-- dump date   	20140620_054943
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_005235539.1	sdiA-regulated protein
YP_005235541.1	sdiA-regulated protein
YP_005235542.1	sdiA-regulated protein
YP_005235566.1	involved in Salmonella plasmid virulence
YP_005235567.1	involved in Salmonella plasmid virulence
YP_005235568.1	involved in Salmonella plasmid virulence
YP_005235569.1	involved in Salmonella plasmid virulence
YP_005235570.1	involved in Salmonella plasmid virulence
YP_005235583.1	mutagenesis by UV and mutagens; related to umuDC operon
YP_005235584.1	mutagenesis by UV and mutagens; related to umuDC operon
YP_005235629.1	similar to Shigella flexneri mvpA
YP_005235634.1	similar to Escherichia coli thr operon leader peptide (AAC73112.1)
YP_005235635.1	multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways
YP_005235636.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_005235637.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_005235639.1	similar to Escherichia coli inner membrane transport protein (AAC73118.1); AGCS family
YP_005235640.1	Maintains the balance of metabolites in the pentose-phosphate pathway
YP_005235641.1	forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis
YP_005235643.1	similar to Escherichia coli putative oxidoreductase (AAC73122.1); regulator for sigma H promoters/sigma 32 promoters permitting growth at high temperature
YP_005235646.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_005235647.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_005235649.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73704.1); LysR family
YP_005235652.1	similar to Escherichia coli putative sensory transducer (AAC75886.1)
YP_005235661.1	fimbrial subunit (gi|4959511)
YP_005235662.2	fimbrial chaperone (gi|4959512)
YP_005235663.1	bovine colonization factor BcfC (gi|4530570)
YP_005235664.1	fimbrial subunit (gi|4959514)
YP_005235665.1	fimbrial subunit (gi|4959515)
YP_005235666.1	fimbrial subunit (gi|4959516)
YP_005235667.1	fimbrial chaperone (gi|4959517)
YP_005235670.1	putative transcriptional regulator MarT (gi|4324612)
YP_005235671.1	similar to LeuO (gi|6650098); LysR family
YP_005235672.1	putative transcriptional regulator MarT (gi|4324612)
YP_005235675.1	similar to Escherichia coli UDP-sugar hydrolase (5'-nucleotidase) (AAC73582.1)
YP_005235676.1	similar to Escherichia coli putative sugar hydrolase (AAC75461.1)
YP_005235677.1	similar to Escherichia coli putative sulfatase (AAC76701.1)
YP_005235678.1	similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1)
YP_005235681.1	exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH
YP_005235682.1	Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC
YP_005235684.1	similar to Escherichia coli putative permease (AAC76681.1)
YP_005235685.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_005235687.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_005235688.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_005235689.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_005235691.1	similar to Escherichia coli FKBX-type 16KD peptidyl-prolyl cis-trans isomerase; rotamase (AAC73139.1)
YP_005235692.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_005235694.1	catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides
YP_005235695.1	similar to Escherichia coli sequence similarity to Shigella regulator (AAC73721.1); sensor for citrate
YP_005235696.1	similar to Escherichia coli putative sensor-type protein (AAC73720.1); histidine kinase for citrate
YP_005235697.1	oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY)
YP_005235698.1	catalyzes the formation of oxaloacetate from pyruvate
YP_005235699.1	catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide
YP_005235702.1	similar to Escherichia coli citrate lyase synthetase; citrate (pro-3S)-lyase ligase (AAC73719.1)
YP_005235703.1	acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate
YP_005235704.1	similar to Escherichia coli citrate lyase beta chain; acyl lyase subunit (AAC73717.1)
YP_005235705.1	similar to Escherichia coli citrate lyase alpha chain (AAC73716.1)
YP_005235707.1	putative modifier of citrate lyase protein
YP_005235708.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_005235710.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_005235711.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_005235713.1	transposase for insertion sequence element IS200 (SW:T200_SALTY)
YP_005235714.1	regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons
YP_005235715.1	involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities
YP_005235716.1	catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA
YP_005235717.1	similar to Escherichia coli probable crotonobetaine/carnitine-CoA ligase (AAC73148.1)
YP_005235718.1	catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine
YP_005235720.1	catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA
YP_005235721.1	catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism
YP_005235723.1	required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase
YP_005235724.1	involved in electron transfer during carnitine metabolism
YP_005235725.1	FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction
YP_005235726.1	similar to Escherichia coli putative ferredoxin (AAC73155.1); carnitine metabolism
YP_005235727.1	similar to Escherichia coli putative transport protein (AAC73156.1); MFS family
YP_005235733.1	similar to Escherichia coli putative sulfatase (AAC76701.1)
