003367 IA1_16890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribulose-phosphate 3-epimerase YP_008615120.1 3497890 R 1064551 CDS YP_008615121.1 549480811 complement(3498585..3499421) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA adenine methylase 3499421 1064551003368 IA1_16895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA adenine methylase YP_008615121.1 3498585 R 1064551 CDS YP_008615122.1 549480812 complement(3499602..3500879) 1 NC_022525.1 binds the septal ring; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein DamX 3500879 1064551003369 IA1_16900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein DamX YP_008615122.1 3499602 R 1064551 CDS YP_008615123.1 549480813 complement(3500977..3502065) 1 NC_022525.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-dehydroquinate synthase 3502065 aroB 1064551003370 aroB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-dehydroquinate synthase YP_008615123.1 3500977 R 1064551 CDS YP_008615124.1 549480814 complement(3502122..3502643) 1 NC_022525.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate kinase 3502643 aroK 1064551003371 aroK Salmonella enterica subsp. enterica serovar Thompson str. RM6836 shikimate kinase YP_008615124.1 3502122 R 1064551 CDS YP_008615125.1 549480815 complement(3503108..3504346) 1 NC_022525.1 outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin HofQ 3504346 hofQ 1064551003372 hofQ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane porin HofQ YP_008615125.1 3503108 R 1064551 CDS YP_008615126.1 549482271 complement(3504261..3504662) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA utilization protein HofP 3504662 1064551003373 IA1_16920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA utilization protein HofP YP_008615126.1 3504261 R 1064551 CDS YP_008615127.1 549480816 complement(3504652..3505125) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3505125 1064551003374 IA1_16925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615127.1 3504652 R 1064551 CDS YP_008615128.1 549480817 complement(3505109..3505648) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PilN family protein 3505648 1064551003375 IA1_16930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PilN family protein YP_008615128.1 3505109 R 1064551 CDS YP_008615129.1 549480818 complement(3505648..3506427) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA utilization protein HofM 3506427 1064551003376 IA1_16935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA utilization protein HofM YP_008615129.1 3505648 R 1064551 CDS YP_008615130.1 549480819 3506548..3509100 1 NC_022525.1 bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 1a 3509100 mrcA 1064551003377 mrcA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 penicillin-binding protein 1a YP_008615130.1 3506548 D 1064551 CDS YP_008615131.1 549480820 complement(3509196..3509759) 1 NC_022525.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosine nucleotide hydrolase 3509759 nudE 1064551003378 nudE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adenosine nucleotide hydrolase YP_008615131.1 3509196 R 1064551 CDS YP_008615132.1 549480821 3510082..3512214 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Intracellular growth attenuator protein igaA 3512214 1064551003379 IA1_16950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Intracellular growth attenuator protein igaA YP_008615132.1 3510082 D 1064551 CDS YP_008615133.1 549480822 3512279..3512947 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotidase 3512947 1064551003380 IA1_16955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleotidase YP_008615133.1 3512279 D 1064551 CDS YP_008615134.1 549480823 3512958..3513359 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-associated heat shock protein Hsp15 3513359 1064551003381 IA1_16960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribosome-associated heat shock protein Hsp15 YP_008615134.1 3512958 D 1064551 CDS YP_008615135.1 549480824 3513378..3514262 1 NC_022525.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Derived by automated computational analysis using gene prediction method: Protein Homology.; Hsp33 chaperonin 3514262 hslO 1064551003382 hslO Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Hsp33 chaperonin YP_008615135.1 3513378 D 1064551 CDS YP_008615136.1 549480825 complement(3514373..3516082) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3516082 1064551003383 IA1_16970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615136.1 3514373 R 1064551 CDS YP_008615137.1 549480826 3516462..3518081 1 NC_022525.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate carboxykinase 3518081 1064551003384 IA1_16975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoenolpyruvate carboxykinase YP_008615137.1 3516462 D 1064551 CDS YP_008615138.1 549480827 complement(3518156..3519508) 1 NC_022525.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; Derived by automated computational analysis using gene prediction method: Protein Homology.; osmolarity sensor protein 3519508 envZ 1064551003385 envZ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 osmolarity sensor protein YP_008615138.1 3518156 R 1064551 CDS YP_008615139.1 549480828 complement(3519505..3520224) 1 NC_022525.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3520224 ompR 1064551003386 ompR Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615139.1 3519505 R 1064551 CDS YP_008615140.1 549480829 3520450..3520923 1 NC_022525.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription elongation factor GreB 3520923 greB 1064551003387 greB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcription elongation factor GreB YP_008615140.1 3520450 D 1064551 CDS YP_008615141.1 549480830 3521022..3523352 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription accessory protein 3523352 1064551003388 IA1_16995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcription accessory protein YP_008615141.1 3521022 D 1064551 CDS YP_008615142.1 549480831 3523789..3524016 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 3524016 feoA 1064551003389 feoA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron transporter YP_008615142.1 3523789 D 1064551 CDS YP_008615143.1 549480832 3524035..3526353 1 NC_022525.1 cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 3526353 feoB 1064551003390 feoB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron transporter YP_008615143.1 3524035 D 1064551 CDS YP_008615144.1 549480833 3526366..3526602 1 NC_022525.1 regulatory protein that controls transcription of feoABC genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 3526602 1064551003391 IA1_17010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron transporter YP_008615144.1 3526366 D 1064551 CDS YP_008615145.1 549480834 3526837..3527751 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3527751 1064551003392 IA1_17015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615145.1 3526837 D 1064551 CDS YP_008615146.1 549480835 complement(3527787..3528557) 1 NC_022525.1 Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxylesterase BioH 3528557 1064551003393 IA1_17020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carboxylesterase BioH YP_008615146.1 3527787 R 1064551 CDS YP_008615147.1 549480836 3528595..3529278 1 NC_022525.1 required for utilization of DNA as the sole source of carbon and energy; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA utilization protein GntX 3529278 1064551003394 IA1_17025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA utilization protein GntX YP_008615147.1 3528595 D 1064551 CDS YP_008615148.1 549480837 3529337..3529912 1 NC_022525.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe/S biogenesis protein NfuA 3529912 1064551003395 IA1_17030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Fe/S biogenesis protein NfuA YP_008615148.1 3529337 D 1064551 CDS YP_008615149.1 549480838 3530289..3531605 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Gnt-II system L-idonate transporter IdnT 3531605 1064551003396 IA1_17035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Gnt-II system L-idonate transporter IdnT YP_008615149.1 3530289 D 1064551 CDS YP_008615150.1 549480839 complement(3531724..3533802) 1 NC_022525.1 amylomaltase; acts to release glucose from maltodextrins; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-alpha-glucanotransferase 3533802 malQ 1064551003397 malQ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-alpha-glucanotransferase YP_008615150.1 3531724 R 1064551 CDS YP_008615151.1 549480840 complement(3533812..3536205) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen phosphorylase 3536205 1064551003398 IA1_17045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycogen phosphorylase YP_008615151.1 3533812 R 1064551 CDS YP_008615152.1 549480841 3536800..3539505 1 NC_022525.1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3539505 1064551003399 IA1_17050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615152.1 3536800 D 1064551 CDS YP_008615153.1 549482272 complement(3539647..3540207) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3540207 1064551003400 IA1_17055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615153.1 3539647 R 1064551 CDS YP_008615154.1 549480842 complement(3540204..3541238) 1 NC_022525.1 catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA 3'-terminal-phosphate cyclase 3541238 1064551003401 IA1_17060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA 3'-terminal-phosphate cyclase YP_008615154.1 3540204 R 1064551 CDS YP_008615155.1 549480843 complement(3541242..3542456) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; RTCB protein 3542456 1064551003402 IA1_17065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RTCB protein YP_008615155.1 3541242 R 1064551 CDS YP_008615156.1 549482273 complement(3542804..3544357) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RNA-binding protein 3544357 1064551003403 IA1_17070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA-binding protein YP_008615156.1 3542804 R 1064551 CDS YP_008615157.1 549480844 3544547..3546130 1 NC_022525.1 with GlrK is part of a two-component signal transduction system regulating glmY; Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator 3546130 1064551003404 IA1_17075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 response regulator YP_008615157.1 3544547 D 1064551 CDS YP_008615158.1 549480845 complement(3546127..3546885) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 3546885 1064551003405 IA1_17080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DeoR family transcriptional regulator YP_008615158.1 3546127 R 1064551 CDS YP_008615159.1 549480846 complement(3546979..3547809) 1 NC_022525.1 protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; Derived by automated computational analysis using gene prediction method: Protein Homology.; intramembrane serine protease GlpG 3547809 1064551003406 IA1_17085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 intramembrane serine protease GlpG YP_008615159.1 3546979 R 1064551 CDS YP_008615160.1 549480847 complement(3547885..3548226) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate sulfurtransferase 3548226 1064551003407 IA1_17090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiosulfate sulfurtransferase YP_008615160.1 3547885 R 1064551 CDS YP_008615161.1 549480848 3548410..3549918 1 NC_022525.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate dehydrogenase 3549918 glpD 1064551003408 glpD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerol-3-phosphate dehydrogenase YP_008615161.1 3548410 D 1064551 CDS YP_008615162.1 549480849 complement(3549965..3550510) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3550510 1064551003409 IA1_17100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615162.1 3549965 R 1064551 CDS YP_008615163.1 549482274 complement(3550520..3552016) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphate-binding protein 3552016 1064551003410 IA1_17105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphate-binding protein YP_008615163.1 3550520 R 1064551 CDS YP_008615164.1 549480850 complement(3552174..3553283) 1 NC_022525.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol dehydrogenase 3553283 gldA 1064551003411 gldA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerol dehydrogenase YP_008615164.1 3552174 R 1064551 CDS YP_008615165.1 549482275 3553624..3554955 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 2-ketogluconate transporter 3554955 1064551003412 IA1_17115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-ketogluconate transporter YP_008615165.1 3553624 D 1064551 CDS YP_008615166.1 549482276 3554952..3556667 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dihydroxy-acid dehydratase 3556667 1064551003413 IA1_17120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydroxy-acid dehydratase YP_008615166.1 3554952 D 1064551 CDS YP_008615167.1 549480851 3556711..3557616 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxy-galactonate aldolase 3557616 1064551003414 IA1_17125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-keto-3-deoxy-galactonate aldolase YP_008615167.1 3556711 D 1064551 CDS YP_008615168.1 549480852 complement(3557660..3558415) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator 3558415 1064551003415 IA1_17130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IclR family transcriptional regulator YP_008615168.1 3557660 R 1064551 CDS YP_008615169.1 549480853 complement(3558593..3561040) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen phosphorylase 3561040 1064551003416 IA1_17135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycogen phosphorylase YP_008615169.1 3558593 R 1064551 CDS YP_008615170.1 549480854 complement(3561060..3562493) 1 NC_022525.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen synthase 3562493 glgA 1064551003417 glgA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycogen synthase YP_008615170.1 3561060 R 1064551 CDS YP_008615171.1 549480855 complement(3562493..3563788) 1 NC_022525.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-1-phosphate adenylyltransferase 3563788 glgC 1064551003418 glgC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucose-1-phosphate adenylyltransferase YP_008615171.1 3562493 R 1064551 CDS YP_008615172.1 549480856 complement(3563803..3565779) 1 NC_022525.1 catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen-debranching protein 3565779 1064551003419 IA1_17150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycogen-debranching protein YP_008615172.1 3563803 R 1064551 CDS YP_008615173.1 549480857 complement(3565776..3567962) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen-branching protein 3567962 1064551003420 IA1_17155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycogen-branching protein YP_008615173.1 3565776 R 1064551 CDS YP_008615174.1 549480858 complement(3568309..3569415) 1 NC_022525.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate-semialdehyde dehydrogenase 3569415 1064551003421 IA1_17160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aspartate-semialdehyde dehydrogenase YP_008615174.1 3568309 R 1064551 CDS YP_008615175.1 549480859 complement(3569838..3571178) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; gluconate transporter 3571178 1064551003422 IA1_17165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 gluconate transporter YP_008615175.1 3569838 R 1064551 CDS YP_008615176.1 549480860 complement(3571175..3571708) 1 NC_022525.1 thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; gluconate kinase 1 3571708 gntK 1064551003423 gntK Salmonella enterica subsp. enterica serovar Thompson str. RM6836 gluconate kinase 1 YP_008615176.1 3571175 R 1064551 CDS YP_008615177.1 549480861 complement(3571847..3572842) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3572842 1064551003424 IA1_17175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615177.1 3571847 R 1064551 CDS YP_008615178.1 549480862 complement(3572972..3573667) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; quercetin 2,3-dioxygenase 3573667 1064551003425 IA1_17180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 quercetin 2,3-dioxygenase YP_008615178.1 3572972 R 1064551 CDS YP_008615179.1 549480863 complement(3573791..3574828) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 3574828 1064551003426 IA1_17185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oxidoreductase YP_008615179.1 3573791 R 1064551 CDS YP_008615180.1 549482277 3574887..3575012 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3575012 1064551003427 IA1_17190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615180.1 3574887 D 1064551 CDS YP_008615181.1 549480864 3575296..3575784 1 NC_022525.1 YhhY; regulated by the fur regulator; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase 3575784 1064551003428 IA1_17195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetyltransferase YP_008615181.1 3575296 D 1064551 CDS YP_008615182.1 549482278 complement(3575865..3575981) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3575981 1064551003429 IA1_17200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615182.1 3575865 R 1064551 CDS YP_008615183.1 549480865 3576049..3577263 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 3577263 1064551003430 IA1_17205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 regulatory protein YP_008615183.1 3576049 D 1064551 CDS YP_008615184.1 549480866 3577279..3578040 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3578040 1064551003431 IA1_17210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615184.1 3577279 D 1064551 CDS YP_008615185.1 549480867 3578094..3579065 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3579065 1064551003432 IA1_17215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615185.1 3578094 D 1064551 CDS YP_008615186.1 549480868 3579062..3580096 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotriesterase 3580096 1064551003433 IA1_17220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphotriesterase YP_008615186.1 3579062 D 1064551 CDS YP_008615187.1 549480869 complement(3580141..3581883) 1 NC_022525.1 periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyltranspeptidase 3581883 ggt 1064551003434 ggt Salmonella enterica subsp. enterica serovar Thompson str. RM6836 gamma-glutamyltranspeptidase YP_008615187.1 3580141 R 1064551 CDS YP_008615188.1 549480870 3582009..3582425 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3582425 1064551003435 IA1_17230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615188.1 3582009 D 1064551 CDS YP_008615189.1 549480871 complement(3582438..3583178) 1 NC_022525.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoplasmic glycerophosphodiester phosphodiesterase 3583178 ugpQ 1064551003436 ugpQ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytoplasmic glycerophosphodiester phosphodiesterase YP_008615189.1 3582438 R 1064551 CDS YP_008615190.1 549480872 complement(3583175..3584245) 1 NC_022525.1 part of the UgpABCE glycerol-3-phosphate uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate ABC transporter ATP-binding protein 3584245 ugpC 1064551003437 ugpC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerol-3-phosphate ABC transporter ATP-binding protein YP_008615190.1 3583175 R 1064551 CDS YP_008615191.1 549480873 complement(3584247..3585092) 1 NC_022525.1 with UgpABC is involved in uptake of glycerol-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate transporter membrane protein 3585092 1064551003438 IA1_17245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerol-3-phosphate transporter membrane protein YP_008615191.1 3584247 R 1064551 CDS YP_008615192.1 549480874 complement(3585089..3585976) 1 NC_022525.1 with UgpEC is involved in the uptake of glycerol-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate transporter permease 3585976 1064551003439 IA1_17250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerol-3-phosphate transporter permease YP_008615192.1 3585089 R 1064551 CDS YP_008615193.1 549480875 complement(3586081..3587397) 1 NC_022525.1 with UgpACE is involved in the uptake of glycerol-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate ABC transporter substrate-binding protein 3587397 1064551003440 IA1_17255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerol-3-phosphate ABC transporter substrate-binding protein YP_008615193.1 3586081 R 1064551 CDS YP_008615194.1 549482279 complement(3587656..3588024) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3588024 1064551003441 IA1_17260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615194.1 3587656 R 1064551 CDS YP_008615195.1 549480876 complement(3588021..3588248) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin 3588248 1064551003442 IA1_17265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 antitoxin YP_008615195.1 3588021 R 1064551 CDS YP_008615196.1 549482280 complement(3588374..3589087) 1 NC_022525.1 with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; amino acid ABC transporter ATP-binding protein 3589087 livF 1064551003443 livF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid ABC transporter ATP-binding protein YP_008615196.1 3588374 R 1064551 CDS YP_008615197.1 549482281 complement(3589089..3589856) 1 NC_022525.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; amino acid ABC transporter ATP-binding protein 3589856 livG 1064551003444 livG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid ABC transporter ATP-binding protein YP_008615197.1 3589089 R 1064551 CDS YP_008615198.1 549480877 complement(3589853..3591130) 1 NC_022525.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucine/isoleucine/valine transporter permease subunit 3591130 livM 1064551003445 livM Salmonella enterica subsp. enterica serovar Thompson str. RM6836 leucine/isoleucine/valine transporter permease subunit YP_008615198.1 3589853 R 1064551 CDS YP_008615199.1 549480878 complement(3591127..3592053) 1 NC_022525.1 LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid transporter permease subunit LivH 3592053 1064551003446 IA1_17285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 branched-chain amino acid transporter permease subunit LivH YP_008615199.1 3591127 R 1064551 CDS YP_008615200.1 549480879 complement(3592113..3593222) 1 NC_022525.1 with LivFGHM is involved in the high affinity leucine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein 3593222 1064551003447 IA1_17290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid ABC transporter substrate-binding protein YP_008615200.1 3592113 R 1064551 CDS YP_008615201.1 549482282 3593644..3594027 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3594027 1064551003448 IA1_17295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615201.1 3593644 D 1064551 CDS YP_008615202.1 549480880 complement(3594223..3595326) 1 NC_022525.1 with LivFGHM is involved in the high affinity leucine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein 3595326 1064551003449 IA1_17300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid ABC transporter substrate-binding protein YP_008615202.1 3594223 R 1064551 CDS YP_008615203.1 549480881 complement(3595648..3596502) 1 NC_022525.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase factor sigma-32 3596502 1064551003450 IA1_17305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA polymerase factor sigma-32 YP_008615203.1 3595648 R 1064551 CDS YP_008615204.1 549482283 complement(3596748..3597803) 1 NC_022525.1 ABC transporter, membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cell division protein FtsX 3597803 ftsX 1064551003451 ftsX Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsX YP_008615204.1 3596748 R 1064551 CDS YP_008615205.1 549482284 complement(3597796..3598464) 1 NC_022525.1 ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cell division protein FtsE 3598464 1064551003452 IA1_17315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsE YP_008615205.1 3597796 R 1064551 CDS YP_008615206.1 549480882 complement(3598467..3599942) 1 NC_022525.1 cell division protein; signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsY 3599942 1064551003453 IA1_17320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsY YP_008615206.1 3598467 R 1064551 CDS YP_008615207.1 549480883 3600068..3600664 1 NC_022525.1 catalyzes the methylation of 16S rRNA at position G966; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 3600664 rsmD 1064551003454 rsmD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 16S rRNA methyltransferase YP_008615207.1 3600068 D 1064551 CDS YP_008615208.1 549480884 3600654..3600923 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3600923 1064551003455 IA1_17330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615208.1 3600654 D 1064551 CDS YP_008615209.1 549482285 complement(3600945..3601316) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3601316 1064551003456 IA1_17335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615209.1 3600945 R 1064551 CDS YP_008615210.1 549480885 3601458..3602084 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3602084 1064551003457 IA1_17340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615210.1 3601458 D 1064551 CDS YP_008615211.1 549480886 3602165..3604363 1 NC_022525.1 P-type ATPase involved in the export of lead, cadmium, zinc and mercury; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc/cadmium/mercury/lead-transporting ATPase 3604363 zntA 1064551003458 zntA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 zinc/cadmium/mercury/lead-transporting ATPase YP_008615211.1 3602165 D 1064551 CDS YP_008615212.1 549480887 3604563..3606206 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein 3606206 1064551003459 IA1_17350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methyl-accepting chemotaxis protein YP_008615212.1 3604563 D 1064551 CDS YP_008615213.1 549482286 complement(3606230..3606565) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3606565 1064551003460 IA1_17355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615213.1 3606230 R 1064551 CDS YP_008615214.1 549480888 3606570..3607310 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3607310 1064551003461 IA1_17360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615214.1 3606570 D 1064551 CDS YP_008615215.1 549480889 3607383..3607940 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3607940 1064551003462 IA1_17365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615215.1 3607383 D 1064551 CDS YP_008615216.1 549480890 complement(3607944..3609161) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 3609161 1064551003463 IA1_17370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MFS transporter YP_008615216.1 3607944 R 1064551 CDS YP_008615217.1 549480891 3609293..3610342 1 NC_022525.1 transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; pheromone autoinducer 2 transporter 3610342 tqsA 1064551003464 tqsA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pheromone autoinducer 2 transporter YP_008615217.1 3609293 D 1064551 CDS YP_008615218.1 549480892 3610394..3610972 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ACP synthase 3610972 1064551003465 IA1_17380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ACP synthase YP_008615218.1 3610394 D 1064551 CDS YP_008615219.1 549480893 3611028..3611465 1 NC_022525.1 Inhibits transcription at high concentrations of nickel; Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel responsive regulator 3611465 1064551003466 IA1_17385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nickel responsive regulator YP_008615219.1 3611028 D 1064551 CDS YP_008615220.1 549480894 complement(3611567..3612691) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3612691 1064551003467 IA1_17390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615220.1 3611567 R 1064551 CDS YP_008615221.1 549480895 complement(3612691..3615432) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein 3615432 1064551003468 IA1_17395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug ABC transporter ATP-binding protein YP_008615221.1 3612691 R 1064551 CDS YP_008615222.1 549480896 complement(3615429..3616496) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3616496 1064551003469 IA1_17400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615222.1 3615429 R 1064551 CDS YP_008615223.1 549480897 complement(3616802..3617998) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3617998 1064551003470 IA1_17405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615223.1 3616802 R 1064551 CDS YP_008615224.1 549480898 3618229..3619725 1 NC_022525.1 involved in the transport of inorganic phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate transporter PitA 3619725 1064551003471 IA1_17410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphate transporter PitA YP_008615224.1 3618229 D 1064551 CDS YP_008615225.1 549480899 complement(3619845..3620180) 1 NC_022525.1 ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein B 3620180 1064551003472 IA1_17415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 universal stress protein B YP_008615225.1 3619845 R 1064551 CDS YP_008615226.1 549480900 3620568..3621002 1 NC_022525.1 involved in resistance to DNA-damaging agents; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein A 3621002 1064551003473 IA1_17420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 universal stress protein A YP_008615226.1 3620568 D 1064551 CDS YP_008615227.1 549480901 3621327..3622799 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 3622799 1064551003474 IA1_17425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MFS transporter YP_008615227.1 3621327 D 1064551 CDS YP_008615228.1 549480902 complement(3622891..3623649) 1 NC_022525.1 predicted SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase 3623649 1064551003475 IA1_17430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methyltransferase YP_008615228.1 3622891 R 1064551 CDS YP_008615229.1 549480903 complement(3623656..3625698) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; oligopeptidase A 3625698 1064551003476 IA1_17435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oligopeptidase A YP_008615229.1 3623656 R 1064551 CDS YP_008615230.1 549480904 complement(3625880..3627151) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoesterase PA-phosphatase 3627151 1064551003477 IA1_17440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoesterase PA-phosphatase YP_008615230.1 3625880 R 1064551 CDS YP_008615231.1 549480905 3627362..3628204 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3628204 1064551003478 IA1_17445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615231.1 3627362 D 1064551 CDS YP_008615232.1 549480906 3628309..3629661 1 NC_022525.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione reductase 3629661 1064551003479 IA1_17450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathione reductase YP_008615232.1 3628309 D 1064551 CDS YP_008615233.1 549480907 complement(3629708..3630751) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; L-asparaginase 3630751 1064551003480 IA1_17455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-asparaginase YP_008615233.1 3629708 R 1064551 CDS YP_008615234.1 549480908 complement(3630810..3632129) 1 NC_022525.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter 3632129 1064551003481 IA1_17460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 C4-dicarboxylate ABC transporter YP_008615234.1 3630810 R 1064551 CDS YP_008615235.1 549482287 complement(3632183..3633028) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; carbohydrate kinase 3633028 1064551003482 IA1_17465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbohydrate kinase YP_008615235.1 3632183 R 1064551 CDS YP_008615236.1 549480909 complement(3633092..3634066) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphosugar isomerase 3634066 1064551003483 IA1_17470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphosugar isomerase YP_008615236.1 3633092 R 1064551 CDS YP_008615237.1 549480910 complement(3634245..3634964) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 3634964 1064551003484 IA1_17475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GntR family transcriptional regulator YP_008615237.1 3634245 R 1064551 CDS YP_008615238.1 549480911 3635290..3636939 1 NC_022525.1 cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalase 3636939 treF 1064551003485 treF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 trehalase YP_008615238.1 3635290 D 1064551 CDS YP_008615239.1 549480912 complement(3636952..3638541) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3638541 1064551003486 IA1_17485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615239.1 3636952 R 1064551 CDS YP_008615240.1 549480913 3638822..3639178 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; endolysin 3639178 1064551003487 IA1_17490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endolysin YP_008615240.1 3638822 D 1064551 CDS YP_008615241.1 549480914 complement(3639184..3639786) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LuxR family transcriptional regulator 3639786 1064551003488 IA1_17495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LuxR family transcriptional regulator YP_008615241.1 3639184 R 1064551 CDS YP_008615242.1 549480915 3640414..3641316 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 3641316 1064551003489 IA1_17500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcripitonal regulator YP_008615242.1 3640414 D 1064551 CDS YP_008615243.1 549480916 3641389..3642417 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3642417 1064551003490 IA1_17505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615243.1 3641389 D 1064551 CDS YP_008615244.1 549480917 3642768..3644090 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3644090 1064551003491 IA1_17510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008615244.1 3642768 D 1064551 CDS YP_008615245.1 549480918 complement(3644130..3646190) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3646190 1064551003492 IA1_17515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615245.1 3644130 R 1064551 CDS YP_008615246.1 549480919 complement(3646300..3647067) 1 NC_022525.1 in Escherichia coli this protein is involved in flagellar function; Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase 3647067 1064551003493 IA1_17520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cyclic di-GMP phosphodiesterase YP_008615246.1 3646300 R 1064551 CDS YP_008615247.1 549480920 3647296..3648225 1 NC_022525.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate-6-phosphate from 2-dehydro-3-deoxy-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ketodeoxygluconokinase 3648225 1064551003494 IA1_17525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ketodeoxygluconokinase YP_008615247.1 3647296 D 1064551 CDS YP_008615248.1 549480921 complement(3648279..3649766) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3649766 1064551003495 IA1_17530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615248.1 3648279 R 1064551 CDS YP_008615249.1 549480922 complement(3649986..3651272) 1 NC_022525.1 involved in the transport of C4-dicarboxylates across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter 3651272 1064551003496 IA1_17535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 C4-dicarboxylate ABC transporter YP_008615249.1 3649986 R 1064551 CDS YP_008615250.1 549482288 complement(3651430..3653436) 1 NC_022525.1 HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; biofilm formation regulator HmsP 3653436 1064551003497 IA1_17540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 biofilm formation regulator HmsP YP_008615250.1 3651430 R 1064551 CDS YP_008615251.1 549480923 complement(3653610..3657152) 1 NC_022525.1 cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; Derived by automated computational analysis using gene prediction method: Protein Homology.; cellulose synthase subunit BcsC 3657152 1064551003498 IA1_17545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cellulose synthase subunit BcsC YP_008615251.1 3653610 R 1064551 CDS YP_008615252.1 549480924 complement(3657134..3658243) 1 NC_022525.