-- dump date 20140620_054546 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 1064551000001 SEQ_END SEQ_END NC_022525.1 4707648 4707648 DR NC_022525.1; contig end 4707648..4707648 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611835.1 CDS thrA NC_022525.1 338 2800 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional aspartokinase I/homoserine dehydrogenase I 338..2800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611836.1 CDS IA1_00010 NC_022525.1 2802 3731 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; homoserine kinase 2802..3731 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611837.1 CDS IA1_00015 NC_022525.1 3735 5021 D Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine synthase 3735..5021 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611838.1 CDS IA1_00020 NC_022525.1 5115 5888 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(5115..5888) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611839.1 CDS IA1_00025 NC_022525.1 5967 7397 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:alanine symporter complement(5967..7397) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611840.1 CDS IA1_00030 NC_022525.1 7666 8619 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transaldolase 7666..8619 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611841.1 CDS mogA NC_022525.1 8730 9320 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum cofactor biosynthesis protein MogA 8730..9320 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611842.1 CDS IA1_00040 NC_022525.1 9377 9943 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(9377..9943) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611843.1 CDS IA1_00045 NC_022525.1 10093 10806 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(10093..10806) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611844.1 CDS IA1_00050 NC_022525.1 10842 11246 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(10842..11246) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611845.1 CDS IA1_00055 NC_022525.1 11245 11478 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 11245..11478 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611846.1 CDS dnaK NC_022525.1 11595 13511 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone DnaK 11595..13511 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611847.1 CDS IA1_00065 NC_022525.1 13597 14736 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone DnaJ 13597..14736 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611848.1 CDS IA1_00070 NC_022525.1 15017 15964 D Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 15017..15964 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611849.1 CDS IA1_00075 NC_022525.1 16091 16435 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 16091..16435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611850.1 CDS IA1_00080 NC_022525.1 16496 17029 R Derived by automated computational analysis using gene prediction method: Protein Homology.; secretion activating protein complement(16496..17029) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611851.1 CDS IA1_00085 NC_022525.1 17046 17489 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(17046..17489) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611852.1 CDS IA1_00090 NC_022525.1 17870 19969 D Derived by automated computational analysis using gene prediction method: Protein Homology.; chitinase 17870..19969 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611853.1 CDS IA1_00095 NC_022525.1 20061 23057 D Derived by automated computational analysis using gene prediction method: Protein Homology.; chitinase 20061..23057 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611854.1 CDS IA1_00100 NC_022525.1 23338 24042 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 23338..24042 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611855.1 CDS IA1_00105 NC_022525.1 24472 25014 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein BcfA 24472..25014 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611856.1 CDS IA1_00110 NC_022525.1 25115 25801 D fimbrial protein chaperone; interacts with BcfD; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone protein BcfB 25115..25801 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611857.1 CDS IA1_00115 NC_022525.1 25806 28427 D involved in fimbria production; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane usher protein 25806..28427 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611858.1 CDS IA1_00120 NC_022525.1 28428 29435 D involved in the regulation of length and mediates adhesion; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein BcfD 28428..29435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611859.1 CDS IA1_00125 NC_022525.1 29436 29981 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein BcfE 29436..29981 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611860.1 CDS IA1_00130 NC_022525.1 29997 30515 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein BcfF 29997..30515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611861.1 CDS IA1_00135 NC_022525.1 30481 31212 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone 30481..31212 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611862.1 CDS IA1_00140 NC_022525.1 31276 32121 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol-disulfide isomerase 31276..32121 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611863.1 CDS IA1_00145 NC_022525.1 32160 32447 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 32160..32447 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611864.1 CDS IA1_00150 NC_022525.1 32547 32996 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(32547..32996) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611865.1 CDS IA1_00155 NC_022525.1 33366 34361 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LysR family transcriptional regulator 33366..34361 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611866.1 CDS IA1_00160 NC_022525.1 34378 34818 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(34378..34818) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611867.1 CDS IA1_00165 NC_022525.1 35341 37059 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arylsulfatase 35341..37059 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611868.1 CDS IA1_00170 NC_022525.1 37105 38667 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-nucleotidase complement(37105..38667) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611869.1 CDS IA1_00175 NC_022525.1 38775 39536 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(38775..39536) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611870.1 CDS IA1_00180 NC_022525.1 40131 41624 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arylsulfatase 40131..41624 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611871.1 CDS IA1_00185 NC_022525.1 41723 42913 D Derived by automated computational analysis using gene prediction method: Protein Homology.; anaerobic sulfatase maturase 41723..42913 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611872.1 CDS IA1_00190 NC_022525.1 42932 44194 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 42932..44194 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611873.1 CDS IA1_00195 NC_022525.1 44191 44313 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(44191..44313) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611874.1 CDS IA1_00200 NC_022525.1 44312 46027 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arylsulfatase 44312..46027 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611875.1 CDS nhaA NC_022525.1 46190 47356 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 46190..47356 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611876.1 CDS nhaR NC_022525.1 47418 48317 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 47418..48317 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611877.1 CDS IA1_00215 NC_022525.1 48372 50411 R Derived by automated computational analysis using gene prediction method: Protein Homology.; family 31 glucosidase complement(48372..50411) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611878.1 CDS IA1_00220 NC_022525.1 50451 51824 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sodium:solute symporter complement(50451..51824) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611879.1 CDS IA1_00225 NC_022525.1 52280 52465 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 30S ribosomal protein S20 complement(52280..52465) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611880.1 CDS IA1_00230 NC_022525.1 52872 53810 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional riboflavin kinase/FMN adenylyltransferase 52872..53810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611881.1 CDS ileS NC_022525.1 53819 56689 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; isoleucyl-tRNA synthetase 53819..56689 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611882.1 CDS lspA NC_022525.1 56689 57189 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein signal peptidase 56689..57189 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611883.1 CDS IA1_00245 NC_022525.1 57344 57793 D rotamase; accelerates isomerization of the peptidyl prolyl bond, involved in the folding of proteases; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase 57344..57793 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611884.1 CDS ispH NC_022525.1 57796 58746 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 57796..58746 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611885.1 CDS IA1_00255 NC_022525.1 58946 60148 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite reductase 58946..60148 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611886.1 CDS IA1_00260 NC_022525.1 60164 61084 D catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside hydrolase 60164..61084 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611887.1 CDS IA1_00265 NC_022525.1 61106 61792 R Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheY complement(61106..61792) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611888.1 CDS dpiB NC_022525.1 61794 63452 R regulates the expression of citrate fermentation genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase DpiB complement(61794..63452) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611889.1 CDS IA1_00275 NC_022525.1 63548 64849 R catalyzes the formation of pyruvate from oxaloacetate; sodium translocating; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase subunit beta complement(63548..64849) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611890.1 CDS IA1_00280 NC_022525.1 64862 66631 R catalyzes the formation of pyruvate from oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase complement(64862..66631) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611891.1 CDS IA1_00285 NC_022525.1 66647 66886 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase subunit gamma complement(66647..66886) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611892.1 CDS IA1_00290 NC_022525.1 67045 68385 R Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate:sodium symporter complement(67045..68385) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611893.1 CDS IA1_00300 NC_022525.1 69702 69995 D Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit gamma 69702..69995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611894.1 CDS IA1_00305 NC_022525.1 69992 70861 D citryl-ACP lyase; catalyzes the formation of acetate and oxaloacetate from citrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit beta 69992..70861 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611895.1 CDS IA1_00310 NC_022525.1 70872 72392 D citrate-ACP transferase, the alpha subunit catalyzes the formation of (3S)-citryl-CoA from acetyl-CoA and citrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit alpha 70872..72392 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611896.1 CDS IA1_00315 NC_022525.1 72392 72943 D Derived by automated computational analysis using gene prediction method: Protein Homology.; apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 72392..72943 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611897.1 CDS IA1_00320 NC_022525.1 72921 73829 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase 72921..73829 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611898.1 CDS IA1_00325 NC_022525.1 74009 74830 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrodipicolinate reductase 74009..74830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611899.1 CDS IA1_00330 NC_022525.1 74958 75233 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; viral protein complement(74958..75233) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611900.1 CDS IA1_00335 NC_022525.1 75872 77020 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamoyl phosphate synthase small subunit 75872..77020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611901.1 CDS carB NC_022525.1 77039 80266 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamoyl phosphate synthase large subunit 77039..80266 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611902.1 CDS IA1_00345 NC_022525.1 80540 80935 D regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 80540..80935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611903.1 CDS IA1_00350 NC_022525.1 81013 81609 R involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; carnitine operon protein CaiE complement(81013..81609) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611904.1 CDS IA1_00355 NC_022525.1 81718 82503 R catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; carnitinyl-CoA dehydratase complement(81718..82503) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611905.1 CDS IA1_00360 NC_022525.1 82557 84110 R Derived by automated computational analysis using gene prediction method: Protein Homology.; carnitine-CoA ligase complement(82557..84110) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611906.1 CDS IA1_00365 NC_022525.1 84173 85390 R catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; crotonobetainyl-CoA:carnitine CoA-transferase complement(84173..85390) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611907.1 CDS IA1_00370 NC_022525.1 85502 86644 R catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; crotonobetainyl-CoA dehydrogenase complement(85502..86644) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611908.1 CDS IA1_00375 NC_022525.1 86679 88196 R catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter complement(86679..88196) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611909.1 CDS IA1_00385 NC_022525.1 88677 89447 D required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein FixB 88677..89447 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611910.1 CDS fixB NC_022525.1 89463 90404 D involved in electron transfer during carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein subunit alpha 89463..90404 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611911.1 CDS IA1_00395 NC_022525.1 90454 91740 D FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase FixC 90454..91740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611912.1 CDS IA1_00400 NC_022525.1 91737 92024 D necessary for anaerobic carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin FixX 91737..92024 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611913.1 CDS IA1_00405 NC_022525.1 92105 93511 D Derived by automated computational analysis using gene prediction method: Protein Homology.; metabolite transporter 92105..93511 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611914.1 CDS IA1_00410 NC_022525.1 93600 93830 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 93600..93830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611915.1 CDS IA1_00415 NC_022525.1 94116 94538 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 94116..94538 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611916.1 CDS IA1_00420 NC_022525.1 94762 95052 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(94762..95052) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611917.1 CDS IA1_00425 NC_022525.1 95950 97839 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatase/sulfatase 95950..97839 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611918.1 CDS IA1_00430 NC_022525.1 98245 98775 D Required for full activity of KefC, a potassium-proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter 98245..98775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611919.1 CDS IA1_00435 NC_022525.1 98768 100630 D transport system that facilitates potassium-efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter 98768..100630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611920.1 CDS folA NC_022525.1 100829 101308 D catalyzes the reduction of dihydrofolate to tetrahydrofolate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrofolate reductase 100829..101308 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611921.1 CDS apaH NC_022525.1 101414 102262 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; diadenosine tetraphosphatase complement(101414..102262) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611922.1 CDS apaG NC_022525.1 102273 102650 R protein associated with Co2+ and Mg2+ efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt transporter complement(102273..102650) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611923.1 CDS ksgA NC_022525.1 102653 103474 R in Escherichia coli this enzyme catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; members of this protein family have secondary functions; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase complement(102653..103474) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611924.1 CDS pdxA NC_022525.1 103471 104460 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxythreonine-4-phosphate dehydrogenase complement(103471..104460) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611925.1 CDS IA1_00465 NC_022525.1 104460 105746 R Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(104460..105746) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611926.1 CDS IA1_00470 NC_022525.1 105800 108160 R is involved in outer membrane permeability; Derived by automated computational analysis using gene prediction method: Protein Homology.; LPS assembly outer membrane complex protein LptD complement(105800..108160) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611927.1 CDS djlA NC_022525.1 108414 109226 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone DnaJ 108414..109226 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611928.1 CDS IA1_00480 NC_022525.1 109321 109980 R catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA/tRNA pseudouridine synthase A complement(109321..109980) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611929.1 CDS IA1_00485 NC_022525.1 109992 112898 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent helicase complement(109992..112898) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611930.1 CDS IA1_00490 NC_022525.1 113072 115423 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase II complement(113072..115423) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611931.1 CDS IA1_00495 NC_022525.1 115467 116087 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(115467..116087) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611932.1 CDS IA1_00500 NC_022525.1 116605 117024 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 116605..117024 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611933.1 CDS araD NC_022525.1 117030 117725 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ribulose-5-phosphate 4-epimerase complement(117030..117725) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611934.1 CDS IA1_00510 NC_022525.1 117866 119368 R catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose isomerase complement(117866..119368) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611935.1 CDS IA1_00515 NC_022525.1 119379 121088 R catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribulokinase complement(119379..121088) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611936.1 CDS IA1_00520 NC_022525.1 121429 122274 D positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 121429..122274 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611937.1 CDS IA1_00525 NC_022525.1 122393 123160 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 122393..123160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611938.1 CDS IA1_00530 NC_022525.1 123199 123906 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine ABC transporter ATP-binding protein complement(123199..123906) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611939.1 CDS thiP NC_022525.1 123890 125500 R permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine transporter membrane protein complement(123890..125500) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611940.1 CDS tbpA NC_022525.1 125476 126459 R part of the thiamine and TPP transport system tbpA-thiPQ; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine ABC transporter substrate-binding protein complement(125476..126459) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611941.1 CDS IA1_00545 NC_022525.1 126637 128295 R activates sgrS under glucose-phosphate stress conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(126637..128295) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611942.1 CDS IA1_00550 NC_022525.1 128388 128510 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; inhibitor of glucose transporter 128388..128510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611943.1 CDS IA1_00555 NC_022525.1 128830 129111 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 128830..129111 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611944.1 CDS leuD NC_022525.1 129165 129770 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; Derived by automated computational analysis using gene prediction method: Protein Homology.; isopropylmalate isomerase complement(129165..129770) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611945.1 CDS IA1_00565 NC_022525.1 129781 131181 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydratase large subunit complement(129781..131181) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611946.1 CDS IA1_00570 NC_022525.1 131184 132275 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydrogenase complement(131184..132275) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611947.1 CDS IA1_00575 NC_022525.1 132275 133846 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-isopropylmalate synthase complement(132275..133846) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611948.1 CDS leuO NC_022525.1 134677 135621 D activator for leuABCD operon; member of LysR family of transcriptional activators; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucine transcriptional activator 134677..135621 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611949.1 CDS IA1_00585 NC_022525.1 135967 137667 D catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 135967..137667 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611950.1 CDS ilvH NC_022525.1 137667 138161 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 137667..138161 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611951.1 CDS IA1_00595 NC_022525.1 138445 139449 D binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 138445..139449 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611952.1 CDS IA1_00600 NC_022525.1 140055 140513 D MraZ; UPF0040; crystal structure shows similarity to AbrB; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein MraZ 140055..140513 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611953.1 CDS IA1_00605 NC_022525.1 140515 141456 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 140515..141456 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611954.1 CDS IA1_00610 NC_022525.1 141453 141818 D membrane bound cell division protein at septum containing leucine zipper motif; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cell division protein FtsL 141453..141818 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611955.1 CDS IA1_00615 NC_022525.1 141834 143600 D penicillin-binding protein 3; transpeptidase involved in septal peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsI 141834..143600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611956.1 CDS murE NC_022525.1 143587 145074 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 143587..145074 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611957.1 CDS murF NC_022525.1 145071 146429 D Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 145071..146429 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611958.1 CDS mraY NC_022525.1 146423 147505 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-N-acetylmuramoyl-pentapeptide- transferase 146423..147505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611959.1 CDS murD NC_022525.1 147508 148824 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 147508..148824 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611960.1 CDS IA1_00640 NC_022525.1 148824 150068 D integral membrane protein involved in stabilizing FstZ ring during cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsW 148824..150068 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611961.1 CDS murG NC_022525.1 150065 151132 D N-acetylglucosaminyl transferase; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-diphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 150065..151132 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611962.1 CDS murC NC_022525.1 151251 152726 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramate--alanine ligase 151251..152726 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611963.1 CDS ddl NC_022525.1 152719 153639 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanine--D-alanine ligase 152719..153639 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611964.1 CDS IA1_00660 NC_022525.1 153641 154471 D involved in septum formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsQ 153641..154471 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611965.1 CDS ftsA NC_022525.1 154468 155730 D ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsA 154468..155730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611966.1 CDS IA1_00670 NC_022525.1 155791 156942 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M23 155791..156942 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611967.1 CDS lpxC NC_022525.1 157043 157960 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 157043..157960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611968.1 CDS IA1_00680 NC_022525.1 158238 158735 D secM translational pause allows for the initiation of secA translation; Derived by automated computational analysis using gene prediction method: Protein Homology.; SecA regulator SecM 158238..158735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611969.1 CDS secA NC_022525.1 158797 161502 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecA 158797..161502 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611970.1 CDS IA1_00690 NC_022525.1 161658 162053 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate pyrophosphohydrolase 161658..162053 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611971.1 CDS IA1_00695 NC_022525.1 162087 163076 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aldo/keto reductase complement(162087..163076) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611972.1 CDS IA1_00700 NC_022525.1 163180 164103 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LysR family transcriptional regulator 163180..164103 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611973.1 CDS IA1_00705 NC_022525.1 164100 164291 R inhibits supercoiling by DNA gyrase by binding to the GyrB subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase inhibitor complement(164100..164291) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611974.1 CDS IA1_00710 NC_022525.1 164301 165044 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(164301..165044) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611975.1 CDS coaE NC_022525.1 165044 165664 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; dephospho-CoA kinase complement(165044..165664) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611976.1 CDS IA1_00720 NC_022525.1 165890 166933 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; guanosine 5'-monophosphate oxidoreductase 165890..166933 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611977.1 CDS IA1_00725 NC_022525.1 166964 168166 R Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV pilin biogenesis protein complement(166964..168166) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611978.1 CDS IA1_00730 NC_022525.1 168156 169541 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(168156..169541) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611979.1 CDS IA1_00735 NC_022525.1 169551 169988 R Derived by automated computational analysis using gene prediction method: Protein Homology.; major pilin subunit complement(169551..169988) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611980.1 CDS IA1_00740 NC_022525.1 170210 171103 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinate-nucleotide pyrophosphorylase complement(170210..171103) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611981.1 CDS IA1_00745 NC_022525.1 171191 171754 D Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyl-anhydromuranmyl-L-alanine amidase 171191..171754 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611982.1 CDS IA1_00750 NC_022525.1 171751 172605 D involved in regulation of beta-lactamase; putative signaling protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 171751..172605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611983.1 CDS IA1_00755 NC_022525.1 172697 173647 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-N-arabinofuranosidase complement(172697..173647) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611984.1 CDS IA1_00760 NC_022525.1 173647 175053 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GPH family transporter complement(173647..175053) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611985.1 CDS IA1_00765 NC_022525.1 175217 176590 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid transporter complement(175217..176590) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611986.1 CDS pdhR NC_022525.1 177153 177917 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 177153..177917 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611987.1 CDS aceE NC_022525.1 178077 180740 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate dehydrogenase 178077..180740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611988.1 CDS aceF NC_022525.1 180755 182644 D E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoamide acetyltransferase 180755..182644 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611989.1 CDS IA1_00785 NC_022525.1 182845 184269 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoamide dehydrogenase 182845..184269 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611990.1 CDS IA1_00790 NC_022525.1 184352 184450 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(184352..184450) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611991.1 CDS IA1_00795 NC_022525.1 184558 184842 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 184558..184842 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611992.1 CDS IA1_00800 NC_022525.1 184880 185671 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(184880..185671) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611993.1 CDS IA1_00805 NC_022525.1 185684 187306 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(185684..187306) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611994.1 CDS IA1_00810 NC_022525.1 187695 190292 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 187695..190292 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611995.1 CDS IA1_00815 NC_022525.1 190324 191295 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(190324..191295) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611996.1 CDS IA1_00820 NC_022525.1 191368 192456 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 191368..192456 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611997.1 CDS IA1_00825 NC_022525.1 192568 192747 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 192568..192747 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611998.1 CDS IA1_00830 NC_022525.1 192813 193745 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(192813..193745) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008611999.1 CDS IA1_00835 NC_022525.1 193820 194983 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 193820..194983 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612000.1 CDS IA1_00840 NC_022525.1 194985 195164 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aconitate hydratase 194985..195164 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612001.1 CDS IA1_00845 NC_022525.1 195204 195668 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(195204..195668) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612002.1 CDS IA1_00850 NC_022525.1 196078 196401 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphotyrosine protein phosphatase complement(196078..196401) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612003.1 CDS IA1_00855 NC_022525.1 196672 197034 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 196672..197034 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612004.1 CDS IA1_00860 NC_022525.1 197271 198224 D transports degraded pectin products into the bacterial cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxygluconate permease 197271..198224 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612005.1 CDS IA1_00865 NC_022525.1 198221 199492 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 198221..199492 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612006.1 CDS pdxA NC_022525.1 199482 200465 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxythreonine-4-phosphate dehydrogenase 199482..200465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612007.1 CDS IA1_00875 NC_022525.1 200475 201242 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 200475..201242 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612008.1 CDS IA1_00880 NC_022525.1 201272 202066 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine decarboxylase complement(201272..202066) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612009.1 CDS IA1_00885 NC_022525.1 202087 202947 R Derived by automated computational analysis using gene prediction method: Protein Homology.; spermidine synthase complement(202087..202947) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612010.1 CDS IA1_00890 NC_022525.1 203054 203401 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(203054..203401) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612011.1 CDS IA1_00895 NC_022525.1 203603 205213 D laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; Derived by automated computational analysis using gene prediction method: Protein Homology.; multicopper oxidase 203603..205213 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612012.1 CDS IA1_00900 NC_022525.1 205291 207681 R quinoprotein glucose dehydrogenase; catalyzes the formation of D-glucono-1,5-lactone from D-glucose and ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose dehydrogenase complement(205291..207681) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612013.1 CDS IA1_00905 NC_022525.1 207887 208423 D catalyzes the formation of inosine monophosphate from hypoxanthine and 5-phospho-alpha-D-ribose 1-diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypoxanthine phosphoribosyltransferase 207887..208423 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612014.1 CDS IA1_00910 NC_022525.1 208481 209143 R catalyzes the interconversion of bicarbonate and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbonic anhydrase complement(208481..209143) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612015.1 CDS IA1_00915 NC_022525.1 209252 210178 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein 209252..210178 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612016.1 CDS IA1_00920 NC_022525.1 210175 210945 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 210175..210945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612017.1 CDS IA1_00925 NC_022525.1 211062 212141 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein StiH complement(211062..212141) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612018.1 CDS IA1_00930 NC_022525.1 212150 214696 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial outer membrane usher protein SthC complement(212150..214696) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612019.1 CDS IA1_00935 NC_022525.1 214723 215406 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial assembly chaperone complement(214723..215406) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612020.1 CDS IA1_00940 NC_022525.1 215454 215993 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein StiA complement(215454..215993) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612021.1 CDS IA1_00945 NC_022525.1 216363 216803 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIA 216363..216803 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612022.1 CDS IA1_00950 NC_022525.1 216865 218094 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 216865..218094 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612023.1 CDS IA1_00955 NC_022525.1 218096 219157 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein complement(218096..219157) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612024.1 CDS IA1_00960 NC_022525.1 219169 219768 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein complement(219169..219768) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612025.1 CDS IA1_00965 NC_022525.1 219787 220344 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein complement(219787..220344) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612026.1 CDS IA1_00970 NC_022525.1 220371 220943 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein complement(220371..220943) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612027.1 CDS IA1_00975 NC_022525.1 220978 223575 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial outer membrane usher protein complement(220978..223575) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612028.1 CDS IA1_00980 NC_022525.1 223643 224395 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial assembly chaperone protein StcB complement(223643..224395) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612029.1 CDS IA1_00985 NC_022525.1 224482 225087 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein StkA complement(224482..225087) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612030.1 CDS IA1_00990 NC_022525.1 225364 225744 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate decarboxylase complement(225364..225744) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612031.1 CDS panC NC_022525.1 225839 226693 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; pantoate--beta-alanine ligase complement(225839..226693) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612032.1 CDS panB NC_022525.1 226819 227610 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(226819..227610) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612033.1 CDS IA1_01005 NC_022525.1 227731 228210 R catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(227731..228210) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612034.1 CDS pcnB NC_022525.1 228207 229625 R Polymerase that creates the 3' poly(A) tail found in some mRNA's; Derived by automated computational analysis using gene prediction method: Protein Homology.; poly(A) polymerase I complement(228207..229625) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612035.1 CDS IA1_01015 NC_022525.1 229766 230707 R this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamyl-Q tRNA(Asp) ligase complement(229766..230707) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612036.1 CDS dksA NC_022525.1 230731 231186 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(230731..231186) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612037.1 CDS IA1_01025 NC_022525.1 231363 232067 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(231363..232067) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612038.1 CDS IA1_01030 NC_022525.1 232084 232614 R catalyzes the ligation and cleavage of of 2'-5' linkages in RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2'-5' RNA ligase complement(232084..232614) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612039.1 CDS IA1_01035 NC_022525.1 232642 235116 D similar in sequence to the ATP-dependent RNA helicase HrpA; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 232642..235116 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612040.1 CDS mrcB NC_022525.1 235257 237779 D penicillin-binding protein 1b; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; bifunctional glycosyl transferase/transpeptidase 235257..237779 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612041.1 CDS IA1_01045 NC_022525.1 238072 240261 D involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferrichrome outer membrane transporter 238072..240261 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612042.1 CDS IA1_01050 NC_022525.1 240310 241107 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; iron-hydroxamate transporter ATP-binding protein 240310..241107 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612043.1 CDS IA1_01055 NC_022525.1 241107 241997 D Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-hydroxamate transporter substrate-binding subunit 241107..241997 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612044.1 CDS IA1_01060 NC_022525.1 241994 244051 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-hydroxamate transporter permease subunit 241994..244051 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612045.1 CDS IA1_01065 NC_022525.1 244991 245551 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 244991..245551 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612046.1 CDS IA1_01070 NC_022525.1 245637 248294 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein SteB 245637..248294 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612047.1 CDS IA1_01075 NC_022525.1 248312 249064 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone protein StdC 248312..249064 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612048.1 CDS IA1_01080 NC_022525.1 249083 249595 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 249083..249595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612049.1 CDS IA1_01085 NC_022525.1 249592 250068 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein SteE 249592..250068 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612050.1 CDS IA1_01090 NC_022525.1 250068 250598 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 250068..250598 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612051.1 CDS IA1_01095 NC_022525.1 250667 251437 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 250667..251437 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612052.1 CDS IA1_01100 NC_022525.1 251545 252825 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate-1-semialdehyde aminotransferase complement(251545..252825) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612053.1 CDS IA1_01105 NC_022525.1 252995 254416 D Derived by automated computational analysis using gene prediction method: Protein Homology.; H(+)/Cl(-) exchange transporter ClcA 252995..254416 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612054.1 CDS IA1_01110 NC_022525.1 254498 254842 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster insertion protein ErpA 254498..254842 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612055.1 CDS IA1_01115 NC_022525.1 254943 255566 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(254943..255566) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612056.1 CDS IA1_01120 NC_022525.1 255603 256403 R solute binding component of the vitamin B12 transport system BtuCDF; Derived by automated computational analysis using gene prediction method: Protein Homology.; vitamin B12 transporter complement(255603..256403) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612057.1 CDS IA1_01125 NC_022525.1 256396 257094 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(256396..257094) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612058.1 CDS dgt NC_022525.1 257179 258696 D forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyguanosinetriphosphate triphosphohydrolase 257179..258696 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612059.1 CDS IA1_01135 NC_022525.1 258826 260253 D protease Do; required at high temperature; degrades damaged proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine endoprotease 258826..260253 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612060.1 CDS IA1_01140 NC_022525.1 260406 261563 D regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; CdaR family transcriptional regulator 260406..261563 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612061.1 CDS IA1_01145 NC_022525.1 261652 262038 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(261652..262038) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612062.1 CDS IA1_01150 NC_022525.1 262285 263586 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 262285..263586 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612063.1 CDS dapD NC_022525.1 263623 264447 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(263623..264447) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612064.1 CDS IA1_01160 NC_022525.1 264477 267149 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; PII uridylyl-transferase complement(264477..267149) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612065.1 CDS IA1_01165 NC_022525.1 267387 268181 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine aminopeptidase complement(267387..268181) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612066.1 CDS IA1_01170 NC_022525.1 268632 269357 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S2 268632..269357 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612067.1 CDS tsf NC_022525.1 269615 270466 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; Derived by automated computational analysis using gene prediction method: Protein Homology.; endo-1,4-D-glucanase 269615..270466 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612068.1 CDS IA1_01180 NC_022525.1 270611 271336 D Derived by automated computational analysis using gene prediction method: Protein Homology.; uridylate kinase 270611..271336 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612069.1 CDS frr NC_022525.1 271483 272040 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome recycling factor 271483..272040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612070.1 CDS IA1_01190 NC_022525.1 272181 273377 D catalyzes the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 272181..273377 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612071.1 CDS IA1_01195 NC_022525.1 273690 274448 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP pyrophosphate synthase 273690..274448 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612072.1 CDS cdsA NC_022525.1 274461 275318 D catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; Derived by automated computational analysis using gene prediction method: Protein Homology.; CDP-diglyceride synthase 274461..275318 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612073.1 CDS IA1_01205 NC_022525.1 275330 276682 D catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc metallopeptidase RseP 275330..276682 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612074.1 CDS IA1_01210 NC_022525.1 276714 279128 D part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein assembly factor YaeT 276714..279128 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612075.1 CDS IA1_01215 NC_022525.1 279251 279736 D Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone 279251..279736 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612076.1 CDS lpxD NC_022525.1 279740 280765 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 279740..280765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612077.1 CDS IA1_01225 NC_022525.1 280871 281326 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxymyristoyl-ACP dehydratase 280871..281326 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612078.1 CDS IA1_01230 NC_022525.1 281330 282118 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylglucosamine acyltransferase 281330..282118 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612079.1 CDS lpxB NC_022525.1 282118 283266 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid-A-disaccharide synthase 282118..283266 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612080.1 CDS rnhB NC_022525.1 283263 283859 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease HII 283263..283859 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612081.1 CDS dnaE NC_022525.1 283883 287365 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit alpha 283883..287365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612082.1 CDS IA1_01250 NC_022525.1 287378 288337 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase subunit alpha 287378..288337 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612083.1 CDS IA1_01255 NC_022525.1 288518 290281 D Derived by automated computational analysis using gene prediction method: Protein Homology.; chitinase 288518..290281 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612084.1 CDS IA1_01260 NC_022525.1 290357 292498 D constitutive; catalyzes the formation of cadaverine from lysine; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine decarboxylase CadA 290357..292498 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612085.1 CDS IA1_01265 NC_022525.1 292554 292943 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lyase 292554..292943 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612086.1 CDS tilS NC_022525.1 293006 294298 D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA(Ile)-lysidine ligase 293006..294298 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612087.1 CDS IA1_01275 NC_022525.1 294382 294642 R Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Rho-binding antiterminator complement(294382..294642) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612088.1 CDS IA1_01280 NC_022525.1 294629 294829 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(294629..294829) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612089.1 CDS IA1_01285 NC_022525.1 295027 295572 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 295027..295572 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612090.1 CDS IA1_01290 NC_022525.1 295569 295991 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 295569..295991 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612091.1 CDS IA1_01295 NC_022525.1 296143 296724 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lipoprotein involved with copper homeostasis and adhesion 296143..296724 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612092.1 CDS IA1_01300 NC_022525.1 296803 298521 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); Derived by automated computational analysis using gene prediction method: Protein Homology.; prolyl-tRNA synthetase complement(296803..298521) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612093.1 CDS IA1_01305 NC_022525.1 298632 299339 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(298632..299339) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612094.1 CDS rcsF NC_022525.1 299336 299740 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; outer membrane lipoprotein complement(299336..299740) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612095.1 CDS metQ NC_022525.1 299859 300674 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter substrate-binding protein complement(299859..300674) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612096.1 CDS IA1_01320 NC_022525.1 300713 301366 R part of the MetNIQ methionine uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter permease complement(300713..301366) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612097.1 CDS metN NC_022525.1 301359 302390 R part of the metNIQ transport system for methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter ATP-binding protein complement(301359..302390) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612098.1 CDS IA1_01330 NC_022525.1 302580 303146 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; D,D-heptose 1,7-bisphosphate phosphatase 302580..303146 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612099.1 CDS dkgB NC_022525.1 309154 309957 D catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,5-diketo-D-gluconic acid reductase 309154..309957 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612100.1 CDS IA1_01370 NC_022525.1 309978 310892 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(309978..310892) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612101.1 CDS IA1_01375 NC_022525.1 310997 312172 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar MFS transporter 310997..312172 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612102.1 CDS IA1_01380 NC_022525.1 312304 313104 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 312304..313104 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612103.1 CDS IA1_01385 NC_022525.1 313182 313952 D Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB 313182..313952 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612104.1 CDS mltD NC_022525.1 314008 315375 R catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(314008..315375) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612105.1 CDS IA1_01395 NC_022525.1 315447 316202 R catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyacylglutathione hydrolase complement(315447..316202) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612106.1 CDS IA1_01400 NC_022525.1 316237 316959 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 316237..316959 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612107.1 CDS IA1_01405 NC_022525.1 316956 317423 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease H complement(316956..317423) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612108.1 CDS IA1_01410 NC_022525.1 317478 318218 D 3'-5' exonuclease of DNA polymerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit epsilon 317478..318218 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612109.1 CDS IA1_01420 NC_022525.1 318749 319804 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(318749..319804) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612110.1 CDS IA1_01425 NC_022525.1 319815 320810 R Derived by automated computational analysis using gene prediction method: Protein Homology.; SPI-6 associated protein complement(319815..320810) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612111.1 CDS IA1_01430 NC_022525.1 320807 322690 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type VI secretion protein complement(320807..322690) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612112.1 CDS IA1_01435 NC_022525.1 322706 323200 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoplasmic protein complement(322706..323200) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612113.1 CDS IA1_01440 NC_022525.1 323197 324021 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(323197..324021) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612114.1 CDS IA1_01445 NC_022525.1 324008 324910 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(324008..324910) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612115.1 CDS IA1_01450 NC_022525.1 325278 327917 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protein disaggregation chaperone 325278..327917 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612116.1 CDS IA1_01455 NC_022525.1 328017 328559 D Derived by automated computational analysis using gene prediction method: Protein Homology.; type VI secretion protein 328017..328559 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612117.1 CDS IA1_01460 NC_022525.1 328583 330091 D Derived by automated computational analysis using gene prediction method: Protein Homology.; EvpB family type VI secretion protein 328583..330091 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612118.1 CDS IA1_01465 NC_022525.1 330977 331462 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Hcp1 family type VI secretion system effector 330977..331462 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612119.1 CDS IA1_01470 NC_022525.1 331765 332250 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 331765..332250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612120.1 CDS IA1_01475 NC_022525.1 332235 332618 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 332235..332618 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612121.1 CDS IA1_01480 NC_022525.1 332761 333246 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Hcp1 family type VI secretion system effector 332761..333246 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612122.1 CDS IA1_01485 NC_022525.1 333313 333849 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein 333313..333849 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612123.1 CDS IA1_01490 NC_022525.1 333853 335196 D Derived by automated computational analysis using gene prediction method: Protein Homology.; type VI secretion protein 333853..335196 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612124.1 CDS IA1_01495 NC_022525.1 335193 336497 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 335193..336497 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612125.1 CDS IA1_01500 NC_022525.1 336502 337275 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 336502..337275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612126.1 CDS IA1_01505 NC_022525.1 337466 337909 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Shiga toxin A subunit 337466..337909 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612127.1 CDS IA1_01510 NC_022525.1 337943 341812 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 337943..341812 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612128.1 CDS IA1_01515 NC_022525.1 341812 342579 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 341812..342579 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612129.1 CDS IA1_01520 NC_022525.1 342622 343092 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 342622..343092 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612130.1 CDS IA1_01525 NC_022525.1 343695 344081 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 343695..344081 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612131.1 CDS IA1_01530 NC_022525.1 344108 344626 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; SPI-6 associated protein 344108..344626 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612132.1 CDS IA1_01535 NC_022525.1 345023 347212 D Derived by automated computational analysis using gene prediction method: Protein Homology.; type VI secretion protein Vgr 345023..347212 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612133.1 CDS IA1_01540 NC_022525.1 347236 347682 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 347236..347682 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612134.1 CDS IA1_01545 NC_022525.1 347701 351789 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs 347701..351789 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612135.1 CDS IA1_01550 NC_022525.1 351799 352644 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; toxin 351799..352644 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612136.1 CDS IA1_01555 NC_022525.1 352759 353940 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 352759..353940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612137.1 CDS IA1_01560 NC_022525.1 353934 354197 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 353934..354197 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612138.1 CDS IA1_01565 NC_022525.1 354297 355154 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 354297..355154 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612139.1 CDS IA1_01570 NC_022525.1 355945 356145 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(355945..356145) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612140.1 CDS IA1_01575 NC_022525.1 356256 359087 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs 356256..359087 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612141.1 CDS IA1_01580 NC_022525.1 359104 359529 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 359104..359529 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612142.1 CDS IA1_01585 NC_022525.1 359672 360970 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs 359672..360970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612143.1 CDS IA1_01590 NC_022525.1 360967 361401 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 360967..361401 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612144.1 CDS IA1_01595 NC_022525.1 361448 361711 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(361448..361711) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612145.1 CDS IA1_01600 NC_022525.1 362103 362312 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 362103..362312 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612146.1 CDS IA1_01605 NC_022525.1 362382 362849 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 362382..362849 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612147.1 CDS IA1_01615 NC_022525.1 363140 363337 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase 363140..363337 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612148.1 CDS IA1_01620 NC_022525.1 363563 363841 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 363563..363841 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612149.1 CDS IA1_01625 NC_022525.1 364636 365130 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 364636..365130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612150.1 CDS IA1_01630 NC_022525.1 365263 365760 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 365263..365760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612151.1 CDS IA1_01635 NC_022525.1 365835 366575 D Derived by automated computational analysis using gene prediction method: Protein Homology.; pili assembly chaperone protein SafB 365835..366575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612152.1 CDS IA1_01640 NC_022525.1 366599 369109 D Derived by automated computational analysis using gene prediction method: Protein Homology.; pilin outer membrane usher protein SafC 366599..369109 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612153.1 CDS IA1_01645 NC_022525.1 369131 369601 D Derived by automated computational analysis using gene prediction method: Protein Homology.; pilin structural protein SafD 369131..369601 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612154.1 CDS IA1_01650 NC_022525.1 370007 370828 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbohydrate transporter 370007..370828 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612155.1 CDS IA1_01655 NC_022525.1 370908 371168 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PerC transcriptional activator 370908..371168 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612156.1 CDS IA1_01660 NC_022525.1 371359 371442 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase TnpA 371359..371442 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612157.1 CDS IA1_01665 NC_022525.1 371645 372592 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 371645..372592 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612158.1 CDS IA1_01670 NC_022525.1 372931 373650 R mediates invasion via interaction with proteoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; adhesin complement(372931..373650) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612159.1 CDS IA1_01675 NC_022525.1 373981 374388 R Derived by automated computational analysis using gene prediction method: Protein Homology.; VirG complement(373981..374388) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612160.1 CDS IA1_01680 NC_022525.1 374698 375465 R NAD(P)-binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; C-N hydrolase family amidase complement(374698..375465) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612161.1 CDS fadE NC_022525.1 375574 378018 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase complement(375574..378018) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612162.1 CDS gmhA NC_022525.1 378258 378836 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoheptose isomerase 378258..378836 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612163.1 CDS IA1_01695 NC_022525.1 379049 379816 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine amidotransferase 379049..379816 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612164.1 CDS IA1_01700 NC_022525.1 379787 380527 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transpeptidase complement(379787..380527) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612165.1 CDS IA1_01705 NC_022525.1 380777 381832 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase IV 380777..381832 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612166.1 CDS IA1_01710 NC_022525.1 382051 383190 D mutations in this gene result in a compromised ability for drug-inducible mexXY expression; expression is inducible by the same ribosome-targeting agents that induce mexXY; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 382051..383190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612167.1 CDS prfH NC_022525.1 383187 383801 D similar to release factor 1 and 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 383187..383801 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612168.1 CDS IA1_01720 NC_022525.1 383957 385414 R catalyzes the hydrolysis of Xaa-His dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoacyl-histidine dipeptidase complement(383957..385414) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612169.1 CDS IA1_01725 NC_022525.1 385663 386121 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine phosphoribosyltransferase 385663..386121 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612170.1 CDS frsA NC_022525.1 386210 387454 D forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; Derived by automated computational analysis using gene prediction method: Protein Homology.; fermentation/respiration switch protein 386210..387454 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612171.1 CDS IA1_01735 NC_022525.1 387512 387913 D involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 387512..387913 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612172.1 CDS IA1_01740 NC_022525.1 387964 389016 R Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane phosphoporin protein E complement(387964..389016) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612173.1 CDS IA1_01745 NC_022525.1 389299 390402 D Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyl kinase 389299..390402 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612174.1 CDS IA1_01750 NC_022525.1 390414 391664 D Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyl phosphate reductase 390414..391664 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612175.1 CDS IA1_01760 NC_022525.1 392291 393157 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS3 complement(392291..393157) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612176.1 CDS IA1_01765 NC_022525.1 393154 393462 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS3 complement(393154..393462) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612177.1 CDS IA1_01770 NC_022525.1 393520 393888 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycerol dehydratase 393520..393888 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612178.1 CDS IA1_01775 NC_022525.1 393854 393961 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 393854..393961 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612179.1 CDS IA1_01780 NC_022525.1 394095 394394 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 394095..394394 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612180.1 CDS IA1_01785 NC_022525.1 394637 395974 D Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 394637..395974 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612181.1 CDS IA1_01790 NC_022525.1 396106 397527 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydratase large subunit 396106..397527 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612182.1 CDS leuD NC_022525.1 397529 398155 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; Derived by automated computational analysis using gene prediction method: Protein Homology.; isopropylmalate isomerase 397529..398155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612183.1 CDS IA1_01800 NC_022525.1 398170 399048 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 398170..399048 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612184.1 CDS IA1_01805 NC_022525.1 399048 399962 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 399048..399962 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612185.1 CDS IA1_01810 NC_022525.1 399996 400961 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 399996..400961 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612186.1 CDS IA1_01820 NC_022525.1 401869 402267 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 401869..402267 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612187.1 CDS IA1_01825 NC_022525.1 402314 403072 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial assembly chaperone StbE complement(402314..403072) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612188.1 CDS IA1_01830 NC_022525.1 403038 404363 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial usher protein StbD complement(403038..404363) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612189.1 CDS IA1_01835 NC_022525.1 404368 406941 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial outer membrane usher protein StbC complement(404368..406941) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612190.1 CDS IA1_01840 NC_022525.1 406925 407545 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial chaperone protein StbB complement(406925..407545) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612191.1 CDS IA1_01845 NC_022525.1 407748 408284 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein complement(407748..408284) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612192.1 CDS IA1_01850 NC_022525.1 408948 409682 D Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator 408948..409682 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612193.1 CDS IA1_01855 NC_022525.1 409655 410155 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 409655..410155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612194.1 CDS IA1_01860 NC_022525.1 410479 412029 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; rtn protein 410479..412029 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612195.1 CDS IA1_01865 NC_022525.1 412129 412872 D Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator 412129..412872 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612196.1 CDS IA1_01870 NC_022525.1 412845 413333 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 412845..413333 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612197.1 CDS IA1_01875 NC_022525.1 413735 414259 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 413735..414259 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612198.1 CDS IA1_01880 NC_022525.1 414403 415044 D Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator 414403..415044 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612199.1 CDS IA1_01885 NC_022525.1 415055 415279 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 415055..415279 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612200.1 CDS IA1_01890 NC_022525.1 415337 415696 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 415337..415696 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612201.1 CDS IA1_01895 NC_022525.1 415766 417256 R Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(415766..417256) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612202.1 CDS IA1_01900 NC_022525.1 417240 420407 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(417240..420407) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612203.1 CDS IA1_01905 NC_022525.1 420404 421630 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transporter complement(420404..421630) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612204.1 CDS IA1_01910 NC_022525.1 421907 424210 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ATPase 421907..424210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612205.1 CDS IA1_01915 NC_022525.1 424207 424671 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 424207..424671 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612206.1 CDS IA1_01920 NC_022525.1 424749 424943 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Heavy-metal-associated domain-containing protein 424749..424943 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612207.1 CDS IA1_01925 NC_022525.1 425235 426488 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar transporter 425235..426488 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612208.1 CDS IA1_01930 NC_022525.1 426677 428635 D Derived by automated computational analysis using gene prediction method: Protein Homology.; type III restriction endonuclease StyLTI 426677..428635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612209.1 CDS IA1_01935 NC_022525.1 428648 431617 D cleaves DNA 25 basepairs downstream from the recognition site; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III restriction endonuclease StyLTI 428648..431617 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612210.1 CDS IA1_01940 NC_022525.1 432112 433515 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome D ubiquinol oxidase subunit I 432112..433515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612211.1 CDS IA1_01945 NC_022525.1 433512 434522 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ubiquinol oxidase subunit II, cyanide insensitive 433512..434522 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612212.1 CDS IA1_01950 NC_022525.1 434860 435864 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; AraC family transcriptional regulator 434860..435864 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612213.1 CDS IA1_01955 NC_022525.1 436022 438118 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ferrioxamine B receptor 436022..438118 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612214.1 CDS IA1_01960 NC_022525.1 438159 438791 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(438159..438791) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612215.1 CDS IA1_01965 NC_022525.1 439023 439298 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 439023..439298 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612216.1 CDS IA1_01970 NC_022525.1 439434 441059 R sigma-54 dependent activator family protein; activates the prpBCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; propionate catabolism operon regulatory protein PrpR complement(439434..441059) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612217.1 CDS prpB NC_022525.1 441325 442212 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-methylisocitrate lyase 441325..442212 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612218.1 CDS IA1_01980 NC_022525.1 442335 443504 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; Derived by automated computational analysis using gene prediction method: Protein Homology.; methylcitrate synthase 442335..443504 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612219.1 CDS prpD NC_022525.1 443544 444995 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-methylcitrate dehydratase 443544..444995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612220.1 CDS prpE NC_022525.1 445036 446922 D catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA synthetase 445036..446922 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612221.1 CDS IA1_01995 NC_022525.1 447029 448003 R Derived by automated computational analysis using gene prediction method: Protein Homology.; delta-aminolevulinic acid dehydratase complement(447029..448003) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612222.1 CDS IA1_02000 NC_022525.1 448516 451488 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 448516..451488 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612223.1 CDS IA1_02005 NC_022525.1 451574 452197 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 451574..452197 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612224.1 CDS IA1_02010 NC_022525.1 452242 453399 R this protein has no known enzymatic function; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-lactam binding protein AmpH complement(452242..453399) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612225.1 CDS IA1_02015 NC_022525.1 453746 454966 D in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; Derived by automated computational analysis using gene prediction method: Protein Homology.; microcin B17 transporter 453746..454966 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612226.1 CDS IA1_02020 NC_022525.1 454981 456075 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 454981..456075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612227.1 CDS IA1_02025 NC_022525.1 456113 456421 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(456113..456421) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612228.1 CDS IA1_02030 NC_022525.1 456513 456602 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(456513..456602) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612229.1 CDS IA1_02035 NC_022525.1 456689 456904 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 456689..456904 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612230.1 CDS IA1_02040 NC_022525.1 456930 458024 R Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanine--D-alanine ligase complement(456930..458024) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612231.1 CDS IA1_02045 NC_022525.1 458102 458815 D Derived by automated computational analysis using gene prediction method: Protein Homology.; extensin 458102..458815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612232.1 CDS IA1_02050 NC_022525.1 458984 460195 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 458984..460195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612233.1 CDS IA1_02055 NC_022525.1 460492 460752 D RpoS stabilzer during Pi starvation; anti-adapter protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-RssB factor 460492..460752 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612234.1 CDS IA1_02060 NC_022525.1 461104 461424 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 461104..461424 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612235.1 CDS IA1_02065 NC_022525.1 461516 462628 D Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase 461516..462628 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612236.1 CDS IA1_02070 NC_022525.1 462643 463452 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyrroline-5-carboxylate reductase complement(462643..463452) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612237.1 CDS IA1_02075 NC_022525.1 463592 464047 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 463592..464047 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612238.1 CDS aroL NC_022525.1 464232 464777 D type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate kinase 464232..464777 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612239.1 CDS IA1_02085 NC_022525.1 464804 464995 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 464804..464995 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612240.1 CDS IA1_02090 NC_022525.1 465246 465923 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 465246..465923 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612241.1 CDS IA1_02095 NC_022525.1 465994 466278 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 465994..466278 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612242.1 CDS rdgC NC_022525.1 466316 467227 R Required for efficient pilin antigenic variation; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase complement(466316..467227) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612243.1 CDS IA1_02105 NC_022525.1 467353 468261 D catalyzes phosphorylation of fructose; cytosolic enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructokinase 467353..468261 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612244.1 CDS IA1_02110 NC_022525.1 468281 469453 R member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter complement(468281..469453) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612245.1 CDS IA1_02115 NC_022525.1 469626 472766 R with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; exonuclease subunit SbcC complement(469626..472766) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612246.1 CDS IA1_02120 NC_022525.1 472763 473965 R with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease subunit SbcD complement(472763..473965) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612247.1 CDS IA1_02125 NC_022525.1 473998 474138 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(473998..474138) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612248.1 CDS IA1_02130 NC_022525.1 474180 474869 D two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; Derived by automated computational analysis using gene prediction method: Protein Homology.; PhoB family transcriptional regulator 474180..474869 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612249.1 CDS phoR NC_022525.1 474939 476234 D membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate regulon sensor protein 474939..476234 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612250.1 CDS IA1_02140 NC_022525.1 476643 477962 D sodium:branched-chain amino acid symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid transporter 2 carrier protein BrnQ 476643..477962 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612251.1 CDS proY NC_022525.1 477977 479407 D cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 477977..479407 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612252.1 CDS IA1_02150 NC_022525.1 479569 481386 D Derived by automated computational analysis using gene prediction method: Protein Homology.; maltodextrin glucosidase 479569..481386 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612253.1 CDS IA1_02155 NC_022525.1 481458 482060 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peroxiredoxin complement(481458..482060) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612254.1 CDS IA1_02160 NC_022525.1 482270 482851 R Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; ACP phosphodiesterase complement(482270..482851) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612255.1 CDS queA NC_022525.1 482945 484009 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine tRNA ribosyltransferase 482945..484009 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612256.1 CDS tgt NC_022525.1 484206 485333 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); Derived by automated computational analysis using gene prediction method: Protein Homology.; queuine tRNA-ribosyltransferase 484206..485333 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612257.1 CDS yajC NC_022525.1 485356 485688 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit YajC 485356..485688 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612258.1 CDS secD NC_022525.1 485716 487563 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecD 485716..487563 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612259.1 CDS IA1_02185 NC_022525.1 487574 488545 D Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecF 487574..488545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612260.1 CDS IA1_02190 NC_022525.1 488693 489058 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glyoxalase 488693..489058 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612261.1 CDS IA1_02195 NC_022525.1 489084 489776 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR faimly transcriptional regulator 489084..489776 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612262.1 CDS IA1_02200 NC_022525.1 489946 490293 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 489946..490293 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612263.1 CDS IA1_02205 NC_022525.1 490731 490838 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Toxic polypeptide, small 490731..490838 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612264.1 CDS IA1_02210 NC_022525.1 490922 491785 R receptor of phage T6 and colicin K; involved in the transfer of deoxyribo- and ribo-nucleotides across the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; ion channel protein Tsx complement(490922..491785) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612265.1 CDS IA1_02215 NC_022525.1 492085 492624 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(492085..492624) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612266.1 CDS IA1_02220 NC_022525.1 492776 493225 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; NrdR family transcriptional regulator 492776..493225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612267.1 CDS ribD NC_022525.1 493229 494332 D riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminohydroxyphosphoribosylaminopyrimidine deaminase 493229..494332 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612268.1 CDS ribH NC_022525.1 494421 494891 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6,7-dimethyl-8-ribityllumazine synthase 494421..494891 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612269.1 CDS nusB NC_022525.1 494912 495331 D Regulates rRNA biosynthesis by transcriptional antitermination; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription antitermination protein NusB 494912..495331 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612270.1 CDS IA1_02240 NC_022525.1 495413 496393 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine monophosphate kinase 495413..496393 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612271.1 CDS IA1_02245 NC_022525.1 496371 496886 D hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylglycerophosphatase A 496371..496886 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612272.1 CDS IA1_02250 NC_022525.1 496990 497964 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(496990..497964) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612273.1 CDS IA1_02255 NC_022525.1 498021 499883 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 1-deoxy-D-xylulose-5-phosphate synthase complement(498021..499883) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612274.1 CDS IA1_02260 NC_022525.1 499907 500806 R Derived by automated computational analysis using gene prediction method: Protein Homology.; geranyltranstransferase complement(499907..500806) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612275.1 CDS IA1_02265 NC_022525.1 500807 501049 R catalyzes the bidirectional exonucleolytic cleavage of DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VII small subunit complement(500807..501049) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612276.1 CDS IA1_02270 NC_022525.1 501259 502707 D catalyzes the conversion of uridine to 4-thiouridinine tRNA; also required for the synthesis of the thiazole moiety; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA s(4)U8 sulfurtransferase 501259..502707 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612277.1 CDS IA1_02275 NC_022525.1 502751 503548 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate ABC transporter permease complement(502751..503548) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612278.1 CDS IA1_02280 NC_022525.1 503551 504411 R involved in the transport of 2-aminoethylphosphonate into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate ABC transporter permease complement(503551..504411) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612279.1 CDS IA1_02285 NC_022525.1 504414 505523 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate ABC transporter ATP-binding protein complement(504414..505523) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612280.1 CDS IA1_02290 NC_022525.1 505529 506542 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate ABC transporter substrate-binding protein complement(505529..506542) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612281.1 CDS IA1_02295 NC_022525.1 506740 507459 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(506740..507459) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612282.1 CDS IA1_02300 NC_022525.1 507490 507600 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(507490..507600) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612283.1 CDS IA1_02305 NC_022525.1 507599 508702 D catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-aminoethylphosphonate:pyruvate aminotransferase 507599..508702 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612284.1 CDS IA1_02310 NC_022525.1 508712 509521 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphonoacetaldehyde hydrolase 508712..509521 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612285.1 CDS IA1_02315 NC_022525.1 509618 510208 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidative-stress-resistance chaperone complement(509618..510208) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612286.1 CDS IA1_02320 NC_022525.1 510171 511082 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-dehydropantoate 2-reductase complement(510171..511082) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612287.1 CDS IA1_02325 NC_022525.1 511208 511699 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotide-binding protein 511208..511699 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612288.1 CDS IA1_02330 NC_022525.1 511746 513110 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(511746..513110) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612289.1 CDS IA1_02335 NC_022525.1 513647 515158 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 513647..515158 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612290.1 CDS IA1_02340 NC_022525.1 515170 516639 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 515170..516639 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612291.1 CDS IA1_02345 NC_022525.1 516687 517577 R converts protoheme IX and farnesyl diphosphate to heme O; Derived by automated computational analysis using gene prediction method: Protein Homology.; protoheme IX farnesyltransferase complement(516687..517577) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612292.1 CDS IA1_02350 NC_022525.1 517589 517918 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase complement(517589..517918) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612293.1 CDS IA1_02355 NC_022525.1 517918 518532 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase complement(517918..518532) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612294.1 CDS IA1_02360 NC_022525.1 518522 520513 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase complement(518522..520513) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612295.1 CDS IA1_02365 NC_022525.1 520524 521480 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase complement(520524..521480) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612296.1 CDS ampG NC_022525.1 521933 523408 R in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; muropeptide transporter complement(521933..523408) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612297.1 CDS IA1_02375 NC_022525.1 523452 524081 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(523452..524081) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612298.1 CDS IA1_02380 NC_022525.1 524334 524651 D positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; BolA family transcriptional regulator 524334..524651 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612299.1 CDS IA1_02385 NC_022525.1 524998 526296 D Derived by automated computational analysis using gene prediction method: Protein Homology.; trigger factor 524998..526296 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612300.1 CDS IA1_02390 NC_022525.1 526544 527167 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Clp protease proteolytic subunit ClpP 526544..527167 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612301.1 CDS clpX NC_022525.1 527419 528690 D binds and unfolds substrates as part of the ClpXP protease; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease 527419..528690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612302.1 CDS IA1_02400 NC_022525.1 528876 531230 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase 528876..531230 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612303.1 CDS IA1_02405 NC_022525.1 531439 531711 D histone-like DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 531439..531711 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612304.1 CDS IA1_02410 NC_022525.1 532002 533873 D Derived by automated computational analysis using gene prediction method: Protein Homology.; folding chaperone 532002..533873 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612305.1 CDS IA1_02415 NC_022525.1 534023 534397 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 534023..534397 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612306.1 CDS IA1_02420 NC_022525.1 534501 534899 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thioesterase 534501..534899 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612307.1 CDS IA1_02425 NC_022525.1 535005 535700 R YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; Derived by automated computational analysis using gene prediction method: Protein Homology.; queuosine biosynthesis protein QueC complement(535005..535700) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612308.1 CDS IA1_02430 NC_022525.1 535765 537465 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(535765..537465) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612309.1 CDS IA1_02435 NC_022525.1 537566 538384 D HMP-PP phosphatase; catalyzes the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate (HMP-PP) to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate (HMP-P); Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamin pyrimidine pyrophosphate hydrolase 537566..538384 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612310.1 CDS IA1_02440 NC_022525.1 538434 539489 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine synthase complement(538434..539489) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612311.1 CDS IA1_02445 NC_022525.1 539602 540060 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 539602..540060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612312.1 CDS IA1_02450 NC_022525.1 540101 541873 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein 540101..541873 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612313.1 CDS IA1_02455 NC_022525.1 541866 543647 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein 541866..543647 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612314.1 CDS IA1_02460 NC_022525.1 543860 544198 D indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulatory protein P-II 2 543860..544198 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612315.1 CDS IA1_02465 NC_022525.1 544230 545516 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ammonium transporter 544230..545516 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612316.1 CDS IA1_02470 NC_022525.1 545616 546476 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA thioesterase complement(545616..546476) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612317.1 CDS IA1_02475 NC_022525.1 546691 547260 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 546691..547260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612318.1 CDS IA1_02480 NC_022525.1 547293 547604 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(547293..547604) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612319.1 CDS IA1_02485 NC_022525.1 547913 549463 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic diguanylate phosphodiesterase complement(547913..549463) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612320.1 CDS IA1_02490 NC_022525.1 549688 549948 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L31 549688..549948 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612321.1 CDS rpmJ NC_022525.1 549954 550094 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L36 549954..550094 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612322.1 CDS IA1_02500 NC_022525.1 550150 550620 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(550150..550620) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612323.1 CDS IA1_02505 NC_022525.1 550738 551289 R Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose O-acetyltransferase complement(550738..551289) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612324.1 CDS IA1_02510 NC_022525.1 551468 551686 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; gene expression modulator complement(551468..551686) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612325.1 CDS IA1_02515 NC_022525.1 551714 552088 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Hha toxicity attenuator complement(551714..552088) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612326.1 CDS IA1_02520 NC_022525.1 552584 555733 R Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(552584..555733) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612327.1 CDS IA1_02525 NC_022525.1 555756 556949 R with AcrD and TolC forms a transport system involved in resistance to a number of compounds including lipophilic antibiotics; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(555756..556949) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612328.1 CDS IA1_02530 NC_022525.1 557091 557744 D regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 557091..557744 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612329.1 CDS IA1_02535 NC_022525.1 557863 561225 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 557863..561225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612330.1 CDS IA1_02545 NC_022525.1 562396 562563 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(562396..562563) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612331.1 CDS IA1_02550 NC_022525.1 562577 563092 R PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks; Derived by automated computational analysis using gene prediction method: Protein Homology.; primosomal replication protein N'' complement(562577..563092) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612332.1 CDS IA1_02555 NC_022525.1 563173 563550 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 563173..563550 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612333.1 CDS IA1_02560 NC_022525.1 563703 564254 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine phosphoribosyltransferase 563703..564254 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612334.1 CDS IA1_02565 NC_022525.1 564368 566296 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunits gamma and tau 564368..566296 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612335.1 CDS IA1_02570 NC_022525.1 566342 566671 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 566342..566671 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612336.1 CDS recR NC_022525.1 566671 567276 D involved in a recombinational process of DNA repair, independent of the recBC complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase RecR 566671..567276 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612337.1 CDS IA1_02580 NC_022525.1 567387 569261 D molecular chaperone; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; heat shock protein 90 567387..569261 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612338.1 CDS adk NC_022525.1 569677 570321 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylate kinase 569677..570321 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612339.1 CDS IA1_02590 NC_022525.1 570550 571512 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ferrochelatase 570550..571512 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612340.1 CDS IA1_02595 NC_022525.1 571509 572480 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl esterase complement(571509..572480) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612341.1 CDS IA1_02600 NC_022525.1 572588 573937 D catalyzes the formation of inosine/guanosine monophosphate from inosine or guanosine and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; inosine/guanosine kinase 572588..573937 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612342.1 CDS IA1_02605 NC_022525.1 573986 575662 R YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; cation:proton antiport protein complement(573986..575662) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612343.1 CDS IA1_02610 NC_022525.1 575740 575865 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 575740..575865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612344.1 CDS IA1_02615 NC_022525.1 575877 577097 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Fosmidomycin resistance protein complement(575877..577097) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612345.1 CDS ushA NC_022525.1 577270 578922 D catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-nucleotidase 577270..578922 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612346.1 CDS IA1_02625 NC_022525.1 579038 579517 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(579038..579517) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612347.1 CDS IA1_02630 NC_022525.1 579719 580513 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(579719..580513) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612348.1 CDS IA1_02635 NC_022525.1 580599 581426 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(580599..581426) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612349.1 CDS copA NC_022525.1 581580 584081 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; copper exporting ATPase complement(581580..584081) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612350.1 CDS IA1_02645 NC_022525.1 584191 584607 D activator of copper-responsive regulon genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 584191..584607 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612351.1 CDS IA1_02650 NC_022525.1 584608 585060 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(584608..585060) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612352.1 CDS IA1_02655 NC_022525.1 585057 585974 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protease complement(585057..585974) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612353.1 CDS IA1_02660 NC_022525.1 586121 586798 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; putrescine/spermidine ABC transporter ATP-binding protein 586121..586798 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612354.1 CDS IA1_02665 NC_022525.1 586785 587564 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 586785..587564 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612355.1 CDS IA1_02670 NC_022525.1 587650 588504 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(587650..588504) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612356.1 CDS IA1_02675 NC_022525.1 588564 589334 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(588564..589334) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612357.1 CDS IA1_02680 NC_022525.1 589489 590103 R Derived by automated computational analysis using gene prediction method: Protein Homology.; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 complement(589489..590103) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612358.1 CDS IA1_02685 NC_022525.1 590074 590760 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter ATP-binding protein 590074..590760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612359.1 CDS IA1_02690 NC_022525.1 590757 593171 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter permease 590757..593171 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612360.1 CDS IA1_02695 NC_022525.1 593358 594491 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 593358..594491 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612361.1 CDS IA1_02700 NC_022525.1 594748 595578 D Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter ATPase 594748..595578 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612362.1 CDS metN NC_022525.1 595615 596631 D part of the metNIQ transport system for methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter ATP-binding protein 595615..596631 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612363.1 CDS IA1_02710 NC_022525.1 596624 597283 D part of the MetNIQ methionine uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter permease 596624..597283 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612364.1 CDS IA1_02715 NC_022525.1 597312 598406 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA 2-selenouridine synthase complement(597312..598406) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612365.1 CDS IA1_02720 NC_022525.1 598476 599402 R activator of the allDC-ylbA operon involved in allantoin utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(598476..599402) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612366.1 CDS IA1_02725 NC_022525.1 599629 600111 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ureidoglycolate hydrolase 599629..600111 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612367.1 CDS IA1_02730 NC_022525.1 600190 601008 D regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator 600190..601008 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612368.1 CDS IA1_02735 NC_022525.1 601123 602874 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 601123..602874 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612369.1 CDS IA1_02740 NC_022525.1 602887 603663 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxypyruvate isomerase 602887..603663 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612370.1 CDS IA1_02745 NC_022525.1 603764 604642 D NADH-dependent; catalyzed the reversible formation of glycerate from tartronate semialdehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; tartronate semialdehyde reductase 603764..604642 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612371.1 CDS IA1_02750 NC_022525.1 604708 605955 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; MFS transporter 604708..605955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612372.1 CDS IA1_02755 NC_022525.1 606051 607505 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; allantoin permease 606051..607505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612373.1 CDS IA1_02760 NC_022525.1 607584 608945 D Plays a crucial role on both purine and pyrimidine metabolism; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; allantoinase 607584..608945 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612374.1 CDS IA1_02765 NC_022525.1 609004 610302 D Derived by automated computational analysis using gene prediction method: Protein Homology.; purine permease 609004..610302 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612375.1 CDS IA1_02770 NC_022525.1 610325 611473 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerate kinase 610325..611473 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612376.1 CDS IA1_02775 NC_022525.1 611553 612338 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(611553..612338) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612377.1 CDS IA1_02780 NC_022525.1 612349 613584 R Derived by automated computational analysis using gene prediction method: Protein Homology.; allantoate amidohydrolase complement(612349..613584) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612378.1 CDS IA1_02785 NC_022525.1 613606 614655 R catalyzes the formation of oxalurate from ureidoglycolate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ureidoglycolate dehydrogenase complement(613606..614655) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612379.1 CDS IA1_02790 NC_022525.1 614971 616635 D multicopy suppressor of dominant negative ftsH mutations; putative acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 614971..616635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612380.1 CDS IA1_02795 NC_022525.1 616645 617904 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 616645..617904 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612381.1 CDS IA1_02800 NC_022525.1 617916 618725 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 617916..618725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612382.1 CDS IA1_02805 NC_022525.1 618729 619622 D reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamate kinase 618729..619622 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612383.1 CDS IA1_02810 NC_022525.1 619663 620730 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylaminoimidazole carboxylase complement(619663..620730) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612384.1 CDS purE NC_022525.1 620727 621236 R catalyzes the formation of 4-carboxy-5-aminoimidazole ribonucleotide from N5-carboxyaminoimidazole ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; N5-carboxyaminoimidazole ribonucleotide mutase complement(620727..621236) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612385.1 CDS IA1_02820 NC_022525.1 621354 622076 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-2,3-diacylglucosamine hydrolase complement(621354..622076) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612386.1 CDS IA1_02825 NC_022525.1 622079 622573 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(622079..622573) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612387.1 CDS cysS NC_022525.1 622746 624131 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteinyl-tRNA synthetase 622746..624131 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612388.1 CDS IA1_02835 NC_022525.1 624175 624999 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(624175..624999) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612389.1 CDS IA1_02840 NC_022525.1 624996 625433 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(624996..625433) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612390.1 CDS IA1_02845 NC_022525.1 625426 625971 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(625426..625971) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612391.1 CDS IA1_02850 NC_022525.1 626099 626311 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-associated protein complement(626099..626311) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612392.1 CDS IA1_02855 NC_022525.1 626313 627179 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methenyltetrahydrofolate cyclohydrolase complement(626313..627179) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612393.1 CDS fimA NC_022525.1 627726 628283 D Derived by automated computational analysis using gene prediction method: Protein Homology.; type-1 fimbrial protein subunit A 627726..628283 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612394.1 CDS IA1_02865 NC_022525.1 628358 628891 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimI 628358..628891 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612395.1 CDS IA1_02870 NC_022525.1 628914 629627 D involved in type 1 fimbriae biosynthesis, interacts with FimH; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone protein FimC 628914..629627 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612396.1 CDS IA1_02875 NC_022525.1 629658 632270 D involved in the export and assembly of fimbrial subunits FimA; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane usher protein FimD 629658..632270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612397.1 CDS fimH NC_022525.1 632285 633292 D involved in the regulation of fimbriae length and mediates adhesion of type 1 fimbriae; Derived by automated computational analysis using gene prediction method: Protein Homology.; adhesin 632285..633292 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612398.1 CDS fimF NC_022525.1 633302 633820 D Derived by automated computational analysis using gene prediction method: Protein Homology.; adhesin 633302..633820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612399.1 CDS IA1_02890 NC_022525.1 633866 634498 R activates the production of the major fimbrae protein FimA; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(633866..634498) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612400.1 CDS IA1_02895 NC_022525.1 635102 635824 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbriae Y protein complement(635102..635824) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612401.1 CDS IA1_02900 NC_022525.1 635843 636151 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; diguanylate cyclase