YP_005235736.1	Required for full activity of KefC, a potassium-proton antiporter
YP_005235737.1	transport system that facilitates potassium-efflux
YP_005235739.1	catalyzes the reduction of dihydrofolate to tetrahydrofolate
YP_005235740.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_005235741.1	protein associated with Co2+ and Mg2+ efflux
YP_005235742.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_005235743.1	NAD-dependent; catalyzes the oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which then decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_005235744.1	Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB
YP_005235745.1	determines N-hexane tolerance and is involved in outer membrane permeability
YP_005235747.1	functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system
YP_005235748.1	catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs
YP_005235749.1	transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA
YP_005235750.1	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C
YP_005235753.1	catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
YP_005235754.1	catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism
YP_005235755.1	catalyzes the phosphorylation of ribulose to ribulose 5-phosphate
YP_005235756.1	positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose
YP_005235757.1	DedA family
YP_005235758.1	with TbpA and ThiP is part of the thiamine and TPP transport system
YP_005235759.1	permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine
YP_005235760.1	part of the thiamine and TPP transport system tbpA-thiPQ
YP_005235762.1	activates sgrS under glucose-phosphate stress conditions
YP_005235764.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_005235765.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_005235766.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_005235767.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_005235768.1	leu operon leader peptide (SW:LPL_SALTY)
YP_005235771.1	activator for leuABCD operon; member of LysR family of transcriptional activators
YP_005235772.1	catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive
YP_005235773.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_005235775.1	binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism
YP_005235778.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_005235779.1	similar to Escherichia coli putative apolipoprotein (AAC73193.1)
YP_005235780.1	membrane bound cell division protein at septum containing leucine zipper motif
YP_005235781.1	similar to Escherichia coli septum formation; penicillin-binding protein 3; peptidoglycan synthetase (AAC73195.1)
YP_005235782.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_005235783.1	similar to Escherichia coli D-alanine-D-alanine-adding enzyme (AAC73197.1)
YP_005235784.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_005235785.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_005235786.1	integral membrane protein involved in stabilizing FstZ ring during cell division
YP_005235787.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_005235788.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_005235789.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_005235790.1	involved in septum formation
YP_005235791.1	ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane
YP_005235792.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_005235793.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_005235794.1	secM translational pause allows for the initiation of secA translation
YP_005235795.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_005235796.1	similar to Escherichia coli 7,8-dihydro-8-oxoguanine-triphosphatase; prefers dGTP; causes AT-GC transversions (AAC73210.1)
YP_005235800.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_005235801.1	catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate
YP_005235802.1	similar to Escherichia coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73217.1)
YP_005235803.1	similar to Escherichia coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73218.1)
YP_005235804.1	similar to Escherichia coli prepilin peptidase dependent protein (AAC73219.1)
YP_005235806.1	catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide
YP_005235807.1	AMPD protein (SW:AMPD_SALTY)
YP_005235808.1	involved in regulation of beta-lactamase; putative signaling protein
YP_005235812.1	similar to Escherichia coli aromatic amino acid transport protein (AAC73223.1); APC family
YP_005235814.1	activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex
YP_005235815.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_005235816.1	E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains
YP_005235817.1	E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_005235821.1	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate
YP_005235824.1	transports degraded pectin products into the bacterial cell
YP_005235826.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_005235827.1	similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC75777.1); LysR family
YP_005235828.1	S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine
YP_005235829.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_005235831.1	laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification
YP_005235832.1	similar to Escherichia coli glucose dehydrogenase (AAC73235.1)
YP_005235833.1	Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively