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease III 3658243 1064551003499 IA1_17550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endonuclease III YP_008615252.1 3657134 R 1064551 CDS YP_008615253.1 549480925 complement(3658247..3660547) 1 NC_022525.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP regulator CdgR 3660547 1064551003500 IA1_17555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cyclic di-GMP regulator CdgR YP_008615253.1 3658247 R 1064551 CDS YP_008615254.1 549480926 complement(3660558..3663182) 1 NC_022525.1 polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cellulose synthase catalytic subunit 3663182 bcsA 1064551003501 bcsA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cellulose synthase catalytic subunit YP_008615254.1 3660558 R 1064551 CDS YP_008615255.1 549480927 complement(3663179..3663931) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein 3663931 1064551003502 IA1_17565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein YP_008615255.1 3663179 R 1064551 CDS YP_008615256.1 549482289 complement(3663932..3664135) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3664135 1064551003503 IA1_17570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615256.1 3663932 R 1064551 CDS YP_008615257.1 549482290 3664392..3665951 1 NC_022525.1 required for cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cellulose biosynthesis protein BcsE 3665951 1064551003504 IA1_17575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cellulose biosynthesis protein BcsE YP_008615257.1 3664392 D 1064551 CDS YP_008615258.1 549482291 3665948..3666139 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3666139 1064551003505 IA1_17580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615258.1 3665948 D 1064551 CDS YP_008615259.1 549482292 3666136..3667815 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3667815 1064551003506 IA1_17585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615259.1 3666136 D 1064551 CDS YP_008615260.1 549482293 complement(3667897..3668004) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3668004 1064551003507 IA1_17590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615260.1 3667897 R 1064551 CDS YP_008615261.1 549480928 3668648..3669946 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3669946 1064551003508 IA1_17595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008615261.1 3668648 D 1064551 CDS YP_008615262.1 549480929 complement(3672051..3672953) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter 3672953 1064551003510 IA1_17605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter YP_008615262.1 3672051 R 1064551 CDS YP_008615263.1 549480930 complement(3672963..3673982) 1 NC_022525.1 transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 3673982 1064551003511 IA1_17610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter permease YP_008615263.1 3672963 R 1064551 CDS YP_008615264.1 549480931 complement(3674139..3675746) 1 NC_022525.1 DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein 3675746 1064551003512 IA1_17615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter substrate-binding protein YP_008615264.1 3674139 R 1064551 CDS YP_008615265.1 549482294 complement(3676302..3677627) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; nucleobase:cation symporter 3677627 1064551003513 IA1_17620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nucleobase:cation symporter YP_008615265.1 3676302 R 1064551 CDS YP_008615266.1 549480932 complement(3677685..3678809) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3678809 1064551003514 IA1_17625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615266.1 3677685 R 1064551 CDS YP_008615267.1 549480933 3678959..3679966 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family transcriptional regulator 3679966 1064551003515 IA1_17630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LacI family transcriptional regulator YP_008615267.1 3678959 D 1064551 CDS YP_008615268.1 549480934 complement(3680277..3681968) 1 NC_022525.1 catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoethanolamine transferase 3681968 1064551003517 IA1_17640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoethanolamine transferase YP_008615268.1 3680277 R 1064551 CDS YP_008615269.1 549480935 complement(3682186..3682713) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; long polar fimbrial protein LpfE 3682713 1064551003518 IA1_17645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 long polar fimbrial protein LpfE YP_008615269.1 3682186 R 1064551 CDS YP_008615270.1 549482295 complement(3682719..3683798) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; long polar fimbrial protein LpfD 3683798 1064551003519 IA1_17650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 long polar fimbrial protein LpfD YP_008615270.1 3682719 R 1064551 CDS YP_008615271.1 549480936 complement(3683816..3686344) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial outer membrane usher protein SthC 3686344 1064551003520 IA1_17655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial outer membrane usher protein SthC YP_008615271.1 3683816 R 1064551 CDS YP_008615272.1 549480937 complement(3686367..3687065) 1 NC_022525.1 involved in type 1 fimbriae biosynthesis, interacts with FimH; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone protein FimC 3687065 1064551003521 IA1_17660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial chaperone protein FimC YP_008615272.1 3686367 R 1064551 CDS YP_008615273.1 549480938 complement(3687150..3687674) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; type-1 fimbrial protein subunit A 3687674 fimA 1064551003522 fimA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type-1 fimbrial protein subunit A YP_008615273.1 3687150 R 1064551 CDS YP_008615274.1 549482296 complement(3688034..3688138) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3688138 1064551003523 IA1_17670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615274.1 3688034 R 1064551 CDS YP_008615275.1 549480939 complement(3688192..3688896) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3688896 1064551003524 IA1_17675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615275.1 3688192 R 1064551 CDS YP_008615276.1 549480940 3689053..3689634 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-3-methyladenine glycosylase 3689634 1064551003525 IA1_17680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-3-methyladenine glycosylase YP_008615276.1 3689053 D 1064551 CDS YP_008615277.1 549482297 3689612..3690052 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acetyltransferase 3690052 1064551003526 IA1_17685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetyltransferase YP_008615277.1 3689612 D 1064551 CDS YP_008615278.1 549480941 complement(3690021..3692354) 1 NC_022525.1 catalyzes the formation of biotin from biotin sulfoxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin sulfoxide reductase 3692354 bisC 1064551003527 bisC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 biotin sulfoxide reductase YP_008615278.1 3690021 R 1064551 CDS YP_008615279.1 549480942 3692507..3693169 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein 3693169 1064551003528 IA1_17695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane lipoprotein YP_008615279.1 3692507 D 1064551 CDS YP_008615280.1 549480943 3693388..3694362 1 NC_022525.1 catalyzes the formation of glycolate from glyoxylate and glycerate from hydroxypyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glyoxylate/hydroxypyruvate reductase B 3694362 1064551003529 IA1_17700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional glyoxylate/hydroxypyruvate reductase B YP_008615280.1 3693388 D 1064551 CDS YP_008615281.1 549480944 complement(3694412..3695122) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3695122 1064551003530 IA1_17705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615281.1 3694412 R 1064551 CDS YP_008615282.1 549480945 3695561..3695851 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3695851 1064551003531 IA1_17710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615282.1 3695561 D 1064551 CDS YP_008615283.1 549480946 3696139..3696351 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein 3696351 1064551003532 IA1_17715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cold-shock protein YP_008615283.1 3696139 D 1064551 CDS YP_008615284.1 549480947 3696524..3697063 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3697063 1064551003533 IA1_17720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615284.1 3696524 D 1064551 CDS YP_008615285.1 549482298 complement(3697437..3697922) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; N-acetyltransferase GCN5 3697922 1064551003534 IA1_17725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetyltransferase GCN5 YP_008615285.1 3697437 R 1064551 CDS YP_008615286.1 549480948 complement(3697910..3698197) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3698197 1064551003535 IA1_17730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615286.1 3697910 R 1064551 CDS YP_008615287.1 549482299 complement(3698375..3698842) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acetyltransferase 3698842 1064551003536 IA1_17735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetyltransferase YP_008615287.1 3698375 R 1064551 CDS YP_008615288.1 549482300 complement(3699248..3699487) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3699487 1064551003537 IA1_17740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615288.1 3699248 R 1064551 CDS YP_008615289.1 549480949 complement(3699802..3701871) 1 NC_022525.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycyl-tRNA synthetase 3701871 glyS 1064551003538 glyS Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycyl-tRNA synthetase YP_008615289.1 3699802 R 1064551 CDS YP_008615290.1 549482301 complement(3701881..3702792) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycyl-tRNA synthetase 3702792 1064551003539 IA1_17750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycyl-tRNA synthetase YP_008615290.1 3701881 R 1064551 CDS YP_008615291.1 549482302 complement(3702931..3703233) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3703233 1064551003540 IA1_17755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615291.1 3702931 R 1064551 CDS YP_008615292.1 549480950 3703399..3704394 1 NC_022525.1 involved in enterobacterial common antigen biosynthesis; catalyzes the addition of O-acetyl groups to the N-acetyl-D-glucosamine residues of the trisaccharide repeat units of the enterobacterial common antigen; Derived by automated computational analysis using gene prediction method: Protein Homology.; O-acetyltransferase 3704394 1064551003541 IA1_17760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 O-acetyltransferase YP_008615292.1 3703399 D 1064551 CDS YP_008615293.1 549482303 complement(3704417..3704770) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3704770 1064551003542 IA1_17765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615293.1 3704417 R 1064551 CDS YP_008615294.1 549480951 complement(3704945..3706399) 1 NC_022525.1 catalyzes the formation of D-xylulose-5-phosphate fro D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology.; xylulokinase 3706399 1064551003543 IA1_17770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 xylulokinase YP_008615294.1 3704945 R 1064551 CDS YP_008615295.1 549480952 complement(3706499..3707821) 1 NC_022525.1 catalyzes the interconversion of D-xylose to D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology.; xylose isomerase 3707821 1064551003544 IA1_17775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 xylose isomerase YP_008615295.1 3706499 R 1064551 CDS YP_008615296.1 549482304 3708184..3709362 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 3709362 1064551003545 IA1_17780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615296.1 3708184 D 1064551 CDS YP_008615297.1 549482305 complement(3709423..3709995) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 3709995 1064551003546 IA1_17785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase YP_008615297.1 3709423 R 1064551 CDS YP_008615298.1 549482306 3710192..3710563 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3710563 1064551003547 IA1_17790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615298.1 3710192 D 1064551 CDS YP_008615299.1 549480953 3710563..3712590 1 NC_022525.1 periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-amylase 3712590 malS 1064551003548 malS Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alpha-amylase YP_008615299.1 3710563 D 1064551 CDS YP_008615300.1 549480954 3712764..3714014 1 NC_022525.1 transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; valine--pyruvate aminotransferase 3714014 avtA 1064551003549 avtA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 valine--pyruvate aminotransferase YP_008615300.1 3712764 D 1064551 CDS YP_008615301.1 549480955 complement(3714051..3714524) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter 3714524 1064551003550 IA1_17805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 electron transporter YP_008615301.1 3714051 R 1064551 CDS YP_008615302.1 549480956 complement(3714641..3715441) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3715441 1064551003551 IA1_17810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615302.1 3714641 R 1064551 CDS YP_008615303.1 549482307 3715671..3716669 1 NC_022525.1 NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 2,3-diketo-L-gulonate reductase 3716669 1064551003552 IA1_17815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2,3-diketo-L-gulonate reductase YP_008615303.1 3715671 D 1064551 CDS YP_008615304.1 549480957 3716681..3717145 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3717145 1064551003553 IA1_17820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615304.1 3716681 D 1064551 CDS YP_008615305.1 549480958 3717169..3718110 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3718110 1064551003554 IA1_17825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615305.1 3717169 D 1064551 CDS YP_008615306.1 549480959 3718239..3718712 1 NC_022525.1 membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3-diketo-L-gulonate TRAP transporter permease 3718712 1064551003555 IA1_17830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2,3-diketo-L-gulonate TRAP transporter permease YP_008615306.1 3718239 D 1064551 CDS YP_008615307.1 549480960 3718715..3719992 1 NC_022525.1 TRAP family transporter; with YiaMO is involved in the uptake of L-dehydroascorbate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dehydroascorbate transporter 3719992 1064551003556 IA1_17835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dehydroascorbate transporter YP_008615307.1 3718715 D 1064551 CDS YP_008615308.1 549480961 3720004..3720990 1 NC_022525.1 involved in the transport of 2,3-diketo-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter substrate-binding protein 3720990 1064551003557 IA1_17840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 C4-dicarboxylate ABC transporter substrate-binding protein YP_008615308.1 3720004 D 1064551 CDS YP_008615309.1 549480962 3720994..3722490 1 NC_022525.1 catalyzes the formation of L-xylulose 5-phosphate and 3-dehydro-L-gulonate 6-phosphate from L-xylulose or 3-dehydro-L-gulonate, respectively; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-xylulose/3-keto-L-gulonate kinase 3722490 1064551003558 IA1_17845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-xylulose/3-keto-L-gulonate kinase YP_008615309.1 3720994 D 1064551 CDS YP_008615310.1 549480963 3722487..3723149 1 NC_022525.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-keto-L-gulonate-6-phosphate decarboxylase 3723149 ulaD 1064551003559 ulaD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-keto-L-gulonate-6-phosphate decarboxylase YP_008615310.1 3722487 D 1064551 CDS YP_008615311.1 549482308 3723142..3724002 1 NC_022525.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; L-xylulose 5-phosphate 3-epimerase 3724002 1064551003560 IA1_17855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-xylulose 5-phosphate 3-epimerase YP_008615311.1 3723142 D 1064551 CDS YP_008615312.1 549480964 3723996..3724691 1 NC_022525.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ribulose-5-phosphate 4-epimerase 3724691 araD 1064551003561 araD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-ribulose-5-phosphate 4-epimerase YP_008615312.1 3723996 D 1064551 CDS YP_008615313.1 549480965 complement(3724852..3725667) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3725667 1064551003562 IA1_17865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615313.1 3724852 R 1064551 CDS YP_008615314.1 549480966 3725931..3727886 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl hydrolase 3727886 1064551003563 IA1_17870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycosyl hydrolase YP_008615314.1 3725931 D 1064551 CDS YP_008615315.1 549480967 complement(3728060..3729598) 1 NC_022525.1 catalyzes the oxidation of acetaldehyde, benzaldehyde, propionaldehyde and other aldehydes; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase 3729598 1064551003564 IA1_17875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aldehyde dehydrogenase YP_008615315.1 3728060 R 1064551 CDS YP_008615316.1 549480968 3729767..3730648 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar kinase 3730648 1064551003565 IA1_17880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar kinase YP_008615316.1 3729767 D 1064551 CDS YP_008615317.1 549480969 complement(3730897..3732747) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; translation elongation factor 3732747 1064551003566 IA1_17885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 translation elongation factor YP_008615317.1 3730897 R 1064551 CDS YP_008615318.1 549480970 complement(3732744..3734135) 1 NC_022525.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; selenocysteine synthase 3734135 1064551003567 IA1_17890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 selenocysteine synthase YP_008615318.1 3732744 R 1064551 CDS YP_008615319.1 549480971 complement(3734234..3734842) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase 3734842 1064551003568 IA1_17895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathione S-transferase YP_008615319.1 3734234 R 1064551 CDS YP_008615320.1 549482309 complement(3734940..3736076) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3736076 1064551003569 IA1_17900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615320.1 3734940 R 1064551 CDS YP_008615321.1 549482310 complement(3736079..3736441) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3736441 1064551003570 IA1_17905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615321.1 3736079 R 1064551 CDS YP_008615322.1 549482311 3736975..3738891 1 NC_022525.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; subunit IIC forms the translocation channel and contains the specific substrate-binding site; subunit IIA is phosphorylated and transfers the phosphoryl group to the IIB subunit; subunit IIB transfers the phosphoryl group to the substrate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS mannitol transporter subunit IIABC 3738891 1064551003571 IA1_17910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS mannitol transporter subunit IIABC YP_008615322.1 3736975 D 1064551 CDS YP_008615323.1 549480972 3739112..3740260 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; mannitol-1-phosphate 5-dehydrogenase 3740260 1064551003572 IA1_17915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 mannitol-1-phosphate 5-dehydrogenase YP_008615323.1 3739112 D 1064551 CDS YP_008615324.1 549480973 3740257..3740847 1 NC_022525.1 Acts as a repressor of the mtlAD operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannitol repressor protein 3740847 mtlR 1064551003573 mtlR Salmonella enterica subsp. enterica serovar Thompson str. RM6836 mannitol repressor protein YP_008615324.1 3740257 D 1064551 CDS YP_008615325.1 549480974 complement(3740857..3741066) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3741066 1064551003574 IA1_17925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615325.1 3740857 R 1064551 CDS YP_008615326.1 549480975 3741357..3741719 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3741719 1064551003575 IA1_17930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615326.1 3741357 D 1064551 CDS YP_008615327.1 549480976 3742207..3742890 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3742890 1064551003576 IA1_17935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615327.1 3742207 D 1064551 CDS YP_008615328.1 549480977 3747029..3748684 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; L-lactate permease 3748684 1064551003578 IA1_17945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-lactate permease YP_008615328.1 3747029 D 1064551 CDS YP_008615329.1 549480978 3748681..3749457 1 NC_022525.1 represses the lctPRD operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3749457 1064551003579 IA1_17950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615329.1 3748681 D 1064551 CDS YP_008615330.1 549480979 3749454..3750644 1 NC_022525.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-lactate dehydrogenase 3750644 lldD 1064551003580 lldD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-lactate dehydrogenase YP_008615330.1 3749454 D 1064551 CDS YP_008615331.1 549480980 3750708..3751181 1 NC_022525.1 member of the SPOUT superfamily of RNA methyltransferases; Derived by automated computational analysis using gene prediction method: Protein Homology.; rRNA methyltransferase 3751181 1064551003581 IA1_17960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 rRNA methyltransferase YP_008615331.1 3750708 D 1064551 CDS YP_008615332.1 549480981 complement(3751249..3752301) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 3752301 1064551003582 IA1_17965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GntR family transcriptional regulator YP_008615332.1 3751249 R 1064551 CDS YP_008615333.1 549480982 3752572..3753768 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MdlA 3753768 1064551003583 IA1_17970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MdlA YP_008615333.1 3752572 D 1064551 CDS YP_008615334.1 549480983 3753842..3755152 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate transporter 3755152 1064551003584 IA1_17975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucarate transporter YP_008615334.1 3753842 D 1064551 CDS YP_008615335.1 549480984 complement(3755235..3756056) 1 NC_022525.1 catalyzes the O-acetylation of serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine acetyltransferase 3756056 cysE 1064551003585 cysE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 serine acetyltransferase YP_008615335.1 3755235 R 1064551 CDS YP_008615336.1 549482312 complement(3756134..3757153) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3757153 1064551003586 IA1_17985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_008615336.1 3756134 R 1064551 CDS YP_008615337.1 549482313 complement(3757153..3757620) 1 NC_022525.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; preprotein translocase subunit SecB 3757620 1064551003587 IA1_17990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 preprotein translocase subunit SecB YP_008615337.1 3757153 R 1064551 CDS YP_008615338.1 549480985 complement(3757664..3757915) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin 3757915 1064551003588 IA1_17995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutaredoxin YP_008615338.1 3757664 R 1064551 CDS YP_008615339.1 549480986 complement(3758001..3758432) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3758432 1064551003589 IA1_18000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615339.1 3758001 R 1064551 CDS YP_008615340.1 549480987 3758680..3760224 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglyceromutase 3760224 1064551003590 IA1_18005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoglyceromutase YP_008615340.1 3758680 D 1064551 CDS YP_008615341.1 549480988 3760234..3761517 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M37 3761517 1064551003591 IA1_18010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidase M37 YP_008615341.1 3760234 D 1064551 CDS YP_008615342.1 549480989 3761521..3762483 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3762483 1064551003592 IA1_18015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615342.1 3761521 D 1064551 CDS YP_008615343.1 549480990 complement(3762470..3763504) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase 3763504 1064551003593 IA1_18020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycosyl transferase YP_008615343.1 3762470 R 1064551 CDS YP_008615344.1 549480991 complement(3763797..3764822) 1 NC_022525.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-threonine 3-dehydrogenase 3764822 tdh 1064551003594 tdh Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-threonine 3-dehydrogenase YP_008615344.1 3763797 R 1064551 CDS YP_008615345.1 549480992 complement(3764832..3766028) 1 NC_022525.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-amino-3-ketobutyrate CoA ligase 3766028 1064551003595 IA1_18030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-amino-3-ketobutyrate CoA ligase YP_008615345.1 3764832 R 1064551 CDS YP_008615346.1 549480993 3766231..3767163 1 NC_022525.1 catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-L-glycero-D-mannoheptose-6-epimerase 3767163 rfaD 1064551003596 rfaD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ADP-L-glycero-D-mannoheptose-6-epimerase YP_008615346.1 3766231 D 1064551 CDS YP_008615347.1 549482314 3767166..3768212 1 NC_022525.1 catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ADP-heptose:LPS heptosyl transferase 3768212 1064551003597 IA1_18040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ADP-heptose:LPS heptosyl transferase YP_008615347.1 3767166 D 1064551 CDS YP_008615348.1 549480994 3768212..3769165 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-heptose:LPS heptosyl transferase 3769165 1064551003598 IA1_18045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ADP-heptose:LPS heptosyl transferase YP_008615348.1 3768212 D 1064551 CDS YP_008615349.1 549480995 3769205..3770419 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ligase 3770419 1064551003599 IA1_18050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ligase YP_008615349.1 3769205 D 1064551 CDS YP_008615350.1 549480996 complement(3770476..3771621) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide 1,2-N-acetylglucosaminetransferase 3771621 1064551003600 IA1_18055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipopolysaccharide 1,2-N-acetylglucosaminetransferase YP_008615350.1 3770476 R 1064551 CDS YP_008615351.1 549480997 complement(3771721..3772530) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core biosynthesis protein 3772530 1064551003601 IA1_18060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipopolysaccharide core biosynthesis protein YP_008615351.1 3771721 R 1064551 CDS YP_008615352.1 549482315 complement(3772680..3773378) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3773378 1064551003602 IA1_18065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615352.1 3772680 R 1064551 CDS YP_008615353.1 549480998 complement(3773401..3774414) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide 1,2-glucosyltransferase 3774414 1064551003603 IA1_18070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipopolysaccharide 1,2-glucosyltransferase YP_008615353.1 3773401 R 1064551 CDS YP_008615354.1 549480999 complement(3774432..3775445) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide 1,3-galactosyltransferase 3775445 1064551003604 IA1_18075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipopolysaccharide 1,3-galactosyltransferase YP_008615354.1 3774432 R 1064551 CDS YP_008615355.1 549481000 complement(3775451..3776530) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase 3776530 1064551003605 IA1_18080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase YP_008615355.1 3775451 R 1064551 CDS YP_008615356.1 549482316 complement(3776600..3776809) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3776809 1064551003606 IA1_18085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615356.1 3776600 R 1064551 CDS YP_008615357.1 549481001 complement(3776865..3777662) 1 NC_022525.1 catalyzes the phosphorylation of heptose I in the lipopolysaccharide core; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core heptose(I) kinase RfaP 3777662 1064551003607 IA1_18090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipopolysaccharide core heptose(I) kinase RfaP YP_008615357.1 3776865 R 1064551 CDS YP_008615358.1 549481002 complement(3777655..3778779) 1 NC_022525.1 catalyzes the addition of the first glucose residue to the LPS core; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosyltransferase 3778779 1064551003608 IA1_18095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucosyltransferase YP_008615358.1 3777655 R 1064551 CDS YP_008615359.1 549481003 complement(3778776..3779810) 1 NC_022525.1 catalyzes the transfer of heptose(III) to heptose(II) in the lipopolysaccharide inner core; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core heptosyltransferase RfaQ 3779810 1064551003609 IA1_18100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipopolysaccharide core heptosyltransferase RfaQ YP_008615359.1 3778776 R 1064551 CDS YP_008615360.1 549481004 3780255..3781532 1 NC_022525.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-D-manno-octulosonic acid transferase 3781532 1064551003610 IA1_18105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-deoxy-D-manno-octulosonic acid transferase YP_008615360.1 3780255 D 1064551 CDS YP_008615361.1 549481005 3781541..3782020 1 NC_022525.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopantetheine adenylyltransferase 3782020 coaD 1064551003611 coaD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphopantetheine adenylyltransferase YP_008615361.1 3781541 D 1064551 CDS YP_008615362.1 549481006 complement(3782048..3782857) 1 NC_022525.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-hydroxymethyluracil DNA glycosylase 3782857 1064551003612 IA1_18115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5-hydroxymethyluracil DNA glycosylase YP_008615362.1 3782048 R 1064551 CDS YP_008615363.1 549481007 complement(3782955..3783122) 1 NC_022525.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L33 3783122 rpmG 1064551003613 rpmG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L33 YP_008615363.1 3782955 R 1064551 CDS YP_008615364.1 549482317 complement(3783143..3783343) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 50S ribosomal protein L28 3783343 1064551003614 IA1_18125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L28 YP_008615364.1 3783143 R 1064551 CDS YP_008615365.1 549481008 complement(3783597..3784262) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3784262 1064551003615 IA1_18130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615365.1 3783597 R 1064551 CDS YP_008615366.1 549481009 3784438..3785658 1 NC_022525.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopantothenoylcysteine decarboxylase 3785658 1064551003616 IA1_18135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphopantothenoylcysteine decarboxylase YP_008615366.1 3784438 D 1064551 CDS YP_008615367.1 549481010 3785636..3786094 1 NC_022525.1 catalyzes the formation of dUMP from dUTP; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyuridine 5'-triphosphate nucleotidohydrolase 3786094 1064551003617 IA1_18140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_008615367.1 3785636 D 1064551 CDS YP_008615368.1 549481011 3786202..3786798 1 NC_022525.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; division inhibitor protein 3786798 slmA 1064551003618 slmA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 division inhibitor protein YP_008615368.1 3786202 D 1064551 CDS YP_008615369.1 549481012 complement(3786876..3787517) 1 NC_022525.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; orotate phosphoribosyltransferase 3787517 pyrE 1064551003619 pyrE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 orotate phosphoribosyltransferase YP_008615369.1 3786876 R 1064551 CDS YP_008615370.1 549481013 complement(3787596..3788312) 1 NC_022525.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease PH 3788312 rph 1064551003620 rph Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonuclease PH YP_008615370.1 3787596 R 1064551 CDS YP_008615371.1 549481014 3788438..3789301 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3789301 1064551003621 IA1_18160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615371.1 3788438 D 1064551 CDS YP_008615372.1 549481015 complement(3789351..3790253) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 3790253 1064551003622 IA1_18165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 regulatory protein YP_008615372.1 3789351 R 1064551 CDS YP_008615373.1 549481016 3790327..3791208 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Zn-dependent hydrolase 3791208 1064551003623 IA1_18170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Zn-dependent hydrolase YP_008615373.1 3790327 D 1064551 CDS YP_008615374.1 549481017 3791459..3792076 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3792076 1064551003624 IA1_18175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615374.1 3791459 D 1064551 CDS YP_008615375.1 549481018 complement(3792073..3793758) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA ligase 3793758 1064551003625 IA1_18180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA ligase YP_008615375.1 3792073 R 1064551 CDS YP_008615376.1 549481019 3794015..3794638 1 NC_022525.1 Essential for recycling GMP and indirectly, cGMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; guanylate kinase 3794638 gmk 1064551003626 gmk Salmonella enterica subsp. enterica serovar Thompson str. RM6836 guanylate kinase YP_008615376.1 3794015 D 1064551 CDS YP_008615377.1 549481020 3794693..3794968 1 NC_022525.