complement(635843..636151) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612402.1 CDS IA1_02905 NC_022525.1 636316 636912 R regulates type 1 fimbriae expression; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbriae regulatory protein FimW complement(636316..636912) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612403.1 CDS IA1_02920 NC_022525.1 637582 637707 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(637582..637707) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612404.1 CDS IA1_02925 NC_022525.1 637900 638175 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(637900..638175) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612405.1 CDS IA1_02930 NC_022525.1 638913 639275 D Derived by automated computational analysis using gene prediction method: Protein Homology.; translocase 638913..639275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612406.1 CDS IA1_02935 NC_022525.1 639272 640198 D Derived by automated computational analysis using gene prediction method: Protein Homology.; bactoprenol glucosyl transferase 639272..640198 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612407.1 CDS IA1_02940 NC_022525.1 640317 641642 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 640317..641642 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612408.1 CDS IA1_02945 NC_022525.1 641686 641814 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(641686..641814) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612409.1 CDS IA1_02950 NC_022525.1 642280 642390 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(642280..642390) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612410.1 CDS IA1_02955 NC_022525.1 642418 642576 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(642418..642576) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612411.1 CDS IA1_02960 NC_022525.1 642648 642881 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(642648..642881) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612412.1 CDS IA1_02965 NC_022525.1 642969 644555 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(642969..644555) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612413.1 CDS IA1_02970 NC_022525.1 644552 645478 R Derived by automated computational analysis using gene prediction method: Protein Homology.; bactoprenol glucosyl transferase complement(644552..645478) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612414.1 CDS IA1_02975 NC_022525.1 645475 645837 R Derived by automated computational analysis using gene prediction method: Protein Homology.; translocase complement(645475..645837) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612415.1 CDS IA1_02980 NC_022525.1 646262 646507 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; copper-binding protein complement(646262..646507) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612416.1 CDS IA1_02985 NC_022525.1 646707 647036 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sensor kinase complement(646707..647036) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612417.1 CDS IA1_02990 NC_022525.1 647160 647324 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cation transporter 647160..647324 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612418.1 CDS IA1_02995 NC_022525.1 647375 648229 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(647375..648229) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612419.1 CDS IA1_03000 NC_022525.1 648445 649770 D Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridine nucleotide-disulfide oxidoreductase 648445..649770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612420.1 CDS IA1_03005 NC_022525.1 649927 650163 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 649927..650163 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612421.1 CDS IA1_03010 NC_022525.1 650176 650736 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 650176..650736 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612422.1 CDS IA1_03015 NC_022525.1 650823 651998 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair ATPase complement(650823..651998) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612423.1 CDS IA1_03020 NC_022525.1 652324 653718 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid transporter 652324..653718 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612424.1 CDS IA1_03025 NC_022525.1 653760 655007 R Derived by automated computational analysis using gene prediction method: Protein Homology.; miniconductance mechanosensitive channel complement(653760..655007) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612425.1 CDS IA1_03030 NC_022525.1 655318 657288 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lipase 655318..657288 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612426.1 CDS IA1_03035 NC_022525.1 657555 658208 R catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropteridine reductase complement(657555..658208) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612427.1 CDS IA1_03040 NC_022525.1 658305 658673 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(658305..658673) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612428.1 CDS IA1_03045 NC_022525.1 658673 659254 R Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator complement(658673..659254) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612429.1 CDS IA1_03050 NC_022525.1 659543 659884 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 659543..659884 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612430.1 CDS IA1_03055 NC_022525.1 659890 660138 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(659890..660138) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612431.1 CDS IA1_03060 NC_022525.1 660205 661323 R Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyl:cysteine ligase complement(660205..661323) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612432.1 CDS IA1_03065 NC_022525.1 661335 662039 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopantetheinyltransferase complement(661335..662039) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612433.1 CDS IA1_03070 NC_022525.1 662085 664340 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane receptor FepA complement(662085..664340) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612434.1 CDS IA1_03075 NC_022525.1 664529 665743 D Derived by automated computational analysis using gene prediction method: Protein Homology.; enterobactin/ferric enterobactin esterase 664529..665743 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612435.1 CDS IA1_03080 NC_022525.1 665774 665992 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 665774..665992 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612436.1 CDS entF NC_022525.1 665989 669873 D with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; enterobactin synthase subunit F 665989..669873 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612437.1 CDS IA1_03090 NC_022525.1 670123 671259 D in Salmonella is responsible for long O-antigen polymerization; may be part of the ferric enterobactin transport system; necessary for enetrobactin uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 670123..671259 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612438.1 CDS IA1_03095 NC_022525.1 671313 672107 R with FepBDE is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-enterobactin transporter ATP-binding protein complement(671313..672107) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612439.1 CDS IA1_03100 NC_022525.1 672104 673093 R with FepBCD is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-enterobactin transporter permease complement(672104..673093) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612440.1 CDS IA1_03105 NC_022525.1 673093 674100 R with FepBCG is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-enterobactin transporter membrane protein complement(673093..674100) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612441.1 CDS IA1_03110 NC_022525.1 674211 675455 D protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; enterobactin exporter EntS 674211..675455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612442.1 CDS IA1_03115 NC_022525.1 675518 676474 R with FepCDG is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; antibiotic ABC transporter substrate-binding protein complement(675518..676474) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612443.1 CDS IA1_03120 NC_022525.1 676783 677958 D Derived by automated computational analysis using gene prediction method: Protein Homology.; isochorismate synthase EntC 676783..677958 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612444.1 CDS entE NC_022525.1 677968 679578 D bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; Derived by automated computational analysis using gene prediction method: Protein Homology.; enterobactin synthase subunit E 677968..679578 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612445.1 CDS IA1_03130 NC_022525.1 679592 680449 D 2,3 dihydro-2,3 dihydroxybenzoate synthase; catalyzes the formation of 2,3 dihydro-2,3 dihydroxybenzoate and pyruvate from isochorismate; with Ent DEF is involved in enterobactin synthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; isochorismatase 679592..680449 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612446.1 CDS IA1_03135 NC_022525.1 680449 681204 D catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 2,3-dihydroxybenzoate-2,3-dehydrogenase 680449..681204 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612447.1 CDS IA1_03140 NC_022525.1 681207 681620 D required for efficient enterobactin production; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase 681207..681620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612448.1 CDS IA1_03145 NC_022525.1 681802 683907 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon starvation protein A 681802..683907 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612449.1 CDS IA1_03150 NC_022525.1 683971 684168 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 683971..684168 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612450.1 CDS IA1_03155 NC_022525.1 684204 685292 R member of the iron-containing alcohol dehydrogenase family; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(684204..685292) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612451.1 CDS IA1_03160 NC_022525.1 685419 686579 D catalyzes the transfer of an amino moiety; preference for methionine followed by histidine and phenylalanine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aminotransferase 685419..686579 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612452.1 CDS IA1_03165 NC_022525.1 686580 687110 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; immunoglobulin-binding regulator complement(686580..687110) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612453.1 CDS IA1_03170 NC_022525.1 687170 688405 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(687170..688405) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612454.1 CDS IA1_03175 NC_022525.1 688571 689473 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(688571..689473) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612455.1 CDS dsbG NC_022525.1 689790 690536 R Involved in disulfide bond formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; disulfide isomerase complement(689790..690536) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612456.1 CDS IA1_03185 NC_022525.1 690977 691540 D with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; alkyl hydroperoxide reductase subunit C 690977..691540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612457.1 CDS IA1_03190 NC_022525.1 691782 693347 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alkyl hydroperoxide reductase subunit F 691782..693347 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612458.1 CDS IA1_03195 NC_022525.1 693680 694240 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dehydrogenase 693680..694240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612459.1 CDS IA1_03200 NC_022525.1 694233 696512 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DMSO reductase subunit A 694233..696512 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612460.1 CDS IA1_03205 NC_022525.1 696509 697066 D oxidoreductase, Fe-S subunit; terminal electron transfer protein for the reduction of DMSO; Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit B 696509..697066 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612461.1 CDS IA1_03210 NC_022525.1 697066 697833 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 697066..697833 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612462.1 CDS IA1_03215 NC_022525.1 697901 698329 R interacts with GroEL; is induced by starvation, heat shock and toxic agents; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; universal stress protein G complement(697901..698329) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612463.1 CDS IA1_03220 NC_022525.1 698552 699790 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase 698552..699790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612464.1 CDS IA1_03225 NC_022525.1 699871 700281 R Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside diphosphate kinase regulator complement(699871..700281) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612465.1 CDS IA1_03230 NC_022525.1 700516 701322 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease I complement(700516..701322) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612466.1 CDS IA1_03240 NC_022525.1 701432 702895 R involved in the transport of citrate into the cell along with the export of succinate out of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter complement(701432..702895) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612467.1 CDS IA1_03245 NC_022525.1 702933 703829 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase complement(702933..703829) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612468.1 CDS IA1_03250 NC_022525.1 703801 704352 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase complement(703801..704352) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612469.1 CDS IA1_03255 NC_022525.1 704356 705885 R citrate-ACP transferase, the alpha subunit catalyzes the formation of (3S)-citryl-CoA from acetyl-CoA and citrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit alpha complement(704356..705885) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612470.1 CDS IA1_03260 NC_022525.1 705895 706803 R citryl-ACP lyase; catalyzes the formation of acetate and oxaloacetate from citrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit beta complement(705895..706803) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612471.1 CDS IA1_03265 NC_022525.1 706800 707096 R Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit gamma complement(706800..707096) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612472.1 CDS IA1_03270 NC_022525.1 707093 708169 R activates citrate lyase by acetylation of the gamma subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; [citrate [pro-3S]-lyase] ligase complement(707093..708169) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612473.1 CDS dpiB NC_022525.1 708554 710215 D regulates the expression of citrate fermentation genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase DpiB 708554..710215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612474.1 CDS dpiA NC_022525.1 710184 710864 D regulates the expression of citrate fermentation genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; two-protein response regulator DpiA 710184..710864 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612475.1 CDS dcuC NC_022525.1 710918 712303 R responsible for the transport of C4-dicarboxylates during anaerobic growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter complement(710918..712303) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612476.1 CDS pagP NC_022525.1 712673 713254 D catalyzes the transfer of palmitate to lipid A; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipid:lipid A palmitoyltransferase 712673..713254 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612477.1 CDS IA1_03295 NC_022525.1 713442 713651 D Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA chaperone/anti-terminator 713442..713651 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612478.1 CDS IA1_03300 NC_022525.1 713709 714023 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; camphor resistance protein CrcB complement(713709..714023) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612479.1 CDS IA1_03305 NC_022525.1 714183 714971 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 714183..714971 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612480.1 CDS tatE NC_022525.1 715100 715303 D TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit TatE 715100..715303 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612481.1 CDS IA1_03315 NC_022525.1 715389 716354 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoyl synthase complement(715389..716354) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612482.1 CDS IA1_03320 NC_022525.1 716560 717513 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(716560..717513) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612483.1 CDS IA1_03325 NC_022525.1 717815 718456 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoate-protein ligase B complement(717815..718456) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612484.1 CDS IA1_03330 NC_022525.1 718556 718819 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(718556..718819) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612485.1 CDS IA1_03335 NC_022525.1 718928 720139 R penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase complement(718928..720139) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612486.1 CDS IA1_03340 NC_022525.1 720279 721412 R septal ring protein, suppressor of prc, minor lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.; rare lipoprotein A complement(720279..721412) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612487.1 CDS IA1_03345 NC_022525.1 721423 722535 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell wall shape-determining protein complement(721423..722535) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612488.1 CDS IA1_03350 NC_022525.1 722538 724439 R Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 2 complement(722538..724439) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612489.1 CDS IA1_03355 NC_022525.1 724470 724937 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S rRNA methyltransferase complement(724470..724937) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612490.1 CDS IA1_03360 NC_022525.1 724941 725258 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-associated protein complement(724941..725258) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612491.1 CDS IA1_03365 NC_022525.1 725447 725587 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ribosome-associated protein, iojap-like protein complement(725447..725587) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612492.1 CDS IA1_03370 NC_022525.1 725587 726228 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ribazole phosphatase complement(725587..726228) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612493.1 CDS IA1_03375 NC_022525.1 726292 727386 D cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine-phosphate decarboxylase 726292..727386 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612494.1 CDS IA1_03380 NC_022525.1 727361 728011 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinic acid mononucleotide adenylyltransferase complement(727361..728011) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612495.1 CDS holA NC_022525.1 728004 729035 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit delta complement(728004..729035) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612496.1 CDS IA1_03390 NC_022525.1 729035 729625 R rare lipoprotein B; involved in the assembly of LPS in the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; LPS-assembly lipoprotein RlpB complement(729035..729625) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612497.1 CDS leuS NC_022525.1 729640 732222 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucyl-tRNA synthetase complement(729640..732222) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612498.1 CDS IA1_03400 NC_022525.1 732510 732800 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; D-galactarate dehydratase 732510..732800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612499.1 CDS IA1_03405 NC_022525.1 732763 733989 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; carbohydrate hydrolase 732763..733989 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612500.1 CDS IA1_03410 NC_022525.1 734039 734992 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxygluconate permease 734039..734992 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612501.1 CDS IA1_03415 NC_022525.1 735060 736988 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-54 dependent transcriptional regulator 735060..736988 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612502.1 CDS IA1_03420 NC_022525.1 737081 737554 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 737081..737554 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612503.1 CDS IA1_03425 NC_022525.1 737593 738588 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(737593..738588) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612504.1 CDS IA1_03430 NC_022525.1 738806 739420 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 738806..739420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612505.1 CDS IA1_03435 NC_022525.1 739417 740850 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; molecular chaperone 739417..740850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612506.1 CDS IA1_03440 NC_022525.1 740862 741557 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 740862..741557 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612507.1 CDS IA1_03445 NC_022525.1 741554 743017 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 741554..743017 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612508.1 CDS IA1_03450 NC_022525.1 743039 744718 R Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone HscC complement(743039..744718) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612509.1 CDS IA1_03455 NC_022525.1 744794 746032 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(744794..746032) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612510.1 CDS rihA NC_022525.1 746064 746999 R Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside hydrolase complement(746064..746999) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612511.1 CDS IA1_03465 NC_022525.1 747116 747841 R Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine ABC transporter ATP-binding protein complement(747116..747841) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612512.1 CDS IA1_03470 NC_022525.1 747841 748515 R with GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate/aspartate transporter permease GltK complement(747841..748515) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612513.1 CDS IA1_03475 NC_022525.1 748515 749255 R with GltIKL is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate/aspartate ABC transporter permease GltJ complement(748515..749255) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612514.1 CDS IA1_03480 NC_022525.1 749415 750323 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; amino acid transporter complement(749415..750323) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612515.1 CDS lnt NC_022525.1 750678 752216 R Transfers the fatty acyl group on membrane lipoproteins; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; apolipoprotein N-acyltransferase complement(750678..752216) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612516.1 CDS IA1_03490 NC_022525.1 752241 753119 R involved in the transport of magnesium and cobalt ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt transporter complement(752241..753119) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612517.1 CDS IA1_03495 NC_022525.1 753277 753750 R Derived by automated computational analysis using gene prediction method: Protein Homology.; metal-binding heat shock protein complement(753277..753750) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612518.1 CDS IA1_03500 NC_022525.1 753747 754793 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate hydrolase complement(753747..754793) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612519.1 CDS IA1_03505 NC_022525.1 754998 756422 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); Derived by automated computational analysis using gene prediction method: Protein Homology.; (dimethylallyl)adenosine tRNA methylthiotransferase complement(754998..756422) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612520.1 CDS ubiF NC_022525.1 756566 757741 D catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 756566..757741 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612521.1 CDS asnB NC_022525.1 758410 760074 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; asparagine synthetase B complement(758410..760074) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612522.1 CDS IA1_03535 NC_022525.1 760364 761116 R Derived by automated computational analysis using gene prediction method: Protein Homology.; UMP phosphatase complement(760364..761116) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612523.1 CDS IA1_03540 NC_022525.1 761163 762383 R regulates the synthesis of glucosamine and N-acetylglucosamine by acting as a repressor of the nagEBACD operon and both a repressor and activator of the glmSU operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(761163..762383) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612524.1 CDS nagA NC_022525.1 762388 763542 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylglucosamine-6-phosphate deacetylase complement(762388..763542) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612525.1 CDS nagB NC_022525.1 763602 764402 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosamine-6-phosphate deaminase complement(763602..764402) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612526.1 CDS IA1_03555 NC_022525.1 764729 766681 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylglucosamine transporter subunit IIABC 764729..766681 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612527.1 CDS IA1_03560 NC_022525.1 766892 768559 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaminyl-tRNA synthetase 766892..768559 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612528.1 CDS chiP NC_022525.1 769220 770626 D outer membrane porin involved in the transport of chitooligosaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.; chitoporin 769220..770626 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612529.1 CDS IA1_03570 NC_022525.1 770676 771008 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 770676..771008 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612530.1 CDS IA1_03575 NC_022525.1 771057 772361 R Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate:proton symporter complement(771057..772361) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612531.1 CDS tcuB NC_022525.1 772412 773551 R with CitA (TcuA) catalyzes the oxidation of tricarballylate to cis-aconitate; originally thought to be involved in citrate utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; tricarballylate utilization protein B complement(772412..773551) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612532.1 CDS IA1_03585 NC_022525.1 773538 774941 R catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; Derived by automated computational analysis using gene prediction method: Protein Homology.; tricarballylate dehydrogenase complement(773538..774941) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612533.1 CDS IA1_03590 NC_022525.1 775039 775965 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(775039..775965) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612534.1 CDS fur NC_022525.1 776080 776532 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferric uptake regulator complement(776080..776532) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612535.1 CDS IA1_03600 NC_022525.1 776814 777344 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavodoxin complement(776814..777344) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612536.1 CDS IA1_03605 NC_022525.1 777495 777788 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LexA regulated protein complement(777495..777788) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612537.1 CDS IA1_03610 NC_022525.1 777922 778692 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase complement(777922..778692) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612538.1 CDS IA1_03615 NC_022525.1 778877 779419 D negative modulator of the initiation of chromosome replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; replication initiation regulator SeqA 778877..779419 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612539.1 CDS IA1_03620 NC_022525.1 779444 781084 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglucomutase 779444..781084 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612540.1 CDS IA1_03625 NC_022525.1 781199 781684 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-nitroimidazole antibiotic resistance protein complement(781199..781684) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612541.1 CDS potE NC_022525.1 781749 783068 R catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine transporter complement(781749..783068) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612542.1 CDS IA1_03635 NC_022525.1 783065 785263 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine decarboxylase complement(783065..785263) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612543.1 CDS IA1_03640 NC_022525.1 785661 785774 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 785661..785774 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612544.1 CDS IA1_03645 NC_022525.1 786025 786702 R response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(786025..786702) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612545.1 CDS IA1_03650 NC_022525.1 786699 789383 R sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein KdpD complement(786699..789383) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612546.1 CDS IA1_03655 NC_022525.1 789380 789967 R One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium-transporting ATPase subunit C complement(789380..789967) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612547.1 CDS IA1_03660 NC_022525.1 789973 792021 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium-transporting ATPase subunit B complement(789973..792021) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612548.1 CDS IA1_03665 NC_022525.1 792042 793721 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium-transporting ATPase subunit A complement(792042..793721) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612549.1 CDS kdpF NC_022525.1 793721 793810 R one of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; potassium transporter TrkA complement(793721..793810) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612550.1 CDS IA1_03675 NC_022525.1 794147 794353 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 794147..794353 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612551.1 CDS IA1_03680 NC_022525.1 794464 795885 D UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyribodipyrimidine photolyase 794464..795885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612552.1 CDS IA1_03685 NC_022525.1 795924 797405 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(795924..797405) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612553.1 CDS IA1_03690 NC_022525.1 797734 798477 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; metal-binding protein 797734..798477 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612554.1 CDS IA1_03695 NC_022525.1 798493 799149 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 798493..799149 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612555.1 CDS IA1_03700 NC_022525.1 799143 800075 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 799143..800075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612556.1 CDS IA1_03705 NC_022525.1 800065 800799 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LamB/YcsF family protein 800065..800799 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612557.1 CDS IA1_03710 NC_022525.1 800921 801712 D 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; endoribonuclease SymE 800921..801712 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612558.1 CDS IA1_03715 NC_022525.1 801767 802813 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AbrB family transcriptional regulator complement(801767..802813) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612559.1 CDS gltA NC_022525.1 802949 804232 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; type II citrate synthase complement(802949..804232) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612560.1 CDS sdhC NC_022525.1 804972 805376 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; succinate dehydrogenase cytochrome b556 large membrane subunit 804972..805376 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612561.1 CDS sdhD NC_022525.1 805370 805717 D Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase cytochrome b556 small membrane subunit 805370..805717 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612562.1 CDS sdhA NC_022525.1 805717 807483 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase flavoprotein subunit 805717..807483 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612563.1 CDS sdhB NC_022525.1 807497 808216 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase iron-sulfur subunit 807497..808216 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612564.1 CDS IA1_03745 NC_022525.1 808740 811541 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxoglutarate dehydrogenase E1 808740..811541 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612565.1 CDS IA1_03750 NC_022525.1 811556 812764 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoamide succinyltransferase 811556..812764 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612566.1 CDS sucC NC_022525.1 812906 814072 D catalyzes the interconversion of succinyl-CoA and succinate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate--CoA ligase subunit beta 812906..814072 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612567.1 CDS IA1_03760 NC_022525.1 814072 814941 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyl-CoA synthetase subunit alpha 814072..814941 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612568.1 CDS IA1_03765 NC_022525.1 816317 816397 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(816317..816397) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612569.1 CDS IA1_03770 NC_022525.1 816524 818092 D part of the aerobic respiratory chain; catalyzes the ubiquinol to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit I 816524..818092 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612570.1 CDS IA1_03775 NC_022525.1 818108 819247 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit II 818108..819247 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612571.1 CDS IA1_03780 NC_022525.1 819262 819375 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 819262..819375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612572.1 CDS IA1_03785 NC_022525.1 819375 819668 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 819375..819668 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612573.1 CDS IA1_03790 NC_022525.1 819897 820301 D catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acyl-CoA thioesterase 819897..820301 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612574.1 CDS IA1_03795 NC_022525.1 820298 820990 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; Derived by automated computational analysis using gene prediction method: Protein Homology.; colicin transporter 820298..820990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612575.1 CDS IA1_03800 NC_022525.1 820994 821422 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; Derived by automated computational analysis using gene prediction method: Protein Homology.; colicin transporter 820994..821422 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612576.1 CDS IA1_03805 NC_022525.1 821487 822665 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein TolA 821487..822665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612577.1 CDS tolB NC_022525.1 822786 824081 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.; translocation protein TolB 822786..824081 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612578.1 CDS IA1_03815 NC_022525.1 824116 824640 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidoglycan-associated outer membrane lipoprotein 824116..824640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612579.1 CDS IA1_03820 NC_022525.1 824650 825438 D periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; Derived by automated computational analysis using gene prediction method: Protein Homology.; tol-pal system protein YbgF 824650..825438 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612580.1 CDS IA1_03850 NC_022525.1 827151 828194 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; quinolinate synthetase 827151..828194 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612581.1 CDS IA1_03855 NC_022525.1 828219 828938 D involved in nicotinamide riboside transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinamide riboside transporter PnuC 828219..828938 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612582.1 CDS IA1_03860 NC_022525.1 828935 829873 R involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter ZitB complement(828935..829873) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612583.1 CDS IA1_03865 NC_022525.1 829984 830370 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(829984..830370) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612584.1 CDS IA1_03870 NC_022525.1 830690 831742 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-2-dehydro-3-deoxyheptonate aldolase 830690..831742 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612585.1 CDS IA1_03875 NC_022525.1 831836 832381 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase complement(831836..832381) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612586.1 CDS IA1_03880 NC_022525.1 832396 833241 R Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase complement(832396..833241) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612587.1 CDS IA1_03885 NC_022525.1 833371 834261 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 833371..834261 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612588.1 CDS IA1_03890 NC_022525.1 834262 835245 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(834262..835245) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612589.1 CDS IA1_03895 NC_022525.1 835468 836736 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transporter 835468..836736 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612590.1 CDS IA1_03900 NC_022525.1 836786 837031 D catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase subunit gamma 836786..837031 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612591.1 CDS IA1_03905 NC_022525.1 837047 838816 D catalyzes the formation of pyruvate from oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase 837047..838816 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612592.1 CDS IA1_03910 NC_022525.1 838829 840130 D catalyzes the formation of pyruvate from oxaloacetate; sodium translocating; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase subunit beta 838829..840130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612593.1 CDS IA1_03915 NC_022525.1 840249 840947 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 840249..840947 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612594.1 CDS IA1_03920 NC_022525.1 841327 842406 D Derived by automated computational analysis using gene prediction method: Protein Homology.; iron ABC transporter permease 841327..842406 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612595.1 CDS IA1_03925 NC_022525.1 842406 843182 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; iron ABC transporter ATP-binding protein 842406..843182 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612596.1 CDS gpmA NC_022525.1 843273 844025 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglyceromutase complement(843273..844025) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612597.1 CDS galM NC_022525.1 844249 845289 R mutarotase; catalyzes the conversion of beta-galactose to the alpha-anomer; links the metabolism of lactose and galactose; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactose-1-epimerase complement(844249..845289) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612598.1 CDS IA1_03940 NC_022525.1 845283 846431 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactokinase complement(845283..846431) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612599.1 CDS IA1_03945 NC_022525.1 846434 847480 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactose-1-phosphate uridylyltransferase complement(846434..847480) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612600.1 CDS IA1_03950 NC_022525.1 847491 848507 R Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-galactose-4-epimerase complement(847491..848507) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612601.1 CDS IA1_03955 NC_022525.1 848730 849638 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(848730..849638) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612602.1 CDS IA1_03960 NC_022525.1 849809 851284 R contains 2 ATP-binding cassettes; involved in the transport of molybdenum; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum ABC transporter ATP-binding protein complement(849809..851284) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612603.1 CDS IA1_03965 NC_022525.1 851352 852140 R represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(851352..852140) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612604.1 CDS IA1_03970 NC_022525.1 852269 852418 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 852269..852418 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612605.1 CDS modA NC_022525.1 852586 853359 D with ModCB is involved in the high-affinity transport of molybdate; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum ABC transporter substrate-binding protein 852586..853359 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612606.1 CDS modB NC_022525.1 853359 854048 D part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdate ABC transporter permease 853359..854048 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612607.1 CDS modC NC_022525.1 854051 855109 D Part of the ABC transporter complex modABC involved in molybdenum import; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdate ABC transporter ATP-binding protein 854051..855109 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612608.1 CDS IA1_03990 NC_022525.1 855110 855970 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxal phosphate phosphatase complement(855110..855970) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612609.1 CDS IA1_03995 NC_022525.1 856092 857087 D catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphogluconolactonase 856092..857087 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612610.1 CDS IA1_04000 NC_022525.1 857225 858508 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA thioesterase complement(857225..858508) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612611.1 CDS IA1_04005 NC_022525.1 858746 859969 D Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazolonepropionase 858746..859969 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612612.1 CDS IA1_04010 NC_022525.1 859966 860907 D catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; formimidoylglutamase 859966..860907 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612613.1 CDS IA1_04015 NC_022525.1 860952 861677 D Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine utilization repressor 860952..861677 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612614.1 CDS IA1_04020 NC_022525.1 861873 863558 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; urocanate hydratase 861873..863558 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612615.1 CDS IA1_04025 NC_022525.1 863560 865080 D catalyzes the degradation of histidine to urocanate and ammmonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine ammonia-lyase 863560..865080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612616.1 CDS IA1_04030 NC_022525.1 865165 865641 R YbhB; similar to rat and human kinase inhibitory proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; kinase inhibitor protein complement(865165..865641) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612617.1 CDS IA1_04035 NC_022525.1 865699 866988 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosylmethionine--8-amino-7-oxononanoate aminotransferase complement(865699..866988) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612618.1 CDS IA1_04040 NC_022525.1 867075 868115 D catalyzes the formation of biotin from dethiobiotin; Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin synthase 867075..868115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612619.1 CDS IA1_04045 NC_022525.1 868112 869269 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 8-amino-7-oxononanoate synthase 868112..869269 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612620.1 CDS IA1_04050 NC_022525.1 869253 870008 D methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin biosynthesis protein BioC 869253..870008 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612621.1 CDS bioD NC_022525.1 870001 870687 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; Derived by automated computational analysis using gene prediction method: Protein Homology.; dithiobiotin synthetase 870001..870687 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612622.1 CDS IA1_04060 NC_022525.1 871338 873359 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit B 871338..873359 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612623.1 CDS IA1_04065 NC_022525.1 873850 876114 D secreted by salmonella pathogenicity islands 1 and 2; involved in survival of Salmonella in host cells; interferes with host cell ubiquination pathway; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; E3 ubiquitin-protein ligase SlrP 873850..876114 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612624.1 CDS IA1_04070 NC_022525.1 876209 877117 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(876209..877117) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612625.1 CDS moaA NC_022525.1 877514 878503 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum cofactor biosynthesis protein A 877514..878503 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612626.1 CDS IA1_04080 NC_022525.1 878525 879037 D Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin biosynthesis protein B 878525..879037 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612627.1 CDS moaC NC_022525.1 879040 879525 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum cofactor biosynthesis protein MoaC 879040..879525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612628.1 CDS moaD NC_022525.1 879518 879763 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin synthase small subunit 879518..879763 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612629.1 CDS moaE NC_022525.1 879765 880217 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin guanine dinucleotide biosynthesis protein MoaE 879765..880217 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612630.1 CDS IA1_04100 NC_022525.1 880265 880969 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 880265..880969 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612631.1 CDS IA1_04105 NC_022525.1 881116 881823 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 881116..881823 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612632.1 CDS IA1_04110 NC_022525.1 881856 882455 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 881856..882455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612633.1 CDS IA1_04115 NC_022525.1 882463 883023 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 882463..883023 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612634.1 CDS IA1_04120 NC_022525.1 883026 883988 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(883026..883988) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612635.1 CDS IA1_04125 NC_022525.1 883988 885229 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cardiolipin synthase 2 complement(883988..885229) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612636.1 CDS IA1_04130 NC_022525.1 885226 885984 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(885226..885984) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612637.1 CDS IA1_04135 NC_022525.1 886117 886527 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 886117..886527 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612638.1 CDS IA1_04140 NC_022525.1 886489 887595 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(886489..887595) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612639.1 CDS IA1_04145 NC_022525.1 887711 888841 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(887711..888841) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612640.1 CDS IA1_04150 NC_022525.1 888834 890570 R Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein complement(888834..890570) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612641.1 CDS IA1_04155 NC_022525.1 890563 891558 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(890563..891558) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612642.1 CDS IA1_04160 NC_022525.1 891558 892232 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(891558..892232) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612643.1 CDS IA1_04165 NC_022525.1 892462 893823 D this helicase is not essential cell growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 892462..893823 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612644.1 CDS dinG NC_022525.1 894031 896175 D helicase involved in DNA repair and perhaps also replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase DinG 894031..896175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612645.1 CDS IA1_04175 NC_022525.1 896205 897179 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase 896205..897179 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612646.1 CDS IA1_04180 NC_022525.1 897335 897595 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(897335..897595) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612647.1 CDS IA1_04185 NC_022525.1 897880 898146 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(897880..898146) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612648.1 CDS IA1_04190 NC_022525.1 898351 899277 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 898351..899277 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612649.1 CDS IA1_04195 NC_022525.1 899274 901496 R Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive channel protein complement(899274..901496) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612650.1 CDS IA1_04200 NC_022525.1 901495 901632 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 901495..901632 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612651.1 CDS IA1_04205 NC_022525.1 901615 902337 R Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine ABC transporter ATP-binding protein complement(901615..902337) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612652.1 CDS glnP NC_022525.1 902334 902993 R similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine ABC transporter permease complement(902334..902993) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612653.1 CDS glnH NC_022525.1 903137 903883 R similar to periplasmic-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein complement(903137..903883) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612654.1 CDS IA1_04220 NC_022525.1 903880 903966 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(903880..903966) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612655.1 CDS IA1_04225 NC_022525.1 904360 904863 R binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA starvation/stationary phase protection protein Dps complement(904360..904863) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612656.1 CDS IA1_04230 NC_022525.1 905166 906053 R Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine transporter RhtB complement(905166..906053) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612657.1 CDS ompX NC_022525.1 906407 906922 D OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein X 906407..906922 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612658.1 CDS IA1_04240 NC_022525.1 906985 908565 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphoethanolamine transferase complement(906985..908565) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612659.1 CDS IA1_04245 NC_022525.1 908731 908901 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 908731..908901 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612660.1 CDS IA1_04250 NC_022525.1 909144 909617 D Transcriptional regulator that represses the manganese transporter MntH when manganese is present; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 909144..909617 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612661.1 CDS IA1_04255 NC_022525.1 909614 910726 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 909614..910726 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612662.1 CDS IA1_04260 NC_022525.1 910770 911690 R catalyzes th removal of D-alanine and attachment of the murein lipoprotein to the peptidoglycan tetrapeptide chain; Derived by automated computational analysis using gene prediction method: Protein Homology.; L,D-transpeptidase complement(910770..911690) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612663.1 CDS IA1_04265 NC_022525.1 911909 913501 D Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter ATP-binding protein 911909..913501 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612664.1 CDS IA1_04270 NC_022525.1 913957 914853 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 913957..914853 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612665.1 CDS IA1_04275 NC_022525.1 914882 915415 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar phosphatase complement(914882..915415) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612666.1 CDS IA1_04280 NC_022525.1 915809 917074 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(915809..917074) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612667.1 CDS IA1_04285 NC_022525.1 917336 918145 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar phosphatase 917336..918145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612668.1 CDS IA1_04290 NC_022525.1 918223 920655 R Derived by automated computational analysis using gene prediction method: Protein Homology.; formate acetyltransferase complement(918223..920655) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612669.1 CDS IA1_04295 NC_022525.1 920661 921560 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate formate-lyase 3-activating protein complement(920661..921560) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612670.1 CDS IA1_04300 NC_022525.1 921838 922587 R Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin-synthase adenylyltransferase complement(921838..922587) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612671.1 CDS IA1_04305 NC_022525.1 922587 923822 R is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin biosynthesis protein MoeA complement(922587..923822) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612672.1 CDS IA1_04310 NC_022525.1 924025 924966 D Derived by automated computational analysis using gene prediction method: Protein Homology.; isoaspartyl peptidase 924025..924966 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612673.1 CDS IA1_04315 NC_022525.1 924977 926848 D with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein 924977..926848 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612674.1 CDS IA1_04320 NC_022525.1 926881 928419 D with GsiACD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glutathione ABC transporter substrate-binding protein GsiB 926881..928419 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612675.1 CDS IA1_04325 NC_022525.1 928480 929400 D with GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter permease 928480..929400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612676.1 CDS IA1_04330 NC_022525.1 929403 930314 D with GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter permease GsiD 929403..930314 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612677.1 CDS rimO NC_022525.1 930405 931730 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal protein S12 methylthiotransferase complement(930405..931730) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612678.1 CDS IA1_04340 NC_022525.1 931961 932344 D Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm formation regulatory protein BssR 931961..932344 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612679.1 CDS IA1_04345 NC_022525.1 933057 933572 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 933057..933572 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612680.1 CDS IA1_04350 NC_022525.1 933595 934344 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; electron transfer flavoprotein subunit beta 933595..934344 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612681.1 CDS IA1_04355 NC_022525.1 934355 935308 D Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein subunit beta 934355..935308 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612682.1 CDS IA1_04360 NC_022525.1 935341 935604 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acyl dehydratase 935341..935604 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612683.1 CDS IA1_04365 NC_022525.1 935601 936764 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase 935601..936764 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612684.1 CDS IA1_04370 NC_022525.1 937213 938898 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dehydrogenase 937213..938898 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612685.1 CDS IA1_04375 NC_022525.1 938904 939794 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(938904..939794) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612686.1 CDS IA1_04380 NC_022525.1 940059 940484 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(940059..940484) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612687.1 CDS IA1_04385 NC_022525.1 940831 941301 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glucose dehydrogenase 940831..941301 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612688.1 CDS IA1_04390 NC_022525.1 941350 941511 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 941350..941511 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612689.1 CDS IA1_04395 NC_022525.1 941508 942134 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase complement(941508..942134) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612690.1 CDS IA1_04400 NC_022525.1 942378 943580 D penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase 942378..943580 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612691.1 CDS IA1_04405 NC_022525.1 943626 944384 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(943626..944384) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612692.1 CDS IA1_04410 NC_022525.1 944456 945130 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; UDP pyrophosphate phosphatase complement(944456..945130) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612693.1 CDS IA1_04415 NC_022525.1 945377 946609 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 945377..946609 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612694.1 CDS IA1_04420 NC_022525.1 946663 947478 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar phosphatase SupH complement(946663..947478) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612695.1 CDS IA1_04425 NC_022525.1 947475 948686 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(947475..948686) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612696.1 CDS IA1_04430 NC_022525.1 948854 949474 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 948854..949474 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612697.1 CDS IA1_04435 NC_022525.1 949591 951276 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(949591..951276) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612698.1 CDS IA1_04440 NC_022525.1 951547 951924 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 951547..951924 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612699.1 CDS grxA NC_022525.1 951956 952219 R functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin complement(951956..952219) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612700.1 CDS IA1_04450 NC_022525.1 952389 952679 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 952389..952679 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612701.1 CDS IA1_04455 NC_022525.1 952663 953385 D NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; nitroreductase A 952663..953385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612702.1 CDS IA1_04460 NC_022525.1 953443 954345 D responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal protein S6 modification protein 953443..954345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612703.1 CDS IA1_04465 NC_022525.1 954442 954918 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 954442..954918 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612704.1 CDS IA1_04470 NC_022525.1 955267 956379 D Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter substrate-binding protein 955267..956379 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612705.1 CDS potG NC_022525.1 956467 957600 D part of the PotFGHI ATP-dependent putrescine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter ATP-binding protein 956467..957600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612706.1 CDS IA1_04480 NC_022525.1 957610 958563 D Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease 957610..958563 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612707.1 CDS IA1_04485 NC_022525.1 958560 959405 D Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease 958560..959405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612708.1 CDS IA1_04490 NC_022525.1 959389 959952 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 959389..959952 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612709.1 CDS rumB NC_022525.1 959995 961125 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 959995..961125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612710.1 CDS IA1_04500 NC_022525.1 961408 962751 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS ascorbate transporter subunit IIC 961408..962751 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612711.1 CDS IA1_04505 NC_022525.1 962781 963101 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter IIB 962781..963101 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612712.1 CDS IA1_04510 NC_022525.1 963111 964598 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfatase 963111..964598 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612713.1 CDS IA1_04515 NC_022525.1 964817 965548 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine ABC transporter substrate-binding protein complement(964817..965548) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612714.1 CDS artM NC_022525.1 965785 966453 R with ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine transporter permease subunit ArtM complement(965785..966453) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612715.1 CDS IA1_04525 NC_022525.1 966453 967169 R with ArtPMJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine transporter permease subunit ArtQ complement(966453..967169) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612716.1 CDS IA1_04530 NC_022525.1 967176 967907 R with ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine ABC transporter substrate-binding protein complement(967176..967907) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612717.1 CDS IA1_04535 NC_022525.1 967925 968653 R Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter ATP-binding protein complement(967925..968653) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612718.1 CDS IA1_04540 NC_022525.1 968883 969398 R induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(968883..969398) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612719.1 CDS IA1_04545 NC_022525.1 969526 969849 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 969526..969849 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612720.1 CDS IA1_04550 NC_022525.1 969846 970676 D catalyzes the cleavage of the bond between muamic acid and l-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase 969846..970676 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612721.1 CDS IA1_04555 NC_022525.1 970673 971686 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(970673..971686) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612722.1 CDS IA1_04560 NC_022525.1 971782 973215 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(971782..973215) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612723.1 CDS IA1_04565 NC_022525.1 973226 974227 R low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine; Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine aldolase complement(973226..974227) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612724.1 CDS IA1_04570 NC_022525.1 974266 975984 R catalyzes the formation of acetate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate dehydrogenase complement(974266..975984) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612725.1 CDS IA1_04575 NC_022525.1 976142 977113 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(976142..977113) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612726.1 CDS IA1_04580 NC_022525.1 977122 978774 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxylamine reductase complement(977122..978774) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612727.1 CDS IA1_04585 NC_022525.1 978918 979817 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(978918..979817) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612728.1 CDS IA1_04590 NC_022525.1 980019 981677 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 980019..981677 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612729.1 CDS IA1_04595 NC_022525.1 981674 982624 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; VirK complement(981674..982624) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612730.1 CDS IA1_04600 NC_022525.1 982770 983888 D confers macrolide resistance via active drug efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; macrolide transporter subunit MacA 982770..983888 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612731.1 CDS IA1_04605 NC_022525.1 983885 985831 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter 983885..985831 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612732.1 CDS IA1_04610 NC_022525.1 985961 986182 R inhibits DNA replication at both initiation and elongation steps; stationary phase and starvation inducible; Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein complement(985961..986182) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612733.1 CDS clpS NC_022525.1 986506 986826 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent Clp protease adaptor protein ClpS 986506..986826 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612734.1 CDS clpA NC_022525.1 986857 989133 D ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent Clp protease ATP-binding protein 986857..989133 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612735.1 CDS IA1_04630 NC_022525.1 989815 990492 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinamidase complement(989815..990492) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612736.1 CDS IA1_04635 NC_022525.1 990512 991372 R Derived by automated computational analysis using gene prediction method: Protein Homology.; quercetin 2,3-dioxygenase complement(990512..991372) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612737.1 CDS IA1_04640 NC_022525.1 991481 992392 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 991481..992392 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612738.1 CDS IA1_04645 NC_022525.1 992483 992701 R Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor IF-1 complement(992483..992701) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612739.1 CDS aat NC_022525.1 993013 993717 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucyl/phenylalanyl-tRNA--protein transferase complement(993013..993717) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612740.1 CDS IA1_04655 NC_022525.1 993762 995483 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein complement(993762..995483) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612741.1 CDS IA1_04660 NC_022525.1 995484 997250 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein complement(995484..997250) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612742.1 CDS IA1_04665 NC_022525.1 997364 998332 R catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin reductase complement(997364..998332) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612743.1 CDS IA1_04670 NC_022525.1 998879 999373 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; AsnC family transcriptional regulator 998879..999373 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612744.1 CDS IA1_04675 NC_022525.1 999508 1003470 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cell division protein FtsK 999508..1003470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612745.1 CDS lolA NC_022525.1 1003610 1004224 D participates with LolB in the incorporation of lipoprotein into the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein chaperone 1003610..1004224 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612746.1 CDS IA1_04685 NC_022525.1 1004234 1005577 D Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase RarA 1004234..1005577 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612747.1 CDS IA1_04690 NC_022525.1 1005836 1007128 D Derived by automated computational analysis using gene prediction method: Protein Homology.; seryl-tRNA synthetase 1005836..1007128 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612748.1 CDS IA1_04695 NC_022525.1 1007366 1009810 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit A 1007366..1009810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612749.1 CDS IA1_04700 NC_022525.1 1009821 1010438 D oxidoreductase, Fe-S subunit; terminal electron transfer protein for the reduction of DMSO; Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit B 1009821..1010438 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612750.1 CDS IA1_04705 NC_022525.1 1010440 1011303 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit C 1010440..1011303 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612751.1 CDS IA1_04710 NC_022525.1 1011653 1012801 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 1011653..1012801 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612752.1 CDS IA1_04715 NC_022525.1 1013019 1014440 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1013019..1014440 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612753.1 CDS pflA NC_022525.1 1014733 1015530 R activates pyruvate formate-lyase 1 under anaerobic conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate formate lyase-activating protein complement(1014733..1015530) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612754.1 CDS IA1_04725 NC_022525.1 1015649 1015816 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1015649..1015816) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612755.1 CDS IA1_04730 NC_022525.1 1016106 1017065 D involved in bacterial survival in the host cell; involved in macrophage replication and filament formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 1 protein SopD2 1016106..1017065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612756.1 CDS IA1_04735 NC_022525.1 1017141 1019423 R formate acetyltransferase; catalyzes the formation of formate and acetyl-CoA from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; keto-acid formate acetyltransferase complement(1017141..1019423) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612757.1 CDS IA1_04740 NC_022525.1 1019483 1020340 R Derived by automated computational analysis using gene prediction method: Protein Homology.; formate transporter complement(1019483..1020340) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612758.1 CDS IA1_04745 NC_022525.1 1020745 1022538 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1020745..1022538) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612759.1 CDS IA1_04750 NC_022525.1 1022642 1023334 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1022642..1023334 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612760.1 CDS IA1_04755 NC_022525.1 1023520 1024608 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; catalyzes 4 phosphohydroxy L-threonine from 2-oxo 3 hydroxy 4- phosphobutanoate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phosphoserine/phosphohydroxythreonine aminotransferase 1023520..1024608 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612761.1 CDS IA1_04760 NC_022525.1 1024679 1025962 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phosphoshikimate 1-carboxyvinyltransferase 1024679..1025962 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612762.1 CDS IA1_04765 NC_022525.1 1026105 1026866 D Derived by automated computational analysis using gene prediction method: Protein Homology.; metalloprotease 1026105..1026866 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612763.1 CDS cmk NC_022525.1 1027039 1027722 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytidylate kinase 1027039..1027722 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612764.1 CDS rpsA NC_022525.1 1027836 1029509 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S1 1027836..1029509 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612765.1 CDS ihfB NC_022525.1 1029665 1029949 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; Derived by automated computational analysis using gene prediction method: Protein Homology.; integration host factor subunit beta 1029665..1029949 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612766.1 CDS IA1_04785 NC_022525.1 1030179 1032443 D Derived by automated computational analysis using gene prediction method: Protein Homology.; competence protein ComEC 1030179..1032443 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612767.1 CDS IA1_04790 NC_022525.1 1032480 1034228 D involved in the transport of lipid A across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein 1032480..1034228 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612768.1 CDS lpxK NC_022525.1 1034225 1035202 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; tetraacyldisaccharide 4'-kinase 1034225..1035202 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612769.1 CDS IA1_04800 NC_022525.1 1035246 1036478 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1035246..1036478 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612770.1 CDS IA1_04805 NC_022525.1 1036530 1036712 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1036530..1036712 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612771.1 CDS IA1_04810 NC_022525.1 1036709 1037455 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-manno-octulosonate cytidylyltransferase 1036709..1037455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612772.1 CDS IA1_04815 NC_022525.1 1037666 1038559 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1037666..1038559 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612773.1 CDS IA1_04820 NC_022525.1 1038539 1039315 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1038539..1039315) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612774.1 CDS IA1_04825 NC_022525.1 1039451 1040254 D Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosyl-L-methionine-dependent methyltransferase 1039451..1040254 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612775.1 CDS IA1_04830 NC_022525.1 1040247 1041569 D acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; condesin subunit F 1040247..1041569 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612776.1 CDS IA1_04835 NC_022525.1 1041550 1042254 D acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; condesin subunit E 1041550..1042254 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612777.1 CDS mukB NC_022525.1 1042254 1046720 D SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cell division protein MukB 1042254..1046720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612778.1 CDS IA1_04845 NC_022525.1 1047065 1048912 D catalyzes the formation of a meso-diaminopimelyl- meso-diaminopimelyl crosslink; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein L,D-transpeptidase 1047065..1048912 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612779.1 CDS IA1_04850 NC_022525.1 1049170 1049718 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1049170..1049718 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612780.1 CDS IA1_04855 NC_022525.1 1049746 1050393 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1049746..1050393 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612781.1 CDS IA1_04860 NC_022525.1 1050455 1051645 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid aminotransferase complement(1050455..1051645) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612782.1 CDS IA1_04865 NC_022525.1 1051830 1052921 R Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein F complement(1051830..1052921) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612783.1 CDS IA1_04870 NC_022525.1 1053527 1054927 R Derived by automated computational analysis using gene prediction method: Protein Homology.; asparaginyl-tRNA synthetase complement(1053527..1054927) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612784.1 CDS IA1_04875 NC_022525.1 1055128 1055589 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein complement(1055128..1055589) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612785.1 CDS IA1_04880 NC_022525.1 1055586 1055807 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1055586..1055807) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612786.1 CDS IA1_04885 NC_022525.1 1055906 1057120 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; diaminopropionate ammonia-lyase 1055906..1057120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612787.1 CDS IA1_04890 NC_022525.1 1057366 1058799 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; amino acid:proton symporter 1057366..1058799 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612788.1 CDS IA1_04895 NC_022525.1 1058880 1060082 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinate phosphoribosyltransferase complement(1058880..1060082) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612789.1 CDS IA1_04900 NC_022525.1 1060277 1061569 R Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase complement(1060277..1061569) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612790.1 CDS IA1_04905 NC_022525.1 1061614 1061862 R Derived by automated computational analysis using gene prediction method: Protein Homology.; excisionase complement(1061614..1061862) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612791.1 CDS IA1_04910 NC_022525.1 1061903 1062142 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1061903..1062142) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612792.1 CDS IA1_04915 NC_022525.1 1062185 1063294 R Derived by automated computational analysis using gene prediction method: Protein Homology.; enterohemolysin complement(1062185..1063294) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612793.1 CDS IA1_04920 NC_022525.1 1063305 1066232 R Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease complement(1063305..1066232) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612794.1 CDS IA1_04925 NC_022525.1 1066359 1066646 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA breaking-rejoining protein complement(1066359..1066646) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612795.1 CDS IA1_04930 NC_022525.1 1066731 1066901 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA breaking-rejoining protein complement(1066731..1066901) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612796.1 CDS IA1_04935 NC_022525.1 1066894 1067010 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1066894..1067010) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612797.1 CDS IA1_04940 NC_022525.1 1067298 1067504 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1067298..1067504 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612798.1 CDS IA1_04945 NC_022525.1 1067531 1068472 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1067531..1068472) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612799.1 CDS IA1_04950 NC_022525.1 1068578 1068973 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1068578..1068973) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612800.1 CDS IA1_04955 NC_022525.1 1069078 1069314 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Rha family transcriptional regulator 1069078..1069314 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612801.1 CDS IA1_04960 NC_022525.1 1069334 1069654 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; repressor 1069334..1069654 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612802.1 CDS IA1_04965 NC_022525.1 1069739 1070722 D Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 1069739..1070722 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612803.1 CDS IA1_04970 NC_022525.1 1070725 1071474 D acts to load the DnaB helicase onto the initiation site during DNA replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA replication protein DnaC 1070725..1071474 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612804.1 CDS IA1_04975 NC_022525.1 1071485 1071832 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA-binding protein 1071485..1071832 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612805.1 CDS IA1_04980 NC_022525.1 1071829 1072149 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1071829..1072149 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612806.1 CDS IA1_04985 NC_022525.1 1072149 1072394 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1072149..1072394 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612807.1 CDS IA1_04990 NC_022525.1 1072705 1073922 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1072705..1073922 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612808.1 CDS IA1_04995 NC_022525.1 1074065 1074391 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1074065..1074391 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612809.1 CDS IA1_05000 NC_022525.1 1074639 1074872 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA damage-inducible protein I 1074639..1074872 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612810.1 CDS IA1_05005 NC_022525.1 1075272 1075874 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1075272..1075874 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612811.1 CDS IA1_05010 NC_022525.1 1075874 1076080 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1075874..1076080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612812.1 CDS IA1_05015 NC_022525.1 1076083 1076694 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1076083..1076694 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612813.1 CDS IA1_05020 NC_022525.1 1076827 1077624 D Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone 1076827..1077624 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612814.1 CDS IA1_05025 NC_022525.1 1078284 1078733 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1078284..1078733) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612815.1 CDS IA1_05035 NC_022525.1 1080050 1080385 D Derived by automated computational analysis using gene prediction method: Protein Homology.; holin 1080050..1080385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612816.1 CDS IA1_05040 NC_022525.1 1080372 1080821 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme 1080372..1080821 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612817.1 CDS IA1_05045 NC_022525.1 1080818 1081288 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase 1080818..1081288 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612818.1 CDS IA1_05050 NC_022525.1 1081617 1082120 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1081617..1082120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612819.1 CDS IA1_05055 NC_022525.1 1082377 1082778 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Inhibitor of g-type lysozyme complement(1082377..1082778) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612820.1 CDS IA1_05060 NC_022525.1 1083064 1083609 D Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase 1083064..1083609 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612821.1 CDS IA1_05065 NC_022525.1 1083581 1085512 D Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase 1083581..1085512 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612822.1 CDS IA1_05070 NC_022525.1 1085496 1085699 D Derived by automated computational analysis using gene prediction method: Protein Homology.; head-tail joining protein 1085496..1085699 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612823.1 CDS IA1_05075 NC_022525.1 1085696 1087276 D Derived by automated computational analysis using gene prediction method: Protein Homology.; plasmid partitioning protein ParB 1085696..1087276 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612824.1 CDS IA1_05080 NC_022525.1 1087266 1088762 D Derived by automated computational analysis using gene prediction method: Protein Homology.; scaffold protein 1087266..1088762 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612825.1 CDS IA1_05085 NC_022525.1 1088775 1089122 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Head decoration protein 1088775..1089122 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612826.1 CDS IA1_05090 NC_022525.1 1089177 1090205 D Derived by automated computational analysis using gene prediction method: Protein Homology.; head protein 1089177..1090205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612827.1 CDS IA1_05095 NC_022525.1 1090263 1090628 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA packaging protein 1090263..1090628 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612828.1 CDS IA1_05100 NC_022525.1 1090639 1091016 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail attachment protein 1090639..1091016 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612829.1 CDS IA1_05105 NC_022525.1 1091003 1091581 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1091003..1091581 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612830.1 CDS IA1_05110 NC_022525.1 1091578 1091979 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1091578..1091979 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612831.1 CDS IA1_05115 NC_022525.1 1091990 1092733 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1091990..1092733 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612832.1 CDS IA1_05120 NC_022525.1 1092784 1093179 D Derived by automated computational analysis using gene prediction method: Protein Homology.; minor tail protein 1092784..1093179 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612833.1 CDS IA1_05125 NC_022525.1 1093197 1093514 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1093197..1093514 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612834.1 CDS IA1_05130 NC_022525.1 1093486 1096581 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1093486..1096581 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612835.1 CDS IA1_05135 NC_022525.1 1096584 1096913 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1096584..1096913 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612836.1 CDS IA1_05140 NC_022525.1 1096923 1097621 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1096923..1097621 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612837.1 CDS IA1_05145 NC_022525.1 1097730 1098365 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail protein 1097730..1098365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612838.1 CDS IA1_05150 NC_022525.1 1098263 1098910 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1098263..1098910 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612839.1 CDS IA1_05155 NC_022525.1 1098972 1102334 D Derived by automated computational analysis using gene prediction method: Protein Homology.; host specificity protein J 1098972..1102334 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612840.1 CDS IA1_05160 NC_022525.1 1102373 1102615 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1102373..1102615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612841.1 CDS IA1_05170 NC_022525.1 1103956 1105164 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1103956..1105164 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612842.1 CDS IA1_05175 NC_022525.1 1105164 1105745 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail assembly protein 1105164..1105745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612843.1 CDS IA1_05180 NC_022525.1 1106172 1106324 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1106172..1106324) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612844.1 CDS IA1_05185 NC_022525.1 1106575 1107468 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1106575..1107468) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612845.1 CDS IA1_05190 NC_022525.1 1107477 1107620 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1107477..1107620 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612846.1 CDS IA1_05195 NC_022525.1 1108633 1109259 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1108633..1109259) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612847.1 CDS IA1_05200 NC_022525.1 1109909 1110115 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MsgA complement(1109909..1110115) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612848.1 CDS pepN NC_022525.1 1110542 1113154 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase N 1110542..1113154 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612849.1 CDS IA1_05210 NC_022525.1 1113362 1114372 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroorotate dehydrogenase 1113362..1114372 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612850.1 CDS IA1_05215 NC_022525.1 1114538 1115080 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein ZapC 1114538..1115080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612851.1 CDS IA1_05220 NC_022525.1 1115077 1116186 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin complement(1115077..1116186) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612852.1 CDS rlmL NC_022525.1 1116285 1118393 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 1116285..1118393 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612853.1 CDS IA1_05230 NC_022525.1 1118406 1120313 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter ATPase 1118406..1120313 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612854.1 CDS IA1_05235 NC_022525.1 1120328 1121581 D Derived by automated computational analysis using gene prediction method: Protein Homology.; paraquat-inducible protein A 1120328..1121581 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612855.1 CDS IA1_05240 NC_022525.1 1121586 1123226 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; paraquat-inducible protein B 1121586..1123226 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612856.1 CDS IA1_05245 NC_022525.1 1123223 1123786 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1123223..1123786 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612857.1 CDS IA1_05250 NC_022525.1 1124309 1124827 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxydecanoyl-ACP dehydratase complement(1124309..1124827) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612858.1 CDS IA1_05255 NC_022525.1 1124896 1126656 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Lon protease complement(1124896..1126656) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612859.1 CDS IA1_05260 NC_022525.1 1126842 1127294 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Ter macrodomain organizer matS-binding protein 1126842..1127294 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612860.1 CDS IA1_05265 NC_022525.1 1127366 1128475 R OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1127366..1128475) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612861.1 CDS IA1_05270 NC_022525.1 1128776 1129285 R Derived by automated computational analysis using gene prediction method: Protein Homology.; SOS cell division inhibitor complement(1128776..1129285) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612862.1 CDS IA1_05275 NC_022525.1 1129502 1130107 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Crp/Fnr family transcriptional regulator 1129502..1130107 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612863.1 CDS IA1_05280 NC_022525.1 1130094 1132247 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1130094..1132247) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612864.1 CDS IA1_05285 NC_022525.1 1132266 1132712 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1132266..1132712) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612865.1 CDS helD NC_022525.1 1132836 1134890 D catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA helicase IV 1132836..1134890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612866.1 CDS mgsA NC_022525.1 1134926 1135384 R catalyzes the formation of methylglyoxal from glycerone phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; methylglyoxal synthase complement(1134926..1135384) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612867.1 CDS IA1_05300 NC_022525.1 1135479 1136141 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1135479..1136141) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612868.1 CDS IA1_05305 NC_022525.1 1136312 1136728 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1136312..1136728 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612869.1 CDS IA1_05310 NC_022525.1 1136773 1137090 R Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein HspQ complement(1136773..1137090) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612870.1 CDS IA1_05315 NC_022525.1 1137148 1138359 R SAM-dependent;catalyzes the methylation of cytosine at position 1962 of the 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(1137148..1138359) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612871.1 CDS IA1_05320 NC_022525.1 1138574 1139122 D DLP12 prophage; similar to PEBP/RK1P protein family in eukaryotes that inhibits MEK phosphorylation by Raf-1; crystal structure suggests similar properties but exact function is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.; kinase inhibitor 1138574..1139122 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612872.1 CDS IA1_05325 NC_022525.1 1139148 1139927 D Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 1139148..1139927 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612873.1 CDS IA1_05330 NC_022525.1 1139976 1140257 D catalyzes the hydrolysis of acylphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; acylphosphatase 1139976..1140257 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612874.1 CDS IA1_05335 NC_022525.1 1140254 1140583 R transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur transfer protein TusE complement(1140254..1140583) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612875.1 CDS IA1_05340 NC_022525.1 1140670 1141329 R binds to the HflBKC complex which modulates FtsH activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; HflBKC-binding inner membrane protein complement(1140670..1141329) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612876.1 CDS IA1_05345 NC_022525.1 1141395 1141544 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1141395..1141544 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612877.1 CDS IA1_05360 NC_022525.1 1142849 1143724 R Derived by automated computational analysis using gene prediction method: Protein Homology.; effector protein PipB complement(1142849..1143724) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612878.1 CDS IA1_05365 NC_022525.1 1144272 1144613 R SigE; IpgE; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion chaperone protein SigE complement(1144272..1144613) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612879.1 CDS sopB NC_022525.1 1144630 1146315 R pathogenicity island 1 protein; catalyzes the formation of phosphatidylinositol-3 phosphate from phosphatidylinositol-3,4,5-triphosphate; involved in the formation and maintenance of Salmonella-containing vacuole in the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; inositol phosphate phosphatase SopB complement(1144630..1146315) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612880.1 CDS IA1_05375 NC_022525.1 1146647 1146817 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1146647..1146817 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612881.1 CDS IA1_05380 NC_022525.1 1146818 1146928 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1146818..1146928) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612882.1 CDS IA1_05385 NC_022525.1 1147037 1148506 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; peptidase complement(1147037..1148506) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612883.1 CDS IA1_05390 NC_022525.1 1148679 1150043 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase complement(1148679..1150043) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612884.1 CDS IA1_05395 NC_022525.1 1150036 1150716 R response regulator in two-component regulatory system with BasS; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1150036..1150716) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612885.1 CDS IA1_05400 NC_022525.1 1150852 1151262 D catalyzes the formation of 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline from 5-hydroxyisourate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyisourate hydrolase 1150852..1151262 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612886.1 CDS hpaC NC_022525.1 1151595 1152107 R catalyzes the reduction of MN, FAD and riboflavin by NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxyphenylacetate 3-monooxygenase complement(1151595..1152107) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612887.1 CDS IA1_05410 NC_022525.1 1152125 1153687 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Pyoverdin chromophore biosynthetic protein pvcC complement(1152125..1153687) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612888.1 CDS IA1_05415 NC_022525.1 1153905 1154345 R Derived by automated computational analysis using gene prediction method: Protein Homology.; homoprotocatechuate degradative operon repressor complement(1153905..1154345) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612889.1 CDS IA1_05420 NC_022525.1 1154620 1155909 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase 1154620..1155909 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612890.1 CDS IA1_05425 NC_022525.1 1155906 1157372 D catalyzes the formation of betaine from betaine aldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; betaine-aldehyde dehydrogenase 1155906..1157372 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612891.1 CDS IA1_05430 NC_022525.1 1157374 1158225 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1157374..1158225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612892.1 CDS IA1_05435 NC_022525.1 1158235 1158615 D catalyzes the formation of 5-oxo-pent-3-ene-1,2,5-tricarboxylic acid from 5-carboxymethyl-2-hydroxy-muconic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-carboxymethyl-2-hydroxymuconate isomerase 1158235..1158615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612893.1 CDS IA1_05440 NC_022525.1 1158760 1159563 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxo-hept-3-ene-1,7-dioate hydratase 1158760..1159563 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612894.1 CDS IA1_05445 NC_022525.1 1159574 1160365 D catalyzes the retro-aldol cleavage of 2-keto-3-deoxy-L-rhamnonate to pyruvate and lactaldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxy-L-rhamnonate aldolase 1159574..1160365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612895.1 CDS IA1_05450 NC_022525.1 1160437 1161813 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxyphenylacetate permease 1160437..1161813 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612896.1 CDS IA1_05455 NC_022525.1 1161823 1162719 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxyphenylacetate catabolism protein 1161823..1162719 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612897.1 CDS IA1_05460 NC_022525.1 1162733 1163671 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1162733..1163671 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612898.1 CDS IA1_05465 NC_022525.1 1165094 1165399 R with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone-modulator protein CbpM complement(1165094..1165399) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612899.1 CDS IA1_05470 NC_022525.1 1165399 1166319 R functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein complement(1165399..1166319) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612900.1 CDS IA1_05475 NC_022525.1 1166555 1166917 D Derived by automated computational analysis using gene prediction method: Protein Homology.; copper-resistance protein 1166555..1166917 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612901.1 CDS IA1_05480 NC_022525.1 1166966 1168852 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-disulfide reductase 1166966..1168852 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612902.1 CDS IA1_05485 NC_022525.1 1168849 1169472 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DSBA oxidoreductase 1168849..1169472 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612903.1 CDS IA1_05490 NC_022525.1 1169462 1169968 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alkyl hydroperoxide reductase 1169462..1169968 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612904.1 CDS IA1_05495 NC_022525.1 1170101 1171342 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-1-phosphatase/inositol phosphatase 1170101..1171342 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612905.1 CDS IA1_05500 NC_022525.1 1171376 1171603 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1171376..1171603) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612906.1 CDS IA1_05505 NC_022525.1 1171624 1172220 R catalyzes the transfer of electrons from NADH to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H:quinone oxidoreductase complement(1171624..1172220) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612907.1 CDS IA1_05510 NC_022525.1 1172605 1172772 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1172605..1172772 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612908.1 CDS IA1_05515 NC_022525.1 1172909 1173547 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1172909..1173547 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612909.1 CDS IA1_05520 NC_022525.1 1173544 1173939 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1173544..1173939) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612910.1 CDS putA NC_022525.1 1173998 1177960 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(1173998..1177960) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612911.1 CDS IA1_05530 NC_022525.1 1178382 1179890 D involved in the sodium dependent uptake of proline; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; proline:sodium symporter 1178382..1179890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612912.1 CDS IA1_05535 NC_022525.1 1180508 1180804 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; protein phoH 1180508..1180804 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612913.1 CDS IA1_05540 NC_022525.1 1180897 1181571 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate hydrolase 1180897..1181571 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612914.1 CDS IA1_05545 NC_022525.1 1181677 1182558 R Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmannosamine kinase complement(1181677..1182558) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612915.1 CDS IA1_05550 NC_022525.1 1182844 1184340 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetylneuraminate ABC transporter complement(1182844..1184340) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612916.1 CDS IA1_05555 NC_022525.1 1184682 1185362 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmannosamine-6-phosphate 2-epimerase complement(1184682..1185362) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612917.1 CDS IA1_05560 NC_022525.1 1185868 1187028 D Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylneuraminic acid mutarotase 1185868..1187028 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612918.1 CDS IA1_05565 NC_022525.1 1187074 1187766 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1187074..1187766 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612919.1 CDS IA1_05570 NC_022525.1 1188049 1189329 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sialic acid transporter 1188049..1189329 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612920.1 CDS IA1_05575 NC_022525.1 1189343 1190446 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; oxidoreductase 1189343..1190446 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612921.1 CDS IA1_05585 NC_022525.1 1190940 1191104 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1190940..1191104) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612922.1 CDS ghrA NC_022525.1 1191103 1192041 D catalyzes the formation of glycolate and glycerate from glyoxylate and hydroxypyruvate, respectively; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glyoxylate/hydroxypyruvate reductase A 1191103..1192041 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612923.1 CDS IA1_05595 NC_022525.1 1192126 1192863 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 1192126..1192863 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612924.1 CDS IA1_05600 NC_022525.1 1192887 1193441 D Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone 1192887..1193441 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612925.1 CDS IA1_05605 NC_022525.1 1193494 1194024 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1193494..1194024 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612926.1 CDS IA1_05610 NC_022525.1 1194063 1194896 R involved in the stability of the curlin proteins during assembly; involved in the secretion of the major curlin subunit CsgA across the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(1194063..1194896) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612927.1 CDS IA1_05615 NC_022525.1 1194923 1195339 R nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; curli assembly protein CsgF complement(1194923..1195339) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612928.1 CDS IA1_05620 NC_022525.1 1195366 1195761 R chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; curli assembly protein CsgE complement(1195366..1195761) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612929.1 CDS IA1_05625 NC_022525.1 1195766 1196416 R activates the csgBA and csgDEFG operons involved in biofilm formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1195766..1196416) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612930.1 CDS csgB NC_022525.1 1197171 1197626 D CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; Derived by automated computational analysis using gene prediction method: Protein Homology.; curlin 1197171..1197626 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612931.1 CDS csgA NC_022525.1 1197668 1198123 D the major structural subunit of curlin which assemble to form curli which can bind to fibronectin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; major curlin subunit 1197668..1198123 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612932.1 CDS IA1_05640 NC_022525.1 1198185 1198511 D Derived by automated computational analysis using gene prediction method: Protein Homology.; curli production assembly protein CsgC 1198185..1198511 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612933.1 CDS IA1_05645 NC_022525.1 1198642 1198962 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1198642..1198962 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612934.1 CDS IA1_05650 NC_022525.1 1199052 1199591 D interacts and inactivates RNase III during cold shock; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RNase III inhibitor 1199052..1199591 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612935.1 CDS IA1_05655 NC_022525.1 1199527 1201014 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1199527..1201014 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612936.1 CDS opgC NC_022525.1 1201031 1202185 R required for the transfer of succinyl residues to osmoregulated periplasmic glucans; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucan biosynthesis protein complement(1201031..1202185) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612937.1 CDS mdoG NC_022525.1 1202439 1203992 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucan biosynthesis protein D 1202439..1203992 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612938.1 CDS IA1_05670 NC_022525.1 1203985 1206528 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosyltransferase 1203985..1206528 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612939.1 CDS IA1_05675 NC_022525.1 1206602 1206829 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 1206602..1206829 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612940.1 CDS IA1_05680 NC_022525.1 1206830 1207204 R Derived by automated computational analysis using gene prediction method: Protein Homology.; SecY/SecA suppressor protein complement(1206830..1207204) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612941.1 CDS IA1_05685 NC_022525.1 1207286 1208500 R Confers resistance to fosfomycin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(1207286..1208500) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612942.1 CDS IA1_05690 NC_022525.1 1208655 1209575 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid A biosynthesis lauroyl acyltransferase complement(1208655..1209575) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612943.1 CDS IA1_05695 NC_022525.1 1209795 1210847 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfurtransferase 1209795..1210847 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612944.1 CDS IA1_05700 NC_022525.1 1210899 1211474 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1210899..1211474) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612945.1 CDS IA1_05705 NC_022525.1 1211471 1212043 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome B561 complement(1211471..1212043) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612946.1 CDS IA1_05710 NC_022525.1 1212306 1212419 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1212306..1212419) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612947.1 CDS solA NC_022525.1 1212460 1213578 R catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-methyltryptophan oxidase complement(1212460..1213578) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612948.1 CDS bssS NC_022525.1 1213691 1213945 R BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm formation regulatory protein BssS complement(1213691..1213945) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612949.1 CDS IA1_05725 NC_022525.1 1214235 1214480 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA damage-inducible protein I complement(1214235..1214480) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612950.1 CDS IA1_05730 NC_022525.1 1214554 1215600 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroorotase complement(1214554..1215600) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612951.1 CDS IA1_05735 NC_022525.1 1215704 1216264 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(1215704..1216264) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612952.1 CDS IA1_05740 NC_022525.1 1216389 1217036 R cofactor involved in the reduction of disulfides; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin complement(1216389..1217036) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612953.1 CDS IA1_05745 NC_022525.1 1217100 1218308 R Confers resistance to norfloxacin and enoxacin; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein MdtH complement(1217100..1218308) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612954.1 