YP_005235834.1	catalyzes the interconversion of bicarbonate and carbon dioxide
YP_005235835.1	similar to Escherichia coli putative ATP-binding component of a transport system (AAC73238.1)
YP_005235836.1	putative ABC superfamily membrane protein
YP_005235837.1	LpfD protein precursor (SW:LPFD_SALTY)
YP_005235838.1	similar to Escherichia coli putative outer membrane protein (AAC76178.1)
YP_005235839.1	similar to Escherichia coli periplasmic chaperone, required for type 1 fimbriae (AAC77272.1)
YP_005235840.1	similar to Escherichia coli major type 1 subunit fimbrin; pilin (AAC77270.1)
YP_005235842.1	similar to Escherichia coli putative PTS enzyme II B component (AAC73240.1)
YP_005235844.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_005235845.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_005235847.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_005235848.1	catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP
YP_005235849.1	Polymerase that creates the 3' poly(A) tail found in some mRNA's
YP_005235850.1	this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu
YP_005235851.1	dnaK suppressor protein (SW:DKSA_SALTY); suppresses dnaK deletion
YP_005235852.1	Regulatory factor involved in maltose metabolism
YP_005235854.1	similar in sequence to the ATP-dependent RNA helicase HrpA
YP_005235857.1	bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell
YP_005235859.1	involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein
YP_005235860.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter
YP_005235861.1	Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores
YP_005235862.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_005235865.1	major fimbrial subunit StfA (gi|3747029)
YP_005235866.1	outer membrane usher protein StfC (gi|3747030)
YP_005235867.1	periplasmic fimbrial chaperone StfD (gi|3747031)
YP_005235868.1	minor fimbrial subunit StfE (gi|3747032)
YP_005235869.1	minor fimbrial subunit StfF (gi|3747033)
YP_005235870.1	minor fimbrial subunit StfG (gi|3747034); putative adhesin
YP_005235871.1	hypothetical 30.2 da protein in stfG 3'region precursor (SW:YADU_SALTY)
YP_005235872.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_005235874.1	Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation
YP_005235875.1	essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors
YP_005235877.1	solute binding component of the vitamin B12 transport system BtuCDF
YP_005235878.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_005235879.1	forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate
YP_005235880.1	protease Do; required at high temperature; degrades damaged proteins
YP_005235881.1	regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization
YP_005235882.1	similar to Escherichia coli putative structural protein (AAC73274.1)
YP_005235883.1	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway
YP_005235884.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_005235885.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_005235887.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_005235888.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_005235889.1	Catalyzes the phosphorylation of UMP to UDP
YP_005235890.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_005235891.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_005235893.1	catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate
YP_005235894.1	catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate
YP_005235896.1	part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins
YP_005235897.1	(SW:OMPH_SALTY); histone-like protein
YP_005235898.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_005235899.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_005235900.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_005235901.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_005235902.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_005235903.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_005235904.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_005235906.1	similar to Escherichia coli lysine decarboxylase 2; constitutive (AAC73297.1)
YP_005235908.1	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase
YP_005235909.1	Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination
YP_005235911.1	hypothetical 20.8 kDa protein in mesJ-cutF intergenic region (SW:YAEQ_SALTY)
YP_005235912.1	putative-tRNA hydrolase domain
YP_005235913.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_005235915.1	similar to Escherichia coli regulator in colanic acid synthesis; interacts with RcsB (AAC73307.1); overexpression confers mucoid phenotype, increases capsule synthesis
YP_005235916.1	similar to Escherichia coli putative lipoprotein (AAC73308.1)
YP_005235917.1	part of the MetNIQ methionine uptake system
YP_005235918.1	part of the metNIQ transport system for methionine
YP_005235919.1	Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate
YP_005235923.1	catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid
YP_005235924.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73313.1); LysR family
YP_005235925.1	similar to Escherichia coli putative transport protein (AAC74729.1); putatively for chloramphenicol
YP_005235927.1	similar to Escherichia coli putative biotin synthesis protein (AAC73315.1); involved in menaquinone/biotin biosynthesis
YP_005235928.1	catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or  cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall