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit omega 3794968 rpoZ 1064551003627 rpoZ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-directed RNA polymerase subunit omega YP_008615377.1 3794693 D 1064551 CDS YP_008615378.1 549482318 3794987..3797098 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3797098 1064551003628 IA1_18195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_008615378.1 3794987 D 1064551 CDS YP_008615379.1 549481021 3797103..3797792 1 NC_022525.1 specifically modifies tRNA at position G18; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA methyltransferase 3797792 1064551003629 IA1_18200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA methyltransferase YP_008615379.1 3797103 D 1064551 CDS YP_008615380.1 549481022 3797798..3799879 1 NC_022525.1 catalyzes branch migration in Holliday junction intermediates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase RecG 3799879 1064551003630 IA1_18205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-dependent DNA helicase RecG YP_008615380.1 3797798 D 1064551 CDS YP_008615381.1 549481023 complement(3799915..3801120) 1 NC_022525.1 is involved with the sodium-dependent uptake of glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium/glutamate symport carrier protein GltS 3801120 1064551003631 IA1_18210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sodium/glutamate symport carrier protein GltS YP_008615381.1 3799915 R 1064551 CDS YP_008615382.1 549481024 3801348..3802739 1 NC_022525.1 high-affinity transporter for xanthine; Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine permease 3802739 1064551003632 IA1_18215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 xanthine permease YP_008615382.1 3801348 D 1064551 CDS YP_008615383.1 549481025 3802860..3804569 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3804569 1064551003633 IA1_18220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615383.1 3802860 D 1064551 CDS YP_008615384.1 549481026 complement(3804672..3806990) 1 NC_022525.1 catalyzes the transfer of alpha-xylosyl residue; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-glucosidase 3806990 1064551003634 IA1_18225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alpha-glucosidase YP_008615384.1 3804672 R 1064551 CDS YP_008615385.1 549481027 complement(3807002..3808384) 1 NC_022525.1 may be involved in the transport of galactosides-pentoses-hexuronides; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3808384 1064551003635 IA1_18230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008615385.1 3807002 R 1064551 CDS YP_008615386.1 549481028 3810389..3811006 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; RmbA 3811006 1064551003637 IA1_18240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RmbA YP_008615386.1 3810389 D 1064551 CDS YP_008615387.1 549481029 3811081..3813933 1 NC_022525.1 binds fibronectin; adhesin involved in intestinal colonization; Derived by automated computational analysis using gene prediction method: Protein Homology.; autotransporter MisL 3813933 1064551003638 IA1_18245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 autotransporter MisL YP_008615387.1 3811081 D 1064551 CDS YP_008615388.1 549481030 complement(3814028..3814510) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3814510 1064551003639 IA1_18250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615388.1 3814028 R 1064551 CDS YP_008615389.1 549481031 complement(3814503..3815291) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3815291 1064551003640 IA1_18255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615389.1 3814503 R 1064551 CDS YP_008615390.1 549481032 3816144..3816824 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinamidase 3816824 1064551003641 IA1_18260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nicotinamidase YP_008615390.1 3816144 D 1064551 CDS YP_008615391.1 549481033 complement(3817053..3817532) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3817532 1064551003642 IA1_18265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615391.1 3817053 R 1064551 CDS YP_008615392.1 549482319 complement(3817733..3817825) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3817825 1064551003643 IA1_18270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615392.1 3817733 R 1064551 CDS YP_008615393.1 549481034 complement(3817847..3820573) 1 NC_022525.1 P-type; involved in magnesium transport into the cytoplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium-transporting ATPase 3820573 1064551003644 IA1_18275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 magnesium-transporting ATPase YP_008615393.1 3817847 R 1064551 CDS YP_008615394.1 549481035 complement(3820793..3821488) 1 NC_022525.1 may activate Na/K-ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium transporter 3821488 1064551003645 IA1_18280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 magnesium transporter YP_008615394.1 3820793 R 1064551 CDS YP_008615395.1 549481036 3821949..3822896 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3822896 1064551003646 IA1_18285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615395.1 3821949 D 1064551 CDS YP_008615396.1 549481037 complement(3822939..3823880) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3823880 1064551003647 IA1_18290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615396.1 3822939 R 1064551 CDS YP_008615397.1 549481038 complement(3824116..3824859) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-2-ketovalerate aldolase 3824859 1064551003648 IA1_18295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-hydroxy-2-ketovalerate aldolase YP_008615397.1 3824116 R 1064551 CDS YP_008615398.1 549481039 complement(3824846..3825955) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; L-seryl-tRNA selenium transferase 3825955 1064551003649 IA1_18300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-seryl-tRNA selenium transferase YP_008615398.1 3824846 R 1064551 CDS YP_008615399.1 549481040 complement(3825959..3826816) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IID 3826816 1064551003650 IA1_18305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS fructose transporter subunit IID YP_008615399.1 3825959 R 1064551 CDS YP_008615400.1 549481041 complement(3826816..3827565) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sorbose transporter subunit IIC 3827565 1064551003651 IA1_18310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sorbose transporter subunit IIC YP_008615400.1 3826816 R 1064551 CDS YP_008615401.1 549481042 complement(3827711..3828196) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter 3828196 1064551003652 IA1_18315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sugar transporter YP_008615401.1 3827711 R 1064551 CDS YP_008615402.1 549481043 complement(3828207..3828632) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIA 3828632 1064551003653 IA1_18320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS fructose transporter subunit IIA YP_008615402.1 3828207 R 1064551 CDS YP_008615403.1 549481044 complement(3828851..3831649) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3831649 1064551003654 IA1_18325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615403.1 3828851 R 1064551 CDS YP_008615404.1 549481045 3831846..3832139 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3832139 1064551003655 IA1_18330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615404.1 3831846 D 1064551 CDS YP_008615405.1 549481046 3832245..3833627 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phospho-beta-glucosidase 3833627 1064551003656 IA1_18335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 6-phospho-beta-glucosidase YP_008615405.1 3832245 D 1064551 CDS YP_008615406.1 549482320 complement(3833687..3834880) 1 NC_022525.1 experimental results in Escherichia coli suggest that this gene encodes an inosine export protein; member of major facilitator superfamily; MFS; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ribonucleoside transporter 3834880 nepI 1064551003657 nepI Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonucleoside transporter YP_008615406.1 3833687 R 1064551 CDS YP_008615407.1 549481047 3835096..3835455 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; RelE family toxin-antitoxin system 3835455 1064551003658 IA1_18345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RelE family toxin-antitoxin system YP_008615407.1 3835096 D 1064551 CDS YP_008615408.1 549482321 3835439..3835762 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA-binding protein 3835762 1064551003659 IA1_18350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-binding protein YP_008615408.1 3835439 D 1064551 CDS YP_008615409.1 549482322 3835947..3836726 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3836726 1064551003660 IA1_18355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615409.1 3835947 D 1064551 CDS YP_008615410.1 549482323 complement(3836754..3836969) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3836969 1064551003661 IA1_18360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615410.1 3836754 R 1064551 CDS YP_008615411.1 549481048 complement(3837077..3837346) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter 3837346 1064551003662 IA1_18365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sugar transporter YP_008615411.1 3837077 R 1064551 CDS YP_008615412.1 549481049 complement(3837356..3838216) 1 NC_022525.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase 3838216 gatY 1064551003663 gatY Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fructose-bisphosphate aldolase YP_008615412.1 3837356 R 1064551 CDS YP_008615413.1 549481050 complement(3838279..3839763) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; carbohydrate kinase 3839763 1064551003664 IA1_18375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbohydrate kinase YP_008615413.1 3838279 R 1064551 CDS YP_008615414.1 549481051 complement(3839756..3841114) 1 NC_022525.1 with GatAB forms a phosphoenolpyruvate-dependent sugar phosphotransferase transporter for galactitol; subunit IIC forms the translocation channel and contains the substrate binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS galactitol transporter subunit IIC 3841114 gatC 1064551003665 gatC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS galactitol transporter subunit IIC YP_008615414.1 3839756 R 1064551 CDS YP_008615415.1 549481052 complement(3841190..3841477) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIB 3841477 1064551003666 IA1_18385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sugar transporter subunit IIB YP_008615415.1 3841190 R 1064551 CDS YP_008615416.1 549482324 complement(3841474..3841947) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS suar transporter subunit IIA 3841947 1064551003667 IA1_18390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS suar transporter subunit IIA YP_008615416.1 3841474 R 1064551 CDS YP_008615417.1 549482325 complement(3841965..3842708) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3842708 1064551003668 IA1_18395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615417.1 3841965 R 1064551 CDS YP_008615418.1 549481053 complement(3843085..3843537) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3843537 1064551003669 IA1_18400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615418.1 3843085 R 1064551 CDS YP_008615419.1 549482326 3843536..3843625 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3843625 1064551003670 IA1_18405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615419.1 3843536 D 1064551 CDS YP_008615420.1 549481054 complement(3843730..3845121) 1 NC_022525.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter 3845121 uhpT 1064551003671 uhpT Salmonella enterica subsp. enterica serovar Thompson str. RM6836 antiporter YP_008615420.1 3843730 R 1064551 CDS YP_008615421.1 549481055 complement(3845264..3846592) 1 NC_022525.1 membrane protein regulates uhpT expression; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 3846592 1064551003672 IA1_18415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 regulatory protein YP_008615421.1 3845264 R 1064551 CDS YP_008615422.1 549481056 complement(3846602..3848104) 1 NC_022525.1 Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase 3848104 1064551003673 IA1_18420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensory histidine kinase YP_008615422.1 3846602 R 1064551 CDS YP_008615423.1 549481057 complement(3848104..3848694) 1 NC_022525.1 response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3848694 1064551003674 IA1_18425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615423.1 3848104 R 1064551 CDS YP_008615424.1 549481058 complement(3848769..3849782) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyribose mutarotase 3849782 1064551003675 IA1_18430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 deoxyribose mutarotase YP_008615424.1 3848769 R 1064551 CDS YP_008615425.1 549481059 complement(3849794..3851110) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar:proton symporter 3851110 1064551003676 IA1_18435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar:proton symporter YP_008615425.1 3849794 R 1064551 CDS YP_008615426.1 549481060 complement(3851141..3852061) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ribokinase 3852061 1064551003677 IA1_18440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribokinase YP_008615426.1 3851141 R 1064551 CDS YP_008615427.1 549481061 3852386..3853171 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3853171 1064551003678 IA1_18445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615427.1 3852386 D 1064551 CDS YP_008615428.1 549481062 complement(3853173..3853463) 1 NC_022525.1 with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 3853463 1064551003679 IA1_18450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetolactate synthase YP_008615428.1 3853173 R 1064551 CDS YP_008615429.1 549481063 complement(3853467..3855155) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 3855155 1064551003680 IA1_18455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetolactate synthase YP_008615429.1 3853467 R 1064551 CDS YP_008615430.1 549482327 3855994..3856083 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3856083 1064551003681 IA1_18460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615430.1 3855994 D 1064551 CDS YP_008615431.1 549481064 3856203..3857036 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3857036 1064551003682 IA1_18465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615431.1 3856203 D 1064551 CDS YP_008615432.1 549481065 3857239..3858423 1 NC_022525.1 multidrug efflux protein involved in adaptation to low energy shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein D 3858423 emrD 1064551003683 emrD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug resistance protein D YP_008615432.1 3857239 D 1064551 CDS YP_008615433.1 549482328 complement(3858350..3859435) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3859435 1064551003684 IA1_18475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615433.1 3858350 R 1064551 CDS YP_008615434.1 549481066 complement(3859499..3860437) 1 NC_022525.1 regulates the synthesis and expression of the dsdXA operon and dadA gene; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3860437 1064551003685 IA1_18480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615434.1 3859499 R 1064551 CDS YP_008615435.1 549481067 3860648..3861985 1 NC_022525.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 3861985 1064551003686 IA1_18485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 permease YP_008615435.1 3860648 D 1064551 CDS YP_008615436.1 549481068 3862003..3863325 1 NC_022525.1 catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-serine dehydratase 3863325 1064551003687 IA1_18490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-serine dehydratase YP_008615436.1 3862003 D 1064551 CDS YP_008615437.1 549481069 complement(3863407..3863937) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3863937 1064551003688 IA1_18495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615437.1 3863407 R 1064551 CDS YP_008615438.1 549482329 complement(3863934..3864296) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3864296 1064551003689 IA1_18500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615438.1 3863934 R 1064551 CDS YP_008615439.1 549482330 complement(3864286..3864633) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3864633 1064551003690 IA1_18505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615439.1 3864286 R 1064551 CDS YP_008615440.1 549482331 complement(3864653..3864787) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3864787 1064551003691 IA1_18510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615440.1 3864653 R 1064551 CDS YP_008615441.1 549482332 3864934..3865080 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3865080 1064551003692 IA1_18515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615441.1 3864934 D 1064551 CDS YP_008615442.1 549481070 complement(3865077..3866738) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3866738 1064551003693 IA1_18520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008615442.1 3865077 R 1064551 CDS YP_008615443.1 549481071 complement(3866927..3867361) 1 NC_022525.1 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock chaperone IbpB 3867361 1064551003694 IA1_18525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heat shock chaperone IbpB YP_008615443.1 3866927 R 1064551 CDS YP_008615444.1 549481072 complement(3867465..3867884) 1 NC_022525.1 with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein IbpA 3867884 1064551003695 IA1_18530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heat shock protein IbpA YP_008615444.1 3867465 R 1064551 CDS YP_008615445.1 549482333 3868230..3868520 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3868520 1064551003696 IA1_18535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615445.1 3868230 D 1064551 CDS YP_008615446.1 549481073 complement(3868522..3869748) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3869748 1064551003697 IA1_18540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615446.1 3868522 R 1064551 CDS YP_008615447.1 549481074 complement(3869870..3870913) 1 NC_022525.1 cytochrome c-type biogenesis protein; involved in the attachment of heme to cytochrome c; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme lyase subunit CcmH 3870913 1064551003698 IA1_18545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heme lyase subunit CcmH YP_008615447.1 3869870 R 1064551 CDS YP_008615448.1 549481075 complement(3870910..3871467) 1 NC_022525.1 cytochrome c-type biogenesis thioredoxin; involved in the reduction of disulfide bonds to allow heme bonding; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol:disulfide interchange protein 3871467 1064551003699 IA1_18550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiol:disulfide interchange protein YP_008615448.1 3870910 R 1064551 CDS YP_008615449.1 549481076 complement(3873393..3873872) 1 NC_022525.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C biogenesis protein 3873872 1064551003700 IA1_18555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome C biogenesis protein YP_008615449.1 3873393 R 1064551 CDS YP_008615450.1 549482334 complement(3873869..3874081) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3874081 1064551003701 IA1_18560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615450.1 3873869 R 1064551 CDS YP_008615451.1 549481077 complement(3874078..3874815) 1 NC_022525.1 with CcmABDE is involved in the transport of protoheme IX; CcmC is required for heme transfer to CcmE; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter permease 3874815 1064551003702 IA1_18565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heme ABC transporter permease YP_008615451.1 3874078 R 1064551 CDS YP_008615452.1 549481078 complement(3874867..3875526) 1 NC_022525.1 with CcmABCE is involved in the transport of protoheme IX; CcmB is required for the release of holoCcmE from CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter permease 3875526 1064551003703 IA1_18570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heme ABC transporter permease YP_008615452.1 3874867 R 1064551 CDS YP_008615453.1 549482335 complement(3875523..3876149) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cytochrome C biogenesis protein CcmA 3876149 1064551003704 IA1_18575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome C biogenesis protein CcmA YP_008615453.1 3875523 R 1064551 CDS YP_008615454.1 549481079 complement(3876146..3877546) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C peroxidase 3877546 1064551003705 IA1_18580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome C peroxidase YP_008615454.1 3876146 R 1064551 CDS YP_008615455.1 549481080 complement(3877736..3878368) 1 NC_022525.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone protein TorD 3878368 torD 1064551003706 torD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chaperone protein TorD YP_008615455.1 3877736 R 1064551 CDS YP_008615456.1 549481081 complement(3878361..3880913) 1 NC_022525.1 catalyzes the reduction of trimethylamine-N-oxide to form trimethylamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; trimethylamine N-oxide reductase I catalytic subunit 3880913 1064551003707 IA1_18590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 trimethylamine N-oxide reductase I catalytic subunit YP_008615456.1 3878361 R 1064551 CDS YP_008615457.1 549481082 complement(3880903..3882087) 1 NC_022525.1 with TorA forms the inducible trimethylamine N-oxide reductase which transfers electrons from menaquinones first to TorC then to TorA; Derived by automated computational analysis using gene prediction method: Protein Homology.; trimethylamine N-oxide reductase cytochrome C subunit 3882087 1064551003708 IA1_18595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 trimethylamine N-oxide reductase cytochrome C subunit YP_008615457.1 3880903 R 1064551 CDS YP_008615458.1 549481083 3882181..3882909 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheY 3882909 1064551003709 IA1_18600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chemotaxis protein CheY YP_008615458.1 3882181 D 1064551 CDS YP_008615459.1 549482336 complement(3882882..3883922) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; TMAO reductase 3883922 1064551003710 IA1_18605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 TMAO reductase YP_008615459.1 3882882 R 1064551 CDS YP_008615460.1 549481084 3884002..3886737 1 NC_022525.1 Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase 3886737 1064551003711 IA1_18610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensory histidine kinase YP_008615460.1 3884002 D 1064551 CDS YP_008615461.1 549481085 complement(3886763..3888061) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate transporter 3888061 1064551003712 IA1_18615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucarate transporter YP_008615461.1 3886763 R 1064551 CDS YP_008615462.1 549481086 complement(3888185..3889333) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate dehydratase 3889333 1064551003713 IA1_18620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 galactonate dehydratase YP_008615462.1 3888185 R 1064551 CDS YP_008615463.1 549482337 complement(3889330..3889947) 1 NC_022525.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 3889947 1064551003714 IA1_18625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-dehydro-3-deoxy-6-phosphogalactonate aldolase YP_008615463.1 3889330 R 1064551 CDS YP_008615464.1 549481087 complement(3889931..3890809) 1 NC_022525.1 catalyzes the formation of 2-dehydro-3-deoxy-D-galactonate 6-phosphate from 2-dehydro-3-deoxy-D-galactonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxo-3-deoxygalactonate kinase 3890809 1064551003715 IA1_18630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-oxo-3-deoxygalactonate kinase YP_008615464.1 3889931 R 1064551 CDS YP_008615465.1 549481088 complement(3890806..3891495) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate operon transcriptional repressor 3891495 1064551003716 IA1_18635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 galactonate operon transcriptional repressor YP_008615465.1 3890806 R 1064551 CDS YP_008615466.1 549481089 complement(3891756..3892601) 1 NC_022525.1 YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar phosphate phosphatase 3892601 1064551003717 IA1_18640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar phosphate phosphatase YP_008615466.1 3891756 R 1064551 CDS YP_008615467.1 549481090 3892908..3894170 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3894170 1064551003718 IA1_18645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615467.1 3892908 D 1064551 CDS YP_008615468.1 549481091 3894187..3895377 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MR-MLE family protein 3895377 1064551003719 IA1_18650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MR-MLE family protein YP_008615468.1 3894187 D 1064551 CDS YP_008615469.1 549481092 3895492..3896388 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 3896388 1064551003720 IA1_18655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LysR family transcriptional regulator YP_008615469.1 3895492 D 1064551 CDS YP_008615470.1 549481093 complement(3896407..3898821) 1 NC_022525.1 negatively supercoils closed circular double-stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase subunit B 3898821 gyrB 1064551003721 gyrB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA gyrase subunit B YP_008615470.1 3896407 R 1064551 CDS YP_008615471.1 549481094 complement(3898850..3899923) 1 NC_022525.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase F 3899923 recF 1064551003722 recF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 recombinase F YP_008615471.1 3898850 R 1064551 CDS YP_008615472.1 549481095 complement(3900071..3901171) 1 NC_022525.1 binds the polymerase to DNA and acts as a sliding clamp; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit beta 3901171 1064551003723 IA1_18670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA polymerase III subunit beta YP_008615472.1 3900071 R 1064551 CDS YP_008615473.1 549481096 complement(3901176..3902576) 1 NC_022525.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself; Derived by automated computational analysis using gene prediction method: Protein Homology.; chromosomal replication initiation protein 3902576 dnaA 1064551003724 dnaA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chromosomal replication initiation protein YP_008615473.1 3901176 R 1064551 CDS YP_008615474.1 549481097 3903394..3903753 1 NC_022525.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease P 3903753 rnpA 1064551003725 rnpA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonuclease P YP_008615474.1 3903394 D 1064551 CDS YP_008615475.1 549481098 3903977..3905623 1 NC_022525.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein insertase 3905623 1064551003726 IA1_18685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein insertase YP_008615475.1 3903977 D 1064551 CDS YP_008615476.1 549481099 3905725..3907128 1 NC_022525.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA modification GTPase TrmE 3907128 trmE 1064551003727 trmE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA modification GTPase TrmE YP_008615476.1 3905725 D 1064551 CDS YP_008615477.1 549481100 3907311..3908498 1 NC_022525.1 Confers resistance to chloramphenicol; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 3908498 1064551003728 IA1_18695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008615477.1 3907311 D 1064551 CDS YP_008615478.1 549481101 3908467..3909426 1 NC_022525.1 Involved in anaerobic NO protection; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3909426 1064551003729 IA1_18700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615478.1 3908467 D 1064551 CDS YP_008615479.1 549481102 3909584..3910339 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopantetheinyl transferase 3910339 1064551003730 IA1_18705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphopantetheinyl transferase YP_008615479.1 3909584 D 1064551 CDS YP_008615480.1 549481103 3910357..3910923 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3910923 1064551003731 IA1_18710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615480.1 3910357 D 1064551 CDS YP_008615481.1 549481104 complement(3910968..3912305) 1 NC_022525.1 involved in the transport or adenine; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine permease 3912305 1064551003732 IA1_18715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adenine permease YP_008615481.1 3910968 R 1064551 CDS YP_008615482.1 549481105 3912474..3913139 1 NC_022525.1 YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphogluconate phosphatase 3913139 1064551003733 IA1_18720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 6-phosphogluconate phosphatase YP_008615482.1 3912474 D 1064551 CDS YP_008615483.1 549481106 complement(3913234..3913959) 1 NC_022525.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3913959 1064551003734 IA1_18725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615483.1 3913234 R 1064551 CDS YP_008615484.1 549482338 complement(3913974..3914783) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphate ABC transporter ATP-binding protein 3914783 1064551003735 IA1_18730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphate ABC transporter ATP-binding protein YP_008615484.1 3913974 R 1064551 CDS YP_008615485.1 549481107 complement(3914834..3915724) 1 NC_022525.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate transporter permease subunit PtsA 3915724 pstA 1064551003736 pstA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphate transporter permease subunit PtsA YP_008615485.1 3914834 R 1064551 CDS YP_008615486.1 549481108 complement(3915724..3916683) 1 NC_022525.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate transporter permease subunit PstC 3916683 pstC 1064551003737 pstC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphate transporter permease subunit PstC YP_008615486.1 3915724 R 1064551 CDS YP_008615487.1 549481109 complement(3916819..3917859) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate ABC transporter substrate-binding protein 3917859 1064551003738 IA1_18745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphate ABC transporter substrate-binding protein YP_008615487.1 3916819 R 1064551 CDS YP_008615488.1 549481110 complement(3918025..3919398) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIBC 3919398 1064551003739 IA1_18750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS fructose transporter subunit IIBC YP_008615488.1 3918025 R 1064551 CDS YP_008615489.1 549481111 complement(3919447..3920265) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate 5-dehydrogenase 3920265 1064551003740 IA1_18755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 shikimate 5-dehydrogenase YP_008615489.1 3919447 R 1064551 CDS YP_008615490.1 549481112 3920360..3922117 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein 3922117 1064551003741 IA1_18760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide ABC transporter substrate-binding protein YP_008615490.1 3920360 D 1064551 CDS YP_008615491.1 549482339 complement(3922268..3924097) 1 NC_022525.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glucosamine--fructose-6-phosphate aminotransferase 3924097 1064551003742 IA1_18765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucosamine--fructose-6-phosphate aminotransferase YP_008615491.1 3922268 R 1064551 CDS YP_008615492.1 549481113 complement(3924286..3925656) 1 NC_022525.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 3925656 glmU 1064551003743 glmU Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_008615492.1 3924286 R 1064551 CDS YP_008615493.1 549481114 complement(3925976..3926674) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 3926674 1064551003744 IA1_18780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 permease YP_008615493.1 3925976 R 1064551 CDS YP_008615494.1 549481115 complement(3926903..3927322) 1 NC_022525.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit epsilon 3927322 atpC 1064551003745 atpC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 F0F1 ATP synthase subunit epsilon YP_008615494.1 3926903 R 1064551 CDS YP_008615495.1 549481116 complement(3927343..3928725) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit beta 3928725 1064551003746 IA1_18795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 F0F1 ATP synthase subunit beta YP_008615495.1 3927343 R 1064551 CDS YP_008615496.1 549481117 complement(3928752..3929615) 1 NC_022525.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit gamma 3929615 1064551003747 IA1_18800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 F0F1 ATP synthase subunit gamma YP_008615496.1 3928752 R 1064551 CDS YP_008615497.1 549481118 complement(3929666..3931207) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit alpha 3931207 1064551003748 IA1_18805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 F0F1 ATP synthase subunit alpha YP_008615497.1 3929666 R 1064551 CDS YP_008615498.1 549481119 complement(3931220..3931753) 1 NC_022525.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit delta 3931753 1064551003749 IA1_18810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 F0F1 ATP synthase subunit delta YP_008615498.1 3931220 R 1064551 CDS YP_008615499.1 549481120 complement(3931768..3932238) 1 NC_022525.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit B 3932238 1064551003750 IA1_18815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 F0F1 ATP synthase subunit B YP_008615499.1 3931768 R 1064551 CDS YP_008615500.1 549482340 complement(3932298..3932537) 1 NC_022525.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; F0F1 ATP synthase subunit C 3932537 1064551003751 IA1_18820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 F0F1 ATP synthase subunit C YP_008615500.1 3932298 R 1064551 CDS YP_008615501.1 549481121 complement(3932584..3933399) 1 NC_022525.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit A 3933399 1064551003752 IA1_18825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 F0F1 ATP synthase subunit A YP_008615501.1 3932584 R 1064551 CDS YP_008615502.1 549482341 complement(3933408..3933635) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ATP synthase subunit I 3933635 1064551003753 IA1_18830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP synthase subunit I YP_008615502.1 3933408 R 1064551 CDS YP_008615503.1 549481122 complement(3934404..3935033) 1 NC_022525.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 3935033 gidB 1064551003754 gidB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 16S rRNA methyltransferase YP_008615503.1 3934404 R 1064551 CDS YP_008615504.1 549481123 complement(3935130..3937019) 1 NC_022525.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA uridine 5-carboxymethylaminomethyl modification protein 3937019 gidA 1064551003755 gidA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA uridine 5-carboxymethylaminomethyl modification protein YP_008615504.1 3935130 R 1064551 CDS YP_008615505.1 549481124 complement(3937398..3937871) 1 NC_022525.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: Protein Homology.; FMN-binding protein MioC 3937871 1064551003756 IA1_18845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 FMN-binding protein MioC YP_008615505.1 3937398 R 1064551 CDS YP_008615506.1 549481125 complement(3937931..3938389) 1 NC_022525.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3938389 1064551003757 IA1_18850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615506.1 3937931 R 1064551 CDS YP_008615507.1 549481126 3938540..3939532 1 NC_022525.1 catalyzes the formation of asparagine from aspartate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; asparagine synthetase AsnA 3939532 1064551003758 IA1_18855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 asparagine synthetase AsnA YP_008615507.1 3938540 D 1064551 CDS YP_008615508.1 549481127 complement(3939537..3940988) 1 NC_022525.1 contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; Derived by automated computational analysis using gene prediction method: Protein Homology.; protoheme IX farnesyltransferase 3940988 yieM 1064551003759 yieM Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protoheme IX farnesyltransferase YP_008615508.1 3939537 R 1064551 CDS YP_008615509.1 549481128 complement(3940982..3942478) 1 NC_022525.1 interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory ATPase RavA 3942478 1064551003760 IA1_18865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 regulatory ATPase RavA YP_008615509.1 3940982 R 1064551 CDS YP_008615510.1 549481129 3942826..3944694 1 NC_022525.1 Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter Kup 3944694 trkD 1064551003761 trkD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 potassium transporter Kup YP_008615510.1 3942826 D 1064551 CDS YP_008615511.1 549481130 3944891..3945310 1 NC_022525.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-ribose pyranase 3945310 1064551003762 IA1_18875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-ribose pyranase YP_008615511.1 3944891 D 1064551 CDS YP_008615512.1 549481131 3945273..3946823 1 NC_022525.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-ribose transporter ATP binding protein 3946823 1064551003763 IA1_18880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-ribose transporter ATP binding protein YP_008615512.1 3945273 D 1064551 CDS YP_008615513.1 549481132 3946829..3947794 1 NC_022525.