CDS IA1_05750 NC_022525.1 1218545 1219129 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine acetyltransferase 1218545..1219129 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612955.1 CDS IA1_05755 NC_022525.1 1219165 1219812 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1219165..1219812 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612956.1 CDS IA1_05760 NC_022525.1 1219814 1220737 D Derived by automated computational analysis using gene prediction method: Protein Homology.; virulence factor MviM 1219814..1220737 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612957.1 CDS IA1_05765 NC_022525.1 1221002 1222576 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1221002..1222576 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612958.1 CDS IA1_05770 NC_022525.1 1222658 1223080 R export chaperone for FlgK and FlgL; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagella synthesis chaperone protein FlgN complement(1222658..1223080) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612959.1 CDS IA1_05775 NC_022525.1 1223085 1223378 R regulates the flagellar specific sigma28 transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-sigma28 factor FlgM complement(1223085..1223378) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612960.1 CDS flgA NC_022525.1 1223470 1224129 R required for the assembly of the flagellar basal body P-ring; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body P-ring biosynthesis protein FlgA complement(1223470..1224129) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612961.1 CDS IA1_05785 NC_022525.1 1224286 1224702 D Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FlgB 1224286..1224702 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612962.1 CDS flgC NC_022525.1 1224706 1225110 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgC 1224706..1225110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612963.1 CDS flgD NC_022525.1 1225122 1225820 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod modification protein 1225122..1225820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612964.1 CDS flgE NC_022525.1 1225847 1227058 D the hook connects flagellar basal body to the flagellar filament; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook protein FlgE 1225847..1227058 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612965.1 CDS flgF NC_022525.1 1227079 1227834 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgF 1227079..1227834 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612966.1 CDS flgG NC_022525.1 1227848 1228630 D makes up the distal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgG 1227848..1228630 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612967.1 CDS flgH NC_022525.1 1228684 1229382 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body L-ring protein 1228684..1229382 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612968.1 CDS flgI NC_022525.1 1229394 1230491 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body P-ring protein 1229394..1230491 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612969.1 CDS flgJ NC_022525.1 1230491 1231441 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar rod assembly protein FlgJ 1230491..1231441 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612970.1 CDS flgK NC_022525.1 1231506 1233167 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-associated protein FlgK 1231506..1233167 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612971.1 CDS flgL NC_022525.1 1233182 1234135 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-associated protein FlgL 1233182..1234135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612972.1 CDS rne NC_022525.1 1234392 1237595 R bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease E complement(1234392..1237595) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612973.1 CDS IA1_05845 NC_022525.1 1238169 1239128 D catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridylate synthase C 1238169..1239128 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612974.1 CDS IA1_05850 NC_022525.1 1239266 1240027 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1239266..1240027 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612975.1 CDS IA1_05855 NC_022525.1 1240233 1240457 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1240233..1240457 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612976.1 CDS IA1_05860 NC_022525.1 1240529 1241113 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; Maf complement(1240529..1241113) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612977.1 CDS IA1_05865 NC_022525.1 1241311 1241832 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1241311..1241832 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612978.1 CDS rpmF NC_022525.1 1241884 1242057 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 50S ribosomal protein L32 1241884..1242057 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612979.1 CDS IA1_05875 NC_022525.1 1242221 1243270 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphate acyltransferase 1242221..1243270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612980.1 CDS IA1_05880 NC_022525.1 1243351 1244304 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacyl-ACP synthase 1243351..1244304 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612981.1 CDS IA1_05885 NC_022525.1 1244320 1245249 D Derived by automated computational analysis using gene prediction method: Protein Homology.; malonyl CoA-ACP transacylase 1244320..1245249 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612982.1 CDS fabG NC_022525.1 1245262 1245996 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-ketoacyl-ACP reductase 1245262..1245996 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612983.1 CDS acpP NC_022525.1 1246152 1246388 D carries the fatty acid chain in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl carrier protein 1246152..1246388 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612984.1 CDS IA1_05900 NC_022525.1 1246474 1247715 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacyl-ACP synthase 1246474..1247715 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612985.1 CDS IA1_05905 NC_022525.1 1247839 1248648 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-amino-4-deoxychorismate lyase 1247839..1248648 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612986.1 CDS IA1_05910 NC_022525.1 1248651 1249673 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aminodeoxychorismate lyase 1248651..1249673 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612987.1 CDS IA1_05915 NC_022525.1 1249663 1250304 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidylate kinase 1249663..1250304 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612988.1 CDS IA1_05920 NC_022525.1 1250301 1251305 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit delta' 1250301..1251305 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612989.1 CDS IA1_05925 NC_022525.1 1251316 1252113 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNAse 1251316..1252113 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612990.1 CDS IA1_05930 NC_022525.1 1252408 1253841 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS glucose transporter subunit IIBC 1252408..1253841 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612991.1 CDS IA1_05935 NC_022525.1 1253926 1256100 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ferric-rhodotorulic acid outer membrane transporter complement(1253926..1256100) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612992.1 CDS IA1_05940 NC_022525.1 1256423 1256800 D Derived by automated computational analysis using gene prediction method: Protein Homology.; purine nucleoside phosphoramidase 1256423..1256800 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612993.1 CDS IA1_05945 NC_022525.1 1256803 1257177 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1256803..1257177 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612994.1 CDS IA1_05950 NC_022525.1 1257191 1257829 D Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein activator LpoB 1257191..1257829 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612995.1 CDS thiK NC_022525.1 1257810 1258634 D catalyzes the phosphorylation of thiamine to thiamine phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine kinase 1257810..1258634 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612996.1 CDS IA1_05960 NC_022525.1 1258645 1259670 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-hexosaminidase 1258645..1259670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612997.1 CDS IA1_05965 NC_022525.1 1259695 1260237 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1259695..1260237 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612998.1 CDS IA1_05970 NC_022525.1 1260492 1261796 D Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase 1260492..1261796 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008612999.1 CDS IA1_05975 NC_022525.1 1261975 1262514 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1261975..1262514 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613000.1 CDS IA1_05980 NC_022525.1 1262589 1263224 R Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator complement(1262589..1263224) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613001.1 CDS IA1_05985 NC_022525.1 1263466 1263723 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multiple stress resistance protein BhsA 1263466..1263723 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613002.1 CDS IA1_05990 NC_022525.1 1263820 1264785 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptigoglycan-binding protein LysM complement(1263820..1264785) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613003.1 CDS IA1_05995 NC_022525.1 1264933 1268379 R catalyzes branch migration in Holliday junction intermediates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase RecG complement(1264933..1268379) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613004.1 CDS IA1_06000 NC_022525.1 1268717 1269916 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1268717..1269916 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613005.1 CDS IA1_06005 NC_022525.1 1269909 1270610 D ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsE 1269909..1270610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613006.1 CDS IA1_06010 NC_022525.1 1270610 1271854 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1270610..1271854 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613007.1 CDS IA1_06015 NC_022525.1 1271883 1272794 D catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyl-D-glucosamine kinase 1271883..1272794 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613008.1 CDS IA1_06020 NC_022525.1 1272813 1273634 D Modulates the activities of several enzymes which are inactive in their acetylated form; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent deacetylase 1272813..1273634 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613009.1 CDS potD NC_022525.1 1273716 1274762 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter substrate-binding protein complement(1273716..1274762) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613010.1 CDS potC NC_022525.1 1274787 1275566 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease complement(1274787..1275566) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613011.1 CDS IA1_06035 NC_022525.1 1275669 1275791 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1275669..1275791) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613012.1 CDS sifA NC_022525.1 1275882 1276892 R translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isoprenoid addition of protein geranylgeranyl transferase I; also modified by S-acylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; effector protein SifA complement(1275882..1276892) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613013.1 CDS potB NC_022525.1 1277221 1278084 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease complement(1277221..1278084) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613014.1 CDS potA NC_022525.1 1278068 1279204 R functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter ATPase complement(1278068..1279204) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613015.1 CDS IA1_06055 NC_022525.1 1279455 1280684 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase T 1279455..1280684 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613016.1 CDS IA1_06060 NC_022525.1 1280688 1282022 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1280688..1282022 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613017.1 CDS IA1_06065 NC_022525.1 1282062 1283183 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1282062..1283183) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613018.1 CDS IA1_06070 NC_022525.1 1283264 1284727 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein PhoQ complement(1283264..1284727) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613019.1 CDS IA1_06075 NC_022525.1 1284727 1285401 R response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; PhoP family transcriptional regulator complement(1284727..1285401) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613020.1 CDS IA1_06080 NC_022525.1 1285525 1286895 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylosuccinate lyase complement(1285525..1286895) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613021.1 CDS IA1_06085 NC_022525.1 1286899 1287546 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysogenization regulator complement(1286899..1287546) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613022.1 CDS mnmA NC_022525.1 1287627 1288733 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiouridylase complement(1287627..1288733) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613023.1 CDS IA1_06095 NC_022525.1 1288787 1289248 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatase complement(1288787..1289248) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613024.1 CDS IA1_06100 NC_022525.1 1289260 1289589 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1289260..1289589) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613025.1 CDS IA1_06105 NC_022525.1 1289586 1290221 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1289586..1290221) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613026.1 CDS IA1_06110 NC_022525.1 1290423 1291673 D Converts isocitrate to alpha ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate dehydrogenase 1290423..1291673 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613027.1 CDS IA1_06115 NC_022525.1 1292121 1293245 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1292121..1293245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613028.1 CDS IA1_06120 NC_022525.1 1293702 1293908 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1293702..1293908) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613029.1 CDS IA1_06125 NC_022525.1 1294230 1295018 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1294230..1295018) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613030.1 CDS IA1_06130 NC_022525.1 1295508 1295747 R Derived by automated computational analysis using gene prediction method: Protein Homology.; virulence protein MsgA complement(1295508..1295747) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613031.1 CDS IA1_06135 NC_022525.1 1295938 1296213 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1295938..1296213) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613032.1 CDS IA1_06140 NC_022525.1 1296874 1297074 R Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA chaperone/anti-terminator complement(1296874..1297074) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613033.1 CDS IA1_06145 NC_022525.1 1298293 1298850 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1298293..1298850 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613034.1 CDS IA1_06155 NC_022525.1 1300072 1300416 R PliC; periplasmic lysozyme inhibitor of c-type lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme inhibitor complement(1300072..1300416) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613035.1 CDS IA1_06160 NC_022525.1 1300794 1300919 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1300794..1300919 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613036.1 CDS IA1_06165 NC_022525.1 1301051 1301224 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1301051..1301224) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613037.1 CDS IA1_06170 NC_022525.1 1301544 1302011 D Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shick protein 1301544..1302011 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613038.1 CDS IA1_06175 NC_022525.1 1302350 1303393 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1302350..1303393 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613039.1 CDS IA1_06180 NC_022525.1 1303476 1304006 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase complement(1303476..1304006) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613040.1 CDS IA1_06185 NC_022525.1 1304155 1304469 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lipoprotein complement(1304155..1304469) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613041.1 CDS IA1_06190 NC_022525.1 1305150 1306784 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel ABC transporter substrate-binding protein 1305150..1306784 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613042.1 CDS IA1_06195 NC_022525.1 1306784 1307758 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1306784..1307758 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613043.1 CDS IA1_06200 NC_022525.1 1307748 1308560 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1307748..1308560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613044.1 CDS IA1_06205 NC_022525.1 1308554 1309351 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein 1308554..1309351 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613045.1 CDS IA1_06210 NC_022525.1 1309345 1309935 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein 1309345..1309935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613046.1 CDS IA1_06215 NC_022525.1 1310017 1311150 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MscS mechanosensitive ion channel complement(1310017..1311150) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613047.1 CDS IA1_06220 NC_022525.1 1311344 1311670 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin 1311344..1311670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613048.1 CDS IA1_06230 NC_022525.1 1311864 1312514 D Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc/cadmium-binding protein 1311864..1312514 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613049.1 CDS IA1_06235 NC_022525.1 1312623 1313411 D streptomycin 3'-adenyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoglycoside resistance protein 1312623..1313411 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613050.1 CDS IA1_06240 NC_022525.1 1313502 1314149 D Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 1313502..1314149 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613051.1 CDS IA1_06245 NC_022525.1 1314218 1315066 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1314218..1315066 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613052.1 CDS IA1_06250 NC_022525.1 1315321 1315569 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1315321..1315569) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613053.1 CDS IA1_06255 NC_022525.1 1315898 1316443 D Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate mutase 1315898..1316443 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613054.1 CDS IA1_06260 NC_022525.1 1316640 1317278 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; leucine export protein LeuE 1316640..1317278 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613055.1 CDS IA1_06265 NC_022525.1 1317451 1317813 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tellurite resistance protein B 1317451..1317813 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613056.1 CDS IA1_06270 NC_022525.1 1317816 1317998 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1317816..1317998 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613057.1 CDS IA1_06275 NC_022525.1 1318228 1318869 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nitric oxide reductase 1318228..1318869 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613058.1 CDS IA1_06280 NC_022525.1 1319183 1319431 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1319183..1319431 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613059.1 CDS IA1_06285 NC_022525.1 1319864 1320115 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1319864..1320115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613060.1 CDS IA1_06290 NC_022525.1 1320184 1320495 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1320184..1320495 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613061.1 CDS IA1_06295 NC_022525.1 1320481 1320828 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1320481..1320828) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613062.1 CDS IA1_06300 NC_022525.1 1320947 1322131 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(1320947..1322131) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613063.1 CDS IA1_06305 NC_022525.1 1322232 1323026 D Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 1322232..1323026 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613064.1 CDS IA1_06310 NC_022525.1 1323006 1323452 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1323006..1323452) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613065.1 CDS IA1_06315 NC_022525.1 1323658 1323765 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1323658..1323765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613066.1 CDS IA1_06320 NC_022525.1 1323762 1324289 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1323762..1324289) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613067.1 CDS IA1_06325 NC_022525.1 1324330 1325823 R Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cylase complement(1324330..1325823) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613068.1 CDS IA1_06330 NC_022525.1 1326464 1327750 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1326464..1327750) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613069.1 CDS IA1_06335 NC_022525.1 1327873 1329837 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1327873..1329837) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613070.1 CDS IA1_06340 NC_022525.1 1330235 1330981 D scaffolding protein for the murein polymerase MrcB and the lytic transglycosylase MltA; Derived by automated computational analysis using gene prediction method: Protein Homology.; MltA-interacting protein MipA 1330235..1330981 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613071.1 CDS IA1_06345 NC_022525.1 1331271 1332467 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Chondro-6-sulfatase 1331271..1332467 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613072.1 CDS IA1_06350 NC_022525.1 1332564 1333421 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1332564..1333421 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613073.1 CDS IA1_06355 NC_022525.1 1333520 1334404 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-6-phosphate 1-epimerase complement(1333520..1334404) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613074.1 CDS IA1_06360 NC_022525.1 1334404 1334580 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1334404..1334580) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613075.1 CDS IA1_06365 NC_022525.1 1334739 1335734 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glyceraldehyde-3-phosphate dehydrogenase complement(1334739..1335734) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613076.1 CDS IA1_06370 NC_022525.1 1336076 1336489 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; methionine sulfoxide reductase B 1336076..1336489 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613077.1 CDS IA1_06375 NC_022525.1 1336531 1336809 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1336531..1336809 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613078.1 CDS IA1_06380 NC_022525.1 1337161 1337817 R catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinamidase/pyrazinamidase complement(1337161..1337817) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613079.1 CDS ansA NC_022525.1 1337844 1338860 R converts asparagine to aspartate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoplasmic asparaginase I complement(1337844..1338860) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613080.1 CDS IA1_06390 NC_022525.1 1338956 1340812 R SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; protease complement(1338956..1340812) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613081.1 CDS IA1_06395 NC_022525.1 1340986 1341537 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 1340986..1341537 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613082.1 CDS IA1_06400 NC_022525.1 1341655 1342698 D catalyzes the formation of selenophosphate from selenide and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; selenophosphate synthetase 1341655..1342698 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613083.1 CDS IA1_06405 NC_022525.1 1342703 1344652 D decatenates replicating daughter chromosomes; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase III 1342703..1344652 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613084.1 CDS IA1_06410 NC_022525.1 1344682 1346025 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate dehydrogenase complement(1344682..1346025) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613085.1 CDS IA1_06415 NC_022525.1 1346264 1346539 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1346264..1346539 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613086.1 CDS IA1_06420 NC_022525.1 1346499 1346915 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase complement(1346499..1346915) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613087.1 CDS IA1_06425 NC_022525.1 1346988 1347794 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease III complement(1346988..1347794) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613088.1 CDS IA1_06430 NC_022525.1 1348240 1349466 D catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetylornithine aminotransferase 1348240..1349466 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613089.1 CDS IA1_06435 NC_022525.1 1349457 1350491 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine succinyltransferase 1349457..1350491 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613090.1 CDS astD NC_022525.1 1350488 1351966 D a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinylglutamate-semialdehyde dehydrogenase 1350488..1351966 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613091.1 CDS IA1_06445 NC_022525.1 1351963 1353306 D catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; succinylarginine dihydrolase 1351963..1353306 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613092.1 CDS IA1_06450 NC_022525.1 1353299 1354267 D catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinylglutamate desuccinylase 1353299..1354267 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613093.1 CDS IA1_06455 NC_022525.1 1354603 1355088 D periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1354603..1355088 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613094.1 CDS IA1_06460 NC_022525.1 1355163 1356071 R 3' incision activity; acts with UvrC; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotide excision repair endonuclease complement(1355163..1356071) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613095.1 CDS nadE NC_022525.1 1356165 1356992 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD synthetase complement(1356165..1356992) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613096.1 CDS IA1_06470 NC_022525.1 1357210 1357551 D osmotically-inducible lipoprotein E; activator of ntr-like gene protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1357210..1357551 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613097.1 CDS IA1_06475 NC_022525.1 1357852 1358172 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N'-diacetylchitobiose transporter subunit IIB 1357852..1358172 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613098.1 CDS IA1_06480 NC_022525.1 1358255 1359613 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N'-diacetylchitobiose transporter subunit IIC 1358255..1359613 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613099.1 CDS IA1_06485 NC_022525.1 1359664 1360011 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N'-diacetylchitobiose transporter subunit IIA 1359664..1360011 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613100.1 CDS IA1_06490 NC_022525.1 1360022 1360864 D represses the celABCDF-ydjC operon involved in carbon uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1360022..1360864 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613101.1 CDS IA1_06495 NC_022525.1 1360989 1362344 D catalyzes the fromation of N-acetyl-D-glucosamine and N-acetyl-D-glucosamine-6-phosphate from diacetylchitobiose-6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; diacetylchitobiose-6-phosphate hydrolase 1360989..1362344 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613102.1 CDS IA1_06500 NC_022525.1 1362357 1363115 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1362357..1363115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613103.1 CDS katE NC_022525.1 1363159 1365411 R Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroperoxidase II complement(1363159..1365411) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613104.1 CDS IA1_06510 NC_022525.1 1365628 1365870 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division modulator 1365628..1365870 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613105.1 CDS IA1_06515 NC_022525.1 1365972 1367363 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-cystine transporter tcyP complement(1365972..1367363) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613106.1 CDS IA1_06520 NC_022525.1 1367500 1368099 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1367500..1368099) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613107.1 CDS IA1_06525 NC_022525.1 1368237 1368905 R YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-deoxyglucose-6-phosphatase complement(1368237..1368905) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613108.1 CDS IA1_06530 NC_022525.1 1369054 1369590 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1369054..1369590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613109.1 CDS IA1_06535 NC_022525.1 1369633 1370493 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1369633..1370493) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613110.1 CDS IA1_06540 NC_022525.1 1370600 1370890 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1370600..1370890) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613111.1 CDS IA1_06545 NC_022525.1 1370987 1371919 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphofructokinase complement(1370987..1371919) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613112.1 CDS IA1_06550 NC_022525.1 1372208 1372966 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1372208..1372966 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613113.1 CDS IA1_06555 NC_022525.1 1373015 1373974 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1373015..1373974) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613114.1 CDS IA1_06560 NC_022525.1 1374117 1374431 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1374117..1374431 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613115.1 CDS IA1_06565 NC_022525.1 1374428 1375282 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; endonuclease 1374428..1375282 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613116.1 CDS thrS NC_022525.1 1375542 1377470 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); Derived by automated computational analysis using gene prediction method: Protein Homology.; threonyl-tRNA synthetase 1375542..1377470 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613117.1 CDS IA1_06575 NC_022525.1 1377582 1378016 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; translation initiation factor IF-3 1377582..1378016 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613118.1 CDS IA1_06580 NC_022525.1 1378112 1378309 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L35 1378112..1378309 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613119.1 CDS rplT NC_022525.1 1378360 1378716 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L20 1378360..1378716 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613120.1 CDS IA1_06590 NC_022525.1 1379018 1380001 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylalanyl-tRNA synthetase 1379018..1380001 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613121.1 CDS pheT NC_022525.1 1380017 1382404 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylalanyl-tRNA synthetase 1380017..1382404 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613122.1 CDS ihfA NC_022525.1 1382409 1382708 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; Derived by automated computational analysis using gene prediction method: Protein Homology.; integration host factor subunit alpha 1382409..1382708 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613123.1 CDS IA1_06605 NC_022525.1 1382911 1383891 D with BtuD and BtuF transports vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; vtamin B12-transporter permease 1382911..1383891 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613124.1 CDS btuE NC_022525.1 1383983 1384534 D similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione peroxidase 1383983..1384534 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613125.1 CDS IA1_06615 NC_022525.1 1384534 1385283 D ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; vitamin B12-transporter ATPase 1384534..1385283 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613126.1 CDS IA1_06620 NC_022525.1 1385360 1385824 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase 1385360..1385824 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613127.1 CDS IA1_06625 NC_022525.1 1386138 1386848 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP regulator CdgR 1386138..1386848 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613128.1 CDS IA1_06630 NC_022525.1 1386910 1388352 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1386910..1388352 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613129.1 CDS IA1_06635 NC_022525.1 1388388 1388579 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1388388..1388579) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613130.1 CDS IA1_06640 NC_022525.1 1388736 1389782 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1388736..1389782) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613131.1 CDS IA1_06645 NC_022525.1 1389938 1390771 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PEP synthetase regulatory protein complement(1389938..1390771) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613132.1 CDS IA1_06650 NC_022525.1 1390948 1391061 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1390948..1391061) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613133.1 CDS IA1_06655 NC_022525.1 1391108 1393486 D catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate synthase 1391108..1393486 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613134.1 CDS IA1_06660 NC_022525.1 1393528 1395168 R acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; short chain acyl-CoA synthetase complement(1393528..1395168) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613135.1 CDS IA1_06665 NC_022525.1 1395406 1395699 R necessary for anaerobic carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin FixX complement(1395406..1395699) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613136.1 CDS IA1_06670 NC_022525.1 1395696 1396982 R FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase FixC complement(1395696..1396982) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613137.1 CDS fixB NC_022525.1 1397039 1397974 R involved in electron transfer during carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein subunit alpha complement(1397039..1397974) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613138.1 CDS IA1_06680 NC_022525.1 1397996 1398760 R required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein FixB complement(1397996..1398760) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613139.1 CDS IA1_06685 NC_022525.1 1399223 1400113 D Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 1399223..1400113 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613140.1 CDS IA1_06690 NC_022525.1 1400189 1401340 R catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; crotonobetainyl-CoA dehydrogenase complement(1400189..1401340) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613141.1 CDS IA1_06695 NC_022525.1 1401354 1402949 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1401354..1402949) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613142.1 CDS IA1_06700 NC_022525.1 1403103 1403861 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-dehydroquinate dehydratase complement(1403103..1403861) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613143.1 CDS IA1_06705 NC_022525.1 1403906 1404772 R YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate 5-dehydrogenase complement(1403906..1404772) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613144.1 CDS IA1_06710 NC_022525.1 1404839 1406074 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transporter complement(1404839..1406074) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613145.1 CDS IA1_06715 NC_022525.1 1406438 1407649 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(1406438..1407649) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613146.1 CDS IA1_06720 NC_022525.1 1407790 1408149 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1407790..1408149) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613147.1 CDS IA1_06725 NC_022525.1 1408606 1409724 R YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1408606..1409724) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613148.1 CDS IA1_06730 NC_022525.1 1409989 1413045 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1409989..1413045 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613149.1 CDS IA1_06735 NC_022525.1 1413042 1413452 D required for efficient enterobactin production; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase 1413042..1413452 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613150.1 CDS IA1_06740 NC_022525.1 1413551 1413739 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1413551..1413739 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613151.1 CDS IA1_06745 NC_022525.1 1414026 1415372 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:dicarboxylate symporter complement(1414026..1415372) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613152.1 CDS sufA NC_022525.1 1415799 1416167 D functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster assembly scaffold protein 1415799..1416167 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613153.1 CDS IA1_06755 NC_022525.1 1416176 1417663 D with SufCD activates cysteine desulfurase SufS; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase activator complex subunit SufB 1416176..1417663 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613154.1 CDS sufC NC_022525.1 1417680 1418426 D part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase 1417680..1418426 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613155.1 CDS IA1_06765 NC_022525.1 1418401 1419672 D with SufBC activates cysteine desulfurase SufS; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase activator complex subunit SufD 1418401..1419672 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613156.1 CDS IA1_06770 NC_022525.1 1419669 1420889 D Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional cysteine desulfurase/selenocysteine lyase 1419669..1420889 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613157.1 CDS IA1_06775 NC_022525.1 1420902 1421318 D Acts with SufS to catalyze the formation of L-alanine from L-cysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desufuration protein SufE 1420902..1421318 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613158.1 CDS IA1_06780 NC_022525.1 1421473 1422474 D catalyzes the formation of a meso-diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link in peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein L,D-transpeptidase 1421473..1422474 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613159.1 CDS IA1_06785 NC_022525.1 1422540 1422842 R major outer membrane lipoprotein; interacts with peptidoglycan to maintain the integrity of the cell envelope; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein lipoprotein complement(1422540..1422842) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613160.1 CDS IA1_06790 NC_022525.1 1422862 1423098 R major outer membrane lipoprotein; interacts with peptidoglycan to maintain the integrity of the cell envelope; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein lipoprotein complement(1422862..1423098) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613161.1 CDS IA1_06795 NC_022525.1 1423409 1424821 R catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate kinase complement(1423409..1424821) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613162.1 CDS IA1_06800 NC_022525.1 1425223 1426566 R Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid permease complement(1425223..1426566) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613163.1 CDS IA1_06805 NC_022525.1 1426588 1427481 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase complement(1426588..1427481) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613164.1 CDS IA1_06810 NC_022525.1 1427540 1428277 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1427540..1428277) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613165.1 CDS IA1_06815 NC_022525.1 1428289 1429515 R Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein complement(1428289..1429515) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613166.1 CDS IA1_06820 NC_022525.1 1429838 1432900 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tetrathionate reductase subunit A complement(1429838..1432900) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613167.1 CDS IA1_06825 NC_022525.1 1432893 1433915 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tetrathionate reductase subunit C complement(1432893..1433915) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613168.1 CDS IA1_06830 NC_022525.1 1433916 1434650 R Derived by automated computational analysis using gene prediction method: Protein Homology.; polysulfide reductase subunit B complement(1433916..1434650) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613169.1 CDS IA1_06835 NC_022525.1 1434832 1436610 D Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine kinase 1434832..1436610 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613170.1 CDS IA1_06840 NC_022525.1 1436585 1437205 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Tetrathionate response regulatory protein TtrR 1436585..1437205 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613171.1 CDS IA1_06845 NC_022525.1 1437303 1437515 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1437303..1437515 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613172.1 CDS IA1_06850 NC_022525.1 1437611 1438570 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1437611..1438570) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613173.1 CDS IA1_06855 NC_022525.1 1438742 1439470 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MerR family transcriptional regulator complement(1438742..1439470) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613174.1 CDS IA1_06860 NC_022525.1 1439649 1440287 R is phosphorylated by SsrA; is involved in the expression of the virulence genes of Salmonella pathogenicity island-2; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1439649..1440287) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613175.1 CDS IA1_06865 NC_022525.1 1440318 1443080 R phosphorylates the response regulator SsrB; is involved in the expression of the virulence genes of Salmonella pathogenicity island-2; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1440318..1443080) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613176.1 CDS spiC NC_022525.1 1443499 1443882 D involved in macrophage infection; inhibits phagosome-lysosome fusion and cellular trafficking; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; pathogenicity island chaperone protein SpiC 1443499..1443882 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613177.1 CDS IA1_06875 NC_022525.1 1443884 1445377 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane secretin SsaC 1443884..1445377 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613178.1 CDS IA1_06880 NC_022525.1 1445358 1446569 D Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SsaD 1445358..1446569 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613179.1 CDS IA1_06885 NC_022525.1 1446577 1446819 D Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; involved in the secretion of SseB; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system chaperone SsaE 1446577..1446819 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613180.1 CDS IA1_06890 NC_022525.1 1447086 1447409 D chaperone for SseB and SseD; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system chaperone SseA 1447086..1447409 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613181.1 CDS IA1_06895 NC_022525.1 1447416 1448006 D necessary for the correct localization of SseC and SseD on the bacterial cell surface; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 2 effector protein SseB 1447416..1448006 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613182.1 CDS IA1_06900 NC_022525.1 1448003 1448476 D may be involved in the translocation of effector proteins into the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 2 chaperone protein SscA 1448003..1448476 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613183.1 CDS IA1_06905 NC_022525.1 1448479 1449933 D may be involved in the translocation of effector proteins into the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 2 effector protein SseC 1448479..1449933 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613184.1 CDS IA1_06910 NC_022525.1 1449949 1450536 D may be involved in the translocation of effector proteins into the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 2 effector protein SseD 1449949..1450536 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613185.1 CDS IA1_06915 NC_022525.1 1450539 1450955 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; pathogenicity island 2 effector protein SseE 1450539..1450955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613186.1 CDS IA1_06920 NC_022525.1 1451007 1451441 D Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; chaperone for SseF; required for the efficient replication of Salmonella in host macrophages; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system chaperone protein SscB 1451007..1451441 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613187.1 CDS IA1_06925 NC_022525.1 1451457 1452239 D with SseG is involved in the aggregation of the host endosomes; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 2 effector protein SseF 1451457..1452239 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613188.1 CDS IA1_06930 NC_022525.1 1452338 1452925 D with SseF is involved in the aggregation of the host endosomes; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; pathogenicity island 2 effector protein SseG 1452338..1452925 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613189.1 CDS IA1_06935 NC_022525.1 1453019 1453234 D Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system needle protein SsaG 1453019..1453234 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613190.1 CDS IA1_06940 NC_022525.1 1453212 1453502 D Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SsaH 1453212..1453502 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613191.1 CDS IA1_06945 NC_022525.1 1453499 1453762 D Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system protein SsaI 1453499..1453762 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613192.1 CDS IA1_06950 NC_022525.1 1453759 1454508 D Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system lipoprotein SsaJ 1453759..1454508 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613193.1 CDS IA1_06955 NC_022525.1 1454802 1455074 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; pathogenicity island protein 1454802..1455074 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613194.1 CDS IA1_06960 NC_022525.1 1455071 1455745 D Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SsaK 1455071..1455745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613195.1 CDS IA1_06965 NC_022525.1 1455711 1456727 D Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; may be involved in regulation; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SsaL 1455711..1456727 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613196.1 CDS IA1_06970 NC_022525.1 1456785 1457153 D Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; is involved in the secretion of translocator and effector proteins; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system protein SsaM 1456785..1457153 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613197.1 CDS IA1_06975 NC_022525.1 1457138 1459183 D with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; Derived by automated computational analysis using gene prediction method: Protein Homology.; secretion system apparatus protein SsaV 1457138..1459183 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613198.1 CDS IA1_06980 NC_022525.1 1459173 1460474 D Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system ATPase 1459173..1460474 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613199.1 CDS IA1_06985 NC_022525.1 1460477 1460854 D Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SsaO 1460477..1460854 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613200.1 CDS IA1_06990 NC_022525.1 1460835 1461209 D Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system protein SsaP 1460835..1461209 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613201.1 CDS IA1_06995 NC_022525.1 1461190 1462158 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system protein SsaQ 1461190..1462158 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613202.1 CDS ssaR NC_022525.1 1462226 1462873 D part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliP 1462226..1462873 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613203.1 CDS fliQ NC_022525.1 1462870 1463136 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliQ 1462870..1463136 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613204.1 CDS IA1_07010 NC_022525.1 1463137 1463916 D Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system protein SsaT 1463137..1463916 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613205.1 CDS IA1_07015 NC_022525.1 1463913 1464971 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; secretion system apparatus protein SsaU 1463913..1464971 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613206.1 CDS IA1_07030 NC_022525.1 1465444 1466817 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(1465444..1466817) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613207.1 CDS IA1_07035 NC_022525.1 1467034 1467675 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; Derived by automated computational analysis using gene prediction method: Protein Homology.; riboflavin synthase subunit alpha 1467034..1467675 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613208.1 CDS IA1_07040 NC_022525.1 1467717 1468865 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclopropane fatty acyl phospholipid synthase complement(1467717..1468865) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613209.1 CDS IA1_07045 NC_022525.1 1469155 1470360 R uncharacterized member of the major facilitator superfamily (MFS); Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(1469155..1470360) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613210.1 CDS IA1_07050 NC_022525.1 1470473 1471405 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 1470473..1471405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613211.1 CDS IA1_07055 NC_022525.1 1471402 1472427 R binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1471402..1472427) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613212.1 CDS IA1_07060 NC_022525.1 1472723 1472812 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1472723..1472812 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613213.1 CDS IA1_07065 NC_022525.1 1472895 1473476 R SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; Derived by automated computational analysis using gene prediction method: Protein Homology.; superoxide dismutase complement(1472895..1473476) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613214.1 CDS IA1_07070 NC_022525.1 1473603 1474424 R Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase complement(1473603..1474424) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613215.1 CDS IA1_07075 NC_022525.1 1474759 1475106 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin 1474759..1475106 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613216.1 CDS IA1_07080 NC_022525.1 1475184 1475831 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease T complement(1475184..1475831) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613217.1 CDS IA1_07085 NC_022525.1 1475932 1476339 R Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; glyoxalase I complement(1475932..1476339) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613218.1 CDS IA1_07090 NC_022525.1 1476408 1477505 R FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-ethylmaleimide reductase complement(1476408..1477505) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613219.1 CDS IA1_07095 NC_022525.1 1477564 1478163 R represses nemA which is involved in degradation of N-ethylmaleimide; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1477564..1478163) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613220.1 CDS IA1_07100 NC_022525.1 1478556 1479452 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 1478556..1479452 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613221.1 CDS IA1_07105 NC_022525.1 1479532 1480053 D SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; Derived by automated computational analysis using gene prediction method: Protein Homology.; superoxide dismutase 1479532..1480053 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613222.1 CDS IA1_07110 NC_022525.1 1480029 1482068 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fusaric acid resistance protein complement(1480029..1482068) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613223.1 CDS IA1_07115 NC_022525.1 1482068 1482841 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(1482068..1482841) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613224.1 CDS IA1_07120 NC_022525.1 1482931 1483167 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(1482931..1483167) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613225.1 CDS IA1_07125 NC_022525.1 1483362 1483802 D Transcription regulator that can both activate or repress expression; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; MarR family transcriptional regulator 1483362..1483802 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613226.1 CDS IA1_07130 NC_022525.1 1483850 1484317 R Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein pcp complement(1483850..1484317) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613227.1 CDS anmK NC_022525.1 1484589 1485710 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; Derived by automated computational analysis using gene prediction method: Protein Homology.; anhydro-N-acetylmuramic acid kinase 1484589..1485710 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613228.1 CDS IA1_07140 NC_022525.1 1485798 1486127 D MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme inhibitor 1485798..1486127 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613229.1 CDS IA1_07145 NC_022525.1 1486186 1486842 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxamine 5'-phosphate oxidase 1486186..1486842 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613230.1 CDS IA1_07150 NC_022525.1 1486969 1488243 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosyl-tRNA synthetase 1486969..1488243 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613231.1 CDS IA1_07155 NC_022525.1 1488303 1489163 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; pyridoxamine kinase 1488303..1489163 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613232.1 CDS IA1_07160 NC_022525.1 1489222 1489827 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathionine S-transferase complement(1489222..1489827) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613233.1 CDS tppB NC_022525.1 1489932 1491437 R mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(1489932..1491437) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613234.1 CDS IA1_07170 NC_022525.1 1492039 1492674 R DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease IV complement(1492039..1492674) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613235.1 CDS IA1_07175 NC_022525.1 1492674 1493366 R Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor G complement(1492674..1493366) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613236.1 CDS IA1_07180 NC_022525.1 1493369 1493989 R part of membrane-bound complex hought to be involved in electron transport to nitrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transport complex protein RsxA complement(1493369..1493989) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613237.1 CDS rnfD NC_022525.1 1493993 1495051 R RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter RnfG complement(1493993..1495051) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613238.1 CDS IA1_07195 NC_022525.1 1497160 1497738 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter RnfD complement(1497160..1497738) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613239.1 CDS IA1_07200 NC_022525.1 1497738 1498319 R Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transport complex RsxE subunit complement(1497738..1498319) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613240.1 CDS IA1_07205 NC_022525.1 1498396 1498869 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(1498396..1498869) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613241.1 CDS IA1_07210 NC_022525.1 1498925 1499140 R YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; Derived by automated computational analysis using gene prediction method: Protein Homology.; oriC-binding nucleoid-associated protein complement(1498925..1499140) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613242.1 CDS IA1_07215 NC_022525.1 1499437 1499592 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; beta-lactam resistance protein complement(1499437..1499592) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613243.1 CDS IA1_07220 NC_022525.1 1499770 1500810 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 1499770..1500810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613244.1 CDS IA1_07225 NC_022525.1 1500884 1501885 R Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosine deaminase complement(1500884..1501885) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613245.1 CDS IA1_07230 NC_022525.1 1502103 1503275 R catalyzes the formation of homocysteine and pyruvate from cystathionine; also acts a a negative regulator for the mal regulon but interacting with the transcriptional activator MalT; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aminotransferase complement(1502103..1503275) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613246.1 CDS IA1_07235 NC_022525.1 1503285 1504877 R phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS); catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane; component IIB catalyzes the phosphorylation of the sugar molecule; IIC forms the translocation channel and contains the substrate specific binding site; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS maltose transporter subunit IICB complement(1503285..1504877) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613247.1 CDS IA1_07240 NC_022525.1 1505050 1506078 D regulates malXY which are involved in maltose-glucose transport; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LacI family transcriptional regulator 1505050..1506078 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613248.1 CDS IA1_07245 NC_022525.1 1506136 1507644 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1506136..1507644) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613249.1 CDS IA1_07250 NC_022525.1 1507747 1508922 R catalyzes the formation of of fructose 6-phosphate from mannose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannose-6-phosphate isomerase complement(1507747..1508922) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613250.1 CDS IA1_07255 NC_022525.1 1509122 1510768 D catalyzes the formation of malate from fumerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase 1509122..1510768 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613251.1 CDS fumC NC_022525.1 1510936 1512339 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase 1510936..1512339 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613252.1 CDS IA1_07265 NC_022525.1 1512336 1513265 R binds to DNA replication terminator sequences to prevent passage of replication forks; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein complement(1512336..1513265) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613253.1 CDS IA1_07270 NC_022525.1 1513341 1514642 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein RstB complement(1513341..1514642) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613254.1 CDS IA1_07275 NC_022525.1 1514754 1516454 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; metallo-dependent Hydrolase complement(1514754..1516454) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613255.1 CDS IA1_07280 NC_022525.1 1516613 1517764 R allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin protein C complement(1516613..1517764) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613256.1 CDS IA1_07285 NC_022525.1 1517881 1518066 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1517881..1518066 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613257.1 CDS IA1_07290 NC_022525.1 1518244 1518975 R Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheY complement(1518244..1518975) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613258.1 CDS IA1_07295 NC_022525.1 1519102 1519437 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1519102..1519437 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613259.1 CDS IA1_07300 NC_022525.1 1519499 1520881 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine:ornithine antiporter complement(1519499..1520881) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613260.1 CDS IA1_07305 NC_022525.1 1521180 1522124 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1521180..1522124) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613261.1 CDS pntA NC_022525.1 1522651 1524180 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P) transhydrogenase subunit alpha 1522651..1524180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613262.1 CDS pntB NC_022525.1 1524191 1525579 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridine nucleotide transhydrogenase 1524191..1525579 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613263.1 CDS tqsA NC_022525.1 1525754 1526788 R transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; pheromone autoinducer 2 transporter complement(1525754..1526788) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613264.1 CDS IA1_07325 NC_022525.1 1526957 1527094 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1526957..1527094 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613265.1 CDS IA1_07330 NC_022525.1 1527206 1527568 D with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 1527206..1527568 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613266.1 CDS IA1_07335 NC_022525.1 1527555 1527884 D with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 1527555..1527884 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613267.1 CDS IA1_07340 NC_022525.1 1527924 1528745 R Derived by automated computational analysis using gene prediction method: Protein Homology.; serine protease complement(1527924..1528745) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613268.1 CDS IA1_07345 NC_022525.1 1529014 1529298 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acid shock protein precursor complement(1529014..1529298) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613269.1 CDS IA1_07350 NC_022525.1 1529657 1530910 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1529657..1530910) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613270.1 CDS IA1_07355 NC_022525.1 1531030 1531929 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 1531030..1531929 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613271.1 CDS IA1_07360 NC_022525.1 1532057 1533277 D mlc, controls the expression of genes involved in the phosphotransferase and phosphoenolpyruvate systems, regulates genes involved in the uptake of sugars; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1532057..1533277 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613272.1 CDS IA1_07365 NC_022525.1 1533403 1534098 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; Derived by automated computational analysis using gene prediction method: Protein Homology.; dithiobiotin synthetase 1533403..1534098 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613273.1 CDS IA1_07370 NC_022525.1 1534054 1535343 R Derived by automated computational analysis using gene prediction method: Protein Homology.; voltage-gated ClC-type chloride channel ClcB complement(1534054..1535343) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613274.1 CDS IA1_07375 NC_022525.1 1535479 1536627 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter ATP-binding protein complement(1535479..1536627) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613275.1 CDS IA1_07380 NC_022525.1 1536627 1537274 R Derived by automated computational analysis using gene prediction method: Protein Homology.; choline ABC transporter permease complement(1536627..1537274) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613276.1 CDS IA1_07385 NC_022525.1 1537284 1538186 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter substrate-binding protein complement(1537284..1538186) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613277.1 CDS IA1_07390 NC_022525.1 1538215 1538925 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter permease complement(1538215..1538925) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613278.1 CDS IA1_07395 NC_022525.1 1539230 1539844 R binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; twin-argninine leader-binding protein DmsD complement(1539230..1539844) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613279.1 CDS IA1_07400 NC_022525.1 1539887 1540744 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit H complement(1539887..1540744) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613280.1 CDS IA1_07405 NC_022525.1 1540746 1541363 R oxidoreductase, Fe-S subunit; terminal electron transfer protein for the reduction of DMSO; Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit B complement(1540746..1541363) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613281.1 CDS IA1_07410 NC_022525.1 1541374 1543809 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit A complement(1541374..1543809) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613282.1 CDS IA1_07415 NC_022525.1 1543908 1546346 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit A complement(1543908..1546346) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613283.1 CDS IA1_07420 NC_022525.1 1546503 1546808 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(1546503..1546808) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613284.1 CDS IA1_07425 NC_022525.1 1546915 1547625 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 1546915..1547625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613285.1 CDS IA1_07430 NC_022525.1 1547666 1548226 R catalyzes the formation of N(1)- and N(8)-acetylspermidine from spermidine; Derived by automated computational analysis using gene prediction method: Protein Homology.; spermidine N1-acetyltransferase complement(1547666..1548226) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613286.1 CDS IA1_07435 NC_022525.1 1548262 1548603 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1548262..1548603) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613287.1 CDS IA1_07440 NC_022525.1 1548755 1549081 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1548755..1549081 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613288.1 CDS IA1_07445 NC_022525.1 1549203 1550417 D starvation-sensing protein; maybe involved in homoserine lactone degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional D-altronate/D-mannonate dehydratase 1549203..1550417 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613289.1 CDS IA1_07450 NC_022525.1 1550428 1551447 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 1550428..1551447 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613290.1 CDS IA1_07455 NC_022525.1 1551540 1552880 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; MFS transporter 1551540..1552880 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613291.1 CDS IA1_07460 NC_022525.1 1553024 1554490 D Derived by automated computational analysis using gene prediction method: Protein Homology.; D-mannonate oxidoreductase 1553024..1554490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613292.1 CDS IA1_07465 NC_022525.1 1554557 1554760 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1554557..1554760) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613293.1 CDS IA1_07470 NC_022525.1 1554941 1555627 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator complement(1554941..1555627) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613294.1 CDS IA1_07475 NC_022525.1 1555757 1556503 R NADP(+)-dependent; catalyzes the formation of 3-hydroxypropionate from the toxic malonic semialdehyde, catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; malonic semialdehyde reductase complement(1555757..1556503) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613295.1 CDS IA1_07480 NC_022525.1 1556642 1558684 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dipeptidyl carboxypeptidase II 1556642..1558684 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613296.1 CDS IA1_07485 NC_022525.1 1559028 1559210 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1559028..1559210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613297.1 CDS IA1_07490 NC_022525.1 1559330 1559857 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1559330..1559857) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613298.1 CDS IA1_07495 NC_022525.1 1560284 1560676 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1560284..1560676 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613299.1 CDS IA1_07500 NC_022525.1 1561024 1561119 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(1561024..1561119) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613300.1 CDS IA1_07505 NC_022525.1 1561367 1562554 R YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transporter complement(1561367..1562554) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613301.1 CDS IA1_07510 NC_022525.1 1562782 1563684 D Derived by automated computational analysis using gene prediction method: Protein Homology.; O-acetylserine/cysteine export protein 1562782..1563684 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613302.1 CDS IA1_07515 NC_022525.1 1563803 1564018 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1563803..1564018) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613303.1 CDS IA1_07520 NC_022525.1 1564047 1564430 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1564047..1564430) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613304.1 CDS IA1_07525 NC_022525.1 1564450 1564884 R Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1564450..1564884) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613305.1 CDS IA1_07530 NC_022525.1 1565143 1565808 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1565143..1565808 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613306.1 CDS IA1_07535 NC_022525.1 1565855 1567045 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose transporter complement(1565855..1567045) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613307.1 CDS IA1_07540 NC_022525.1 1567161 1568033 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(1567161..1568033) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613308.1 CDS IA1_07545 NC_022525.1 1568136 1569524 D Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase 1568136..1569524 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613309.1 CDS IA1_07550 NC_022525.1 1569597 1570523 D catalyzes the formation of glutamate from glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaminase 1569597..1570523 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613310.1 CDS IA1_07555 NC_022525.1 1570523 1570882 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1570523..1570882 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613311.1 CDS IA1_07560 NC_022525.1 1571104 1572051 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1571104..1572051 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613312.1 CDS IA1_07565 NC_022525.1 1572107 1572649 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1572107..1572649) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613313.1 CDS IA1_07570 NC_022525.1 1573366 1574484 D allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin protein C 1573366..1574484 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613314.1 CDS hypA NC_022525.1 1574625 1574966 R plays a role in hydrogenase nickel cofactor insertion; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase nickel incorporation protein complement(1574625..1574966) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613315.1 CDS IA1_07580 NC_022525.1 1574979 1575866 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP/GTP-binding protein complement(1574979..1575866) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613316.1 CDS IA1_07585 NC_022525.1 1575854 1576915 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase-1 operon protein HyaF2 complement(1575854..1576915) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613317.1 CDS IA1_07590 NC_022525.1 1576933 1577343 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase complement(1576933..1577343) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613318.1 CDS IA1_07595 NC_022525.1 1577340 1577639 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase formation protein complement(1577340..1577639) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613319.1 CDS IA1_07600 NC_022525.1 1577639 1578247 R HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1 maturation protease complement(1577639..1578247) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613320.1 CDS IA1_07605 NC_022525.1 1578253 1578927 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1 b-type cytochrome subunit complement(1578253..1578927) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613321.1 CDS IA1_07610 NC_022525.1 1578947 1580749 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase complement(1578947..1580749) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613322.1 CDS IA1_07615 NC_022525.1 1580752 1581855 R Derived by automated computational analysis using gene prediction method: Protein Homology.; uptake hydrogenase small subunit complement(1580752..1581855) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613323.1 CDS IA1_07620 NC_022525.1 1582283 1583374 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 1582283..1583374 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613324.1 CDS IA1_07625 NC_022525.1 1583540 1584211 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1583540..1584211 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613325.1 CDS IA1_07630 NC_022525.1 1584270 1585295 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase complement(1584270..1585295) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613326.1 CDS IA1_07635 NC_022525.1 1585270 1586556 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hexuronate transporter complement(1585270..1586556) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613327.1 CDS IA1_07640 NC_022525.1 1586733 1588289 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PhoPQ-regulated protein complement(1586733..1588289) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613328.1 CDS IA1_07645 NC_022525.1 1588359 1589600 R Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(1588359..1589600) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613329.1 CDS IA1_07650 NC_022525.1 1589590 1591098 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1589590..1591098) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613330.1 CDS IA1_07655 NC_022525.1 1591143 1591631 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MarR family transcriptional regulator 1591143..1591631 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613331.1 CDS IA1_07660 NC_022525.1 1591824 1592903 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; S-adenosylmethionine tRNA ribosyltransferase 1591824..1592903 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613332.1 CDS IA1_07665 NC_022525.1 1592955 1593416 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; endoribonuclease L-PSP complement(1592955..1593416) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613333.1 CDS IA1_07670 NC_022525.1 1593515 1593799 R Derived by automated computational analysis using gene prediction method: Protein Homology.; RelE toxin complement(1593515..1593799) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613334.1 CDS IA1_07675 NC_022525.1 1593789 1594037 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; plasmid stabilization protein complement(1593789..1594037) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613335.1 CDS IA1_07680 NC_022525.1 1594257 1594640 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(1594257..1594640) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613336.1 CDS IA1_07685 NC_022525.1 1594993 1595283 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1594993..1595283) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613337.1 CDS IA1_07690 NC_022525.1 1595585 1597051 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; coiled-coil protein complement(1595585..1597051) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613338.1 CDS IA1_07695 NC_022525.1 1597309 1598316 D controls transcription of galETKM; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1597309..1598316 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613339.1 CDS IA1_07700 NC_022525.1 1598460 1599911 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 1598460..1599911 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613340.1 CDS IA1_07705 NC_022525.1 1599924 1601126 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aminotransferase 1599924..1601126 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613341.1 CDS IA1_07710 NC_022525.1 1601239 1603314 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen-debranching protein complement(1601239..1603314) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613342.1 CDS IA1_07715 NC_022525.1 1603371 1605899 R Derived by automated computational analysis using gene prediction method: Protein Homology.; malto-oligosyltrehalose synthase complement(1603371..1605899) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613343.1 CDS IA1_07720 NC_022525.1 1605896 1607680 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; malto-oligosyltrehalose trehalohydrolase complement(1605896..1607680) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613344.1 CDS IA1_07725 NC_022525.1 1607809 1608594 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1607809..1608594) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613345.1 CDS IA1_07730 NC_022525.1 1608737 1609066 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acid-resistance protein complement(1608737..1609066) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613346.1 CDS IA1_07735 NC_022525.1 1609416 1609847 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peroxiredoxin complement(1609416..1609847) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613347.1 CDS IA1_07740 NC_022525.1 1610359 1610574 D Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm-dependent modulation protein 1610359..1610574 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613348.1 CDS rpsV NC_022525.1 1610669 1610812 D protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 30S ribosomal protein S22 1610669..1610812 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613349.1 CDS IA1_07750 NC_022525.1 1610989 1612686 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate dehydrogenase 1610989..1612686 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613350.1 CDS adhP NC_022525.1 1612972 1613982 D similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetaldehyde reductase 1612972..1613982 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613351.1 CDS IA1_07760 NC_022525.1 1614073 1614729 R cytochrome b556(FDO) component; heme containing; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit gamma complement(1614073..1614729) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613352.1 CDS IA1_07765 NC_022525.1 1614722 1615606 R beta subunit; involved in the use of formate as an electron donor during aerobic respiration; acts to transfer electrons from the major(alpha subunit) to the cytochrome b556(gamma subunit); Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit beta complement(1614722..1615606) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613353.1 CDS IA1_07770 NC_022525.1 1615620 1618031 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; formate dehydrogenase subunit alpha complement(1615620..1618031) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613354.1 CDS IA1_07775 NC_022525.1 1618080 1618667 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sulfate ABC transporter substrate-binding protein complement(1618080..1618667) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613355.1 CDS IA1_07780 NC_022525.1 1618945 1619826 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid exporter 1618945..1619826 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613356.1 CDS IA1_07785 NC_022525.1 1620351 1621439 D allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin protein C 1620351..1621439 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613357.1 CDS IA1_07790 NC_022525.1 1621643 1621963 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1621643..1621963 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613358.1 CDS IA1_07795 NC_022525.1 1621988 1623475 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl viologen resistance protein SmvA complement(1621988..1623475) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613359.1 CDS IA1_07800 NC_022525.1 1623593 1624171 D Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator 1623593..1624171 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613360.1 CDS IA1_07805 NC_022525.1 1624385 1625773 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite extrusion protein 2 1624385..1625773 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613361.1 CDS narZ NC_022525.1 1625851 1629591 D with NarYV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit alpha 1625851..1629591 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613362.1 CDS narH NC_022525.1 1629588 1631132 D with NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit beta 1629588..1631132 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613363.1 CDS IA1_07820 NC_022525.1 1631132 1631827 D delta subunit of nitrate reductase 1; chaperone for the insertion of the molybdenum cofactor and assembly of nitrate reductase 1; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase molybdenum cofactor assembly chaperone NarJ 1631132..1631827 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613364.1 CDS narI NC_022525.1 1631824 1632504 D with NarGJH catalyzes the reduction of nitrate; the gamma subunit localizes NarGHI to the membrane; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit gamma 1631824..1632504 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613365.1 CDS IA1_07830 NC_022525.1 1632610 1633503 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1632610..1633503 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613366.1 CDS IA1_07835 NC_022525.1 1633539 1634384 R catalyzes the addition of the acetyl moity of acetyl-CoA to an N-hydroxy-arylamine to form an N-acetoxyarylamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-hydroxyarylamine O-acetyltransferase complement(1633539..1634384) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613367.1 CDS IA1_07840 NC_022525.1 1634666 1635298 R Derived by automated computational analysis using gene prediction method: Protein Homology.; effector protein steA complement(1634666..1635298) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613368.1 CDS IA1_07845 NC_022525.1 1635806 1637299 D Derived by automated computational analysis using gene prediction method: Protein Homology.; L-asparagine permease 1635806..1637299 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613369.1 CDS IA1_07850 NC_022525.1 1637376 1637597 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1637376..1637597) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613370.1 CDS IA1_07855 NC_022525.1 1637742 1638803 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1637742..1638803) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613371.1 CDS IA1_07860 NC_022525.1 1639067 1641187 D Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent receptor 1639067..1641187 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613372.1 CDS IA1_07865 NC_022525.1 1641243 1641908 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1641243..1641908) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613373.1 CDS IA1_07870 NC_022525.1 1642242 1643279 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1642242..1643279) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613374.1 CDS IA1_07875 NC_022525.1 1643503 1644018 D Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyltransferase 1643503..1644018 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613375.1 CDS IA1_07880 NC_022525.1 1644018 1644467 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1644018..1644467 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613376.1 CDS IA1_07885 NC_022525.1 1644472 1644705 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1644472..1644705) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613377.1 CDS IA1_07890 NC_022525.1 1644929 1646254 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ssrAB activated protein 1644929..1646254 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613378.1 CDS IA1_07895 NC_022525.1 1646259 1649240 D Derived by automated computational analysis using gene prediction method: Protein Homology.; virulence factor SrfB 1646259..1649240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613379.1 CDS IA1_07900 NC_022525.1 1649237 1651381 D Derived by automated computational analysis using gene prediction method: Protein Homology.; virulence effector SrfC 1649237..1651381 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613380.1 CDS IA1_07905 NC_022525.1 1651426 1651608 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1651426..1651608) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613381.1 CDS IA1_07910 NC_022525.1 1651798 1651893 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1651798..1651893 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613382.1 CDS IA1_07915 NC_022525.1 1651998 1653443 R catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-aminobutyraldehyde dehydrogenase complement(1651998..1653443) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613383.1 CDS IA1_07920 NC_022525.1 1653558 1654982 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator complement(1653558..1654982) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613384.1 CDS IA1_07925 NC_022525.1 1655118 1655888 R Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine dipeptidase complement(1655118..1655888) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613385.1 CDS IA1_07930 NC_022525.1 1656410 1656718 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; D-alanyl-D-alanine dipeptidase complement(1656410..1656718) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613386.1 CDS sifB NC_022525.1 1657345 1658295 D translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; Derived by automated computational analysis using gene prediction method: Protein Homology.; effector protein SifB 1657345..1658295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613387.1 CDS IA1_07940 NC_022525.1 1658566 1658799 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1658566..1658799 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613388.1 CDS IA1_07945 NC_022525.1 1658800 1660764 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protease complement(1658800..1660764) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613389.1 CDS IA1_07950 NC_022525.1 1660843 1661379 R Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator complement(1660843..1661379) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613390.1 CDS IA1_07955 NC_022525.1 1661471 1662649 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1661471..1662649 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613391.1 CDS IA1_07960 NC_022525.1 1662703 1663371 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1662703..1663371) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613392.1 CDS IA1_07965 NC_022525.1 1663527 1664123 R with TehA confers resistance to tellurite; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tellurite resistance protein TehB complement(1663527..1664123) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613393.1 CDS IA1_07970 NC_022525.1 1664110 1665123 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tellurite resistance protein TehA complement(1664110..1665123) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613394.1 CDS IA1_07975 NC_022525.1 1665230 1666210 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase 1665230..1666210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613395.1 CDS IA1_07980 NC_022525.1 1666207 1666746 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal-protein-L7/L12-serine acetyltransferase complement(1666207..1666746) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613396.1 CDS IA1_07985 NC_022525.1 1666963 1668081 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase 1666963..1668081 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613397.1 CDS IA1_07990 NC_022525.1 1668078 1668359 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIB 1668078..1668359 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613398.1 CDS IA1_07995 NC_022525.1 1668370 1669683 D Derived by automated computational analysis using gene prediction method: Protein Homology.; permase 1668370..1669683 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613399.1 CDS IA1_08000 NC_022525.1 1669697 1670503 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sgc region protein SgcQ 1669697..1670503 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613400.1 CDS IA1_08005 NC_022525.1 1670635 1671072 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIA 1670635..1671072 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613401.1 CDS IA1_08010 NC_022525.1 1671084 1671716 D Derived by automated computational analysis using gene prediction method: Protein Homology.; epimerase 1671084..1671716 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613402.1 CDS IA1_08015 NC_022525.1 1671726 1672523 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1671726..1672523 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613403.1 CDS IA1_08020 NC_022525.1 1672523 1672960 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoglycoside N(6')-acetyltransferase 1672523..1672960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613404.1 CDS IA1_08025 NC_022525.1 1673015 1674217 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-lactate oxidase complement(1673015..1674217) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613405.1 CDS IA1_08030 NC_022525.1 1674229 1674804 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1674229..1674804) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613406.1 CDS mdoD NC_022525.1 1675000 1676655 R involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucan biosynthesis protein D complement(1675000..1676655) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613407.1 CDS IA1_08040 NC_022525.1 1676875 1678383 R Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxylesterase complement(1676875..1678383) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613408.1 CDS IA1_08045 NC_022525.1 1678432 1679775 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1678432..1679775) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613409.1 CDS IA1_08050 NC_022525.1 1680068 1680991 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 1680068..1680991 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613410.1 CDS IA1_08055 NC_022525.1 1681052 1682677 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein complement(1681052..1682677) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613411.1 CDS IA1_08060 NC_022525.1 1682846 1683964 R catalyzes the formation of S-formylglutathione from S-(hydroxymethyl)glutathione; also catalyzes the formation of aldehyde or ketone from alcohols; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-(hydroxymethyl)glutathione dehydrogenase complement(1682846..1683964) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613412.1 CDS IA1_08065 NC_022525.1 1683996 1684271 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1683996..1684271) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613413.1 CDS IA1_08070 NC_022525.1 1685034 1685159 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1685034..1685159) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613414.1 CDS IA1_08075 NC_022525.1 1685324 1686007 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(1685324..1686007) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613415.1 CDS IA1_08080 NC_022525.1 1686466 1687692 D involved in bacterial survival in the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 2 effector protein SseJ 1686466..1687692 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613416.1 CDS IA1_08085 NC_022525.1 1687813 1688157 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1687813..1688157) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613417.1 CDS IA1_08090 NC_022525.1 1689064 1689825 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid-binding protein 1689064..1689825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613418.1 CDS IA1_08095 NC_022525.1 1689832 1690479 D Derived by automated computational analysis using gene prediction method: Protein Homology.; polar amino acid ABC transporter ATP-binding protein 1689832..1690479 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613419.1 CDS IA1_08100 NC_022525.1 1690504 1691235 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate ABC transporter ATP-binding protein 1690504..1691235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613420.1 CDS IA1_08105 NC_022525.1 1691232 1691912 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease 1691232..1691912 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613421.1 CDS IA1_08110 NC_022525.1 1692202 1693599 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1692202..1693599 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613422.1 CDS IA1_08115 NC_022525.1 1693600 1693695 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1693600..1693695) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613423.1 CDS IA1_08120 NC_022525.1 1694207 1694725 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; SAM-dependent methyltransferase 1694207..1694725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613424.1 CDS IA1_08125 NC_022525.1 1694996 1695526 R B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome B561 complement(1694996..1695526) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613425.1 CDS IA1_08130 NC_022525.1 1695643 1696443 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1695643..1696443) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613426.1 CDS IA1_08135 NC_022525.1 1696507 1700427 R involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase complement(1696507..1700427) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613427.1 CDS IA1_08140 NC_022525.1 1700610 1701215 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; Derived by automated computational analysis using gene prediction method: Protein Homology.; azoreductase 1700610..1701215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613428.1 CDS IA1_08145 NC_022525.1 1701212 1701550 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; S-(hydroxymethyl)glutathione synthase complement(1701212..1701550) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613429.1 CDS IA1_08150 NC_022525.1 1701804 1702127 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1701804..1702127) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613430.1 CDS IA1_08155 NC_022525.1 1702135 1702326 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1702135..1702326) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613431.1 CDS IA1_08160 NC_022525.1 1702326 1704962 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1702326..1704962) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613432.1 CDS IA1_08165 NC_022525.1 1705202 1706191 D fermentative; catalyzes the formationof pyruvate from lactate; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-lactate dehydrogenase 1705202..1706191 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613433.1 CDS IA1_08170 NC_022525.1 1706302 1706712 D Derived by automated computational analysis using gene prediction method: Protein Homology.; heat-inducible protein 1706302..1706712 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613434.1 CDS IA1_08175 NC_022525.1 1706756 1707022 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1706756..1707022) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613435.1 CDS IA1_08180 NC_022525.1 1707298 1710822 D Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate-flavodoxin oxidoreductase 1707298..1710822 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613436.1 CDS IA1_08185 NC_022525.1 1711304 1711738 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1711304..1711738 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613437.1 CDS IA1_08190 NC_022525.1 1711788 1712126 R Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(1711788..1712126) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613438.1 CDS IA1_08195 NC_022525.1 1712119 1712271 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; multidrug transporter complement(1712119..1712271) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613439.1 CDS IA1_08200 NC_022525.1 1712481 1713416 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; forms 2-thiocytidine (s(2)C); Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA 2-thiocytidine biosynthesis protein TtcA 1712481..1713416 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613440.1 CDS IA1_08205 NC_022525.1 1713460 1714833 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase complement(1713460..1714833) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613441.1 CDS zntB NC_022525.1 1715320 1716303 R Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter complement(1715320..1716303) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613442.1 CDS IA1_08215 NC_022525.1 1716449 1717603 R Derived by automated computational analysis using gene prediction method: Protein Homology.; chemo-receptor protein complement(1716449..1717603) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613443.1 CDS IA1_08220 NC_022525.1 1717996 1718559 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA endonuclease SmrA complement(1717996..1718559) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613444.1 CDS IA1_08225 NC_022525.1 1718817 1719332 D Derived by automated computational analysis using gene prediction method: Protein Homology.; methylated-DNA--protein-cysteine methyltransferase 1718817..1719332 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613445.1 CDS IA1_08230 NC_022525.1 1719528 1720280 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate/nitrate reduction transcriptional regulator 1719528..1720280 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613446.1 CDS IA1_08235 NC_022525.1 1720431 1721378 D with UspC and UspD is involved in resistance to UV irradiation; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein E 1720431..1721378 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613447.1 CDS IA1_08240 NC_022525.1 1721433 1721687 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1721433..1721687) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613448.1 CDS IA1_08245 NC_022525.1 1721926 1722957 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MscS family inner membrane protein YnaI 1721926..1722957 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613449.1 CDS IA1_08250 NC_022525.1 1723043 1723645 R Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator complement(1723043..1723645) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613450.1 CDS IA1_08255 NC_022525.1 1723689 1724375 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1723689..1724375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613451.1 CDS IA1_08260 NC_022525.1 1724403 1724741 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Dimeric alpha-beta barrel domain protein 1724403..1724741 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613452.1 CDS IA1_08265 NC_022525.1 1724848 1725405 R Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol peroxidase complement(1724848..1725405) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613453.1 CDS IA1_08270 NC_022525.1 1725501 1726325 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(1725501..1726325) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613454.1 CDS IA1_08275 NC_022525.1 1726352 1728334 R Derived by automated computational analysis using gene prediction method: Protein Homology.; invasin complement(1726352..1728334) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613455.1 CDS IA1_08280 NC_022525.1 1728409 1729254 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(1728409..1729254) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613456.1 CDS IA1_08285 NC_022525.1 1729554 1730405 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1729554..1730405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613457.1 CDS IA1_08290 NC_022525.1 1730797 1731906 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1730797..1731906 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613458.1 CDS IA1_08295 NC_022525.1 1732120 1732356 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1732120..1732356) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613459.1 CDS IA1_08300 NC_022525.1 1732485 1733075 R Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator complement(1732485..1733075) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613460.1 CDS IA1_08305 NC_022525.1 1733153 1733866 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 1733153..1733866 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613461.1 CDS IA1_08310 NC_022525.1 1733957 1734826 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aldo/keto reductase complement(1733957..1734826) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613462.1 CDS IA1_08315 NC_022525.1 1735103 1736008 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(1735103..1736008) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613463.1 CDS IA1_08320 NC_022525.1 1736127 1737056 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2'-hydroxyisoflavone reductase 1736127..1737056 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613464.1 CDS IA1_08325 NC_022525.1 1737153 1738766 R is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein complement(1737153..1738766) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613465.1 CDS IA1_08330 NC_022525.1 1738956 1739684 D Derived by automated computational analysis using gene prediction method: Protein Homology.; murein peptide amidase A 1738956..1739684 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613466.1 CDS IA1_08335 NC_022525.1 1739659 1740624 R catalyzes the epimerization of L-alanyl-D-glutamate to L-alanyl-L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-Ala-D/L-Glu epimerase complement(1739659..1740624) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613467.1 CDS tpx NC_022525.1 1740740 1741246 D antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid hydroperoxide peroxidase 1740740..1741246 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613468.1 CDS IA1_08345 NC_022525.1 1741336 1742877 R regulates genes involved in the biosynthesis and transport of aromatic amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1741336..1742877) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613469.1 CDS IA1_08350 NC_022525.1 1743025 1744086 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1743025..1744086) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613470.1 CDS IA1_08355 NC_022525.1 1744083 1745480 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1744083..1745480) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613471.1 CDS IA1_08360 NC_022525.1 1745629 1745943 R rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate:cyanide sulfurtransferase complement(1745629..1745943) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613472.1 CDS IA1_08365 NC_022525.1 1746019 1746237 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein complement(1746019..1746237) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613473.1 CDS IA1_08370 NC_022525.1 1746260 1746619 R with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1746260..1746619) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613474.1 CDS pspB NC_022525.1 1746619 1746843 R DNA-binding transcriptional regulator; acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein complement(1746619..1746843) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613475.1 CDS IA1_08380 NC_022525.1 1746903 1747571 R involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein complement(1746903..1747571) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613476.1 CDS pspF NC_022525.1 1747727 1748722 D transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1747727..1748722 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613477.1 CDS IA1_08390 NC_022525.1 1748834 1750483 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1748834..1750483 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613478.1 CDS IA1_08395 NC_022525.1 1750480 1751445 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1750480..1751445 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613479.1 CDS IA1_08400 NC_022525.1 1751432 1752322 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1751432..1752322 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613480.1 CDS IA1_08405 NC_022525.1 1752322 1753314 D involved in resistance to antimibial peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein 1752322..1753314 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613481.1 CDS IA1_08410 NC_022525.1 1753316 1754122 D with OppABCD is involved in the transport of oligopeptides; OppF and OppD are ATP-binding proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein 1753316..1754122 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613482.1 CDS IA1_08420 NC_022525.1 1755311 1756684 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase complement(1755311..1756684) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613483.1 CDS IA1_08425 NC_022525.1 1757290 1758078 D Catalyzes a key regulatory step in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-ACP reductase 1757290..1758078 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613484.1 CDS IA1_08430 NC_022525.1 1758278 1759411 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1758278..1759411 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613485.1 CDS IA1_08435 NC_022525.1 1759500 1761434 D Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; Derived by automated computational analysis using gene prediction method: Protein Homology.; exoribonuclease II 1759500..1761434 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613486.1 CDS IA1_08440 NC_022525.1 1761687 1763678 D c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNase II stability modulator 1761687..1763678 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613487.1 CDS IA1_08445 NC_022525.1 1763800 1763979 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1763800..1763979 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613488.1 CDS IA1_08450 NC_022525.1 1764066 1764818 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 1764066..1764818 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613489.1 CDS IA1_08455 NC_022525.1 1765077 1765295 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lipoprotein 1765077..1765295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613490.1 CDS IA1_08460 NC_022525.1 1765415 1765741 R involved in start site selection during the initiation of translation; Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor Sui1 complement(1765415..1765741) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613491.1 CDS IA1_08465 NC_022525.1 1765741 1766538 R Derived by automated computational analysis using gene prediction method: Protein Homology.; orotidine 5'-phosphate decarboxylase complement(1765741..1766538) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613492.1 CDS IA1_08470 NC_022525.1 1766669 1767838 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1766669..1767838) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613493.1 CDS IA1_08475 NC_022525.1 1767845 1768153 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1767845..1768153) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613494.1 CDS IA1_08480 NC_022525.1 1768303 1769067 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylglycerophosphatase B complement(1768303..1769067) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613495.1 CDS ribA NC_022525.1 1769263 1769853 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GTP cyclohydrolase II 1769263..1769853 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613496.1 CDS IA1_08490 NC_022525.1 1769909 1772584 R Catalyzes the conversion of citrate to isocitrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; aconitate hydratase complement(1769909..1772584) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613497.1 CDS IA1_08495 NC_022525.1 1772969 1773139 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1772969..1773139) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613498.1 CDS IA1_08500 NC_022525.1 1773140 1773268 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1773140..1773268) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613499.1 CDS cysB NC_022525.1 1773561 1774535 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; CysB family transcriptional regulator complement(1773561..1774535) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613500.1 CDS IA1_08510 NC_022525.1 1774947 1777544 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; Derived by automated computational analysis using gene prediction method: Protein Homology.; topoisomerase I complement(1774947..1777544) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613501.1 CDS IA1_08515 NC_022525.1 1777947 1778198 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1777947..1778198 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613502.1 CDS IA1_08520 NC_022525.1 1778240 1779286 R multicopy suppressor of htrA(degP); Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase complement(1778240..1779286) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613503.1 CDS IA1_08525 NC_022525.1 1779524 1780285 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxoacyl-ACP