YP_005235929.1	catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione
YP_005235931.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_005235932.1	3'-5' exonuclease of DNA polymerase III
YP_005235941.1	similar to Escherichia coli ATP-binding component of serine protease (AAC73969.1); similar to Yersinia clpB
YP_005235952.1	similar to Escherichia coli putative outer membrane protein (AAC76576.1); OmpA family
YP_005235962.1	similar to Escherichia coli RhsD protein in rhs element (AAC73599.1); similar to STM0292
YP_005235963.1	similar to Escherichia coli rhsE protein in rhs element (AAC74538.1); similar to C-terminus of STM0291
YP_005235972.1	similar to Escherichia coli putative chaperone (AAC76177.1)
YP_005235973.1	similar to Escherichia coli putative outer membrane protein; export function (AAC73634.1)
YP_005235977.1	SinR protein (SW:SINR_SALTY)
YP_005235981.1	similar to Shigella VirG protein
YP_005235983.1	similar to Escherichia coli putative amidase-type enzyme (AAC73323.1)
YP_005235984.1	functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA
YP_005235985.1	catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate
YP_005235986.1	similar to Escherichia coli putative amidotransferase (AAC73327.1)
YP_005235988.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_005235989.1	similar to release factor 1 and 2
YP_005235990.1	similar to Escherichia coli aminoacyl-histidine dipeptidase; peptidase D (AAC73341.1)
YP_005235991.1	catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively
YP_005235992.1	forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation
YP_005235993.1	involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS
YP_005235994.1	outer membrane pore protein E precursor (SW:PHOE_SALTY)
YP_005235996.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_005235997.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_005235998.1	similar to Escherichia coli IS3 putative transposase (AAC75150.1); contains a premature stop codon
YP_005236000.2	similar to Escherichia coli putative transport protein (AAC74668.1)
YP_005236001.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_005236002.1	similar to Escherichia coli 3-isopropylmalate isomerase subunit (AAC73182.1); dehydratase; subunit with LeuC
YP_005236003.1	similar to Escherichia coli putative isomerase (AAC74264.1); FAA
YP_005236005.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74869.1); LysR family
YP_005236008.1	similar to Escherichia coli periplasmic chaperone; required for type 1 fimbriae (AAC77272.1)
YP_005236010.1	similar to Escherichia coli outer membrane protein; export and assembly of type 1 fimbriae; interrupted (AAC77273.1)
YP_005236011.1	similar to Escherichia coli probable pilin chaperone PapD (AAC73251.1)
YP_005236012.1	similar to Escherichia coli major type 1 subunit fimbrin; pilin (AAC77270.1)
YP_005236016.1	putative diguanylate cyclase/phosphodiesterase domain 1
YP_005236020.1	similar to ail and ompX
YP_005236024.1	similar to Escherichia coli putative resistance protein (AAC73673.1)
YP_005236025.1	similar to Escherichia coli integral transmembrane protein; acridine resistance (AAC76298.1)
YP_005236026.1	similar to Escherichia coli acridine efflux pump (AAC73565.1)
YP_005236028.1	similar to Escherichia coli putative ATPase (AAC73586.1)
YP_005236029.1	similar to Escherichia coli putative transcriptional regulator (AAC73589.1)
YP_005236032.1	similar to Escherichia coli putative transport protein (AAC77235.1)
YP_005236033.1	type III restriction-modification system; methyltransferase (SW:T3MO_SALTY); restriction system
YP_005236034.1	type III restriction-modification system enzyme (SW:T3RE_SALTY); DNA helicase
YP_005236038.1	similar to Escherichia coli probable third cytochrome oxidase, subunit I (AAC74063.1)
YP_005236039.1	similar to Escherichia coli cytochrome d terminal oxidase polypeptide subunit II (AAC73828.1)
YP_005236041.1	putative XylS/AraC transcriptional activator (gi|3094022); AraC family
YP_005236042.1	ferrioxamine B receptor precursor (SW:FOXA_SALTY)
YP_005236043.1	similar to Escherichia coli putative cytochrome subunit of dehydrogenase (AAC73431.1)
YP_005236045.1	propionate catabolism operon regulatory protein (SW:PRPR_SALTY); EBP family
YP_005236047.1	catalyzes the formation of pyruvate and succinate from 2-methylisocitrate
YP_005236048.1	catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity
YP_005236049.1	functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C
YP_005236050.1	catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent
YP_005236051.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_005236054.1	similar to Escherichia coli putative flagellin structural protein (AAC73477.1); similar to 3rd module of ATP-binding components of transporters
YP_005236056.1	similar to Escherichia coli putative enzyme (AAC73479.1)
YP_005236059.1	in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope
YP_005236064.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_005236066.1	similar to Escherichia coli putative transport protein (AAC74137.1)
YP_005236070.1	similar to Escherichia coli protein induced by phosphate starvation (AAC73487.1)
YP_005236071.1	catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis
YP_005236072.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_005236075.1	type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_005236077.1	similar to Escherichia coli protein of aro operon; regulated by aroR (AAC73493.1)