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose ABC transporter permease 3947794 rbsC 1064551003764 rbsC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribose ABC transporter permease YP_008615513.1 3946829 D 1064551 CDS YP_008615514.1 549482342 3947819..3948709 1 NC_022525.1 periplasmic substrate-binding component of the ATP-dependent ribose transport system; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; D-ribose transporter subunit RbsB 3948709 1064551003765 IA1_18890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-ribose transporter subunit RbsB YP_008615514.1 3947819 D 1064551 CDS YP_008615515.1 549481133 3948842..3949771 1 NC_022525.1 catalyzes the formation of D-ribose 5-phosphate from ribose; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribokinase 3949771 1064551003766 IA1_18895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribokinase YP_008615515.1 3948842 D 1064551 CDS YP_008615516.1 549481134 3949775..3950773 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family transcriptional regulator 3950773 1064551003767 IA1_18900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LacI family transcriptional regulator YP_008615516.1 3949775 D 1064551 CDS YP_008615517.1 549482343 complement(3950739..3952166) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; major facilitator transporter 3952166 1064551003768 IA1_18905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 major facilitator transporter YP_008615517.1 3950739 R 1064551 CDS YP_008615518.1 549481135 complement(3952178..3952882) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 3952882 1064551003769 IA1_18910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GntR family transcriptional regulator YP_008615518.1 3952178 R 1064551 CDS YP_008615519.1 549481136 complement(3958772..3959608) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3959608 1064551003776 IA1_18945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615519.1 3958772 R 1064551 CDS YP_008615520.1 549481137 3959727..3960065 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3960065 1064551003777 IA1_18950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615520.1 3959727 D 1064551 CDS YP_008615521.1 549481138 complement(3960090..3961610) 1 NC_022525.1 among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease 3961610 1064551003778 IA1_18955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-dependent protease YP_008615521.1 3960090 R 1064551 CDS YP_008615522.1 549481139 3962200..3963846 1 NC_022525.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 3963846 1064551003779 IA1_18960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetolactate synthase YP_008615522.1 3962200 D 1064551 CDS YP_008615523.1 549481140 3963843..3964106 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 3964106 ilvM 1064551003780 ilvM Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetolactate synthase YP_008615523.1 3963843 D 1064551 CDS YP_008615524.1 549481141 3964124..3965053 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid aminotransferase 3965053 1064551003781 IA1_18970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 branched-chain amino acid aminotransferase YP_008615524.1 3964124 D 1064551 CDS YP_008615525.1 549482344 3965214..3967064 1 NC_022525.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dihydroxy-acid dehydratase 3967064 1064551003782 IA1_18975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydroxy-acid dehydratase YP_008615525.1 3965214 D 1064551 CDS YP_008615526.1 549481142 3967064..3968611 1 NC_022525.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine dehydratase 3968611 1064551003783 IA1_18980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 threonine dehydratase YP_008615526.1 3967064 D 1064551 CDS YP_008615527.1 549481143 3968849..3969211 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3969211 1064551003784 IA1_18985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615527.1 3968849 D 1064551 CDS YP_008615528.1 549481144 3969208..3969549 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator 3969549 1064551003785 IA1_18990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 XRE family transcriptional regulator YP_008615528.1 3969208 D 1064551 CDS YP_008615529.1 549481145 complement(3969552..3970439) 1 NC_022525.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3970439 1064551003786 IA1_18995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615529.1 3969552 R 1064551 CDS YP_008615530.1 549481146 3970603..3972078 1 NC_022525.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ketol-acid reductoisomerase 3972078 1064551003787 IA1_19000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ketol-acid reductoisomerase YP_008615530.1 3970603 D 1064551 CDS YP_008615531.1 549481147 complement(3972170..3972451) 1 NC_022525.1 rotamase C; accelerates isomerization of the peptidyl prolyl bond; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase 3972451 1064551003788 IA1_19005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidyl-prolyl cis-trans isomerase YP_008615531.1 3972170 R 1064551 CDS YP_008615532.1 549482345 3972555..3972803 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cyclic nucleotide-binding protein 3972803 1064551003789 IA1_19010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cyclic nucleotide-binding protein YP_008615532.1 3972555 D 1064551 CDS YP_008615533.1 549481148 3972989..3975013 1 NC_022525.1 single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase Rep 3975013 1064551003790 IA1_19015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-dependent DNA helicase Rep YP_008615533.1 3972989 D 1064551 CDS YP_008615534.1 549481149 complement(3975053..3976534) 1 NC_022525.1 catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.; guanosine pentaphosphate phosphohydrolase 3976534 1064551003791 IA1_19020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 guanosine pentaphosphate phosphohydrolase YP_008615534.1 3975053 R 1064551 CDS YP_008615535.1 549481150 complement(3976671..3977936) 1 NC_022525.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 3977936 1064551003792 IA1_19025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA helicase YP_008615535.1 3976671 R 1064551 CDS YP_008615536.1 549481151 3978080..3978409 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin 3978409 trxA 1064551003793 trxA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thioredoxin YP_008615536.1 3978080 D 1064551 CDS YP_008615537.1 549481152 3978828..3980087 1 NC_022525.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription termination factor Rho 3980087 rho 1064551003794 rho Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcription termination factor Rho YP_008615537.1 3978828 D 1064551 CDS YP_008615538.1 549482346 complement(3980082..3980285) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3980285 1064551003795 IA1_19040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615538.1 3980082 R 1064551 CDS YP_008615539.1 549481153 3980327..3981430 1 NC_022525.1 catalyzes the formation of alpha-N-acetylglucosaminyl-pyrophosphoryl-undecaprenyl from alpha-N-acetylglucosaminyl 1-phosphate and the lipid carrier undecaprenyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 3981430 1064551003796 IA1_19045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase YP_008615539.1 3980327 D 1064551 CDS YP_008615540.1 549481154 3981442..3982488 1 NC_022525.1 Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide biosynthesis protein WzzE 3982488 1064551003797 IA1_19050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipopolysaccharide biosynthesis protein WzzE YP_008615540.1 3981442 D 1064551 CDS YP_008615541.1 549481155 3982544..3983674 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylglucosamine 2-epimerase 3983674 1064551003798 IA1_19055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-N-acetylglucosamine 2-epimerase YP_008615541.1 3982544 D 1064551 CDS YP_008615542.1 549481156 3983671..3984933 1 NC_022525.1 catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetyl-D-mannosamine dehydrogenase 3984933 wecC 1064551003799 wecC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-N-acetyl-D-mannosamine dehydrogenase YP_008615542.1 3983671 D 1064551 CDS YP_008615543.1 549481157 3984933..3986000 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dTDP-glucose 4,6-dehydratase 3986000 1064551003800 IA1_19065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dTDP-glucose 4,6-dehydratase YP_008615543.1 3984933 D 1064551 CDS YP_008615544.1 549481158 3986033..3986914 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-1-phosphate thymidylyltransferase 3986914 1064551003801 IA1_19070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucose-1-phosphate thymidylyltransferase YP_008615544.1 3986033 D 1064551 CDS YP_008615545.1 549481159 3986892..3987569 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; TDP-fucosamine acetyltransferase 3987569 1064551003802 IA1_19075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 TDP-fucosamine acetyltransferase YP_008615545.1 3986892 D 1064551 CDS YP_008615546.1 549481160 3987574..3988704 1 NC_022525.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; TDP-4-oxo-6-deoxy-D-glucose aminotransferase 3988704 1064551003803 IA1_19080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 TDP-4-oxo-6-deoxy-D-glucose aminotransferase YP_008615546.1 3987574 D 1064551 CDS YP_008615547.1 549481161 3988706..3989956 1 NC_022525.1 involved in the movement of lipid III across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; translocase 3989956 1064551003804 IA1_19085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 translocase YP_008615547.1 3988706 D 1064551 CDS YP_008615548.1 549481162 3989953..3991032 1 NC_022525.1 catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-alpha-L-fucosyltransferase 3991032 1064551003805 IA1_19090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-alpha-L-fucosyltransferase YP_008615548.1 3989953 D 1064551 CDS YP_008615549.1 549481163 3991029..3992387 1 NC_022525.1 enterobacterial common antigen polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.; polymerase 3992387 1064551003806 IA1_19095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 polymerase YP_008615549.1 3991029 D 1064551 CDS YP_008615550.1 549481164 3992384..3993124 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetyl-D-mannosaminuronic acid transferase 3993124 1064551003807 IA1_19100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-N-acetyl-D-mannosaminuronic acid transferase YP_008615550.1 3992384 D 1064551 CDS YP_008615551.1 549481165 3993331..3994716 1 NC_022525.1 cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 3994716 proY 1064551003808 proY Salmonella enterica subsp. enterica serovar Thompson str. RM6836 permease YP_008615551.1 3993331 D 1064551 CDS YP_008615552.1 549482347 complement(3995833..3997032) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; protoheme IX biogenesis protein 3997032 1064551003813 IA1_19130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protoheme IX biogenesis protein YP_008615552.1 3995833 R 1064551 CDS YP_008615553.1 549482348 complement(3997032..3998201) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; uroporphyrinogen III C-methyltransferase 3998201 1064551003814 IA1_19135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 uroporphyrinogen III C-methyltransferase YP_008615553.1 3997032 R 1064551 CDS YP_008615554.1 549481166 complement(3998223..3998963) 1 NC_022525.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen-III synthase 3998963 hemD 1064551003815 hemD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 uroporphyrinogen-III synthase YP_008615554.1 3998223 R 1064551 CDS YP_008615555.1 549481167 complement(3998960..3999916) 1 NC_022525.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; porphobilinogen deaminase 3999916 hemC 1064551003816 hemC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 porphobilinogen deaminase YP_008615555.1 3998960 R 1064551 CDS YP_008615556.1 549481168 4000278..4002824 1 NC_022525.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylate cyclase 4002824 cyaA 1064551003817 cyaA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adenylate cyclase YP_008615556.1 4000278 D 1064551 CDS YP_008615557.1 549481169 complement(4002902..4003222) 1 NC_022525.1 iron-dependent inhibitor of iron-sulfur cluster formation; iron-binding and oxidizing protein; defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; frataxin 4003222 cyaY 1064551003818 cyaY Salmonella enterica subsp. enterica serovar Thompson str. RM6836 frataxin YP_008615557.1 4002902 R 1064551 CDS YP_008615558.1 549481170 complement(4003292..4003681) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4003681 1064551003819 IA1_19160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615558.1 4003292 R 1064551 CDS YP_008615559.1 549482349 complement(4003809..4003901) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4003901 1064551003820 IA1_19165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615559.1 4003809 R 1064551 CDS YP_008615560.1 549481171 4004377..4004577 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4004577 1064551003821 IA1_19170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615560.1 4004377 D 1064551 CDS YP_008615561.1 549481172 4004617..4005441 1 NC_022525.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminopimelate epimerase 4005441 dapF 1064551003822 dapF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diaminopimelate epimerase YP_008615561.1 4004617 D 1064551 CDS YP_008615562.1 549481173 4005438..4006145 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4006145 1064551003823 IA1_19180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615562.1 4005438 D 1064551 CDS YP_008615563.1 549481174 4006142..4007044 1 NC_022525.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine recombinase XerC 4007044 xerC 1064551003824 xerC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tyrosine recombinase XerC YP_008615563.1 4006142 D 1064551 CDS YP_008615564.1 549481175 4007044..4007760 1 NC_022525.1 YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavin mononucleotide phosphatase 4007760 1064551003825 IA1_19190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 flavin mononucleotide phosphatase YP_008615564.1 4007044 D 1064551 CDS YP_008615565.1 549481176 4007896..4010058 1 NC_022525.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-dependent helicase 4010058 uvrD 1064551003826 uvrD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-dependent helicase YP_008615565.1 4007896 D 1064551 CDS YP_008615566.1 549481177 4010530..4011480 1 NC_022525.1 responsible for the influx of magnesium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium/nickel/cobalt transporter CorA 4011480 1064551003827 IA1_19200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 magnesium/nickel/cobalt transporter CorA YP_008615566.1 4010530 D 1064551 CDS YP_008615567.1 549482350 complement(4011528..4011908) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4011908 1064551003828 IA1_19205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615567.1 4011528 R 1064551 CDS YP_008615568.1 549482351 4012083..4012379 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4012379 1064551003829 IA1_19210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615568.1 4012083 D 1064551 CDS YP_008615569.1 549481178 complement(4012419..4013306) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; chloramphenical resistance permease RarD 4013306 1064551003830 IA1_19215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chloramphenical resistance permease RarD YP_008615569.1 4012419 R 1064551 CDS YP_008615570.1 549481179 complement(4013350..4013817) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4013817 1064551003831 IA1_19220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615570.1 4013350 R 1064551 CDS YP_008615571.1 549481180 4013982..4014851 1 NC_022525.1 catalyzes the hydrolysis of phosphatidylcholine; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipase A 4014851 1064551003832 IA1_19225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phospholipase A YP_008615571.1 4013982 D 1064551 CDS YP_008615572.1 549481181 4014917..4016764 1 NC_022525.1 functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase RecQ 4016764 1064551003833 IA1_19230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-dependent DNA helicase RecQ YP_008615572.1 4014917 D 1064551 CDS YP_008615573.1 549481182 4016828..4017448 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine transporter RhtB 4017448 1064551003834 IA1_19235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 threonine transporter RhtB YP_008615573.1 4016828 D 1064551 CDS YP_008615574.1 549481183 complement(4017488..4018108) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine transporter RhtB 4018108 rhtB 1064551003835 rhtB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 threonine transporter RhtB YP_008615574.1 4017488 R 1064551 CDS YP_008615575.1 549481184 4018219..4019235 1 NC_022525.1 lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysophospholipase L2 4019235 1064551003836 IA1_19245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lysophospholipase L2 YP_008615575.1 4018219 D 1064551 CDS YP_008615576.1 549481185 4019251..4020051 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 4020051 1064551003837 IA1_19250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrolase YP_008615576.1 4019251 D 1064551 CDS YP_008615577.1 549482352 4020132..4021031 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4021031 1064551003838 IA1_19255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615577.1 4020132 D 1064551 CDS YP_008615578.1 549481186 complement(4020919..4021872) 1 NC_022525.1 homocysteine-binding ; positive regulator of metA, metE and metH; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4021872 1064551003839 IA1_19260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615578.1 4020919 R 1064551 CDS YP_008615579.1 549481187 4022108..4024372 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 4024372 1064551003840 IA1_19265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase YP_008615579.1 4022108 D 1064551 CDS YP_008615580.1 549482353 complement(4024516..4024650) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4024650 1064551003841 IA1_19270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615580.1 4024516 R 1064551 CDS YP_008615581.1 549481188 4024707..4026050 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; anaerobic sulfatase maturase 4026050 1064551003842 IA1_19275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 anaerobic sulfatase maturase YP_008615581.1 4024707 D 1064551 CDS YP_008615582.1 549481189 complement(4026130..4026942) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxymethylenebutenolidase 4026942 1064551003843 IA1_19280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carboxymethylenebutenolidase YP_008615582.1 4026130 R 1064551 CDS YP_008615583.1 549481190 4027201..4027962 1 NC_022525.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; uridine phosphorylase 4027962 1064551003844 IA1_19285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 uridine phosphorylase YP_008615583.1 4027201 D 1064551 CDS YP_008615584.1 549481191 4028102..4029532 1 NC_022525.1 YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA recombination protein RmuC 4029532 1064551003845 IA1_19290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA recombination protein RmuC YP_008615584.1 4028102 D 1064551 CDS YP_008615585.1 549481192 4029628..4030383 1 NC_022525.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone and menaquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; ubiquinone/menaquinone biosynthesis methyltransferase 4030383 ubiE 1064551003846 ubiE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ubiquinone/menaquinone biosynthesis methyltransferase YP_008615585.1 4029628 D 1064551 CDS YP_008615586.1 549481193 4030393..4030998 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4030998 1064551003847 IA1_19300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615586.1 4030393 D 1064551 CDS YP_008615587.1 549481194 4030995..4032635 1 NC_022525.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; Derived by automated computational analysis using gene prediction method: Protein Homology.; ubiquinone biosynthesis protein UbiB 4032635 ubiB 1064551003848 ubiB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ubiquinone biosynthesis protein UbiB YP_008615587.1 4030995 D 1064551 CDS YP_008615588.1 549481195 4032841..4033095 1 NC_022525.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit TatA 4033095 tatA 1064551003849 tatA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 preprotein translocase subunit TatA YP_008615588.1 4032841 D 1064551 CDS YP_008615589.1 549481196 4033099..4033647 1 NC_022525.1 mediates the export of protein precursors bearing twin-arginine signal peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; translocase 4033647 1064551003850 IA1_19315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 translocase YP_008615589.1 4033099 D 1064551 CDS YP_008615590.1 549481197 4033650..4034429 1 NC_022525.1 with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; twin-arginine protein translocation system subunit TatC 4034429 1064551003851 IA1_19320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 twin-arginine protein translocation system subunit TatC YP_008615590.1 4033650 D 1064551 CDS YP_008615591.1 549481198 4034471..4035253 1 NC_022525.1 magnesium dependent; involved in quality control of mutated Tat exported substrates; not involved in the Sec-independent protein export system; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNase TatD 4035253 1064551003852 IA1_19325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNase TatD YP_008615591.1 4034471 D 1064551 CDS YP_008615592.1 549481199 complement(4035261..4035749) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4035749 rfaH 1064551003853 rfaH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615592.1 4035261 R 1064551 CDS YP_008615593.1 549481200 4035935..4037413 1 NC_022525.1 catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-polyprenyl-4-hydroxybenzoate decarboxylase 4037413 1064551003854 IA1_19335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-polyprenyl-4-hydroxybenzoate decarboxylase YP_008615593.1 4035935 D 1064551 CDS YP_008615594.1 549481201 4037499..4038200 1 NC_022525.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; Derived by automated computational analysis using gene prediction method: Protein Homology.; FMN reductase 4038200 fre 1064551003855 fre Salmonella enterica subsp. enterica serovar Thompson str. RM6836 FMN reductase YP_008615594.1 4037499 D 1064551 CDS YP_008615595.1 549481202 4038454..4040277 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; arylsulfate sulfotransferase 4040277 1064551003856 IA1_19345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arylsulfate sulfotransferase YP_008615595.1 4038454 D 1064551 CDS YP_008615596.1 549481203 complement(4040474..4041637) 1 NC_022525.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-ketoacyl-CoA thiolase 4041637 fadA 1064551003857 fadA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-ketoacyl-CoA thiolase YP_008615596.1 4040474 R 1064551 CDS YP_008615597.1 549482354 complement(4041647..4043836) 1 NC_022525.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; multifunctional fatty acid oxidation complex subunit alpha 4043836 fadB 1064551003858 fadB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multifunctional fatty acid oxidation complex subunit alpha YP_008615597.1 4041647 R 1064551 CDS YP_008615598.1 549481204 4044026..4045357 1 NC_022525.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; Derived by automated computational analysis using gene prediction method: Protein Homology.; proline dipeptidase 4045357 1064551003859 IA1_19360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 proline dipeptidase YP_008615598.1 4044026 D 1064551 CDS YP_008615599.1 549481205 4045357..4045971 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4045971 1064551003860 IA1_19365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615599.1 4045357 D 1064551 CDS YP_008615600.1 549482355 4046010..4047461 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; potassium transporter 4047461 1064551003861 IA1_19370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 potassium transporter YP_008615600.1 4046010 D 1064551 CDS YP_008615601.1 549481206 4047473..4048018 1 NC_022525.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; Derived by automated computational analysis using gene prediction method: Protein Homology.; protoporphyrinogen oxidase 4048018 hemG 1064551003862 hemG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protoporphyrinogen oxidase YP_008615601.1 4047473 D 1064551 CDS YP_008615602.1 549482356 complement(4054056..4054586) 1 NC_022525.1 in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; molybdopterin-guanine dinucleotide biosynthesis protein B 4054586 1064551003868 IA1_19405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdopterin-guanine dinucleotide biosynthesis protein B YP_008615602.1 4054056 R 1064551 CDS YP_008615603.1 549481207 complement(4054568..4055152) 1 NC_022525.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4055152 mobA 1064551003869 mobA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_008615603.1 4054568 R 1064551 CDS YP_008615604.1 549481208 4055222..4055491 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4055491 1064551003870 IA1_19415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615604.1 4055222 D 1064551 CDS YP_008615605.1 549481209 4055568..4056554 1 NC_022525.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine protein kinase 4056554 1064551003871 IA1_19420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 serine/threonine protein kinase YP_008615605.1 4055568 D 1064551 CDS YP_008615606.1 549481210 4056571..4057194 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol-disulfide isomerase 4057194 1064551003872 IA1_19425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiol-disulfide isomerase YP_008615606.1 4056571 D 1064551 CDS YP_008615607.1 549481211 complement(4057207..4058115) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acyltransferase 4058115 1064551003873 IA1_19430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acyltransferase YP_008615607.1 4057207 R 1064551 CDS YP_008615608.1 549481212 4058503..4061289 1 NC_022525.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase I 4061289 1064551003874 IA1_19435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA polymerase I YP_008615608.1 4058503 D 1064551 CDS YP_008615609.1 549481213 complement(4061624..4062256) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein YsxC 4062256 1064551003875 IA1_19440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GTP-binding protein YsxC YP_008615609.1 4061624 R 1064551 CDS YP_008615610.1 549482357 4062523..4062720 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4062720 1064551003876 IA1_19445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615610.1 4062523 D 1064551 CDS YP_008615611.1 549481214 4062839..4063354 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase activator 4063354 1064551003877 IA1_19450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GTPase activator YP_008615611.1 4062839 D 1064551 CDS YP_008615612.1 549481215 4063543..4064916 1 NC_022525.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; Derived by automated computational analysis using gene prediction method: Protein Homology.; coproporphyrinogen III oxidase 4064916 1064551003878 IA1_19455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 coproporphyrinogen III oxidase YP_008615612.1 4063543 D 1064551 CDS YP_008615613.1 549481216 complement(4065229..4066638) 1 NC_022525.1 response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulation protein NR(I) 4066638 glnG 1064551003879 glnG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrogen regulation protein NR(I) YP_008615613.1 4065229 R 1064551 CDS YP_008615614.1 549481217 complement(4066647..4067696) 1 NC_022525.1 sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulation protein NR(II) 4067696 glnL 1064551003880 glnL Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrogen regulation protein NR(II) YP_008615614.1 4066647 R 1064551 CDS YP_008615615.1 549481218 complement(4067971..4069380) 1 NC_022525.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine synthetase 4069380 glnA 1064551003881 glnA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamine synthetase YP_008615615.1 4067971 R 1064551 CDS YP_008615616.1 549481219 4069756..4071579 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein TypA 4071579 1064551003882 IA1_19475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GTP-binding protein TypA YP_008615616.1 4069756 D 1064551 CDS YP_008615617.1 549481220 complement(4071634..4072368) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 4072368 1064551003883 IA1_19480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrolase YP_008615617.1 4071634 R 1064551 CDS YP_008615618.1 549481221 complement(4072353..4073231) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4073231 1064551003884 IA1_19485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615618.1 4072353 R 1064551 CDS YP_008615619.1 549481222 complement(4073228..4074469) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; coproporphyrinogen III oxidase 4074469 1064551003885 IA1_19490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 coproporphyrinogen III oxidase YP_008615619.1 4073228 R 1064551 CDS YP_008615620.1 549481223 complement(4074471..4075346) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4075346 1064551003886 IA1_19495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615620.1 4074471 R 1064551 CDS YP_008615621.1 549482358 complement(4075339..4076325) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4076325 1064551003887 IA1_19500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615621.1 4075339 R 1064551 CDS YP_008615622.1 549481224 complement(4076377..4077225) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4077225 1064551003888 IA1_19505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615622.1 4076377 R 1064551 CDS YP_008615623.1 549481225 complement(4077382..4078074) 1 NC_022525.1 porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin L 4078074 ompL 1064551003889 ompL Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane porin L YP_008615623.1 4077382 R 1064551 CDS YP_008615624.1 549481226 complement(4078142..4079560) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4079560 1064551003890 IA1_19515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615624.1 4078142 R 1064551 CDS YP_008615625.1 549481227 complement(4079606..4080988) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4080988 1064551003891 IA1_19520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615625.1 4079606 R 1064551 CDS YP_008615626.1 549481228 complement(4081034..4083070) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-glucosidase 4083070 1064551003892 IA1_19525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alpha-glucosidase YP_008615626.1 4081034 R 1064551 CDS YP_008615627.1 549482359 complement(4083194..4084069) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4084069 1064551003893 IA1_19530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615627.1 4083194 R 1064551 CDS YP_008615628.1 549481229 complement(4084158..4085045) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aldose-1-epimerase 4085045 1064551003894 IA1_19535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aldose-1-epimerase YP_008615628.1 4084158 R 1064551 CDS YP_008615629.1 549481230 complement(4085132..4086373) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar isomerase 4086373 1064551003895 IA1_19540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar isomerase YP_008615629.1 4085132 R 1064551 CDS YP_008615630.1 549481231 complement(4086389..4087267) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aldolase 4087267 1064551003896 IA1_19545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aldolase YP_008615630.1 4086389 R 1064551 CDS YP_008615631.1 549481232 complement(4087290..4088186) 1 NC_022525.1 catalyzes the formation of gamma hydroxybutyrate from succinate semialdehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-dependent gamma-hydroxybutyrate dehydrogenase 4088186 1064551003897 IA1_19550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH-dependent gamma-hydroxybutyrate dehydrogenase YP_008615631.1 4087290 R 1064551 CDS YP_008615632.1 549482360 4088351..4089247 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar kinase 4089247 1064551003898 IA1_19555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar kinase YP_008615632.1 4088351 D 1064551 CDS YP_008615633.1 549481233 4089281..4090084 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 4090084 1064551003899 IA1_19560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DeoR family transcriptional regulator YP_008615633.1 4089281 D 1064551 CDS YP_008615634.1 549481234 4090275..4090874 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-D-glucose-1-phosphatase 4090874 1064551003900 IA1_19565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alpha-D-glucose-1-phosphatase YP_008615634.1 4090275 D 1064551 CDS YP_008615635.1 549481235 4090868..4091740 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4091740 1064551003901 IA1_19570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615635.1 4090868 D 1064551 CDS YP_008615636.1 549481236 4091737..4092174 1 NC_022525.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-tyrosyl-tRNA(Tyr) deacylase 4092174 1064551003902 IA1_19575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-tyrosyl-tRNA(Tyr) deacylase YP_008615636.1 4091737 D 1064551 CDS YP_008615637.1 549481237 4092171..4093160 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4093160 1064551003903 IA1_19580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615637.1 4092171 D 1064551 CDS YP_008615638.1 549482361 complement(4093175..4093603) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4093603 1064551003904 IA1_19585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615638.1 4093175 R 1064551 CDS YP_008615639.1 549481238 complement(4093618..4093929) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoplasmic protein 4093929 1064551003905 IA1_19590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytoplasmic protein YP_008615639.1 4093618 R 1064551 CDS YP_008615640.1 549481239 complement(4094015..4094944) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lipase 4094944 1064551003906 IA1_19595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipase YP_008615640.1 4094015 R 1064551 CDS YP_008615641.1 549482362 4095162..4095473 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4095473 1064551003907 IA1_19600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615641.1 4095162 D 1064551 CDS YP_008615642.1 549481240 4095474..4095764 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Cro/Cl family transcriptional regulator 4095764 1064551003908 IA1_19605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Cro/Cl family transcriptional regulator YP_008615642.1 4095474 D 1064551 CDS YP_008615643.1 549481241 complement(4095811..4096740) 1 NC_022525.1 required for the formation of active formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase accessory protein FdhE 4096740 1064551003909 IA1_19610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate dehydrogenase accessory protein FdhE YP_008615643.1 4095811 R 1064551 CDS YP_008615644.1 549481242 complement(4096737..4097372) 1 NC_022525.1 cytochrome b556(FDO) component; heme containing; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit gamma 4097372 1064551003910 IA1_19615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate dehydrogenase-N subunit gamma YP_008615644.1 4096737 R 1064551 CDS YP_008615645.1 549481243 complement(4097369..4098271) 1 NC_022525.1 beta subunit; involved in the use of formate as an electron donor during aerobic respiration; acts to transfer electrons from the major(alpha subunit) to the cytochrome b556(gamma subunit); Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit beta 4098271 1064551003911 IA1_19620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate dehydrogenase-N subunit beta YP_008615645.1 4097369 R 1064551 CDS YP_008615646.1 549482363 complement(4098284..4100698) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; formate dehydrogenase subunit alpha 4100698 1064551003912 IA1_19625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate dehydrogenase subunit alpha YP_008615646.1 4098284 R 1064551 CDS YP_008615647.1 549482364 complement(4100747..4101334) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sulfate ABC transporter substrate-binding protein 4101334 1064551003913 IA1_19630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfate ABC transporter substrate-binding protein YP_008615647.1 4100747 R 1064551 CDS YP_008615648.1 549481244 4101529..4102365 1 NC_022525.