reductase 1779524..1780285 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613504.1 CDS IA1_08530 NC_022525.1 1780282 1780872 D catalyzes the formation of adenosylcobalamide from cobinamide and the formation of coenzyme B12 from cob(I)alamin; Derived by automated computational analysis using gene prediction method: Protein Homology.; cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase 1780282..1780872 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613505.1 CDS IA1_08535 NC_022525.1 1780959 1781834 R catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridylate synthase B complement(1780959..1781834) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613506.1 CDS IA1_08540 NC_022525.1 1781935 1782555 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1781935..1782555) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613507.1 CDS IA1_08545 NC_022525.1 1782563 1783444 R Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine tRNA ribosyltransferase complement(1782563..1783444) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613508.1 CDS IA1_08550 NC_022525.1 1783705 1785267 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; anthranilate synthase subunit I 1783705..1785267 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613509.1 CDS IA1_08555 NC_022525.1 1785267 1786862 D bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; anthranilate phosphoribosyltransferase 1785267..1786862 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613510.1 CDS IA1_08560 NC_022525.1 1786866 1788224 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylanthranilate isomerase 1786866..1788224 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613511.1 CDS IA1_08565 NC_022525.1 1788234 1789427 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan synthase subunit beta 1788234..1789427 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613512.1 CDS IA1_08570 NC_022525.1 1789427 1790233 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan synthase subunit alpha 1789427..1790233 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613513.1 CDS IA1_08575 NC_022525.1 1790712 1790894 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1790712..1790894 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613514.1 CDS IA1_08580 NC_022525.1 1790984 1791487 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1790984..1791487 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613515.1 CDS IA1_08585 NC_022525.1 1791561 1792067 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1791561..1792067 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613516.1 CDS IA1_08590 NC_022525.1 1792087 1792965 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Mn-containing catalase 1792087..1792965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613517.1 CDS IA1_08595 NC_022525.1 1793047 1793685 R receptor for colicin S4; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein W complement(1793047..1793685) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613518.1 CDS IA1_08600 NC_022525.1 1794023 1794427 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1794023..1794427 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613519.1 CDS IA1_08605 NC_022525.1 1794453 1795196 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1794453..1795196 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613520.1 CDS IA1_08610 NC_022525.1 1795253 1795792 D Involved in cell division; probably involved in intracellular septation; Derived by automated computational analysis using gene prediction method: Protein Homology.; intracellular septation protein A 1795253..1795792 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613521.1 CDS IA1_08615 NC_022525.1 1795953 1796354 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase 1795953..1796354 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613522.1 CDS IA1_08620 NC_022525.1 1796413 1797144 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell envelope protein TonB complement(1796413..1797144) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613523.1 CDS IA1_08625 NC_022525.1 1797359 1797655 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1797359..1797655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613524.1 CDS IA1_08630 NC_022525.1 1797699 1797836 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1797699..1797836) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613525.1 CDS cls NC_022525.1 1798015 1799475 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); Derived by automated computational analysis using gene prediction method: Protein Homology.; cardiolipin synthetase 1798015..1799475 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613526.1 CDS IA1_08640 NC_022525.1 1799509 1799838 D highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dsDNA-mimic protein 1799509..1799838 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613527.1 CDS IA1_08645 NC_022525.1 1799886 1800722 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(1799886..1800722) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613528.1 CDS IA1_08650 NC_022525.1 1800770 1801774 R with OppABCD is involved in the transport of oligopeptides; OppF and OppD are ATP-binding proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein complement(1800770..1801774) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613529.1 CDS oppD NC_022525.1 1801771 1802778 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; peptide ABC transporter ATP-binding protein complement(1801771..1802778) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613530.1 CDS IA1_08660 NC_022525.1 1802790 1803698 R with OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(1802790..1803698) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613531.1 CDS oppB NC_022525.1 1803713 1804633 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(1803713..1804633) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613532.1 CDS IA1_08670 NC_022525.1 1804755 1806386 R is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein complement(1804755..1806386) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613533.1 CDS IA1_08675 NC_022525.1 1807150 1807797 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1807150..1807797) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613534.1 CDS IA1_08680 NC_022525.1 1808274 1810952 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acetaldehyde dehydrogenase 1808274..1810952 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613535.1 CDS IA1_08685 NC_022525.1 1811149 1811766 R catalyzes the formation of thymidine 5'-phosphate from thymidine; Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidine kinase complement(1811149..1811766) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613536.1 CDS IA1_08690 NC_022525.1 1812429 1812842 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 1812429..1812842 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613537.1 CDS IA1_08695 NC_022525.1 1812974 1813882 R together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UTP--glucose-1-phosphate uridylyltransferase subunit GalU complement(1812974..1813882) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613538.1 CDS IA1_08700 NC_022525.1 1814085 1815098 R Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator complement(1814085..1815098) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613539.1 CDS IA1_08705 NC_022525.1 1815189 1816085 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1815189..1816085) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613540.1 CDS IA1_08710 NC_022525.1 1816304 1816663 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1816304..1816663 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613541.1 CDS IA1_08715 NC_022525.1 1816714 1817556 D Derived by automated computational analysis using gene prediction method: Protein Homology.; formyltetrahydrofolate deformylase 1816714..1817556 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613542.1 CDS IA1_08730 NC_022525.1 1818365 1819894 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1818365..1819894) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613543.1 CDS IA1_08735 NC_022525.1 1819930 1820094 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1819930..1820094 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613544.1 CDS narI NC_022525.1 1820136 1820813 R with NarGJH catalyzes the reduction of nitrate; the gamma subunit localizes NarGHI to the membrane; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit gamma complement(1820136..1820813) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613545.1 CDS IA1_08745 NC_022525.1 1820813 1821523 R delta subunit of nitrate reductase 1; chaperone for the insertion of the molybdenum cofactor and assembly of nitrate reductase 1; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase molybdenum cofactor assembly chaperone NarJ complement(1820813..1821523) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613546.1 CDS narH NC_022525.1 1821520 1823055 R with NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit beta complement(1821520..1823055) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613547.1 CDS narZ NC_022525.1 1823052 1826795 R with NarYV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit alpha complement(1823052..1826795) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613548.1 CDS IA1_08760 NC_022525.1 1827184 1828581 R involved in the transport of nitrate and nitrite; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate transporter complement(1827184..1828581) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613549.1 CDS IA1_08765 NC_022525.1 1828922 1830718 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate/nitrite sensor protein NarX 1828922..1830718 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613550.1 CDS IA1_08770 NC_022525.1 1830711 1831361 D two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1830711..1831361 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613551.1 CDS IA1_08775 NC_022525.1 1831362 1832891 R Derived by automated computational analysis using gene prediction method: Protein Homology.; invasin complement(1831362..1832891) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613552.1 CDS IA1_08780 NC_022525.1 1832963 1833316 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1832963..1833316 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613553.1 CDS chaB NC_022525.1 1833396 1833653 R in Escherichia coli this protein putatively regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transport regulator complement(1833396..1833653) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613554.1 CDS IA1_08790 NC_022525.1 1833893 1834993 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 1833893..1834993 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613555.1 CDS IA1_08795 NC_022525.1 1835047 1835901 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1835047..1835901) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613556.1 CDS IA1_08800 NC_022525.1 1835939 1836748 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1835939..1836748) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613557.1 CDS IA1_08805 NC_022525.1 1836752 1837141 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1836752..1837141) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613558.1 CDS IA1_08810 NC_022525.1 1837138 1837971 R HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; Derived by automated computational analysis using gene prediction method: Protein Homology.; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(1837138..1837971) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613559.1 CDS prfA NC_022525.1 1837971 1839053 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 1 complement(1837971..1839053) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613560.1 CDS hemA NC_022525.1 1839094 1840350 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glutamyl-tRNA reductase complement(1839094..1840350) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613561.1 CDS lolB NC_022525.1 1840664 1841287 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein LolB 1840664..1841287 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613562.1 CDS IA1_08830 NC_022525.1 1841284 1842135 D Derived by automated computational analysis using gene prediction method: Protein Homology.; kinase 1841284..1842135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613563.1 CDS IA1_08835 NC_022525.1 1842383 1843348 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose-phosphate pyrophosphokinase 1842383..1843348 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613564.1 CDS IA1_08840 NC_022525.1 1843473 1845158 D role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1843473..1845158 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613565.1 CDS IA1_08845 NC_022525.1 1845203 1845481 R YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1845203..1845481) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613566.1 CDS IA1_08850 NC_022525.1 1845757 1846341 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-tRNA hydrolase 1845757..1846341 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613567.1 CDS ychF NC_022525.1 1846458 1847549 D EngD; translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein YchF 1846458..1847549 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613568.1 CDS IA1_08860 NC_022525.1 1847708 1848973 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1847708..1848973) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613569.1 CDS IA1_08865 NC_022525.1 1849468 1850586 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1849468..1850586 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613570.1 CDS IA1_08870 NC_022525.1 1850583 1852376 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1850583..1852376 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613571.1 CDS IA1_08875 NC_022525.1 1852395 1853126 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1 b-type cytochrome subunit 1852395..1853126 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613572.1 CDS IA1_08880 NC_022525.1 1853123 1853719 D HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1 maturation protease 1853123..1853719 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613573.1 CDS IA1_08885 NC_022525.1 1853709 1854113 D involved in processing hydrogenase proteins HyaA and HyaB; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase-1 operon protein HyaE 1853709..1854113 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613574.1 CDS IA1_08890 NC_022525.1 1854110 1854958 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase-1 operon protein HyaF 1854110..1854958 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613575.1 CDS IA1_08895 NC_022525.1 1855033 1856577 D part of the aerobic respiratory chain; catalyzes the ubiquinol to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit I 1855033..1856577 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613576.1 CDS IA1_08900 NC_022525.1 1856589 1857725 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit II 1856589..1857725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613577.1 CDS IA1_08905 NC_022525.1 1857738 1857827 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1857738..1857827 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613578.1 CDS IA1_08910 NC_022525.1 1858171 1859496 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate dehydrogenase 1858171..1859496 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613579.1 CDS treA NC_022525.1 1859710 1861422 D periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalase 1859710..1861422 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613580.1 CDS IA1_08920 NC_022525.1 1861485 1861739 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1861485..1861739) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613581.1 CDS IA1_08925 NC_022525.1 1861908 1862642 D Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar brake protein YcgR 1861908..1862642 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613582.1 CDS emtA NC_022525.1 1862656 1863267 R catalyzes the cleavage of 1-4 beta-glycoside linkaged between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic murein endotransglycosylase E complement(1862656..1863267) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613583.1 CDS ldcA NC_022525.1 1863438 1864352 D catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L,D-carboxypeptidase A 1863438..1864352 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613584.1 CDS cvrA NC_022525.1 1864449 1866182 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium:proton antiporter 1864449..1866182 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613585.1 CDS IA1_08945 NC_022525.1 1866245 1867315 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine racemase complement(1866245..1867315) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613586.1 CDS IA1_08950 NC_022525.1 1867329 1868627 R catalyzes the oxidative deamination of D-amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-amino acid dehydrogenase small subunit complement(1867329..1868627) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613587.1 CDS IA1_08955 NC_022525.1 1868775 1868885 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1868775..1868885) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613588.1 CDS IA1_08960 NC_022525.1 1868950 1870482 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; SpoVR family protein 1868950..1870482 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613589.1 CDS IA1_08965 NC_022525.1 1870529 1871248 R Multifunctional regulator of fatty acid metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; fatty acid metabolism regulator complement(1870529..1871248) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613590.1 CDS nhaB NC_022525.1 1871468 1873012 D involved in regulation of intracellular pH under alkaline conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 1871468..1873012 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613591.1 CDS IA1_08975 NC_022525.1 1873154 1873684 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; disulfide bond formation protein DsbB 1873154..1873684 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613592.1 CDS IA1_08980 NC_022525.1 1873793 1874134 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tellurite resistance protein B 1873793..1874134 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613593.1 CDS IA1_08985 NC_022525.1 1874206 1874379 R Derived by automated computational analysis using gene prediction method: Protein Homology.; gns complement(1874206..1874379) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613594.1 CDS IA1_08990 NC_022525.1 1874752 1874850 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1874752..1874850) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613595.1 CDS IA1_08995 NC_022525.1 1875060 1875521 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1875060..1875521) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613596.1 CDS IA1_09000 NC_022525.1 1875599 1876276 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1875599..1876276) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613597.1 CDS IA1_09005 NC_022525.1 1876308 1876640 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1876308..1876640) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613598.1 CDS minC NC_022525.1 1876727 1877434 D blocks the formation of polar Z-ring septums; Derived by automated computational analysis using gene prediction method: Protein Homology.; septum formation inhibitor 1876727..1877434 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613599.1 CDS IA1_09015 NC_022525.1 1877458 1878270 D ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division inhibitor MinD 1877458..1878270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613600.1 CDS minE NC_022525.1 1878274 1878540 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division topological specificity factor MinE 1878274..1878540 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613601.1 CDS IA1_09025 NC_022525.1 1878662 1879789 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease D complement(1878662..1879789) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613602.1 CDS IA1_09030 NC_022525.1 1879862 1881580 R Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.; long-chain fatty acid--CoA ligase complement(1879862..1881580) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613603.1 CDS IA1_09035 NC_022525.1 1881752 1882333 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1881752..1882333) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613604.1 CDS IA1_09040 NC_022525.1 1882405 1883100 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1882405..1883100) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613605.1 CDS IA1_09045 NC_022525.1 1883158 1885068 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent helicase complement(1883158..1885068) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613606.1 CDS IA1_09050 NC_022525.1 1885200 1885544 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endoribonuclease L-PSP 1885200..1885544 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613607.1 CDS IA1_09055 NC_022525.1 1885550 1885729 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1885550..1885729) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613608.1 CDS pabB NC_022525.1 1885810 1887174 D para-aminobenzoate synthase component 1; catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and L-glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminodeoxychorismate synthase subunit I 1885810..1887174 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613609.1 CDS IA1_09065 NC_022525.1 1887178 1887756 D Derived by automated computational analysis using gene prediction method: Protein Homology.; NUDIX hydrolase 1887178..1887756 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613610.1 CDS IA1_09070 NC_022525.1 1888020 1889384 D catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-serine dehydratase 1888020..1889384 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613611.1 CDS IA1_09075 NC_022525.1 1889522 1891123 D Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate phosphodiesterase 1889522..1891123 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613612.1 CDS IA1_09080 NC_022525.1 1891145 1892704 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1891145..1892704) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613613.1 CDS IA1_09085 NC_022525.1 1893177 1894145 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; subunit IIA transfers a phosphoryl group to subunit IIB; subunit IIB transfers the phosphoryl group to the substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IIAB 1893177..1894145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613614.1 CDS IA1_09090 NC_022525.1 1894198 1894998 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IIC 1894198..1894998 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613615.1 CDS IA1_09095 NC_022525.1 1895002 1895862 D hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IID 1895002..1895862 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613616.1 CDS IA1_09100 NC_022525.1 1895920 1896378 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1895920..1896378 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613617.1 CDS IA1_09105 NC_022525.1 1896734 1897354 D membrane protein YebN; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1896734..1897354 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613618.1 CDS rrmA NC_022525.1 1897351 1898160 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(1897351..1898160) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613619.1 CDS IA1_09115 NC_022525.1 1898226 1899971 R penicillin-binding protein 3; transpeptidase involved in septal peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsI complement(1898226..1899971) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613620.1 CDS IA1_09120 NC_022525.1 1900191 1900400 R Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA chaperone/anti-terminator complement(1900191..1900400) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613621.1 CDS IA1_09125 NC_022525.1 1901205 1901438 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1901205..1901438) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613622.1 CDS IA1_09130 NC_022525.1 1901563 1901706 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PhoPQ regulatory protein complement(1901563..1901706) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613623.1 CDS IA1_09135 NC_022525.1 1901864 1902103 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1901864..1902103 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613624.1 CDS IA1_09140 NC_022525.1 1902199 1902300 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1902199..1902300) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613625.1 CDS IA1_09145 NC_022525.1 1902315 1903106 R regulates the genes involved in 2-keto-3-deoxy gluconate transport and catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1902315..1903106) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613626.1 CDS IA1_09150 NC_022525.1 1903282 1904655 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug MFS transporter 1903282..1904655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613627.1 CDS IA1_09155 NC_022525.1 1904703 1905584 R metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein HtpX complement(1904703..1905584) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613628.1 CDS IA1_09160 NC_022525.1 1905778 1907826 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxy-terminal protease complement(1905778..1907826) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613629.1 CDS IA1_09165 NC_022525.1 1907846 1908532 R affects solute and DNA transport through an unknown mechanism; Derived by automated computational analysis using gene prediction method: Protein Homology.; prop expression regulator complement(1907846..1908532) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613630.1 CDS IA1_09170 NC_022525.1 1908630 1909127 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Free methionine-R-sulfoxide reductase complement(1908630..1909127) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613631.1 CDS IA1_09175 NC_022525.1 1909256 1910539 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1909256..1910539 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613632.1 CDS IA1_09180 NC_022525.1 1910502 1913141 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1910502..1913141 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613633.1 CDS yebU NC_022525.1 1913117 1914658 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; rRNA methyltransferase 1913117..1914658 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613634.1 CDS IA1_09190 NC_022525.1 1914773 1915012 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1914773..1915012 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613635.1 CDS IA1_09195 NC_022525.1 1915123 1915314 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1915123..1915314 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613636.1 CDS pphA NC_022525.1 1915333 1915983 R Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine protein phosphatase complement(1915333..1915983) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613637.1 CDS IA1_09205 NC_022525.1 1916207 1916371 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1916207..1916371) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613638.1 CDS IA1_09210 NC_022525.1 1916656 1917378 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1916656..1917378) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613639.1 CDS IA1_09215 NC_022525.1 1918062 1918457 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1918062..1918457 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613640.1 CDS IA1_09220 NC_022525.1 1918787 1919263 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1918787..1919263 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613641.1 CDS IA1_09225 NC_022525.1 1919636 1920055 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; blasticidin S-acetyltransferase complement(1919636..1920055) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613642.1 CDS IA1_09230 NC_022525.1 1920601 1920747 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1920601..1920747 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613643.1 CDS IA1_09235 NC_022525.1 1921337 1921483 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(1921337..1921483) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613644.1 CDS IA1_09240 NC_022525.1 1922503 1922832 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 1922503..1922832 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613645.1 CDS IA1_09245 NC_022525.1 1923098 1923316 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1923098..1923316) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613646.1 CDS IA1_09250 NC_022525.1 1923916 1924830 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; drug/metabolite transporter DMT permease 1923916..1924830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613647.1 CDS IA1_09255 NC_022525.1 1924963 1925121 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1924963..1925121 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613648.1 CDS IA1_09260 NC_022525.1 1925131 1925745 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; disulfide bond formation protein 1925131..1925745 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613649.1 CDS IA1_09265 NC_022525.1 1926893 1927018 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arsenical pump membrane protein complement(1926893..1927018) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613650.1 CDS IA1_09280 NC_022525.1 1928919 1929182 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA breaking-rejoining protein complement(1928919..1929182) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613651.1 CDS IA1_09285 NC_022525.1 1929490 1929657 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lytic enzyme 1929490..1929657 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613652.1 CDS IA1_09290 NC_022525.1 1929914 1930447 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1929914..1930447) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613653.1 CDS IA1_09300 NC_022525.1 1930762 1931868 D Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VIII 1930762..1931868 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613654.1 CDS IA1_09305 NC_022525.1 1931865 1932944 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 1931865..1932944 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613655.1 CDS IA1_09310 NC_022525.1 1933327 1933680 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1933327..1933680) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613656.1 CDS IA1_09315 NC_022525.1 1933697 1934572 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1933697..1934572) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613657.1 CDS IA1_09320 NC_022525.1 1934573 1934947 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1934573..1934947) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613658.1 CDS IA1_09325 NC_022525.1 1935085 1935315 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit theta 1935085..1935315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613659.1 CDS IA1_09330 NC_022525.1 1935423 1936079 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon-nitrogen family hydrolase 1935423..1936079 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613660.1 CDS IA1_09335 NC_022525.1 1936103 1936801 D 3'-5' exonuclease activity on single or double-strand DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease X 1936103..1936801 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613661.1 CDS IA1_09340 NC_022525.1 1936838 1938889 R PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; protease complement(1936838..1938889) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613662.1 CDS IA1_09345 NC_022525.1 1939102 1939761 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1939102..1939761) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613663.1 CDS IA1_09350 NC_022525.1 1939855 1940208 R secreted protein; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1939855..1940208) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613664.1 CDS IA1_09355 NC_022525.1 1940276 1940566 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA damage-inducible protein YebG complement(1940276..1940566) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613665.1 CDS IA1_09360 NC_022525.1 1940697 1941875 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylglycinamide formyltransferase 1940697..1941875 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613666.1 CDS IA1_09365 NC_022525.1 1941875 1941970 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1941875..1941970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613667.1 CDS IA1_09370 NC_022525.1 1941975 1942616 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ketohydroxyglutarate aldolase complement(1941975..1942616) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613668.1 CDS IA1_09375 NC_022525.1 1942654 1944465 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphogluconate dehydratase complement(1942654..1944465) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613669.1 CDS IA1_09380 NC_022525.1 1944700 1946175 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-6-phosphate 1-dehydrogenase complement(1944700..1946175) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613670.1 CDS IA1_09385 NC_022525.1 1946517 1947386 D Represses the expression of the zwf, eda, glp and gap; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1946517..1947386 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613671.1 CDS IA1_09390 NC_022525.1 1947510 1948952 D catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate kinase 1947510..1948952 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613672.1 CDS IA1_09395 NC_022525.1 1949025 1949996 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(1949025..1949996) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613673.1 CDS IA1_09400 NC_022525.1 1950121 1951440 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase complement(1950121..1951440) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613674.1 CDS znuA NC_022525.1 1951456 1952400 R involved in transport of zinc(II) with ZnuA and C; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc ABC transporter substrate-binding protein complement(1951456..1952400) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613675.1 CDS znuC NC_022525.1 1952479 1953234 D involved in transport of zinc(II) with ZnuA and C; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; zinc transporter 1952479..1953234 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613676.1 CDS znuB NC_022525.1 1953231 1954016 D involved in transport of zinc(II) with ZnuA and C; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter 1953231..1954016 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613677.1 CDS ruvB NC_022525.1 1954095 1955105 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction DNA helicase RuvB complement(1954095..1955105) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613678.1 CDS ruvA NC_022525.1 1955114 1955725 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction DNA helicase RuvA complement(1955114..1955725) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613679.1 CDS IA1_09430 NC_022525.1 1956058 1957041 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1956058..1957041 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613680.1 CDS IA1_09435 NC_022525.1 1957709 1958308 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1957709..1958308 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613681.1 CDS ruvC NC_022525.1 1958310 1958831 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction resolvase complement(1958310..1958831) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613682.1 CDS IA1_09445 NC_022525.1 1958868 1959608 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1958868..1959608) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613683.1 CDS nudB NC_022525.1 1959638 1960090 R catalyzes the formation of dihydroneopterin phosphate from dihydroneopterin triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroneopterin triphosphate pyrophosphatase complement(1959638..1960090) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613684.1 CDS IA1_09455 NC_022525.1 1960193 1961965 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartyl-tRNA synthetase complement(1960193..1961965) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613685.1 CDS IA1_09460 NC_022525.1 1962290 1962856 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 1962290..1962856 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613686.1 CDS IA1_09465 NC_022525.1 1962853 1963671 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1962853..1963671 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613687.1 CDS IA1_09470 NC_022525.1 1963724 1964119 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1963724..1964119 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613688.1 CDS IA1_09475 NC_022525.1 1964160 1964903 D catalyzes the conversion of 5-methoxyuridine to uridine-5-oxyacetic acid in tRNA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; rRNA cytosine-C5-methyltransferase 1964160..1964903 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613689.1 CDS IA1_09480 NC_022525.1 1964900 1965871 D catalyzes the conversion of 5-hydroxyuridine to 5-methoxyuridine in tRNA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tRNA methyltransferase 1964900..1965871 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613690.1 CDS IA1_09485 NC_022525.1 1966107 1966853 R Derived by automated computational analysis using gene prediction method: Protein Homology.; copper homeostasis protein CutC complement(1966107..1966853) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613691.1 CDS IA1_09490 NC_022525.1 1966873 1967442 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1966873..1967442) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613692.1 CDS IA1_09495 NC_022525.1 1967679 1969412 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arginyl-tRNA synthetase 1967679..1969412 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613693.1 CDS IA1_09500 NC_022525.1 1969601 1971472 D Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 2 1969601..1971472 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613694.1 CDS IA1_09505 NC_022525.1 1971526 1972665 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl hydrolase family 88 complement(1971526..1972665) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613695.1 CDS IA1_09510 NC_022525.1 1972902 1973294 R Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar protein flhE complement(1972902..1973294) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613696.1 CDS flhA NC_022525.1 1973294 1975372 R membrane protein involved in the flagellar export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FlhA complement(1973294..1975372) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613697.1 CDS flhB NC_022525.1 1975365 1976516 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FlhB complement(1975365..1976516) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613698.1 CDS IA1_09525 NC_022525.1 1976710 1977354 R cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheZ complement(1976710..1977354) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613699.1 CDS IA1_09530 NC_022525.1 1977365 1977754 R chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheY complement(1977365..1977754) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613700.1 CDS IA1_09535 NC_022525.1 1977772 1978821 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein complement(1977772..1978821) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613701.1 CDS IA1_09540 NC_022525.1 1978818 1979684 R methylates the MCP; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheR complement(1978818..1979684) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613702.1 CDS IA1_09545 NC_022525.1 1979838 1981499 R serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein complement(1979838..1981499) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613703.1 CDS IA1_09550 NC_022525.1 1981736 1982239 R Derived by automated computational analysis using gene prediction method: Protein Homology.; purine-binding chemotaxis protein complement(1981736..1982239) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613704.1 CDS IA1_09555 NC_022525.1 1982260 1984275 R Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheA complement(1982260..1984275) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613705.1 CDS motB NC_022525.1 1984280 1985209 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor protein MotB complement(1984280..1985209) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613706.1 CDS IA1_09565 NC_022525.1 1985206 1986093 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor protein MotA complement(1985206..1986093) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613707.1 CDS IA1_09570 NC_022525.1 1986219 1986803 R With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(1986219..1986803) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613708.1 CDS IA1_09575 NC_022525.1 1986800 1987141 R with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional activator FlhD complement(1986800..1987141) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613709.1 CDS IA1_09580 NC_022525.1 1987937 1988365 D ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein C 1987937..1988365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613710.1 CDS IA1_09585 NC_022525.1 1988383 1989804 R Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose-6-phosphate synthase complement(1988383..1989804) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613711.1 CDS IA1_09590 NC_022525.1 1989779 1990582 R Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose-phosphatase complement(1989779..1990582) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613712.1 CDS IA1_09595 NC_022525.1 1991098 1991655 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; thiamine biogenesis protein ThiJ complement(1991098..1991655) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613713.1 CDS IA1_09600 NC_022525.1 1991910 1992005 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1991910..1992005) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613714.1 CDS IA1_09605 NC_022525.1 1992206 1992709 D ferritin B; required for virulence in Salmonella; may be involved in repair of damaged Fe-S clusters; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferritin 1992206..1992709 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613715.1 CDS IA1_09610 NC_022525.1 1992888 1993526 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1992888..1993526) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613716.1 CDS IA1_09615 NC_022525.1 1993782 1994117 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1993782..1994117 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613717.1 CDS IA1_09620 NC_022525.1 1994357 1994854 D cytoplasmic iron storage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferritin 1994357..1994854 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613718.1 CDS IA1_09625 NC_022525.1 1994900 1995139 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1994900..1995139) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613719.1 CDS IA1_09630 NC_022525.1 1995309 1996577 D tyrosine specific permease; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine transporter TyrP 1995309..1996577 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613720.1 CDS IA1_09635 NC_022525.1 1996652 1997317 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1996652..1997317) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613721.1 CDS IA1_09645 NC_022525.1 1998094 1999527 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cell wall-associated hydrolase complement(1998094..1999527) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613722.1 CDS IA1_09665 NC_022525.1 2000779 2001327 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylglycerophosphate synthetase complement(2000779..2001327) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613723.1 CDS uvrC NC_022525.1 2001384 2003216 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit C complement(2001384..2003216) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613724.1 CDS sirA NC_022525.1 2003213 2003869 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator complement(2003213..2003869) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613725.1 CDS IA1_09680 NC_022525.1 2004181 2004336 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2004181..2004336 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613726.1 CDS IA1_09685 NC_022525.1 2004333 2004557 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2004333..2004557 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613727.1 CDS IA1_09690 NC_022525.1 2004624 2005346 R regulates genes involved in cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2004624..2005346) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613728.1 CDS glnQ NC_022525.1 2005579 2006331 R similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine ABC transporter ATP-binding protein complement(2005579..2006331) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613729.1 CDS IA1_09700 NC_022525.1 2006328 2006996 R Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease complement(2006328..2006996) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613730.1 CDS IA1_09705 NC_022525.1 2007017 2008003 R catalyzes the formation of pyruvate from D-cysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-cysteine desulfhydrase complement(2007017..2008003) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613731.1 CDS IA1_09710 NC_022525.1 2008157 2008957 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cystine transporter subunit complement(2008157..2008957) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613732.1 CDS IA1_09715 NC_022525.1 2009104 2009655 R expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliZ complement(2009104..2009655) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613733.1 CDS fliA NC_022525.1 2009714 2010433 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis sigma factor complement(2009714..2010433) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613734.1 CDS IA1_09725 NC_022525.1 2010630 2011835 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine-N-methylase complement(2010630..2011835) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613735.1 CDS IA1_09730 NC_022525.1 2011914 2013401 R structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellin complement(2011914..2013401) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613736.1 CDS fliD NC_022525.1 2013658 2015061 D involved in flagellin assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar capping protein 2013658..2015061 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613737.1 CDS fliS NC_022525.1 2015076 2015483 D flagellin specific chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliS 2015076..2015483 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613738.1 CDS IA1_09745 NC_022525.1 2015483 2015851 D Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliT 2015483..2015851 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613739.1 CDS IA1_09750 NC_022525.1 2015923 2017407 D converts 1,4-alpha-D-glucans to maltodextrin; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-amylase 2015923..2017407 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613740.1 CDS IA1_09755 NC_022525.1 2017447 2017860 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(2017447..2017860) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613741.1 CDS IA1_09760 NC_022525.1 2018046 2019251 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2018046..2019251 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613742.1 CDS IA1_09765 NC_022525.1 2019248 2019481 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2019248..2019481 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613743.1 CDS IA1_09770 NC_022525.1 2019779 2020132 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 50S ribosomal protein L1 2019779..2020132 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613744.1 CDS fliE NC_022525.1 2020253 2020567 R forms a junction between the M-ring and FlgB during flagella biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-basal body protein FliE complement(2020253..2020567) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613745.1 CDS fliF NC_022525.1 2020784 2022466 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar MS-ring protein 2020784..2022466 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613746.1 CDS fliG NC_022525.1 2022459 2023454 D One of three proteins involved in switching the direction of the flagellar rotation; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor switch protein FliG 2022459..2023454 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613747.1 CDS fliH NC_022525.1 2023447 2024154 D binds to and inhibits the function of flagella specific ATPase FliI; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar assembly protein H 2023447..2024154 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613748.1 CDS fliI NC_022525.1 2024154 2025524 D involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP synthase 2024154..2025524 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613749.1 CDS fliJ NC_022525.1 2025546 2025989 D rod/hook and filament chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis chaperone 2025546..2025989 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613750.1 CDS IA1_09805 NC_022525.1 2025986 2027209 D Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-length control protein 2025986..2027209 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613751.1 CDS IA1_09810 NC_022525.1 2027314 2027781 D Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body protein FliL 2027314..2027781 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613752.1 CDS fliM NC_022525.1 2027786 2028790 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor switch protein FliM 2027786..2028790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613753.1 CDS fliN NC_022525.1 2028787 2029200 D One of three proteins involved in switching the direction of the flagellar rotation; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor switch protein FliN 2028787..2029200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613754.1 CDS IA1_09825 NC_022525.1 2029200 2029577 D with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliO 2029200..2029577 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613755.1 CDS fliP NC_022525.1 2029577 2030314 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliP 2029577..2030314 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613756.1 CDS fliQ NC_022525.1 2030324 2030593 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliQ 2030324..2030593 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613757.1 CDS fliR NC_022525.1 2030602 2031396 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliR 2030602..2031396 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613758.1 CDS rcsA NC_022525.1 2031678 2032301 D with RcsB is a positive regulator of capsular polysaccharide synthesis genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid capsular biosynthesis activation protein A 2031678..2032301 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613759.1 CDS IA1_09850 NC_022525.1 2032340 2032534 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2032340..2032534) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613760.1 CDS IA1_09855 NC_022525.1 2032663 2032890 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2032663..2032890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613761.1 CDS IA1_09860 NC_022525.1 2033200 2034015 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannosyl-3-phosphoglycerate phosphatase 2033200..2034015 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613762.1 CDS IA1_09865 NC_022525.1 2033994 2035706 R catalyzes the formation of cyclic di-3',5'-guanylate from guanosine triphosphate; involved in the regulation of cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase complement(2033994..2035706) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613763.1 CDS IA1_09870 NC_022525.1 2035871 2036056 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2035871..2036056) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613764.1 CDS IA1_09875 NC_022525.1 2036133 2037044 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2036133..2037044) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613765.1 CDS IA1_09880 NC_022525.1 2037220 2038140 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2037220..2038140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613766.1 CDS IA1_09885 NC_022525.1 2038129 2038599 R DNA mismatch endonuclease; recognizes and repairs T:G mismatches; Derived by automated computational analysis using gene prediction method: Protein Homology.; very short patch repair endonuclease complement(2038129..2038599) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613767.1 CDS IA1_09890 NC_022525.1 2038580 2040010 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-cytosine methyltransferase complement(2038580..2040010) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613768.1 CDS IA1_09895 NC_022525.1 2040084 2040779 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase complement(2040084..2040779) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613769.1 CDS IA1_09900 NC_022525.1 2040859 2041170 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2040859..2041170) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613770.1 CDS IA1_09905 NC_022525.1 2041820 2043031 D allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin protein C 2041820..2043031 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613771.1 CDS IA1_09910 NC_022525.1 2043490 2043702 R Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA chaperone/anti-terminator complement(2043490..2043702) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613772.1 CDS IA1_09915 NC_022525.1 2044157 2045425 R binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase V subunit UmuC complement(2044157..2045425) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613773.1 CDS IA1_09920 NC_022525.1 2045428 2045847 R Derived by automated computational analysis using gene prediction method: Protein Homology.; umuDC operon protein-like protein complement(2045428..2045847) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613774.1 CDS IA1_09930 NC_022525.1 2046616 2047413 D Mlc anti-repressor; regulates ptsG by binding and inactivating Mlc; Derived by automated computational analysis using gene prediction method: Protein Homology.; DgsA anti-repressor MtfA 2046616..2047413 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613775.1 CDS IA1_09940 NC_022525.1 2047785 2048075 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; P4-type integrase 2047785..2048075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613776.1 CDS IA1_09945 NC_022525.1 2048082 2048186 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2048082..2048186) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613777.1 CDS IA1_09955 NC_022525.1 2048722 2049195 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase 2048722..2049195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613778.1 CDS IA1_09960 NC_022525.1 2049669 2050367 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 2049669..2050367 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613779.1 CDS IA1_09965 NC_022525.1 2050710 2052878 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2050710..2052878 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613780.1 CDS IA1_09970 NC_022525.1 2052935 2054665 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2052935..2054665 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613781.1 CDS IA1_09975 NC_022525.1 2054696 2054830 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2054696..2054830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613782.1 CDS IA1_09980 NC_022525.1 2054875 2055048 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2054875..2055048 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613783.1 CDS IA1_09985 NC_022525.1 2055367 2055456 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2055367..2055456 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613784.1 CDS IA1_09990 NC_022525.1 2055570 2057024 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP nucleosidase complement(2055570..2057024) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613785.1 CDS IA1_09995 NC_022525.1 2057220 2057546 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl carrier protein complement(2057220..2057546) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613786.1 CDS IA1_10000 NC_022525.1 2057540 2057926 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(2057540..2057926) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613787.1 CDS IA1_10005 NC_022525.1 2058119 2058418 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2058119..2058418 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613788.1 CDS IA1_10015 NC_022525.1 2058639 2060156 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MATE family multidrug exporter complement(2058639..2060156) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613789.1 CDS IA1_10025 NC_022525.1 2060496 2060798 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 2060496..2060798 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613790.1 CDS IA1_10030 NC_022525.1 2060817 2061866 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arsenic transporter complement(2060817..2061866) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613791.1 CDS IA1_10035 NC_022525.1 2061884 2063644 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arsenic transporter ATPase complement(2061884..2063644) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613792.1 CDS IA1_10040 NC_022525.1 2063688 2064050 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arsenic resistance operon repressor complement(2063688..2064050) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613793.1 CDS IA1_10045 NC_022525.1 2064084 2064560 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ArsC family transcriptional regulator complement(2064084..2064560) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613794.1 CDS IA1_10050 NC_022525.1 2064557 2064931 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ArsR family transcriptional regulator complement(2064557..2064931) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613795.1 CDS IA1_10055 NC_022525.1 2065679 2066608 R catalyzes th removal of D-alanine and attachment of the murein lipoprotein to the peptidoglycan tetrapeptide chain; Derived by automated computational analysis using gene prediction method: Protein Homology.; L,D-transpeptidase complement(2065679..2066608) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613796.1 CDS cobT NC_022525.1 2066686 2067756 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2066686..2067756) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613797.1 CDS cobS NC_022525.1 2067783 2068526 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalamin synthase complement(2067783..2068526) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613798.1 CDS cobU NC_022525.1 2068523 2069068 R catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosylcobinamide kinase complement(2068523..2069068) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613799.1 CDS IA1_10075 NC_022525.1 2069065 2070585 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cobyric acid synthase complement(2069065..2070585) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613800.1 CDS cbiO NC_022525.1 2070582 2071397 R with CbiNQ forms the ABC transporter for cobalt import; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt ABC transporter ATP-binding protein complement(2070582..2071397) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613801.1 CDS IA1_10085 NC_022525.1 2071406 2072083 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt transporter CbiQ complement(2071406..2072083) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613802.1 CDS IA1_10090 NC_022525.1 2072070 2072351 R periplasmic cobalt binding component of the cobalt transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt transporter CbiN complement(2072070..2072351) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613803.1 CDS IA1_10095 NC_022525.1 2072353 2073090 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cobalt transporter CbiM complement(2072353..2073090) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613804.1 CDS IA1_10100 NC_022525.1 2073087 2073800 R catalyzes the formation of precorrin-3A from precorrin-2; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt-precorrin-2 C(20)-methyltransferase complement(2073087..2073800) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613805.1 CDS IA1_10105 NC_022525.1 2073797 2074591 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sirohydrochlorin cobaltochelatase complement(2073797..2074591) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613806.1 CDS IA1_10110 NC_022525.1 2074594 2075385 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt-precorrin-6x reductase complement(2074594..2075385) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613807.1 CDS cbiH NC_022525.1 2075382 2076107 R catalyzes the formation of cobalt-precorrin-4 from cobalt-precorrin-3B; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt-precorrin-3B C(17)-methyltransferase complement(2075382..2076107) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613808.1 CDS IA1_10120 NC_022525.1 2076107 2077162 R catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalamin biosynthesis protein CbiG complement(2076107..2077162) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613809.1 CDS cbiF NC_022525.1 2077143 2077916 R catalyzes the formation of cobalt-precorrin-5 from cobalt-precorrin-4; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt-precorrin-4 C(11)-methyltransferase complement(2077143..2077916) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613810.1 CDS IA1_10130 NC_022525.1 2077900 2078478 R catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt-precorrin-6Y C(15)-methyltransferase complement(2077900..2078478) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613811.1 CDS IA1_10135 NC_022525.1 2078468 2079073 R catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt-precorrin-6Y C(5)-methyltransferase complement(2078468..2079073) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613812.1 CDS cbiD NC_022525.1 2079067 2080206 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt-precorrin-6A synthase complement(2079067..2080206) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613813.1 CDS cbiC NC_022525.1 2080206 2080838 R catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; Derived by automated computational analysis using gene prediction method: Protein Homology.; precorrin-8X methylmutase complement(2080206..2080838) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613814.1 CDS IA1_10150 NC_022525.1 2080849 2081808 R CobD; CbiB in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalamin biosynthesis protein complement(2080849..2081808) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613815.1 CDS IA1_10155 NC_022525.1 2081805 2083184 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cobyrinic acid a,c-diamide synthase complement(2081805..2083184) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613816.1 CDS IA1_10160 NC_022525.1 2083782 2084693 R Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein complement(2083782..2084693) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613817.1 CDS IA1_10165 NC_022525.1 2084910 2085704 R involved in the transport of glycerol into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol uptake facilitator GlpF complement(2084910..2085704) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613818.1 CDS IA1_10170 NC_022525.1 2086229 2086513 D ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein 2086229..2086513 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613819.1 CDS IA1_10175 NC_022525.1 2086510 2087322 D carboxysome shell protein; may be involved in the formation of the polyhedral organelles involved in propanediol degradation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; propanediol utilization protein PduB 2086510..2087322 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613820.1 CDS pduC NC_022525.1 2087341 2089005 D with pduED catalyzes the formation of propionaldehyde from 1,2-propanediol; Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol dehydratase large subunit 2087341..2089005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613821.1 CDS pduD NC_022525.1 2089016 2089690 D with PduCE catalyzes the formation of propionaldehyde from 1,2-propanediol; Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol dehydratase medium subunit 2089016..2089690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613822.1 CDS pduE NC_022525.1 2089705 2090226 D with pduCD catalyzes the formation of propionaldehyde from 1,2-propanediol; Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol dehydratase small subunit 2089705..2090226 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613823.1 CDS IA1_10195 NC_022525.1 2090242 2092074 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol dehydratase 2090242..2092074 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613824.1 CDS IA1_10200 NC_022525.1 2092064 2092414 D Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol dehydratase reactivation protein 2092064..2092414 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613825.1 CDS IA1_10205 NC_022525.1 2092434 2092709 D ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein 2092434..2092709 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613826.1 CDS IA1_10210 NC_022525.1 2092734 2093195 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; microcompartments protein 2092734..2093195 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613827.1 CDS IA1_10215 NC_022525.1 2093195 2093827 D catalyzes the formation of propionyl phosphate from propionyl-CoA in propanediol degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol utilization phosphotransacylase 2093195..2093827 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613828.1 CDS IA1_10220 NC_022525.1 2093824 2094315 D Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol utilization protein PduM 2093824..2094315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613829.1 CDS IA1_10225 NC_022525.1 2094319 2094594 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 2094319..2094594 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613830.1 CDS IA1_10230 NC_022525.1 2094604 2095614 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP/cobalamin adenosyltransferase 2094604..2095614 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613831.1 CDS IA1_10235 NC_022525.1 2095611 2097005 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase 2095611..2097005 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613832.1 CDS IA1_10240 NC_022525.1 2097017 2098129 D Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol utilization propanol dehydrogenase pduQ 2097017..2098129 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613833.1 CDS IA1_10245 NC_022525.1 2098126 2099481 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; polyhedral body protein 2098126..2099481 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613834.1 CDS IA1_10250 NC_022525.1 2099484 2100038 D Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol utilization: polyhedral bodies pduT 2099484..2100038 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613835.1 CDS IA1_10255 NC_022525.1 2100038 2100388 D Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol utilization protein PduU 2100038..2100388 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613836.1 CDS IA1_10260 NC_022525.1 2100393 2100845 D Derived by automated computational analysis using gene prediction method: Protein Homology.; propanediol utilization protein pduV 2100393..2100845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613837.1 CDS IA1_10265 NC_022525.1 2100830 2102044 D Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetate kinase 2100830..2102044 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613838.1 CDS IA1_10270 NC_022525.1 2102102 2103004 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GHMP kinase 2102102..2103004 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613839.1 CDS IA1_10275 NC_022525.1 2103038 2103373 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2103038..2103373) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613840.1 CDS IA1_10280 NC_022525.1 2103618 2104676 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2103618..2104676) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613841.1 CDS IA1_10285 NC_022525.1 2104795 2105262 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase inhibitor complement(2104795..2105262) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613842.1 CDS IA1_10290 NC_022525.1 2105415 2106587 R removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase complement(2105415..2106587) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613843.1 CDS IA1_10295 NC_022525.1 2106711 2107475 R Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate reductase cytochrome B complement(2106711..2107475) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613844.1 CDS IA1_10300 NC_022525.1 2107472 2108050 R Derived by automated computational analysis using gene prediction method: Protein Homology.; polysulfide reductase subunit B complement(2107472..2108050) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613845.1 CDS IA1_10305 NC_022525.1 2108065 2110341 R catalyzes the production of hydrogen sulfide from thiosulfate; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate reductase complement(2108065..2110341) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613846.1 CDS IA1_10310 NC_022525.1 2110960 2113308 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; E3 ubiquitin-protein ligase SopA 2110960..2113308 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613847.1 CDS sbcB NC_022525.1 2113675 2115105 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease I 2113675..2115105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613848.1 CDS IA1_10320 NC_022525.1 2115241 2116599 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; putrescine/spermidine ABC transporter complement(2115241..2116599) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613849.1 CDS IA1_10325 NC_022525.1 2116885 2117799 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(2116885..2117799) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613850.1 CDS IA1_10330 NC_022525.1 2117845 2118669 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2117845..2118669) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613851.1 CDS hisG NC_022525.1 2119028 2119927 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP phosphoribosyltransferase 2119028..2119927 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613852.1 CDS hisD NC_022525.1 2120030 2121334 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional histidinal dehydrogenase/ histidinol dehydrogenase 2120030..2121334 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613853.1 CDS IA1_10345 NC_022525.1 2121331 2122410 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidinol-phosphate aminotransferase 2121331..2122410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613854.1 CDS IA1_10350 NC_022525.1 2122407 2123474 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazoleglycerol-phosphate dehydratase 2122407..2123474 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613855.1 CDS hisH NC_022525.1 2123474 2124064 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazole glycerol phosphate synthase 2123474..2124064 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613856.1 CDS IA1_10360 NC_022525.1 2124064 2124801 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2124064..2124801 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613857.1 CDS IA1_10365 NC_022525.1 2124783 2125559 D Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazole glycerol phosphate synthase 2124783..2125559 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613858.1 CDS IA1_10370 NC_022525.1 2125553 2126164 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosyl-AMP cyclohydrolase 2125553..2126164 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613859.1 CDS IA1_10375 NC_022525.1 2126245 2127228 R regulator of length of O-antigen component of lipopolysaccharide chains; Derived by automated computational analysis using gene prediction method: Protein Homology.; chain-length determining protein complement(2126245..2127228) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613860.1 CDS IA1_10380 NC_022525.1 2127371 2128537 R catalyzes the formation of UDP-glucuronate from UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-glucose 6-dehydrogenase complement(2127371..2128537) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613861.1 CDS IA1_10385 NC_022525.1 2128599 2128787 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2128599..2128787) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613862.1 CDS IA1_10390 NC_022525.1 2128775 2130181 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphogluconate dehydrogenase complement(2128775..2130181) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613863.1 CDS IA1_10395 NC_022525.1 2130318 2131844 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2130318..2131844) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613864.1 CDS IA1_10400 NC_022525.1 2132130 2133500 R capsular polysaccharide biosynthesis protein; catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphomannomutase complement(2132130..2133500) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613865.1 CDS cpsB NC_022525.1 2133515 2134933 R capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannose-1-phosphate guanyltransferase complement(2133515..2134933) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613866.1 CDS IA1_10410 NC_022525.1 2134930 2136129 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycosyl transferase family 1 complement(2134930..2136129) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613867.1 CDS IA1_10415 NC_022525.1 2136116 2137045 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycosyltransferase family 1 complement(2136116..2137045) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613868.1 CDS IA1_10420 NC_022525.1 2137107 2138108 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; WbaB protein complement(2137107..2138108) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613869.1 CDS IA1_10425 NC_022525.1 2138108 2139187 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; polymerase complement(2138108..2139187) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613870.1 CDS IA1_10430 NC_022525.1 2139572 2140465 R together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UTP--glucose-1-phosphate uridylyltransferase subunit GalU complement(2139572..2140465) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613871.1 CDS wcaM NC_022525.1 2140643 2142046 R WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis protein complement(2140643..2142046) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613872.1 CDS IA1_10440 NC_022525.1 2142057 2143277 R Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis glycosyltransferase WcaL complement(2142057..2143277) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613873.1 CDS IA1_10445 NC_022525.1 2143274 2144554 R Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis protein complement(2143274..2144554) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613874.1 CDS IA1_10450 NC_022525.1 2144576 2146054 R Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid exporter complement(2144576..2146054) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613875.1 CDS IA1_10455 NC_022525.1 2146156 2147550 R WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-glucose lipid carrier transferase complement(2146156..2147550) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613876.1 CDS IA1_10460 NC_022525.1 2147604 2148974 R capsular polysaccharide biosynthesis protein; catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphomannomutase complement(2147604..2148974) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613877.1 CDS cpsB NC_022525.1 2149085 2150527 R capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannose-1-phosphate guanyltransferase complement(2149085..2150527) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613878.1 CDS IA1_10470 NC_022525.1 2150524 2151747 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase complement(2150524..2151747) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613879.1 CDS IA1_10475 NC_022525.1 2151744 2152217 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2151744..2152217) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613880.1 CDS IA1_10480 NC_022525.1 2152220 2153185 R bifunctional GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase;catalyzes the formation of GDP-fucose from GDP-4-dehydro-6-deoxy-D-mannose; Derived by automated computational analysis using gene prediction method: Protein Homology.; GDP-fucose synthetase complement(2152220..2153185) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613881.1 CDS IA1_10485 NC_022525.1 2153188 2154309 R catalyzes the formation of GDP-4-dehydro-6-deoxy-D-mannose from GDP mannose; Derived by automated computational analysis using gene prediction method: Protein Homology.; GDP-mannose 4,6-dehydratase complement(2153188..2154309) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613882.1 CDS IA1_10490 NC_022525.1 2154333 2154887 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl transferase complement(2154333..2154887) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613883.1 CDS IA1_10495 NC_022525.1 2154903 2155649 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase complement(2154903..2155649) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613884.1 CDS wcaD NC_022525.1 2155662 2156876 R essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis protein complement(2155662..2156876) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613885.1 CDS IA1_10505 NC_022525.1 2156851 2158068 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase complement(2156851..2158068) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613886.1 CDS IA1_10510 NC_022525.1 2158065 2158553 R acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl transferase complement(2158065..2158553) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613887.1 CDS IA1_10515 NC_022525.1 2158556 2159398 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase complement(2158556..2159398) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613888.1 CDS IA1_10520 NC_022525.1 2159485 2161644 R Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine kinase complement(2159485..2161644) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613889.1 CDS IA1_10525 NC_022525.1 2161641 2162090 R Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-tyrosine phosphatase complement(2161641..2162090) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613890.1 CDS IA1_10530 NC_022525.1 2162096 2163235 R required for the translocation of capsular polysaccharide through the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; polysaccharide export protein Wza complement(2162096..2163235) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613891.1 CDS IA1_10535 NC_022525.1 2163910 2165490 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2163910..2165490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613892.1 CDS IA1_10540 NC_022525.1 2165576 2167432 R YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; Derived by automated computational analysis using gene prediction method: Protein Homology.; assembly protein complement(2165576..2167432) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613893.1 CDS IA1_10545 NC_022525.1 2167471 2168052 R Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxycytidine triphosphate deaminase complement(2167471..2168052) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613894.1 CDS IA1_10550 NC_022525.1 2168143 2168784 R Derived by automated computational analysis using gene prediction method: Protein Homology.; uridine/cytidine kinase complement(2168143..2168784) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613895.1 CDS IA1_10555 NC_022525.1 2169115 2172105 D Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase/phosphodiesterase 2169115..2172105 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613896.1 CDS IA1_10560 NC_022525.1 2172073 2172942 R inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 3-methyl-adenine DNA glycosylase complement(2172073..2172942) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613897.1 CDS IA1_10565 NC_022525.1 2173076 2174428 D Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone 2173076..2174428 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613898.1 CDS IA1_10570 NC_022525.1 2174869 2176110 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2174869..2176110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613899.1 CDS IA1_10575 NC_022525.1 2176110 2179232 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2176110..2179232 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613900.1 CDS IA1_10580 NC_022525.1 2179233 2182313 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2179233..2182313 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613901.1 CDS IA1_10585 NC_022525.1 2182310 2183722 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transporter 2182310..2183722 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613902.1 CDS IA1_10590 NC_022525.1 2183722 2185125 D Derived by automated computational analysis using gene prediction method: Protein Homology.; signal transduction histidine-protein kinase BaeS 2183722..2185125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613903.1 CDS IA1_10595 NC_022525.1 2185122 2185844 D response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2185122..2185844 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613904.1 CDS IA1_10600 NC_022525.1 2186113 2187315 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2186113..2187315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613905.1 CDS IA1_10605 NC_022525.1 2187315 2188031 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2187315..2188031 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613906.1 CDS IA1_10610 NC_022525.1 2188042 2190153 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2188042..2190153 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613907.1 CDS IA1_10615 NC_022525.1 2190158 2190877 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2190158..2190877 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613908.1 CDS IA1_10620 NC_022525.1 2191005 2191553 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2191005..2191553) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613909.1 CDS IA1_10625 NC_022525.1 2191890 2192117 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2191890..2192117) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613910.1 CDS IA1_10630 NC_022525.1 2192201 2192698 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2192201..2192698) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613911.1 CDS IA1_10635 NC_022525.1 2192898 2193275 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2192898..2193275) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613912.1 CDS IA1_10640 NC_022525.1 2193646 2194080 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2193646..2194080) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613913.1 CDS IA1_10645 NC_022525.1 2194228 2194452 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2194228..2194452) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613914.1 CDS IA1_10650 NC_022525.1 2194510 2194851 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2194510..2194851) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613915.1 CDS IA1_10655 NC_022525.1 2195126 2195248 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2195126..2195248) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613916.1 CDS IA1_10660 NC_022525.1 2195625 2195993 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2195625..2195993) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613917.1 CDS IA1_10665 NC_022525.1 2196005 2196607 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2196005..2196607) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613918.1 CDS IA1_10670 NC_022525.1 2196697 2197206 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2196697..2197206) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613919.1 CDS IA1_10675 NC_022525.1 2197832 2198275 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2197832..2198275) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613920.1 CDS IA1_10685 NC_022525.1 2198824 2199243 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2198824..2199243) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613921.1 CDS IA1_10690 NC_022525.1 2199898 2200515 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2199898..2200515) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613922.1 CDS IA1_10695 NC_022525.1 2200676 2202040 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 2200676..2202040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613923.1 CDS IA1_10700 NC_022525.1 2204114 2205013 D cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid kinase 2204114..2205013 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613924.1 CDS IA1_10705 NC_022525.1 2205066 2206118 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase complement(2205066..2206118) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613925.1 CDS IA1_10710 NC_022525.1 2206372 2207643 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside transporter 2206372..2207643 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613926.1 CDS IA1_10715 NC_022525.1 2207640 2208644 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2207640..2208644 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613927.1 CDS IA1_10720 NC_022525.1 2208641 2209606 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar kinase 2208641..2209606 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613928.1 CDS IA1_10725 NC_022525.1 2209580 2210326 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator complement(2209580..2210326) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613929.1 CDS IA1_10730 NC_022525.1 2210362 2211162 R catalyzes the formation hydroxymethylpyrimidine phosphate from hydroxymethylpyrimidine and the formation of of 4-amino-2-methyl-5-diphosphomethylpyrimidine from hydroxymethylpyrimidine phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase complement(2210362..2211162) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613930.1 CDS IA1_10735 NC_022525.1 2211149 2211946 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyethylthiazole kinase complement(2211149..2211946) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613931.1 CDS IA1_10740 NC_022525.1 2212356 2212670 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel/cobalt homeostasis protein RcnB 2212356..2212670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613932.1 CDS IA1_10745 NC_022525.1 2212714 2213736 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein complement(2212714..2213736) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613933.1 CDS IA1_10750 NC_022525.1 2213752 2216238 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial outer membrane usher protein complement(2213752..2216238) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613934.1 CDS IA1_10755 NC_022525.1 2216267 2216947 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial assembly chaperone protein StcB complement(2216267..2216947) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613935.1 CDS IA1_10760 NC_022525.1 2217009 2217542 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(2217009..2217542) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613936.1 CDS IA1_10765 NC_022525.1 2217821 2218102 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2217821..2218102) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613937.1 CDS IA1_10770 NC_022525.1 2218380 2219489 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ATPase complement(2218380..2219489) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613938.1 CDS metG NC_022525.1 2219654 2221687 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionyl-tRNA synthetase 2219654..2221687 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613939.1 CDS IA1_10780 NC_022525.1 2221928 2222386 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2221928..2222386 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613940.1 CDS IA1_10785 NC_022525.1 2222558 2223088 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2222558..2223088 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613941.1 CDS IA1_10790 NC_022525.1 2223145 2223612 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2223145..2223612) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613942.1 CDS IA1_10795 NC_022525.1 2223659 2224378 R unknown function; when overproduced it confers drug-resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2223659..2224378) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613943.1 CDS IA1_10800 NC_022525.1 2224375 2226060 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase complement(2224375..2226060) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613944.1 CDS IA1_10805 NC_022525.1 2226283 2227014 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MerR family transcriptional regulator 2226283..2227014 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613945.1 CDS IA1_10810 NC_022525.1 2227074 2227181 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2227074..2227181 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613946.1 CDS IA1_10815 NC_022525.1 2227162 2227893 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter permease complement(2227162..2227893) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613947.1 CDS IA1_10820 NC_022525.1 2227877 2228824 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter ATP-binding protein complement(2227877..2228824) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613948.1 CDS IA1_10825 NC_022525.1 2228817 2229986 R Derived by automated computational analysis using gene prediction method: Protein Homology.; osmoprotectant uptake system permease complement(2228817..2229986) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613949.1 CDS IA1_10830 NC_022525.1 2229990 2230907 R Derived by automated computational analysis using gene prediction method: Protein Homology.; osmoprotectant uptake system substrate-binding protein complement(2229990..2230907) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613950.1 CDS IA1_10835 NC_022525.1 2231088 2233385 R catalyzes the hydrolysis of terminal beta-D-glucosyl residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-D-glucoside glucohydrolase complement(2231088..2233385) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613951.1 CDS IA1_10840 NC_022525.1 2233652 2235382 D component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-lactate dehydrogenase 2233652..2235382 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613952.1 CDS pbpG NC_022525.1 2235441 2236388 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine endopeptidase complement(2235441..2236388) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613953.1 CDS IA1_10850 NC_022525.1 2236554 2237141 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2236554..2237141) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613954.1 CDS IA1_10855 NC_022525.1 2237273 2237869 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2237273..2237869 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613955.1 CDS IA1_10860 NC_022525.1 2237917 2238678 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(2237917..2238678) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613956.1 CDS IA1_10865 NC_022525.1 2238744 2240180 R may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance outer membrane protein MdtQ complement(2238744..2240180) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613957.1 CDS IA1_10870 NC_022525.1 2240498 2240581 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2240498..2240581 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613958.1 CDS IA1_10875 NC_022525.1 2240639 2241577 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA-dihydrouridine synthase C complement(2240639..2241577) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613959.1 CDS IA1_10880 NC_022525.1 2241686 2242879 R catalyzes the formation of catechol from salicylate; Derived by automated computational analysis using gene prediction method: Protein Homology.; salicylate hydroxylase complement(2241686..2242879) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613960.1 CDS IA1_10885 NC_022525.1 2242894 2243538 R Derived by automated computational analysis using gene prediction method: Protein Homology.; maleylacetoacetate isomerase complement(2242894..2243538) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613961.1 CDS IA1_10890 NC_022525.1 2243547 2244248 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-carboxymethyl-2-hydroxymuconate isomerase complement(2243547..2244248) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613962.1 CDS IA1_10895 NC_022525.1 2244264 2245301 R Derived by automated computational analysis using gene prediction method: Protein Homology.; gentisate 1,2-dioxygenase complement(2244264..2245301) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613963.1 CDS IA1_10900 NC_022525.1 2245313 2246671 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxybenzoate transporter complement(2245313..2246671) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613964.1 CDS IA1_10905 NC_022525.1 2246797 2247705 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2246797..2247705 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613965.1 CDS IA1_10910 NC_022525.1 2247837 2248235 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2247837..2248235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613966.1 CDS IA1_10915 NC_022525.1 2248232 2248927 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2248232..2248927 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613967.1 CDS IA1_10920 NC_022525.1 2249081 2249965 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytidine deaminase 2249081..2249965 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613968.1 CDS IA1_10925 NC_022525.1 2250142 2250861 D involved in vancomycin sensitivity and other barrier functions of the cell envelope; Derived by automated computational analysis using gene prediction method: Protein Homology.; vancomycin high temperature exclusion protein 2250142..2250861 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613969.1 CDS IA1_10930 NC_022525.1 2250858 2251103 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2250858..2251103 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613970.1 CDS IA1_10935 NC_022525.1 2251308 2252549 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropyrimidine dehydrogenase subunit A 2251308..2252549 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613971.1 CDS IA1_10940 NC_022525.1 2252543 2253778 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropyrimidine dehydrogenase subunit B 2252543..2253778 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613972.1 CDS mglC NC_022525.1 2253853 2254863 R ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-methylgalactoside transporter complement(2253853..2254863) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613973.1 CDS IA1_10950 NC_022525.1 2254879 2256399 R with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-ribose transporter ATP binding protein complement(2254879..2256399) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613974.1 CDS IA1_10955 NC_022525.1 2256533 2257531 R wtih MglAC is involved in the transport of beta-methylgalactoside; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-galactoside ABC transporter substrate-binding protein complement(2256533..2257531) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613975.1 CDS IA1_10960 NC_022525.1 2258030 2259052 R controls transcription of galETKM; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2258030..2259052) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613976.1 CDS IA1_10965 NC_022525.1 2259042 2259209 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2259042..2259209 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613977.1 CDS IA1_10970 NC_022525.1 2259202 2260362 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2259202..2260362) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613978.1 CDS IA1_10975 NC_022525.1 2260359 2261027 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP cyclohydrolase I complement(2260359..2261027) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613979.1 CDS IA1_10985 NC_022525.1 2262203 2262592 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein complement(2262203..2262592) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613980.1 CDS IA1_10990 NC_022525.1 2262597 2263964 R catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-serine dehydratase complement(2262597..2263964) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613981.1 CDS IA1_10995 NC_022525.1 2264181 2265068 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 2264181..2265068 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613982.1 CDS IA1_11000 NC_022525.1 2265101 2266423 D Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 2265101..2266423 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613983.1 CDS IA1_11005 NC_022525.1 2266467 2268458 R Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; catecholate siderophore receptor CirA complement(2266467..2268458) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613984.1 CDS IA1_11010 NC_022525.1 2268804 2270273 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine transporter complement(2268804..2270273) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613985.1 CDS IA1_11015 NC_022525.1 2270463 2271326 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2270463..2271326) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613986.1 CDS IA1_11020 NC_022525.1 2271447 2272496 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2271447..2272496 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613987.1 CDS IA1_11025 NC_022525.1 2272575 2273432 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease V 2272575..2273432 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613988.1 CDS IA1_11030 NC_022525.1 2273497 2275185 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIBC complement(2273497..2275185) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613989.1 CDS fruK NC_022525.1 2275202 2276140 R converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-phosphofructokinase complement(2275202..2276140) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613990.1 CDS IA1_11040 NC_022525.1 2276140 2277270 R phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HPr which then transfers the phosphoryl group to the IIB component; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIA complement(2276140..2277270) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613991.1 CDS IA1_11045 NC_022525.1 2277291 2277422 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2277291..2277422 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613992.1 CDS IA1_11050 NC_022525.1 2277639 2278820 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar transporter 2277639..2278820 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613993.1 CDS IA1_11055 NC_022525.1 2278885 2279550 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2278885..2279550) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613994.1 CDS IA1_11060 NC_022525.1 2280640 2281212 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2280640..2281212 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613995.1 CDS IA1_11065 NC_022525.1 2281425 2282411 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2281425..2282411 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613996.1 CDS IA1_11070 NC_022525.1 2282441 2283160 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2282441..2283160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613997.1 CDS IA1_11075 NC_022525.1 2283574 2284146 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase 2283574..2284146 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613998.1 CDS IA1_11080 NC_022525.1 2284472 2286028 D involved in resistance to the phages N4 and lambda; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage resistance protein 2284472..2286028 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008613999.1 CDS IA1_11085 NC_022525.1 2286135 2287940 D with YejBEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein 2286135..2287940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614000.1 CDS IA1_11090 NC_022525.1 2287950 2289044 D with YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.; microcin C ABC transporter permease YejB 2287950..2289044 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614001.1 CDS IA1_11095 NC_022525.1 2289044 2290069 D part of the microcin C transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; microcin C ABC transporter permease 2289044..2290069 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614002.1 CDS IA1_11100 NC_022525.1 2290071 2291660 D with YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.; microcin C ABC transporter ATP-binding protein YejF 2290071..2291660 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614003.1 CDS IA1_11105 NC_022525.1 2291664 2292008 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2291664..2292008) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614004.1 CDS IA1_11110 NC_022525.1 2292399 2293589 R Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; multidrug transporter complement(2292399..2293589) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614005.1 CDS IA1_11115 NC_022525.1 2293617 2294312 R catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA pseudouridylate synthase complement(2293617..2294312) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614006.1 CDS IA1_11120 NC_022525.1 2294464 2296224 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2294464..2296224 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614007.1 CDS IA1_11125 NC_022525.1 2296349 2296633 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L25 2296349..2296633 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614008.1 CDS IA1_11130 NC_022525.1 2296742 2297362 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(2296742..2297362) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614009.1 CDS IA1_11135 NC_022525.1 2297390 2298397 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoid-associated protein NdpA complement(2297390..2298397) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614010.1 CDS IA1_11140 NC_022525.1 2298577 2298804 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2298577..2298804 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614011.1 CDS IA1_11145 NC_022525.1 2298836 2300596 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2298836..2300596 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614012.1 CDS IA1_11160 NC_022525.1 2301057 2301206 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA polymerase V complement(2301057..2301206) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614013.1 CDS IA1_11165 NC_022525.1 2301367 2303031 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2301367..2303031) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614014.1 CDS IA1_11175 NC_022525.1 2304282 2305124 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein complement(2304282..2305124) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614015.1 CDS IA1_11180 NC_022525.1 2305202 2305579 D Derived by automated computational analysis using gene prediction method: Protein Homology.; virulence protein MsgA 2305202..2305579 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614016.1 CDS IA1_11185 NC_022525.1 2305771 2306328 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(2305771..2306328) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614017.1 CDS IA1_11190 NC_022525.1 2307064 2307711 D nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2307064..2307711 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614018.1 CDS IA1_11195 NC_022525.1 2307755 2308798 R cytochrome c-type biogenesis protein; involved in the attachment of heme to cytochrome c; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme lyase subunit CcmH complement(2307755..2308798) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614019.1 CDS IA1_11200 NC_022525.1 2308795 2309352 R cytochrome c-type biogenesis thioredoxin; involved in the reduction of disulfide bonds to allow heme bonding; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol:disulfide interchange protein complement(2308795..2309352) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614020.1 CDS IA1_11205 NC_022525.1 2309349 2311280 R cytochrome c-type biogenesis protein; required for the transfer of heme to apocytochrome c; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; heme lyase subunit CcmF complement(2309349..2311280) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614021.1 CDS IA1_11210 NC_022525.1 2311277 2311756 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C biogenesis protein complement(2311277..2311756) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614022.1 CDS IA1_11215 NC_022525.1 2311753 2311965 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2311753..2311965) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614023.1 CDS IA1_11220 NC_022525.1 2311962 2312699 R with CcmABDE is involved in the transport of protoheme IX; CcmC is required for heme transfer to CcmE; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter permease complement(2311962..2312699) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614024.1 CDS IA1_11225 NC_022525.1 2312751 2313410 R with CcmABCE is involved in the transport of protoheme IX; CcmB is required for the release of holoCcmE from CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter permease complement(2312751..2313410) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614025.1 CDS IA1_11230 NC_022525.1 2313407 2314024 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cytochrome C biogenesis protein CcmA complement(2313407..2314024) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614026.1 CDS IA1_11235 NC_022525.1 2314045 2314647 R with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C protein NapC complement(2314045..2314647) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614027.1 CDS napB NC_022525.1 2314657 2315106 R small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase cytochrome C550 subunit complement(2314657..2315106) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614028.1 CDS napH NC_022525.1 2315222 2316091 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; quinol dehydrogenase complement(2315222..2316091) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614029.1 CDS napG NC_022525.1 2316078 2316773 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; quinol dehydrogenase complement(2316078..2316773) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614030.1 CDS IA1_11255 NC_022525.1 2316780 2319266 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase catalytic subunit complement(2316780..2319266) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614031.1 CDS IA1_11260 NC_022525.1 2319263 2319526 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase complement(2319263..2319526) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614032.1 CDS IA1_11265 NC_022525.1 2319516 2320007 R Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ferredoxin complement(2319516..2320007) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614033.1 CDS IA1_11270 NC_022525.1 2320409 2320915 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ecotin 2320409..2320915 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614034.1 CDS IA1_11275 NC_022525.1 2321088 2322731 R efflux pump for the antibacterial peptide microcin J25; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein complement(2321088..2322731) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614035.1 CDS IA1_11280 NC_022525.1 2322807 2323457 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ketoglutarate-dependent dioxygenase complement(2322807..2323457) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614036.1 CDS IA1_11285 NC_022525.1 2323460 2324521 R regulates genes involved in the repair of alkylated DNA; repairs DNA containing 6-O-methylguanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2323460..2324521) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614037.1 CDS IA1_11290 NC_022525.1 2324602 2325654 R catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine biosynthesis lipoprotein ApbE complement(2324602..2325654) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614038.1 CDS IA1_11295 NC_022525.1 2325769 2326905 R allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin protein C complement(2325769..2326905) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614039.1 CDS IA1_11300 NC_022525.1 2327634 2330303 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2327634..2330303 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614040.1 CDS IA1_11305 NC_022525.1 2330320 2330970 D two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2330320..2330970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614041.1 CDS IA1_11310 NC_022525.1 2331073 2333919 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase complement(2331073..2333919) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614042.1 CDS IA1_11315 NC_022525.1 2334037 2336673 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase subunit A complement(2334037..2336673) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614043.1 CDS IA1_11320 NC_022525.1 2337083 2338285 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MR-MLE family protein complement(2337083..2338285) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614044.1 CDS IA1_11325 NC_022525.1 2338300 2339625 R Derived by automated computational analysis using gene prediction method: Protein Homology.; permease complement(2338300..2339625) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614045.1 CDS IA1_11330 NC_022525.1 2339864 2340559 D Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 2339864..2340559 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614046.1 CDS IA1_11335 NC_022525.1 2340642 2341370 D Involved in ubiquinone biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase 2340642..2341370 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614047.1 CDS IA1_11340 NC_022525.1 2341726 2344011 D Catalyzes the rate-limiting step in dNTP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit alpha 2341726..2344011 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614048.1 CDS IA1_11345 NC_022525.1 2344124 2345254 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit beta 2344124..2345254 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614049.1 CDS IA1_11350 NC_022525.1 2345254 2345508 D plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2Fe-2S ferredoxin 2345254..2345508 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614050.1 CDS IA1_11355 NC_022525.1 2345510 2346700 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter complement(2345510..2346700) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614051.1 CDS IA1_11360 NC_022525.1 2346862 2347740 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2346862..2347740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614052.1 CDS glpQ NC_022525.1 2347855 2348925 R hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerophosphodiester phosphodiesterase complement(2347855..2348925) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614053.1 CDS glpT NC_022525.1 2348930 2350288 R catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate transporter complement(2348930..2350288) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614054.1 CDS glpA NC_022525.1 2350561 2352189 D anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate dehydrogenase subunit A 2350561..2352189 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614055.1 CDS IA1_11380 NC_022525.1 