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase accessory protein 4102365 1064551003914 IA1_19635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate dehydrogenase accessory protein YP_008615648.1 4101529 D 1064551 CDS YP_008615649.1 549482365 complement(4102633..4103664) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4103664 1064551003915 IA1_19640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615649.1 4102633 R 1064551 CDS YP_008615650.1 549482366 4103888..4104946 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4104946 1064551003916 IA1_19645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615650.1 4103888 D 1064551 CDS YP_008615651.1 549481245 complement(4105301..4105624) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid transport 4105624 1064551003917 IA1_19650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 branched-chain amino acid transport YP_008615651.1 4105301 R 1064551 CDS YP_008615652.1 549481246 complement(4105624..4106283) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease 4106283 1064551003918 IA1_19655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 branched-chain amino acid ABC transporter permease YP_008615652.1 4105624 R 1064551 CDS YP_008615653.1 549481247 4106384..4106932 1 NC_022525.1 phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4106932 1064551003919 IA1_19660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615653.1 4106384 D 1064551 CDS YP_008615654.1 549481248 complement(4107021..4107335) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; L-rhamnose mutarotase 4107335 1064551003920 IA1_19665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-rhamnose mutarotase YP_008615654.1 4107021 R 1064551 CDS YP_008615655.1 549481249 complement(4107332..4108480) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase 4108480 1064551003921 IA1_19670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alcohol dehydrogenase YP_008615655.1 4107332 R 1064551 CDS YP_008615656.1 549481250 complement(4108607..4109434) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; rhamnulose-1-phosphate aldolase 4109434 1064551003922 IA1_19675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 rhamnulose-1-phosphate aldolase YP_008615656.1 4108607 R 1064551 CDS YP_008615657.1 549481251 complement(4109577..4110836) 1 NC_022525.1 catalyzes the formation of L-rhamnulose from L-rhamnose; Derived by automated computational analysis using gene prediction method: Protein Homology.; rhamnose isomerase 4110836 1064551003923 IA1_19680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 rhamnose isomerase YP_008615657.1 4109577 R 1064551 CDS YP_008615658.1 549481252 complement(4110833..4112302) 1 NC_022525.1 catalyzes the ATP-dependent phosphorylation of rhamnulose; Derived by automated computational analysis using gene prediction method: Protein Homology.; rhamnulokinase 4112302 rhaB 1064551003924 rhaB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 rhamnulokinase YP_008615658.1 4110833 R 1064551 CDS YP_008615659.1 549481253 4112590..4113426 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 4113426 1064551003925 IA1_19690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 AraC family transcriptional regulator YP_008615659.1 4112590 D 1064551 CDS YP_008615660.1 549481254 4113579..4114427 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4114427 1064551003926 IA1_19695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615660.1 4113579 D 1064551 CDS YP_008615661.1 549481255 complement(4114424..4115458) 1 NC_022525.1 transports L-rhamnose and L-lyxose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar:proton symporter 4115458 1064551003927 IA1_19700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar:proton symporter YP_008615661.1 4114424 R 1064551 CDS YP_008615662.1 549482367 4115928..4116053 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4116053 1064551003928 IA1_19705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615662.1 4115928 D 1064551 CDS YP_008615663.1 549481256 4116090..4116761 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4116761 1064551003929 IA1_19710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615663.1 4116090 D 1064551 CDS YP_008615664.1 549481257 complement(4116919..4118226) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4118226 1064551003930 IA1_19715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615664.1 4116919 R 1064551 CDS YP_008615665.1 549481258 complement(4118219..4118734) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-independent transporter subunit 4118734 1064551003931 IA1_19720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-independent transporter subunit YP_008615665.1 4118219 R 1064551 CDS YP_008615666.1 549481259 complement(4118753..4119736) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4119736 1064551003932 IA1_19725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615666.1 4118753 R 1064551 CDS YP_008615667.1 549481260 4120065..4120685 1 NC_022525.1 SodA; manganese binding; only present under aerobic conditions; destroys free radicals; Derived by automated computational analysis using gene prediction method: Protein Homology.; superoxide dismutase 4120685 1064551003933 IA1_19730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 superoxide dismutase YP_008615667.1 4120065 D 1064551 CDS YP_008615668.1 549481261 4120755..4121444 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-N-hydroxylaminopurine resistance protein 4121444 1064551003934 IA1_19735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 6-N-hydroxylaminopurine resistance protein YP_008615668.1 4120755 D 1064551 CDS YP_008615669.1 549481262 4121456..4121851 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4121851 1064551003935 IA1_19740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615669.1 4121456 D 1064551 CDS YP_008615670.1 549481263 complement(4121902..4123275) 1 NC_022525.1 part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine kinase 4123275 cpxA 1064551003936 cpxA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 histidine kinase YP_008615670.1 4121902 R 1064551 CDS YP_008615671.1 549481264 complement(4123272..4123970) 1 NC_022525.1 response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4123970 1064551003937 IA1_19750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615671.1 4123272 R 1064551 CDS YP_008615672.1 549481265 4124121..4124621 1 NC_022525.1 repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; repressor CpxP 4124621 cpxP 1064551003938 cpxP Salmonella enterica subsp. enterica serovar Thompson str. RM6836 repressor CpxP YP_008615672.1 4124121 D 1064551 CDS YP_008615673.1 549481266 4124769..4125671 1 NC_022525.1 member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 4125671 fieF 1064551003939 fieF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron transporter YP_008615673.1 4124769 D 1064551 CDS YP_008615674.1 549481267 4125856..4126818 1 NC_022525.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphofructokinase 4126818 1064551003940 IA1_19765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 6-phosphofructokinase YP_008615674.1 4125856 D 1064551 CDS YP_008615675.1 549481268 4127022..4128011 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate transporter subunit 4128011 1064551003941 IA1_19770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfate transporter subunit YP_008615675.1 4127022 D 1064551 CDS YP_008615676.1 549481269 4128112..4128867 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; CDP-diacylglycerol pyrophosphatase 4128867 1064551003942 IA1_19775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 CDP-diacylglycerol pyrophosphatase YP_008615676.1 4128112 D 1064551 CDS YP_008615677.1 549481270 4129131..4130465 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:galactoside symporter 4130465 1064551003943 IA1_19780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sodium:galactoside symporter YP_008615677.1 4129131 D 1064551 CDS YP_008615678.1 549481271 4130476..4131435 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoimidazole riboside kinase 4131435 1064551003944 IA1_19785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aminoimidazole riboside kinase YP_008615678.1 4130476 D 1064551 CDS YP_008615679.1 549481272 4131445..4132485 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-ribosylglycohydrolase 4132485 1064551003945 IA1_19790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ADP-ribosylglycohydrolase YP_008615679.1 4131445 D 1064551 CDS YP_008615680.1 549481273 4132539..4133270 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 4133270 1064551003946 IA1_19795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GntR family transcriptional regulator YP_008615680.1 4132539 D 1064551 CDS YP_008615681.1 549482368 4133368..4133538 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4133538 1064551003947 IA1_19800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615681.1 4133368 D 1064551 CDS YP_008615682.1 549482369 4133554..4133685 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4133685 1064551003948 IA1_19805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615682.1 4133554 D 1064551 CDS YP_008615683.1 549482370 complement(4133775..4134125) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4134125 1064551003949 IA1_19810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615683.1 4133775 R 1064551 CDS YP_008615684.1 549481274 complement(4134139..4135731) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; autoinducer kinase 4135731 1064551003950 IA1_19815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 autoinducer kinase YP_008615684.1 4134139 R 1064551 CDS YP_008615685.1 549481275 complement(4135818..4136777) 1 NC_022525.1 regulates the transcription of lsr genes; involved in autoinducer 2 uptake, biofilm formation and stress responses; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4136777 1064551003951 IA1_19820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615685.1 4135818 R 1064551 CDS YP_008615686.1 549482371 4137033..4138568 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4138568 1064551003952 IA1_19825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615686.1 4137033 D 1064551 CDS YP_008615687.1 549482372 4138562..4139605 1 NC_022525.1 with LsrADB is involved in the transport of autoindiuce 2; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter permease 4139605 1064551003953 IA1_19830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ABC transporter permease YP_008615687.1 4138562 D 1064551 CDS YP_008615688.1 549481276 4140631..4141653 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; autoinducer 4141653 1064551003955 IA1_19835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 autoinducer YP_008615688.1 4140631 D 1064551 CDS YP_008615689.1 549481277 4141682..4142557 1 NC_022525.1 involved in autoinducer 2 transport and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldolase 4142557 1064551003956 IA1_19840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aldolase YP_008615689.1 4141682 D 1064551 CDS YP_008615690.1 549481278 4142637..4142930 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; autoinducer-2 (AI-2) modifying protein LsrG 4142930 1064551003957 IA1_19845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 autoinducer-2 (AI-2) modifying protein LsrG YP_008615690.1 4142637 D 1064551 CDS YP_008615691.1 549481279 4142940..4143704 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; epimerase 4143704 1064551003958 IA1_19850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 epimerase YP_008615691.1 4142940 D 1064551 CDS YP_008615692.1 549481280 complement(4143796..4144563) 1 NC_022525.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; triosephosphate isomerase 4144563 1064551003959 IA1_19855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 triosephosphate isomerase YP_008615692.1 4143796 R 1064551 CDS YP_008615693.1 549481281 complement(4144676..4145272) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4145272 1064551003960 IA1_19860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615693.1 4144676 R 1064551 CDS YP_008615694.1 549481282 4145373..4145801 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4145801 1064551003961 IA1_19865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615694.1 4145373 D 1064551 CDS YP_008615695.1 549481283 complement(4145908..4146654) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin-NADP reductase 4146654 1064551003962 IA1_19870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferredoxin-NADP reductase YP_008615695.1 4145908 R 1064551 CDS YP_008615696.1 549481284 complement(4146751..4147761) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose 1,6-bisphosphatase 4147761 1064551003963 IA1_19875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fructose 1,6-bisphosphatase YP_008615696.1 4146751 R 1064551 CDS YP_008615697.1 549481285 complement(4147873..4149381) 1 NC_022525.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol kinase 4149381 glpK 1064551003964 glpK Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerol kinase YP_008615697.1 4147873 R 1064551 CDS YP_008615698.1 549481286 complement(4149402..4150247) 1 NC_022525.1 involved in the transport of glycerol into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol uptake facilitator GlpF 4150247 1064551003965 IA1_19885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerol uptake facilitator GlpF YP_008615698.1 4149402 R 1064551 CDS YP_008615699.1 549481287 4150646..4150885 1 NC_022525.1 interacts with FisZ and is necessary for Z-ring formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; septal ring assembly protein ZapB 4150885 1064551003966 IA1_19890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 septal ring assembly protein ZapB YP_008615699.1 4150646 D 1064551 CDS YP_008615700.1 549481288 complement(4151107..4151592) 1 NC_022525.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease activity regulator protein RraA 4151592 1064551003967 IA1_19895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonuclease activity regulator protein RraA YP_008615700.1 4151107 R 1064551 CDS YP_008615701.1 549481289 complement(4151685..4152614) 1 NC_022525.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1,4-dihydroxy-2-naphthoate prenyltransferase 4152614 1064551003968 IA1_19900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 1,4-dihydroxy-2-naphthoate prenyltransferase YP_008615701.1 4151685 R 1064551 CDS YP_008615702.1 549481290 complement(4152681..4154012) 1 NC_022525.1 heat shock protein involved in degradation of misfolded proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease 4154012 hslU 1064551003969 hslU Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-dependent protease YP_008615702.1 4152681 R 1064551 CDS YP_008615703.1 549481291 complement(4154022..4154552) 1 NC_022525.1 heat shock protein involved in degradation of misfolded proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease 4154552 1064551003970 IA1_19910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ATP-dependent protease YP_008615703.1 4154022 R 1064551 CDS YP_008615704.1 549481292 complement(4154644..4155642) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsN 4155642 1064551003971 IA1_19915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsN YP_008615704.1 4154644 R 1064551 CDS YP_008615705.1 549481293 complement(4155736..4156761) 1 NC_022525.1 negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4156761 1064551003972 IA1_19920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615705.1 4155736 R 1064551 CDS YP_008615706.1 549481294 complement(4156916..4159114) 1 NC_022525.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; primosome assembly protein PriA 4159114 1064551003973 IA1_19925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 primosome assembly protein PriA YP_008615706.1 4156916 R 1064551 CDS YP_008615707.1 549481295 4159318..4159530 1 NC_022525.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L31 4159530 rpmE 1064551003974 rpmE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L31 YP_008615707.1 4159318 D 1064551 CDS YP_008615708.1 549482373 complement(4159576..4160238) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4160238 1064551003975 IA1_19935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615708.1 4159576 R 1064551 CDS YP_008615709.1 549481296 complement(4160439..4162229) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; arylsulfate sulfotransferase 4162229 1064551003976 IA1_19940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arylsulfate sulfotransferase YP_008615709.1 4160439 R 1064551 CDS YP_008615710.1 549481297 complement(4162686..4163003) 1 NC_022525.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4163003 1064551003977 IA1_19945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615710.1 4162686 R 1064551 CDS YP_008615711.1 549481298 4163268..4164428 1 NC_022525.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.; cystathionine gamma-synthase 4164428 1064551003978 IA1_19950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cystathionine gamma-synthase YP_008615711.1 4163268 D 1064551 CDS YP_008615712.1 549481299 4164431..4166863 1 NC_022525.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional aspartate kinase II/homoserine dehydrogenase II 4166863 metL 1064551003979 metL Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional aspartate kinase II/homoserine dehydrogenase II YP_008615712.1 4164431 D 1064551 CDS YP_008615713.1 549481300 complement(4166979..4167836) 1 NC_022525.1 participates in the regulation of osmotic pressure changes within the cel; Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive channel MscS 4167836 1064551003980 IA1_19960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 mechanosensitive channel MscS YP_008615713.1 4166979 R 1064551 CDS YP_008615714.1 549482374 complement(4167839..4168837) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4168837 1064551003981 IA1_19965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615714.1 4167839 R 1064551 CDS YP_008615715.1 549481301 complement(4169072..4170196) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4170196 1064551003982 IA1_19970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615715.1 4169072 R 1064551 CDS YP_008615716.1 549481302 4170332..4171888 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-nucleotidase 4171888 1064551003983 IA1_19975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5'-nucleotidase YP_008615716.1 4170332 D 1064551 CDS YP_008615717.1 549481303 4172083..4172973 1 NC_022525.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5,10-methylenetetrahydrofolate reductase 4172973 metF 1064551003984 metF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5,10-methylenetetrahydrofolate reductase YP_008615717.1 4172083 D 1064551 CDS YP_008615718.1 549481304 4173138..4175318 1 NC_022525.1 has catalase and peroxidase activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; catalase/hydroperoxidase HPI(I) 4175318 1064551003985 IA1_19985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 catalase/hydroperoxidase HPI(I) YP_008615718.1 4173138 D 1064551 CDS YP_008615719.1 549481305 complement(4175376..4175999) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:quinone oxidoreductase 4175999 1064551003986 IA1_19990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH:quinone oxidoreductase YP_008615719.1 4175376 R 1064551 CDS YP_008615720.1 549481306 complement(4176258..4177361) 1 NC_022525.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol dehydrogenase 4177361 gldA 1064551003987 gldA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerol dehydrogenase YP_008615720.1 4176258 R 1064551 CDS YP_008615721.1 549481307 complement(4177373..4178035) 1 NC_022525.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase 4178035 1064551003988 IA1_20000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fructose-bisphosphate aldolase YP_008615721.1 4177373 R 1064551 CDS YP_008615722.1 549481308 complement(4178046..4180547) 1 NC_022525.1 Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate-protein phosphotransferase 4180547 1064551003989 IA1_20005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoenolpyruvate-protein phosphotransferase YP_008615722.1 4178046 R 1064551 CDS YP_008615723.1 549481309 4180856..4181935 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIBC 4181935 1064551003990 IA1_20010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS fructose transporter subunit IIBC YP_008615723.1 4180856 D 1064551 CDS YP_008615724.1 549481310 4181950..4182270 1 NC_022525.1 FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIB 4182270 1064551003991 IA1_20015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS fructose transporter subunit IIB YP_008615724.1 4181950 D 1064551 CDS YP_008615725.1 549481311 4182369..4184666 1 NC_022525.1 involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate acetyltransferase 4184666 pflD 1064551003992 pflD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate acetyltransferase YP_008615725.1 4182369 D 1064551 CDS YP_008615726.1 549481312 4184632..4185510 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate formate lyase II activase 4185510 1064551003993 IA1_20025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyruvate formate lyase II activase YP_008615726.1 4184632 D 1064551 CDS YP_008615727.1 549481313 4185512..4185865 1 NC_022525.1 FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIB 4185865 1064551003994 IA1_20030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS fructose transporter subunit IIB YP_008615727.1 4185512 D 1064551 CDS YP_008615728.1 549481314 complement(4185852..4186703) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 4186703 1064551003995 IA1_20035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 AraC family transcriptional regulator YP_008615728.1 4185852 R 1064551 CDS YP_008615729.1 549481315 complement(4186864..4188597) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4188597 1064551003996 IA1_20040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615729.1 4186864 R 1064551 CDS YP_008615730.1 549481316 complement(4188808..4191459) 1 NC_022525.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate carboxylase 4191459 1064551003997 IA1_20045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoenolpyruvate carboxylase YP_008615730.1 4188808 R 1064551 CDS YP_008615731.1 549481317 complement(4191828..4192979) 1 NC_022525.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetylornithine deacetylase 4192979 1064551003998 IA1_20050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetylornithine deacetylase YP_008615731.1 4191828 R 1064551 CDS YP_008615732.1 549481318 4193068..4194072 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyl-gamma-glutamyl-phosphate reductase 4194072 1064551003999 IA1_20055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetyl-gamma-glutamyl-phosphate reductase YP_008615732.1 4193068 D 1064551 CDS YP_008615733.1 549481319 4194083..4194856 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acetylglutamate kinase 4194856 1064551004000 IA1_20060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetylglutamate kinase YP_008615733.1 4194083 D 1064551 CDS YP_008615734.1 549481320 4194974..4196350 1 NC_022525.1 catalyzes the formation of arginine from (N-L-arginino)succinate; Derived by automated computational analysis using gene prediction method: Protein Homology.; argininosuccinate lyase 4196350 1064551004001 IA1_20065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 argininosuccinate lyase YP_008615734.1 4194974 D 1064551 CDS YP_008615735.1 549481321 4196636..4197553 1 NC_022525.1 Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4197553 1064551004002 IA1_20070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615735.1 4196636 D 1064551 CDS YP_008615736.1 549481322 complement(4197536..4198936) 1 NC_022525.1 catalyzes the conversion of NADPH to NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; soluble pyridine nucleotide transhydrogenase 4198936 1064551004003 IA1_20075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 soluble pyridine nucleotide transhydrogenase YP_008615736.1 4197536 R 1064551 CDS YP_008615737.1 549481323 4199135..4199770 1 NC_022525.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4199770 1064551004004 IA1_20080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615737.1 4199135 D 1064551 CDS YP_008615738.1 549481324 4199786..4200145 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4200145 1064551004005 IA1_20085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615738.1 4199786 D 1064551 CDS YP_008615739.1 549481325 complement(4200192..4201292) 1 NC_022525.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (uracil-5-)-methyltransferase 4201292 1064551004006 IA1_20090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA (uracil-5-)-methyltransferase YP_008615739.1 4200192 R 1064551 CDS YP_008615740.1 549481326 4201666..4203510 1 NC_022525.1 involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; vitamin B12/cobalamin outer membrane transporter 4203510 btuB 1064551004007 btuB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 vitamin B12/cobalamin outer membrane transporter YP_008615740.1 4201666 D 1064551 CDS YP_008615741.1 549482375 4203524..4204306 1 NC_022525.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glutamate racemase 4204306 1064551004008 IA1_20100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutamate racemase YP_008615741.1 4203524 D 1064551 CDS YP_008615742.1 549481327 4209971..4210999 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylenolpyruvoylglucosamine reductase 4210999 1064551004014 IA1_20130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-N-acetylenolpyruvoylglucosamine reductase YP_008615742.1 4209971 D 1064551 CDS YP_008615743.1 549481328 4210996..4211958 1 NC_022525.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor 4211958 1064551004015 IA1_20135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor YP_008615743.1 4210996 D 1064551 CDS YP_008615744.1 549481329 complement(4211993..4212943) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; pantothenate kinase 4212943 1064551004016 IA1_20140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pantothenate kinase YP_008615744.1 4211993 R 1064551 CDS YP_008615745.1 549482376 4214615..4215085 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4215085 1064551004021 IA1_20165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615745.1 4214615 D 1064551 CDS YP_008615746.1 549481330 4215315..4215698 1 NC_022525.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecE 4215698 secE 1064551004022 secE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 preprotein translocase subunit SecE YP_008615746.1 4215315 D 1064551 CDS YP_008615747.1 549481331 4215700..4216245 1 NC_022525.1 Modulates Rho-dependent transcription termination; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription antitermination protein NusG 4216245 nusG 1064551004023 nusG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcription antitermination protein NusG YP_008615747.1 4215700 D 1064551 CDS YP_008615748.1 549481332 4216403..4216831 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L11 4216831 1064551004024 IA1_20180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L11 YP_008615748.1 4216403 D 1064551 CDS YP_008615749.1 549481333 4216835..4217539 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L1 4217539 1064551004025 IA1_20185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L1 YP_008615749.1 4216835 D 1064551 CDS YP_008615750.1 549481334 4217959..4218456 1 NC_022525.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L10 4218456 rplJ 1064551004026 rplJ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L10 YP_008615750.1 4217959 D 1064551 CDS YP_008615751.1 549481335 4218523..4218888 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L7/L12 4218888 1064551004027 IA1_20195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L7/L12 YP_008615751.1 4218523 D 1064551 CDS YP_008615752.1 549481336 4219206..4223234 1 NC_022525.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit beta 4223234 rpoB 1064551004028 rpoB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-directed RNA polymerase subunit beta YP_008615752.1 4219206 D 1064551 CDS YP_008615753.1 549481337 4223311..4227534 1 NC_022525.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit beta' 4227534 1064551004029 IA1_20205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-directed RNA polymerase subunit beta' YP_008615753.1 4223311 D 1064551 CDS YP_008615754.1 549482377 4227621..4227902 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4227902 1064551004030 IA1_20210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615754.1 4227621 D 1064551 CDS YP_008615755.1 549482378 complement(4228202..4228339) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4228339 1064551004031 IA1_20215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615755.1 4228202 R 1064551 CDS YP_008615756.1 549482379 4228702..4228917 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4228917 1064551004032 IA1_20220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615756.1 4228702 D 1064551 CDS YP_008615757.1 549481338 complement(4228999..4230132) 1 NC_022525.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine biosynthesis protein ThiH 4230132 thiH 1064551004033 thiH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiamine biosynthesis protein ThiH YP_008615757.1 4228999 R 1064551 CDS YP_008615758.1 549481339 complement(4230129..4230899) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; thiazole synthase 4230899 1064551004034 IA1_20230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiazole synthase YP_008615758.1 4230129 R 1064551 CDS YP_008615759.1 549481340 complement(4230901..4231101) 1 NC_022525.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur carrier protein ThiS 4231101 1064551004035 IA1_20235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sulfur carrier protein ThiS YP_008615759.1 4230901 R 1064551 CDS YP_008615760.1 549481341 complement(4231082..4231840) 1 NC_022525.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin biosynthesis protein MoeB 4231840 1064551004036 IA1_20240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molybdopterin biosynthesis protein MoeB YP_008615760.1 4231082 R 1064551 CDS YP_008615761.1 549481342 complement(4231833..4232468) 1 NC_022525.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine-phosphate pyrophosphorylase 4232468 1064551004037 IA1_20245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiamine-phosphate pyrophosphorylase YP_008615761.1 4231833 R 1064551 CDS YP_008615762.1 549481343 complement(4232468..4234363) 1 NC_022525.1 catalyzes the formation of 4-amino-2-methyl-5-phosphomethylpyrimidine from 5-amino-1-(5-phospho-D-ribosyl)imidazole and S-adenosyl-L-methionine in thiamine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphomethylpyrimidine synthase ThiC 4234363 1064551004038 IA1_20250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphomethylpyrimidine synthase ThiC YP_008615762.1 4232468 R 1064551 CDS YP_008615763.1 549481344 complement(4234727..4235215) 1 NC_022525.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-RNA polymerase sigma 70 factor 4235215 1064551004039 IA1_20255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 anti-RNA polymerase sigma 70 factor YP_008615763.1 4234727 R 1064551 CDS YP_008615764.1 549481345 4235308..4236081 1 NC_022525.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH pyrophosphatase 4236081 nudC 1064551004040 nudC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 NADH pyrophosphatase YP_008615764.1 4235308 D 1064551 CDS YP_008615765.1 549481346 4236122..4237186 1 NC_022525.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen decarboxylase 4237186 hemE 1064551004041 hemE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 uroporphyrinogen decarboxylase YP_008615765.1 4236122 D 1064551 CDS YP_008615766.1 549481347 4237196..4237867 1 NC_022525.1 Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease VIII 4237867 1064551004042 IA1_20270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endonuclease VIII YP_008615766.1 4237196 D 1064551 CDS YP_008615767.1 549481348 4237909..4238499 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4238499 1064551004043 IA1_20275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615767.1 4237909 D 1064551 CDS YP_008615768.1 549481349 4238686..4238958 1 NC_022525.1 histone-like DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4238958 1064551004044 IA1_20280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615768.1 4238686 D 1064551 CDS YP_008615769.1 549481350 4238970..4239662 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4239662 1064551004045 IA1_20285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615769.1 4238970 D 1064551 CDS YP_008615770.1 549481351 complement(4239704..4240159) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc resistance protein 4240159 zraP 1064551004046 zraP Salmonella enterica subsp. enterica serovar Thompson str. RM6836 zinc resistance protein YP_008615770.1 4239704 R 1064551 CDS YP_008615771.1 549481352 4240347..4241810 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein ZraS 4241810 1064551004047 IA1_20295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensor protein ZraS YP_008615771.1 4240347 D 1064551 CDS YP_008615772.1 549481353 4241816..4243141 1 NC_022525.1 DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetoacetate metabolism regulatory protein AtoC 4243141 1064551004048 IA1_20300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetoacetate metabolism regulatory protein AtoC YP_008615772.1 4241816 D 1064551 CDS YP_008615773.1 549481354 complement(4243138..4244427) 1 NC_022525.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylamine--glycine ligase 4244427 1064551004049 IA1_20305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoribosylamine--glycine ligase YP_008615773.1 4243138 R 1064551 CDS YP_008615774.1 549481355 complement(4244443..4246032) 1 NC_022525.1 involved in de novo purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; purine biosynthesis protein purH 4246032 purH 1064551004050 purH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 purine biosynthesis protein purH YP_008615774.1 4244443 R 1064551 CDS YP_008615775.1 549481356 complement(4252231..4252668) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase 4252668 1064551004055 IA1_20335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetyltransferase YP_008615775.1 4252231 R 1064551 CDS YP_008615776.1 549481357 4252825..4253754 1 NC_022525.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; homoserine O-succinyltransferase 4253754 1064551004056 IA1_20340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 homoserine O-succinyltransferase YP_008615776.1 4252825 D 1064551 CDS YP_008615777.1 549481358 4254023..4255624 1 NC_022525.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate synthase 4255624 1064551004057 IA1_20345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 malate synthase YP_008615777.1 4254023 D 1064551 CDS YP_008615778.1 549481359 4255656..4256960 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase 4256960 1064551004058 IA1_20350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 isocitrate lyase YP_008615778.1 4255656 D 1064551 CDS YP_008615779.1 549481360 4257062..4258813 1 NC_022525.