2352179 2353438 D sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate dehydrogenase subunit B 2352179..2353438 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614056.1 CDS glpC NC_022525.1 2353435 2354625 D anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate dehydrogenase subunit C 2353435..2354625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614057.1 CDS IA1_11390 NC_022525.1 2355051 2356073 D similar to ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system; Derived by automated computational analysis using gene prediction method: Protein Homology.; deubiquitinase 2355051..2356073 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614058.1 CDS IA1_11395 NC_022525.1 2356183 2356359 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2356183..2356359) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614059.1 CDS IA1_11400 NC_022525.1 2356365 2357168 R catalyzes the retro-aldol cleavage of 2-keto-3-deoxy-L-rhamnonate to pyruvate and lactaldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxy-L-rhamnonate aldolase complement(2356365..2357168) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614060.1 CDS IA1_11405 NC_022525.1 2357194 2358483 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxyphenylacetate permease complement(2357194..2358483) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614061.1 CDS IA1_11410 NC_022525.1 2358539 2359756 R catalyzes the formation of 2-keto-3-deoxy-L-rhamnonate from L-rhamnonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-rhamnonate dehydratase complement(2358539..2359756) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614062.1 CDS IA1_11415 NC_022525.1 2359758 2360540 R Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator complement(2359758..2360540) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614063.1 CDS IA1_11420 NC_022525.1 2360790 2361986 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2360790..2361986) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614064.1 CDS IA1_11425 NC_022525.1 2362101 2362775 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2362101..2362775) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614065.1 CDS IA1_11430 NC_022525.1 2362922 2363347 D catalyzes the hydrolysis of nucleoside triphosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphatase NudI 2362922..2363347 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614066.1 CDS IA1_11435 NC_022525.1 2363392 2363997 R catalyzes the of heptose(II) of the outer membrane lipopolysaccharide core; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core heptose(II)-phosphate phosphatase complement(2363392..2363997) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614067.1 CDS IA1_11440 NC_022525.1 2364296 2365435 D catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase 2364296..2365435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614068.1 CDS IA1_11445 NC_022525.1 2365438 2366421 D catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase 2365438..2366421 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614069.1 CDS IA1_11450 NC_022525.1 2366418 2368400 D Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2366418..2368400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614070.1 CDS IA1_11455 NC_022525.1 2368397 2369296 D catalyzes the formation of 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase 2368397..2369296 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614071.1 CDS arnT NC_022525.1 2369293 2370939 D catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-amino-4-deoxy-L-arabinose transferase 2369293..2370939 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614072.1 CDS IA1_11465 NC_022525.1 2370936 2371271 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2370936..2371271 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614073.1 CDS IA1_11470 NC_022525.1 2371271 2371648 D with ArnE is responsible for the transport of 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from the cytoplasm to the periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase subunit F 2371271..2371648 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614074.1 CDS IA1_11475 NC_022525.1 2371643 2371900 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2371643..2371900) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614075.1 CDS IA1_11480 NC_022525.1 2371998 2373365 R Derived by automated computational analysis using gene prediction method: Protein Homology.; O-succinylbenzoic acid--CoA ligase complement(2371998..2373365) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614076.1 CDS IA1_11485 NC_022525.1 2373362 2374324 R catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; O-succinylbenzoate synthase complement(2373362..2374324) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614077.1 CDS IA1_11490 NC_022525.1 2374324 2375181 R catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroxynaphthoic acid synthetase complement(2374324..2375181) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614078.1 CDS IA1_11495 NC_022525.1 2375196 2375954 R catalyzes the formation of (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate in menaquinone biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase complement(2375196..2375954) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614079.1 CDS IA1_11500 NC_022525.1 2375951 2377621 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(2375951..2377621) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614080.1 CDS IA1_11505 NC_022525.1 2377707 2379002 R Derived by automated computational analysis using gene prediction method: Protein Homology.; isochorismate synthase complement(2377707..2379002) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614081.1 CDS IA1_11510 NC_022525.1 2379103 2379408 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(2379103..2379408) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614082.1 CDS IA1_11515 NC_022525.1 2379463 2379924 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyltransferase complement(2379463..2379924) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614083.1 CDS IA1_11520 NC_022525.1 2379985 2380902 D RNase BN; member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ribonuclease Z 2379985..2380902 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614084.1 CDS IA1_11525 NC_022525.1 2380968 2381969 D Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheV 2380968..2381969 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614085.1 CDS IA1_11530 NC_022525.1 2382010 2383791 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2382010..2383791) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614086.1 CDS IA1_11535 NC_022525.1 2383902 2384021 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2383902..2384021) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614087.1 CDS IA1_11540 NC_022525.1 2384796 2386253 R Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit N complement(2384796..2386253) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614088.1 CDS IA1_11545 NC_022525.1 2386260 2387789 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit M complement(2386260..2387789) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614089.1 CDS IA1_11550 NC_022525.1 2387866 2389707 R Catalyzes the transfer of electrons from NADH to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit L complement(2387866..2389707) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614090.1 CDS IA1_11555 NC_022525.1 2389704 2390006 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; NADH:ubiquinone oxidoreductase subunit K complement(2389704..2390006) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614091.1 CDS IA1_11560 NC_022525.1 2390003 2390557 R Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit J complement(2390003..2390557) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614092.1 CDS IA1_11565 NC_022525.1 2390568 2391110 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit I complement(2390568..2391110) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614093.1 CDS IA1_11570 NC_022525.1 2391125 2392102 R Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit H complement(2391125..2392102) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614094.1 CDS IA1_11575 NC_022525.1 2392099 2394825 R Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit G complement(2392099..2394825) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614095.1 CDS IA1_11580 NC_022525.1 2394856 2396193 R part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; NADH dehydrogenase subunit F complement(2394856..2396193) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614096.1 CDS IA1_11585 NC_022525.1 2396190 2396690 R Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit E complement(2396190..2396690) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614097.1 CDS IA1_11590 NC_022525.1 2396693 2398495 R NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional NADH:ubiquinone oxidoreductase subunit C/D complement(2396693..2398495) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614098.1 CDS IA1_11595 NC_022525.1 2398582 2399244 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit B complement(2398582..2399244) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614099.1 CDS IA1_11600 NC_022525.1 2399260 2399703 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit A complement(2399260..2399703) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614100.1 CDS IA1_11605 NC_022525.1 2400329 2401267 R involved in the regulation of genes involved in flagella synthesis, motility and chemotaxis; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2400329..2401267) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614101.1 CDS IA1_11610 NC_022525.1 2401932 2402093 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2401932..2402093) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614102.1 CDS IA1_11615 NC_022525.1 2402199 2403413 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminotransferase AlaT 2402199..2403413 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614103.1 CDS IA1_11620 NC_022525.1 2403507 2404106 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-nucleotidase 2403507..2404106 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614104.1 CDS IA1_11625 NC_022525.1 2404204 2406030 R Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate transporter complement(2404204..2406030) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614105.1 CDS IA1_11630 NC_022525.1 2406107 2406766 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatase complement(2406107..2406766) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614106.1 CDS IA1_11635 NC_022525.1 2406777 2407271 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2406777..2407271) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614107.1 CDS IA1_11640 NC_022525.1 2407354 2407731 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2407354..2407731) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614108.1 CDS IA1_11645 NC_022525.1 2408149 2409351 D Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetate kinase 2408149..2409351 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614109.1 CDS IA1_11650 NC_022525.1 2409428 2411572 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate acetyltransferase 2409428..2411572 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614110.1 CDS IA1_11655 NC_022525.1 2411790 2413310 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2411790..2413310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614111.1 CDS IA1_11660 NC_022525.1 2413359 2414312 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transketolase complement(2413359..2414312) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614112.1 CDS IA1_11665 NC_022525.1 2414305 2415135 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; carbohydrate degradation protein complement(2414305..2415135) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614113.1 CDS ulaA NC_022525.1 2415132 2416523 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS ascorbate transporter subunit IIC complement(2415132..2416523) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614114.1 CDS IA1_11675 NC_022525.1 2416544 2416816 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannitol transporter subunit IIB complement(2416544..2416816) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614115.1 CDS IA1_11680 NC_022525.1 2416897 2417340 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS ascorbate transporter subunit IIA complement(2416897..2417340) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614116.1 CDS IA1_11685 NC_022525.1 2417339 2417512 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2417339..2417512 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614117.1 CDS IA1_11690 NC_022525.1 2417593 2418612 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family transcriptional regulator 2417593..2418612 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614118.1 CDS IA1_11695 NC_022525.1 2418618 2419172 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NUDIX hydrolase complement(2418618..2419172) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614119.1 CDS IA1_11700 NC_022525.1 2419229 2419780 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphodiesterase complement(2419229..2419780) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614120.1 CDS IA1_11705 NC_022525.1 2419836 2420480 R catalyzes the formation of 2,4-dinitrophenyl-S-glutathione from 1-chloro-2,4-dinitrobenzene and glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase complement(2419836..2420480) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614121.1 CDS IA1_11710 NC_022525.1 2420623 2421270 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase 2420623..2421270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614122.1 CDS IA1_11715 NC_022525.1 2421396 2422289 D Derived by automated computational analysis using gene prediction method: Protein Homology.; epimerase 2421396..2422289 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614123.1 CDS glnQ NC_022525.1 2422341 2423117 R similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine ABC transporter ATP-binding protein complement(2422341..2423117) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614124.1 CDS IA1_11725 NC_022525.1 2423128 2423835 R with HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine/lysine/arginine/ornithine ABC transporter permease HisM complement(2423128..2423835) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614125.1 CDS IA1_11730 NC_022525.1 2423832 2424518 R with HisJMP is involved in the transport of histidine/lysine/arginine/ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine/lysine/arginine/ornithine ABC transporter permease HisQ complement(2423832..2424518) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614126.1 CDS IA1_11735 NC_022525.1 2424700 2425482 R Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter complement(2424700..2425482) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614127.1 CDS IA1_11740 NC_022525.1 2425720 2426502 R with HisPMQ is involved in the transport of histidine; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein complement(2425720..2426502) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614128.1 CDS IA1_11745 NC_022525.1 2426580 2426702 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2426580..2426702 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614129.1 CDS IA1_11750 NC_022525.1 2426791 2427360 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2426791..2427360) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614130.1 CDS IA1_11755 NC_022525.1 2427387 2428793 R Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid permease complement(2427387..2428793) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614131.1 CDS IA1_11760 NC_022525.1 2428857 2429960 R Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid racemase complement(2428857..2429960) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614132.1 CDS IA1_11765 NC_022525.1 2429962 2431383 R Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid transporter complement(2429962..2431383) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614133.1 CDS IA1_11770 NC_022525.1 2431474 2432871 R Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminopimelate decarboxylase complement(2431474..2432871) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614134.1 CDS IA1_11775 NC_022525.1 2433082 2434509 D Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 2433082..2434509 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614135.1 CDS IA1_11780 NC_022525.1 2434545 2436062 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; amidophosphoribosyltransferase complement(2434545..2436062) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614136.1 CDS IA1_11785 NC_022525.1 2436100 2436588 R membrane protein required for colicin V production; Derived by automated computational analysis using gene prediction method: Protein Homology.; colicin V production protein complement(2436100..2436588) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614137.1 CDS IA1_11790 NC_022525.1 2436604 2436759 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2436604..2436759) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614138.1 CDS IA1_11795 NC_022525.1 2436900 2437574 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein DedD complement(2436900..2437574) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614139.1 CDS IA1_11800 NC_022525.1 2437564 2438832 R Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(2437564..2438832) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614140.1 CDS IA1_11805 NC_022525.1 2438900 2439814 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase subunit beta complement(2438900..2439814) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614141.1 CDS IA1_11810 NC_022525.1 2439964 2440623 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2439964..2440623) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614142.1 CDS truA NC_022525.1 2440672 2441484 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase A complement(2440672..2441484) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614143.1 CDS IA1_11820 NC_022525.1 2441484 2442497 R Derived by automated computational analysis using gene prediction method: Protein Homology.; semialdehyde dehydrogenase complement(2441484..2442497) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614144.1 CDS IA1_11825 NC_022525.1 2442565 2443701 R catalyzes the formation of 3-hydroxy-2-oxo-4-phosphonooxybutanoate from erythronate-4-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; erythronate-4-phosphate dehydrogenase complement(2442565..2443701) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614145.1 CDS flk NC_022525.1 2443805 2444806 D in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagella biosynthesis regulator 2443805..2444806 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614146.1 CDS IA1_11835 NC_022525.1 2444803 2445981 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2444803..2445981) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614147.1 CDS IA1_11840 NC_022525.1 2446161 2446535 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2446161..2446535) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614148.1 CDS IA1_11845 NC_022525.1 2446708 2446956 D activator of maltose metabolism genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2446708..2446956 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614149.1 CDS IA1_11850 NC_022525.1 2447125 2447493 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2447125..2447493 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614150.1 CDS IA1_11855 NC_022525.1 2447493 2448011 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2447493..2448011 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614151.1 CDS IA1_11860 NC_022525.1 2448078 2448734 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2448078..2448734) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614152.1 CDS IA1_11865 NC_022525.1 2448832 2450046 R FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacyl-ACP synthase complement(2448832..2450046) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614153.1 CDS mnmC NC_022525.1 2450206 2452206 D 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase/FAD-dependent demodification enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA methyltransferase 2450206..2452206 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614154.1 CDS IA1_11875 NC_022525.1 2452258 2452533 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2452258..2452533) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614155.1 CDS IA1_11880 NC_022525.1 2452566 2453114 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2452566..2453114) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614156.1 CDS IA1_11885 NC_022525.1 2453114 2453923 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2453114..2453923) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614157.1 CDS mepA NC_022525.1 2453923 2454747 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-insensitive murein endopeptidase complement(2453923..2454747) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614158.1 CDS IA1_11895 NC_022525.1 2454751 2455836 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate synthase complement(2454751..2455836) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614159.1 CDS IA1_11900 NC_022525.1 2455872 2456804 R involved in methylation of ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(2455872..2456804) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614160.1 CDS IA1_11905 NC_022525.1 2456970 2457521 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase S10 2456970..2457521 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614161.1 CDS IA1_11910 NC_022525.1 2457621 2458106 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphohistidine phosphatase complement(2457621..2458106) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614162.1 CDS fadJ NC_022525.1 2458315 2460462 R multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fatty-acid oxidation protein subunit alpha complement(2458315..2460462) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614163.1 CDS fadA NC_022525.1 2460462 2461772 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-ketoacyl-CoA thiolase complement(2460462..2461772) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614164.1 CDS IA1_11925 NC_022525.1 2461950 2462234 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2461950..2462234) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614165.1 CDS IA1_11930 NC_022525.1 2462599 2463912 D Derived by automated computational analysis using gene prediction method: Protein Homology.; long-chain fatty acid outer membrane transporter 2462599..2463912 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614166.1 CDS IA1_11935 NC_022525.1 2463973 2464728 R involved in maintaining OM lipid asymmetry; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2463973..2464728) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614167.1 CDS IA1_11940 NC_022525.1 2465017 2465958 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2465017..2465958 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614168.1 CDS IA1_11950 NC_022525.1 2466266 2467204 R outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protease complement(2466266..2467204) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614169.1 CDS IA1_11955 NC_022525.1 2467472 2468719 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2467472..2468719) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614170.1 CDS IA1_11960 NC_022525.1 2468709 2470715 R Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine kinase complement(2468709..2470715) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614171.1 CDS IA1_11965 NC_022525.1 2470712 2471905 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein complement(2470712..2471905) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614172.1 CDS IA1_11970 NC_022525.1 2472341 2473732 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerate transporter 2472341..2473732 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614173.1 CDS IA1_11975 NC_022525.1 2474007 2474249 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2474007..2474249) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614174.1 CDS IA1_11980 NC_022525.1 2474410 2474523 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transporter complement(2474410..2474523) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614175.1 CDS IA1_11985 NC_022525.1 2474771 2475691 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid A biosynthesis palmitoleoyl acyltransferase 2474771..2475691 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614176.1 CDS IA1_11990 NC_022525.1 2476215 2477453 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate aminotransferase complement(2476215..2477453) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614177.1 CDS glk NC_022525.1 2478173 2479138 R catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucokinase complement(2478173..2479138) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614178.1 CDS IA1_12000 NC_022525.1 2479342 2480577 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ion channel protein 2479342..2480577 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614179.1 CDS IA1_12005 NC_022525.1 2480597 2482249 R thiamindiphosphate-dependent; catalyzes the formation of indoleacetaldehyde from indolepyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; indolepyruvate decarboxylase complement(2480597..2482249) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614180.1 CDS IA1_12010 NC_022525.1 2482429 2483427 D Derived by automated computational analysis using gene prediction method: Protein Homology.; L-glyceraldehyde 3-phosphate reductase 2482429..2483427 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614181.1 CDS IA1_12015 NC_022525.1 2483541 2483867 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2483541..2483867 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614182.1 CDS IA1_12020 NC_022525.1 2483928 2485169 R Derived by automated computational analysis using gene prediction method: Protein Homology.; manganese transporter complement(2483928..2485169) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614183.1 CDS IA1_12025 NC_022525.1 2485512 2486714 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside permease 2485512..2486714 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614184.1 CDS IA1_12030 NC_022525.1 2486767 2488956 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2486767..2488956) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614185.1 CDS IA1_12045 NC_022525.1 2489562 2489924 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2489562..2489924 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614186.1 CDS IA1_12050 NC_022525.1 2489926 2490318 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2489926..2490318 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614187.1 CDS gltX NC_022525.1 2490372 2491787 R catalyzes a two-step reaction, first charging an glutamate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaminyl-tRNA synthetase complement(2490372..2491787) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614188.1 CDS IA1_12080 NC_022525.1 2492602 2493486 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(2492602..2493486) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614189.1 CDS IA1_12085 NC_022525.1 2493538 2493696 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; XapX domain-containing protein complement(2493538..2493696) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614190.1 CDS IA1_12090 NC_022525.1 2493755 2495011 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside permease complement(2493755..2495011) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614191.1 CDS IA1_12095 NC_022525.1 2495066 2495899 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; purine nucleoside phosphorylase complement(2495066..2495899) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614192.1 CDS IA1_12100 NC_022525.1 2496155 2496916 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2496155..2496916 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614193.1 CDS IA1_12105 NC_022525.1 2496978 2497904 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(2496978..2497904) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614194.1 CDS IA1_12110 NC_022525.1 2497994 2498992 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2497994..2498992 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614195.1 CDS IA1_12115 NC_022525.1 2498989 2499207 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2498989..2499207) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614196.1 CDS ligA NC_022525.1 2499209 2501224 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; NAD-dependent DNA ligase LigA complement(2499209..2501224) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614197.1 CDS IA1_12125 NC_022525.1 2501296 2502282 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein ZipA complement(2501296..2502282) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614198.1 CDS IA1_12130 NC_022525.1 2502514 2503275 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate transporter 2502514..2503275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614199.1 CDS IA1_12135 NC_022525.1 2503439 2504410 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine synthase A 2503439..2504410 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614200.1 CDS IA1_12140 NC_022525.1 2504529 2504654 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2504529..2504654) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614201.1 CDS IA1_12145 NC_022525.1 2504794 2505051 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter 2504794..2505051 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614202.1 CDS IA1_12150 NC_022525.1 2505100 2506827 D Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate-protein phosphotransferase 2505100..2506827 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614203.1 CDS IA1_12155 NC_022525.1 2506868 2507377 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS glucose transporter subunit IIA 2506868..2507377 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614204.1 CDS IA1_12160 NC_022525.1 2507540 2507779 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2507540..2507779) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614205.1 CDS pdxK NC_022525.1 2507776 2508642 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxymethylpyrimidine kinase complement(2507776..2508642) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614206.1 CDS IA1_12170 NC_022525.1 2508725 2510017 D regulator of the ptsHI/crr operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2508725..2510017 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614207.1 CDS IA1_12175 NC_022525.1 2510032 2510751 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine amidotransferase 2510032..2510751 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614208.1 CDS IA1_12180 NC_022525.1 2510810 2511190 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2510810..2511190 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614209.1 CDS IA1_12185 NC_022525.1 2511203 2511742 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2511203..2511742 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614210.1 CDS cysM NC_022525.1 2511873 2512784 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine synthase B complement(2511873..2512784) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614211.1 CDS IA1_12195 NC_022525.1 2512852 2513949 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate ABC transporter ATP-binding protein complement(2512852..2513949) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614212.1 CDS cysW NC_022525.1 2513939 2514814 R Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate/thiosulfate transporter permease subunit complement(2513939..2514814) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614213.1 CDS IA1_12205 NC_022525.1 2514814 2515647 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate/thiosulfate transporter subunit complement(2514814..2515647) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614214.1 CDS IA1_12210 NC_022525.1 2515647 2516663 R Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate transporter subunit complement(2515647..2516663) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614215.1 CDS IA1_12215 NC_022525.1 2516821 2517612 R Derived by automated computational analysis using gene prediction method: Protein Homology.; short-chain dehydrogenase complement(2516821..2517612) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614216.1 CDS IA1_12220 NC_022525.1 2517850 2518749 R Derived by automated computational analysis using gene prediction method: Protein Homology.; deferrochelatase/peroxidase YfeX complement(2517850..2518749) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614217.1 CDS IA1_12225 NC_022525.1 2518844 2519419 R Derived by automated computational analysis using gene prediction method: Protein Homology.; RpoE-regulated lipoprotein complement(2518844..2519419) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614218.1 CDS IA1_12230 NC_022525.1 2519481 2519930 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2519481..2519930) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614219.1 CDS IA1_12235 NC_022525.1 2519917 2520342 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acetyltransferase complement(2519917..2520342) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614220.1 CDS IA1_12240 NC_022525.1 2520555 2521424 D Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase 2520555..2521424 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614221.1 CDS IA1_12245 NC_022525.1 2521427 2522326 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; coproporphyrinogen III oxidase 2521427..2522326 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614222.1 CDS IA1_12250 NC_022525.1 2522488 2522676 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2522488..2522676 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614223.1 CDS IA1_12255 NC_022525.1 2523125 2524177 R activates the transcription of the ethanolamine utilization operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2523125..2524177) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614224.1 CDS IA1_12260 NC_022525.1 2524225 2524719 R ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein complement(2524225..2524719) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614225.1 CDS IA1_12265 NC_022525.1 2524732 2525391 R carboxysome structural protein involved in ethanolamine utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutL complement(2524732..2525391) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614226.1 CDS IA1_12270 NC_022525.1 2525401 2526297 R catalyzes the formation of acetaldehyde from ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine ammonia-lyase small subunit complement(2525401..2526297) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614227.1 CDS IA1_12275 NC_022525.1 2526316 2527677 R with EutC catalyzes the formation of acetaldehyde and ammonia from ethanolamine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ethanolamine ammonia lyase large subunit complement(2526316..2527677) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614228.1 CDS eutA NC_022525.1 2527689 2529092 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutA complement(2527689..2529092) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614229.1 CDS IA1_12285 NC_022525.1 2529089 2530315 R may be involved in the transport of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutH complement(2529089..2530315) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614230.1 CDS IA1_12290 NC_022525.1 2530435 2531622 R aldehyde reductase; catalyzes the conversion of acetaldehyde to ethanol; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanol dehydrogenase complement(2530435..2531622) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614231.1 CDS IA1_12295 NC_022525.1 2531612 2532451 R possible chaperonin; may be involved in the assembly of the carboxysome; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutJ complement(2531612..2532451) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614232.1 CDS IA1_12300 NC_022525.1 2532462 2533865 R ethanolamine utilization protein; catalyzes the formation of acetyl-CoA from acetaldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase complement(2532462..2533865) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614233.1 CDS IA1_12305 NC_022525.1 2533877 2534176 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine catabolic microcompartment shell protein EutN complement(2533877..2534176) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614234.1 CDS IA1_12310 NC_022525.1 2534277 2534567 R ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein complement(2534277..2534567) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614235.1 CDS IA1_12315 NC_022525.1 2534608 2535624 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotransacetylase complement(2534608..2535624) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614236.1 CDS IA1_12320 NC_022525.1 2535621 2536424 R catalyzes the conversion of cob(I)yrinic acid a,c-diamide to adenosylcob(III)yrinic acid a,c-diamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization cobalamin adenosyltransferase complement(2535621..2536424) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614237.1 CDS IA1_12325 NC_022525.1 2536421 2537110 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutQ complement(2536421..2537110) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614238.1 CDS IA1_12330 NC_022525.1 2537088 2537567 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutP complement(2537088..2537567) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614239.1 CDS IA1_12335 NC_022525.1 2537580 2537915 R ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein complement(2537580..2537915) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614240.1 CDS IA1_12340 NC_022525.1 2538333 2540612 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malic enzyme complement(2538333..2540612) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614241.1 CDS IA1_12345 NC_022525.1 2540884 2541834 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transaldolase 2540884..2541834 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614242.1 CDS IA1_12350 NC_022525.1 2541854 2543854 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transketolase 2541854..2543854 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614243.1 CDS IA1_12355 NC_022525.1 2543917 2544147 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2543917..2544147) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614244.1 CDS IA1_12360 NC_022525.1 2544275 2545318 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2544275..2545318) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614245.1 CDS IA1_12365 NC_022525.1 2545443 2546018 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GDP-mannose pyrophosphatase NudK complement(2545443..2546018) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614246.1 CDS IA1_12370 NC_022525.1 2546222 2547520 D Derived by automated computational analysis using gene prediction method: Protein Homology.; esterase 2546222..2547520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614247.1 CDS IA1_12385 NC_022525.1 2550116 2551816 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate/nitrite sensor protein NarQ 2550116..2551816 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614248.1 CDS IA1_12390 NC_022525.1 2552001 2555114 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2552001..2555114 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614249.1 CDS IA1_12395 NC_022525.1 2555688 2556044 D Derived by automated computational analysis using gene prediction method: Protein Homology.; reductase 2555688..2556044 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614250.1 CDS IA1_12400 NC_022525.1 2556048 2557175 D Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyl-diaminopimelate desuccinylase 2556048..2557175 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614251.1 CDS IA1_12405 NC_022525.1 2557203 2557403 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2557203..2557403 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614252.1 CDS IA1_12410 NC_022525.1 2557430 2559448 R cetylates the wobble base C34 of the elongation-specific methionine tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine tRNA cytidine acetyltransferase complement(2557430..2559448) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614253.1 CDS IA1_12415 NC_022525.1 2559464 2560327 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2559464..2560327) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614254.1 CDS IA1_12420 NC_022525.1 2560458 2561171 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(2560458..2561171) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614255.1 CDS IA1_12425 NC_022525.1 2561346 2562380 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(2561346..2562380) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614256.1 CDS IA1_12430 NC_022525.1 2562397 2563275 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrodipicolinate synthase complement(2562397..2563275) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614257.1 CDS gcvR NC_022525.1 2563421 2563993 D negative transcriptional regulator of the gcvTHP operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine cleavage system regulatory protein 2563421..2563993 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614258.1 CDS bcp NC_022525.1 2563993 2564463 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin-dependent thiol peroxidase 2563993..2564463 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614259.1 CDS IA1_12445 NC_022525.1 2564510 2565649 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerate kinase complement(2564510..2565649) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614260.1 CDS IA1_12450 NC_022525.1 2565655 2566923 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; gluconate:proton symporter complement(2565655..2566923) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614261.1 CDS IA1_12455 NC_022525.1 2566991 2568172 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; XRE family transcriptional regulator complement(2566991..2568172) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614262.1 CDS IA1_12460 NC_022525.1 2568455 2569522 R Derived by automated computational analysis using gene prediction method: Protein Homology.; permase complement(2568455..2569522) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614263.1 CDS IA1_12465 NC_022525.1 2569730 2571193 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2569730..2571193 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614264.1 CDS IA1_12470 NC_022525.1 2571233 2571592 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arsenate reductase 2571233..2571592 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614265.1 CDS IA1_12475 NC_022525.1 2571619 2572344 R controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA replication initiation factor complement(2571619..2572344) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614266.1 CDS IA1_12480 NC_022525.1 2572415 2573704 R Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil transporter complement(2572415..2573704) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614267.1 CDS upp NC_022525.1 2573792 2574418 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil phosphoribosyltransferase complement(2573792..2574418) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614268.1 CDS IA1_12490 NC_022525.1 2574817 2575869 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylaminoimidazole synthetase 2574817..2575869 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614269.1 CDS purN NC_022525.1 2575869 2576507 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylglycinamide formyltransferase 2575869..2576507 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614270.1 CDS IA1_12500 NC_022525.1 2576696 2578762 D Derived by automated computational analysis using gene prediction method: Protein Homology.; polyphosphate kinase 2576696..2578762 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614271.1 CDS IA1_12505 NC_022525.1 2578767 2580308 D Derived by automated computational analysis using gene prediction method: Protein Homology.; exopolyphosphatase 2578767..2580308 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614272.1 CDS IA1_12510 NC_022525.1 2580344 2582557 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase complement(2580344..2582557) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614273.1 CDS IA1_12515 NC_022525.1 2582970 2583161 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2582970..2583161 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614274.1 CDS IA1_12520 NC_022525.1 2583498 2583959 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2583498..2583959 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614275.1 CDS IA1_12525 NC_022525.1 2583959 2584273 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2583959..2584273 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614276.1 CDS IA1_12530 NC_022525.1 2584293 2584583 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2584293..2584583) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614277.1 CDS guaA NC_022525.1 2584806 2586383 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; GMP synthase complement(2584806..2586383) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614278.1 CDS IA1_12540 NC_022525.1 2586453 2587919 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; inosine 5'-monophosphate dehydrogenase complement(2586453..2587919) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614279.1 CDS xseA NC_022525.1 2588080 2589429 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VII large subunit 2588080..2589429 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614280.1 CDS IA1_12550 NC_022525.1 2589591 2595629 R binds fibronectin; may be required for intestinal persistence; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; AIDA autotransporter complement(2589591..2595629) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614281.1 CDS IA1_12555 NC_022525.1 2596332 2603639 R may be involved in intestinal colonization; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(2596332..2603639) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614282.1 CDS IA1_12560 NC_022525.1 2603805 2605496 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2603805..2605496) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614283.1 CDS IA1_12565 NC_022525.1 2605521 2609384 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; outer membrane protein RatA complement(2605521..2609384) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614284.1 CDS IA1_12570 NC_022525.1 2609522 2610481 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2609522..2610481) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614285.1 CDS IA1_12575 NC_022525.1 2610539 2612731 R involved in invasion of epithelial cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; intimin complement(2610539..2612731) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614286.1 CDS IA1_12580 NC_022525.1 2613077 2613298 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2613077..2613298) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614287.1 CDS IA1_12585 NC_022525.1 2613387 2614901 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein Der complement(2613387..2614901) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614288.1 CDS IA1_12590 NC_022525.1 2614976 2616154 R Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane biogenesis protein BamB complement(2614976..2616154) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614289.1 CDS IA1_12595 NC_022525.1 2616165 2616785 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2616165..2616785) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614290.1 CDS hisS NC_022525.1 2616799 2618073 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidyl-tRNA synthetase complement(2616799..2618073) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614291.1 CDS IA1_12605 NC_022525.1 2618184 2619302 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2618184..2619302) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614292.1 CDS IA1_12610 NC_022525.1 2619329 2620333 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoskeleton protein rodZ complement(2619329..2620333) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614293.1 CDS IA1_12615 NC_022525.1 2620625 2621791 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S rRNA methyltransferase complement(2620625..2621791) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614294.1 CDS IA1_12620 NC_022525.1 2621998 2622429 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside diphosphate kinase complement(2621998..2622429) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614295.1 CDS IA1_12625 NC_022525.1 2622550 2623413 R Derived by automated computational analysis using gene prediction method: Protein Homology.; polyferredoxin complement(2622550..2623413) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614296.1 CDS IA1_12630 NC_022525.1 2623413 2624222 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit C complement(2623413..2624222) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614297.1 CDS IA1_12635 NC_022525.1 2624215 2624844 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 4Fe-4S ferredoxin complement(2624215..2624844) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614298.1 CDS IA1_12640 NC_022525.1 2624841 2627246 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DMSO reductase subunit A complement(2624841..2627246) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614299.1 CDS IA1_12645 NC_022525.1 2627375 2629690 R penicillin-insensitive transglycosylase/transpeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 1C complement(2627375..2629690) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614300.1 CDS IA1_12650 NC_022525.1 2629691 2634625 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2629691..2634625) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614301.1 CDS IA1_12655 NC_022525.1 2634707 2634835 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2634707..2634835) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614302.1 CDS IA1_12660 NC_022525.1 2634834 2635676 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 3-mercaptopyruvate sulfurtransferase 2634834..2635676 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614303.1 CDS IA1_12665 NC_022525.1 2635813 2635935 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2635813..2635935) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614304.1 CDS IA1_12670 NC_022525.1 2635923 2636591 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2635923..2636591 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614305.1 CDS IA1_12675 NC_022525.1 2637160 2637945 R enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology.; enhanced serine sensitivity protein SseB complement(2637160..2637945) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614306.1 CDS IA1_12680 NC_022525.1 2638046 2639329 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase B complement(2638046..2639329) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614307.1 CDS IA1_12685 NC_022525.1 2639383 2639583 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2639383..2639583) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614308.1 CDS IA1_12690 NC_022525.1 2639595 2639930 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2Fe-2S ferredoxin complement(2639595..2639930) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614309.1 CDS hscA NC_022525.1 2639932 2641782 R involved in the maturation of iron-sulfur cluster-containing proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone protein HscA complement(2639932..2641782) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614310.1 CDS hscB NC_022525.1 2641795 2642310 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; co-chaperone HscB complement(2641795..2642310) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614311.1 CDS iscA NC_022525.1 2642506 2642829 R forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster assembly protein complement(2642506..2642829) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614312.1 CDS IA1_12710 NC_022525.1 2642858 2643244 R Derived by automated computational analysis using gene prediction method: Protein Homology.; FeS cluster assembly scaffold IscU complement(2642858..2643244) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614313.1 CDS IA1_12715 NC_022525.1 2643272 2644486 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase complement(2643272..2644486) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614314.1 CDS IA1_12720 NC_022525.1 2644667 2645161 R regulates the expression of the iscRSUA operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2644667..2645161) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614315.1 CDS IA1_12725 NC_022525.1 2645321 2646052 R catalyzes the fromation of 2'O-methylated cytidine or 2'O-methylated uridine at position 32 in tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA methyltransferase complement(2645321..2646052) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614316.1 CDS IA1_12730 NC_022525.1 2646171 2646974 D Derived by automated computational analysis using gene prediction method: Protein Homology.; inositol monophosphatase 2646171..2646974 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614317.1 CDS IA1_12735 NC_022525.1 2647119 2647997 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2647119..2647997 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614318.1 CDS IA1_12740 NC_022525.1 2648179 2649222 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite reductase subunit A 2648179..2649222 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614319.1 CDS IA1_12745 NC_022525.1 2649226 2650044 D with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; Derived by automated computational analysis using gene prediction method: Protein Homology.; anaerobic sulfite reductase subunit B 2649226..2650044 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614320.1 CDS IA1_12750 NC_022525.1 2650055 2651068 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite reductase subunit C 2650055..2651068 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614321.1 CDS IA1_12755 NC_022525.1 2651069 2652055 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel transporter complement(2651069..2652055) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614322.1 CDS IA1_12760 NC_022525.1 2652046 2652714 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2652046..2652714) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614323.1 CDS IA1_12765 NC_022525.1 2652810 2654087 D Derived by automated computational analysis using gene prediction method: Protein Homology.; stationary phase inducible protein CsiE 2652810..2654087 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614324.1 CDS IA1_12770 NC_022525.1 2654082 2655221 R transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phenylpropionic acid MFS transporter complement(2654082..2655221) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614325.1 CDS glyA NC_022525.1 2655417 2656670 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine hydroxymethyltransferase complement(2655417..2656670) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614326.1 CDS IA1_12780 NC_022525.1 2656995 2658185 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 2656995..2658185 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614327.1 CDS IA1_12785 NC_022525.1 2658367 2659911 D regulates the cadBA operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2658367..2659911 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614328.1 CDS cadB NC_022525.1 2660272 2661603 D antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine:agmatine antiporter 2660272..2661603 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614329.1 CDS IA1_12795 NC_022525.1 2661686 2663830 D constitutive; catalyzes the formation of cadaverine from lysine; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine decarboxylase CadA 2661686..2663830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614330.1 CDS IA1_12800 NC_022525.1 2663886 2665346 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 2663886..2665346 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614331.1 CDS IA1_12805 NC_022525.1 2665395 2665733 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulatory protein P-II complement(2665395..2665733) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614332.1 CDS IA1_12810 NC_022525.1 2665810 2667147 R with GlrK is part of a two-component signal transduction system regulating glmY; Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator complement(2665810..2667147) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614333.1 CDS IA1_12815 NC_022525.1 2667144 2667830 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(2667144..2667830) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614334.1 CDS IA1_12820 NC_022525.1 2667910 2669352 R part of the GlrKR two-component signal transduction system involved in the regulation of glmY; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase complement(2667910..2669352) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614335.1 CDS IA1_12825 NC_022525.1 2669990 2673877 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphoribosylformylglycinamidine synthase complement(2669990..2673877) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614336.1 CDS IA1_12830 NC_022525.1 2674133 2675677 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2674133..2675677 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614337.1 CDS IA1_12835 NC_022525.1 2675728 2676279 R Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosine deaminase complement(2675728..2676279) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614338.1 CDS IA1_12840 NC_022525.1 2676304 2676939 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2676304..2676939) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614339.1 CDS IA1_12845 NC_022525.1 2676943 2678304 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIC complement(2676943..2678304) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614340.1 CDS IA1_12850 NC_022525.1 2678315 2679208 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramic acid-6-phosphate etherase complement(2678315..2679208) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614341.1 CDS IA1_12855 NC_022525.1 2679324 2680172 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2679324..2680172 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614342.1 CDS IA1_12860 NC_022525.1 2680211 2681128 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-dehydropantoate 2-reductase complement(2680211..2681128) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614343.1 CDS IA1_12865 NC_022525.1 2681150 2682346 R Derived by automated computational analysis using gene prediction method: Protein Homology.; permease complement(2681150..2682346) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614344.1 CDS IA1_12870 NC_022525.1 2682462 2683388 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2682462..2683388 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614345.1 CDS IA1_12875 NC_022525.1 2683426 2683686 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin 2683426..2683686 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614346.1 CDS acpS NC_022525.1 2683798 2684178 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4'-phosphopantetheinyl transferase complement(2683798..2684178) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614347.1 CDS IA1_12885 NC_022525.1 2684178 2684909 R involved in the de novo synthesis of pyridoxine (Vitamin B6); Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxine 5'-phosphate synthase complement(2684178..2684909) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614348.1 CDS recO NC_022525.1 2684921 2685649 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair protein RecO complement(2684921..2685649) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614349.1 CDS IA1_12895 NC_022525.1 2685661 2686566 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase Era complement(2685661..2686566) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614350.1 CDS rnc NC_022525.1 2686563 2687300 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease III complement(2686563..2687300) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614351.1 CDS IA1_12905 NC_022525.1 2687517 2688491 R catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; signal peptidase complement(2687517..2688491) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614352.1 CDS IA1_12910 NC_022525.1 2688508 2690307 R Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor 4 complement(2688508..2690307) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614353.1 CDS IA1_12915 NC_022525.1 2690559 2691038 R involved in the reduction of the SoxR iron-sulfur cluster; Derived by automated computational analysis using gene prediction method: Protein Homology.; SoxR reducing system protein RseC complement(2690559..2691038) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614354.1 CDS rseB NC_022525.1 2691035 2691991 R periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-sigma E factor complement(2691035..2691991) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614355.1 CDS IA1_12925 NC_022525.1 2691991 2692641 R Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-RNA polymerase sigma factor SigE complement(2691991..2692641) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614356.1 CDS IA1_12930 NC_022525.1 2692673 2693248 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor AlgU complement(2692673..2693248) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614357.1 CDS IA1_12935 NC_022525.1 2693673 2695295 D catalyzes the formation of oxaloacetate from L-aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-aspartate oxidase 2693673..2695295 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614358.1 CDS IA1_12940 NC_022525.1 2695280 2696017 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (adenine-N6)-methyltransferase complement(2695280..2696017) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614359.1 CDS IA1_12945 NC_022525.1 2696148 2697482 D facilitates an early step in the assembly of the 50S subunit of the ribosome; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 2696148..2697482 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614360.1 CDS IA1_12950 NC_022525.1 2697500 2698444 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(2697500..2698444) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614361.1 CDS IA1_12955 NC_022525.1 2698502 2699089 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine/O-acetylserine exporter 2698502..2699089 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614362.1 CDS IA1_12960 NC_022525.1 2699151 2699534 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; autonomous glycyl radical cofactor GrcA complement(2699151..2699534) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614363.1 CDS IA1_12965 NC_022525.1 2699853 2700542 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil-DNA glycosylase 2699853..2700542 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614364.1 CDS IA1_12970 NC_022525.1 2700658 2701695 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase complement(2700658..2701695) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614365.1 CDS IA1_12975 NC_022525.1 2701899 2702318 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin 2701899..2702318 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614366.1 CDS IA1_12980 NC_022525.1 2702391 2703071 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2702391..2703071 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614367.1 CDS IA1_12985 NC_022525.1 2703125 2705785 D catalyzes the acetylation of lysine; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein lysine acetyltransferase 2703125..2705785 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614368.1 CDS pssA NC_022525.1 2705900 2707255 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylserine synthase 2705900..2707255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614369.1 CDS IA1_12995 NC_022525.1 2707300 2707623 D required for high salt suppression of motility; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 2707300..2707623 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614370.1 CDS IA1_13000 NC_022525.1 2707620 2708921 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ketoglutarate transporter complement(2707620..2708921) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614371.1 CDS IA1_13005 NC_022525.1 2709025 2709480 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2709025..2709480) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614372.1 CDS IA1_13030 NC_022525.1 2715370 2717943 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protein disaggregation chaperone complement(2715370..2717943) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614373.1 CDS IA1_13035 NC_022525.1 2718073 2718804 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(2718073..2718804) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614374.1 CDS IA1_13040 NC_022525.1 2718801 2719781 R catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA/tRNA pseudouridine synthase A complement(2718801..2719781) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614375.1 CDS IA1_13045 NC_022525.1 2719913 2720650 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane biogenesis protein BamD 2719913..2720650 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614376.1 CDS IA1_13050 NC_022525.1 2720922 2721260 D associated with 30S ribosomal subunit; interferes with translation elongation; Derived by automated computational analysis using gene prediction method: Protein Homology.; translation inhibitor protein RaiA 2720922..2721260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614377.1 CDS pheA NC_022525.1 2721511 2722671 D catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional chorismate mutase/prephenate dehydratase 2721511..2722671 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614378.1 CDS IA1_13060 NC_022525.1 2722632 2723540 R Derived by automated computational analysis using gene prediction method: Protein Homology.; gluconolactonase complement(2722632..2723540) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614379.1 CDS tyrA NC_022525.1 2723598 2724719 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate mutase complement(2723598..2724719) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614380.1 CDS IA1_13070 NC_022525.1 2724729 2725799 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2724729..2725799) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614381.1 CDS IA1_13075 NC_022525.1 2726239 2726757 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2726239..2726757 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614382.1 CDS IA1_13080 NC_022525.1 2726750 2727970 D Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase 2726750..2727970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614383.1 CDS IA1_13085 NC_022525.1 2728127 2728474 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L19 complement(2728127..2728474) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614384.1 CDS trmD NC_022525.1 2728515 2729282 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (guanine-N1)-methyltransferase complement(2728515..2729282) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614385.1 CDS rimM NC_022525.1 2729327 2729875 R Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA-processing protein M complement(2729327..2729875) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614386.1 CDS IA1_13100 NC_022525.1 2729894 2730142 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S16 complement(2729894..2730142) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614387.1 CDS IA1_13105 NC_022525.1 2730456 2731817 R Derived by automated computational analysis using gene prediction method: Protein Homology.; signal recognition particle protein Srp54 complement(2730456..2731817) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614388.1 CDS IA1_13110 NC_022525.1 2731983 2732774 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2731983..2732774 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614389.1 CDS IA1_13115 NC_022525.1 2732881 2734080 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2732881..2734080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614390.1 CDS IA1_13120 NC_022525.1 2734201 2734806 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2734201..2734806 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614391.1 CDS IA1_13125 NC_022525.1 2734841 2735566 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein GrpE complement(2734841..2735566) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614392.1 CDS ppnK NC_022525.1 2735555 2736433 D catalyzes the phosphorylation of NAD to NADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; inorganic polyphosphate/ATP-NAD kinase 2735555..2736433 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614393.1 CDS IA1_13135 NC_022525.1 2736519 2738180 D Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase 2736519..2738180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614394.1 CDS IA1_13140 NC_022525.1 2738329 2738667 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane biogenesis protein BamE 2738329..2738667 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614395.1 CDS IA1_13145 NC_022525.1 2738833 2739123 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2738833..2739123) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614396.1 CDS IA1_13150 NC_022525.1 2739113 2739412 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2739113..2739412) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614397.1 CDS smpB NC_022525.1 2739693 2740220 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; single-stranded DNA-binding protein 2739693..2740220 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614398.1 CDS IA1_13160 NC_022525.1 2740835 2752309 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; large repetitive protein 2740835..2752309 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614399.1 CDS IA1_13165 NC_022525.1 2752374 2753783 D Derived by automated computational analysis using gene prediction method: Protein Homology.; TolC family type I secretion outer membrane protein 2752374..2753783 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614400.1 CDS IA1_13170 NC_022525.1 2753780 2755960 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein 2753780..2755960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614401.1 CDS IA1_13175 NC_022525.1 2755941 2757131 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; HlyD family secretion protein 2755941..2757131 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614402.1 CDS IA1_13180 NC_022525.1 2757761 2758957 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 2757761..2758957 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614403.1 CDS IA1_13185 NC_022525.1 2758970 2760127 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2758970..2760127 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614404.1 CDS IA1_13190 NC_022525.1 2760115 2761890 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2760115..2761890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614405.1 CDS IA1_13195 NC_022525.1 2762294 2762860 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phage polarity suppression protein complement(2762294..2762860) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614406.1 CDS IA1_13200 NC_022525.1 2762877 2763188 R in E. coli K-12 this is in prophage P2 remnant; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2762877..2763188) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614407.1 CDS IA1_13205 NC_022525.1 2763710 2763973 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2763710..2763973 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614408.1 CDS IA1_13210 NC_022525.1 2764213 2764938 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2764213..2764938) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614409.1 CDS IA1_13215 NC_022525.1 2765012 2765143 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2765012..2765143 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614410.1 CDS IA1_13220 NC_022525.1 2765826 2766365 R Derived by automated computational analysis using gene prediction method: Protein Homology.; repressor complement(2765826..2766365) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614411.1 CDS IA1_13225 NC_022525.1 2766433 2767953 R structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellin complement(2766433..2767953) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614412.1 CDS IA1_13230 NC_022525.1 2768327 2768890 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-invertase complement(2768327..2768890) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614413.1 CDS IA1_13235 NC_022525.1 2769582 2770697 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2769582..2770697 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614414.1 CDS IA1_13240 NC_022525.1 2770778 2774434 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATPase 2770778..2774434 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614415.1 CDS IA1_13245 NC_022525.1 2774544 2775788 D Derived by automated computational analysis using gene prediction method: Protein Homology.; enterochelin esterase 2774544..2775788 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614416.1 CDS IA1_13250 NC_022525.1 2775820 2776755 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 2775820..2776755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614417.1 CDS IA1_13255 NC_022525.1 2776797 2778971 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane receptor FepA complement(2776797..2778971) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614418.1 CDS IA1_13260 NC_022525.1 2780010 2781122 R Derived by automated computational analysis using gene prediction method: Protein Homology.; effector protein PipB2 complement(2780010..2781122) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614419.1 CDS IA1_13265 NC_022525.1 2781581 2782510 D Derived by automated computational analysis using gene prediction method: Protein Homology.; VirG localization protein VirK 2781581..2782510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614420.1 CDS IA1_13270 NC_022525.1 2782803 2783699 D induced within macrophages; necessary for the resistance to antimicrobials; Derived by automated computational analysis using gene prediction method: Protein Homology.; antimicrobial resistance protein Mig-14 2782803..2783699 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614421.1 CDS IA1_13275 NC_022525.1 2784215 2784328 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2784215..2784328 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614422.1 CDS IA1_13280 NC_022525.1 2784421 2785434 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel transporter complement(2784421..2785434) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614423.1 CDS IA1_13285 NC_022525.1 2785567 2786982 R Derived by automated computational analysis using gene prediction method: Protein Homology.; signal transduction histidine kinase complement(2785567..2786982) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614424.1 CDS IA1_13290 NC_022525.1 2786969 2787643 R transcriptional activator of tricarboxylate transport system genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2786969..2787643) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614425.1 CDS IA1_13295 NC_022525.1 2787798 2788775 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tricarboxylic transport membrane protein 2787798..2788775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614426.1 CDS IA1_13300 NC_022525.1 2788790 2789221 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2788790..2789221 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614427.1 CDS IA1_13305 NC_022525.1 2789232 2790746 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter TctA 2789232..2790746 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614428.1 CDS IA1_13310 NC_022525.1 2790838 2790954 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2790838..2790954) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614429.1 CDS IA1_13315 NC_022525.1 2791050 2792027 D in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon starvation induced protein 2791050..2792027 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614430.1 CDS IA1_13320 NC_022525.1 2792053 2793321 D catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyglutarate oxidase 2792053..2793321 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614431.1 CDS gabD NC_022525.1 2793343 2794791 D catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate-semialdehyde dehdyrogenase 2793343..2794791 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614432.1 CDS IA1_13330 NC_022525.1 2794806 2796089 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-aminobutyrate aminotransferase 2794806..2796089 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614433.1 CDS IA1_13335 NC_022525.1 2796219 2797619 D Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-aminobutyrate transporter 2796219..2797619 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614434.1 CDS IA1_13340 NC_022525.1 2797661 2798338 D regulator of gab gene expression; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2797661..2798338 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614435.1 CDS IA1_13345 NC_022525.1 2798360 2798809 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidoglycan-binding protein LysM complement(2798360..2798809) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614436.1 CDS IA1_13350 NC_022525.1 2798909 2799067 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2798909..2799067) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614437.1 CDS IA1_13355 NC_022525.1 2799250 2799549 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2799250..2799549 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614438.1 CDS IA1_13360 NC_022525.1 2799559 2800086 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2799559..2800086 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614439.1 CDS IA1_13365 NC_022525.1 2800165 2800344 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2800165..2800344 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614440.1 CDS IA1_13370 NC_022525.1 2800434 2800835 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein complement(2800434..2800835) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614441.1 CDS IA1_13375 NC_022525.1 2801534 2801983 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2801534..2801983 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614442.1 CDS IA1_13380 NC_022525.1 2802018 2802368 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2802018..2802368) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614443.1 CDS IA1_13385 NC_022525.1 2802530 2802856 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2802530..2802856 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614444.1 CDS IA1_13390 NC_022525.1 2802940 2804274 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator complement(2802940..2804274) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614445.1 CDS IA1_13395 NC_022525.1 2804363 2804794 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alkylhydroperoxidase 2804363..2804794 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614446.1 CDS IA1_13400 NC_022525.1 2805066 2805311 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glutaredoxin 2805066..2805311 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614447.1 CDS nrdI NC_022525.1 2805308 2805718 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide reductase stimulatory protein 2805308..2805718 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614448.1 CDS IA1_13410 NC_022525.1 2805691 2807835 D Catalyzes the rate-limiting step in dNTP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit alpha 2805691..2807835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614449.1 CDS IA1_13415 NC_022525.1 2807846 2808805 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit beta 2807846..2808805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614450.1 CDS IA1_13420 NC_022525.1 2809160 2810362 D with ProWX is involved in the high-affinity uptake of glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter ATP-binding protein 2809160..2810362 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614451.1 CDS IA1_13425 NC_022525.1 2810355 2811419 D with ProVX is involved in the high-affinity uptake of glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine betaine transporter membrane protein 2810355..2811419 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614452.1 CDS proX NC_022525.1 2811489 2812484 D with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter substrate-binding protein 2811489..2812484 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614453.1 CDS IA1_13435 NC_022525.1 2812649 2813833 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 2812649..2813833 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614454.1 CDS IA1_13440 NC_022525.1 2814330 2814860 D DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2814330..2814860 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614455.1 CDS IA1_13445 NC_022525.1 2814987 2816159 D with ErmA and TolC forms a multidrug efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2814987..2816159 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614456.1 CDS emrB NC_022525.1 2816176 2817714 D multidrug MFS transporte; with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein B 2816176..2817714 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614457.1 CDS IA1_13455 NC_022525.1 2817763 2819133 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycoporin complement(2817763..2819133) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614458.1 CDS IA1_13460 NC_022525.1 2819479 2819994 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-ribosylhomocysteinase complement(2819479..2819994) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614459.1 CDS IA1_13465 NC_022525.1 2820144 2821700 R involved in the first step of glutathione biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate--cysteine ligase complement(2820144..2821700) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614460.1 CDS IA1_13470 NC_022525.1 2821777 2822202 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2821777..2822202) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614461.1 CDS IA1_13475 NC_022525.1 2822199 2822765 R YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-1-P/6-phosphogluconate phosphatase complement(2822199..2822765) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614462.1 CDS IA1_13505 NC_022525.1 2824159 2824344 R affects carbohydrate metabolism; has regulatory role in many processes; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; carbon storage regulator complement(2824159..2824344) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614463.1 CDS IA1_13510 NC_022525.1 2824579 2827209 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alanyl-tRNA synthetase complement(2824579..2827209) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614464.1 CDS recX NC_022525.1 2827445 2827945 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombination protein RecX complement(2827445..2827945) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614465.1 CDS recA NC_022525.1 2828062 2829123 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase RecA complement(2828062..2829123) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614466.1 CDS IA1_13525 NC_022525.1 2829208 2829708 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2829208..2829708) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614467.1 CDS IA1_13530 NC_022525.1 2830184 2831263 R membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein hydrolase B complement(2830184..2831263) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614468.1 CDS srlA NC_022525.1 2831517 2832080 D catalyzes the phosphorylation of incoming sugar substrates along with their translocation across the cell membrane; the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sorbitol transporter subunit IIC 2831517..2832080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614469.1 CDS srlE NC_022525.1 2832077 2833048 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; subunit IIB transfers the phosphoryl group to the substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sorbitol transporter subunit IIB 2832077..2833048 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614470.1 CDS IA1_13545 NC_022525.1 2833060 2833422 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sorbitol transporter subunit IIA 2833060..2833422 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614471.1 CDS IA1_13550 NC_022525.1 2833434 2834213 D catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sorbitol-6-phosphate dehydrogenase 2833434..2834213 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614472.1 CDS IA1_13555 NC_022525.1 2834289 2834648 D regulator for glucitol utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2834289..2834648 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614473.1 CDS srlR NC_022525.1 2834846 2835619 D regulates genes involved in glucitol utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2834846..2835619 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614474.1 CDS IA1_13565 NC_022525.1 2835612 2836577 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose 5-phosphate isomerase 2835612..2836577 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614475.1 CDS IA1_13570 NC_022525.1 2836574 2838094 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2836574..2838094) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614476.1 CDS IA1_13575 NC_022525.1 2838280 2839719 D detoxifies nitric oxide using NADH; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; nitric oxide reductase 2838280..2839719 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614477.1 CDS IA1_13580 NC_022525.1 2839716 2840849 D Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:flavorubredoxin oxidoreductase 2839716..2840849 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614478.1 CDS IA1_13585 NC_022525.1 2840946 2843186 R carbamoyltransferase; involved in the formation of the cyanate group of hydrogenase; catalyzes the formation of carbamoyladenylate from carbamoylphosphate and then transfers the carbamoyl group to HypE; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamoyl phosphate phosphatase complement(2840946..2843186) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614479.1 CDS IA1_13590 NC_022525.1 2843332 2843877 R involved in electron transport from formate to hydrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-H ferredoxin subunit complement(2843332..2843877) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614480.1 CDS IA1_13595 NC_022525.1 2844078 2844887 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2844078..2844887) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614481.1 CDS hycI NC_022525.1 2844914 2845384 R involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3 maturation protease complement(2844914..2845384) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614482.1 CDS IA1_13605 NC_022525.1 2845377 2845787 R required for the maturation of the formate hydrogenlyase complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase maturation protein HycH complement(2845377..2845787) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614483.1 CDS IA1_13610 NC_022525.1 2845784 2846551 R Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase subunit 7 complement(2845784..2846551) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614484.1 CDS IA1_13615 NC_022525.1 2846551 2847093 R electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase complex iron-sulfur subunit complement(2846551..2847093) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614485.1 CDS hycE NC_022525.1 2847103 2848812 R formate hydrogenlyase subunit 5; HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3 large subunit complement(2847103..2848812) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614486.1 CDS hycD NC_022525.1 2848830 2849753 R formate hydrogenlyase subunit 4; HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3 membrane subunit complement(2848830..2849753) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614487.1 CDS IA1_13630 NC_022525.1 2849756 2851582 R catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); Derived by automated computational analysis using gene prediction method: GeneMarkS+.; formate hydrogenlyase subunit 3 complement(2849756..2851582) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614488.1 CDS IA1_13635 NC_022525.1 2851582 2852190 R Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase subunit 2 complement(2851582..2852190) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614489.1 CDS IA1_13640 NC_022525.1 2852336 2852797 R regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase regulatory protein HycA complement(2852336..2852797) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614490.1 CDS hypA NC_022525.1 2853007 2853363 D plays a role in hydrogenase nickel cofactor insertion; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase nickel incorporation protein 2853007..2853363 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614491.1 CDS IA1_13650 NC_022525.1 2853432 2854304 D GTP hydrolase involved in nickel liganding into hydrogenases; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hydrogenase nickel incorporation protein HypB 2853432..2854304 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614492.1 CDS IA1_13655 NC_022525.1 2854295 2854567 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 accessory protein HypG 2854295..2854567 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614493.1 CDS IA1_13660 NC_022525.1 2854567 2855688 D necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hydrogenase formation protein HypD 2854567..2855688 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614494.1 CDS IA1_13665 NC_022525.1 2855685 2856695 D hydrogenase isoenzymes formation protein; involved in the formation of the cyanate group of the large subunit of the hydrogenase; catalyzes the formation of thiocyanate from thiocarbamate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; carbamoyl dehydratase 2855685..2856695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614495.1 CDS IA1_13670 NC_022525.1 2856914 2858992 D regulates the expression of formate dehydrogenase H and hydrogenase-3 structural genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2856914..2858992 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614496.1 CDS IA1_13675 NC_022525.1 2859054 2859398 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2859054..2859398) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614497.1 CDS IA1_13680 NC_022525.1 2859580 2860497 D Derived by automated computational analysis using gene prediction method: Protein Homology.; iron ABC transporter substrate-binding protein 2859580..2860497 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614498.1 CDS IA1_13685 NC_022525.1 2860494 2861315 D with SitACD is involved in the transport of manganese and iron; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; manganese transporter 2860494..2861315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614499.1 CDS IA1_13690 NC_022525.1 2861312 2862172 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2861312..2862172 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614500.1 CDS IA1_13695 NC_022525.1 2862163 2863011 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2862163..2863011 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614501.1 CDS yopJ NC_022525.1 2863110 2863976 R involved in the survival of the bacteria in host cells; blocks cytokine production and induces apoptosis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; effector protein YopJ complement(2863110..2863976) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614502.1 CDS IA1_13705 NC_022525.1 2864179 2864934 R activates Salmonella pathogenicity island 4 genes and weakly represses Salmonella pathogenicity island 1 genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2864179..2864934) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614503.1 CDS IA1_13710 NC_022525.1 2865319 2866206 R regulates the expression of the invasion-associated type III secretion system in Salmonella pathogenicity island 1; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2865319..2866206) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614504.1 CDS IA1_13715 NC_022525.1 2866551 2867003 R expressed during and after host cell invasion; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system effector protein OrgC complement(2866551..2867003) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614505.1 CDS IA1_13720 NC_022525.1 2867000 2867680 R oxygen regulated; required for internalization into the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; invasion protein OrgB complement(2867000..2867680) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614506.1 CDS IA1_13725 NC_022525.1 2867637 2868215 R oxygen regulated; required for internalization into the host cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; invasion protein OrgA complement(2867637..2868215) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614507.1 CDS IA1_13730 NC_022525.1 2868208 2868966 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2868208..2868966) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614508.1 CDS IA1_13735 NC_022525.1 2868963 2869268 R may be involved in capping the needle substructure; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system needle complex protein PrgJ complement(2868963..2869268) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614509.1 CDS IA1_13740 NC_022525.1 2869287 2869529 R with InvG, PrgH, and Prg K makes up the membrane spanning needle complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system needle complex protein PrgI complement(2869287..2869529) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614510.1 CDS IA1_13745 NC_022525.1 2869554 2870732 R with InvG, PrgI, and Prg K makes up the membrane spanning needle complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system needle complex protein PrgH complement(2869554..2870732) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614511.1 CDS IA1_13750 NC_022525.1 2871048 2871977 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2871048..2871977 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614512.1 CDS IA1_13755 NC_022525.1 2873068 2874729 D IagA; HilA; activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; Derived by automated computational analysis using gene prediction method: Protein Homology.; invasion protein regulator 2873068..2874729 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614513.1 CDS IA1_13760 NC_022525.1 2874747 2875229 D Derived by automated computational analysis using gene prediction method: Protein Homology.; invasion protein IagB 2874747..2875229 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614514.1 CDS IA1_13765 NC_022525.1 2875283 2876914 R GTP-activating protein/tyrosine phosphatase; facilitates bacterial survival in host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 1 effector protein StpP complement(2875283..2876914) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614515.1 CDS IA1_13770 NC_022525.1 2876901 2877293 R type III secretion system chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone protein SicP complement(2876901..2877293) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614516.1 CDS IA1_13775 NC_022525.1 2877320 2877544 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2877320..2877544) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614517.1 CDS iacP NC_022525.1 2877624 2877872 R invasion-associated ACP; carries the fatty acid chain in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl carrier protein complement(2877624..2877872) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614518.1 CDS IA1_13785 NC_022525.1 2877891 2879948 R cell invasion protein A; actin-binding; required for entry of the Salmonella into the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 1 effector protein SipA complement(2877891..2879948) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614519.1 CDS IA1_13790 NC_022525.1 2879967 2880998 R involved in the transport of effector protein by the type III secretion system of Salmonella pathogenicity island 1; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell invasion protein SipD complement(2879967..2880998) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614520.1 CDS IA1_13795 NC_022525.1 2881069 2882298 R cell invasion protein C; required for entry of the bacteria into the host cell; binds to actin; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 1 effector protein SipC complement(2881069..2882298) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614521.1 CDS IA1_13800 NC_022525.1 2882326 2884107 R cell invasion protein B; required for entry of the bacteria into the host cell; induces apoptosis in macrophages; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 1 effector protein SipB complement(2882326..2884107) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614522.1 CDS IA1_13805 NC_022525.1 2884110 2884607 R surface presentation of antigen protein SpaT; involved in the stabilization of SipB and SipC; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone protein SicA complement(2884110..2884607) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614523.1 CDS IA1_13810 NC_022525.1 2884745 2885815 R Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SpaS complement(2884745..2885815) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614524.1 CDS IA1_13815 NC_022525.1 2885802 2886593 R involved in the surface presentation of antigens needed for the invasion of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SpaR complement(2885802..2886593) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614525.1 CDS IA1_13820 NC_022525.1 2886597 2886857 R involved in the surface presentation of antigens needed for the invasion of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SpaQ complement(2886597..2886857) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614526.1 CDS IA1_13825 NC_022525.1 2886883 2887557 R Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein complement(2886883..2887557) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614527.1 CDS IA1_13830 NC_022525.1 2887547 2888458 R involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SpaO complement(2887547..2888458) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614528.1 CDS spaN NC_022525.1 2888458 2889468 R involved in the surface presentation of antigens needed for the invasion of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; antigen presentation protein SpaN complement(2888458..2889468) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614529.1 CDS spaM NC_022525.1 2889468 2889911 R involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein SpaM complement(2889468..2889911) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614530.1 CDS IA1_13845 NC_022525.1 2889889 2891184 R Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system ATPase complement(2889889..2891184) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614531.1 CDS spaK NC_022525.1 2891181 2891588 R involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system chaperone SpaK complement(2891181..2891588) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614532.1 CDS IA1_13855 NC_022525.1 2891612 2893669 R Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein InvA complement(2891612..2893669) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614533.1 CDS IA1_13860 NC_022525.1 2893694 2894812 R involved in regulation of genes necessary for the entry of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein InvE complement(2893694..2894812) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614534.1 CDS IA1_13865 NC_022525.1 2894809 2896497 R may be involved in the export or assemby of proteins involved in the entry of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system outer membrane pore InvG complement(2894809..2896497) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614535.1 CDS IA1_13870 NC_022525.1 2896494 2897243 R involved in the expression of virulence genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2896494..2897243) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614536.1 CDS IA1_13875 NC_022525.1 2897600 2898043 D involved in the secretion and localization proteins necessary for the entry of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; invasion protein 2897600..2898043 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614537.1 CDS IA1_13880 NC_022525.1 2898474 2898923 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2898474..2898923 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614538.1 CDS IA1_13885 NC_022525.1 2898923 2899255 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2898923..2899255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614539.1 CDS IA1_13890 NC_022525.1 2899528 2899854 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2899528..2899854) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614540.1 CDS IA1_13900 NC_022525.1 2900543 2900833 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter 2900543..2900833 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614541.1 CDS IA1_13905 NC_022525.1 2900830 2901357 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase 2900830..2901357 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614542.1 CDS IA1_13910 NC_022525.1 2901430 2901570 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2901430..2901570) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614543.1 CDS IA1_13915 NC_022525.1 2902072 2902728 D Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine protein phosphatase 2902072..2902728 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614544.1 CDS IA1_13920 NC_022525.1 2902973 2903467 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(2902973..2903467) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614545.1 CDS IA1_13925 NC_022525.1 2903494 2904162 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(2903494..2904162) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614546.1 CDS IA1_13930 NC_022525.1 2904737 2905147 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2904737..2905147) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614547.1 CDS IA1_13935 NC_022525.1 2905306 2907873 D This protein performs the mismatch recognition step during the DNA repair process; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA mismatch repair protein MutS 2905306..2907873 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614548.1 CDS IA1_13940 NC_022525.1 2907929 2908309 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2907929..2908309) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614549.1 CDS IA1_13945 NC_022525.1 2908306 2909514 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(2908306..2909514) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614550.1 CDS IA1_13950 NC_022525.1 2909623 2910534 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LysR family transcriptional regulator 2909623..2910534 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614551.1 CDS IA1_13955 NC_022525.1 2910576 2912072 R Derived by automated computational analysis using gene prediction method: Protein Homology.; gluconate permease complement(2910576..2912072) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614552.1 CDS IA1_13960 NC_022525.1 2912069 2913019 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2912069..2913019) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614553.1 CDS IA1_13965 NC_022525.1 2913059 2913835 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2913059..2913835) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614554.1 CDS IA1_13970 NC_022525.1 2913840 2914478 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aldolase complement(2913840..2914478) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614555.1 CDS IA1_13975 NC_022525.1 2914475 2915737 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2914475..2915737) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614556.1 CDS IA1_13980 NC_022525.1 2915731 2916654 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(2915731..2916654) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614557.1 CDS IA1_13985 NC_022525.1 2916851 2917615 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 2916851..2917615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614558.1 CDS IA1_13990 NC_022525.1 2917634 2918038 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2917634..2918038) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614559.1 CDS IA1_13995 NC_022525.1 2918209 2918802 D catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2918209..2918802 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614560.1 CDS IA1_14000 NC_022525.1 2918802 2920229 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phenolic acid decarboxylase subunit C 2918802..2920229 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614561.1 CDS IA1_14005 NC_022525.1 2920240 2920476 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxybenzoate decarboxylase 2920240..2920476 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614562.1 CDS IA1_14010 NC_022525.1 2920521 2921513 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor RpoS complement(2920521..2921513) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614563.1 CDS IA1_14015 NC_022525.1 2921576 2922535 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2921576..2922535) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614564.1 CDS pcm NC_022525.1 2922885 2923511 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-L-isoaspartate O-methyltransferase complement(2922885..2923511) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614565.1 CDS surE NC_022525.1 2923505 2924266 R broad specificity 5'(3')-nucleotidase and polyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.; stationary phase survival protein SurE complement(2923505..2924266) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614566.1 CDS truD NC_022525.1 2924247 2925296 R catalyzes the modification of U13 in tRNA(Glu); Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase D complement(2924247..2925296) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614567.1 CDS ispF NC_022525.1 2925293 2925772 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(2925293..2925772) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614568.1 CDS IA1_14040 NC_022525.1 2925772 2926482 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(2925772..2926482) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614569.1 CDS ftsB NC_022525.1 2926501 2926812 R forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsB complement(2926501..2926812) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614570.1 CDS IA1_14050 NC_022525.1 2927003 2927281 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(2927003..2927281) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614571.1 CDS IA1_14055 NC_022525.1 2927377 2927982 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylylsulfate kinase complement(2927377..2927982) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614572.1 CDS cysN NC_022525.1 2927969 2929408 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate adenylyltransferase subunit 1 complement(2927969..2929408) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614573.1 CDS IA1_14065 NC_022525.1 2929418 2930326 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate adenylyltransferase subunit 2 complement(2929418..2930326) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614574.1 CDS IA1_14070 NC_022525.1 2930577 2931623 D catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; Derived by automated computational analysis using gene prediction method: Protein Homology.; alkaline phosphatase isozyme conversion aminopeptidase 2930577..2931623 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614575.1 CDS IA1_14075 NC_022525.1 2933413 2933709 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ssRNA endonuclease complement(2933413..2933709) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614576.1 CDS IA1_14080 NC_022525.1 2933706 2934626 R Derived by automated computational analysis using gene prediction method: Protein Homology.; CRISPR-associated protein Cas1 complement(2933706..2934626) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614577.1 CDS IA1_14085 NC_022525.1 2934623 2935273 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; CRISPR-associated protein Cas6 complement(2934623..2935273) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614578.1 CDS IA1_14090 NC_022525.1 2935255 2936001 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cytoplasmic protein complement(2935255..2936001) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614579.1 CDS IA1_14095 NC_022525.1 2936012 2937070 R Derived by automated computational analysis using gene prediction method: Protein Homology.; CRISPR-associated protein Cse4 complement(2936012..2937070) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614580.1 CDS IA1_14100 NC_022525.1 2937084 2937644 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase complement(2937084..2937644) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614581.1 CDS IA1_14105 NC_022525.1 2937641 2939197 R Derived by automated computational analysis using gene prediction method: Protein Homology.; CRISPR-associated protein CasA complement(2937641..2939197) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614582.1 CDS IA1_14110 NC_022525.1 2939209 2941872 R Derived by automated computational analysis using gene prediction method: Protein Homology.; helicase complement(2939209..2941872) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614583.1 CDS IA1_14115 NC_022525.1 2942188 2943270 D involved in bacterial survival in the host cell; involved in macrophage replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; pathogenicity island 1 effector protein SopD 2942188..2943270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614584.1 CDS IA1_14120 NC_022525.1 2943358 2944092 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoadenosine phosphosulfate reductase complement(2943358..2944092) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614585.1 CDS IA1_14125 NC_022525.1 2944194 2945906 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sulfite reductase subunit beta complement(2944194..2945906) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614586.1 CDS cysJ NC_022525.1 2945906 2947705 R catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sulfite reductase subunit alpha complement(2945906..2947705) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614587.1 CDS IA1_14135 NC_022525.1 2948140 2948502 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 6-carboxy-5,6,7,8-tetrahydropterin synthase 2948140..2948502 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614588.1 CDS IA1_14140 NC_022525.1 2948590 2949018 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2948590..2949018) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614589.1 CDS IA1_14145 NC_022525.1 2949041 2949388 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; beta-lactamase complement(2949041..2949388) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614590.1 CDS IA1_14150 NC_022525.1 2950970 2951641 R Derived by automated computational analysis using gene prediction method: Protein Homology.; coenzyme PQQ biosynthesis protein complement(2950970..2951641) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614591.1 CDS eno NC_022525.1 2951777 2953075 R catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; enolase complement(2951777..2953075) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614592.1 CDS pyrG NC_022525.1 2953158 2954795 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; Derived by automated computational analysis using gene prediction method: Protein Homology.; CTP synthetase complement(2953158..2954795) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614593.1 CDS mazG NC_022525.1 2955023 2955823 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate pyrophosphohydrolase complement(2955023..2955823) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614594.1 CDS IA1_14170 NC_022525.1 2956429 2957016 