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional isocitrate dehydrogenase kinase/phosphatase 4258813 aceK 1064551004059 aceK Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional isocitrate dehydrogenase kinase/phosphatase YP_008615779.1 4257062 D 1064551 CDS YP_008615780.1 549482380 complement(4258777..4259211) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4259211 1064551004060 IA1_20360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615780.1 4258777 R 1064551 CDS YP_008615781.1 549481361 complement(4259195..4260019) 1 NC_022525.1 regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator 4260019 1064551004061 IA1_20365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IclR family transcriptional regulator YP_008615781.1 4259195 R 1064551 CDS YP_008615782.1 549481362 4260324..4264007 1 NC_022525.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; B12-dependent methionine synthase 4264007 metH 1064551004062 metH Salmonella enterica subsp. enterica serovar Thompson str. RM6836 B12-dependent methionine synthase YP_008615782.1 4260324 D 1064551 CDS YP_008615783.1 549481363 4264274..4265905 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4265905 1064551004063 IA1_20375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615783.1 4264274 D 1064551 CDS YP_008615784.1 549482381 complement(4265981..4266670) 1 NC_022525.1 peptidase E; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; (alpha)-aspartyl dipeptidase 4266670 1064551004064 IA1_20380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 (alpha)-aspartyl dipeptidase YP_008615784.1 4265981 R 1064551 CDS YP_008615785.1 549481364 4266878..4267417 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4267417 1064551004065 IA1_20385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615785.1 4266878 D 1064551 CDS YP_008615786.1 549481365 4267464..4268333 1 NC_022525.1 catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridine synthase F 4268333 1064551004066 IA1_20390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 23S rRNA pseudouridine synthase F YP_008615786.1 4267464 D 1064551 CDS YP_008615787.1 549481366 complement(4268330..4268602) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4268602 1064551004067 IA1_20395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615787.1 4268330 R 1064551 CDS YP_008615788.1 549482382 complement(4268700..4269641) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sodium transporter 4269641 1064551004068 IA1_20400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sodium transporter YP_008615788.1 4268700 R 1064551 CDS YP_008615789.1 549482383 complement(4269903..4270631) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4270631 1064551004069 IA1_20405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615789.1 4269903 R 1064551 CDS YP_008615790.1 549482384 complement(4270945..4271178) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4271178 1064551004070 IA1_20410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615790.1 4270945 R 1064551 CDS YP_008615791.1 549482385 complement(4271370..4271825) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4271825 1064551004071 IA1_20415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615791.1 4271370 R 1064551 CDS YP_008615792.1 549482386 complement(4271822..4272427) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4272427 1064551004072 IA1_20420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615792.1 4271822 R 1064551 CDS YP_008615793.1 549482387 complement(4272432..4274201) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein 4274201 1064551004073 IA1_20425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tail protein YP_008615793.1 4272432 R 1064551 CDS YP_008615794.1 549481367 complement(4274204..4274836) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tail fiber protein 4274836 1064551004074 IA1_20430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tail fiber protein YP_008615794.1 4274204 R 1064551 CDS YP_008615795.1 549481368 complement(4274829..4275944) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate protein 4275944 1064551004075 IA1_20435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 baseplate protein YP_008615795.1 4274829 R 1064551 CDS YP_008615796.1 549481369 complement(4275935..4276294) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate protein 4276294 1064551004076 IA1_20440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 baseplate protein YP_008615796.1 4275935 R 1064551 CDS YP_008615797.1 549482388 4276355..4276477 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4276477 1064551004077 IA1_20445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615797.1 4276355 D 1064551 CDS YP_008615798.1 549482389 complement(4276458..4278005) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4278005 1064551004078 IA1_20450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615798.1 4276458 R 1064551 CDS YP_008615799.1 549481370 complement(4278005..4278934) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; bactoprenol glucosyl transferase 4278934 1064551004079 IA1_20455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bactoprenol glucosyl transferase YP_008615799.1 4278005 R 1064551 CDS YP_008615800.1 549481371 complement(4278931..4279293) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; translocase 4279293 1064551004080 IA1_20460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 translocase YP_008615800.1 4278931 R 1064551 CDS YP_008615801.1 549481372 complement(4279621..4280343) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate protein 4280343 1064551004081 IA1_20465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 baseplate protein YP_008615801.1 4279621 R 1064551 CDS YP_008615802.1 549481373 complement(4280353..4281396) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4281396 1064551004082 IA1_20470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615802.1 4280353 R 1064551 CDS YP_008615803.1 549481374 complement(4281384..4281593) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4281593 1064551004083 IA1_20475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615803.1 4281384 R 1064551 CDS YP_008615804.1 549481375 complement(4281593..4282546) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4282546 1064551004084 IA1_20480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615804.1 4281593 R 1064551 CDS YP_008615805.1 549481376 complement(4282546..4284900) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 4284900 1064551004085 IA1_20485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tail protein YP_008615805.1 4282546 R 1064551 CDS YP_008615806.1 549482390 complement(4284997..4285125) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4285125 1064551004086 IA1_20490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615806.1 4284997 R 1064551 CDS YP_008615807.1 549482391 complement(4285085..4285402) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4285402 1064551004087 IA1_20495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615807.1 4285085 R 1064551 CDS YP_008615808.1 549481377 complement(4285454..4285978) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 4285978 1064551004088 IA1_20500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tail protein YP_008615808.1 4285454 R 1064551 CDS YP_008615809.1 549481378 complement(4285978..4287405) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 4287405 1064551004089 IA1_20505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tail protein YP_008615809.1 4285978 R 1064551 CDS YP_008615810.1 549481379 complement(4287395..4287592) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4287592 1064551004090 IA1_20510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615810.1 4287395 R 1064551 CDS YP_008615811.1 549481380 complement(4287589..4288044) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4288044 1064551004091 IA1_20515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615811.1 4287589 R 1064551 CDS YP_008615812.1 549481381 complement(4288205..4288519) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4288519 1064551004092 IA1_20520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615812.1 4288205 R 1064551 CDS YP_008615813.1 549481382 complement(4288532..4289137) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic murein transglycosylase 4289137 1064551004093 IA1_20525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lytic murein transglycosylase YP_008615813.1 4288532 R 1064551 CDS YP_008615814.1 549481383 complement(4289140..4289427) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4289427 1064551004094 IA1_20530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615814.1 4289140 R 1064551 CDS YP_008615815.1 549481384 4290004..4290351 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 4290351 1064551004095 IA1_20535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-binding protein YP_008615815.1 4290004 D 1064551 CDS YP_008615816.1 549481385 complement(4290482..4291831) 1 NC_022525.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate kinase 4291831 1064551004096 IA1_20540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aspartate kinase YP_008615816.1 4290482 R 1064551 CDS YP_008615817.1 549481386 4292176..4293825 1 NC_022525.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-6-phosphate isomerase 4293825 pgi 1064551004097 pgi Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucose-6-phosphate isomerase YP_008615817.1 4292176 D 1064551 CDS YP_008615818.1 549482392 4294269..4294511 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4294511 1064551004098 IA1_20550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615818.1 4294269 D 1064551 CDS YP_008615819.1 549481387 4294575..4295213 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4295213 1064551004099 IA1_20555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615819.1 4294575 D 1064551 CDS YP_008615820.1 549481388 4295210..4295947 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4295947 1064551004100 IA1_20560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615820.1 4295210 D 1064551 CDS YP_008615821.1 549481389 4295947..4298043 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4298043 1064551004101 IA1_20565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615821.1 4295947 D 1064551 CDS YP_008615822.1 549481390 4298186..4298596 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate-starvation-inducible protein PsiE 4298596 1064551004102 IA1_20570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphate-starvation-inducible protein PsiE YP_008615822.1 4298186 D 1064551 CDS YP_008615823.1 549481391 complement(4298762..4299652) 1 NC_022525.1 with MalKFE is involved in the transport of maltose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose transporter permease 4299652 malG 1064551004103 malG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 maltose transporter permease YP_008615823.1 4298762 R 1064551 CDS YP_008615824.1 549482393 complement(4299667..4301211) 1 NC_022525.1 with MalKGE is involved in maltose transport into the cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; maltose transporter membrane protein 4301211 malF 1064551004104 malF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 maltose transporter membrane protein YP_008615824.1 4299667 R 1064551 CDS YP_008615825.1 549481392 complement(4301343..4302533) 1 NC_022525.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter substrate-binding protein 4302533 malE 1064551004105 malE Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar ABC transporter substrate-binding protein YP_008615825.1 4301343 R 1064551 CDS YP_008615826.1 549481393 4302895..4304004 1 NC_022525.1 with malEFG is involved in import of maltose/maltodextrin; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter ATP-binding protein 4304004 1064551004106 IA1_20590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar ABC transporter ATP-binding protein YP_008615826.1 4302895 D 1064551 CDS YP_008615827.1 549481394 4304093..4305451 1 NC_022525.1 porin involved in the transport of maltose and maltodextrins; Derived by automated computational analysis using gene prediction method: Protein Homology.; maltoporin 4305451 lamB 1064551004107 lamB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 maltoporin YP_008615827.1 4304093 D 1064551 CDS YP_008615828.1 549481395 4305615..4306532 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose operon protein 4306532 1064551004108 IA1_20600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 maltose operon protein YP_008615828.1 4305615 D 1064551 CDS YP_008615829.1 549481396 4306714..4307211 1 NC_022525.1 catalyzes the formation of 4-hydroxybenzoate from chorismate; Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate pyruvate lyase 4307211 ubiC 1064551004109 ubiC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 chorismate pyruvate lyase YP_008615829.1 4306714 D 1064551 CDS YP_008615830.1 549481397 4307225..4308097 1 NC_022525.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxybenzoate polyprenyltransferase 4308097 ubiA 1064551004110 ubiA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4-hydroxybenzoate polyprenyltransferase YP_008615830.1 4307225 D 1064551 CDS YP_008615831.1 549481398 complement(4308196..4310616) 1 NC_022525.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate acyltransferase 4310616 1064551004111 IA1_20615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycerol-3-phosphate acyltransferase YP_008615831.1 4308196 R 1064551 CDS YP_008615832.1 549481399 4310787..4311155 1 NC_022525.1 catalyzes the phosphorylation of diacylglycerol to form diacylglycerol phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; diacylglycerol kinase 4311155 1064551004112 IA1_20620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diacylglycerol kinase YP_008615832.1 4310787 D 1064551 CDS YP_008615833.1 549481400 4311264..4311872 1 NC_022525.1 Represses a number of genes involved in the response to DNA damage; Derived by automated computational analysis using gene prediction method: Protein Homology.; LexA repressor 4311872 1064551004113 IA1_20625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LexA repressor YP_008615833.1 4311264 D 1064551 CDS YP_008615834.1 549481401 4312051..4313376 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-damage-inducible protein 4313376 1064551004114 IA1_20630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-damage-inducible protein YP_008615834.1 4312051 D 1064551 CDS YP_008615835.1 549482394 4313358..4313486 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4313486 1064551004115 IA1_20635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615835.1 4313358 D 1064551 CDS YP_008615836.1 549481402 4313505..4313717 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4313717 1064551004116 IA1_20640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615836.1 4313505 D 1064551 CDS YP_008615837.1 549481403 complement(4313817..4314332) 1 NC_022525.1 Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4314332 1064551004117 IA1_20645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615837.1 4313817 R 1064551 CDS YP_008615838.1 549481404 4314579..4315889 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugative transfer protein 4315889 1064551004118 IA1_20650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 conjugative transfer protein YP_008615838.1 4314579 D 1064551 CDS YP_008615839.1 549481405 4315977..4316975 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA-dihydrouridine synthase A 4316975 1064551004119 IA1_20655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA-dihydrouridine synthase A YP_008615839.1 4315977 D 1064551 CDS YP_008615840.1 549481406 4317143..4317385 1 NC_022525.1 coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein 4317385 pspG 1064551004120 pspG Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phage-shock protein YP_008615840.1 4317143 D 1064551 CDS YP_008615841.1 549481407 complement(4317559..4318542) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; quinone oxidoreductase 4318542 1064551004121 IA1_20665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 quinone oxidoreductase YP_008615841.1 4317559 R 1064551 CDS YP_008615842.1 549481408 4318607..4320022 1 NC_022525.1 unwinds double stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA helicase 4320022 1064551004122 IA1_20670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA helicase YP_008615842.1 4318607 D 1064551 CDS YP_008615843.1 549481409 4320054..4321133 1 NC_022525.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine racemase 4321133 alr 1064551004123 alr Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alanine racemase YP_008615843.1 4320054 D 1064551 CDS YP_008615844.1 549481410 4321319..4322512 1 NC_022525.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid aminotransferase 4322512 1064551004124 IA1_20680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aromatic amino acid aminotransferase YP_008615844.1 4321319 D 1064551 CDS YP_008615845.1 549481411 4322734..4323411 1 NC_022525.1 Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotransferase 4323411 aphA 1064551004125 aphA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphotransferase YP_008615845.1 4322734 D 1064551 CDS YP_008615846.1 549481412 4323540..4323956 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamin phosphate synthase 4323956 1064551004126 IA1_20690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiamin phosphate synthase YP_008615846.1 4323540 D 1064551 CDS YP_008615847.1 549481413 4323959..4324315 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4324315 1064551004127 IA1_20695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615847.1 4323959 D 1064551 CDS YP_008615848.1 549481414 complement(4324316..4324654) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4324654 1064551004128 IA1_20700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615848.1 4324316 R 1064551 CDS YP_008615849.1 549481415 complement(4324641..4325096) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 4325096 1064551004129 IA1_20705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoprotein YP_008615849.1 4324641 R 1064551 CDS YP_008615850.1 549481416 complement(4325228..4328053) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit A 4328053 1064551004130 IA1_20710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 excinuclease ABC subunit A YP_008615850.1 4325228 R 1064551 CDS YP_008615851.1 549481417 4328301..4328831 1 NC_022525.1 binds to single stranded DNA and PriA helcase facilitate replication restart; Derived by automated computational analysis using gene prediction method: Protein Homology.; single-stranded DNA-binding protein 4328831 1064551004131 IA1_20715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 single-stranded DNA-binding protein YP_008615851.1 4328301 D 1064551 CDS YP_008615852.1 549482395 4329872..4330504 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4330504 1064551004132 IA1_20720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615852.1 4329872 D 1064551 CDS YP_008615853.1 549481418 4330501..4331889 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4331889 1064551004133 IA1_20725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615853.1 4330501 D 1064551 CDS YP_008615854.1 549482396 4332272..4333198 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type-I secretion protein 4333198 1064551004134 IA1_20730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 type-I secretion protein YP_008615854.1 4332272 D 1064551 CDS YP_008615855.1 549481419 4333195..4334472 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transporter 4334472 1064551004135 IA1_20735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cation transporter YP_008615855.1 4333195 D 1064551 CDS YP_008615856.1 549482397 4334489..4351168 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4351168 1064551004136 IA1_20740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615856.1 4334489 D 1064551 CDS YP_008615857.1 549481420 4351208..4353274 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; antibiotic ABC transporter ATP-binding protein 4353274 1064551004137 IA1_20745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 antibiotic ABC transporter ATP-binding protein YP_008615857.1 4351208 D 1064551 CDS YP_008615858.1 549482398 complement(4353552..4353833) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4353833 1064551004138 IA1_20750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615858.1 4353552 R 1064551 CDS YP_008615859.1 549481421 4354396..4355997 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; signal peptide protein 4355997 1064551004139 IA1_20755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 signal peptide protein YP_008615859.1 4354396 D 1064551 CDS YP_008615860.1 549481422 complement(4355985..4356308) 1 NC_022525.1 regulates genes involved in response to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4356308 1064551004140 IA1_20760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615860.1 4355985 R 1064551 CDS YP_008615861.1 549481423 4356395..4356853 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4356853 1064551004141 IA1_20765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615861.1 4356395 D 1064551 CDS YP_008615862.1 549481424 4357146..4357814 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase 4357814 1064551004142 IA1_20770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glutathione S-transferase YP_008615862.1 4357146 D 1064551 CDS YP_008615863.1 549481425 4358161..4359510 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; permase 4359510 1064551004143 IA1_20775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 permase YP_008615863.1 4358161 D 1064551 CDS YP_008615864.1 549482399 complement(4359503..4359661) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4359661 1064551004144 IA1_20780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615864.1 4359503 R 1064551 CDS YP_008615865.1 549481426 4359660..4361306 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 4361306 1064551004145 IA1_20785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sodium:proton antiporter YP_008615865.1 4359660 D 1064551 CDS YP_008615866.1 549481427 complement(4361401..4362288) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4362288 1064551004146 IA1_20790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615866.1 4361401 R 1064551 CDS YP_008615867.1 549481428 4362392..4362802 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LrgA 4362802 1064551004147 IA1_20795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LrgA YP_008615867.1 4362392 D 1064551 CDS YP_008615868.1 549481429 4362795..4363484 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; LrgB 4363484 1064551004148 IA1_20800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 LrgB YP_008615868.1 4362795 D 1064551 CDS YP_008615869.1 549481430 complement(4363523..4365172) 1 NC_022525.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; actetate permease 4365172 actP 1064551004149 actP Salmonella enterica subsp. enterica serovar Thompson str. RM6836 actetate permease YP_008615869.1 4363523 R 1064551 CDS YP_008615870.1 549482400 complement(4365169..4365483) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4365483 1064551004150 IA1_20810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615870.1 4365169 R 1064551 CDS YP_008615871.1 549481431 complement(4365723..4367681) 1 NC_022525.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA synthetase 4367681 1064551004151 IA1_20815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acetyl-CoA synthetase YP_008615871.1 4365723 R 1064551 CDS YP_008615872.1 549481432 4368113..4369549 1 NC_022525.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C nitrite reductase subunit c552 4369549 nrfA 1064551004152 nrfA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome C nitrite reductase subunit c552 YP_008615872.1 4368113 D 1064551 CDS YP_008615873.1 549481433 4369661..4370227 1 NC_022525.1 part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C nitrite reductase pentaheme subunit 4370227 1064551004153 IA1_20825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome C nitrite reductase pentaheme subunit YP_008615873.1 4369661 D 1064551 CDS YP_008615874.1 549481434 4370224..4370895 1 NC_022525.1 4Fe4S subunit; may be involved in the transfer of electrons from quinones to the c-type cytochromes; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate-dependent nitrite reductase subunit NrfC 4370895 1064551004154 IA1_20830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate-dependent nitrite reductase subunit NrfC YP_008615874.1 4370224 D 1064551 CDS YP_008615875.1 549481435 4370892..4371848 1 NC_022525.1 membrane protein, may be involved in the transfer of electrons from quinones to c-type cytochromes; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate-dependent nitrite reductase subunit NrfD 4371848 1064551004155 IA1_20835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate-dependent nitrite reductase subunit NrfD YP_008615875.1 4370892 D 1064551 CDS YP_008615876.1 549482401 4371917..4373584 1 NC_022525.1 with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; heme lyase subunit NrfE 4373584 1064551004156 IA1_20840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heme lyase subunit NrfE YP_008615876.1 4371917 D 1064551 CDS YP_008615877.1 549482402 4373577..4374086 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; nitrite reductase subunit F 4374086 1064551004157 IA1_20845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 nitrite reductase subunit F YP_008615877.1 4373577 D 1064551 CDS YP_008615878.1 549481436 4374083..4374703 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; formate-dependent nitrite reductase complex subunit NrfG 4374703 1064551004158 IA1_20850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 formate-dependent nitrite reductase complex subunit NrfG YP_008615878.1 4374083 D 1064551 CDS YP_008615879.1 549481437 4375048..4376358 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; proton glutamate symport protein 4376358 1064551004159 IA1_20855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 proton glutamate symport protein YP_008615879.1 4375048 D 1064551 CDS YP_008615880.1 549481438 complement(4376516..4377205) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4377205 1064551004160 IA1_20860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615880.1 4376516 R 1064551 CDS YP_008615881.1 549482403 complement(4377382..4379061) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4379061 1064551004161 IA1_20865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615881.1 4377382 R 1064551 CDS YP_008615882.1 549482404 complement(4379110..4379529) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; spermidine/putrescine ABC transporter substrate-binding protein 4379529 1064551004162 IA1_20870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 spermidine/putrescine ABC transporter substrate-binding protein YP_008615882.1 4379110 R 1064551 CDS YP_008615883.1 549482405 complement(4379884..4380792) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aspartyl/asparaginyl beta-hydroxylase AspH 4380792 1064551004163 IA1_20875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aspartyl/asparaginyl beta-hydroxylase AspH YP_008615883.1 4379884 R 1064551 CDS YP_008615884.1 549481439 complement(4381050..4381484) 1 NC_022525.1 PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoalkylphosphonic acid N-acetyltransferase 4381484 1064551004164 IA1_20880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aminoalkylphosphonic acid N-acetyltransferase YP_008615884.1 4381050 R 1064551 CDS YP_008615885.1 549481440 complement(4381636..4382079) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4382079 1064551004165 IA1_20885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615885.1 4381636 R 1064551 CDS YP_008615886.1 549481441 complement(4382199..4382534) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4382534 1064551004166 IA1_20890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615886.1 4382199 R 1064551 CDS YP_008615887.1 549481442 4383043..4384503 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; proline/glycine betaine transporter 4384503 1064551004167 IA1_20895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 proline/glycine betaine transporter YP_008615887.1 4383043 D 1064551 CDS YP_008615888.1 549482406 4384573..4384662 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4384662 1064551004168 IA1_20900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615888.1 4384573 D 1064551 CDS YP_008615889.1 549482407 complement(4384670..4385749) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sensor protein BasS/PmrB 4385749 1064551004169 IA1_20905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensor protein BasS/PmrB YP_008615889.1 4384670 R 1064551 CDS YP_008615890.1 549481443 complement(4385750..4386418) 1 NC_022525.1 response regulator in two-component regulatory system with BasS; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4386418 1064551004170 IA1_20910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615890.1 4385750 R 1064551 CDS YP_008615891.1 549481444 complement(4386415..4388058) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; metal dependent hydrolase 4388058 1064551004171 IA1_20915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 metal dependent hydrolase YP_008615891.1 4386415 R 1064551 CDS YP_008615892.1 549481445 complement(4388192..4389529) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine:agmatine antiporter 4389529 1064551004172 IA1_20920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginine:agmatine antiporter YP_008615892.1 4388192 R 1064551 CDS YP_008615893.1 549482408 complement(4389669..4390328) 1 NC_022525.1 regulates genes involved in arginine decarboxylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 4390328 1064551004173 IA1_20925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615893.1 4389669 R 1064551 CDS YP_008615894.1 549482409 complement(4390357..4390527) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4390527 1064551004174 IA1_20930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615894.1 4390357 R 1064551 CDS YP_008615895.1 549482410 complement(4390727..4392997) 1 NC_022525.1 biodegradative; catalyzes the formation of agmatine from arginine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arginine decarboxylase 4392997 1064551004175 IA1_20935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginine decarboxylase YP_008615895.1 4390727 R 1064551 CDS YP_008615896.1 549482411 complement(4393227..4394159) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 4394159 1064551004176 IA1_20940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615896.1 4393227 R 1064551 CDS YP_008615897.1 549482412 4394431..4395783 1 NC_022525.1 catalyses the hydrolysis of terminal non-reducing alpha-D-galactose residues in alpha-D-galactosides; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; alpha-galactosidase 4395783 1064551004177 IA1_20945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alpha-galactosidase YP_008615897.1 4394431 D 1064551 CDS YP_008615898.1 549482413 4395867..4397297 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar:sodium symporter 4397297 1064551004178 IA1_20950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sugar:sodium symporter YP_008615898.1 4395867 D 1064551 CDS YP_008615899.1 549481446 complement(4397395..4399041) 1 NC_022525.1 catalyzes the formation of malate from fumerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase 4399041 1064551004179 IA1_20955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fumarate hydratase YP_008615899.1 4397395 R 1064551 CDS YP_008615900.1 549481447 complement(4399137..4400477) 1 NC_022525.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter 4400477 1064551004180 IA1_20960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 C4-dicarboxylate ABC transporter YP_008615900.1 4399137 R 1064551 CDS YP_008615901.1 549481448 complement(4401207..4401926) 1 NC_022525.1 response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4401926 1064551004181 IA1_20965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615901.1 4401207 R 1064551 CDS YP_008615902.1 549482414 complement(4401923..4403554) 1 NC_022525.1 C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sensory histidine kinase 4403554 1064551004182 IA1_20970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensory histidine kinase YP_008615902.1 4401923 R 1064551 CDS YP_008615903.1 549481449 4403929..4406358 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit A 4406358 1064551004183 IA1_20975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dimethyl sulfoxide reductase subunit A YP_008615903.1 4403929 D 1064551 CDS YP_008615904.1 549481450 4406372..4406998 1 NC_022525.1 oxidoreductase, Fe-S subunit; terminal electron transfer protein for the reduction of DMSO; Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit B 4406998 1064551004184 IA1_20980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dimethyl sulfoxide reductase subunit B YP_008615904.1 4406372 D 1064551 CDS YP_008615905.1 549481451 4406991..4407764 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit C 4407764 1064551004185 IA1_20985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dimethyl sulfoxide reductase subunit C YP_008615905.1 4406991 D 1064551 CDS YP_008615906.1 549482415 4407839..4408432 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dehydrogenase 4408432 1064551004186 IA1_20990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dehydrogenase YP_008615906.1 4407839 D 1064551 CDS YP_008615907.1 549481452 complement(4408516..4409916) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4409916 1064551004187 IA1_20995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615907.1 4408516 R 1064551 CDS YP_008615908.1 549481453 4410220..4411125 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4411125 1064551004188 IA1_21000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615908.1 4410220 D 1064551 CDS YP_008615909.1 549482416 4411586..4411912 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ferrichrome ABC transporter ATP-binding protein 4411912 1064551004189 IA1_21005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferrichrome ABC transporter ATP-binding protein YP_008615909.1 4411586 D 1064551 CDS YP_008615910.1 549482417 complement(4411905..4412177) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GerE family regulatory protein 4412177 1064551004190 IA1_21010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GerE family regulatory protein YP_008615910.1 4411905 R 1064551 CDS YP_008615911.1 549481454 complement(4412189..4413064) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 4413064 1064551004191 IA1_21015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 AraC family transcriptional regulator YP_008615911.1 4412189 R 1064551 CDS YP_008615912.1 549482418 4413203..4413328 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4413328 1064551004192 IA1_21020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615912.1 4413203 D 1064551 CDS YP_008615913.1 549482419 4414887..4415888 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4415888 1064551004195 IA1_21035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615913.1 4414887 D 1064551 CDS YP_008615914.1 549482420 complement(4415977..4416156) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase TnpA 4416156 1064551004196 IA1_21040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transposase TnpA YP_008615914.1 4415977 R 1064551 CDS YP_008615915.1 549482421 complement(4416137..4416427) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 4416427 1064551004197 IA1_21045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transposase YP_008615915.1 4416137 R 1064551 CDS YP_008615916.1 549482422 complement(4417165..4417917) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acid phosphatase 4417917 1064551004198 IA1_21050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 acid phosphatase YP_008615916.1 4417165 R 1064551 CDS YP_008615917.1 549482423 4418316..4418459 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4418459 1064551004199 IA1_21055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615917.1 4418316 D 1064551 CDS YP_008615918.1 549481455 complement(4418819..4419394) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4419394 1064551004201 IA1_21065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615918.1 4418819 R 1064551 CDS YP_008615919.1 549481456 complement(4419431..4421134) 1 NC_022525.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol:disulfide interchange protein 4421134 dipZ 1064551004202 dipZ Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thiol:disulfide interchange protein YP_008615919.1 4419431 R 1064551 CDS YP_008615920.1 549481457 complement(4421110..4421457) 1 NC_022525.1 copper binding protein required for copper tolerance; involved in resistance toward heavy metals; Derived by automated computational analysis using gene prediction method: Protein Homology.; divalent ion tolerance protein CutA 4421457 1064551004203 IA1_21075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 divalent ion tolerance protein CutA YP_008615920.1 4421110 R 1064551 CDS YP_008615921.1 549481458 complement(4421578..4422879) 1 NC_022525.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter 4422879 1064551004204 IA1_21080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 C4-dicarboxylate ABC transporter YP_008615921.1 4421578 R 1064551 CDS YP_008615922.1 549481459 complement(4422994..4424430) 1 NC_022525.1 catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate ammonia-lyase 4424430 aspA 1064551004205 aspA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aspartate ammonia-lyase YP_008615922.1 4422994 R 1064551 CDS YP_008615923.1 549481460 4424771..4425247 1 NC_022525.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; exclusion suppressor FxsA 4425247 fxsA 1064551004206 fxsA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exclusion suppressor FxsA YP_008615923.1 4424771 D 1064551 CDS YP_008615924.1 549481461 complement(4425306..4426568) 1 NC_022525.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 4426568 1064551004207 IA1_21095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008615924.1 4425306 R 1064551 CDS YP_008615925.1 549482424 4426823..4427116 1 NC_022525.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; co-chaperonin GroES 4427116 groES 1064551004208 groES Salmonella enterica subsp. enterica serovar Thompson str. RM6836 co-chaperonin GroES YP_008615925.1 4426823 D 1064551 CDS YP_008615926.1 549481462 4427160..4428806 1 NC_022525.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone GroEL 4428806 groEL 1064551004209 groEL Salmonella enterica subsp. enterica serovar Thompson str. RM6836 molecular chaperone GroEL YP_008615926.1 4427160 D 1064551 CDS YP_008615927.1 549481463 4429032..4429403 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4429403 1064551004210 IA1_21110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615927.1 4429032 D 1064551 CDS YP_008615928.1 549481464 complement(4429451..4430308) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4430308 1064551004211 IA1_21115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615928.1 4429451 R 1064551 CDS YP_008615929.1 549481465 complement(4430590..4431618) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine 2,3-aminomutase 4431618 1064551004212 IA1_21120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lysine 2,3-aminomutase YP_008615929.1 4430590 R 1064551 CDS YP_008615930.1 549481466 4431659..4432225 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor P 4432225 1064551004213 IA1_21125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 elongation factor P YP_008615930.1 4431659 D 1064551 CDS YP_008615931.1 549482425 4432244..4432420 1 NC_022525.1 acts as and antidote to the bacteriolytic entericidin B in the EcnAB toxin-antitoxin complex; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; entericidin A 4432420 1064551004214 IA1_21130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 entericidin A YP_008615931.1 4432244 D 1064551 CDS YP_008615932.1 549482426 4432528..4432674 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; entericidin B membrane lipoprotein 4432674 1064551004215 IA1_21135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 entericidin B membrane lipoprotein YP_008615932.1 4432528 D 1064551 CDS YP_008615933.1 549481467 complement(4432705..4433292) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 4433292 1064551004216 IA1_21140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 regulatory protein YP_008615933.1 4432705 R 1064551 CDS YP_008615934.1 549481468 4433549..4433866 1 NC_022525.1 member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 4433866 1064551004217 IA1_21145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008615934.1 4433549 D 1064551 CDS YP_008615935.1 549481469 complement(4433883..4434416) 1 NC_022525.1 lipocalin; globomycin-sensitive outer membrane lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein Blc 4434416 1064551004218 IA1_21150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 outer membrane lipoprotein Blc YP_008615935.1 4433883 R 1064551 CDS YP_008615936.1 549481470 complement(4434528..4434887) 1 NC_022525.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate reductase subunit D 4434887 1064551004219 IA1_21155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fumarate reductase subunit D YP_008615936.1 4434528 R 1064551 CDS YP_008615937.1 549481471 complement(4434898..4435293) 1 NC_022525.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate reductase subunit C 4435293 1064551004220 IA1_21160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fumarate reductase subunit C YP_008615937.1 4434898 R 1064551 CDS YP_008615938.1 549481472 complement(4435304..4436038) 1 NC_022525.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate reductase iron-sulfur subunit 4436038 1064551004221 IA1_21165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fumarate reductase iron-sulfur subunit YP_008615938.1 4435304 R 1064551 CDS YP_008615939.1 549481473 complement(4436031..4437821) 1 NC_022525.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate reductase flavoprotein subunit 4437821 1064551004222 IA1_21170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fumarate reductase flavoprotein subunit YP_008615939.1 4436031 R 1064551 CDS YP_008615940.1 549482427 4438144..4439121 1 NC_022525.1 poxA; regulates pyruvate oxidase poxB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lysyl-tRNA synthetase 4439121 1064551004223 IA1_21175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lysyl-tRNA synthetase YP_008615940.1 4438144 D 1064551 CDS YP_008615941.1 549481474 4439347..4440849 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease 4440849 1064551004224 IA1_21180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 amino acid ABC transporter permease YP_008615941.1 4439347 D 1064551 CDS YP_008615942.1 549482428 4440901..4441215 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4441215 1064551004225 IA1_21185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615942.1 4440901 D 1064551 CDS YP_008615943.1 549481475 complement(4441282..4444608) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive channel protein 4444608 1064551004226 IA1_21190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 mechanosensitive channel protein YP_008615943.1 4441282 R 1064551 CDS YP_008615944.1 549481476 complement(4444627..4445595) 1 NC_022525.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylserine decarboxylase 4445595 psd 1064551004227 psd Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphatidylserine decarboxylase YP_008615944.1 4444627 R 1064551 CDS YP_008615945.1 549481477 complement(4445687..4446739) 1 NC_022525.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase RsgA 4446739 1064551004228 IA1_21200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GTPase RsgA YP_008615945.1 4445687 R 1064551 CDS YP_008615946.1 549481478 4446846..4447391 1 NC_022525.1 3'-5' exoribonuclease specific for small oligoribonuclotides; Derived by automated computational analysis using gene prediction method: Protein Homology.; oligoribonuclease 4447391 1064551004229 IA1_21205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 oligoribonuclease YP_008615946.1 4446846 D 1064551 CDS YP_008615947.1 549481479 complement(4447453..4448172) 1 NC_022525.1 with ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine ABC transporter substrate-binding protein 4448172 1064551004230 IA1_21210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginine ABC transporter substrate-binding protein YP_008615947.1 4447453 R 1064551 CDS YP_008615948.1 549481480 complement(4449045..4450199) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster binding protein 4450199 1064551004233 IA1_21225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron-sulfur cluster binding protein YP_008615948.1 4449045 R 1064551 CDS YP_008615949.1 549481481 4450183..4451730 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; carbohydrate kinase 4451730 1064551004234 IA1_21230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbohydrate kinase YP_008615949.1 4450183 D 1064551 CDS YP_008615950.1 549481482 4451702..4452163 1 NC_022525.1 needed for nucleoid integrity; possibly involved in cell wall synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-binding protein 4452163 1064551004235 IA1_21235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ADP-binding protein YP_008615950.1 4451702 D 1064551 CDS YP_008615951.1 549481483 4452180..4453499 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase 4453499 1064551004236 IA1_21240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetylmuramoyl-L-alanine amidase YP_008615951.1 4452180 D 1064551 CDS YP_008615952.1 549481484 4453509..4455365 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA mismatch repair protein 4455365 1064551004237 IA1_21245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA mismatch repair protein YP_008615952.1 4453509 D 1064551 CDS YP_008615953.1 549481485 4455358..4456308 1 NC_022525.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA delta(2)-isopentenylpyrophosphate transferase 4456308 miaA 1064551004238 miaA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tRNA delta(2)-isopentenylpyrophosphate transferase YP_008615953.1 4455358 D 1064551 CDS YP_008615954.1 549481486 4456391..4456699 1 NC_022525.1 HF-I, host factor for RNA phage Q beta replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA-binding protein Hfq 4456699 hfq 1064551004239 hfq Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA-binding protein Hfq YP_008615954.1 4456391 D 1064551 CDS YP_008615955.1 549481487 4456771..4458051 1 NC_022525.1 involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase HflX 4458051 1064551004240 IA1_21260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GTPase HflX YP_008615955.1 4456771 D 1064551 CDS YP_008615956.1 549481488 4458266..4459525 1 NC_022525.1 with HflC inhibits proteolysis of lambda cII protein by FtsH; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsH 4459525 1064551004241 IA1_21265 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsH YP_008615956.1 4458266 D 1064551 CDS YP_008615957.1 549481489 4459528..4460532 1 NC_022525.1 with HflK inhibits proteolysis of lambda cII protein by FtsH; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsH 4460532 1064551004242 IA1_21270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell division protein FtsH YP_008615957.1 4459528 D 1064551 CDS YP_008615958.1 549482429 4460611..4460808 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4460808 1064551004243 IA1_21275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615958.1 4460611 D 1064551 CDS YP_008615959.1 549481490 4460911..4462209 1 NC_022525.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylosuccinate synthetase 4462209 1064551004244 IA1_21280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 adenylosuccinate synthetase YP_008615959.1 4460911 D 1064551 CDS YP_008615960.1 549481491 4462417..4462842 1 NC_022525.1 negatively regulates the transcription of genes upregulated by nitrosative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4462842 1064551004245 IA1_21285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615960.1 4462417 D 1064551 CDS YP_008615961.1 549481492 4462880..4465318 1 NC_022525.1 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; exoribonuclease R 4465318 1064551004246 IA1_21290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 exoribonuclease R YP_008615961.1 4462880 D 1064551 CDS YP_008615962.1 549481493 4465409..4466140 1 NC_022525.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA (guanosine-2'-O-)-methyltransferase 4466140 1064551004247 IA1_21295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 23S rRNA (guanosine-2'-O-)-methyltransferase YP_008615962.1 4465409 D 1064551 CDS YP_008615963.1 549481494 4466272..4466676 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4466676 1064551004248 IA1_21300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615963.1 4466272 D 1064551 CDS YP_008615964.1 549482430 4466691..4467389 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4467389 1064551004249 IA1_21305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615964.1 4466691 D 1064551 CDS YP_008615965.1 549481495 4467389..4468459 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4468459 1064551004250 IA1_21310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615965.1 4467389 D 1064551 CDS YP_008615966.1 549481496 4468432..4469115 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4469115 1064551004251 IA1_21315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615966.1 4468432 D 1064551 CDS YP_008615967.1 549481497 4469133..4469531 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4469531 1064551004252 IA1_21320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615967.1 4469133 D 1064551 CDS YP_008615968.1 549481498 4469541..4470179 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4470179 1064551004253 IA1_21325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615968.1 4469541 D 1064551 CDS YP_008615969.1 549481499 4470182..4471345 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4471345 1064551004254 IA1_21330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615969.1 4470182 D 1064551 CDS YP_008615970.1 549482431 4471430..4473052 1 NC_022525.1 catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; isovaleryl CoA dehydrogenase 4473052 1064551004255 IA1_21335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 isovaleryl CoA dehydrogenase YP_008615970.1 4471430 D 1064551 CDS YP_008615971.1 549482432 complement(4473097..4473372) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4473372 1064551004256 IA1_21340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615971.1 4473097 R 1064551 CDS YP_008615972.1 549481500 complement(4473503..4473832) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 4473832 1064551004257 IA1_21345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008615972.1 4473503 R 1064551 CDS YP_008615973.1 549481501 4474016..4474765 1 NC_022525.1 YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; Derived by automated computational analysis using gene prediction method: Protein Homology.; esterase 4474765 1064551004258 IA1_21350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 esterase YP_008615973.1 4474016 D 1064551 CDS YP_008615974.1 549481502 complement(4474762..4475517) 1 NC_022525.1 negative regulator of ulaG and ulaABCDEF; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4475517 1064551004259 IA1_21355 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008615974.1 4474762 R 1064551 CDS YP_008615975.1 549481503 complement(4475622..4476686) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ascorbate 6-phosphate lactonase 4476686 1064551004260 IA1_21360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-ascorbate 6-phosphate lactonase YP_008615975.1 4475622 R 1064551 CDS YP_008615976.1 549481504 4477058..4478455 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS ascorbate transporter subunit IIC 4478455 1064551004261 IA1_21365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS ascorbate transporter subunit IIC YP_008615976.1 4477058 D 1064551 CDS YP_008615977.1 549481505 4478471..4478776 1 NC_022525.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS ascorbate transporter subunit IIB 4478776 1064551004262 IA1_21370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS ascorbate transporter subunit IIB YP_008615977.1 4478471 D 1064551 CDS YP_008615978.1 549481506 4478786..4479250 1 NC_022525.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS ascorbate transporter subunit IIA 4479250 1064551004263 IA1_21375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS ascorbate transporter subunit IIA YP_008615978.1 4478786 D 1064551 CDS YP_008615979.1 549481507 4479264..4479914 1 NC_022525.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-keto-L-gulonate-6-phosphate decarboxylase 4479914 ulaD 1064551004264 ulaD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3-keto-L-gulonate-6-phosphate decarboxylase YP_008615979.1 4479264 D 1064551 CDS YP_008615980.1 549482433 4479924..4480778 1 NC_022525.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; L-xylulose 5-phosphate 3-epimerase 4480778 1064551004265 IA1_21385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-xylulose 5-phosphate 3-epimerase YP_008615980.1 4479924 D 1064551 CDS YP_008615981.1 549481508 4480778..4481464 1 NC_022525.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ribulose-5-phosphate 4-epimerase 4481464 araD 1064551004266 araD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-ribulose-5-phosphate 4-epimerase YP_008615981.1 4480778 D 1064551 CDS YP_008615982.1 549482434 complement(4481595..4481855) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4481855 1064551004267 IA1_21395 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615982.1 4481595 R 1064551 CDS YP_008615983.1 549481509 4482341..4482736 1 NC_022525.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S6 4482736 rpsF 1064551004268 rpsF Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S6 YP_008615983.1 4482341 D 1064551 CDS YP_008615984.1 549482435 4482890..4483057 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; primosomal replication protein N 4483057 1064551004269 IA1_21405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 primosomal replication protein N YP_008615984.1 4482890 D 1064551 CDS YP_008615985.1 549481510 4483062..4483289 1 NC_022525.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S18 4483289 rpsR 1064551004270 rpsR Salmonella enterica subsp. enterica serovar Thompson str. RM6836 30S ribosomal protein S18 YP_008615985.1 4483062 D 1064551 CDS YP_008615986.1 549481511 4483331..4483780 1 NC_022525.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L9 4483780 rplI 1064551004271 rplI Salmonella enterica subsp. enterica serovar Thompson str. RM6836 50S ribosomal protein L9 YP_008615986.1 4483331 D 1064551 CDS YP_008615987.1 549481512 4483928..4484854 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT superfamliy metabolite exporter 4484854 1064551004272 IA1_21420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DMT superfamliy metabolite exporter YP_008615987.1 4483928 D 1064551 CDS YP_008615988.1 549481513 complement(4484904..4485539) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4485539 1064551004273 IA1_21425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615988.1 4484904 R 1064551 CDS YP_008615989.1 549481514 4485759..4486379 1 NC_022525.1 FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase 4486379 1064551004274 IA1_21430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidyl-prolyl cis-trans isomerase YP_008615989.1 4485759 D 1064551 CDS YP_008615990.1 549481515 4486675..4488084 1 NC_022525.1 involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine glycine permease 4488084 1064551004275 IA1_21435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alanine glycine permease YP_008615990.1 4486675 D 1064551 CDS YP_008615991.1 549481516 complement(4488196..4488858) 1 NC_022525.1 Involved in anaerobic NO protection and iron metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster repair di-iron protein 4488858 1064551004276 IA1_21440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron-sulfur cluster repair di-iron protein YP_008615991.1 4488196 R 1064551 CDS YP_008615992.1 549481517 complement(4488961..4489926) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4489926 1064551004277 IA1_21445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615992.1 4488961 R 1064551 CDS YP_008615993.1 549481518 complement(4490007..4490855) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; quinone oxidoreductase 4490855 1064551004278 IA1_21450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 quinone oxidoreductase YP_008615993.1 4490007 R 1064551 CDS YP_008615994.1 549481519 4490943..4491329 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; HxlR family transcriptional regulator 4491329 1064551004279 IA1_21455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 HxlR family transcriptional regulator YP_008615994.1 4490943 D 1064551 CDS YP_008615995.1 549481520 complement(4491387..4493330) 1 NC_022525.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3'-nucleotidase 4493330 cpdB 1064551004280 cpdB Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3'-nucleotidase YP_008615995.1 4491387 R 1064551 CDS YP_008615996.1 549481521 4493598..4494338 1 NC_022525.1 catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3'-5'-bisphosphate nucleotidase 4494338 1064551004281 IA1_21465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3'-5'-bisphosphate nucleotidase YP_008615996.1 4493598 D 1064551 CDS YP_008615997.1 549481522 complement(4494328..4494885) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4494885 1064551004282 IA1_21470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615997.1 4494328 R 1064551 CDS YP_008615998.1 549481523 4495213..4495419 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4495419 1064551004283 IA1_21475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008615998.1 4495213 D 1064551 CDS YP_008615999.1 549481524 complement(4495504..4496847) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4496847 1064551004284 IA1_21480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008615999.1 4495504 R 1064551 CDS YP_008616000.1 549482436 complement(4497030..4497668) 1 NC_022525.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; methionine sulfoxide reductase A 4497668 1064551004285 IA1_21485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methionine sulfoxide reductase A YP_008616000.1 4497030 R 1064551 CDS YP_008616001.1 549481525 4497881..4499614 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4499614 1064551004286 IA1_21490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616001.1 4497881 D 1064551 CDS YP_008616002.1 549481526 4499611..4503390 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4503390 1064551004287 IA1_21495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616002.1 4499611 D 1064551 CDS YP_008616003.1 549481527 4503393..4503737 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamylcyclotransferase 4503737 1064551004288 IA1_21500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 gamma-glutamylcyclotransferase YP_008616003.1 4503393 D 1064551 CDS YP_008616004.1 549481528 complement(4503791..4504999) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 4504999 1064551004289 IA1_21505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 permease YP_008616004.1 4503791 R 1064551 CDS YP_008616005.1 549481529 complement(4504996..4506159) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; metallo-dependent hydrolase 4506159 1064551004290 IA1_21510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 metallo-dependent hydrolase YP_008616005.1 4504996 R 1064551 CDS YP_008616006.1 549481530 complement(4506569..4507099) 1 NC_022525.1 catalyzes the hydrolysis of pyrophosphate to phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; inorganic pyrophosphatase 4507099 1064551004291 IA1_21515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 inorganic pyrophosphatase YP_008616006.1 4506569 R 1064551 CDS YP_008616007.1 549481531 complement(4507326..4508324) 1 NC_022525.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-1,6-bisphosphatase 4508324 1064551004292 IA1_21520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fructose-1,6-bisphosphatase YP_008616007.1 4507326 R 1064551 CDS YP_008616008.1 549481532 4508499..4509878 1 NC_022525.1 ligates L-alanyl-gamma-D-glutamyl-meso-diaminopimelate to UDP-N-acetylmuramic acid for reincorporation into peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4509878 1064551004293 IA1_21525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_008616008.1 4508499 D 1064551 CDS YP_008616009.1 549482437 complement(4509875..4510189) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4510189 1064551004294 IA1_21530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616009.1 4509875 R 1064551 CDS YP_008616010.1 549481533 4510369..4511202 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster assembly protein HesB 4511202 1064551004295 IA1_21535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 iron-sulfur cluster assembly protein HesB YP_008616010.1 4510369 D 1064551 CDS YP_008616011.1 549481534 complement(4511253..4512686) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 4512686 1064551004296 IA1_21540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MFS transporter YP_008616011.1 4511253 R 1064551 CDS YP_008616012.1 549482438 complement(4512914..4513108) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4513108 1064551004297 IA1_21545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616012.1 4512914 R 1064551 CDS YP_008616013.1 549481535 4513145..4514581 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 4514581 1064551004298 IA1_21550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 MFS transporter YP_008616013.1 4513145 D 1064551 CDS YP_008616014.1 549481536 complement(4514934..4515743) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-deoxyglucuronate isomerase 4515743 1064551004299 IA1_21555 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5-deoxyglucuronate isomerase YP_008616014.1 4514934 R 1064551 CDS YP_008616015.1 549481537 complement(4515768..4517273) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; methylmalonate-semialdehyde dehydrogenase 4517273 1064551004300 IA1_21560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methylmalonate-semialdehyde dehydrogenase YP_008616015.1 4515768 R 1064551 CDS YP_008616016.1 549481538 4517714..4518538 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 4518538 1064551004301 IA1_21565 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-binding protein YP_008616016.1 4517714 D 1064551 CDS YP_008616017.1 549481539 4518813..4519718 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; inosose dehydratase 4519718 1064551004302 IA1_21570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 inosose dehydratase YP_008616017.1 4518813 D 1064551 CDS YP_008616018.1 549481540 4519737..4520747 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; inositol 2-dehydrogenase 4520747 1064551004303 IA1_21575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 inositol 2-dehydrogenase YP_008616018.1 4519737 D 1064551 CDS YP_008616019.1 549481541 4520844..4522187 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; lysosomal glucosyl ceramidase 4522187 1064551004304 IA1_21580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lysosomal glucosyl ceramidase YP_008616019.1 4520844 D 1064551 CDS YP_008616020.1 549481542 4522188..4523021 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease 4523021 1064551004305 IA1_21585 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endonuclease YP_008616020.1 4522188 D 1064551 CDS YP_008616021.1 549481543 complement(4523018..4524184) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4524184 1064551004306 IA1_21590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616021.1 4523018 R 1064551 CDS YP_008616022.1 549482439 complement(4524245..4526176) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 5-dehydro-2-deoxygluconokinase 4526176 1064551004307 IA1_21595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 5-dehydro-2-deoxygluconokinase YP_008616022.1 4524245 R 1064551 CDS YP_008616023.1 549482440 complement(4526359..4526484) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4526484 1064551004308 IA1_21600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616023.1 4526359 R 1064551 CDS YP_008616024.1 549482441 4526599..4528539 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase 4528539 1064551004309 IA1_21605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase YP_008616024.1 4526599 D 1064551 CDS YP_008616025.1 549481544 4528720..4529742 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; myo-inositol 2-dehydrogenase 4529742 1064551004310 IA1_21610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 myo-inositol 2-dehydrogenase YP_008616025.1 4528720 D 1064551 CDS YP_008616026.1 549481545 4529815..4531041 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 4531041 1064551004311 IA1_21615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 permease YP_008616026.1 4529815 D 1064551 CDS YP_008616027.1 549481546 4531202..4532017 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4532017 1064551004312 IA1_21620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616027.1 4531202 D 1064551 CDS YP_008616028.1 549481547 4532070..4532954 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; protein iolH 4532954 1064551004313 IA1_21625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 protein iolH YP_008616028.1 4532070 D 1064551 CDS YP_008616029.1 549482442 complement(4533010..4533561) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4533561 1064551004314 IA1_21630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616029.1 4533010 R 1064551 CDS YP_008616030.1 549481548 4533657..4535009 1 NC_022525.1 protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase PmbA 4535009 pmbA 1064551004315 pmbA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptidase PmbA YP_008616030.1 4533657 D 1064551 CDS YP_008616031.1 549481549 4535108..4535494 1 NC_022525.1 electron transport protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome B562 4535494 1064551004316 IA1_21640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytochrome B562 YP_008616031.1 4535108 D 1064551 CDS YP_008616032.1 549482443 4535791..4536120 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycine dehydrogenase 4536120 1064551004317 IA1_21645 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glycine dehydrogenase YP_008616032.1 4535791 D 1064551 CDS YP_008616033.1 549481550 4536131..4536493 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4536493 1064551004318 IA1_21650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616033.1 4536131 D 1064551 CDS YP_008616034.1 549481551 4536493..4536795 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoplasmic protein 4536795 1064551004319 IA1_21655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cytoplasmic protein YP_008616034.1 4536493 D 1064551 CDS YP_008616035.1 549481552 4536818..4537594 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4537594 1064551004320 IA1_21660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616035.1 4536818 D 1064551 CDS YP_008616036.1 549481553 4537606..4538250 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4538250 1064551004321 IA1_21665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616036.1 4537606 D 1064551 CDS YP_008616037.1 549481554 4538309..4539442 1 NC_022525.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroorotase 4539442 1064551004322 IA1_21670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dihydroorotase YP_008616037.1 4538309 D 1064551 CDS YP_008616038.1 549481555 4539426..4540544 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; L-seryl-tRNA selenium transferase 4540544 1064551004323 IA1_21675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-seryl-tRNA selenium transferase YP_008616038.1 4539426 D 1064551 CDS YP_008616039.1 549481556 4541298..4543211 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription antiterminator BglG 4543211 1064551004325 IA1_21685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcription antiterminator BglG YP_008616039.1 4541298 D 1064551 CDS YP_008616040.1 549481557 4543289..4543531 1 NC_022525.1 Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional antitoxin/transcriptional repressor RelB 4543531 1064551004326 IA1_21690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 bifunctional antitoxin/transcriptional repressor RelB YP_008616040.1 4543289 D 1064551 CDS YP_008616041.1 549481558 4543521..4543805 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; RelE toxin 4543805 1064551004327 IA1_21695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RelE toxin YP_008616041.1 4543521 D 1064551 CDS YP_008616042.1 549481559 complement(4543809..4544273) 1 NC_022525.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; anaerobic ribonucleotide reductase-activating protein 4544273 1064551004328 IA1_21700 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 anaerobic ribonucleotide reductase-activating protein YP_008616042.1 4543809 R 1064551 CDS YP_008616043.1 549481560 complement(4544490..4546628) 1 NC_022525.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside triphosphate reductase 4546628 1064551004329 IA1_21705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ribonucleoside triphosphate reductase YP_008616043.1 4544490 R 1064551 CDS YP_008616044.1 549481561 complement(4547037..4548689) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose-6-phosphate hydrolase 4548689 1064551004330 IA1_21710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 trehalose-6-phosphate hydrolase YP_008616044.1 4547037 R 1064551 CDS YP_008616045.1 549482444 complement(4548739..4550157) 1 NC_022525.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS maltose transporter subunit IIBC 4550157 1064551004331 IA1_21715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS maltose transporter subunit IIBC YP_008616045.1 4548739 R 1064551 CDS YP_008616046.1 549481562 complement(4550295..4551242) 1 NC_022525.1 regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose repressor 4551242 treR 1064551004332 treR Salmonella enterica subsp. enterica serovar Thompson str. RM6836 trehalose repressor YP_008616046.1 4550295 R 1064551 CDS YP_008616047.1 549481563 4551626..4554334 1 NC_022525.1 P-type ATPase involved in magnesium influx; Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium-transporting ATPase 4554334 1064551004333 IA1_21725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 magnesium-transporting ATPase YP_008616047.1 4551626 D 1064551 CDS YP_008616048.1 549481564 complement(4554423..4554809) 1 NC_022525.1 has endoribonuclease activity on mRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; endoribonuclease L-PSP 4554809 1064551004334 IA1_21730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endoribonuclease L-PSP YP_008616048.1 4554423 R 1064551 CDS YP_008616049.1 549481565 complement(4554886..4555347) 1 NC_022525.1 involved in the allosteric regulation of aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate carbamoyltransferase regulatory subunit 4555347 1064551004335 IA1_21735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aspartate carbamoyltransferase regulatory subunit YP_008616049.1 4554886 R 1064551 CDS YP_008616050.1 549481566 complement(4555360..4556295) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate carbamoyltransferase catalytic subunit 4556295 1064551004336 IA1_21740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aspartate carbamoyltransferase catalytic subunit YP_008616050.1 4555360 R 1064551 CDS YP_008616051.1 549481567 complement(4556523..4557011) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ArgR family transcriptional regulator 4557011 1064551004337 IA1_21745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ArgR family transcriptional regulator YP_008616051.1 4556523 R 1064551 CDS YP_008616052.1 549482445 4557014..4557112 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4557112 1064551004338 IA1_21750 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616052.1 4557014 D 1064551 CDS YP_008616053.1 549481568 complement(4557198..4558601) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter 4558601 1064551004339 IA1_21755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 C4-dicarboxylate ABC transporter YP_008616053.1 4557198 R 1064551 CDS YP_008616054.1 549481569 complement(4558657..4559661) 1 NC_022525.