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 2956429..2957016 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614595.1 CDS IA1_14175 NC_022525.1 2957150 2959795 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial usher protein 2957150..2959795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614596.1 CDS IA1_14180 NC_022525.1 2959808 2960581 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone protein StdC 2959808..2960581 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614597.1 CDS IA1_14185 NC_022525.1 2960601 2961107 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2960601..2961107 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614598.1 CDS IA1_14190 NC_022525.1 2961122 2961592 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein SteE 2961122..2961592 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614599.1 CDS IA1_14195 NC_022525.1 2961589 2962125 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 2961589..2962125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614600.1 CDS IA1_14200 NC_022525.1 2962180 2963211 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2962180..2963211 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614601.1 CDS IA1_14205 NC_022525.1 2963348 2963530 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2963348..2963530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614602.1 CDS IA1_14210 NC_022525.1 2964785 2964922 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2964785..2964922 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614603.1 CDS IA1_14215 NC_022525.1 2965228 2965524 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; plasmid stabilization protein ParE complement(2965228..2965524) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614604.1 CDS IA1_14220 NC_022525.1 2965490 2965777 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2965490..2965777) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614605.1 CDS relA NC_022525.1 2965930 2968164 R (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP pyrophosphokinase complement(2965930..2968164) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614606.1 CDS rumA NC_022525.1 2968216 2969511 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(2968216..2969511) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614607.1 CDS IA1_14235 NC_022525.1 2969569 2972325 D part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase 2969569..2972325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614608.1 CDS IA1_14240 NC_022525.1 2972369 2973511 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerate kinase complement(2972369..2973511) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614609.1 CDS gudD NC_022525.1 2973589 2974929 R catalyzes the formation of 5-keto-4-deoxy-D-glucarate from glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate dehydratase complement(2973589..2974929) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614610.1 CDS gudD NC_022525.1 2974950 2976290 R catalyzes the formation of 5-keto-4-deoxy-D-glucarate from glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate dehydratase complement(2974950..2976290) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614611.1 CDS IA1_14255 NC_022525.1 2976287 2977645 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate transporter complement(2976287..2977645) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614612.1 CDS IA1_14260 NC_022525.1 2978125 2978574 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavodoxin complement(2978125..2978574) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614613.1 CDS IA1_14265 NC_022525.1 2978593 2979375 R catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase C complement(2978593..2979375) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614614.1 CDS IA1_14270 NC_022525.1 2979375 2979761 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2979375..2979761) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614615.1 CDS IA1_14275 NC_022525.1 2980316 2980861 R SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; Derived by automated computational analysis using gene prediction method: Protein Homology.; SecY interacting protein Syd complement(2980316..2980861) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614616.1 CDS queF NC_022525.1 2980930 2981778 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 7-cyano-7-deazaguanine reductase 2980930..2981778 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614617.1 CDS IA1_14285 NC_022525.1 2981891 2983255 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LOG family protein ygdH 2981891..2983255 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614618.1 CDS IA1_14290 NC_022525.1 2983820 2985109 D Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine transporter 2983820..2985109 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614619.1 CDS IA1_14295 NC_022525.1 2985168 2986535 D catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-serine dehydratase 2985168..2986535 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614620.1 CDS IA1_14300 NC_022525.1 2986706 2987461 D similar to flap endonuclease; FEN family; protein from E. coli does not have exonuclease activity; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; endonuclease 2986706..2987461 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614621.1 CDS IA1_14305 NC_022525.1 2987553 2988701 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-1,2-propanediol oxidoreductase complement(2987553..2988701) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614622.1 CDS IA1_14310 NC_022525.1 2988718 2989365 R catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fuculose phosphate aldolase complement(2988718..2989365) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614623.1 CDS IA1_14315 NC_022525.1 2989921 2991237 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; L-fucose transporter 2989921..2991237 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614624.1 CDS fucI NC_022525.1 2991269 2993044 D catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; Derived by automated computational analysis using gene prediction method: Protein Homology.; fucose isomerase 2991269..2993044 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614625.1 CDS IA1_14325 NC_022525.1 2993145 2994563 D Derived by automated computational analysis using gene prediction method: Protein Homology.; L-fuculokinase 2993145..2994563 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614626.1 CDS fucU NC_022525.1 2994565 2994987 D catalyzes the interconversion of alpha-L-fucose to beta-L-fucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-fucose mutarotase 2994565..2994987 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614627.1 CDS IA1_14335 NC_022525.1 2995045 2995755 D regulates expression of genes involved in L-fucose utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2995045..2995755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614628.1 CDS IA1_14340 NC_022525.1 2995814 2996914 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(2995814..2996914) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614629.1 CDS IA1_14345 NC_022525.1 2996907 2997302 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2996907..2997302) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614630.1 CDS IA1_14350 NC_022525.1 2997321 2998238 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2997321..2998238) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614631.1 CDS IA1_14355 NC_022525.1 2998585 2998812 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2998585..2998812) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614632.1 CDS IA1_14360 NC_022525.1 2999005 3000210 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine sulfinate desulfinase 2999005..3000210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614633.1 CDS IA1_14365 NC_022525.1 3000210 3000653 D binds and activates CsdA; Fe-S protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; CsdA-binding activator 3000210..3000653 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614634.1 CDS IA1_14370 NC_022525.1 3000926 3001840 D Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 3000926..3001840 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614635.1 CDS IA1_14375 NC_022525.1 3001892 3002698 R accepts sulfur from CsdA; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur acceptor protein CsdL complement(3001892..3002698) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614636.1 CDS mltA NC_022525.1 3002808 3003905 R membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein transglycosylase A complement(3002808..3003905) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614637.1 CDS amiC NC_022525.1 3004406 3005659 R hydrolyzes the bond between N-acetylmuramic acid and amino acid residues in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase complement(3004406..3005659) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614638.1 CDS IA1_14400 NC_022525.1 3005892 3007223 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylglutamate synthase 3005892..3007223 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614639.1 CDS recD NC_022525.1 3007326 3009161 R helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; exonuclease V subunit alpha complement(3007326..3009161) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614640.1 CDS recB NC_022525.1 3009158 3012703 R helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; exonuclease V subunit beta complement(3009158..3012703) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614641.1 CDS IA1_14415 NC_022525.1 3012696 3015584 R degrades small peptides; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; protease complement(3012696..3015584) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614642.1 CDS recC NC_022525.1 3015762 3019133 R catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease V subunit gamma complement(3015762..3019133) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614643.1 CDS IA1_14425 NC_022525.1 3019149 3019469 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3019149..3019469) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614644.1 CDS IA1_14430 NC_022525.1 3019454 3019861 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3019454..3019861) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614645.1 CDS IA1_14435 NC_022525.1 3019858 3020382 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3019858..3020382) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614646.1 CDS IA1_14440 NC_022525.1 3020412 3020882 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3020412..3020882) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614647.1 CDS IA1_14445 NC_022525.1 3020892 3021074 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3020892..3021074 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614648.1 CDS IA1_14450 NC_022525.1 3021067 3021861 R Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidylate synthase complement(3021067..3021861) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614649.1 CDS IA1_14455 NC_022525.1 3021868 3022743 R Derived by automated computational analysis using gene prediction method: Protein Homology.; prolipoprotein diacylglyceryl transferase complement(3021868..3022743) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614650.1 CDS IA1_14460 NC_022525.1 3022959 3025205 R member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate-protein phosphotransferase complement(3022959..3025205) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614651.1 CDS IA1_14465 NC_022525.1 3025218 3025748 R hydrolyzes diadenosine polyphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA pyrophosphohydrolase complement(3025218..3025748) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614652.1 CDS IA1_14470 NC_022525.1 3026431 3027126 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA mismatch repair protein 3026431..3027126 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614653.1 CDS IA1_14475 NC_022525.1 3027308 3028021 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3027308..3028021 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614654.1 CDS IA1_14480 NC_022525.1 3028191 3028409 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3028191..3028409 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614655.1 CDS tas NC_022525.1 3028600 3029640 D complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldo-keto reductase 3028600..3029640 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614656.1 CDS IA1_14490 NC_022525.1 3029727 3030929 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysophospholipid transporter LplT complement(3029727..3030929) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614657.1 CDS IA1_14495 NC_022525.1 3030922 3033081 R Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-acyl-glycerophospho-ethanolamine acyltransferase complement(3030922..3033081) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614658.1 CDS IA1_14500 NC_022525.1 3033674 3034702 D controls transcription of galETKM; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3033674..3034702 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614659.1 CDS IA1_14505 NC_022525.1 3034716 3035735 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LacI family transcriptional regulator 3034716..3035735 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614660.1 CDS IA1_14510 NC_022525.1 3035745 3037007 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminopimelate decarboxylase complement(3035745..3037007) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614661.1 CDS IA1_14515 NC_022525.1 3037125 3038060 D activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3037125..3038060 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614662.1 CDS IA1_14520 NC_022525.1 3038032 3038739 R Derived by automated computational analysis using gene prediction method: Protein Homology.; racemase complement(3038032..3038739) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614663.1 CDS IA1_14525 NC_022525.1 3038852 3040270 R Derived by automated computational analysis using gene prediction method: Protein Homology.; D-galactose transporter complement(3038852..3040270) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614664.1 CDS IA1_14530 NC_022525.1 3040624 3041385 R catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-deoxy-D-gluconate 3-dehydrogenase complement(3040624..3041385) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614665.1 CDS IA1_14535 NC_022525.1 3041442 3042278 R 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 5-keto-4-deoxyuronate isomerase complement(3041442..3042278) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614666.1 CDS IA1_14540 NC_022525.1 3042708 3043916 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA acetyltransferase complement(3042708..3043916) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614667.1 CDS IA1_14545 NC_022525.1 3044009 3044872 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3044009..3044872) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614668.1 CDS IA1_14550 NC_022525.1 3044976 3045431 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Na(+)-translocating NADH-quinone reductase subunit E 3044976..3045431 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614669.1 CDS IA1_14555 NC_022525.1 3045573 3046802 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3045573..3046802 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614670.1 CDS IA1_14560 NC_022525.1 3046833 3047105 R DNA-binding; binds the RcnA promotor; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3046833..3047105) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614671.1 CDS IA1_14565 NC_022525.1 3047227 3048087 D membrane protein conferring nickel and cobalt resistance; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cobalt transporter 3047227..3048087 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614672.1 CDS IA1_14570 NC_022525.1 3048292 3049050 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3048292..3049050) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614673.1 CDS IA1_14575 NC_022525.1 3049037 3049543 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Positive regulator GrlA complement(3049037..3049543) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614674.1 CDS IA1_14580 NC_022525.1 3049650 3050441 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; adhesion protein complement(3049650..3050441) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614675.1 CDS IA1_14585 NC_022525.1 3050716 3051459 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone protein StdC complement(3050716..3051459) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614676.1 CDS IA1_14590 NC_022525.1 3051500 3053989 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial usher protein complement(3051500..3053989) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614677.1 CDS IA1_14595 NC_022525.1 3054109 3054696 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein StdA complement(3054109..3054696) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614678.1 CDS IA1_14600 NC_022525.1 3055415 3056047 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3055415..3056047) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614679.1 CDS IA1_14605 NC_022525.1 3056094 3056630 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(3056094..3056630) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614680.1 CDS IA1_14610 NC_022525.1 3057436 3057834 R stability determinant protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; pirin complement(3057436..3057834) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614681.1 CDS IA1_14615 NC_022525.1 3057834 3058061 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3057834..3058061) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614682.1 CDS IA1_14620 NC_022525.1 3058261 3058521 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; endonuclease 3058261..3058521 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614683.1 CDS IA1_14625 NC_022525.1 3058667 3058783 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3058667..3058783 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614684.1 CDS IA1_14630 NC_022525.1 3058802 3059602 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3058802..3059602 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614685.1 CDS IA1_14640 NC_022525.1 3059887 3060645 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3059887..3060645) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614686.1 CDS IA1_14645 NC_022525.1 3060910 3061455 D catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; isopentenyl-diphosphate delta-isomerase 3060910..3061455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614687.1 CDS lysS NC_022525.1 3061531 3063048 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysyl-tRNA synthetase complement(3061531..3063048) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614688.1 CDS prfA NC_022525.1 3063058 3063939 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 1 complement(3063058..3063939) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614689.1 CDS IA1_14660 NC_022525.1 3064261 3065994 R 5'-3' single-stranded-DNA-specific exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.; ssDNA exonuclease RecJ complement(3064261..3065994) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614690.1 CDS IA1_14665 NC_022525.1 3066000 3066713 R DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-disulfide isomerase complement(3066000..3066713) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614691.1 CDS xerD NC_022525.1 3066737 3067633 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine recombinase XerD complement(3066737..3067633) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614692.1 CDS IA1_14675 NC_022525.1 3067746 3068267 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavodoxin 3067746..3068267 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614693.1 CDS IA1_14680 NC_022525.1 3068320 3068733 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3068320..3068733) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614694.1 CDS IA1_14685 NC_022525.1 3068714 3068980 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3068714..3068980) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614695.1 CDS IA1_14690 NC_022525.1 3068979 3069215 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3068979..3069215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614696.1 CDS ygfZ NC_022525.1 3069230 3070210 D physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulato; Hda supressor; Derived by automated computational analysis using gene prediction method: Protein Homology.; global regulator 3069230..3070210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614697.1 CDS IA1_14700 NC_022525.1 3070326 3070985 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hemolysin complement(3070326..3070985) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614698.1 CDS IA1_14705 NC_022525.1 3071150 3071461 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3071150..3071461) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614699.1 CDS IA1_14710 NC_022525.1 3071620 3073053 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phospho-beta-glucosidase 3071620..3073053 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614700.1 CDS IA1_14715 NC_022525.1 3073101 3073994 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(3073101..3073994) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614701.1 CDS IA1_14720 NC_022525.1 3074450 3077323 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine dehydrogenase complement(3074450..3077323) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614702.1 CDS IA1_14725 NC_022525.1 3077486 3077875 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine cleavage system protein H complement(3077486..3077875) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614703.1 CDS gcvT NC_022525.1 3077901 3078995 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine cleavage system aminomethyltransferase T complement(3077901..3078995) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614704.1 CDS IA1_14735 NC_022525.1 3079450 3080652 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3079450..3080652) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614705.1 CDS IA1_14740 NC_022525.1 3080777 3081955 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3080777..3081955) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614706.1 CDS IA1_14745 NC_022525.1 3081952 3083268 R exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; Derived by automated computational analysis using gene prediction method: Protein Homology.; proline aminopeptidase P II complement(3081952..3083268) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614707.1 CDS IA1_14750 NC_022525.1 3083294 3083872 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3083294..3083872) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614708.1 CDS IA1_14755 NC_022525.1 3084039 3084368 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Z-ring-associated protein 3084039..3084368 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614709.1 CDS IA1_14760 NC_022525.1 3084662 3085210 D ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-formyltetrahydrofolate cyclo-ligase 3084662..3085210 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614710.1 CDS IA1_14765 NC_022525.1 3085591 3086823 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phosphoglycerate dehydrogenase complement(3085591..3086823) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614711.1 CDS IA1_14770 NC_022525.1 3087090 3087749 R catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose 5-phosphate isomerase complement(3087090..3087749) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614712.1 CDS IA1_14775 NC_022525.1 3087903 3088796 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; chromosome replication initiation inhibitor protein 3087903..3088796 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614713.1 CDS IA1_14780 NC_022525.1 3089062 3089808 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidative stress defense protein complement(3089062..3089808) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614714.1 CDS IA1_14785 NC_022525.1 3089902 3090537 R Involved in the export of arginine; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine exporter protein complement(3089902..3090537) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614715.1 CDS IA1_14790 NC_022525.1 3090738 3091598 R participates in the regulation of osmotic pressure changes within the cel; Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive channel MscS complement(3090738..3091598) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614716.1 CDS IA1_14795 NC_022525.1 3091831 3092910 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase complement(3091831..3092910) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614717.1 CDS IA1_14800 NC_022525.1 3093012 3094175 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerate kinase complement(3093012..3094175) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614718.1 CDS gapA NC_022525.1 3094197 3095243 R required for glycolysis; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glyceraldehyde-3-phosphate dehydrogenase complement(3094197..3095243) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614719.1 CDS IA1_14810 NC_022525.1 3095617 3096042 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 3095617..3096042 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614720.1 CDS IA1_14815 NC_022525.1 3096068 3096646 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3096068..3096646 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614721.1 CDS IA1_14820 NC_022525.1 3096647 3097354 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cobalt ABC transporter permease 3096647..3097354 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614722.1 CDS IA1_14825 NC_022525.1 3097432 3098019 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cobalt ABC transporter ATP-binding protein 3097432..3098019 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614723.1 CDS IA1_14830 NC_022525.1 3098013 3098669 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cobalt ABC transporter ATP-binding protein 3098013..3098669 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614724.1 CDS IA1_14835 NC_022525.1 3098713 3100704 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transketolase complement(3098713..3100704) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614725.1 CDS IA1_14840 NC_022525.1 3100980 3101738 D Derived by automated computational analysis using gene prediction method: Protein Homology.; metalloprotease 3100980..3101738 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614726.1 CDS IA1_14845 NC_022525.1 3101838 3102758 R catalyzes the formation of putrescine from agmatine; Derived by automated computational analysis using gene prediction method: Protein Homology.; agmatinase complement(3101838..3102758) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614727.1 CDS IA1_14850 NC_022525.1 3102963 3103916 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase complement(3102963..3103916) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614728.1 CDS IA1_14855 NC_022525.1 3104112 3104465 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Toxin-antitoxin biofilm protein TabA complement(3104112..3104465) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614729.1 CDS IA1_14860 NC_022525.1 3104645 3105652 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ureidoglycolate dehydrogenase complement(3104645..3105652) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614730.1 CDS IA1_14865 NC_022525.1 3105666 3106682 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase complement(3105666..3106682) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614731.1 CDS IA1_14870 NC_022525.1 3106685 3108088 R Derived by automated computational analysis using gene prediction method: Protein Homology.; D-mannonate oxidoreductase complement(3106685..3108088) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614732.1 CDS IA1_14875 NC_022525.1 3108968 3109075 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; racemase 3108968..3109075 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614733.1 CDS IA1_14880 NC_022525.1 3109390 3110139 R regulates the expression of uxuBA; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3109390..3110139) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614734.1 CDS IA1_14885 NC_022525.1 3110344 3111075 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3110344..3111075) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614735.1 CDS IA1_14890 NC_022525.1 3111219 3113117 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arginine decarboxylase complement(3111219..3113117) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614736.1 CDS IA1_14895 NC_022525.1 3113204 3113335 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3113204..3113335) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614737.1 CDS IA1_14900 NC_022525.1 3113669 3113836 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3113669..3113836 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614738.1 CDS IA1_14905 NC_022525.1 3113985 3115139 D Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine synthetase 3113985..3115139 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614739.1 CDS IA1_14910 NC_022525.1 3115632 3117026 D Derived by automated computational analysis using gene prediction method: Protein Homology.; D-galactose transporter 3115632..3117026 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614740.1 CDS IA1_14915 NC_022525.1 3117105 3117602 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3117105..3117602 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614741.1 CDS IA1_14920 NC_022525.1 3117698 3118405 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease 3117698..3118405 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614742.1 CDS IA1_14925 NC_022525.1 3118434 3119213 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 3118434..3119213 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614743.1 CDS IA1_14930 NC_022525.1 3119233 3120180 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione synthetase 3119233..3120180 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614744.1 CDS IA1_14935 NC_022525.1 3120396 3120959 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3120396..3120959 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614745.1 CDS IA1_14940 NC_022525.1 3120959 3121375 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction resolvase 3120959..3121375 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614746.1 CDS IA1_14945 NC_022525.1 3121422 3122108 R Derived by automated computational analysis using gene prediction method: Protein Homology.; global regulatory protein complement(3121422..3122108) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614747.1 CDS IA1_14950 NC_022525.1 3122241 3123221 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3122241..3123221) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614748.1 CDS IA1_14955 NC_022525.1 3123239 3123943 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3123239..3123943 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614749.1 CDS IA1_14960 NC_022525.1 3123962 3124528 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3123962..3124528 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614750.1 CDS IA1_14965 NC_022525.1 3124525 3124815 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3124525..3124815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614751.1 CDS IA1_14970 NC_022525.1 3124823 3125416 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside-triphosphate diphosphatase 3124823..3125416 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614752.1 CDS IA1_14975 NC_022525.1 3125409 3126545 D Derived by automated computational analysis using gene prediction method: Protein Homology.; HemN family oxidoreductase 3125409..3126545 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614753.1 CDS IA1_14980 NC_022525.1 3126637 3127644 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3126637..3127644) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614754.1 CDS ansB NC_022525.1 3127777 3128823 R catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-asparaginase complement(3127777..3128823) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614755.1 CDS IA1_14990 NC_022525.1 3129012 3129731 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3129012..3129731) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614756.1 CDS IA1_14995 NC_022525.1 3129781 3130107 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3129781..3130107) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614757.1 CDS trmB NC_022525.1 3130107 3130826 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (guanine-N(7)-)-methyltransferase complement(3130107..3130826) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614758.1 CDS IA1_15005 NC_022525.1 3130981 3132033 D Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine DNA glycosylase 3130981..3132033 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614759.1 CDS IA1_15010 NC_022525.1 3132061 3132336 D protects iron-sulfur proteins against oxidative damage; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidative damage protection protein 3132061..3132336 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614760.1 CDS mltC NC_022525.1 3132449 3133534 D Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein transglycosylase C 3132449..3133534 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614761.1 CDS IA1_15020 NC_022525.1 3133751 3135007 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside permease 3133751..3135007 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614762.1 CDS IA1_15025 NC_022525.1 3135069 3137204 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine decarboxylase complement(3135069..3137204) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614763.1 CDS IA1_15030 NC_022525.1 3137478 3137591 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3137478..3137591 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614764.1 CDS IA1_15035 NC_022525.1 3137630 3138337 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3137630..3138337 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614765.1 CDS IA1_15045 NC_022525.1 3138677 3139057 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; virulence protein complement(3138677..3139057) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614766.1 CDS IA1_15050 NC_022525.1 3139122 3140447 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxybutyrate CoA-transferase complement(3139122..3140447) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614767.1 CDS IA1_15055 NC_022525.1 3140472 3140999 R Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum cofactor biosynthesis protein MoeC complement(3140472..3140999) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614768.1 CDS IA1_15060 NC_022525.1 3141023 3141865 R Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase complement(3141023..3141865) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614769.1 CDS IA1_15065 NC_022525.1 3141957 3142835 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 3141957..3142835 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614770.1 CDS IA1_15070 NC_022525.1 3142883 3144622 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arylsulfatase complement(3142883..3144622) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614771.1 CDS IA1_15075 NC_022525.1 3144691 3145875 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Chondro-6-sulfatase complement(3144691..3145875) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614772.1 CDS IA1_15080 NC_022525.1 3146387 3147070 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 3146387..3147070 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614773.1 CDS IA1_15085 NC_022525.1 3147174 3147731 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3147174..3147731) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614774.1 CDS IA1_15090 NC_022525.1 3147709 3149208 R Derived by automated computational analysis using gene prediction method: Protein Homology.; APC family amino acid permease complement(3147709..3149208) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614775.1 CDS IA1_15095 NC_022525.1 3149417 3149791 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3149417..3149791) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614776.1 CDS IA1_15100 NC_022525.1 3149806 3151107 R Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD dependent oxidoreductase complement(3149806..3151107) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614777.1 CDS IA1_15105 NC_022525.1 3151269 3152753 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase 3151269..3152753 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614778.1 CDS IA1_15115 NC_022525.1 3152889 3153272 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA replication/recombination/repair protein complement(3152889..3153272) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614779.1 CDS IA1_15120 NC_022525.1 3153269 3153754 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3153269..3153754) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614780.1 CDS IA1_15125 NC_022525.1 3154479 3155402 R Derived by automated computational analysis using gene prediction method: Protein Homology.; xylanase/chitin deacetylase complement(3154479..3155402) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614781.1 CDS IA1_15130 NC_022525.1 3155441 3156319 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; amidohydrolase complement(3155441..3156319) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614782.1 CDS IA1_15135 NC_022525.1 3156715 3158019 R involved in the transport of aldohexuronates; Derived by automated computational analysis using gene prediction method: Protein Homology.; hexuronate transporter ExuT complement(3156715..3158019) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614783.1 CDS IA1_15140 NC_022525.1 3158424 3159608 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannonate dehydratase 3158424..3159608 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614784.1 CDS IA1_15145 NC_022525.1 3159719 3161191 D Derived by automated computational analysis using gene prediction method: Protein Homology.; D-mannonate oxidoreductase 3159719..3161191 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614785.1 CDS IA1_15150 NC_022525.1 3161203 3162615 D catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucuronate isomerase 3161203..3162615 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614786.1 CDS IA1_15155 NC_022525.1 3162915 3163973 R Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein complement(3162915..3163973) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614787.1 CDS IA1_15160 NC_022525.1 3164643 3166499 R catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase complement(3164643..3166499) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614788.1 CDS IA1_15165 NC_022525.1 3166726 3167592 D YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-transferase 3166726..3167592 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614789.1 CDS IA1_15170 NC_022525.1 3167660 3168370 R Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum ABC transporter substrate-binding protein complement(3167660..3168370) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614790.1 CDS IA1_15175 NC_022525.1 3168370 3169422 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3168370..3169422) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614791.1 CDS IA1_15180 NC_022525.1 3169498 3169746 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 accessory protein HypG complement(3169498..3169746) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614792.1 CDS hypA NC_022525.1 3169774 3170115 R plays a role in hydrogenase nickel cofactor insertion; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase nickel incorporation protein complement(3169774..3170115) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614793.1 CDS IA1_15190 NC_022525.1 3170108 3170596 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase complement(3170108..3170596) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614794.1 CDS hybD NC_022525.1 3170589 3171083 R protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 maturation endopeptidase complement(3170589..3171083) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614795.1 CDS IA1_15200 NC_022525.1 3171083 3172786 R involved in hydrogen uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 large subunit complement(3171083..3172786) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614796.1 CDS IA1_15205 NC_022525.1 3172783 3173961 R HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 b cytochrome subunit complement(3172783..3173961) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614797.1 CDS IA1_15210 NC_022525.1 3173951 3174937 R Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase complement(3173951..3174937) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614798.1 CDS IA1_15215 NC_022525.1 3174940 3176058 R involved in hydrogen uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 small subunit complement(3174940..3176058) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614799.1 CDS IA1_15220 NC_022525.1 3176248 3176535 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3176248..3176535) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614800.1 CDS IA1_15225 NC_022525.1 3176620 3178263 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein complement(3176620..3178263) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614801.1 CDS IA1_15230 NC_022525.1 3178570 3179064 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3178570..3179064) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614802.1 CDS IA1_15235 NC_022525.1 3179343 3179846 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RNA helicase complement(3179343..3179846) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614803.1 CDS IA1_15240 NC_022525.1 3179950 3180360 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3179950..3180360 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614804.1 CDS IA1_15245 NC_022525.1 3180347 3180751 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3180347..3180751 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614805.1 CDS IA1_15250 NC_022525.1 3180875 3181759 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 3180875..3181759 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614806.1 CDS IA1_15255 NC_022525.1 3181873 3182298 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; biopolymer transporter ExbD complement(3181873..3182298) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614807.1 CDS IA1_15260 NC_022525.1 3182305 3183039 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; biopolymer transporter ExbB complement(3182305..3183039) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614808.1 CDS IA1_15265 NC_022525.1 3183032 3183169 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(3183032..3183169) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614809.1 CDS IA1_15270 NC_022525.1 3183291 3184478 D catalyzes the formation of L-homocysteine from cystathionine; Derived by automated computational analysis using gene prediction method: Protein Homology.; cystathionine beta-lyase 3183291..3184478 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614810.1 CDS IA1_15275 NC_022525.1 3184618 3185277 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3184618..3185277 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614811.1 CDS IA1_15280 NC_022525.1 3185341 3186258 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(3185341..3186258) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614812.1 CDS IA1_15285 NC_022525.1 3186433 3187596 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde oxidoreductase 3186433..3187596 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614813.1 CDS dkgA NC_022525.1 3187702 3188529 D methylglyoxal reductase/beta-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,5-diketo-D-gluconic acid reductase 3187702..3188529 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614814.1 CDS IA1_15300 NC_022525.1 3190225 3190680 D Derived by automated computational analysis using gene prediction method: Protein Homology.; diadenosine tetraphosphatehydrolase 3190225..3190680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614815.1 CDS IA1_15305 NC_022525.1 3190838 3191032 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3190838..3191032) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614816.1 CDS IA1_15310 NC_022525.1 3191235 3193406 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3191235..3193406) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614817.1 CDS IA1_15315 NC_022525.1 3193894 3194877 D Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter substrate-binding protein 3193894..3194877 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614818.1 CDS IA1_15320 NC_022525.1 3194919 3195401 D Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter permease 3194919..3195401 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614819.1 CDS IA1_15325 NC_022525.1 3195412 3196719 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3195412..3196719 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614820.1 CDS IA1_15330 NC_022525.1 3196765 3198177 R septal ring component that protects the divisome from stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsI complement(3196765..3198177) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614821.1 CDS IA1_15335 NC_022525.1 3198251 3198988 R catalyzes the formation of 1,2-diacyl-sn-glycerol 3-phosphate from 1-acyl-sn-glycerol 3-phosphate using either acyl-CoA or acyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3198251..3198988) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614822.1 CDS IA1_15340 NC_022525.1 3199245 3201503 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase IV subunit A complement(3199245..3201503) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614823.1 CDS IA1_15345 NC_022525.1 3201614 3202480 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(3201614..3202480) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614824.1 CDS IA1_15350 NC_022525.1 3202552 3202944 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3202552..3202944) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614825.1 CDS IA1_15355 NC_022525.1 3203096 3203755 D response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3203096..3203755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614826.1 CDS IA1_15360 NC_022525.1 3203752 3205101 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein QseC 3203752..3205101 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614827.1 CDS IA1_15365 NC_022525.1 3205208 3205789 D involved in drug resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADPH quinone reductase MdaB 3205208..3205789 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614828.1 CDS IA1_15370 NC_022525.1 3205821 3206135 D catalyzes the oxidation of menadiol to menadione; Derived by automated computational analysis using gene prediction method: Protein Homology.; quinol monooxygenase 3205821..3206135 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614829.1 CDS IA1_15375 NC_022525.1 3206260 3208152 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase IV subunit B complement(3206260..3208152) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614830.1 CDS IA1_15380 NC_022525.1 3208180 3208761 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; esterase complement(3208180..3208761) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614831.1 CDS IA1_15385 NC_022525.1 3208761 3209588 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 3',5'-cyclic-nucleotide phosphodiesterase complement(3208761..3209588) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614832.1 CDS IA1_15390 NC_022525.1 3209613 3210035 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dehydrogenase complement(3209613..3210035) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614833.1 CDS nudF NC_022525.1 3210032 3210664 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-ribose pyrophosphatase complement(3210032..3210664) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614834.1 CDS tolC NC_022525.1 3210871 3212343 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane channel protein 3210871..3212343 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614835.1 CDS IA1_15405 NC_022525.1 3212553 3213224 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3212553..3213224 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614836.1 CDS IA1_15410 NC_022525.1 3213230 3214393 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3213230..3214393 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614837.1 CDS IA1_15415 NC_022525.1 3214454 3215284 R seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; Derived by automated computational analysis using gene prediction method: Protein Homology.; LigB family dioxygenase complement(3214454..3215284) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614838.1 CDS IA1_15420 NC_022525.1 3215383 3216156 D Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter ZupT 3215383..3216156 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614839.1 CDS IA1_15425 NC_022525.1 3216223 3216399 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3216223..3216399) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614840.1 CDS IA1_15430 NC_022525.1 3216799 3218595 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arylsulfate sulfotransferase 3216799..3218595 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614841.1 CDS IA1_15435 NC_022525.1 3218615 3219286 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol:disulfide interchange protein 3218615..3219286 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614842.1 CDS IA1_15440 NC_022525.1 3219301 3219978 D Derived by automated computational analysis using gene prediction method: Protein Homology.; disulfide oxidoreductase 3219301..3219978 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614843.1 CDS ribB NC_022525.1 3220182 3220835 R DHBP synthase; functions during riboflavin biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3220182..3220835) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614844.1 CDS IA1_15450 NC_022525.1 3221272 3221568 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3221272..3221568 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614845.1 CDS IA1_15455 NC_022525.1 3221643 3221852 R Involved in glycogen synthesis. May be involved in glycogen priming; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen synthesis protein GlgS complement(3221643..3221852) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614846.1 CDS IA1_15460 NC_022525.1 3222110 3222730 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3222110..3222730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614847.1 CDS IA1_15465 NC_022525.1 3222749 3224428 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3222749..3224428 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614848.1 CDS IA1_15470 NC_022525.1 3224887 3226320 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3224887..3226320) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614849.1 CDS IA1_15475 NC_022525.1 3226368 3229211 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3226368..3229211) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614850.1 CDS IA1_15480 NC_022525.1 3229329 3230630 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3229329..3230630) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614851.1 CDS IA1_15485 NC_022525.1 3230872 3231486 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3230872..3231486 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614852.1 CDS IA1_15490 NC_022525.1 3231549 3232790 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA nucleotidyl transferase 3231549..3232790 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614853.1 CDS IA1_15495 NC_022525.1 3232895 3233716 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP pyrophosphate phosphatase complement(3232895..3233716) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614854.1 CDS folB NC_022525.1 3233814 3234173 R catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroneopterin triphosphate 2'-epimerase complement(3233814..3234173) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614855.1 CDS IA1_15505 NC_022525.1 3234280 3234891 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate acyltransferase 3234280..3234891 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614856.1 CDS IA1_15510 NC_022525.1 3234938 3235117 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3234938..3235117) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614857.1 CDS IA1_15515 NC_022525.1 3235141 3236154 R universal genome maintenance protein; Kae1/Qri7/OSGEP/YgjD family protein; in Archaea, some Kae1 are found as fusion proteins similar to two distinct proteins in yeast that are involved in the KEOPS complex; kinase associated endopeptidase 1 (Kae1) and a serine/threonine protein kinase (Bud32); in Pyrococcus Kae1 has atypical AP endonuclease activity and inhibits the kinase activity of Bud32; the protein is essential in Escherichia coli and Bacillus subtilis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UGMP family protein complement(3235141..3236154) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614858.1 CDS rpsU NC_022525.1 3236382 3236597 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S21 3236382..3236597 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614859.1 CDS dnaG NC_022525.1 3236833 3238578 D synthesizes RNA primers at the replication forks; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA primase 3236833..3238578 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614860.1 CDS IA1_15530 NC_022525.1 3238593 3240575 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor RpoD 3238593..3240575 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614861.1 CDS IA1_15535 NC_022525.1 3240699 3241205 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA glycosylase complement(3240699..3241205) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614862.1 CDS IA1_15545 NC_022525.1 3241486 3242253 R Derived by automated computational analysis using gene prediction method: Protein Homology.; siderophore-interacting protein complement(3241486..3242253) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614863.1 CDS IA1_15550 NC_022525.1 3242488 3243132 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 3242488..3243132 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614864.1 CDS IA1_15555 NC_022525.1 3243129 3244694 R Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein complement(3243129..3244694) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614865.1 CDS IA1_15560 NC_022525.1 3245082 3246602 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aerotaxis receptor complement(3245082..3246602) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614866.1 CDS IA1_15565 NC_022525.1 3247005 3248411 D catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine--2-oxoglutarate aminotransferase 3247005..3248411 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614867.1 CDS fadH NC_022525.1 3248582 3250600 D catalyzes the formation of trans-2- enoyl-CoA from 2,4-dienoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,4-dienoyl-CoA reductase 3248582..3250600 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614868.1 CDS IA1_15575 NC_022525.1 3250681 3251817 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(3250681..3251817) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614869.1 CDS IA1_15580 NC_022525.1 3251903 3252400 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3251903..3252400 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614870.1 CDS IA1_15585 NC_022525.1 3252552 3253244 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3252552..3253244 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614871.1 CDS IA1_15590 NC_022525.1 3253333 3254331 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 3253333..3254331 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614872.1 CDS IA1_15595 NC_022525.1 3254602 3255570 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3254602..3255570 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614873.1 CDS IA1_15600 NC_022525.1 3255825 3257069 D involved in the import of serine and threonine coupled with the import of sodium; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine transporter 3255825..3257069 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614874.1 CDS IA1_15605 NC_022525.1 3257519 3258181 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3257519..3258181 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614875.1 CDS IA1_15610 NC_022525.1 3258185 3258568 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3258185..3258568 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614876.1 CDS IA1_15615 NC_022525.1 3258713 3259081 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3258713..3259081 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614877.1 CDS IA1_15620 NC_022525.1 3259123 3259428 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3259123..3259428 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614878.1 CDS IA1_15625 NC_022525.1 3259431 3259829 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3259431..3259829 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614879.1 CDS IA1_15630 NC_022525.1 3259826 3260125 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3259826..3260125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614880.1 CDS IA1_15635 NC_022525.1 3260270 3260755 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DoxX protein 3260270..3260755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614881.1 CDS IA1_15640 NC_022525.1 3260823 3261809 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3260823..3261809 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614882.1 CDS IA1_15645 NC_022525.1 3261933 3262298 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3261933..3262298 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614883.1 CDS IA1_15650 NC_022525.1 3262337 3263233 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(3262337..3263233) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614884.1 CDS IA1_15655 NC_022525.1 3263338 3264039 D Derived by automated computational analysis using gene prediction method: Protein Homology.; pirin 3263338..3264039 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614885.1 CDS IA1_15660 NC_022525.1 3264063 3264227 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3264063..3264227 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614886.1 CDS IA1_15665 NC_022525.1 3264340 3265650 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3264340..3265650) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614887.1 CDS IA1_15670 NC_022525.1 3265676 3267007 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3265676..3267007) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614888.1 CDS IA1_15675 NC_022525.1 3267324 3268688 R catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-serine dehydratase complement(3267324..3268688) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614889.1 CDS IA1_15680 NC_022525.1 3268758 3271052 R formate acetyltransferase; catalyzes the formation of formate and acetyl-CoA from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; keto-acid formate acetyltransferase complement(3268758..3271052) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614890.1 CDS IA1_15685 NC_022525.1 3271086 3272294 R catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; propionate/acetate kinase complement(3271086..3272294) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614891.1 CDS IA1_15690 NC_022525.1 3272361 3273692 R Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine transporter complement(3272361..3273692) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614892.1 CDS IA1_15695 NC_022525.1 3273713 3274702 R catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine dehydratase complement(3273713..3274702) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614893.1 CDS IA1_15700 NC_022525.1 3274800 3275738 R regulates the tdcABCDEFG operon which is involved in amino acid degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3274800..3275738) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614894.1 CDS IA1_15705 NC_022525.1 3276367 3276690 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3276367..3276690 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614895.1 CDS IA1_15710 NC_022525.1 3277092 3278237 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerate kinase complement(3277092..3278237) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614896.1 CDS garR NC_022525.1 3278335 3279225 R catalyzes the reduction of tartronate semialdehyde to glycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; tartronate semialdehyde reductase complement(3278335..3279225) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614897.1 CDS IA1_15720 NC_022525.1 3279251 3280021 R cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(3279251..3280021) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614898.1 CDS garD NC_022525.1 3280551 3282122 D catalyzes the formation of 5-dehydro-4-deoxy-D-glucarate from D-galactarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactarate dehydrogenase 3280551..3282122 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614899.1 CDS IA1_15730 NC_022525.1 3282362 3283309 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar kinase complement(3282362..3283309) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614900.1 CDS IA1_15735 NC_022525.1 3283320 3284153 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator complement(3283320..3284153) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614901.1 CDS gatY NC_022525.1 3284487 3285341 D catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase 3284487..3285341 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614902.1 CDS IA1_15745 NC_022525.1 3285313 3286266 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphofructokinase 3285313..3286266 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614903.1 CDS IA1_15750 NC_022525.1 3286293 3287720 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIBC 3286293..3287720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614904.1 CDS IA1_15755 NC_022525.1 3287707 3288513 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS fructose transporter subunit IIA 3287707..3288513 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614905.1 CDS IA1_15760 NC_022525.1 3288711 3289982 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tagatose-bisphosphate aldolase 3288711..3289982 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614906.1 CDS IA1_15765 NC_022525.1 3289997 3290461 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS galactitol transporter subunit IIA 3289997..3290461 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614907.1 CDS IA1_15770 NC_022525.1 3290492 3290776 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIB 3290492..3290776 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614908.1 CDS gatC NC_022525.1 3290780 3292153 D with GatAB forms a phosphoenolpyruvate-dependent sugar phosphotransferase transporter for galactitol; subunit IIC forms the translocation channel and contains the substrate binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS galactitol transporter subunit IIC 3290780..3292153 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614909.1 CDS IA1_15780 NC_022525.1 3292197 3293240 D Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactitol-1-phosphate 5-dehydrogenase 3292197..3293240 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614910.1 CDS IA1_15785 NC_022525.1 3293351 3294124 D Derived by automated computational analysis using gene prediction method: Protein Homology.; galactitol utilization operon repressor 3293351..3294124 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614911.1 CDS IA1_15790 NC_022525.1 3294282 3295145 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 16S rRNA methyltransferase complement(3294282..3295145) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614912.1 CDS IA1_15795 NC_022525.1 3295209 3297251 D Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein activator LpoA 3295209..3297251 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614913.1 CDS IA1_15800 NC_022525.1 3297209 3297604 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3297209..3297604 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614914.1 CDS gmhA NC_022525.1 3297626 3298216 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoheptose isomerase 3297626..3298216 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614915.1 CDS IA1_15810 NC_022525.1 3298226 3298801 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein 3298226..3298801 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614916.1 CDS IA1_15815 NC_022525.1 3298868 3299503 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3298868..3299503) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614917.1 CDS IA1_15820 NC_022525.1 3299634 3300152 D Derived by automated computational analysis using gene prediction method: Protein Homology.; general stress protein 3299634..3300152 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614918.1 CDS IA1_15825 NC_022525.1 3300132 3300575 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3300132..3300575) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614919.1 CDS IA1_15830 NC_022525.1 3300613 3300930 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GIY-YIG nuclease 3300613..3300930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614920.1 CDS IA1_15835 NC_022525.1 3300917 3301420 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; N-acetyltransferase complement(3300917..3301420) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614921.1 CDS IA1_15840 NC_022525.1 3301414 3301938 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3301414..3301938) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614922.1 CDS IA1_15845 NC_022525.1 3302155 3303150 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 3302155..3303150 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614923.1 CDS IA1_15850 NC_022525.1 3303159 3304037 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 3303159..3304037 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614924.1 CDS IA1_15855 NC_022525.1 3304215 3305222 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3304215..3305222 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614925.1 CDS IA1_15860 NC_022525.1 3305200 3305919 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transpeptidase complement(3305200..3305919) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614926.1 CDS IA1_15865 NC_022525.1 3306078 3306608 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3306078..3306608 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614927.1 CDS IA1_15870 NC_022525.1 3306669 3307913 R tryptophan transporter of high affinity; Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan permease complement(3306669..3307913) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614928.1 CDS IA1_15875 NC_022525.1 3308067 3309956 R participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase complement(3308067..3309956) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614929.1 CDS IA1_15880 NC_022525.1 3310135 3311019 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein NlpI complement(3310135..3311019) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614930.1 CDS IA1_15885 NC_022525.1 3311129 3313294 R Derived by automated computational analysis using gene prediction method: Protein Homology.; polynucleotide phosphorylase/polyadenylase complement(3311129..3313294) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614931.1 CDS IA1_15890 NC_022525.1 3313506 3313775 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S15 complement(3313506..3313775) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614932.1 CDS truB NC_022525.1 3313926 3314870 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase B complement(3313926..3314870) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614933.1 CDS rbfA NC_022525.1 3314870 3315271 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-binding factor A complement(3314870..3315271) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614934.1 CDS infB NC_022525.1 3315492 3318170 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor IF-2 complement(3315492..3318170) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614935.1 CDS nusA NC_022525.1 3318195 3319697 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M54 complement(3318195..3319697) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614936.1 CDS IA1_15915 NC_022525.1 3319725 3320177 R required for the maturation of the 30S ribosomal subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome maturation protein RimP complement(3319725..3320177) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614937.1 CDS IA1_15925 NC_022525.1 3320805 3322148 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; argininosuccinate synthase 3320805..3322148 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614938.1 CDS secG NC_022525.1 3322446 3322778 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; preprotein translocase subunit SecG complement(3322446..3322778) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614939.1 CDS glmM NC_022525.1 3323001 3324338 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglucosamine mutase complement(3323001..3324338) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614940.1 CDS folP NC_022525.1 3324331 3325179 R catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropteroate synthase complement(3324331..3325179) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614941.1 CDS hflB NC_022525.1 3325284 3327218 R inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent metalloprotease complement(3325284..3327218) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614942.1 CDS rrmJ NC_022525.1 3327322 3327948 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(3327322..3327948) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614943.1 CDS IA1_15960 NC_022525.1 3328036 3328368 D RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RNA-binding protein YhbY 3328036..3328368 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614944.1 CDS greA NC_022525.1 3328524 3329000 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription elongation factor GreA complement(3328524..3329000) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614945.1 CDS IA1_15970 NC_022525.1 3329054 3329155 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3329054..3329155) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614946.1 CDS IA1_15975 NC_022525.1 3329248 3330681 D penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase 3329248..3330681 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614947.1 CDS obgE NC_022525.1 3330812 3331984 R ObgE; essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GTPase CgtA complement(3330812..3331984) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614948.1 CDS IA1_15985 NC_022525.1 3332000 3332965 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(3332000..3332965) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614949.1 CDS rpmA NC_022525.1 3333095 3333352 R involved in the peptidyltransferase reaction during translation; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L27 complement(3333095..3333352) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614950.1 CDS rplU NC_022525.1 3333372 3333683 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L21 complement(3333372..3333683) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614951.1 CDS IA1_16000 NC_022525.1 3333941 3334912 D Derived by automated computational analysis using gene prediction method: Protein Homology.; octaprenyl diphosphate synthase 3333941..3334912 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614952.1 CDS IA1_16005 NC_022525.1 3335144 3335431 D activator of maltose metabolism genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3335144..3335431 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614953.1 CDS IA1_16010 NC_022525.1 3335490 3336749 R Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3335490..3336749) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614954.1 CDS IA1_16015 NC_022525.1 3336803 3337096 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3336803..3337096) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614955.1 CDS IA1_16020 NC_022525.1 3337245 3337541 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate transporter complement(3337245..3337541) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614956.1 CDS IA1_16025 NC_022525.1 3337541 3338176 R involved in maintaining outer membrane lipid asymmetry; Derived by automated computational analysis using gene prediction method: Protein Homology.; organic solvent ABC transporter substrate-binding protein complement(3337541..3338176) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614957.1 CDS IA1_16030 NC_022525.1 3338195 3338746 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipid ABC transporter substrate-binding protein complement(3338195..3338746) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614958.1 CDS IA1_16035 NC_022525.1 3338751 3339533 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease complement(3338751..3339533) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614959.1 CDS IA1_16040 NC_022525.1 3339541 3340353 R ABC transporter maintaining outer membrane lipid asymmetry; Derived by automated computational analysis using gene prediction method: Protein Homology.; organic solvent ABC transporter ATP-binding protein complement(3339541..3340353) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614960.1 CDS IA1_16045 NC_022525.1 3340566 3341543 D YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 3340566..3341543 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614961.1 CDS IA1_16050 NC_022525.1 3341557 3342543 D Derived by automated computational analysis using gene prediction method: Protein Homology.; D-arabinose 5-phosphate isomerase 3341557..3342543 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614962.1 CDS IA1_16055 NC_022525.1 3342564 3343130 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3342564..3343130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614963.1 CDS IA1_16060 NC_022525.1 3343127 3343702 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar ABC transporter substrate-binding protein 3343127..3343702 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614964.1 CDS IA1_16065 NC_022525.1 3343671 3344225 D LptA; periplasmic binding protein part of a putative ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter substrate-binding protein 3343671..3344225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614965.1 CDS IA1_16070 NC_022525.1 3344232 3344957 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate ABC transporter ATP-binding protein 3344232..3344957 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614966.1 CDS IA1_16075 NC_022525.1 3345005 3346438 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase factor sigma-54 3345005..3346438 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614967.1 CDS IA1_16080 NC_022525.1 3346461 3346748 D YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome hibernation promoting factor HPF 3346461..3346748 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614968.1 CDS IA1_16085 NC_022525.1 3346866 3347357 D involved in nitrogen metabolism; protein IIA is phosphorylated by enzyme I(Ntr); Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIA 3346866..3347357 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614969.1 CDS IA1_16090 NC_022525.1 3347403 3348257 D glucosamine-6-phosphate regulated; inactivates the glmS upregulator glmZ; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glmZ(sRNA)-inactivating NTPase 3347403..3348257 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614970.1 CDS IA1_16095 NC_022525.1 3348254 3348526 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphohistidinoprotein-hexose phosphotransferase 3348254..3348526 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614971.1 CDS IA1_16100 NC_022525.1 3348775 3349407 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3348775..3349407 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614972.1 CDS mtgA NC_022525.1 3349482 3350210 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; monofunctional biosynthetic peptidoglycan transglycosylase complement(3349482..3350210) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614973.1 CDS IA1_16110 NC_022525.1 3350207 3350860 R Derived by automated computational analysis using gene prediction method: Protein Homology.; isoprenoid biosynthesis protein complement(3350207..3350860) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614974.1 CDS IA1_16115 NC_022525.1 3351087 3353423 R sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aerobic respiration control sensor protein ArcB complement(3351087..3353423) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614975.1 CDS IA1_16120 NC_022525.1 3353517 3354446 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3353517..3354446) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614976.1 CDS gltB NC_022525.1 3355118 3359578 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate synthase subunit alpha 3355118..3359578 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614977.1 CDS IA1_16135 NC_022525.1 3359588 3361006 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate synthase subunit beta 3359588..3361006 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614978.1 CDS IA1_16140 NC_022525.1 3361213 3362316 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3361213..3362316 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614979.1 CDS codB NC_022525.1 3362432 3363685 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cytosine permease 3362432..3363685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614980.1 CDS IA1_16150 NC_022525.1 3363672 3364952 D Catalyzes the deamination of cytosine to uracil and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytosine deaminase 3363672..3364952 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614981.1 CDS IA1_16155 NC_022525.1 3365035 3365502 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3365035..3365502) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614982.1 CDS IA1_16160 NC_022525.1 3365499 3366374 R catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmannosamine kinase complement(3365499..3366374) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614983.1 CDS IA1_16165 NC_022525.1 3366371 3367060 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmannosamine-6-phosphate 2-epimerase complement(3366371..3367060) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614984.1 CDS IA1_16170 NC_022525.1 3367107 3368597 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sialic acid transporter complement(3367107..3368597) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614985.1 CDS IA1_16175 NC_022525.1 3368713 3369606 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylneuraminate lyase complement(3368713..3369606) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614986.1 CDS IA1_16180 NC_022525.1 3369741 3370532 R Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3369741..3370532) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614987.1 CDS IA1_16185 NC_022525.1 3370641 3371141 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase complement(3370641..3371141) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614988.1 CDS sspA NC_022525.1 3371147 3371785 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.; stringent starvation protein A complement(3371147..3371785) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614989.1 CDS IA1_16195 NC_022525.1 3372048 3372842 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3372048..3372842) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614990.1 CDS IA1_16200 NC_022525.1 3373000 3373392 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S9 complement(3373000..3373392) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614991.1 CDS IA1_16205 NC_022525.1 3373408 3373836 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L13 complement(3373408..3373836) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614992.1 CDS IA1_16210 NC_022525.1 3374124 3375248 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3374124..3375248) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614993.1 CDS IA1_16215 NC_022525.1 3375435 3375839 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3375435..3375839 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614994.1 CDS IA1_16220 NC_022525.1 3375996 3377363 D Derived by automated computational analysis using gene prediction method: Protein Homology.; serine endoprotease DegQ 3375996..3377363 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614995.1 CDS IA1_16225 NC_022525.1 3377456 3378526 D Derived by automated computational analysis using gene prediction method: Protein Homology.; serine endoprotease 3377456..3378526 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614996.1 CDS IA1_16230 NC_022525.1 3378560 3379291 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3378560..3379291) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614997.1 CDS IA1_16235 NC_022525.1 3379311 3380612 R catalyzes the formation of pyruvate from oxaloacetate; sodium translocating; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase subunit beta complement(3379311..3380612) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614998.1 CDS IA1_16240 NC_022525.1 3380625 3382400 R catalyzes the formation of pyruvate from oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase complement(3380625..3382400) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008614999.1 CDS IA1_16245 NC_022525.1 3382416 3382658 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxaloacetate decarboxylase subunit gamma complement(3382416..3382658) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615000.1 CDS IA1_16250 NC_022525.1 3382815 3383432 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L(+)-tartrate dehydratase subunit beta complement(3382815..3383432) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615001.1 CDS IA1_16255 NC_022525.1 3383432 3384331 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tartrate dehydratase subunit alpha complement(3383432..3384331) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615002.1 CDS IA1_16260 NC_022525.1 3384364 3385632 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transporter complement(3384364..3385632) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615003.1 CDS IA1_16265 NC_022525.1 3385843 3386508 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LysR family transcriptional regulator complement(3385843..3386508) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615004.1 CDS IA1_16270 NC_022525.1 3386495 3387124 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GntR family transcriptional regulator complement(3386495..3387124) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615005.1 CDS IA1_16275 NC_022525.1 3387244 3388182 R oxidizes malate to oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate dehydrogenase complement(3387244..3388182) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615006.1 CDS IA1_16280 NC_022525.1 3388597 3389067 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine repressor 3388597..3389067 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615007.1 CDS IA1_16285 NC_022525.1 3389180 3389275 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3389180..3389275 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615008.1 CDS IA1_16290 NC_022525.1 3389432 3389695 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3389432..3389695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615009.1 CDS IA1_16295 NC_022525.1 3389799 3390065 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3389799..3390065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615010.1 CDS IA1_16300 NC_022525.1 3390125 3390397 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3390125..3390397) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615011.1 CDS IA1_16305 NC_022525.1 3390569 3392536 R with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxybenzoic acid transporter complement(3390569..3392536) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615012.1 CDS IA1_16310 NC_022525.1 3392542 3393474 R with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxybenzoic acid transporter complement(3392542..3393474) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615013.1 CDS IA1_16315 NC_022525.1 3393482 3393685 R membrane protein AaeX; the gene is a member of the aaeXAB operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein FixA complement(3393482..3393685) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615014.1 CDS IA1_16320 NC_022525.1 3393867 3394796 D for aaeXAB operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3393867..3394796 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615015.1 CDS tldD NC_022525.1 3394919 3396364 R responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; Derived by automated computational analysis using gene prediction method: Protein Homology.; protease TldD complement(3394919..3396364) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615016.1 CDS IA1_16330 NC_022525.1 3396509 3400309 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3396509..3400309) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615017.1 CDS IA1_16335 NC_022525.1 3400416 3401885 R involved in the processing of the 5'end of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease G complement(3400416..3401885) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615018.1 CDS IA1_16340 NC_022525.1 3401875 3402468 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; Maf complement(3401875..3402468) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615019.1 CDS IA1_16345 NC_022525.1 3402477 3402968 R part of cell wall structural complex MreBCD; transmembrane component; Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein MreD complement(3402477..3402968) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615020.1 CDS IA1_16350 NC_022525.1 3402968 3404020 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein MreC complement(3402968..3404020) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615021.1 CDS IA1_16355 NC_022525.1 3404085 3405128 R functions in MreBCD complex in some organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein Mbl complement(3404085..3405128) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615022.1 CDS IA1_16360 NC_022525.1 3405436 3407376 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein complement(3405436..3407376) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615023.1 CDS IA1_16365 NC_022525.1 3407580 3408554 D Derived by automated computational analysis using gene prediction method: Protein Homology.; quinone oxidoreductase 3407580..3408554 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615024.1 CDS IA1_16370 NC_022525.1 3408667 3409671 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; requires inner membrane anchor protein YedZ; Derived by automated computational analysis using gene prediction method: Protein Homology.; TMAO/DMSO reductase 3408667..3409671 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615025.1 CDS IA1_16375 NC_022525.1 3409672 3410271 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite oxidase subunit YedZ 3409672..3410271 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615026.1 CDS IA1_16380 NC_022525.1 3410664 3411134 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase biotin carboxyl carrier protein 3410664..3411134 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615027.1 CDS IA1_16385 NC_022525.1 3411145 3412494 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase biotin carboxylase subunit 3411145..3412494 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615028.1 CDS IA1_16390 NC_022525.1 3412603 3412845 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3412603..3412845 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615029.1 CDS panF NC_022525.1 3412835 3414286 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:pantothenate symporter 3412835..3414286 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615030.1 CDS prmA NC_022525.1 3414298 3415179 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal protein L11 methyltransferase 3414298..3415179 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615031.1 CDS IA1_16405 NC_022525.1 3415840 3416805 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA-dihydrouridine synthase B 3415840..3416805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615032.1 CDS fis NC_022525.1 3416831 3417127 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; Derived by automated computational analysis using gene prediction method: Protein Homology.; Fis family transcriptional regulator 3416831..3417127 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615033.1 CDS IA1_16415 NC_022525.1 3417213 3418097 D Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase 3417213..3418097 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615034.1 CDS IA1_16420 NC_022525.1 3418180 3418344 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3418180..3418344 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615035.1 CDS IA1_16430 NC_022525.1 3420597 3421259 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3420597..3421259) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615036.1 CDS IA1_16435 NC_022525.1 3421673 3422830 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acriflavine resistance protein E 3421673..3422830 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615037.1 CDS IA1_16440 NC_022525.1 3422842 3425955 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 3422842..3425955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615038.1 CDS IA1_16445 NC_022525.1 3426310 3426414 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3426310..3426414 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615039.1 CDS IA1_16480 NC_022525.1 3432811 3432963 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3432811..3432963) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615040.1 CDS IA1_16485 NC_022525.1 3433077 3433631 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3433077..3433631 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615041.1 CDS IA1_16490 NC_022525.1 3433607 3433864 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3433607..3433864) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615042.1 CDS IA1_16495 NC_022525.1 3433861 3434679 R Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate 5-dehydrogenase complement(3433861..3434679) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615043.1 CDS IA1_16500 NC_022525.1 3434684 3435256 R involved in the biosynthesis of the threonylcarbamoyladenosine (t6A) residue at position 37 of ANN-decoding tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein complement(3434684..3435256) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615044.1 CDS IA1_16505 NC_022525.1 3435261 3435803 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3435261..3435803) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615045.1 CDS IA1_16510 NC_022525.1 3435830 3436303 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3435830..3436303) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615046.1 CDS IA1_16520 NC_022525.1 3437530 3438039 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide deformylase 3437530..3438039 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615047.1 CDS fmt NC_022525.1 3438055 3439002 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionyl-tRNA formyltransferase 3438055..3439002 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615048.1 CDS IA1_16530 NC_022525.1 3439054 3440343 D catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 3439054..3440343 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615049.1 CDS trkA NC_022525.1 3440365 3441741 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter peripheral membrane protein 3440365..3441741 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615050.1 CDS mscL NC_022525.1 3441883 3442296 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; large-conductance mechanosensitive channel 3441883..3442296 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615051.1 CDS zntR NC_022525.1 3442559 3442984 R mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc-responsive transcriptional regulator complement(3442559..3442984) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615052.1 CDS IA1_16550 NC_022525.1 3442995 3443363 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3442995..3443363) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615053.1 CDS rplQ NC_022525.1 3443470 3443853 R is a component of the macrolide binding site in the peptidyl transferase center; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L17 complement(3443470..3443853) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615054.1 CDS IA1_16560 NC_022525.1 3443894 3444883 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit alpha complement(3443894..3444883) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615055.1 CDS IA1_16565 NC_022525.1 3444909 3445529 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S4 complement(3444909..3445529) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615056.1 CDS IA1_16570 NC_022525.1 3445563 3445952 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S11 complement(3445563..3445952) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615057.1 CDS IA1_16575 NC_022525.1 3445969 3446325 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S13 complement(3445969..3446325) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615058.1 CDS secY NC_022525.1 3446620 3447951 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecY complement(3446620..3447951) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615059.1 CDS IA1_16585 NC_022525.1 3447959 3448393 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L15 complement(3447959..3448393) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615060.1 CDS rpmD NC_022525.1 3448397 3448576 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L30 complement(3448397..3448576) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615061.1 CDS IA1_16595 NC_022525.1 3448580 3449083 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S5 complement(3448580..3449083) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615062.1 CDS IA1_16600 NC_022525.1 3449098 3449451 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L18 complement(3449098..3449451) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615063.1 CDS IA1_16605 NC_022525.1 3449461 3449994 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L6 complement(3449461..3449994) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615064.1 CDS IA1_16610 NC_022525.1 3450007 3450399 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S8 complement(3450007..3450399) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615065.1 CDS rpsN NC_022525.1 3450433 3450738 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S14 complement(3450433..3450738) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615066.1 CDS IA1_16620 NC_022525.1 3450753 3451292 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L5 complement(3450753..3451292) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615067.1 CDS rplX NC_022525.1 3451307 3451621 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L24 complement(3451307..3451621) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615068.1 CDS IA1_16630 NC_022525.1 3451632 3452003 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L14 complement(3451632..3452003) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615069.1 CDS IA1_16635 NC_022525.1 3452167 3452421 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S17 complement(3452167..3452421) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615070.1 CDS IA1_16640 NC_022525.1 3452421 3452612 R one of the stabilizing components for the large ribosomal subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 50S ribosomal protein L29 complement(3452421..3452612) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615071.1 CDS IA1_16645 NC_022525.1 3452612 3453022 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L16 complement(3452612..3453022) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615072.1 CDS IA1_16650 NC_022525.1 3453035 3453736 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S3 complement(3453035..3453736) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615073.1 CDS IA1_16655 NC_022525.1 3453754 3454086 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L22 complement(3453754..3454086) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615074.1 CDS rpsS NC_022525.1 3454101 3454379 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 30S ribosomal protein S19 complement(3454101..3454379) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615075.1 CDS IA1_16665 NC_022525.1 3454396 3455217 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L2 complement(3454396..3455217) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615076.1 CDS rplW NC_022525.1 3455235 3455537 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L23 complement(3455235..3455537) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615077.1 CDS rplD NC_022525.1 3455534 3456139 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L4 complement(3455534..3456139) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615078.1 CDS IA1_16680 NC_022525.1 3456150 3456779 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L3 complement(3456150..3456779) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615079.1 CDS rpsJ NC_022525.1 3456812 3457123 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S10 complement(3456812..3457123) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615080.1 CDS IA1_16690 NC_022525.1 3457503 3457970 D Derived by automated computational analysis using gene prediction method: Protein Homology.; leader peptidase hopD 3457503..3457970 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615081.1 CDS IA1_16695 NC_022525.1 3457967 3458443 R iron storage protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; bacterioferritin complement(3457967..3458443) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615082.1 CDS IA1_16700 NC_022525.1 3458516 3458710 R Derived by automated computational analysis using gene prediction method: Protein Homology.; bacterioferritin-associated ferredoxin complement(3458516..3458710) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615083.1 CDS tuf NC_022525.1 3458895 3460079 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; elongation factor Tu complement(3458895..3460079) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615084.1 CDS fusA NC_022525.1 3460151 3462265 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor G complement(3460151..3462265) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615085.1 CDS IA1_16715 NC_022525.1 3462362 3462832 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S7 complement(3462362..3462832) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615086.1 CDS IA1_16720 NC_022525.1 3462928 3463302 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S12 complement(3462928..3463302) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615087.1 CDS IA1_16725 NC_022525.1 3463428 3463715 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur transfer complex subunit TusB complement(3463428..3463715) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615088.1 CDS IA1_16730 NC_022525.1 3463723 3464079 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur transfer that results in thiouridation to U34 position in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur relay protein TusC complement(3463723..3464079) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615089.1 CDS IA1_16735 NC_022525.1 3464079 3464465 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur transfer complex subunit TusD complement(3464079..3464465) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615090.1 CDS IA1_16740 NC_022525.1 3464465 3465187 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3464465..3465187) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615091.1 CDS IA1_16745 NC_022525.1 3465464 3466282 R rotamase; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(3465464..3466282) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615092.1 CDS IA1_16750 NC_022525.1 3466502 3466720 D required for phi X174 lysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysis protein 3466502..3466720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615093.1 CDS IA1_16755 NC_022525.1 3466912 3467502 R rotamase; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(3466912..3467502) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615094.1 CDS IA1_16760 NC_022525.1 3467597 3467797 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3467597..3467797) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615095.1 CDS IA1_16765 NC_022525.1 3467807 3469612 R transport system that facilitates potassium-efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter complement(3467807..3469612) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615096.1 CDS IA1_16770 NC_022525.1 3469612 3470163 R required for KefB activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter complement(3469612..3470163) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615097.1 CDS IA1_16775 NC_022525.1 3470429 3472336 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein 3470429..3472336 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615098.1 CDS IA1_16780 NC_022525.1 3472499 3472720 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter ATPase 3472499..3472720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615099.1 CDS IA1_16785 NC_022525.1 3472722 3473033 R Derived by automated computational analysis using gene prediction method: Protein Homology.; monooxygenase complement(3472722..3473033) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615100.1 CDS IA1_16790 NC_022525.1 3473231 3474298 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 3473231..3474298 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615101.1 CDS IA1_16795 NC_022525.1 3474295 3474513 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3474295..3474513 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615102.1 CDS IA1_16800 NC_022525.1 3474565 3475434 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribulokinase 3474565..3475434 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615103.1 CDS IA1_16805 NC_022525.1 3475530 3475934 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3475530..3475934) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615104.1 CDS IA1_16810 NC_022525.1 3476242 3476874 D cAMP receptor protein; complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3476242..3476874 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615105.1 CDS IA1_16815 NC_022525.1 3476923 3479010 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3476923..3479010 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615106.1 CDS argD NC_022525.1 3479053 3480270 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyldiaminopimelate aminotransferase complement(3479053..3480270) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615107.1 CDS IA1_16825 NC_022525.1 3480356 3480919 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; anthranilate synthase subunit II complement(3480356..3480919) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615108.1 CDS IA1_16830 NC_022525.1 3480951 3481553 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell filamentation protein Fic complement(3480951..3481553) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615109.1 CDS IA1_16835 NC_022525.1 3481543 3481815 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; antitoxin complement(3481543..3481815) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615110.1 CDS IA1_16840 NC_022525.1 3481819 3482391 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(3481819..3482391) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615111.1 CDS IA1_16845 NC_022525.1 3482668 3483849 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3482668..3483849 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615112.1 CDS IA1_16850 NC_022525.1 3484112 3486655 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; nitrite reductase subunit NirD 3484112..3486655 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615113.1 CDS nirD NC_022525.1 3486652 3486978 D involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; nitrite reductase small subunit 3486652..3486978 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615114.1 CDS IA1_16860 NC_022525.1 3487244 3488053 D member of the FNT family of formate and nitrite transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite transporter NirC 3487244..3488053 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615115.1 CDS cysG NC_022525.1 3488065 3489438 D multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin; Derived by automated computational analysis using gene prediction method: Protein Homology.; siroheme synthase 3488065..3489438 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615116.1 CDS IA1_16870 NC_022525.1 3489776 3495634 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; surface-exposed virulence protein BigA 3489776..3495634 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615117.1 CDS IA1_16875 NC_022525.1 3495827 3495997 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3495827..3495997 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615118.1 CDS IA1_16880 NC_022525.1 3496142 3497146 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophanyl-tRNA synthetase complement(3496142..3497146) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615119.1 CDS IA1_16885 NC_022525.1 3497139 3497897 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycolate phosphatase complement(3497139..3497897) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615120.1 CDS IA1_16890 NC_022525.1 3497890 3498567 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribulose-phosphate 3-epimerase complement(3497890..3498567) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615121.1 CDS IA1_16895 NC_022525.1 3498585 3499421 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA adenine methylase complement(3498585..3499421) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615122.1 CDS IA1_16900 NC_022525.1 3499602 3500879 R binds the septal ring; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein DamX complement(3499602..3500879) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615123.1 CDS aroB NC_022525.1 3500977 3502065 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-dehydroquinate synthase complement(3500977..3502065) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615124.1 CDS aroK NC_022525.1 3502122 3502643 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate kinase complement(3502122..3502643) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615125.1 CDS hofQ NC_022525.1 3503108 3504346 R outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin HofQ complement(3503108..3504346) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615126.1 CDS IA1_16920 NC_022525.1 3504261 3504662 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA utilization protein HofP complement(3504261..3504662) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615127.1 CDS IA1_16925 NC_022525.1 3504652 3505125 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3504652..3505125) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615128.1 CDS IA1_16930 NC_022525.1 3505109 3505648 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PilN family protein complement(3505109..3505648) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615129.1 CDS IA1_16935 NC_022525.1 3505648 3506427 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA utilization protein HofM complement(3505648..3506427) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615130.1 CDS mrcA NC_022525.1 3506548 3509100 D bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 1a 3506548..3509100 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615131.1 CDS nudE NC_022525.1 3509196 3509759 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosine nucleotide hydrolase complement(3509196..3509759) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615132.1 CDS IA1_16950 NC_022525.1 3510082 3512214 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Intracellular growth attenuator protein igaA 3510082..3512214 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615133.1 CDS IA1_16955 NC_022525.1 3512279 3512947 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotidase 3512279..3512947 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615134.1 CDS IA1_16960 NC_022525.1 3512958 3513359 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-associated heat shock protein Hsp15 3512958..3513359 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615135.1 CDS hslO NC_022525.1 3513378 3514262 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Derived by automated computational analysis using gene prediction method: Protein Homology.; Hsp33 chaperonin 3513378..3514262 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615136.1 CDS IA1_16970 NC_022525.1 3514373 3516082 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3514373..3516082) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615137.1 CDS IA1_16975 NC_022525.1 3516462 3518081 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate carboxykinase 3516462..3518081 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615138.1 CDS envZ NC_022525.1 3518156 3519508 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; Derived by automated computational analysis using gene prediction method: Protein Homology.; osmolarity sensor protein complement(3518156..3519508) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615139.1 CDS ompR NC_022525.1 3519505 3520224 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3519505..3520224) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615140.1 CDS greB NC_022525.1 3520450 3520923 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription elongation factor GreB 3520450..3520923 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615141.1 CDS IA1_16995 NC_022525.1 3521022 3523352 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription accessory protein 3521022..3523352 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615142.1 CDS feoA NC_022525.1 3523789 3524016 D Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 3523789..3524016 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615143.1 CDS feoB NC_022525.1 3524035 3526353 D cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 3524035..3526353 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615144.1 CDS IA1_17010 NC_022525.1 3526366 3526602 D regulatory protein that controls transcription of feoABC genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 3526366..3526602 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615145.1 CDS IA1_17015 NC_022525.1 3526837 3527751 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3526837..3527751 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615146.1 CDS IA1_17020 NC_022525.1 3527787 3528557 R Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxylesterase BioH complement(3527787..3528557) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615147.1 CDS IA1_17025 NC_022525.1 3528595 3529278 D required for utilization of DNA as the sole source of carbon and energy; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA utilization protein GntX 3528595..3529278 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615148.1 CDS IA1_17030 NC_022525.1 3529337 3529912 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe/S biogenesis protein NfuA 3529337..3529912 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615149.1 CDS IA1_17035 NC_022525.1 3530289 3531605 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Gnt-II system L-idonate transporter IdnT 3530289..3531605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615150.1 CDS malQ NC_022525.1 3531724 3533802 R amylomaltase; acts to release glucose from maltodextrins; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-alpha-glucanotransferase complement(3531724..3533802) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615151.1 CDS IA1_17045 NC_022525.1 3533812 3536205 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen phosphorylase complement(3533812..3536205) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615152.1 CDS IA1_17050 NC_022525.1 3536800 3539505 D Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3536800..3539505 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615153.1 CDS IA1_17055 NC_022525.1 3539647 3540207 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3539647..3540207) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615154.1 CDS IA1_17060 NC_022525.1 3540204 3541238 R catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA 3'-terminal-phosphate cyclase complement(3540204..3541238) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615155.1 CDS IA1_17065 NC_022525.1 3541242 3542456 R Derived by automated computational analysis using gene prediction method: Protein Homology.; RTCB protein complement(3541242..3542456) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615156.1 CDS IA1_17070 NC_022525.1 3542804 3544357 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RNA-binding protein complement(3542804..3544357) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615157.1 CDS IA1_17075 NC_022525.1 3544547 3546130 D with GlrK is part of a two-component signal transduction system regulating glmY; Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator 3544547..3546130 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615158.1 CDS IA1_17080 NC_022525.1 3546127 3546885 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator complement(3546127..3546885) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615159.1 CDS IA1_17085 NC_022525.1 3546979 3547809 R protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; Derived by automated computational analysis using gene prediction method: Protein Homology.; intramembrane serine protease GlpG complement(3546979..3547809) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615160.1 CDS IA1_17090 NC_022525.1 3547885 3548226 R Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate sulfurtransferase complement(3547885..3548226) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615161.1 CDS glpD NC_022525.1 3548410 3549918 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate dehydrogenase 3548410..3549918 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615162.1 CDS IA1_17100 NC_022525.1 3549965 3550510 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3549965..3550510) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615163.1 CDS IA1_17105 NC_022525.1 3550520 3552016 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphate-binding protein complement(3550520..3552016) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615164.1 CDS gldA NC_022525.1 3552174 3553283 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol dehydrogenase complement(3552174..3553283) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615165.1 CDS IA1_17115 NC_022525.1 3553624 3554955 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 2-ketogluconate transporter 3553624..3554955 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615166.1 CDS IA1_17120 NC_022525.1 3554952 3556667 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dihydroxy-acid dehydratase 3554952..3556667 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615167.1 CDS IA1_17125 NC_022525.1 3556711 3557616 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxy-galactonate aldolase 3556711..3557616 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615168.1 CDS IA1_17130 NC_022525.1 3557660 3558415 R Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator complement(3557660..3558415) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615169.1 CDS IA1_17135 NC_022525.1 3558593 3561040 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen phosphorylase complement(3558593..3561040) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615170.1 CDS glgA NC_022525.1 3561060 3562493 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen synthase complement(3561060..3562493) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615171.1 CDS glgC NC_022525.1 3562493 3563788 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-1-phosphate adenylyltransferase complement(3562493..3563788) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615172.1 CDS IA1_17150 NC_022525.1 3563803 3565779 R catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen-debranching protein complement(3563803..3565779) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615173.1 CDS IA1_17155 NC_022525.1 3565776 3567962 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen-branching protein complement(3565776..3567962) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615174.1 CDS IA1_17160 NC_022525.1 3568309 3569415 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate-semialdehyde dehydrogenase complement(3568309..3569415) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615175.1 CDS IA1_17165 NC_022525.1 3569838 3571178 R Derived by automated computational analysis using gene prediction method: Protein Homology.; gluconate transporter complement(3569838..3571178) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615176.1 CDS gntK NC_022525.1 3571175 3571708 R thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; gluconate kinase 1 complement(3571175..3571708) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615177.1 CDS IA1_17175 NC_022525.1 3571847 3572842 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3571847..3572842) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615178.1 CDS IA1_17180 NC_022525.1 3572972 3573667 R Derived by automated computational analysis using gene prediction method: Protein Homology.; quercetin 2,3-dioxygenase complement(3572972..3573667) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615179.1 CDS IA1_17185 NC_022525.1 3573791 3574828 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(3573791..3574828) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615180.1 CDS IA1_17190 NC_022525.1 3574887 3575012 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3574887..3575012 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615181.1 CDS IA1_17195 NC_022525.1 3575296 3575784 D YhhY; regulated by the fur regulator; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase 3575296..3575784 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615182.1 CDS IA1_17200 NC_022525.1 3575865 3575981 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3575865..3575981) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615183.1 CDS IA1_17205 NC_022525.1 3576049 3577263 D Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 3576049..3577263 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615184.1 CDS IA1_17210 NC_022525.1 3577279 3578040 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3577279..3578040 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615185.1 CDS IA1_17215 NC_022525.1 3578094 3579065 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3578094..3579065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615186.1 CDS IA1_17220 NC_022525.1 3579062 3580096 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotriesterase 3579062..3580096 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615187.1 CDS ggt NC_022525.1 3580141 3581883 R periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyltranspeptidase complement(3580141..3581883) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615188.1 CDS IA1_17230 NC_022525.1 3582009 3582425 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3582009..3582425 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615189.1 CDS ugpQ NC_022525.1 3582438 3583178 R hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoplasmic glycerophosphodiester phosphodiesterase complement(3582438..3583178) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615190.1 CDS ugpC NC_022525.1 3583175 3584245 R part of the UgpABCE glycerol-3-phosphate uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate ABC transporter ATP-binding protein complement(3583175..3584245) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615191.1 CDS IA1_17245 NC_022525.1 3584247 3585092 R with UgpABC is involved in uptake of glycerol-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate transporter membrane protein complement(3584247..3585092) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615192.1 CDS IA1_17250 NC_022525.1 3585089 3585976 R with UgpEC is involved in the uptake of glycerol-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate transporter permease complement(3585089..3585976) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615193.1 CDS IA1_17255 NC_022525.1 3586081 3587397 R with UgpACE is involved in the uptake of glycerol-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate ABC transporter substrate-binding protein complement(3586081..3587397) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615194.1 CDS IA1_17260 NC_022525.1 3587656 3588024 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3587656..3588024) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615195.1 CDS IA1_17265 NC_022525.1 3588021 3588248 R Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin complement(3588021..3588248) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615196.1 CDS livF NC_022525.1 3588374 3589087 R with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; amino acid ABC transporter ATP-binding protein complement(3588374..3589087) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615197.1 CDS livG NC_022525.1 3589089 3589856 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; amino acid ABC transporter ATP-binding protein complement(3589089..3589856) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615198.1 CDS livM NC_022525.1 3589853 3591130 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucine/isoleucine/valine transporter permease subunit complement(3589853..3591130) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615199.1 CDS IA1_17285 NC_022525.1 3591127 3592053 R LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid transporter permease subunit LivH complement(3591127..3592053) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615200.1 CDS IA1_17290 NC_022525.1 3592113 3593222 R with LivFGHM is involved in the high affinity leucine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein complement(3592113..3593222) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615201.1 CDS IA1_17295 NC_022525.1 3593644 3594027 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3593644..3594027 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615202.1 CDS IA1_17300 NC_022525.1 3594223 3595326 R with LivFGHM is involved in the high affinity leucine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein complement(3594223..3595326) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615203.1 CDS IA1_17305 NC_022525.1 3595648 3596502 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase factor sigma-32 complement(3595648..3596502) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615204.1 CDS ftsX NC_022525.1 3596748 3597803 R ABC transporter, membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cell division protein FtsX complement(3596748..3597803) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615205.1 CDS IA1_17315 NC_022525.1 3597796 3598464 R ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cell division protein FtsE complement(3597796..3598464) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615206.1 CDS IA1_17320 NC_022525.1 3598467 3599942 R cell division protein; signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsY complement(3598467..3599942) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615207.1 CDS rsmD NC_022525.1 3600068 3600664 D catalyzes the methylation of 16S rRNA at position G966; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 3600068..3600664 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615208.1 CDS IA1_17330 NC_022525.1 3600654 3600923 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3600654..3600923 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615209.1 CDS IA1_17335 NC_022525.1 3600945 3601316 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3600945..3601316) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615210.1 CDS IA1_17340 NC_022525.1 3601458 3602084 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3601458..3602084 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615211.1 CDS zntA NC_022525.1 3602165 3604363 D P-type ATPase involved in the export of lead, cadmium, zinc and mercury; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc/cadmium/mercury/lead-transporting ATPase 3602165..3604363 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615212.1 CDS IA1_17350 NC_022525.1 3604563 3606206 D Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein 3604563..3606206 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615213.1 CDS IA1_17355 NC_022525.1 3606230 3606565 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3606230..3606565) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615214.1 CDS IA1_17360 NC_022525.1 3606570 3607310 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3606570..3607310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615215.1 CDS IA1_17365 NC_022525.1 3607383 3607940 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3607383..3607940 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615216.1 CDS IA1_17370 NC_022525.1 3607944 3609161 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter complement(3607944..3609161) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615217.1 CDS tqsA NC_022525.1 3609293 3610342 D transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; pheromone autoinducer 2 transporter 3609293..3610342 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615218.1 CDS IA1_17380 NC_022525.1 3610394 3610972 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ACP synthase 3610394..3610972 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615219.1 CDS IA1_17385 NC_022525.1 3611028 3611465 D Inhibits transcription at high concentrations of nickel; Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel responsive regulator 3611028..3611465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615220.1 CDS IA1_17390 NC_022525.1 3611567 3612691 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3611567..3612691) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615221.1 CDS IA1_17395 NC_022525.1 3612691 3615432 R Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein complement(3612691..3615432) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615222.1 CDS IA1_17400 NC_022525.1 3615429 3616496 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3615429..3616496) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615223.1 CDS IA1_17405 NC_022525.1 3616802 3617998 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3616802..3617998) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615224.1 CDS IA1_17410 NC_022525.1 3618229 3619725 D involved in the transport of inorganic phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate transporter PitA 3618229..3619725 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615225.1 CDS IA1_17415 NC_022525.1 3619845 3620180 R ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein B complement(3619845..3620180) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615226.1 CDS IA1_17420 NC_022525.1 3620568 3621002 D involved in resistance to DNA-damaging agents; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein A 3620568..3621002 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615227.1 CDS IA1_17425 NC_022525.1 3621327 3622799 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 3621327..3622799 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615228.1 CDS IA1_17430 NC_022525.1 3622891 3623649 R predicted SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase complement(3622891..3623649) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615229.1 CDS IA1_17435 NC_022525.1 3623656 3625698 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oligopeptidase A complement(3623656..3625698) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615230.1 CDS IA1_17440 NC_022525.1 3625880 3627151 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoesterase PA-phosphatase complement(3625880..3627151) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615231.1 CDS IA1_17445 NC_022525.1 3627362 3628204 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3627362..3628204 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615232.1 CDS IA1_17450 NC_022525.1 3628309 3629661 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione reductase 3628309..3629661 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615233.1 CDS IA1_17455 NC_022525.1 3629708 3630751 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-asparaginase complement(3629708..3630751) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615234.1 CDS IA1_17460 NC_022525.1 3630810 3632129 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter complement(3630810..3632129) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615235.1 CDS IA1_17465 NC_022525.1 3632183 3633028 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; carbohydrate kinase complement(3632183..3633028) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615236.1 CDS IA1_17470 NC_022525.1 3633092 3634066 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphosugar isomerase complement(3633092..3634066) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615237.1 CDS IA1_17475 NC_022525.1 3634245 3634964 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator complement(3634245..3634964) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615238.1 CDS treF NC_022525.1 3635290 3636939 D cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalase 3635290..3636939 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615239.1 CDS IA1_17485 NC_022525.1 3636952 3638541 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3636952..3638541) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615240.1 CDS IA1_17490 NC_022525.1 3638822 3639178 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endolysin 3638822..3639178 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615241.1 CDS IA1_17495 NC_022525.1 3639184 3639786 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LuxR family transcriptional regulator complement(3639184..3639786) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615242.1 CDS IA1_17500 NC_022525.1 3640414 3641316 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 3640414..3641316 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615243.1 CDS IA1_17505 NC_022525.1 3641389 3642417 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3641389..3642417 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615244.1 CDS IA1_17510 NC_022525.1 3642768 3644090 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3642768..3644090 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615245.1 CDS IA1_17515 NC_022525.1 3644130 3646190 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3644130..3646190) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615246.1 CDS IA1_17520 NC_022525.1 3646300 3647067 R in Escherichia coli this protein is involved in flagellar function; Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase complement(3646300..3647067) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615247.1 CDS IA1_17525 NC_022525.1 3647296 3648225 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate-6-phosphate from 2-dehydro-3-deoxy-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ketodeoxygluconokinase 3647296..3648225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615248.1 CDS IA1_17530 NC_022525.1 3648279 3649766 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3648279..3649766) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615249.1 CDS IA1_17535 NC_022525.1 3649986 3651272 R involved in the transport of C4-dicarboxylates across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter complement(3649986..3651272) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615250.1 CDS IA1_17540 NC_022525.1 3651430 3653436 R HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; biofilm formation regulator HmsP complement(3651430..3653436) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615251.1 CDS IA1_17545 NC_022525.1 3653610 3657152 R cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; Derived by automated computational analysis using gene prediction method: Protein Homology.; cellulose synthase subunit BcsC complement(3653610..3657152) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615252.1 CDS IA1_17550 NC_022525.1 3657134 3658243 R catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease III complement(3657134..3658243) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615253.1 CDS IA1_17555 NC_022525.1 3658247 3660547 R binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP regulator CdgR complement(3658247..3660547) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615254.1 CDS bcsA NC_022525.1 3660558 3663182 R polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cellulose synthase catalytic subunit complement(3660558..3663182) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615255.1 CDS IA1_17565 NC_022525.1 3663179 3663931 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein complement(3663179..3663931) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615256.1 CDS IA1_17570 NC_022525.1 3663932 3664135 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3663932..3664135) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615257.1 CDS IA1_17575 NC_022525.1 3664392 3665951 D required for cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cellulose biosynthesis protein BcsE 3664392..3665951 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615258.1 CDS IA1_17580 NC_022525.1 3665948 3666139 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3665948..3666139 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615259.1 CDS IA1_17585 NC_022525.1 3666136 3667815 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3666136..3667815 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615260.1 CDS IA1_17590 NC_022525.1 3667897 3668004 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3667897..3668004) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615261.1 CDS IA1_17595 NC_022525.1 3668648 3669946 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3668648..3669946 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615262.1 CDS IA1_17605 NC_022525.1 3672051 3672953 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter complement(3672051..3672953) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615263.1 CDS IA1_17610 NC_022525.1 3672963 3673982 R transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(3672963..3673982) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615264.1 CDS IA1_17615 NC_022525.1 3674139 3675746 R DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein complement(3674139..3675746) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615265.1 CDS IA1_17620 NC_022525.1 3676302 3677627 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; nucleobase:cation symporter complement(3676302..3677627) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615266.1 CDS IA1_17625 NC_022525.1 3677685 3678809 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3677685..3678809) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615267.1 CDS IA1_17630 NC_022525.1 3678959 3679966 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family transcriptional regulator 3678959..3679966 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615268.1 CDS IA1_17640 NC_022525.1 3680277 3681968 R catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoethanolamine transferase complement(3680277..3681968) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615269.1 CDS IA1_17645 NC_022525.1 3682186 3682713 R Derived by automated computational analysis using gene prediction method: Protein Homology.; long polar fimbrial protein LpfE complement(3682186..3682713) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615270.1 CDS IA1_17650 NC_022525.1 3682719 3683798 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; long polar fimbrial protein LpfD complement(3682719..3683798) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615271.1 CDS IA1_17655 NC_022525.1 3683816 3686344 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial outer membrane usher protein SthC complement(3683816..3686344) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615272.1 CDS IA1_17660 NC_022525.1 3686367 3687065 R involved in type 1 fimbriae biosynthesis, interacts with FimH; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone protein FimC complement(3686367..3687065) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615273.1 CDS fimA NC_022525.1 3687150 3687674 R Derived by automated computational analysis using gene prediction method: Protein Homology.; type-1 fimbrial protein subunit A complement(3687150..3687674) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615274.1 CDS IA1_17670 NC_022525.1 3688034 3688138 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3688034..3688138) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615275.1 CDS IA1_17675 NC_022525.1 3688192 3688896 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3688192..3688896) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615276.1 CDS IA1_17680 NC_022525.1 3689053 3689634 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-3-methyladenine glycosylase 3689053..3689634 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615277.1 CDS IA1_17685 NC_022525.1 3689612 3690052 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acetyltransferase 3689612..3690052 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615278.1 CDS bisC NC_022525.1 3690021 3692354 R catalyzes the formation of biotin from biotin sulfoxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin sulfoxide reductase complement(3690021..3692354) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615279.1 CDS IA1_17695 NC_022525.1 3692507 3693169 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein 3692507..3693169 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615280.1 CDS IA1_17700 NC_022525.1 3693388 3694362 D catalyzes the formation of glycolate from glyoxylate and glycerate from hydroxypyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glyoxylate/hydroxypyruvate reductase B 3693388..3694362 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615281.1 CDS IA1_17705 NC_022525.1 3694412 3695122 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3694412..3695122) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615282.1 CDS IA1_17710 NC_022525.1 3695561 3695851 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3695561..3695851 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615283.1 CDS IA1_17715 NC_022525.1 3696139 3696351 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein 3696139..3696351 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615284.1 CDS IA1_17720 NC_022525.1 3696524 3697063 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3696524..3697063 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615285.1 CDS IA1_17725 NC_022525.1 3697437 3697922 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; N-acetyltransferase GCN5 complement(3697437..3697922) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615286.1 CDS IA1_17730 NC_022525.1 3697910 3698197 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3697910..3698197) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615287.1 CDS IA1_17735 NC_022525.1 3698375 3698842 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acetyltransferase complement(3698375..3698842) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615288.1 CDS IA1_17740 NC_022525.1 3699248 3699487 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3699248..3699487) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615289.1 CDS glyS NC_022525.1 3699802 3701871 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycyl-tRNA synthetase complement(3699802..3701871) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615290.1 CDS IA1_17750 NC_022525.1 3701881 3702792 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycyl-tRNA synthetase complement(3701881..3702792) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615291.1 CDS IA1_17755 NC_022525.1 3702931 3703233 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(3702931..3703233) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615292.1 CDS IA1_17760 NC_022525.1 3703399 3704394 D involved in enterobacterial common antigen biosynthesis; catalyzes the addition of O-acetyl groups to the N-acetyl-D-glucosamine residues of the trisaccharide repeat units of the enterobacterial common antigen; Derived by automated computational analysis using gene prediction method: Protein Homology.; O-acetyltransferase 3703399..3704394 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615293.1 CDS IA1_17765 NC_022525.1 3704417 3704770 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(3704417..3704770) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615294.1 CDS IA1_17770 NC_022525.1 3704945 3706399 R catalyzes the formation of D-xylulose-5-phosphate fro D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology.; xylulokinase complement(3704945..3706399) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615295.1 CDS IA1_17775 NC_022525.1 3706499 3707821 R catalyzes the interconversion of D-xylose to D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology.; xylose isomerase complement(3706499..3707821) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615296.1 CDS IA1_17780 NC_022525.1 3708184 3709362 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 3708184..3709362 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615297.1 CDS IA1_17785 NC_022525.1 3709423 3709995 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase complement(3709423..3709995) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615298.1 CDS IA1_17790 NC_022525.1 3710192 3710563 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3710192..3710563 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615299.1 CDS malS NC_022525.1 3710563 3712590 D periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-amylase 3710563..3712590 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615300.1 CDS avtA NC_022525.1 3712764 3714014 D transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; valine--pyruvate aminotransferase 3712764..3714014 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615301.1 CDS IA1_17805 NC_022525.1 3714051 3714524 R Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter complement(3714051..3714524) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615302.1 CDS IA1_17810 NC_022525.1 3714641 3715441 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3714641..3715441) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615303.1 CDS IA1_17815 NC_022525.1 3715671 3716669 D NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 2,3-diketo-L-gulonate reductase 3715671..3716669 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615304.1 CDS IA1_17820 NC_022525.1 3716681 3717145 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3716681..3717145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615305.1 CDS IA1_17825 NC_022525.1 3717169 3718110 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3717169..3718110 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615306.1 CDS IA1_17830 NC_022525.1 3718239 3718712 D membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3-diketo-L-gulonate TRAP transporter permease 3718239..3718712 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615307.1 CDS IA1_17835 NC_022525.1 3718715 3719992 D TRAP family transporter; with YiaMO is involved in the uptake of L-dehydroascorbate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dehydroascorbate transporter 3718715..3719992 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615308.1 CDS IA1_17840 NC_022525.1 3720004 3720990 D involved in the transport of 2,3-diketo-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter substrate-binding protein 3720004..3720990 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615309.1 CDS IA1_17845 NC_022525.1 3720994 3722490 D catalyzes the formation of L-xylulose 5-phosphate and 3-dehydro-L-gulonate 6-phosphate from L-xylulose or 3-dehydro-L-gulonate, respectively; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-xylulose/3-keto-L-gulonate kinase 3720994..3722490 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615310.1 CDS ulaD NC_022525.1 3722487 3723149 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-keto-L-gulonate-6-phosphate decarboxylase 3722487..3723149 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615311.1 CDS IA1_17855 NC_022525.1 3723142 3724002 D L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; L-xylulose 5-phosphate 3-epimerase 3723142..3724002 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615312.1 CDS araD NC_022525.1 3723996 3724691 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ribulose-5-phosphate 4-epimerase 3723996..3724691 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615313.1 CDS IA1_17865 NC_022525.1 3724852 3725667 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3724852..3725667) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615314.1 CDS IA1_17870 NC_022525.1 3725931 3727886 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl hydrolase 3725931..3727886 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615315.1 CDS IA1_17875 NC_022525.1 3728060 3729598 R catalyzes the oxidation of acetaldehyde, benzaldehyde, propionaldehyde and other aldehydes; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase complement(3728060..3729598) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615316.1 CDS IA1_17880 NC_022525.1 3729767 3730648 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar kinase 3729767..3730648 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615317.1 CDS IA1_17885 NC_022525.1 3730897 3732747 R Derived by automated computational analysis using gene prediction method: Protein Homology.; translation elongation factor complement(3730897..3732747) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615318.1 CDS IA1_17890 NC_022525.1 3732744 3734135 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; selenocysteine synthase complement(3732744..3734135) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615319.1 CDS IA1_17895 NC_022525.1 3734234 3734842 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase complement(3734234..3734842) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615320.1 CDS IA1_17900 NC_022525.1 3734940 3736076 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(3734940..3736076) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615321.1 CDS IA1_17905 NC_022525.1 3736079 3736441 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3736079..3736441) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615322.1 CDS IA1_17910 NC_022525.1 3736975 3738891 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; subunit IIC forms the translocation channel and contains the specific substrate-binding site; subunit IIA is phosphorylated and transfers the phosphoryl group to the IIB subunit; subunit IIB transfers the phosphoryl group to the substrate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS mannitol transporter subunit IIABC 3736975..3738891 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615323.1 CDS IA1_17915 NC_022525.1 3739112 3740260 D Derived by automated computational analysis using gene prediction method: Protein Homology.; mannitol-1-phosphate 5-dehydrogenase 3739112..3740260 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615324.1 CDS mtlR NC_022525.1 3740257 3740847 D Acts as a repressor of the mtlAD operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannitol repressor protein 3740257..3740847 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615325.1 CDS IA1_17925 NC_022525.1 3740857 3741066 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3740857..3741066) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615326.1 CDS IA1_17930 NC_022525.1 3741357 3741719 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3741357..3741719 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615327.1 CDS IA1_17935 NC_022525.1 3742207 3742890 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3742207..3742890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615328.1 CDS IA1_17945 NC_022525.1 3747029 3748684 D Derived by automated computational analysis using gene prediction method: Protein Homology.; L-lactate permease 3747029..3748684 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615329.1 CDS IA1_17950 NC_022525.1 3748681 3749457 D represses the lctPRD operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3748681..3749457 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615330.1 CDS lldD NC_022525.1 3749454 3750644 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-lactate dehydrogenase 3749454..3750644 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615331.1 CDS IA1_17960 NC_022525.1 3750708 3751181 D member of the SPOUT superfamily of RNA methyltransferases; Derived by automated computational analysis using gene prediction method: Protein Homology.; rRNA methyltransferase 3750708..3751181 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615332.1 CDS IA1_17965 NC_022525.1 3751249 3752301 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator complement(3751249..3752301) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615333.1 CDS IA1_17970 NC_022525.1 3752572 3753768 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MdlA 3752572..3753768 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615334.1 CDS IA1_17975 NC_022525.1 3753842 3755152 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate transporter 3753842..3755152 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615335.1 CDS cysE NC_022525.1 3755235 3756056 R catalyzes the O-acetylation of serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine acetyltransferase complement(3755235..3756056) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615336.1 CDS IA1_17985 NC_022525.1 3756134 3757153 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3756134..3757153) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615337.1 CDS IA1_17990 NC_022525.1 3757153 3757620 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; preprotein translocase subunit SecB complement(3757153..3757620) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615338.1 CDS IA1_17995 NC_022525.1 3757664 3757915 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin complement(3757664..3757915) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615339.1 CDS IA1_18000 NC_022525.1 3758001 3758432 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3758001..3758432) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615340.1 CDS IA1_18005 NC_022525.1 3758680 3760224 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglyceromutase 3758680..3760224 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615341.1 CDS IA1_18010 NC_022525.1 3760234 3761517 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M37 3760234..3761517 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615342.1 CDS IA1_18015 NC_022525.1 3761521 3762483 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3761521..3762483 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615343.1 CDS IA1_18020 NC_022525.1 3762470 3763504 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase complement(3762470..3763504) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615344.1 CDS tdh NC_022525.1 3763797 3764822 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-threonine 3-dehydrogenase complement(3763797..3764822) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615345.1 CDS IA1_18030 NC_022525.1 3764832 3766028 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-amino-3-ketobutyrate CoA ligase complement(3764832..3766028) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615346.1 CDS rfaD NC_022525.1 3766231 3767163 D catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-L-glycero-D-mannoheptose-6-epimerase 3766231..3767163 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615347.1 CDS IA1_18040 NC_022525.1 3767166 3768212 D catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ADP-heptose:LPS heptosyl transferase 3767166..3768212 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615348.1 CDS IA1_18045 NC_022525.1 3768212 3769165 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-heptose:LPS heptosyl transferase 3768212..3769165 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615349.1 CDS IA1_18050 NC_022525.1 3769205 3770419 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ligase 3769205..3770419 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615350.1 CDS IA1_18055 NC_022525.1 3770476 3771621 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide 1,2-N-acetylglucosaminetransferase complement(3770476..3771621) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615351.1 CDS IA1_18060 NC_022525.1 3771721 3772530 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core biosynthesis protein complement(3771721..3772530) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615352.1 CDS IA1_18065 NC_022525.1 3772680 3773378 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3772680..3773378) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615353.1 CDS IA1_18070 NC_022525.1 3773401 3774414 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide 1,2-glucosyltransferase complement(3773401..3774414) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615354.1 CDS IA1_18075 NC_022525.1 3774432 3775445 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide 1,3-galactosyltransferase complement(3774432..3775445) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615355.1 CDS IA1_18080 NC_022525.1 3775451 3776530 R Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase complement(3775451..3776530) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615356.1 CDS IA1_18085 NC_022525.1 3776600 3776809 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(3776600..3776809) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615357.1 CDS IA1_18090 NC_022525.1 3776865 3777662 R catalyzes the phosphorylation of heptose I in the lipopolysaccharide core; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core heptose(I) kinase RfaP complement(3776865..3777662) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615358.1 CDS IA1_18095 NC_022525.1 3777655 3778779 R catalyzes the addition of the first glucose residue to the LPS core; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosyltransferase complement(3777655..3778779) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615359.1 CDS IA1_18100 NC_022525.1 3778776 3779810 R catalyzes the transfer of heptose(III) to heptose(II) in the lipopolysaccharide inner core; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core heptosyltransferase RfaQ complement(3778776..3779810) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615360.1 CDS IA1_18105 NC_022525.1 3780255 3781532 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-D-manno-octulosonic acid transferase 3780255..3781532 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615361.1 CDS coaD NC_022525.1 3781541 3782020 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopantetheine adenylyltransferase 3781541..3782020 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615362.1 CDS IA1_18115 NC_022525.1 3782048 3782857 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-hydroxymethyluracil DNA glycosylase complement(3782048..3782857) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615363.1 CDS rpmG NC_022525.1 3782955 3783122 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L33 complement(3782955..3783122) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615364.1 CDS IA1_18125 NC_022525.1 3783143 3783343 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 50S ribosomal protein L28 complement(3783143..3783343) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615365.1 CDS IA1_18130 NC_022525.1 3783597 3784262 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3783597..3784262) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615366.1 CDS IA1_18135 NC_022525.1 3784438 3785658 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopantothenoylcysteine decarboxylase 3784438..3785658 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615367.1 CDS IA1_18140 NC_022525.1 3785636 3786094 D catalyzes the formation of dUMP from dUTP; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyuridine 5'-triphosphate nucleotidohydrolase 3785636..3786094 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615368.1 CDS slmA NC_022525.1 3786202 3786798 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; division inhibitor protein 3786202..3786798 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615369.1 CDS pyrE NC_022525.1 3786876 3787517 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; orotate phosphoribosyltransferase complement(3786876..3787517) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615370.1 CDS rph NC_022525.1 3787596 3788312 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease PH complement(3787596..3788312) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615371.1 CDS IA1_18160 NC_022525.1 3788438 3789301 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3788438..3789301 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615372.1 CDS IA1_18165 NC_022525.1 3789351 3790253 R Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein complement(3789351..3790253) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615373.1 CDS IA1_18170 NC_022525.1 3790327 3791208 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Zn-dependent hydrolase 3790327..3791208 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615374.1 CDS IA1_18175 NC_022525.1 3791459 3792076 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3791459..3792076 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615375.1 CDS IA1_18180 NC_022525.1 3792073 3793758 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA ligase complement(3792073..3793758) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615376.1 CDS gmk NC_022525.1 3794015 3794638 D Essential for recycling GMP and indirectly, cGMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; guanylate kinase 3794015..3794638 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615377.1 CDS rpoZ NC_022525.1 3794693 3794968 D Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit omega 3794693..3794968 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615378.1 CDS IA1_18195 NC_022525.1 3794987 3797098 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3794987..3797098 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615379.1 CDS IA1_18200 NC_022525.1 3797103 3797792 D specifically modifies tRNA at position G18; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA methyltransferase 3797103..3797792 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615380.1 CDS IA1_18205 NC_022525.1 3797798 3799879 D catalyzes branch migration in Holliday junction intermediates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase RecG 3797798..3799879 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615381.1 CDS IA1_18210 NC_022525.1 3799915 3801120 R is involved with the sodium-dependent uptake of glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium/glutamate symport carrier protein GltS complement(3799915..3801120) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615382.1 CDS IA1_18215 NC_022525.1 3801348 3802739 D high-affinity transporter for xanthine; Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine permease 3801348..3802739 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615383.1 CDS IA1_18220 NC_022525.1 3802860 3804569 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3802860..3804569 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615384.1 CDS IA1_18225 NC_022525.1 3804672 3806990 R catalyzes the transfer of alpha-xylosyl residue; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-glucosidase complement(3804672..3806990) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615385.1 CDS IA1_18230 NC_022525.1 3807002 3808384 R may be involved in the transport of galactosides-pentoses-hexuronides; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(3807002..3808384) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615386.1 CDS IA1_18240 NC_022525.1 3810389 3811006 D Derived by automated computational analysis using gene prediction method: Protein Homology.; RmbA 3810389..3811006 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615387.1 CDS IA1_18245 NC_022525.1 3811081 3813933 D binds fibronectin; adhesin involved in intestinal colonization; Derived by automated computational analysis using gene prediction method: Protein Homology.; autotransporter MisL 3811081..3813933 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615388.1 CDS IA1_18250 NC_022525.1 3814028 3814510 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3814028..3814510) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615389.1 CDS IA1_18255 NC_022525.1 3814503 3815291 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3814503..3815291) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615390.1 CDS IA1_18260 NC_022525.1 3816144 3816824 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinamidase 3816144..3816824 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615391.1 CDS IA1_18265 NC_022525.1 3817053 3817532 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3817053..3817532) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615392.1 CDS IA1_18270 NC_022525.1 3817733 3817825 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3817733..3817825) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615393.1 CDS IA1_18275 NC_022525.1 3817847 3820573 R P-type; involved in magnesium transport into the cytoplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium-transporting ATPase complement(3817847..3820573) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615394.1 CDS IA1_18280 NC_022525.1 3820793 3821488 R may activate Na/K-ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium transporter complement(3820793..3821488) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615395.1 CDS IA1_18285 NC_022525.1 3821949 3822896 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3821949..3822896 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615396.1 CDS IA1_18290 NC_022525.1 3822939 3823880 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3822939..3823880) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615397.1 CDS IA1_18295 NC_022525.1 3824116 3824859 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-2-ketovalerate aldolase complement(3824116..3824859) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615398.1 CDS IA1_18300 NC_022525.1 3824846 3825955 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-seryl-tRNA selenium transferase complement(3824846..3825955) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615399.1 CDS IA1_18305 NC_022525.1 3825959 3826816 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IID complement(3825959..3826816) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615400.1 CDS IA1_18310 NC_022525.1 3826816 3827565 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sorbose transporter subunit IIC complement(3826816..3827565) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615401.1 CDS IA1_18315 NC_022525.1 3827711 3828196 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter complement(3827711..3828196) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615402.1 CDS IA1_18320 NC_022525.1 3828207 3828632 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIA complement(3828207..3828632) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615403.1 CDS IA1_18325 NC_022525.1 3828851 3831649 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3828851..3831649) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615404.1 CDS IA1_18330 NC_022525.1 3831846 3832139 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3831846..3832139 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615405.1 CDS IA1_18335 NC_022525.1 3832245 3833627 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phospho-beta-glucosidase 3832245..3833627 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615406.1 CDS nepI NC_022525.1 3833687 3834880 R experimental results in Escherichia coli suggest that this gene encodes an inosine export protein; member of major facilitator superfamily; MFS; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ribonucleoside transporter complement(3833687..3834880) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615407.1 CDS IA1_18345 NC_022525.1 3835096 3835455 D Derived by automated computational analysis using gene prediction method: Protein Homology.; RelE family toxin-antitoxin system 3835096..3835455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615408.1 CDS IA1_18350 NC_022525.1 3835439 3835762 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA-binding protein 3835439..3835762 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615409.1 CDS IA1_18355 NC_022525.1 3835947 3836726 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3835947..3836726 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615410.1 CDS IA1_18360 NC_022525.1 3836754 3836969 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3836754..3836969) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615411.1 CDS IA1_18365 NC_022525.1 3837077 3837346 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter complement(3837077..3837346) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615412.1 CDS gatY NC_022525.1 3837356 3838216 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase complement(3837356..3838216) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615413.1 CDS IA1_18375 NC_022525.1 3838279 3839763 R Derived by automated computational analysis using gene prediction method: Protein Homology.; carbohydrate kinase complement(3838279..3839763) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615414.1 CDS gatC NC_022525.1 3839756 3841114 R with GatAB forms a phosphoenolpyruvate-dependent sugar phosphotransferase transporter for galactitol; subunit IIC forms the translocation channel and contains the substrate binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS galactitol transporter subunit IIC complement(3839756..3841114) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615415.1 CDS IA1_18385 NC_022525.1 3841190 3841477 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIB complement(3841190..3841477) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615416.1 CDS IA1_18390 NC_022525.1 3841474 3841947 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS suar transporter subunit IIA complement(3841474..3841947) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615417.1 CDS IA1_18395 NC_022525.1 3841965 3842708 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3841965..3842708) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615418.1 CDS IA1_18400 NC_022525.1 3843085 3843537 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3843085..3843537) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615419.1 CDS IA1_18405 NC_022525.1 3843536 3843625 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3843536..3843625 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615420.1 CDS uhpT NC_022525.1 3843730 3845121 R cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter complement(3843730..3845121) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615421.1 CDS IA1_18415 NC_022525.1 3845264 3846592 R membrane protein regulates uhpT expression; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein complement(3845264..3846592) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615422.1 CDS IA1_18420 NC_022525.1 3846602 3848104 R Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase complement(3846602..3848104) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615423.1 CDS IA1_18425 NC_022525.1 3848104 3848694 R response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3848104..3848694) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615424.1 CDS IA1_18430 NC_022525.1 3848769 3849782 R Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyribose mutarotase complement(3848769..3849782) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615425.1 CDS IA1_18435 NC_022525.1 3849794 3851110 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar:proton symporter complement(3849794..3851110) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615426.1 CDS IA1_18440 NC_022525.1 3851141 3852061 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribokinase complement(3851141..3852061) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615427.1 CDS IA1_18445 NC_022525.1 3852386 3853171 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3852386..3853171 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615428.1 CDS IA1_18450 NC_022525.1 3853173 3853463 R with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase complement(3853173..3853463) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615429.1 CDS IA1_18455 NC_022525.1 3853467 3855155 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase complement(3853467..3855155) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615430.1 CDS IA1_18460 NC_022525.1 3855994 3856083 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3855994..3856083 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615431.1 CDS IA1_18465 NC_022525.1 3856203 3857036 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3856203..3857036 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615432.1 CDS emrD NC_022525.1 3857239 3858423 D multidrug efflux protein involved in adaptation to low energy shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein D 3857239..3858423 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615433.1 CDS IA1_18475 NC_022525.1 3858350 3859435 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3858350..3859435) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615434.1 CDS IA1_18480 NC_022525.1 3859499 3860437 R regulates the synthesis and expression of the dsdXA operon and dadA gene; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3859499..3860437) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615435.1 CDS IA1_18485 NC_022525.1 3860648 3861985 D member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 3860648..3861985 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615436.1 CDS IA1_18490 NC_022525.1 3862003 3863325 D catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-serine dehydratase 3862003..3863325 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615437.1 CDS IA1_18495 NC_022525.1 3863407 3863937 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3863407..3863937) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615438.1 CDS IA1_18500 NC_022525.1 3863934 3864296 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(3863934..3864296) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615439.1 CDS IA1_18505 NC_022525.1 3864286 3864633 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(3864286..3864633) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615440.1 CDS IA1_18510 NC_022525.1 3864653 3864787 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3864653..3864787) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615441.1 CDS IA1_18515 NC_022525.1 3864934 3865080 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3864934..3865080 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615442.1 CDS IA1_18520 NC_022525.1 3865077 3866738 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(3865077..3866738) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615443.1 CDS IA1_18525 NC_022525.1 3866927 3867361 R 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock chaperone IbpB complement(3866927..3867361) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615444.1 CDS IA1_18530 NC_022525.1 3867465 3867884 R with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein IbpA complement(3867465..3867884) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615445.1 CDS IA1_18535 NC_022525.1 3868230 3868520 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3868230..3868520 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615446.1 CDS IA1_18540 NC_022525.1 3868522 3869748 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3868522..3869748) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615447.1 CDS IA1_18545 NC_022525.1 3869870 3870913 R cytochrome c-type biogenesis protein; involved in the attachment of heme to cytochrome c; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme lyase subunit CcmH complement(3869870..3870913) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615448.1 CDS IA1_18550 NC_022525.1 3870910 3871467 R cytochrome c-type biogenesis thioredoxin; involved in the reduction of disulfide bonds to allow heme bonding; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol:disulfide interchange protein complement(3870910..3871467) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615449.1 CDS IA1_18555 NC_022525.1 3873393 3873872 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C biogenesis protein complement(3873393..3873872) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615450.1 CDS IA1_18560 NC_022525.1 3873869 3874081 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3873869..3874081) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615451.1 CDS IA1_18565 NC_022525.1 3874078 3874815 R with CcmABDE is involved in the transport of protoheme IX; CcmC is required for heme transfer to CcmE; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter permease complement(3874078..3874815) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615452.1 CDS IA1_18570 NC_022525.1 3874867 3875526 R with CcmABCE is involved in the transport of protoheme IX; CcmB is required for the release of holoCcmE from CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter permease complement(3874867..3875526) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615453.1 CDS IA1_18575 NC_022525.1 3875523 3876149 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cytochrome C biogenesis protein CcmA complement(3875523..3876149) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615454.1 CDS IA1_18580 NC_022525.1 3876146 3877546 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C peroxidase complement(3876146..3877546) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615455.1 CDS torD NC_022525.1 3877736 3878368 R TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone protein TorD complement(3877736..3878368) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615456.1 CDS IA1_18590 NC_022525.1 3878361 3880913 R catalyzes the reduction of trimethylamine-N-oxide to form trimethylamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; trimethylamine N-oxide reductase I catalytic subunit complement(3878361..3880913) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615457.1 CDS IA1_18595 NC_022525.1 3880903 3882087 R with TorA forms the inducible trimethylamine N-oxide reductase which transfers electrons from menaquinones first to TorC then to TorA; Derived by automated computational analysis using gene prediction method: Protein Homology.; trimethylamine N-oxide reductase cytochrome C subunit complement(3880903..3882087) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615458.1 CDS IA1_18600 NC_022525.1 3882181 3882909 D Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheY 3882181..3882909 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615459.1 CDS IA1_18605 NC_022525.1 3882882 3883922 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; TMAO reductase complement(3882882..3883922) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615460.1 CDS IA1_18610 NC_022525.1 3884002 3886737 D Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase 3884002..3886737 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615461.1 CDS IA1_18615 NC_022525.1 3886763 3888061 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate transporter complement(3886763..3888061) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615462.1 CDS IA1_18620 NC_022525.1 3888185 3889333 R Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate dehydratase complement(3888185..3889333) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615463.1 CDS IA1_18625 NC_022525.1 3889330 3889947 R catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase complement(3889330..3889947) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615464.1 CDS IA1_18630 NC_022525.1 3889931 3890809 R catalyzes the formation of 2-dehydro-3-deoxy-D-galactonate 6-phosphate from 2-dehydro-3-deoxy-D-galactonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxo-3-deoxygalactonate kinase complement(3889931..3890809) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615465.1 CDS IA1_18635 NC_022525.1 3890806 3891495 R Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate operon transcriptional repressor complement(3890806..3891495) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615466.1 CDS IA1_18640 NC_022525.1 3891756 3892601 R YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar phosphate phosphatase complement(3891756..3892601) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615467.1 CDS IA1_18645 NC_022525.1 3892908 3894170 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3892908..3894170 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615468.1 CDS IA1_18650 NC_022525.1 3894187 3895377 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MR-MLE family protein 3894187..3895377 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615469.1 CDS IA1_18655 NC_022525.1 3895492 3896388 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 3895492..3896388 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615470.1 CDS gyrB NC_022525.1 3896407 3898821 R negatively supercoils closed circular double-stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase subunit B complement(3896407..3898821) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615471.1 CDS recF NC_022525.1 3898850 3899923 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase F complement(3898850..3899923) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615472.1 CDS IA1_18670 NC_022525.1 3900071 3901171 R binds the polymerase to DNA and acts as a sliding clamp; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit beta complement(3900071..3901171) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615473.1 CDS dnaA NC_022525.1 3901176 3902576 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself; Derived by automated computational analysis using gene prediction method: Protein Homology.; chromosomal replication initiation protein complement(3901176..3902576) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615474.1 CDS rnpA NC_022525.1 3903394 3903753 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease P 3903394..3903753 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615475.1 CDS IA1_18685 NC_022525.1 3903977 3905623 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein insertase 3903977..3905623 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615476.1 CDS trmE NC_022525.1 3905725 3907128 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA modification GTPase TrmE 3905725..3907128 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615477.1 CDS IA1_18695 NC_022525.1 3907311 3908498 D Confers resistance to chloramphenicol; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 3907311..3908498 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615478.1 CDS IA1_18700 NC_022525.1 3908467 3909426 D Involved in anaerobic NO protection; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3908467..3909426 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615479.1 CDS IA1_18705 NC_022525.1 3909584 3910339 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopantetheinyl transferase 3909584..3910339 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615480.1 CDS IA1_18710 NC_022525.1 3910357 3910923 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3910357..3910923 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615481.1 CDS IA1_18715 NC_022525.1 3910968 3912305 R involved in the transport or adenine; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine permease complement(3910968..3912305) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615482.1 CDS IA1_18720 NC_022525.1 3912474 3913139 D YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphogluconate phosphatase 3912474..3913139 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615483.1 CDS IA1_18725 NC_022525.1 3913234 3913959 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3913234..3913959) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615484.1 CDS IA1_18730 NC_022525.1 3913974 3914783 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphate ABC transporter ATP-binding protein complement(3913974..3914783) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615485.1 CDS pstA NC_022525.1 3914834 3915724 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate transporter permease subunit PtsA complement(3914834..3915724) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615486.1 CDS pstC NC_022525.1 3915724 3916683 R part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate transporter permease subunit PstC complement(3915724..3916683) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615487.1 CDS IA1_18745 NC_022525.1 3916819 3917859 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate ABC transporter substrate-binding protein complement(3916819..3917859) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615488.1 CDS IA1_18750 NC_022525.1 3918025 3919398 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIBC complement(3918025..3919398) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615489.1 CDS IA1_18755 NC_022525.1 3919447 3920265 R Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate 5-dehydrogenase complement(3919447..3920265) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615490.1 CDS IA1_18760 NC_022525.1 3920360 3922117 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein 3920360..3922117 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615491.1 CDS IA1_18765 NC_022525.1 3922268 3924097 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glucosamine--fructose-6-phosphate aminotransferase complement(3922268..3924097) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615492.1 CDS glmU NC_022525.1 3924286 3925656 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(3924286..3925656) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615493.1 CDS IA1_18780 NC_022525.1 3925976 3926674 R Derived by automated computational analysis using gene prediction method: Protein Homology.; permease complement(3925976..3926674) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615494.1 CDS atpC NC_022525.1 3926903 3927322 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit epsilon complement(3926903..3927322) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615495.1 CDS IA1_18795 NC_022525.1 3927343 3928725 R Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit beta complement(3927343..3928725) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615496.1 CDS IA1_18800 NC_022525.1 3928752 3929615 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit gamma complement(3928752..3929615) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615497.1 CDS IA1_18805 NC_022525.1 3929666 3931207 R Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit alpha complement(3929666..3931207) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615498.1 CDS IA1_18810 NC_022525.1 3931220 3931753 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit delta complement(3931220..3931753) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615499.1 CDS IA1_18815 NC_022525.1 3931768 3932238 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit B complement(3931768..3932238) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615500.1 CDS IA1_18820 NC_022525.1 3932298 3932537 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; F0F1 ATP synthase subunit C complement(3932298..3932537) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615501.1 CDS IA1_18825 NC_022525.1 3932584 3933399 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit A complement(3932584..3933399) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615502.1 CDS IA1_18830 NC_022525.1 3933408 3933635 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ATP synthase subunit I complement(3933408..3933635) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615503.1 CDS gidB NC_022525.1 3934404 3935033 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase complement(3934404..3935033) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615504.1 CDS gidA NC_022525.1 3935130 3937019 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA uridine 5-carboxymethylaminomethyl modification protein complement(3935130..3937019) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615505.1 CDS IA1_18845 NC_022525.1 3937398 3937871 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: Protein Homology.; FMN-binding protein MioC complement(3937398..3937871) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615506.1 CDS IA1_18850 NC_022525.1 3937931 3938389 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3937931..3938389) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615507.1 CDS IA1_18855 NC_022525.1 3938540 3939532 D catalyzes the formation of asparagine from aspartate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; asparagine synthetase AsnA 3938540..3939532 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615508.1 CDS yieM NC_022525.1 3939537 3940988 R contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; Derived by automated computational analysis using gene prediction method: Protein Homology.; protoheme IX farnesyltransferase complement(3939537..3940988) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615509.1 CDS IA1_18865 NC_022525.1 3940982 3942478 R interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory ATPase RavA complement(3940982..3942478) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615510.1 CDS trkD NC_022525.1 3942826 3944694 D Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter Kup 3942826..3944694 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615511.1 CDS IA1_18875 NC_022525.1 3944891 3945310 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-ribose pyranase 3944891..3945310 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615512.1 CDS IA1_18880 NC_022525.1 3945273 3946823 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-ribose transporter ATP binding protein 3945273..3946823 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615513.1 CDS rbsC NC_022525.1 3946829 3947794 D functions to transport ribose at high affinity; forms a complex with RbsA2C2B; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose ABC transporter permease 3946829..3947794 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615514.1 CDS IA1_18890 NC_022525.1 3947819 3948709 D periplasmic substrate-binding component of the ATP-dependent ribose transport system; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; D-ribose transporter subunit RbsB 3947819..3948709 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615515.1 CDS IA1_18895 NC_022525.1 3948842 3949771 D catalyzes the formation of D-ribose 5-phosphate from ribose; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribokinase 3948842..3949771 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615516.1 CDS IA1_18900 NC_022525.1 3949775 3950773 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family transcriptional regulator 3949775..3950773 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615517.1 CDS IA1_18905 NC_022525.1 3950739 3952166 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; major facilitator transporter complement(3950739..3952166) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615518.1 CDS IA1_18910 NC_022525.1 3952178 3952882 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator complement(3952178..3952882) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615519.1 CDS IA1_18945 NC_022525.1 3958772 3959608 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3958772..3959608) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615520.1 CDS IA1_18950 NC_022525.1 3959727 3960065 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3959727..3960065 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615521.1 CDS IA1_18955 NC_022525.1 3960090 3961610 R among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease complement(3960090..3961610) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615522.1 CDS IA1_18960 NC_022525.1 3962200 3963846 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 3962200..3963846 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615523.1 CDS ilvM NC_022525.1 3963843 3964106 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 3963843..3964106 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615524.1 CDS IA1_18970 NC_022525.1 3964124 3965053 D Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid aminotransferase 3964124..3965053 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615525.1 CDS IA1_18975 NC_022525.1 3965214 3967064 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dihydroxy-acid dehydratase 3965214..3967064 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615526.1 CDS IA1_18980 NC_022525.1 3967064 3968611 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine dehydratase 3967064..3968611 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615527.1 CDS IA1_18985 NC_022525.1 3968849 3969211 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3968849..3969211 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615528.1 CDS IA1_18990 NC_022525.1 3969208 3969549 D Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator 3969208..3969549 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615529.1 CDS IA1_18995 NC_022525.1 3969552 3970439 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3969552..3970439) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615530.1 CDS IA1_19000 NC_022525.1 3970603 3972078 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ketol-acid reductoisomerase 3970603..3972078 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615531.1 CDS IA1_19005 NC_022525.1 3972170 3972451 R rotamase C; accelerates isomerization of the peptidyl prolyl bond; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(3972170..3972451) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615532.1 CDS IA1_19010 NC_022525.1 3972555 3972803 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cyclic nucleotide-binding protein 3972555..3972803 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615533.1 CDS IA1_19015 NC_022525.1 3972989 3975013 D single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase Rep 3972989..3975013 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615534.1 CDS IA1_19020 NC_022525.1 3975053 3976534 R catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.; guanosine pentaphosphate phosphohydrolase complement(3975053..3976534) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615535.1 CDS IA1_19025 NC_022525.1 3976671 3977936 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase complement(3976671..3977936) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615536.1 CDS trxA NC_022525.1 3978080 3978409 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin 3978080..3978409 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615537.1 CDS rho NC_022525.1 3978828 3980087 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription termination factor Rho 3978828..3980087 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615538.1 CDS IA1_19040 NC_022525.1 3980082 3980285 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3980082..3980285) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615539.1 CDS IA1_19045 NC_022525.1 3980327 3981430 D catalyzes the formation of alpha-N-acetylglucosaminyl-pyrophosphoryl-undecaprenyl from alpha-N-acetylglucosaminyl 1-phosphate and the lipid carrier undecaprenyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 3980327..3981430 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615540.1 CDS IA1_19050 NC_022525.1 3981442 3982488 D Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide biosynthesis protein WzzE 3981442..3982488 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615541.1 CDS IA1_19055 NC_022525.1 3982544 3983674 D Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylglucosamine 2-epimerase 3982544..3983674 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615542.1 CDS wecC NC_022525.1 3983671 3984933 D catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetyl-D-mannosamine dehydrogenase 3983671..3984933 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615543.1 CDS IA1_19065 NC_022525.1 3984933 3986000 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dTDP-glucose 4,6-dehydratase 3984933..3986000 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615544.1 CDS IA1_19070 NC_022525.1 3986033 3986914 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-1-phosphate thymidylyltransferase 3986033..3986914 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615545.1 CDS IA1_19075 NC_022525.1 3986892 3987569 D Derived by automated computational analysis using gene prediction method: Protein Homology.; TDP-fucosamine acetyltransferase 3986892..3987569 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615546.1 CDS IA1_19080 NC_022525.1 3987574 3988704 D catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; TDP-4-oxo-6-deoxy-D-glucose aminotransferase 3987574..3988704 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615547.1 CDS IA1_19085 NC_022525.1 3988706 3989956 D involved in the movement of lipid III across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; translocase 3988706..3989956 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615548.1 CDS IA1_19090 NC_022525.1 3989953 3991032 D catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-alpha-L-fucosyltransferase 3989953..3991032 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615549.1 CDS IA1_19095 NC_022525.1 3991029 3992387 D enterobacterial common antigen polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.; polymerase 3991029..3992387 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615550.1 CDS IA1_19100 NC_022525.1 3992384 3993124 D Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetyl-D-mannosaminuronic acid transferase 3992384..3993124 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615551.1 CDS proY NC_022525.1 3993331 3994716 D cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 3993331..3994716 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615552.1 CDS IA1_19130 NC_022525.1 3995833 3997032 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; protoheme IX biogenesis protein complement(3995833..3997032) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615553.1 CDS IA1_19135 NC_022525.1 3997032 3998201 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; uroporphyrinogen III C-methyltransferase complement(3997032..3998201) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615554.1 CDS hemD NC_022525.1 3998223 3998963 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen-III synthase complement(3998223..3998963) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615555.1 CDS hemC NC_022525.1 3998960 3999916 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; porphobilinogen deaminase complement(3998960..3999916) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615556.1 CDS cyaA NC_022525.1 4000278 4002824 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylate cyclase 4000278..4002824 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615557.1 CDS cyaY NC_022525.1 4002902 4003222 R iron-dependent inhibitor of iron-sulfur cluster formation; iron-binding and oxidizing protein; defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; frataxin complement(4002902..4003222) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615558.1 CDS IA1_19160 NC_022525.1 4003292 4003681 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4003292..4003681) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615559.1 CDS IA1_19165 NC_022525.1 4003809 4003901 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4003809..4003901) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615560.1 CDS IA1_19170 NC_022525.1 4004377 4004577 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4004377..4004577 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615561.1 CDS dapF NC_022525.1 4004617 4005441 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminopimelate epimerase 4004617..4005441 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615562.1 CDS IA1_19180 NC_022525.1 4005438 4006145 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4005438..4006145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615563.1 CDS xerC NC_022525.1 4006142 4007044 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine recombinase XerC 4006142..4007044 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615564.1 CDS IA1_19190 NC_022525.1 4007044 4007760 D YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavin mononucleotide phosphatase 4007044..4007760 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615565.1 CDS uvrD NC_022525.1 4007896 4010058 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-dependent helicase 4007896..4010058 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615566.1 CDS IA1_19200 NC_022525.1 4010530 4011480 D responsible for the influx of magnesium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium/nickel/cobalt transporter CorA 4010530..4011480 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615567.1 CDS IA1_19205 NC_022525.1 4011528 4011908 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4011528..4011908) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615568.1 CDS IA1_19210 NC_022525.1 4012083 4012379 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4012083..4012379 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615569.1 CDS IA1_19215 NC_022525.1 4012419 4013306 R Derived by automated computational analysis using gene prediction method: Protein Homology.; chloramphenical resistance permease RarD complement(4012419..4013306) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615570.1 CDS IA1_19220 NC_022525.1 4013350 4013817 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4013350..4013817) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615571.1 CDS IA1_19225 NC_022525.1 4013982 4014851 D catalyzes the hydrolysis of phosphatidylcholine; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipase A 4013982..4014851 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615572.1 CDS IA1_19230 NC_022525.1 4014917 4016764 D functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase RecQ 4014917..4016764 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615573.1 CDS IA1_19235 NC_022525.1 4016828 4017448 D Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine transporter RhtB 4016828..4017448 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615574.1 CDS rhtB NC_022525.1 4017488 4018108 R Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine transporter RhtB complement(4017488..4018108) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615575.1 CDS IA1_19245 NC_022525.1 4018219 4019235 D lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysophospholipase L2 4018219..4019235 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615576.1 CDS IA1_19250 NC_022525.1 4019251 4020051 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 4019251..4020051 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615577.1 CDS IA1_19255 NC_022525.1 4020132 4021031 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4020132..4021031 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615578.1 CDS IA1_19260 NC_022525.1 4020919 4021872 R homocysteine-binding ; positive regulator of metA, metE and metH; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4020919..4021872) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615579.1 CDS IA1_19265 NC_022525.1 4022108 4024372 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 4022108..4024372 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615580.1 CDS IA1_19270 NC_022525.1 4024516 4024650 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4024516..4024650) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615581.1 CDS IA1_19275 NC_022525.1 4024707 4026050 D Derived by automated computational analysis using gene prediction method: Protein Homology.; anaerobic sulfatase maturase 4024707..4026050 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615582.1 CDS IA1_19280 NC_022525.1 4026130 4026942 R Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxymethylenebutenolidase complement(4026130..4026942) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615583.1 CDS IA1_19285 NC_022525.1 4027201 4027962 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; uridine phosphorylase 4027201..4027962 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615584.1 CDS IA1_19290 NC_022525.1 4028102 4029532 D YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA recombination protein RmuC 4028102..4029532 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615585.1 CDS ubiE NC_022525.1 4029628 4030383 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone and menaquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; ubiquinone/menaquinone biosynthesis methyltransferase 4029628..4030383 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615586.1 CDS IA1_19300 NC_022525.1 4030393 4030998 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4030393..4030998 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615587.1 CDS ubiB NC_022525.1 4030995 4032635 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; Derived by automated computational analysis using gene prediction method: Protein Homology.; ubiquinone biosynthesis protein UbiB 4030995..4032635 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615588.1 CDS tatA NC_022525.1 4032841 4033095 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit TatA 4032841..4033095 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615589.1 CDS IA1_19315 NC_022525.1 4033099 4033647 D mediates the export of protein precursors bearing twin-arginine signal peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; translocase 4033099..4033647 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615590.1 CDS IA1_19320 NC_022525.1 4033650 4034429 D with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; twin-arginine protein translocation system subunit TatC 4033650..4034429 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615591.1 CDS IA1_19325 NC_022525.1 4034471 4035253 D magnesium dependent; involved in quality control of mutated Tat exported substrates; not involved in the Sec-independent protein export system; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNase TatD 4034471..4035253 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615592.1 CDS rfaH NC_022525.1 4035261 4035749 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4035261..4035749) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615593.1 CDS IA1_19335 NC_022525.1 4035935 4037413 D catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-polyprenyl-4-hydroxybenzoate decarboxylase 4035935..4037413 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615594.1 CDS fre NC_022525.1 4037499 4038200 D NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; Derived by automated computational analysis using gene prediction method: Protein Homology.; FMN reductase 4037499..4038200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615595.1 CDS IA1_19345 NC_022525.1 4038454 4040277 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arylsulfate sulfotransferase 4038454..4040277 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615596.1 CDS fadA NC_022525.1 4040474 4041637 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-ketoacyl-CoA thiolase complement(4040474..4041637) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615597.1 CDS fadB NC_022525.1 4041647 4043836 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; multifunctional fatty acid oxidation complex subunit alpha complement(4041647..4043836) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615598.1 CDS IA1_19360 NC_022525.1 4044026 4045357 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; Derived by automated computational analysis using gene prediction method: Protein Homology.; proline dipeptidase 4044026..4045357 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615599.1 CDS IA1_19365 NC_022525.1 4045357 4045971 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4045357..4045971 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615600.1 CDS IA1_19370 NC_022525.1 4046010 4047461 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; potassium transporter 4046010..4047461 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615601.1 CDS hemG NC_022525.1 4047473 4048018 D catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; Derived by automated computational analysis using gene prediction method: Protein Homology.; protoporphyrinogen oxidase 4047473..4048018 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615602.1 CDS IA1_19405 NC_022525.1 4054056 4054586 R in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; molybdopterin-guanine dinucleotide biosynthesis protein B complement(4054056..4054586) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615603.1 CDS mobA NC_022525.1 4054568 4055152 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(4054568..4055152) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615604.1 CDS IA1_19415 NC_022525.1 4055222 4055491 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4055222..4055491 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615605.1 CDS IA1_19420 NC_022525.1 4055568 4056554 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine protein kinase 4055568..4056554 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615606.1 CDS IA1_19425 NC_022525.1 4056571 4057194 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol-disulfide isomerase 4056571..4057194 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615607.1 CDS IA1_19430 NC_022525.1 4057207 4058115 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyltransferase complement(4057207..4058115) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615608.1 CDS IA1_19435 NC_022525.1 4058503 4061289 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase I 4058503..4061289 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615609.1 CDS IA1_19440 NC_022525.1 4061624 4062256 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein YsxC complement(4061624..4062256) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615610.1 CDS IA1_19445 NC_022525.1 4062523 4062720 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4062523..4062720 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615611.1 CDS IA1_19450 NC_022525.1 4062839 4063354 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase activator 4062839..4063354 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615612.1 CDS IA1_19455 NC_022525.1 4063543 4064916 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; Derived by automated computational analysis using gene prediction method: Protein Homology.; coproporphyrinogen III oxidase 4063543..4064916 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615613.1 CDS glnG NC_022525.1 4065229 4066638 R response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulation protein NR(I) complement(4065229..4066638) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615614.1 CDS glnL NC_022525.1 4066647 4067696 R sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulation protein NR(II) complement(4066647..4067696) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615615.1 CDS glnA NC_022525.1 4067971 4069380 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine synthetase complement(4067971..4069380) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615616.1 CDS IA1_19475 NC_022525.1 4069756 4071579 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein TypA 4069756..4071579 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615617.1 CDS IA1_19480 NC_022525.1 4071634 4072368 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase complement(4071634..4072368) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615618.1 CDS IA1_19485 NC_022525.1 4072353 4073231 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4072353..4073231) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615619.1 CDS IA1_19490 NC_022525.1 4073228 4074469 R Derived by automated computational analysis using gene prediction method: Protein Homology.; coproporphyrinogen III oxidase complement(4073228..4074469) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615620.1 CDS IA1_19495 NC_022525.1 4074471 4075346 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4074471..4075346) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615621.1 CDS IA1_19500 NC_022525.1 4075339 4076325 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4075339..4076325) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615622.1 CDS IA1_19505 NC_022525.1 4076377 4077225 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4076377..4077225) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615623.1 CDS ompL NC_022525.1 4077382 4078074 R porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin L complement(4077382..4078074) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615624.1 CDS IA1_19515 NC_022525.1 4078142 4079560 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4078142..4079560) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615625.1 CDS IA1_19520 NC_022525.1 4079606 4080988 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4079606..4080988) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615626.1 CDS IA1_19525 NC_022525.1 4081034 4083070 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-glucosidase complement(4081034..4083070) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615627.1 CDS IA1_19530 NC_022525.1 4083194 4084069 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4083194..4084069) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615628.1 CDS IA1_19535 NC_022525.1 4084158 4085045 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aldose-1-epimerase complement(4084158..4085045) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615629.1 CDS IA1_19540 NC_022525.1 4085132 4086373 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar isomerase complement(4085132..4086373) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615630.1 CDS IA1_19545 NC_022525.1 4086389 4087267 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aldolase complement(4086389..4087267) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615631.1 CDS IA1_19550 NC_022525.1 4087290 4088186 R catalyzes the formation of gamma hydroxybutyrate from succinate semialdehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-dependent gamma-hydroxybutyrate dehydrogenase complement(4087290..4088186) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615632.1 CDS IA1_19555 NC_022525.1 4088351 4089247 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar kinase 4088351..4089247 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615633.1 CDS IA1_19560 NC_022525.1 4089281 4090084 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 4089281..4090084 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615634.1 CDS IA1_19565 NC_022525.1 4090275 4090874 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-D-glucose-1-phosphatase 4090275..4090874 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615635.1 CDS IA1_19570 NC_022525.1 4090868 4091740 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4090868..4091740 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615636.1 CDS IA1_19575 NC_022525.1 4091737 4092174 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-tyrosyl-tRNA(Tyr) deacylase 4091737..4092174 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615637.1 CDS IA1_19580 NC_022525.1 4092171 4093160 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4092171..4093160 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615638.1 CDS IA1_19585 NC_022525.1 4093175 4093603 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4093175..4093603) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615639.1 CDS IA1_19590 NC_022525.1 4093618 4093929 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoplasmic protein complement(4093618..4093929) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615640.1 CDS IA1_19595 NC_022525.1 4094015 4094944 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipase complement(4094015..4094944) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615641.1 CDS IA1_19600 NC_022525.1 4095162 4095473 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4095162..4095473 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615642.1 CDS IA1_19605 NC_022525.1 4095474 4095764 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Cro/Cl family transcriptional regulator 4095474..4095764 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615643.1 CDS IA1_19610 NC_022525.1 4095811 4096740 R required for the formation of active formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase accessory protein FdhE complement(4095811..4096740) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615644.1 CDS IA1_19615 NC_022525.1 4096737 4097372 R cytochrome b556(FDO) component; heme containing; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit gamma complement(4096737..4097372) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615645.1 CDS IA1_19620 NC_022525.1 4097369 4098271 R beta subunit; involved in the use of formate as an electron donor during aerobic respiration; acts to transfer electrons from the major(alpha subunit) to the cytochrome b556(gamma subunit); Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit beta complement(4097369..4098271) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615646.1 CDS IA1_19625 NC_022525.1 4098284 4100698 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; formate dehydrogenase subunit alpha complement(4098284..4100698) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615647.1 CDS IA1_19630 NC_022525.1 4100747 4101334 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sulfate ABC transporter substrate-binding protein complement(4100747..4101334) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615648.1 CDS IA1_19635 NC_022525.1 4101529 4102365 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase accessory protein 4101529..4102365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615649.1 CDS IA1_19640 NC_022525.1 4102633 4103664 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(4102633..4103664) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615650.1 CDS IA1_19645 NC_022525.1 4103888 4104946 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4103888..4104946 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615651.1 CDS IA1_19650 NC_022525.1 4105301 4105624 R Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid transport complement(4105301..4105624) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615652.1 CDS IA1_19655 NC_022525.1 4105624 4106283 R Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease complement(4105624..4106283) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615653.1 CDS IA1_19660 NC_022525.1 4106384 4106932 D phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4106384..4106932 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615654.1 CDS IA1_19665 NC_022525.1 4107021 4107335 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-rhamnose mutarotase complement(4107021..4107335) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615655.1 CDS IA1_19670 NC_022525.1 4107332 4108480 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase complement(4107332..4108480) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615656.1 CDS IA1_19675 NC_022525.1 4108607 4109434 R Derived by automated computational analysis using gene prediction method: Protein Homology.; rhamnulose-1-phosphate aldolase complement(4108607..4109434) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615657.1 CDS IA1_19680 NC_022525.1 4109577 4110836 R catalyzes the formation of L-rhamnulose from L-rhamnose; Derived by automated computational analysis using gene prediction method: Protein Homology.; rhamnose isomerase complement(4109577..4110836) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615658.1 CDS rhaB NC_022525.1 4110833 4112302 R catalyzes the ATP-dependent phosphorylation of rhamnulose; Derived by automated computational analysis using gene prediction method: Protein Homology.; rhamnulokinase complement(4110833..4112302) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615659.1 CDS IA1_19690 NC_022525.1 4112590 4113426 D Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 4112590..4113426 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615660.1 CDS IA1_19695 NC_022525.1 4113579 4114427 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4113579..4114427 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615661.1 CDS IA1_19700 NC_022525.1 4114424 4115458 R transports L-rhamnose and L-lyxose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar:proton symporter complement(4114424..4115458) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615662.1 CDS IA1_19705 NC_022525.1 4115928 4116053 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4115928..4116053 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615663.1 CDS IA1_19710 NC_022525.1 4116090 4116761 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4116090..4116761 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615664.1 CDS IA1_19715 NC_022525.1 4116919 4118226 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4116919..4118226) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615665.1 CDS IA1_19720 NC_022525.1 4118219 4118734 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-independent transporter subunit complement(4118219..4118734) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615666.1 CDS IA1_19725 NC_022525.1 4118753 4119736 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4118753..4119736) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615667.1 CDS IA1_19730 NC_022525.1 4120065 4120685 D SodA; manganese binding; only present under aerobic conditions; destroys free radicals; Derived by automated computational analysis using gene prediction method: Protein Homology.; superoxide dismutase 4120065..4120685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615668.1 CDS IA1_19735 NC_022525.1 4120755 4121444 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-N-hydroxylaminopurine resistance protein 4120755..4121444 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615669.1 CDS IA1_19740 NC_022525.1 4121456 4121851 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4121456..4121851 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615670.1 CDS cpxA NC_022525.1 4121902 4123275 R part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine kinase complement(4121902..4123275) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615671.1 CDS IA1_19750 NC_022525.1 4123272 4123970 R response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4123272..4123970) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615672.1 CDS cpxP NC_022525.1 4124121 4124621 D repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; repressor CpxP 4124121..4124621 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615673.1 CDS fieF NC_022525.1 4124769 4125671 D member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 4124769..4125671 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615674.1 CDS IA1_19765 NC_022525.1 4125856 4126818 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphofructokinase 4125856..4126818 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615675.1 CDS IA1_19770 NC_022525.1 4127022 4128011 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate transporter subunit 4127022..4128011 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615676.1 CDS IA1_19775 NC_022525.1 4128112 4128867 D Derived by automated computational analysis using gene prediction method: Protein Homology.; CDP-diacylglycerol pyrophosphatase 4128112..4128867 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615677.1 CDS IA1_19780 NC_022525.1 4129131 4130465 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:galactoside symporter 4129131..4130465 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615678.1 CDS IA1_19785 NC_022525.1 4130476 4131435 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoimidazole riboside kinase 4130476..4131435 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615679.1 CDS IA1_19790 NC_022525.1 4131445 4132485 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-ribosylglycohydrolase 4131445..4132485 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615680.1 CDS IA1_19795 NC_022525.1 4132539 4133270 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 4132539..4133270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615681.1 CDS IA1_19800 NC_022525.1 4133368 4133538 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4133368..4133538 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615682.1 CDS IA1_19805 NC_022525.1 4133554 4133685 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4133554..4133685 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615683.1 CDS IA1_19810 NC_022525.1 4133775 4134125 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4133775..4134125) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615684.1 CDS IA1_19815 NC_022525.1 4134139 4135731 R Derived by automated computational analysis using gene prediction method: Protein Homology.; autoinducer kinase complement(4134139..4135731) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615685.1 CDS IA1_19820 NC_022525.1 4135818 4136777 R regulates the transcription of lsr genes; involved in autoinducer 2 uptake, biofilm formation and stress responses; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4135818..4136777) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615686.1 CDS IA1_19825 NC_022525.1 4137033 4138568 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4137033..4138568 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615687.1 CDS IA1_19830 NC_022525.1 4138562 4139605 D with LsrADB is involved in the transport of autoindiuce 2; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter permease 4138562..4139605 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615688.1 CDS IA1_19835 NC_022525.1 4140631 4141653 D Derived by automated computational analysis using gene prediction method: Protein Homology.; autoinducer 4140631..4141653 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615689.1 CDS IA1_19840 NC_022525.1 4141682 4142557 D involved in autoinducer 2 transport and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldolase 4141682..4142557 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615690.1 CDS IA1_19845 NC_022525.1 4142637 4142930 D Derived by automated computational analysis using gene prediction method: Protein Homology.; autoinducer-2 (AI-2) modifying protein LsrG 4142637..4142930 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615691.1 CDS IA1_19850 NC_022525.1 4142940 4143704 D Derived by automated computational analysis using gene prediction method: Protein Homology.; epimerase 4142940..4143704 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615692.1 CDS IA1_19855 NC_022525.1 4143796 4144563 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; triosephosphate isomerase complement(4143796..4144563) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615693.1 CDS IA1_19860 NC_022525.1 4144676 4145272 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4144676..4145272) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615694.1 CDS IA1_19865 NC_022525.1 4145373 4145801 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4145373..4145801 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615695.1 CDS IA1_19870 NC_022525.1 4145908 4146654 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin-NADP reductase complement(4145908..4146654) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615696.1 CDS IA1_19875 NC_022525.1 4146751 4147761 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose 1,6-bisphosphatase complement(4146751..4147761) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615697.1 CDS glpK NC_022525.1 4147873 4149381 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol kinase complement(4147873..4149381) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615698.1 