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine carbamoyltransferase 4559661 1064551004340 IA1_21760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ornithine carbamoyltransferase YP_008616054.1 4558657 R 1064551 CDS YP_008616055.1 549481570 complement(4559773..4560705) 1 NC_022525.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamate kinase 4560705 1064551004341 IA1_21765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbamate kinase YP_008616055.1 4559773 R 1064551 CDS YP_008616056.1 549481571 complement(4560716..4561936) 1 NC_022525.1 catalyzes the degradation of arginine to citruline and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine deiminase 4561936 1064551004342 IA1_21770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 arginine deiminase YP_008616056.1 4560716 R 1064551 CDS YP_008616057.1 549481572 4562612..4563064 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; Toxin-antitoxin biofilm protein TabA 4563064 1064551004343 IA1_21775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Toxin-antitoxin biofilm protein TabA YP_008616057.1 4562612 D 1064551 CDS YP_008616058.1 549481573 complement(4563138..4564142) 1 NC_022525.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine carbamoyltransferase 4564142 1064551004344 IA1_21780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ornithine carbamoyltransferase YP_008616058.1 4563138 R 1064551 CDS YP_008616059.1 549481574 4564308..4564724 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; RNase E inhibitor protein 4564724 1064551004345 IA1_21785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNase E inhibitor protein YP_008616059.1 4564308 D 1064551 CDS YP_008616060.1 549481575 complement(4565781..4566269) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4566269 1064551004347 IA1_21795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616060.1 4565781 R 1064551 CDS YP_008616061.1 549481576 complement(4566376..4566879) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyltransferase 4566879 1064551004348 IA1_21800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 N-acetyltransferase YP_008616061.1 4566376 R 1064551 CDS YP_008616062.1 549481577 4567074..4568261 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4568261 1064551004349 IA1_21805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616062.1 4567074 D 1064551 CDS YP_008616063.1 549481578 complement(4568403..4571258) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; valyl-tRNA synthase 4571258 1064551004350 IA1_21810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 valyl-tRNA synthase YP_008616063.1 4568403 R 1064551 CDS YP_008616064.1 549481579 complement(4571258..4571701) 1 NC_022525.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit chi 4571701 1064551004351 IA1_21815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA polymerase III subunit chi YP_008616064.1 4571258 R 1064551 CDS YP_008616065.1 549481580 complement(4571838..4573349) 1 NC_022525.1 catalyzes the removal of N-terminal amino acids preferably from various peptides; a cyteinylglycinase, transcription regulator and site-specific recombination factor; Derived by automated computational analysis using gene prediction method: Protein Homology.; multifunctional aminopeptidase A 4573349 1064551004352 IA1_21820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multifunctional aminopeptidase A YP_008616065.1 4571838 R 1064551 CDS YP_008616066.1 549481581 4573744..4574844 1 NC_022525.1 with LptBGC is involved in lipopolysaccharide export; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide ABC transporter permease LptF 4574844 1064551004353 IA1_21825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipopolysaccharide ABC transporter permease LptF YP_008616066.1 4573744 D 1064551 CDS YP_008616067.1 549481582 4574844..4575926 1 NC_022525.1 with LptABCF is involved in the transport of lipopolysaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide ABC transporter permease 4575926 1064551004354 IA1_21830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipopolysaccharide ABC transporter permease YP_008616067.1 4574844 D 1064551 CDS YP_008616068.1 549481583 complement(4576122..4577120) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4577120 1064551004355 IA1_21835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008616068.1 4576122 R 1064551 CDS YP_008616069.1 549481584 complement(4577184..4578503) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fructuronate transporter 4578503 1064551004356 IA1_21840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fructuronate transporter YP_008616069.1 4577184 R 1064551 CDS YP_008616070.1 549481585 complement(4578565..4579329) 1 NC_022525.1 catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-deoxy-D-gluconate 3-dehydrogenase 4579329 1064551004357 IA1_21845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 2-deoxy-D-gluconate 3-dehydrogenase YP_008616070.1 4578565 R 1064551 CDS YP_008616071.1 549481586 complement(4579354..4580385) 1 NC_022525.1 NAD-binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-idonate 5-dehydrogenase 4580385 1064551004358 IA1_21850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 L-idonate 5-dehydrogenase YP_008616071.1 4579354 R 1064551 CDS YP_008616072.1 549481587 4580602..4581132 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; D-gluconate kinase 4581132 idnK 1064551004359 idnK Salmonella enterica subsp. enterica serovar Thompson str. RM6836 D-gluconate kinase YP_008616072.1 4580602 D 1064551 CDS YP_008616073.1 549481588 complement(4581160..4582179) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase 4582179 1064551004360 IA1_21860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alcohol dehydrogenase YP_008616073.1 4581160 R 1064551 CDS YP_008616074.1 549481589 4582676..4583926 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase 4583926 1064551004362 IA1_21870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 integrase YP_008616074.1 4582676 D 1064551 CDS YP_008616075.1 549482446 4584038..4584847 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4584847 1064551004363 IA1_21875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616075.1 4584038 D 1064551 CDS YP_008616076.1 549481590 4585014..4585229 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4585229 1064551004364 IA1_21880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616076.1 4585014 D 1064551 CDS YP_008616077.1 549482447 4585250..4585564 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4585564 1064551004365 IA1_21885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616077.1 4585250 D 1064551 CDS YP_008616078.1 549482448 4585994..4587049 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 4587049 1064551004366 IA1_21890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 integrase YP_008616078.1 4585994 D 1064551 CDS YP_008616079.1 549482449 4587042..4588352 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 4588352 1064551004367 IA1_21895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 integrase YP_008616079.1 4587042 D 1064551 CDS YP_008616080.1 549482450 4588349..4590223 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA-binding protein 4590223 1064551004368 IA1_21900 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA-binding protein YP_008616080.1 4588349 D 1064551 CDS YP_008616081.1 549482451 4590238..4590624 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4590624 1064551004369 IA1_21905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616081.1 4590238 D 1064551 CDS YP_008616082.1 549482452 4590712..4591149 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4591149 1064551004370 IA1_21910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616082.1 4590712 D 1064551 CDS YP_008616083.1 549482453 4591241..4591942 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4591942 1064551004371 IA1_21915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616083.1 4591241 D 1064551 CDS YP_008616084.1 549482454 complement(4592284..4592601) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4592601 1064551004372 IA1_21920 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616084.1 4592284 R 1064551 CDS YP_008616085.1 549482455 complement(4592621..4593007) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4593007 1064551004373 IA1_21925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616085.1 4592621 R 1064551 CDS YP_008616086.1 549482456 4593340..4593438 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4593438 1064551004374 IA1_21930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616086.1 4593340 D 1064551 CDS YP_008616087.1 549482457 complement(4593538..4594803) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; relaxase 4594803 1064551004375 IA1_21935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 relaxase YP_008616087.1 4593538 R 1064551 CDS YP_008616088.1 549482458 complement(4594772..4595212) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4595212 1064551004376 IA1_21940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616088.1 4594772 R 1064551 CDS YP_008616089.1 549482459 complement(4595616..4595795) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4595795 1064551004377 IA1_21945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616089.1 4595616 R 1064551 CDS YP_008616090.1 549482460 4595786..4596694 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4596694 1064551004378 IA1_21950 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616090.1 4595786 D 1064551 CDS YP_008616091.1 549482461 4596707..4597315 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4597315 1064551004379 IA1_21955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616091.1 4596707 D 1064551 CDS YP_008616092.1 549482462 complement(4597539..4598813) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; modification methylase 4598813 1064551004380 IA1_21960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 modification methylase YP_008616092.1 4597539 R 1064551 CDS YP_008616093.1 549482463 4598878..4600500 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4600500 1064551004381 IA1_21965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616093.1 4598878 D 1064551 CDS YP_008616094.1 549482464 complement(4600650..4601369) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4601369 1064551004382 IA1_21970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616094.1 4600650 R 1064551 CDS YP_008616095.1 549482465 4601814..4602689 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4602689 1064551004383 IA1_21975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616095.1 4601814 D 1064551 CDS YP_008616096.1 549481591 complement(4603168..4603893) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4603893 1064551004384 IA1_21980 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616096.1 4603168 R 1064551 CDS YP_008616097.1 549481592 complement(4604443..4606074) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; SAM-dependent methyltransferase 4606074 1064551004385 IA1_21985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 SAM-dependent methyltransferase YP_008616097.1 4604443 R 1064551 CDS YP_008616098.1 549481593 complement(4606079..4606336) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4606336 1064551004386 IA1_21990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616098.1 4606079 R 1064551 CDS YP_008616099.1 549482466 4606824..4607432 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4607432 1064551004387 IA1_21995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616099.1 4606824 D 1064551 CDS YP_008616100.1 549481594 4607784..4608695 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4608695 1064551004388 IA1_22000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616100.1 4607784 D 1064551 CDS YP_008616101.1 549482467 4608993..4609361 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4609361 1064551004389 IA1_22005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616101.1 4608993 D 1064551 CDS YP_008616102.1 549481595 complement(4609358..4610050) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; dienelactone hydrolase 4610050 1064551004390 IA1_22010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dienelactone hydrolase YP_008616102.1 4609358 R 1064551 CDS YP_008616103.1 549481596 4610382..4611155 1 NC_022525.1 regulates the expression of uxuBA; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4611155 1064551004391 IA1_22015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008616103.1 4610382 D 1064551 CDS YP_008616104.1 549481597 complement(4611156..4612169) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophanyl-tRNA synthetase 4612169 1064551004392 IA1_22020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 tryptophanyl-tRNA synthetase YP_008616104.1 4611156 R 1064551 CDS YP_008616105.1 549481598 4612970..4613416 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4613416 1064551004393 IA1_22025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616105.1 4612970 D 1064551 CDS YP_008616106.1 549481599 4613655..4614389 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate racemase 4614389 1064551004394 IA1_22030 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 aspartate racemase YP_008616106.1 4613655 D 1064551 CDS YP_008616107.1 549481600 complement(4614395..4615303) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; cell density-dependent motility repressor 4615303 1064551004395 IA1_22035 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 cell density-dependent motility repressor YP_008616107.1 4614395 R 1064551 CDS YP_008616108.1 549482468 complement(4615422..4616594) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; isoaspartyl dipeptidase 4616594 1064551004396 IA1_22040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 isoaspartyl dipeptidase YP_008616108.1 4615422 R 1064551 CDS YP_008616109.1 549481601 complement(4616607..4617068) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4617068 1064551004397 IA1_22045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616109.1 4616607 R 1064551 CDS YP_008616110.1 549482469 complement(4617065..4617736) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4617736 1064551004398 IA1_22050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616110.1 4617065 R 1064551 CDS YP_008616111.1 549481602 complement(4618609..4619793) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4619793 1064551004399 IA1_22055 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616111.1 4618609 R 1064551 CDS YP_008616112.1 549481603 complement(4620013..4621284) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4621284 1064551004400 IA1_22060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616112.1 4620013 R 1064551 CDS YP_008616113.1 549481604 complement(4621371..4622612) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 4622612 1064551004401 IA1_22065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 multidrug transporter YP_008616113.1 4621371 R 1064551 CDS YP_008616114.1 549481605 4623091..4624056 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4624056 1064551004402 IA1_22070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616114.1 4623091 D 1064551 CDS YP_008616115.1 549482470 complement(4624053..4624166) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4624166 1064551004403 IA1_22075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616115.1 4624053 R 1064551 CDS YP_008616116.1 549481606 4624237..4625607 1 NC_022525.1 in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate-semialdehyde dehdyrogenase 4625607 1064551004404 IA1_22080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 succinate-semialdehyde dehdyrogenase YP_008616116.1 4624237 D 1064551 CDS YP_008616117.1 549482471 4625812..4625976 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4625976 1064551004405 IA1_22085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616117.1 4625812 D 1064551 CDS YP_008616118.1 549482472 complement(4626053..4626973) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transporter 4626973 1064551004406 IA1_22090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transporter YP_008616118.1 4626053 R 1064551 CDS YP_008616119.1 549482473 4627109..4628962 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4628962 1064551004407 IA1_22095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616119.1 4627109 D 1064551 CDS YP_008616120.1 549482474 complement(4629007..4629327) 1 NC_022525.1 involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; endoribonuclease SymE 4629327 1064551004408 IA1_22100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 endoribonuclease SymE YP_008616120.1 4629007 R 1064551 CDS YP_008616121.1 549482475 complement(4629544..4631322) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4631322 1064551004409 IA1_22105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616121.1 4629544 R 1064551 CDS YP_008616122.1 549482476 complement(4631322..4632791) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; restriction endonuclease EcoEI subunit M 4632791 1064551004410 IA1_22110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 restriction endonuclease EcoEI subunit M YP_008616122.1 4631322 R 1064551 CDS YP_008616123.1 549482477 complement(4632862..4635291) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DEAD/DEAH box helicase 4635291 1064551004411 IA1_22115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DEAD/DEAH box helicase YP_008616123.1 4632862 R 1064551 CDS YP_008616124.1 549482478 4635433..4636401 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4636401 1064551004412 IA1_22120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616124.1 4635433 D 1064551 CDS YP_008616125.1 549481607 complement(4636517..4637473) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein YjiA 4637473 1064551004413 IA1_22125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 GTP-binding protein YjiA YP_008616125.1 4636517 R 1064551 CDS YP_008616126.1 549481608 complement(4637484..4637687) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4637687 1064551004414 IA1_22130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616126.1 4637484 R 1064551 CDS YP_008616127.1 549481609 complement(4637782..4639932) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon starvation protein CstA 4639932 1064551004415 IA1_22135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 carbon starvation protein CstA YP_008616127.1 4637782 R 1064551 CDS YP_008616128.1 549481610 4640299..4641960 1 NC_022525.1 serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein 4641960 1064551004416 IA1_22140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 methyl-accepting chemotaxis protein YP_008616128.1 4640299 D 1064551 CDS YP_008616129.1 549481611 4642284..4645049 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-54 dependent transcriptional regulator 4645049 1064551004417 IA1_22145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sigma-54 dependent transcriptional regulator YP_008616129.1 4642284 D 1064551 CDS YP_008616130.1 549481612 4645151..4645573 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter 4645573 1064551004418 IA1_22150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sugar transporter YP_008616130.1 4645151 D 1064551 CDS YP_008616131.1 549481613 4645588..4646049 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter 4646049 1064551004419 IA1_22155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sugar transporter YP_008616131.1 4645588 D 1064551 CDS YP_008616132.1 549481614 4646075..4646854 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter 4646854 1064551004420 IA1_22160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS sugar transporter YP_008616132.1 4646075 D 1064551 CDS YP_008616133.1 549481615 4646832..4647680 1 NC_022525.1 hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IID 4647680 1064551004421 IA1_22165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 PTS mannose transporter subunit IID YP_008616133.1 4646832 D 1064551 CDS YP_008616134.1 549481616 4647693..4648754 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosamine--fructose-6-phosphate aminotransferase 4648754 1064551004422 IA1_22170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucosamine--fructose-6-phosphate aminotransferase YP_008616134.1 4647693 D 1064551 CDS YP_008616135.1 549481617 4648772..4649782 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosamine--fructose-6-phosphate aminotransferase 4649782 1064551004423 IA1_22175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 glucosamine--fructose-6-phosphate aminotransferase YP_008616135.1 4648772 D 1064551 CDS YP_008616136.1 549481618 complement(4649916..4652207) 1 NC_022525.1 catalyzes the transfer of phosphoglycerol to the glucan backbone; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerol transferase 4652207 1064551004424 IA1_22180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoglycerol transferase YP_008616136.1 4649916 R 1064551 CDS YP_008616137.1 549481619 complement(4652490..4652951) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4652951 1064551004425 IA1_22185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616137.1 4652490 R 1064551 CDS YP_008616138.1 549481620 complement(4653009..4653746) 1 NC_022525.1 acts to load the DnaB helicase onto the initiation site during DNA replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA replication protein DnaC 4653746 1064551004426 IA1_22190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA replication protein DnaC YP_008616138.1 4653009 R 1064551 CDS YP_008616139.1 549481621 complement(4653749..4654288) 1 NC_022525.1 This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'; Derived by automated computational analysis using gene prediction method: Protein Homology.; primosomal protein DnaI 4654288 1064551004427 IA1_22195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 primosomal protein DnaI YP_008616139.1 4653749 R 1064551 CDS YP_008616140.1 549482479 complement(4654381..4654854) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4654854 1064551004428 IA1_22200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616140.1 4654381 R 1064551 CDS YP_008616141.1 549482480 complement(4654845..4655789) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4655789 1064551004429 IA1_22205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616141.1 4654845 R 1064551 CDS YP_008616142.1 549482481 4656334..4657059 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 4657059 1064551004430 IA1_22210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008616142.1 4656334 D 1064551 CDS YP_008616143.1 549481622 4657071..4657694 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4657694 1064551004431 IA1_22215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008616143.1 4657071 D 1064551 CDS YP_008616144.1 549481623 complement(4657745..4658203) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; prolyl-tRNA synthetase 4658203 1064551004432 IA1_22220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 prolyl-tRNA synthetase YP_008616144.1 4657745 R 1064551 CDS YP_008616145.1 549481624 complement(4658354..4659142) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; ferric iron reductase involved in ferric hydroximate transport 4659142 1064551004433 IA1_22225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 ferric iron reductase involved in ferric hydroximate transport YP_008616145.1 4658354 R 1064551 CDS YP_008616146.1 549481625 complement(4659263..4660327) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase 4660327 1064551004434 IA1_22230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 diguanylate cyclase YP_008616146.1 4659263 R 1064551 CDS YP_008616147.1 549481626 4660539..4660814 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4660814 1064551004435 IA1_22235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616147.1 4660539 D 1064551 CDS YP_008616148.1 549481627 complement(4661354..4662382) 1 NC_022525.1 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 4662382 rsmC 1064551004439 rsmC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 16S rRNA methyltransferase YP_008616148.1 4661354 R 1064551 CDS YP_008616149.1 549481628 4662485..4662922 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit psi 4662922 1064551004440 IA1_22260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA polymerase III subunit psi YP_008616149.1 4662485 D 1064551 CDS YP_008616150.1 549482482 4662867..4663313 1 NC_022525.1 alanine acetyltransferase that specifically acetylates ribosomal protein S18; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; alanine acetyltransferase 4663313 rimI 1064551004441 rimI Salmonella enterica subsp. enterica serovar Thompson str. RM6836 alanine acetyltransferase YP_008616150.1 4662867 D 1064551 CDS YP_008616151.1 549481629 4663335..4664012 1 NC_022525.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; Derived by automated computational analysis using gene prediction method: Protein Homology.; dUMP phosphatase 4664012 1064551004442 IA1_22270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 dUMP phosphatase YP_008616151.1 4663335 D 1064551 CDS YP_008616152.1 549481630 4664104..4665693 1 NC_022525.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 3 4665693 prfC 1064551004443 prfC Salmonella enterica subsp. enterica serovar Thompson str. RM6836 peptide chain release factor 3 YP_008616152.1 4664104 D 1064551 CDS YP_008616153.1 549481631 4666095..4666712 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4666712 1064551004444 IA1_22280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616153.1 4666095 D 1064551 CDS YP_008616154.1 549482483 4666841..4667002 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4667002 1064551004445 IA1_22285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616154.1 4666841 D 1064551 CDS YP_008616155.1 549481632 4667126..4668199 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4668199 1064551004446 IA1_22290 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616155.1 4667126 D 1064551 CDS YP_008616156.1 549482484 4668196..4668969 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; deoxyribonuclease 4668969 1064551004447 IA1_22295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 deoxyribonuclease YP_008616156.1 4668196 D 1064551 CDS YP_008616157.1 549481633 complement(4669002..4669865) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate formate lyase-activating enzyme 4669865 1064551004448 IA1_22300 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 pyruvate formate lyase-activating enzyme YP_008616157.1 4669002 R 1064551 CDS YP_008616158.1 549481634 complement(4669837..4671387) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4671387 1064551004449 IA1_22305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616158.1 4669837 R 1064551 CDS YP_008616159.1 549481635 4671629..4672426 1 NC_022525.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyribose-phosphate aldolase 4672426 1064551004450 IA1_22310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 deoxyribose-phosphate aldolase YP_008616159.1 4671629 D 1064551 CDS YP_008616160.1 549481636 4672550..4673872 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidine phosphorylase 4673872 1064551004451 IA1_22315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 thymidine phosphorylase YP_008616160.1 4672550 D 1064551 CDS YP_008616161.1 549481637 4673924..4675147 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopentomutase 4675147 1064551004452 IA1_22320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphopentomutase YP_008616161.1 4673924 D 1064551 CDS YP_008616162.1 549481638 4675357..4676076 1 NC_022525.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; purine nucleoside phosphorylase 4676076 deoD 1064551004453 deoD Salmonella enterica subsp. enterica serovar Thompson str. RM6836 purine nucleoside phosphorylase YP_008616162.1 4675357 D 1064551 CDS YP_008616163.1 549482485 complement(4676114..4676686) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4676686 1064551004454 IA1_22330 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616163.1 4676114 R 1064551 CDS YP_008616164.1 549481639 complement(4676683..4679091) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 4679091 1064551004455 IA1_22335 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein YP_008616164.1 4676683 R 1064551 CDS YP_008616165.1 549481640 complement(4679105..4679812) 1 NC_022525.1 member of the periplasmic pilus chaperone family of proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 4679812 1064551004456 IA1_22340 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein YP_008616165.1 4679105 R 1064551 CDS YP_008616166.1 549481641 complement(4679890..4680579) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4680579 1064551004457 IA1_22345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616166.1 4679890 R 1064551 CDS YP_008616167.1 549481642 complement(4680627..4681316) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4681316 1064551004458 IA1_22350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616167.1 4680627 R 1064551 CDS YP_008616168.1 549481643 complement(4681629..4682645) 1 NC_022525.1 Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoate-protein ligase A 4682645 lplA 1064551004459 lplA Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lipoate-protein ligase A YP_008616168.1 4681629 R 1064551 CDS YP_008616169.1 549481644 complement(4682679..4683323) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4683323 1064551004460 IA1_22360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616169.1 4682679 R 1064551 CDS YP_008616170.1 549481645 4683440..4684408 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 4684408 1064551004461 IA1_22365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hydrolase YP_008616170.1 4683440 D 1064551 CDS YP_008616171.1 549481646 4684492..4685874 1 NC_022525.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair protein RadA 4685874 1064551004462 IA1_22370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 DNA repair protein RadA YP_008616171.1 4684492 D 1064551 CDS YP_008616172.1 549481647 4685998..4687257 1 NC_022525.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside; also has a regulatory function; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4687257 1064551004463 IA1_22375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008616172.1 4685998 D 1064551 CDS YP_008616173.1 549481648 complement(4687375..4689042) 1 NC_022525.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter ATP-binding protein 4689042 1064551004464 IA1_22380 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 heme ABC transporter ATP-binding protein YP_008616173.1 4687375 R 1064551 CDS YP_008616174.1 549481649 4689251..4691188 1 NC_022525.1 catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic murein transglycosylase 4691188 1064551004465 IA1_22385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 lytic murein transglycosylase YP_008616174.1 4689251 D 1064551 CDS YP_008616175.1 549481650 4691246..4691572 1 NC_022525.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Derived by automated computational analysis using gene prediction method: Protein Homology.; Trp operon repressor 4691572 1064551004466 IA1_22390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Trp operon repressor YP_008616175.1 4691246 D 1064551 CDS YP_008616176.1 549481651 complement(4691674..4692189) 1 NC_022525.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; Derived by automated computational analysis using gene prediction method: Protein Homology.; inosine/xanthosine triphosphatase 4692189 yjjX 1064551004467 yjjX Salmonella enterica subsp. enterica serovar Thompson str. RM6836 inosine/xanthosine triphosphatase YP_008616176.1 4691674 R 1064551 CDS YP_008616177.1 549481652 4692238..4692885 1 NC_022525.1 catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerate mutase 4692885 1064551004468 IA1_22400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 phosphoglycerate mutase YP_008616177.1 4692238 D 1064551 CDS YP_008616178.1 549481653 complement(4692882..4693751) 1 NC_022525.1 AraC family; binds to the right arm of the replication origin oriC; Derived by automated computational analysis using gene prediction method: Protein Homology.; right origin-binding protein 4693751 1064551004469 IA1_22405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 right origin-binding protein YP_008616178.1 4692882 R 1064551 CDS YP_008616179.1 549481654 4693963..4694436 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4694436 1064551004470 IA1_22410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616179.1 4693963 D 1064551 CDS YP_008616180.1 549481655 4694449..4695138 1 NC_022525.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4695138 1064551004471 IA1_22415 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008616180.1 4694449 D 1064551 CDS YP_008616181.1 549481656 4695138..4696562 1 NC_022525.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase 4696562 1064551004472 IA1_22420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 sensory histidine kinase YP_008616181.1 4695138 D 1064551 CDS YP_008616182.1 549481657 4696620..4697969 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4697969 1064551004473 IA1_22425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616182.1 4696620 D 1064551 CDS YP_008616183.1 549481658 complement(4698027..4699112) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; major fimbrial protein SthE 4699112 1064551004474 IA1_22430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 major fimbrial protein SthE YP_008616183.1 4698027 R 1064551 CDS YP_008616184.1 549481659 complement(4699153..4699710) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein SthD 4699710 1064551004475 IA1_22435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein SthD YP_008616184.1 4699153 R 1064551 CDS YP_008616185.1 549481660 complement(4699728..4702265) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial outer membrane usher protein SthC 4702265 1064551004476 IA1_22440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial outer membrane usher protein SthC YP_008616185.1 4699728 R 1064551 CDS YP_008616186.1 549481661 complement(4702311..4702994) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial assembly chaperone 4702994 1064551004477 IA1_22445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial assembly chaperone YP_008616186.1 4702311 R 1064551 CDS YP_008616187.1 549481662 complement(4703065..4703610) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein SthA 4703610 1064551004478 IA1_22450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 fimbrial protein SthA YP_008616187.1 4703065 R 1064551 CDS YP_008616188.1 549481663 complement(4703949..4704620) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4704620 1064551004479 IA1_22455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 membrane protein YP_008616188.1 4703949 R 1064551 CDS YP_008616189.1 549482486 complement(4705005..4705319) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4705319 1064551004480 IA1_22460 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 hypothetical protein YP_008616189.1 4705005 R 1064551 CDS YP_008616190.1 549481664 complement(4705586..4706302) 1 NC_022525.1 Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4706302 1064551004481 IA1_22465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 transcriptional regulator YP_008616190.1 4705586 R 1064551 CDS YP_008616191.1 549481665 4706938..4707624 1 NC_022525.1 member of the SPOUT superfamily of methyltransferases; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA methyltransferase 4707624 1064551004482 IA1_22470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 RNA methyltransferase YP_008616191.1 4706938 D 1064551 CDS