CDS IA1_19885 NC_022525.1 4149402 4150247 R involved in the transport of glycerol into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol uptake facilitator GlpF complement(4149402..4150247) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615699.1 CDS IA1_19890 NC_022525.1 4150646 4150885 D interacts with FisZ and is necessary for Z-ring formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; septal ring assembly protein ZapB 4150646..4150885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615700.1 CDS IA1_19895 NC_022525.1 4151107 4151592 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease activity regulator protein RraA complement(4151107..4151592) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615701.1 CDS IA1_19900 NC_022525.1 4151685 4152614 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1,4-dihydroxy-2-naphthoate prenyltransferase complement(4151685..4152614) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615702.1 CDS hslU NC_022525.1 4152681 4154012 R heat shock protein involved in degradation of misfolded proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease complement(4152681..4154012) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615703.1 CDS IA1_19910 NC_022525.1 4154022 4154552 R heat shock protein involved in degradation of misfolded proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease complement(4154022..4154552) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615704.1 CDS IA1_19915 NC_022525.1 4154644 4155642 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsN complement(4154644..4155642) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615705.1 CDS IA1_19920 NC_022525.1 4155736 4156761 R negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4155736..4156761) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615706.1 CDS IA1_19925 NC_022525.1 4156916 4159114 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; primosome assembly protein PriA complement(4156916..4159114) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615707.1 CDS rpmE NC_022525.1 4159318 4159530 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L31 4159318..4159530 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615708.1 CDS IA1_19935 NC_022525.1 4159576 4160238 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(4159576..4160238) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615709.1 CDS IA1_19940 NC_022525.1 4160439 4162229 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arylsulfate sulfotransferase complement(4160439..4162229) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615710.1 CDS IA1_19945 NC_022525.1 4162686 4163003 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4162686..4163003) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615711.1 CDS IA1_19950 NC_022525.1 4163268 4164428 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.; cystathionine gamma-synthase 4163268..4164428 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615712.1 CDS metL NC_022525.1 4164431 4166863 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional aspartate kinase II/homoserine dehydrogenase II 4164431..4166863 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615713.1 CDS IA1_19960 NC_022525.1 4166979 4167836 R participates in the regulation of osmotic pressure changes within the cel; Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive channel MscS complement(4166979..4167836) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615714.1 CDS IA1_19965 NC_022525.1 4167839 4168837 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(4167839..4168837) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615715.1 CDS IA1_19970 NC_022525.1 4169072 4170196 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4169072..4170196) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615716.1 CDS IA1_19975 NC_022525.1 4170332 4171888 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-nucleotidase 4170332..4171888 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615717.1 CDS metF NC_022525.1 4172083 4172973 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5,10-methylenetetrahydrofolate reductase 4172083..4172973 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615718.1 CDS IA1_19985 NC_022525.1 4173138 4175318 D has catalase and peroxidase activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; catalase/hydroperoxidase HPI(I) 4173138..4175318 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615719.1 CDS IA1_19990 NC_022525.1 4175376 4175999 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:quinone oxidoreductase complement(4175376..4175999) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615720.1 CDS gldA NC_022525.1 4176258 4177361 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol dehydrogenase complement(4176258..4177361) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615721.1 CDS IA1_20000 NC_022525.1 4177373 4178035 R similar to transaldolase from Escherichia coli; many organisms have multiple copies; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase complement(4177373..4178035) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615722.1 CDS IA1_20005 NC_022525.1 4178046 4180547 R Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate-protein phosphotransferase complement(4178046..4180547) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615723.1 CDS IA1_20010 NC_022525.1 4180856 4181935 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIBC 4180856..4181935 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615724.1 CDS IA1_20015 NC_022525.1 4181950 4182270 D FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIB 4181950..4182270 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615725.1 CDS pflD NC_022525.1 4182369 4184666 D involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate acetyltransferase 4182369..4184666 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615726.1 CDS IA1_20025 NC_022525.1 4184632 4185510 D Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate formate lyase II activase 4184632..4185510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615727.1 CDS IA1_20030 NC_022525.1 4185512 4185865 D FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIB 4185512..4185865 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615728.1 CDS IA1_20035 NC_022525.1 4185852 4186703 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(4185852..4186703) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615729.1 CDS IA1_20040 NC_022525.1 4186864 4188597 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4186864..4188597) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615730.1 CDS IA1_20045 NC_022525.1 4188808 4191459 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate carboxylase complement(4188808..4191459) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615731.1 CDS IA1_20050 NC_022525.1 4191828 4192979 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetylornithine deacetylase complement(4191828..4192979) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615732.1 CDS IA1_20055 NC_022525.1 4193068 4194072 D Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyl-gamma-glutamyl-phosphate reductase 4193068..4194072 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615733.1 CDS IA1_20060 NC_022525.1 4194083 4194856 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acetylglutamate kinase 4194083..4194856 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615734.1 CDS IA1_20065 NC_022525.1 4194974 4196350 D catalyzes the formation of arginine from (N-L-arginino)succinate; Derived by automated computational analysis using gene prediction method: Protein Homology.; argininosuccinate lyase 4194974..4196350 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615735.1 CDS IA1_20070 NC_022525.1 4196636 4197553 D Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4196636..4197553 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615736.1 CDS IA1_20075 NC_022525.1 4197536 4198936 R catalyzes the conversion of NADPH to NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; soluble pyridine nucleotide transhydrogenase complement(4197536..4198936) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615737.1 CDS IA1_20080 NC_022525.1 4199135 4199770 D negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4199135..4199770 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615738.1 CDS IA1_20085 NC_022525.1 4199786 4200145 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4199786..4200145 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615739.1 CDS IA1_20090 NC_022525.1 4200192 4201292 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (uracil-5-)-methyltransferase complement(4200192..4201292) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615740.1 CDS btuB NC_022525.1 4201666 4203510 D involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; vitamin B12/cobalamin outer membrane transporter 4201666..4203510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615741.1 CDS IA1_20100 NC_022525.1 4203524 4204306 D converts L-glutamate to D-glutamate, a component of peptidoglycan; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glutamate racemase 4203524..4204306 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615742.1 CDS IA1_20130 NC_022525.1 4209971 4210999 D Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylenolpyruvoylglucosamine reductase 4209971..4210999 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615743.1 CDS IA1_20135 NC_022525.1 4210996 4211958 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor 4210996..4211958 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615744.1 CDS IA1_20140 NC_022525.1 4211993 4212943 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pantothenate kinase complement(4211993..4212943) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615745.1 CDS IA1_20165 NC_022525.1 4214615 4215085 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4214615..4215085 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615746.1 CDS secE NC_022525.1 4215315 4215698 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecE 4215315..4215698 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615747.1 CDS nusG NC_022525.1 4215700 4216245 D Modulates Rho-dependent transcription termination; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription antitermination protein NusG 4215700..4216245 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615748.1 CDS IA1_20180 NC_022525.1 4216403 4216831 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L11 4216403..4216831 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615749.1 CDS IA1_20185 NC_022525.1 4216835 4217539 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L1 4216835..4217539 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615750.1 CDS rplJ NC_022525.1 4217959 4218456 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L10 4217959..4218456 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615751.1 CDS IA1_20195 NC_022525.1 4218523 4218888 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L7/L12 4218523..4218888 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615752.1 CDS rpoB NC_022525.1 4219206 4223234 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit beta 4219206..4223234 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615753.1 CDS IA1_20205 NC_022525.1 4223311 4227534 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit beta' 4223311..4227534 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615754.1 CDS IA1_20210 NC_022525.1 4227621 4227902 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4227621..4227902 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615755.1 CDS IA1_20215 NC_022525.1 4228202 4228339 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4228202..4228339) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615756.1 CDS IA1_20220 NC_022525.1 4228702 4228917 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4228702..4228917 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615757.1 CDS thiH NC_022525.1 4228999 4230132 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine biosynthesis protein ThiH complement(4228999..4230132) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615758.1 CDS IA1_20230 NC_022525.1 4230129 4230899 R Derived by automated computational analysis using gene prediction method: Protein Homology.; thiazole synthase complement(4230129..4230899) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615759.1 CDS IA1_20235 NC_022525.1 4230901 4231101 R with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur carrier protein ThiS complement(4230901..4231101) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615760.1 CDS IA1_20240 NC_022525.1 4231082 4231840 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin biosynthesis protein MoeB complement(4231082..4231840) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615761.1 CDS IA1_20245 NC_022525.1 4231833 4232468 R catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine-phosphate pyrophosphorylase complement(4231833..4232468) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615762.1 CDS IA1_20250 NC_022525.1 4232468 4234363 R catalyzes the formation of 4-amino-2-methyl-5-phosphomethylpyrimidine from 5-amino-1-(5-phospho-D-ribosyl)imidazole and S-adenosyl-L-methionine in thiamine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphomethylpyrimidine synthase ThiC complement(4232468..4234363) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615763.1 CDS IA1_20255 NC_022525.1 4234727 4235215 R binds specifically to the major sigma factor sigma 70; active in stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-RNA polymerase sigma 70 factor complement(4234727..4235215) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615764.1 CDS nudC NC_022525.1 4235308 4236081 D can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH pyrophosphatase 4235308..4236081 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615765.1 CDS hemE NC_022525.1 4236122 4237186 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen decarboxylase 4236122..4237186 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615766.1 CDS IA1_20270 NC_022525.1 4237196 4237867 D Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease VIII 4237196..4237867 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615767.1 CDS IA1_20275 NC_022525.1 4237909 4238499 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4237909..4238499 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615768.1 CDS IA1_20280 NC_022525.1 4238686 4238958 D histone-like DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4238686..4238958 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615769.1 CDS IA1_20285 NC_022525.1 4238970 4239662 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4238970..4239662 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615770.1 CDS zraP NC_022525.1 4239704 4240159 R Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc resistance protein complement(4239704..4240159) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615771.1 CDS IA1_20295 NC_022525.1 4240347 4241810 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein ZraS 4240347..4241810 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615772.1 CDS IA1_20300 NC_022525.1 4241816 4243141 D DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetoacetate metabolism regulatory protein AtoC 4241816..4243141 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615773.1 CDS IA1_20305 NC_022525.1 4243138 4244427 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylamine--glycine ligase complement(4243138..4244427) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615774.1 CDS purH NC_022525.1 4244443 4246032 R involved in de novo purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; purine biosynthesis protein purH complement(4244443..4246032) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615775.1 CDS IA1_20335 NC_022525.1 4252231 4252668 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase complement(4252231..4252668) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615776.1 CDS IA1_20340 NC_022525.1 4252825 4253754 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; homoserine O-succinyltransferase 4252825..4253754 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615777.1 CDS IA1_20345 NC_022525.1 4254023 4255624 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate synthase 4254023..4255624 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615778.1 CDS IA1_20350 NC_022525.1 4255656 4256960 D Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase 4255656..4256960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615779.1 CDS aceK NC_022525.1 4257062 4258813 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional isocitrate dehydrogenase kinase/phosphatase 4257062..4258813 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615780.1 CDS IA1_20360 NC_022525.1 4258777 4259211 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4258777..4259211) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615781.1 CDS IA1_20365 NC_022525.1 4259195 4260019 R regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator complement(4259195..4260019) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615782.1 CDS metH NC_022525.1 4260324 4264007 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; B12-dependent methionine synthase 4260324..4264007 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615783.1 CDS IA1_20375 NC_022525.1 4264274 4265905 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4264274..4265905 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615784.1 CDS IA1_20380 NC_022525.1 4265981 4266670 R peptidase E; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; (alpha)-aspartyl dipeptidase complement(4265981..4266670) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615785.1 CDS IA1_20385 NC_022525.1 4266878 4267417 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4266878..4267417 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615786.1 CDS IA1_20390 NC_022525.1 4267464 4268333 D catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridine synthase F 4267464..4268333 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615787.1 CDS IA1_20395 NC_022525.1 4268330 4268602 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4268330..4268602) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615788.1 CDS IA1_20400 NC_022525.1 4268700 4269641 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sodium transporter complement(4268700..4269641) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615789.1 CDS IA1_20405 NC_022525.1 4269903 4270631 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4269903..4270631) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615790.1 CDS IA1_20410 NC_022525.1 4270945 4271178 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4270945..4271178) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615791.1 CDS IA1_20415 NC_022525.1 4271370 4271825 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4271370..4271825) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615792.1 CDS IA1_20420 NC_022525.1 4271822 4272427 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4271822..4272427) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615793.1 CDS IA1_20425 NC_022525.1 4272432 4274201 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein complement(4272432..4274201) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615794.1 CDS IA1_20430 NC_022525.1 4274204 4274836 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail fiber protein complement(4274204..4274836) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615795.1 CDS IA1_20435 NC_022525.1 4274829 4275944 R Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate protein complement(4274829..4275944) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615796.1 CDS IA1_20440 NC_022525.1 4275935 4276294 R Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate protein complement(4275935..4276294) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615797.1 CDS IA1_20445 NC_022525.1 4276355 4276477 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4276355..4276477 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615798.1 CDS IA1_20450 NC_022525.1 4276458 4278005 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(4276458..4278005) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615799.1 CDS IA1_20455 NC_022525.1 4278005 4278934 R Derived by automated computational analysis using gene prediction method: Protein Homology.; bactoprenol glucosyl transferase complement(4278005..4278934) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615800.1 CDS IA1_20460 NC_022525.1 4278931 4279293 R Derived by automated computational analysis using gene prediction method: Protein Homology.; translocase complement(4278931..4279293) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615801.1 CDS IA1_20465 NC_022525.1 4279621 4280343 R Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate protein complement(4279621..4280343) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615802.1 CDS IA1_20470 NC_022525.1 4280353 4281396 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4280353..4281396) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615803.1 CDS IA1_20475 NC_022525.1 4281384 4281593 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4281384..4281593) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615804.1 CDS IA1_20480 NC_022525.1 4281593 4282546 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4281593..4282546) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615805.1 CDS IA1_20485 NC_022525.1 4282546 4284900 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(4282546..4284900) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615806.1 CDS IA1_20490 NC_022525.1 4284997 4285125 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4284997..4285125) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615807.1 CDS IA1_20495 NC_022525.1 4285085 4285402 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4285085..4285402) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615808.1 CDS IA1_20500 NC_022525.1 4285454 4285978 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(4285454..4285978) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615809.1 CDS IA1_20505 NC_022525.1 4285978 4287405 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(4285978..4287405) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615810.1 CDS IA1_20510 NC_022525.1 4287395 4287592 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4287395..4287592) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615811.1 CDS IA1_20515 NC_022525.1 4287589 4288044 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4287589..4288044) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615812.1 CDS IA1_20520 NC_022525.1 4288205 4288519 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4288205..4288519) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615813.1 CDS IA1_20525 NC_022525.1 4288532 4289137 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic murein transglycosylase complement(4288532..4289137) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615814.1 CDS IA1_20530 NC_022525.1 4289140 4289427 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4289140..4289427) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615815.1 CDS IA1_20535 NC_022525.1 4290004 4290351 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 4290004..4290351 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615816.1 CDS IA1_20540 NC_022525.1 4290482 4291831 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate kinase complement(4290482..4291831) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615817.1 CDS pgi NC_022525.1 4292176 4293825 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-6-phosphate isomerase 4292176..4293825 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615818.1 CDS IA1_20550 NC_022525.1 4294269 4294511 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4294269..4294511 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615819.1 CDS IA1_20555 NC_022525.1 4294575 4295213 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4294575..4295213 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615820.1 CDS IA1_20560 NC_022525.1 4295210 4295947 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4295210..4295947 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615821.1 CDS IA1_20565 NC_022525.1 4295947 4298043 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4295947..4298043 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615822.1 CDS IA1_20570 NC_022525.1 4298186 4298596 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate-starvation-inducible protein PsiE 4298186..4298596 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615823.1 CDS malG NC_022525.1 4298762 4299652 R with MalKFE is involved in the transport of maltose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose transporter permease complement(4298762..4299652) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615824.1 CDS malF NC_022525.1 4299667 4301211 R with MalKGE is involved in maltose transport into the cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; maltose transporter membrane protein complement(4299667..4301211) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615825.1 CDS malE NC_022525.1 4301343 4302533 R functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter substrate-binding protein complement(4301343..4302533) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615826.1 CDS IA1_20590 NC_022525.1 4302895 4304004 D with malEFG is involved in import of maltose/maltodextrin; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter ATP-binding protein 4302895..4304004 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615827.1 CDS lamB NC_022525.1 4304093 4305451 D porin involved in the transport of maltose and maltodextrins; Derived by automated computational analysis using gene prediction method: Protein Homology.; maltoporin 4304093..4305451 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615828.1 CDS IA1_20600 NC_022525.1 4305615 4306532 D Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose operon protein 4305615..4306532 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615829.1 CDS ubiC NC_022525.1 4306714 4307211 D catalyzes the formation of 4-hydroxybenzoate from chorismate; Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate pyruvate lyase 4306714..4307211 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615830.1 CDS ubiA NC_022525.1 4307225 4308097 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxybenzoate polyprenyltransferase 4307225..4308097 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615831.1 CDS IA1_20615 NC_022525.1 4308196 4310616 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate acyltransferase complement(4308196..4310616) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615832.1 CDS IA1_20620 NC_022525.1 4310787 4311155 D catalyzes the phosphorylation of diacylglycerol to form diacylglycerol phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; diacylglycerol kinase 4310787..4311155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615833.1 CDS IA1_20625 NC_022525.1 4311264 4311872 D Represses a number of genes involved in the response to DNA damage; Derived by automated computational analysis using gene prediction method: Protein Homology.; LexA repressor 4311264..4311872 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615834.1 CDS IA1_20630 NC_022525.1 4312051 4313376 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-damage-inducible protein 4312051..4313376 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615835.1 CDS IA1_20635 NC_022525.1 4313358 4313486 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4313358..4313486 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615836.1 CDS IA1_20640 NC_022525.1 4313505 4313717 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4313505..4313717 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615837.1 CDS IA1_20645 NC_022525.1 4313817 4314332 R Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4313817..4314332) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615838.1 CDS IA1_20650 NC_022525.1 4314579 4315889 D Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugative transfer protein 4314579..4315889 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615839.1 CDS IA1_20655 NC_022525.1 4315977 4316975 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA-dihydrouridine synthase A 4315977..4316975 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615840.1 CDS pspG NC_022525.1 4317143 4317385 D coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein 4317143..4317385 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615841.1 CDS IA1_20665 NC_022525.1 4317559 4318542 R Derived by automated computational analysis using gene prediction method: Protein Homology.; quinone oxidoreductase complement(4317559..4318542) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615842.1 CDS IA1_20670 NC_022525.1 4318607 4320022 D unwinds double stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA helicase 4318607..4320022 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615843.1 CDS alr NC_022525.1 4320054 4321133 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine racemase 4320054..4321133 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615844.1 CDS IA1_20680 NC_022525.1 4321319 4322512 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid aminotransferase 4321319..4322512 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615845.1 CDS aphA NC_022525.1 4322734 4323411 D Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotransferase 4322734..4323411 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615846.1 CDS IA1_20690 NC_022525.1 4323540 4323956 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamin phosphate synthase 4323540..4323956 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615847.1 CDS IA1_20695 NC_022525.1 4323959 4324315 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4323959..4324315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615848.1 CDS IA1_20700 NC_022525.1 4324316 4324654 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4324316..4324654) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615849.1 CDS IA1_20705 NC_022525.1 4324641 4325096 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(4324641..4325096) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615850.1 CDS IA1_20710 NC_022525.1 4325228 4328053 R Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit A complement(4325228..4328053) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615851.1 CDS IA1_20715 NC_022525.1 4328301 4328831 D binds to single stranded DNA and PriA helcase facilitate replication restart; Derived by automated computational analysis using gene prediction method: Protein Homology.; single-stranded DNA-binding protein 4328301..4328831 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615852.1 CDS IA1_20720 NC_022525.1 4329872 4330504 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4329872..4330504 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615853.1 CDS IA1_20725 NC_022525.1 4330501 4331889 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4330501..4331889 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615854.1 CDS IA1_20730 NC_022525.1 4332272 4333198 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type-I secretion protein 4332272..4333198 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615855.1 CDS IA1_20735 NC_022525.1 4333195 4334472 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transporter 4333195..4334472 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615856.1 CDS IA1_20740 NC_022525.1 4334489 4351168 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4334489..4351168 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615857.1 CDS IA1_20745 NC_022525.1 4351208 4353274 D Derived by automated computational analysis using gene prediction method: Protein Homology.; antibiotic ABC transporter ATP-binding protein 4351208..4353274 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615858.1 CDS IA1_20750 NC_022525.1 4353552 4353833 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(4353552..4353833) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615859.1 CDS IA1_20755 NC_022525.1 4354396 4355997 D Derived by automated computational analysis using gene prediction method: Protein Homology.; signal peptide protein 4354396..4355997 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615860.1 CDS IA1_20760 NC_022525.1 4355985 4356308 R regulates genes involved in response to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4355985..4356308) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615861.1 CDS IA1_20765 NC_022525.1 4356395 4356853 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4356395..4356853 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615862.1 CDS IA1_20770 NC_022525.1 4357146 4357814 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase 4357146..4357814 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615863.1 CDS IA1_20775 NC_022525.1 4358161 4359510 D Derived by automated computational analysis using gene prediction method: Protein Homology.; permase 4358161..4359510 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615864.1 CDS IA1_20780 NC_022525.1 4359503 4359661 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4359503..4359661) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615865.1 CDS IA1_20785 NC_022525.1 4359660 4361306 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 4359660..4361306 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615866.1 CDS IA1_20790 NC_022525.1 4361401 4362288 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4361401..4362288) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615867.1 CDS IA1_20795 NC_022525.1 4362392 4362802 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LrgA 4362392..4362802 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615868.1 CDS IA1_20800 NC_022525.1 4362795 4363484 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LrgB 4362795..4363484 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615869.1 CDS actP NC_022525.1 4363523 4365172 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; actetate permease complement(4363523..4365172) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615870.1 CDS IA1_20810 NC_022525.1 4365169 4365483 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(4365169..4365483) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615871.1 CDS IA1_20815 NC_022525.1 4365723 4367681 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA synthetase complement(4365723..4367681) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615872.1 CDS nrfA NC_022525.1 4368113 4369549 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C nitrite reductase subunit c552 4368113..4369549 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615873.1 CDS IA1_20825 NC_022525.1 4369661 4370227 D part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C nitrite reductase pentaheme subunit 4369661..4370227 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615874.1 CDS IA1_20830 NC_022525.1 4370224 4370895 D 4Fe4S subunit; may be involved in the transfer of electrons from quinones to the c-type cytochromes; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate-dependent nitrite reductase subunit NrfC 4370224..4370895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615875.1 CDS IA1_20835 NC_022525.1 4370892 4371848 D membrane protein, may be involved in the transfer of electrons from quinones to c-type cytochromes; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate-dependent nitrite reductase subunit NrfD 4370892..4371848 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615876.1 CDS IA1_20840 NC_022525.1 4371917 4373584 D with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; heme lyase subunit NrfE 4371917..4373584 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615877.1 CDS IA1_20845 NC_022525.1 4373577 4374086 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; nitrite reductase subunit F 4373577..4374086 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615878.1 CDS IA1_20850 NC_022525.1 4374083 4374703 D Derived by automated computational analysis using gene prediction method: Protein Homology.; formate-dependent nitrite reductase complex subunit NrfG 4374083..4374703 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615879.1 CDS IA1_20855 NC_022525.1 4375048 4376358 D Derived by automated computational analysis using gene prediction method: Protein Homology.; proton glutamate symport protein 4375048..4376358 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615880.1 CDS IA1_20860 NC_022525.1 4376516 4377205 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4376516..4377205) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615881.1 CDS IA1_20865 NC_022525.1 4377382 4379061 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4377382..4379061) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615882.1 CDS IA1_20870 NC_022525.1 4379110 4379529 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; spermidine/putrescine ABC transporter substrate-binding protein complement(4379110..4379529) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615883.1 CDS IA1_20875 NC_022525.1 4379884 4380792 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aspartyl/asparaginyl beta-hydroxylase AspH complement(4379884..4380792) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615884.1 CDS IA1_20880 NC_022525.1 4381050 4381484 R PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoalkylphosphonic acid N-acetyltransferase complement(4381050..4381484) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615885.1 CDS IA1_20885 NC_022525.1 4381636 4382079 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4381636..4382079) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615886.1 CDS IA1_20890 NC_022525.1 4382199 4382534 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4382199..4382534) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615887.1 CDS IA1_20895 NC_022525.1 4383043 4384503 D Derived by automated computational analysis using gene prediction method: Protein Homology.; proline/glycine betaine transporter 4383043..4384503 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615888.1 CDS IA1_20900 NC_022525.1 4384573 4384662 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4384573..4384662 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615889.1 CDS IA1_20905 NC_022525.1 4384670 4385749 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sensor protein BasS/PmrB complement(4384670..4385749) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615890.1 CDS IA1_20910 NC_022525.1 4385750 4386418 R response regulator in two-component regulatory system with BasS; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4385750..4386418) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615891.1 CDS IA1_20915 NC_022525.1 4386415 4388058 R Derived by automated computational analysis using gene prediction method: Protein Homology.; metal dependent hydrolase complement(4386415..4388058) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615892.1 CDS IA1_20920 NC_022525.1 4388192 4389529 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine:agmatine antiporter complement(4388192..4389529) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615893.1 CDS IA1_20925 NC_022525.1 4389669 4390328 R regulates genes involved in arginine decarboxylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator complement(4389669..4390328) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615894.1 CDS IA1_20930 NC_022525.1 4390357 4390527 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4390357..4390527) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615895.1 CDS IA1_20935 NC_022525.1 4390727 4392997 R biodegradative; catalyzes the formation of agmatine from arginine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arginine decarboxylase complement(4390727..4392997) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615896.1 CDS IA1_20940 NC_022525.1 4393227 4394159 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator complement(4393227..4394159) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615897.1 CDS IA1_20945 NC_022525.1 4394431 4395783 D catalyses the hydrolysis of terminal non-reducing alpha-D-galactose residues in alpha-D-galactosides; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; alpha-galactosidase 4394431..4395783 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615898.1 CDS IA1_20950 NC_022525.1 4395867 4397297 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar:sodium symporter 4395867..4397297 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615899.1 CDS IA1_20955 NC_022525.1 4397395 4399041 R catalyzes the formation of malate from fumerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase complement(4397395..4399041) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615900.1 CDS IA1_20960 NC_022525.1 4399137 4400477 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter complement(4399137..4400477) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615901.1 CDS IA1_20965 NC_022525.1 4401207 4401926 R response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4401207..4401926) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615902.1 CDS IA1_20970 NC_022525.1 4401923 4403554 R C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sensory histidine kinase complement(4401923..4403554) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615903.1 CDS IA1_20975 NC_022525.1 4403929 4406358 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit A 4403929..4406358 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615904.1 CDS IA1_20980 NC_022525.1 4406372 4406998 D oxidoreductase, Fe-S subunit; terminal electron transfer protein for the reduction of DMSO; Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit B 4406372..4406998 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615905.1 CDS IA1_20985 NC_022525.1 4406991 4407764 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit C 4406991..4407764 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615906.1 CDS IA1_20990 NC_022525.1 4407839 4408432 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dehydrogenase 4407839..4408432 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615907.1 CDS IA1_20995 NC_022525.1 4408516 4409916 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4408516..4409916) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615908.1 CDS IA1_21000 NC_022525.1 4410220 4411125 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4410220..4411125 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615909.1 CDS IA1_21005 NC_022525.1 4411586 4411912 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ferrichrome ABC transporter ATP-binding protein 4411586..4411912 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615910.1 CDS IA1_21010 NC_022525.1 4411905 4412177 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GerE family regulatory protein complement(4411905..4412177) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615911.1 CDS IA1_21015 NC_022525.1 4412189 4413064 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(4412189..4413064) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615912.1 CDS IA1_21020 NC_022525.1 4413203 4413328 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4413203..4413328 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615913.1 CDS IA1_21035 NC_022525.1 4414887 4415888 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4414887..4415888 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615914.1 CDS IA1_21040 NC_022525.1 4415977 4416156 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase TnpA complement(4415977..4416156) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615915.1 CDS IA1_21045 NC_022525.1 4416137 4416427 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(4416137..4416427) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615916.1 CDS IA1_21050 NC_022525.1 4417165 4417917 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acid phosphatase complement(4417165..4417917) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615917.1 CDS IA1_21055 NC_022525.1 4418316 4418459 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4418316..4418459 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615918.1 CDS IA1_21065 NC_022525.1 4418819 4419394 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4418819..4419394) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615919.1 CDS dipZ NC_022525.1 4419431 4421134 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol:disulfide interchange protein complement(4419431..4421134) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615920.1 CDS IA1_21075 NC_022525.1 4421110 4421457 R copper binding protein required for copper tolerance; involved in resistance toward heavy metals; Derived by automated computational analysis using gene prediction method: Protein Homology.; divalent ion tolerance protein CutA complement(4421110..4421457) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615921.1 CDS IA1_21080 NC_022525.1 4421578 4422879 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter complement(4421578..4422879) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615922.1 CDS aspA NC_022525.1 4422994 4424430 R catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate ammonia-lyase complement(4422994..4424430) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615923.1 CDS fxsA NC_022525.1 4424771 4425247 D F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; exclusion suppressor FxsA 4424771..4425247 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615924.1 CDS IA1_21095 NC_022525.1 4425306 4426568 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(4425306..4426568) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615925.1 CDS groES NC_022525.1 4426823 4427116 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; co-chaperonin GroES 4426823..4427116 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615926.1 CDS groEL NC_022525.1 4427160 4428806 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone GroEL 4427160..4428806 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615927.1 CDS IA1_21110 NC_022525.1 4429032 4429403 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4429032..4429403 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615928.1 CDS IA1_21115 NC_022525.1 4429451 4430308 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4429451..4430308) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615929.1 CDS IA1_21120 NC_022525.1 4430590 4431618 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine 2,3-aminomutase complement(4430590..4431618) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615930.1 CDS IA1_21125 NC_022525.1 4431659 4432225 D Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor P 4431659..4432225 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615931.1 CDS IA1_21130 NC_022525.1 4432244 4432420 D acts as and antidote to the bacteriolytic entericidin B in the EcnAB toxin-antitoxin complex; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; entericidin A 4432244..4432420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615932.1 CDS IA1_21135 NC_022525.1 4432528 4432674 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; entericidin B membrane lipoprotein 4432528..4432674 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615933.1 CDS IA1_21140 NC_022525.1 4432705 4433292 R Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein complement(4432705..4433292) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615934.1 CDS IA1_21145 NC_022525.1 4433549 4433866 D member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 4433549..4433866 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615935.1 CDS IA1_21150 NC_022525.1 4433883 4434416 R lipocalin; globomycin-sensitive outer membrane lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein Blc complement(4433883..4434416) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615936.1 CDS IA1_21155 NC_022525.1 4434528 4434887 R in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate reductase subunit D complement(4434528..4434887) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615937.1 CDS IA1_21160 NC_022525.1 4434898 4435293 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate reductase subunit C complement(4434898..4435293) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615938.1 CDS IA1_21165 NC_022525.1 4435304 4436038 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate reductase iron-sulfur subunit complement(4435304..4436038) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615939.1 CDS IA1_21170 NC_022525.1 4436031 4437821 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate reductase flavoprotein subunit complement(4436031..4437821) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615940.1 CDS IA1_21175 NC_022525.1 4438144 4439121 D poxA; regulates pyruvate oxidase poxB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lysyl-tRNA synthetase 4438144..4439121 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615941.1 CDS IA1_21180 NC_022525.1 4439347 4440849 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease 4439347..4440849 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615942.1 CDS IA1_21185 NC_022525.1 4440901 4441215 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4440901..4441215 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615943.1 CDS IA1_21190 NC_022525.1 4441282 4444608 R Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive channel protein complement(4441282..4444608) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615944.1 CDS psd NC_022525.1 4444627 4445595 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylserine decarboxylase complement(4444627..4445595) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615945.1 CDS IA1_21200 NC_022525.1 4445687 4446739 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase RsgA complement(4445687..4446739) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615946.1 CDS IA1_21205 NC_022525.1 4446846 4447391 D 3'-5' exoribonuclease specific for small oligoribonuclotides; Derived by automated computational analysis using gene prediction method: Protein Homology.; oligoribonuclease 4446846..4447391 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615947.1 CDS IA1_21210 NC_022525.1 4447453 4448172 R with ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine ABC transporter substrate-binding protein complement(4447453..4448172) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615948.1 CDS IA1_21225 NC_022525.1 4449045 4450199 R Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster binding protein complement(4449045..4450199) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615949.1 CDS IA1_21230 NC_022525.1 4450183 4451730 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbohydrate kinase 4450183..4451730 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615950.1 CDS IA1_21235 NC_022525.1 4451702 4452163 D needed for nucleoid integrity; possibly involved in cell wall synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-binding protein 4451702..4452163 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615951.1 CDS IA1_21240 NC_022525.1 4452180 4453499 D Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase 4452180..4453499 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615952.1 CDS IA1_21245 NC_022525.1 4453509 4455365 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA mismatch repair protein 4453509..4455365 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615953.1 CDS miaA NC_022525.1 4455358 4456308 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA delta(2)-isopentenylpyrophosphate transferase 4455358..4456308 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615954.1 CDS hfq NC_022525.1 4456391 4456699 D HF-I, host factor for RNA phage Q beta replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA-binding protein Hfq 4456391..4456699 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615955.1 CDS IA1_21260 NC_022525.1 4456771 4458051 D involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase HflX 4456771..4458051 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615956.1 CDS IA1_21265 NC_022525.1 4458266 4459525 D with HflC inhibits proteolysis of lambda cII protein by FtsH; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsH 4458266..4459525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615957.1 CDS IA1_21270 NC_022525.1 4459528 4460532 D with HflK inhibits proteolysis of lambda cII protein by FtsH; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsH 4459528..4460532 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615958.1 CDS IA1_21275 NC_022525.1 4460611 4460808 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4460611..4460808 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615959.1 CDS IA1_21280 NC_022525.1 4460911 4462209 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylosuccinate synthetase 4460911..4462209 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615960.1 CDS IA1_21285 NC_022525.1 4462417 4462842 D negatively regulates the transcription of genes upregulated by nitrosative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4462417..4462842 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615961.1 CDS IA1_21290 NC_022525.1 4462880 4465318 D 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; exoribonuclease R 4462880..4465318 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615962.1 CDS IA1_21295 NC_022525.1 4465409 4466140 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA (guanosine-2'-O-)-methyltransferase 4465409..4466140 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615963.1 CDS IA1_21300 NC_022525.1 4466272 4466676 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4466272..4466676 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615964.1 CDS IA1_21305 NC_022525.1 4466691 4467389 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4466691..4467389 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615965.1 CDS IA1_21310 NC_022525.1 4467389 4468459 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4467389..4468459 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615966.1 CDS IA1_21315 NC_022525.1 4468432 4469115 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4468432..4469115 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615967.1 CDS IA1_21320 NC_022525.1 4469133 4469531 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4469133..4469531 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615968.1 CDS IA1_21325 NC_022525.1 4469541 4470179 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4469541..4470179 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615969.1 CDS IA1_21330 NC_022525.1 4470182 4471345 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4470182..4471345 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615970.1 CDS IA1_21335 NC_022525.1 4471430 4473052 D catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; isovaleryl CoA dehydrogenase 4471430..4473052 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615971.1 CDS IA1_21340 NC_022525.1 4473097 4473372 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(4473097..4473372) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615972.1 CDS IA1_21345 NC_022525.1 4473503 4473832 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(4473503..4473832) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615973.1 CDS IA1_21350 NC_022525.1 4474016 4474765 D YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; Derived by automated computational analysis using gene prediction method: Protein Homology.; esterase 4474016..4474765 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615974.1 CDS IA1_21355 NC_022525.1 4474762 4475517 R negative regulator of ulaG and ulaABCDEF; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4474762..4475517) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615975.1 CDS IA1_21360 NC_022525.1 4475622 4476686 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ascorbate 6-phosphate lactonase complement(4475622..4476686) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615976.1 CDS IA1_21365 NC_022525.1 4477058 4478455 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS ascorbate transporter subunit IIC 4477058..4478455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615977.1 CDS IA1_21370 NC_022525.1 4478471 4478776 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS ascorbate transporter subunit IIB 4478471..4478776 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615978.1 CDS IA1_21375 NC_022525.1 4478786 4479250 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS ascorbate transporter subunit IIA 4478786..4479250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615979.1 CDS ulaD NC_022525.1 4479264 4479914 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-keto-L-gulonate-6-phosphate decarboxylase 4479264..4479914 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615980.1 CDS IA1_21385 NC_022525.1 4479924 4480778 D L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; L-xylulose 5-phosphate 3-epimerase 4479924..4480778 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615981.1 CDS araD NC_022525.1 4480778 4481464 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ribulose-5-phosphate 4-epimerase 4480778..4481464 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615982.1 CDS IA1_21395 NC_022525.1 4481595 4481855 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(4481595..4481855) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615983.1 CDS rpsF NC_022525.1 4482341 4482736 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S6 4482341..4482736 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615984.1 CDS IA1_21405 NC_022525.1 4482890 4483057 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; primosomal replication protein N 4482890..4483057 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615985.1 CDS rpsR NC_022525.1 4483062 4483289 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S18 4483062..4483289 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615986.1 CDS rplI NC_022525.1 4483331 4483780 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L9 4483331..4483780 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615987.1 CDS IA1_21420 NC_022525.1 4483928 4484854 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT superfamliy metabolite exporter 4483928..4484854 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615988.1 CDS IA1_21425 NC_022525.1 4484904 4485539 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4484904..4485539) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615989.1 CDS IA1_21430 NC_022525.1 4485759 4486379 D FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase 4485759..4486379 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615990.1 CDS IA1_21435 NC_022525.1 4486675 4488084 D involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine glycine permease 4486675..4488084 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615991.1 CDS IA1_21440 NC_022525.1 4488196 4488858 R Involved in anaerobic NO protection and iron metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster repair di-iron protein complement(4488196..4488858) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615992.1 CDS IA1_21445 NC_022525.1 4488961 4489926 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4488961..4489926) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615993.1 CDS IA1_21450 NC_022525.1 4490007 4490855 R Derived by automated computational analysis using gene prediction method: Protein Homology.; quinone oxidoreductase complement(4490007..4490855) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615994.1 CDS IA1_21455 NC_022525.1 4490943 4491329 D Derived by automated computational analysis using gene prediction method: Protein Homology.; HxlR family transcriptional regulator 4490943..4491329 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615995.1 CDS cpdB NC_022525.1 4491387 4493330 R periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3'-nucleotidase complement(4491387..4493330) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615996.1 CDS IA1_21465 NC_022525.1 4493598 4494338 D catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3'-5'-bisphosphate nucleotidase 4493598..4494338 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615997.1 CDS IA1_21470 NC_022525.1 4494328 4494885 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4494328..4494885) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615998.1 CDS IA1_21475 NC_022525.1 4495213 4495419 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4495213..4495419 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008615999.1 CDS IA1_21480 NC_022525.1 4495504 4496847 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4495504..4496847) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616000.1 CDS IA1_21485 NC_022525.1 4497030 4497668 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; methionine sulfoxide reductase A complement(4497030..4497668) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616001.1 CDS IA1_21490 NC_022525.1 4497881 4499614 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4497881..4499614 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616002.1 CDS IA1_21495 NC_022525.1 4499611 4503390 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4499611..4503390 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616003.1 CDS IA1_21500 NC_022525.1 4503393 4503737 D Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamylcyclotransferase 4503393..4503737 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616004.1 CDS IA1_21505 NC_022525.1 4503791 4504999 R Derived by automated computational analysis using gene prediction method: Protein Homology.; permease complement(4503791..4504999) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616005.1 CDS IA1_21510 NC_022525.1 4504996 4506159 R Derived by automated computational analysis using gene prediction method: Protein Homology.; metallo-dependent hydrolase complement(4504996..4506159) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616006.1 CDS IA1_21515 NC_022525.1 4506569 4507099 R catalyzes the hydrolysis of pyrophosphate to phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; inorganic pyrophosphatase complement(4506569..4507099) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616007.1 CDS IA1_21520 NC_022525.1 4507326 4508324 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-1,6-bisphosphatase complement(4507326..4508324) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616008.1 CDS IA1_21525 NC_022525.1 4508499 4509878 D ligates L-alanyl-gamma-D-glutamyl-meso-diaminopimelate to UDP-N-acetylmuramic acid for reincorporation into peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4508499..4509878 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616009.1 CDS IA1_21530 NC_022525.1 4509875 4510189 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4509875..4510189) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616010.1 CDS IA1_21535 NC_022525.1 4510369 4511202 D Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster assembly protein HesB 4510369..4511202 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616011.1 CDS IA1_21540 NC_022525.1 4511253 4512686 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter complement(4511253..4512686) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616012.1 CDS IA1_21545 NC_022525.1 4512914 4513108 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4512914..4513108) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616013.1 CDS IA1_21550 NC_022525.1 4513145 4514581 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 4513145..4514581 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616014.1 CDS IA1_21555 NC_022525.1 4514934 4515743 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-deoxyglucuronate isomerase complement(4514934..4515743) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616015.1 CDS IA1_21560 NC_022525.1 4515768 4517273 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methylmalonate-semialdehyde dehydrogenase complement(4515768..4517273) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616016.1 CDS IA1_21565 NC_022525.1 4517714 4518538 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 4517714..4518538 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616017.1 CDS IA1_21570 NC_022525.1 4518813 4519718 D Derived by automated computational analysis using gene prediction method: Protein Homology.; inosose dehydratase 4518813..4519718 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616018.1 CDS IA1_21575 NC_022525.1 4519737 4520747 D Derived by automated computational analysis using gene prediction method: Protein Homology.; inositol 2-dehydrogenase 4519737..4520747 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616019.1 CDS IA1_21580 NC_022525.1 4520844 4522187 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lysosomal glucosyl ceramidase 4520844..4522187 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616020.1 CDS IA1_21585 NC_022525.1 4522188 4523021 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease 4522188..4523021 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616021.1 CDS IA1_21590 NC_022525.1 4523018 4524184 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4523018..4524184) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616022.1 CDS IA1_21595 NC_022525.1 4524245 4526176 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 5-dehydro-2-deoxygluconokinase complement(4524245..4526176) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616023.1 CDS IA1_21600 NC_022525.1 4526359 4526484 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4526359..4526484) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616024.1 CDS IA1_21605 NC_022525.1 4526599 4528539 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase 4526599..4528539 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616025.1 CDS IA1_21610 NC_022525.1 4528720 4529742 D Derived by automated computational analysis using gene prediction method: Protein Homology.; myo-inositol 2-dehydrogenase 4528720..4529742 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616026.1 CDS IA1_21615 NC_022525.1 4529815 4531041 D Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 4529815..4531041 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616027.1 CDS IA1_21620 NC_022525.1 4531202 4532017 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4531202..4532017 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616028.1 CDS IA1_21625 NC_022525.1 4532070 4532954 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protein iolH 4532070..4532954 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616029.1 CDS IA1_21630 NC_022525.1 4533010 4533561 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4533010..4533561) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616030.1 CDS pmbA NC_022525.1 4533657 4535009 D protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase PmbA 4533657..4535009 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616031.1 CDS IA1_21640 NC_022525.1 4535108 4535494 D electron transport protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome B562 4535108..4535494 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616032.1 CDS IA1_21645 NC_022525.1 4535791 4536120 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycine dehydrogenase 4535791..4536120 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616033.1 CDS IA1_21650 NC_022525.1 4536131 4536493 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4536131..4536493 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616034.1 CDS IA1_21655 NC_022525.1 4536493 4536795 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoplasmic protein 4536493..4536795 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616035.1 CDS IA1_21660 NC_022525.1 4536818 4537594 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4536818..4537594 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616036.1 CDS IA1_21665 NC_022525.1 4537606 4538250 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4537606..4538250 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616037.1 CDS IA1_21670 NC_022525.1 4538309 4539442 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroorotase 4538309..4539442 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616038.1 CDS IA1_21675 NC_022525.1 4539426 4540544 D Derived by automated computational analysis using gene prediction method: Protein Homology.; L-seryl-tRNA selenium transferase 4539426..4540544 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616039.1 CDS IA1_21685 NC_022525.1 4541298 4543211 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription antiterminator BglG 4541298..4543211 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616040.1 CDS IA1_21690 NC_022525.1 4543289 4543531 D Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional antitoxin/transcriptional repressor RelB 4543289..4543531 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616041.1 CDS IA1_21695 NC_022525.1 4543521 4543805 D Derived by automated computational analysis using gene prediction method: Protein Homology.; RelE toxin 4543521..4543805 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616042.1 CDS IA1_21700 NC_022525.1 4543809 4544273 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; anaerobic ribonucleotide reductase-activating protein complement(4543809..4544273) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616043.1 CDS IA1_21705 NC_022525.1 4544490 4546628 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside triphosphate reductase complement(4544490..4546628) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616044.1 CDS IA1_21710 NC_022525.1 4547037 4548689 R Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose-6-phosphate hydrolase complement(4547037..4548689) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616045.1 CDS IA1_21715 NC_022525.1 4548739 4550157 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS maltose transporter subunit IIBC complement(4548739..4550157) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616046.1 CDS treR NC_022525.1 4550295 4551242 R regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose repressor complement(4550295..4551242) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616047.1 CDS IA1_21725 NC_022525.1 4551626 4554334 D P-type ATPase involved in magnesium influx; Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium-transporting ATPase 4551626..4554334 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616048.1 CDS IA1_21730 NC_022525.1 4554423 4554809 R has endoribonuclease activity on mRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; endoribonuclease L-PSP complement(4554423..4554809) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616049.1 CDS IA1_21735 NC_022525.1 4554886 4555347 R involved in the allosteric regulation of aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate carbamoyltransferase regulatory subunit complement(4554886..4555347) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616050.1 CDS IA1_21740 NC_022525.1 4555360 4556295 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate carbamoyltransferase catalytic subunit complement(4555360..4556295) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616051.1 CDS IA1_21745 NC_022525.1 4556523 4557011 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ArgR family transcriptional regulator complement(4556523..4557011) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616052.1 CDS IA1_21750 NC_022525.1 4557014 4557112 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4557014..4557112 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616053.1 CDS IA1_21755 NC_022525.1 4557198 4558601 R Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter complement(4557198..4558601) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616054.1 CDS IA1_21760 NC_022525.1 4558657 4559661 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine carbamoyltransferase complement(4558657..4559661) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616055.1 CDS IA1_21765 NC_022525.1 4559773 4560705 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamate kinase complement(4559773..4560705) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616056.1 CDS IA1_21770 NC_022525.1 4560716 4561936 R catalyzes the degradation of arginine to citruline and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine deiminase complement(4560716..4561936) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616057.1 CDS IA1_21775 NC_022525.1 4562612 4563064 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Toxin-antitoxin biofilm protein TabA 4562612..4563064 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616058.1 CDS IA1_21780 NC_022525.1 4563138 4564142 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine carbamoyltransferase complement(4563138..4564142) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616059.1 CDS IA1_21785 NC_022525.1 4564308 4564724 D Derived by automated computational analysis using gene prediction method: Protein Homology.; RNase E inhibitor protein 4564308..4564724 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616060.1 CDS IA1_21795 NC_022525.1 4565781 4566269 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4565781..4566269) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616061.1 CDS IA1_21800 NC_022525.1 4566376 4566879 R Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyltransferase complement(4566376..4566879) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616062.1 CDS IA1_21805 NC_022525.1 4567074 4568261 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4567074..4568261 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616063.1 CDS IA1_21810 NC_022525.1 4568403 4571258 R Derived by automated computational analysis using gene prediction method: Protein Homology.; valyl-tRNA synthase complement(4568403..4571258) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616064.1 CDS IA1_21815 NC_022525.1 4571258 4571701 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit chi complement(4571258..4571701) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616065.1 CDS IA1_21820 NC_022525.1 4571838 4573349 R catalyzes the removal of N-terminal amino acids preferably from various peptides; a cyteinylglycinase, transcription regulator and site-specific recombination factor; Derived by automated computational analysis using gene prediction method: Protein Homology.; multifunctional aminopeptidase A complement(4571838..4573349) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616066.1 CDS IA1_21825 NC_022525.1 4573744 4574844 D with LptBGC is involved in lipopolysaccharide export; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide ABC transporter permease LptF 4573744..4574844 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616067.1 CDS IA1_21830 NC_022525.1 4574844 4575926 D with LptABCF is involved in the transport of lipopolysaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide ABC transporter permease 4574844..4575926 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616068.1 CDS IA1_21835 NC_022525.1 4576122 4577120 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4576122..4577120) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616069.1 CDS IA1_21840 NC_022525.1 4577184 4578503 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fructuronate transporter complement(4577184..4578503) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616070.1 CDS IA1_21845 NC_022525.1 4578565 4579329 R catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-deoxy-D-gluconate 3-dehydrogenase complement(4578565..4579329) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616071.1 CDS IA1_21850 NC_022525.1 4579354 4580385 R NAD-binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-idonate 5-dehydrogenase complement(4579354..4580385) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616072.1 CDS idnK NC_022525.1 4580602 4581132 D Derived by automated computational analysis using gene prediction method: Protein Homology.; D-gluconate kinase 4580602..4581132 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616073.1 CDS IA1_21860 NC_022525.1 4581160 4582179 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase complement(4581160..4582179) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616074.1 CDS IA1_21870 NC_022525.1 4582676 4583926 D Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase 4582676..4583926 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616075.1 CDS IA1_21875 NC_022525.1 4584038 4584847 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4584038..4584847 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616076.1 CDS IA1_21880 NC_022525.1 4585014 4585229 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4585014..4585229 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616077.1 CDS IA1_21885 NC_022525.1 4585250 4585564 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4585250..4585564 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616078.1 CDS IA1_21890 NC_022525.1 4585994 4587049 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 4585994..4587049 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616079.1 CDS IA1_21895 NC_022525.1 4587042 4588352 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 4587042..4588352 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616080.1 CDS IA1_21900 NC_022525.1 4588349 4590223 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA-binding protein 4588349..4590223 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616081.1 CDS IA1_21905 NC_022525.1 4590238 4590624 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4590238..4590624 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616082.1 CDS IA1_21910 NC_022525.1 4590712 4591149 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4590712..4591149 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616083.1 CDS IA1_21915 NC_022525.1 4591241 4591942 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4591241..4591942 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616084.1 CDS IA1_21920 NC_022525.1 4592284 4592601 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4592284..4592601) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616085.1 CDS IA1_21925 NC_022525.1 4592621 4593007 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4592621..4593007) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616086.1 CDS IA1_21930 NC_022525.1 4593340 4593438 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4593340..4593438 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616087.1 CDS IA1_21935 NC_022525.1 4593538 4594803 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; relaxase complement(4593538..4594803) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616088.1 CDS IA1_21940 NC_022525.1 4594772 4595212 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4594772..4595212) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616089.1 CDS IA1_21945 NC_022525.1 4595616 4595795 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4595616..4595795) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616090.1 CDS IA1_21950 NC_022525.1 4595786 4596694 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4595786..4596694 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616091.1 CDS IA1_21955 NC_022525.1 4596707 4597315 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4596707..4597315 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616092.1 CDS IA1_21960 NC_022525.1 4597539 4598813 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; modification methylase complement(4597539..4598813) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616093.1 CDS IA1_21965 NC_022525.1 4598878 4600500 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4598878..4600500 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616094.1 CDS IA1_21970 NC_022525.1 4600650 4601369 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4600650..4601369) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616095.1 CDS IA1_21975 NC_022525.1 4601814 4602689 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4601814..4602689 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616096.1 CDS IA1_21980 NC_022525.1 4603168 4603893 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4603168..4603893) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616097.1 CDS IA1_21985 NC_022525.1 4604443 4606074 R Derived by automated computational analysis using gene prediction method: Protein Homology.; SAM-dependent methyltransferase complement(4604443..4606074) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616098.1 CDS IA1_21990 NC_022525.1 4606079 4606336 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4606079..4606336) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616099.1 CDS IA1_21995 NC_022525.1 4606824 4607432 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4606824..4607432 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616100.1 CDS IA1_22000 NC_022525.1 4607784 4608695 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4607784..4608695 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616101.1 CDS IA1_22005 NC_022525.1 4608993 4609361 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4608993..4609361 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616102.1 CDS IA1_22010 NC_022525.1 4609358 4610050 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dienelactone hydrolase complement(4609358..4610050) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616103.1 CDS IA1_22015 NC_022525.1 4610382 4611155 D regulates the expression of uxuBA; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4610382..4611155 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616104.1 CDS IA1_22020 NC_022525.1 4611156 4612169 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophanyl-tRNA synthetase complement(4611156..4612169) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616105.1 CDS IA1_22025 NC_022525.1 4612970 4613416 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4612970..4613416 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616106.1 CDS IA1_22030 NC_022525.1 4613655 4614389 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate racemase 4613655..4614389 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616107.1 CDS IA1_22035 NC_022525.1 4614395 4615303 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell density-dependent motility repressor complement(4614395..4615303) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616108.1 CDS IA1_22040 NC_022525.1 4615422 4616594 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; isoaspartyl dipeptidase complement(4615422..4616594) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616109.1 CDS IA1_22045 NC_022525.1 4616607 4617068 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4616607..4617068) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616110.1 CDS IA1_22050 NC_022525.1 4617065 4617736 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4617065..4617736) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616111.1 CDS IA1_22055 NC_022525.1 4618609 4619793 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4618609..4619793) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616112.1 CDS IA1_22060 NC_022525.1 4620013 4621284 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4620013..4621284) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616113.1 CDS IA1_22065 NC_022525.1 4621371 4622612 R Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(4621371..4622612) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616114.1 CDS IA1_22070 NC_022525.1 4623091 4624056 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4623091..4624056 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616115.1 CDS IA1_22075 NC_022525.1 4624053 4624166 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4624053..4624166) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616116.1 CDS IA1_22080 NC_022525.1 4624237 4625607 D in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate-semialdehyde dehdyrogenase 4624237..4625607 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616117.1 CDS IA1_22085 NC_022525.1 4625812 4625976 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4625812..4625976 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616118.1 CDS IA1_22090 NC_022525.1 4626053 4626973 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transporter complement(4626053..4626973) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616119.1 CDS IA1_22095 NC_022525.1 4627109 4628962 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4627109..4628962 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616120.1 CDS IA1_22100 NC_022525.1 4629007 4629327 R involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; endoribonuclease SymE complement(4629007..4629327) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616121.1 CDS IA1_22105 NC_022525.1 4629544 4631322 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4629544..4631322) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616122.1 CDS IA1_22110 NC_022525.1 4631322 4632791 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; restriction endonuclease EcoEI subunit M complement(4631322..4632791) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616123.1 CDS IA1_22115 NC_022525.1 4632862 4635291 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DEAD/DEAH box helicase complement(4632862..4635291) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616124.1 CDS IA1_22120 NC_022525.1 4635433 4636401 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4635433..4636401 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616125.1 CDS IA1_22125 NC_022525.1 4636517 4637473 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein YjiA complement(4636517..4637473) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616126.1 CDS IA1_22130 NC_022525.1 4637484 4637687 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4637484..4637687) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616127.1 CDS IA1_22135 NC_022525.1 4637782 4639932 R Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon starvation protein CstA complement(4637782..4639932) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616128.1 CDS IA1_22140 NC_022525.1 4640299 4641960 D serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein 4640299..4641960 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616129.1 CDS IA1_22145 NC_022525.1 4642284 4645049 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-54 dependent transcriptional regulator 4642284..4645049 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616130.1 CDS IA1_22150 NC_022525.1 4645151 4645573 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter 4645151..4645573 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616131.1 CDS IA1_22155 NC_022525.1 4645588 4646049 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter 4645588..4646049 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616132.1 CDS IA1_22160 NC_022525.1 4646075 4646854 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter 4646075..4646854 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616133.1 CDS IA1_22165 NC_022525.1 4646832 4647680 D hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IID 4646832..4647680 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616134.1 CDS IA1_22170 NC_022525.1 4647693 4648754 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosamine--fructose-6-phosphate aminotransferase 4647693..4648754 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616135.1 CDS IA1_22175 NC_022525.1 4648772 4649782 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosamine--fructose-6-phosphate aminotransferase 4648772..4649782 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616136.1 CDS IA1_22180 NC_022525.1 4649916 4652207 R catalyzes the transfer of phosphoglycerol to the glucan backbone; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerol transferase complement(4649916..4652207) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616137.1 CDS IA1_22185 NC_022525.1 4652490 4652951 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4652490..4652951) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616138.1 CDS IA1_22190 NC_022525.1 4653009 4653746 R acts to load the DnaB helicase onto the initiation site during DNA replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA replication protein DnaC complement(4653009..4653746) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616139.1 CDS IA1_22195 NC_022525.1 4653749 4654288 R This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'; Derived by automated computational analysis using gene prediction method: Protein Homology.; primosomal protein DnaI complement(4653749..4654288) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616140.1 CDS IA1_22200 NC_022525.1 4654381 4654854 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4654381..4654854) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616141.1 CDS IA1_22205 NC_022525.1 4654845 4655789 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(4654845..4655789) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616142.1 CDS IA1_22210 NC_022525.1 4656334 4657059 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 4656334..4657059 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616143.1 CDS IA1_22215 NC_022525.1 4657071 4657694 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4657071..4657694 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616144.1 CDS IA1_22220 NC_022525.1 4657745 4658203 R Derived by automated computational analysis using gene prediction method: Protein Homology.; prolyl-tRNA synthetase complement(4657745..4658203) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616145.1 CDS IA1_22225 NC_022525.1 4658354 4659142 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ferric iron reductase involved in ferric hydroximate transport complement(4658354..4659142) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616146.1 CDS IA1_22230 NC_022525.1 4659263 4660327 R Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase complement(4659263..4660327) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616147.1 CDS IA1_22235 NC_022525.1 4660539 4660814 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4660539..4660814 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616148.1 CDS rsmC NC_022525.1 4661354 4662382 R 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase complement(4661354..4662382) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616149.1 CDS IA1_22260 NC_022525.1 4662485 4662922 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit psi 4662485..4662922 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616150.1 CDS rimI NC_022525.1 4662867 4663313 D alanine acetyltransferase that specifically acetylates ribosomal protein S18; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; alanine acetyltransferase 4662867..4663313 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616151.1 CDS IA1_22270 NC_022525.1 4663335 4664012 D manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; Derived by automated computational analysis using gene prediction method: Protein Homology.; dUMP phosphatase 4663335..4664012 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616152.1 CDS prfC NC_022525.1 4664104 4665693 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 3 4664104..4665693 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616153.1 CDS IA1_22280 NC_022525.1 4666095 4666712 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4666095..4666712 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616154.1 CDS IA1_22285 NC_022525.1 4666841 4667002 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4666841..4667002 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616155.1 CDS IA1_22290 NC_022525.1 4667126 4668199 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4667126..4668199 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616156.1 CDS IA1_22295 NC_022525.1 4668196 4668969 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; deoxyribonuclease 4668196..4668969 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616157.1 CDS IA1_22300 NC_022525.1 4669002 4669865 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate formate lyase-activating enzyme complement(4669002..4669865) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616158.1 CDS IA1_22305 NC_022525.1 4669837 4671387 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4669837..4671387) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616159.1 CDS IA1_22310 NC_022525.1 4671629 4672426 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyribose-phosphate aldolase 4671629..4672426 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616160.1 CDS IA1_22315 NC_022525.1 4672550 4673872 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidine phosphorylase 4672550..4673872 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616161.1 CDS IA1_22320 NC_022525.1 4673924 4675147 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopentomutase 4673924..4675147 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616162.1 CDS deoD NC_022525.1 4675357 4676076 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; purine nucleoside phosphorylase 4675357..4676076 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616163.1 CDS IA1_22330 NC_022525.1 4676114 4676686 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(4676114..4676686) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616164.1 CDS IA1_22335 NC_022525.1 4676683 4679091 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(4676683..4679091) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616165.1 CDS IA1_22340 NC_022525.1 4679105 4679812 R member of the periplasmic pilus chaperone family of proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(4679105..4679812) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616166.1 CDS IA1_22345 NC_022525.1 4679890 4680579 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4679890..4680579) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616167.1 CDS IA1_22350 NC_022525.1 4680627 4681316 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4680627..4681316) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616168.1 CDS lplA NC_022525.1 4681629 4682645 R Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoate-protein ligase A complement(4681629..4682645) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616169.1 CDS IA1_22360 NC_022525.1 4682679 4683323 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4682679..4683323) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616170.1 CDS IA1_22365 NC_022525.1 4683440 4684408 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 4683440..4684408 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616171.1 CDS IA1_22370 NC_022525.1 4684492 4685874 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair protein RadA 4684492..4685874 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616172.1 CDS IA1_22375 NC_022525.1 4685998 4687257 D catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside; also has a regulatory function; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4685998..4687257 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616173.1 CDS IA1_22380 NC_022525.1 4687375 4689042 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter ATP-binding protein complement(4687375..4689042) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616174.1 CDS IA1_22385 NC_022525.1 4689251 4691188 D catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic murein transglycosylase 4689251..4691188 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616175.1 CDS IA1_22390 NC_022525.1 4691246 4691572 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Derived by automated computational analysis using gene prediction method: Protein Homology.; Trp operon repressor 4691246..4691572 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616176.1 CDS yjjX NC_022525.1 4691674 4692189 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; Derived by automated computational analysis using gene prediction method: Protein Homology.; inosine/xanthosine triphosphatase complement(4691674..4692189) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616177.1 CDS IA1_22400 NC_022525.1 4692238 4692885 D catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerate mutase 4692238..4692885 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616178.1 CDS IA1_22405 NC_022525.1 4692882 4693751 R AraC family; binds to the right arm of the replication origin oriC; Derived by automated computational analysis using gene prediction method: Protein Homology.; right origin-binding protein complement(4692882..4693751) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616179.1 CDS IA1_22410 NC_022525.1 4693963 4694436 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4693963..4694436 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616180.1 CDS IA1_22415 NC_022525.1 4694449 4695138 D response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4694449..4695138 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616181.1 CDS IA1_22420 NC_022525.1 4695138 4696562 D part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase 4695138..4696562 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616182.1 CDS IA1_22425 NC_022525.1 4696620 4697969 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4696620..4697969 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616183.1 CDS IA1_22430 NC_022525.1 4698027 4699112 R Derived by automated computational analysis using gene prediction method: Protein Homology.; major fimbrial protein SthE complement(4698027..4699112) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616184.1 CDS IA1_22435 NC_022525.1 4699153 4699710 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein SthD complement(4699153..4699710) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616185.1 CDS IA1_22440 NC_022525.1 4699728 4702265 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial outer membrane usher protein SthC complement(4699728..4702265) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616186.1 CDS IA1_22445 NC_022525.1 4702311 4702994 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial assembly chaperone complement(4702311..4702994) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616187.1 CDS IA1_22450 NC_022525.1 4703065 4703610 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein SthA complement(4703065..4703610) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616188.1 CDS IA1_22455 NC_022525.1 4703949 4704620 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4703949..4704620) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616189.1 CDS IA1_22460 NC_022525.1 4705005 4705319 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4705005..4705319) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616190.1 CDS IA1_22465 NC_022525.1 4705586 4706302 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4705586..4706302) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 YP_008616191.1 CDS IA1_22470 NC_022525.1 4706938 4707624 D member of the SPOUT superfamily of methyltransferases; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA methyltransferase 4706938..4707624 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_01340 tRNA IA1_01340 NC_022525.1 305128 305204 D tRNA-Ile 305128..305204 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_01345 tRNA IA1_01345 NC_022525.1 305316 305391 D tRNA-Ala 305316..305391 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_01360 tRNA IA1_01360 NC_022525.1 308913 308989 D tRNA-Asp 308913..308989 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_01415 tRNA IA1_01415 NC_022525.1 318352 318428 D tRNA-Asp 318352..318428 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_01755 tRNA IA1_01755 NC_022525.1 391780 391855 D tRNA-Thr 391780..391855 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_02910 tRNA IA1_02910 NC_022525.1 637167 637243 D tRNA-Arg 637167..637243 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_03515 tRNA IA1_03515 NC_022525.1 757872 757946 R tRNA-Gln complement(757872..757946) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_03520 tRNA IA1_03520 NC_022525.1 757990 758064 R tRNA-Gln complement(757990..758064) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_03525 tRNA IA1_03525 NC_022525.1 758111 758187 R tRNA-Met complement(758111..758187) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_03825 tRNA IA1_03825 NC_022525.1 825603 825678 D tRNA-Lys 825603..825678 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_03830 tRNA IA1_03830 NC_022525.1 825815 825890 D tRNA-Val 825815..825890 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_03835 tRNA IA1_03835 NC_022525.1 825894 825969 D tRNA-Lys 825894..825969 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_03840 tRNA IA1_03840 NC_022525.1 826109 826184 D tRNA-Lys 826109..826184 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_03845 tRNA IA1_03845 NC_022525.1 826319 826394 D tRNA-Lys 826319..826394 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_04625 tRNA IA1_04625 NC_022525.1 989579 989666 R tRNA-Ser complement(989579..989666) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_05350 tRNA IA1_05350 NC_022525.1 1141724 1141811 D tRNA-Ser 1141724..1141811 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_05580 tRNA IA1_05580 NC_022525.1 1190780 1190867 R tRNA-Ser complement(1190780..1190867) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_06150 tRNA IA1_06150 NC_022525.1 1299241 1299317 D tRNA-Arg 1299241..1299317 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_06225 tRNA IA1_06225 NC_022525.1 1311679 1311755 D tRNA-Arg 1311679..1311755 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_07020 tRNA IA1_07020 NC_022525.1 1465129 1465205 R tRNA-Val complement(1465129..1465205) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_07025 tRNA IA1_07025 NC_022525.1 1465216 1465292 R tRNA-Val complement(1465216..1465292) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_08720 tRNA IA1_08720 NC_022525.1 1817715 1817799 D tRNA-Tyr 1817715..1817799 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_08725 tRNA IA1_08725 NC_022525.1 1818004 1818088 D tRNA-Tyr 1818004..1818088 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_09650 tRNA IA1_09650 NC_022525.1 2000328 2000414 R tRNA-Leu complement(2000328..2000414) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_09655 tRNA IA1_09655 NC_022525.1 2000426 2000499 R tRNA-Cys complement(2000426..2000499) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_09660 tRNA IA1_09660 NC_022525.1 2000552 2000627 R tRNA-Gly complement(2000552..2000627) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_09925 tRNA IA1_09925 NC_022525.1 2046438 2046527 R tRNA-Ser complement(2046438..2046527) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_09935 tRNA IA1_09935 NC_022525.1 2047514 2047589 D tRNA-Asn 2047514..2047589 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_09950 tRNA IA1_09950 NC_022525.1 2048484 2048559 D tRNA-Asn 2048484..2048559 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_10010 tRNA IA1_10010 NC_022525.1 2058423 2058498 R tRNA-Asn complement(2058423..2058498) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_10020 tRNA IA1_10020 NC_022525.1 2060256 2060331 D tRNA-Asn 2060256..2060331 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_11150 tRNA IA1_11150 NC_022525.1 2300670 2300746 D tRNA-Pro 2300670..2300746 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_11945 tRNA IA1_11945 NC_022525.1 2466034 2466108 D tRNA-Arg 2466034..2466108 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_12035 tRNA IA1_12035 NC_022525.1 2489147 2489222 R tRNA-Ala complement(2489147..2489222) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_12040 tRNA IA1_12040 NC_022525.1 2489265 2489340 R tRNA-Ala complement(2489265..2489340) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_12060 tRNA IA1_12060 NC_022525.1 2492046 2492121 D tRNA-Val 2492046..2492121 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_12065 tRNA IA1_12065 NC_022525.1 2492167 2492242 D tRNA-Val 2492167..2492242 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_12070 tRNA IA1_12070 NC_022525.1 2492284 2492359 D tRNA-Val 2492284..2492359 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_12075 tRNA IA1_12075 NC_022525.1 2492364 2492439 D tRNA-Lys 2492364..2492439 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_13020 tRNA IA1_13020 NC_022525.1 2713214 2713289 R tRNA-Glu complement(2713214..2713289) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_13480 tRNA IA1_13480 NC_022525.1 2823136 2823212 R tRNA-Arg complement(2823136..2823212) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_13485 tRNA IA1_13485 NC_022525.1 2823406 2823482 R tRNA-Arg complement(2823406..2823482) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_13490 tRNA IA1_13490 NC_022525.1 2823545 2823621 R tRNA-Arg complement(2823545..2823621) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_13495 tRNA IA1_13495 NC_022525.1 2823683 2823759 R tRNA-Arg complement(2823683..2823759) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_13500 tRNA IA1_13500 NC_022525.1 2823763 2823855 R tRNA-Ser complement(2823763..2823855) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_14385 tRNA IA1_14385 NC_022525.1 3004113 3004189 D tRNA-Met 3004113..3004189 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_14390 tRNA IA1_14390 NC_022525.1 3004220 3004296 D tRNA-Met 3004220..3004296 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_14635 tRNA IA1_14635 NC_022525.1 3059734 3059807 R tRNA-Gly complement(3059734..3059807) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_15040 tRNA IA1_15040 NC_022525.1 3138443 3138518 D tRNA-Phe 3138443..3138518 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_15540 tRNA IA1_15540 NC_022525.1 3241331 3241406 D tRNA-Met 3241331..3241406 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_15920 tRNA IA1_15920 NC_022525.1 3320385 3320461 R tRNA-Met complement(3320385..3320461) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_15930 tRNA IA1_15930 NC_022525.1 3322346 3322432 R tRNA-Leu complement(3322346..3322432) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_16455 tRNA IA1_16455 NC_022525.1 3427398 3427473 R tRNA-Thr complement(3427398..3427473) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_16470 tRNA IA1_16470 NC_022525.1 3430903 3430978 R tRNA-Glu complement(3430903..3430978) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_17635 tRNA IA1_17635 NC_022525.1 3680110 3680186 R tRNA-Pro complement(3680110..3680186) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_18235 tRNA IA1_18235 NC_022525.1 3808672 3808766 D tRNA-Sec 3808672..3808766 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_18920 tRNA IA1_18920 NC_022525.1 3954989 3955064 D tRNA-Glu 3954989..3955064 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_18935 tRNA IA1_18935 NC_022525.1 3958510 3958586 D tRNA-Asp 3958510..3958586 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_18940 tRNA IA1_18940 NC_022525.1 3958595 3958670 D tRNA-Trp 3958595..3958670 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_19110 tRNA IA1_19110 NC_022525.1 3994819 3994895 D tRNA-Arg 3994819..3994895 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_19115 tRNA IA1_19115 NC_022525.1 3994950 3995025 D tRNA-His 3994950..3995025 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_19120 tRNA IA1_19120 NC_022525.1 3995046 3995132 D tRNA-Leu 3995046..3995132 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_19125 tRNA IA1_19125 NC_022525.1 3995175 3995251 D tRNA-Pro 3995175..3995251 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_19385 tRNA IA1_19385 NC_022525.1 4050006 4050082 D tRNA-Ile 4050006..4050082 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_19390 tRNA IA1_19390 NC_022525.1 4050194 4050269 D tRNA-Ala 4050194..4050269 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_20110 tRNA IA1_20110 NC_022525.1 4206297 4206373 D tRNA-Ile 4206297..4206373 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_20115 tRNA IA1_20115 NC_022525.1 4206485 4206560 D tRNA-Ala 4206485..4206560 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_20145 tRNA IA1_20145 NC_022525.1 4213345 4213420 D tRNA-Thr 4213345..4213420 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_20150 tRNA IA1_20150 NC_022525.1 4213429 4213513 D tRNA-Tyr 4213429..4213513 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_20155 tRNA IA1_20155 NC_022525.1 4213630 4213704 D tRNA-Gly 4213630..4213704 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_20160 tRNA IA1_20160 NC_022525.1 4213711 4213786 D tRNA-Thr 4213711..4213786 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_20320 tRNA IA1_20320 NC_022525.1 4248286 4248361 D tRNA-Glu 4248286..4248361 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_21060 tRNA IA1_21060 NC_022525.1 4418628 4418703 R tRNA-Phe complement(4418628..4418703) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_21215 tRNA IA1_21215 NC_022525.1 4448468 4448543 D tRNA-Gly 4448468..4448543 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_21220 tRNA IA1_21220 NC_022525.1 4448700 4448775 D tRNA-Gly 4448700..4448775 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_21865 tRNA IA1_21865 NC_022525.1 4582402 4582486 D tRNA-Leu 4582402..4582486 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_22240 tRNA IA1_22240 NC_022525.1 4660846 4660932 R tRNA-Leu complement(4660846..4660932) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_22245 tRNA IA1_22245 NC_022525.1 4660964 4661050 R tRNA-Leu complement(4660964..4661050) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_22250 tRNA IA1_22250 NC_022525.1 4661078 4661164 R tRNA-Leu complement(4661078..4661164) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_01335 rRNA IA1_01335 NC_022525.1 303517 305058 D 16S ribosomal RNA 303517..305058 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_01350 rRNA IA1_01350 NC_022525.1 305654 308661 D 23S ribosomal RNA 305654..308661 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_01355 rRNA IA1_01355 NC_022525.1 308743 308858 D 5S ribosomal RNA 308743..308858 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_13010 rRNA IA1_13010 NC_022525.1 2709905 2710019 R 5S ribosomal RNA complement(2709905..2710019) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_13015 rRNA IA1_13015 NC_022525.1 2710102 2713029 R 23S ribosomal RNA complement(2710102..2713029) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_13025 rRNA IA1_13025 NC_022525.1 2713375 2714916 R 16S ribosomal RNA complement(2713375..2714916) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_16450 rRNA IA1_16450 NC_022525.1 3427243 3427358 R 5S ribosomal RNA complement(3427243..3427358) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_16460 rRNA IA1_16460 NC_022525.1 3427488 3427603 R 5S ribosomal RNA complement(3427488..3427603) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_16465 rRNA IA1_16465 NC_022525.1 3427790 3430718 R 23S ribosomal RNA complement(3427790..3430718) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_16475 rRNA IA1_16475 NC_022525.1 3431063 3432604 R 16S ribosomal RNA complement(3431063..3432604) Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_18915 rRNA IA1_18915 NC_022525.1 3953363 3954904 D 16S ribosomal RNA 3953363..3954904 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_18925 rRNA IA1_18925 NC_022525.1 3955249 3958258 D 23S ribosomal RNA 3955249..3958258 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_18930 rRNA IA1_18930 NC_022525.1 3958340 3958455 D 5S ribosomal RNA 3958340..3958455 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_19380 rRNA IA1_19380 NC_022525.1 4048396 4049937 D 16S ribosomal RNA 4048396..4049937 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_19395 rRNA IA1_19395 NC_022525.1 4050441 4053450 D 23S ribosomal RNA 4050441..4053450 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_19400 rRNA IA1_19400 NC_022525.1 4053637 4053752 D 5S ribosomal RNA 4053637..4053752 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_20105 rRNA IA1_20105 NC_022525.1 4204686 4206227 D 16S ribosomal RNA 4204686..4206227 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_20120 rRNA IA1_20120 NC_022525.1 4206734 4209592 D 23S ribosomal RNA 4206734..4209592 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_20125 rRNA IA1_20125 NC_022525.1 4209674 4209789 D 5S ribosomal RNA 4209674..4209789 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_20315 rRNA IA1_20315 NC_022525.1 4246658 4248200 D 16S ribosomal RNA 4246658..4248200 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_20325 rRNA IA1_20325 NC_022525.1 4248585 4251597 D 23S ribosomal RNA 4248585..4251597 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 IA1_20330 rRNA IA1_20330 NC_022525.1 4251782 4251897 D 5S ribosomal RNA 4251782..4251897 Salmonella enterica subsp. enterica serovar Thompson str. RM6836