YP_005236079.1	Required for efficient pilin antigenic variation
YP_005236081.1	catalyzes phosphorylation of fructose; cytosolic enzyme
YP_005236082.1	member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers
YP_005236083.1	with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity
YP_005236084.1	with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity
YP_005236086.1	two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB
YP_005236087.1	membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB
YP_005236089.1	branched-chain amino acid transport system II carrier protein (SW:BRNQ_SALTY); LIVCS family; LIV-II
YP_005236090.1	cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation
YP_005236091.1	similar to Escherichia coli maltodextrin glucosidase (AAC73506.1)
YP_005236092.1	similar to Escherichia coli alkyl hydroperoxide reductase C22 subunit; detoxification of hydroperoxides (AAC73706.1)
YP_005236093.1	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
YP_005236094.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_005236096.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_005236097.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_005236098.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_005236099.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_005236102.1	hypothetical 12.6 kDa protein in secF-tsx intergenic region (SW:YAJD_SALTY)
YP_005236104.1	nucleoside-specific channel-forming protein TSX precursor (SW:TSX_SALTY); receptor of phage T6 and colicin K
YP_005236108.1	riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil
YP_005236109.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_005236110.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_005236111.1	catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP
YP_005236112.1	hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate
YP_005236114.1	similar to Escherichia coli putative NAD(P)H-dependent xylose reductase (AAC73522.1); K+ channel protein
YP_005236115.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_005236116.1	similar to Escherichia coli geranyltranstransferase; farnesyldiphosphate synthase (AAC73524.1)
YP_005236117.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_005236118.1	Required for the synthesis of the thiazole moiety
YP_005236119.1	probable membrane component of 2-aminoethylphosphonate transporter PhnV  (gi|11354255)
YP_005236120.1	probable membrane component of 2-aminoethylphosphonate transporter PhnU  (gi|11354254)
YP_005236121.1	probable ATPase component of 2-aminoethylphosphonate transporter PhnT  (gi|11354253)
YP_005236122.1	probable periplasmic binding-protein of the2-aminoethylphosphonate transporter phnS (gi|11354256)
YP_005236123.1	probable repressor protein of GntR family PhnR (gi|11354257)
YP_005236125.1	catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate
YP_005236126.1	catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate
YP_005236127.1	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme (SW:THIJ_SALTY)
YP_005236128.1	ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis
YP_005236130.1	similar to Escherichia coli putative transport protein (AAC73530.1); MFS family
YP_005236132.1	TPR repeat
YP_005236133.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_005236134.1	similar to Escherichia coli cytochrome o ubiquinol oxidase subunit IV (AAC73532.1)
YP_005236135.1	similar to Escherichia coli cytochrome o ubiquinol oxidase subunit III (AAC73533.1)
YP_005236136.1	similar to Escherichia coli cytochrome o ubiquinol oxidase subunit I (AAC73534.1)
YP_005236137.1	similar to Escherichia coli cytochrome o ubiquinol oxidase subunit II (AAC73535.1)
YP_005236138.1	in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein
YP_005236139.1	similar to Escherichia coli putative polymerase/proteinase (AAC73537.1)
YP_005236141.1	positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress
YP_005236143.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_005236144.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_005236146.1	binds and unfolds substrates as part of the ClpXP protease
YP_005236147.1	similar to Escherichia coli ATP-dependent protease La; heat shock K-protein (AAC73542.1); cleaves RcsA and SulA; heat shock K-protein; DNA binding activity
YP_005236148.1	histone-like DNA-binding protein
YP_005236149.1	similar to Escherichia coli putative protease maturation protein (AAC73544.1)
YP_005236151.1	similar to DNA-binding proteins
YP_005236153.1	YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His
YP_005236156.1	similar to Escherichia coli cysteine synthase B; O-acetylserine sulfhydrolase B (AAC75474.1)
YP_005236157.1	similar to Escherichia coli putative LRP-like transcriptional regulator (AAC73550.1); AsnC family
YP_005236158.1	similar to Escherichia coli ATP-binding component of a transport system (AAC73551.1); putative ABC superfamily transporter
YP_005236159.1	similar to Escherichia coli putative ATP-binding component of a transport system (AAC73552.1); putative ABC superfamily
YP_005236160.1	indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.
YP_005236161.1	similar to Escherichia coli probable ammonium transporter (AAC73554.1); Amt family
YP_005236162.1	similar to Escherichia coli acyl-CoA thioesterase II (AAC73555.1)
YP_005236163.1	similar to Escherichia coli glycoprotein/polysaccharide metabolism (AAC73556.1)
YP_005236165.1	putative diguanylate cyclase/phosphodiesterase domain 2
YP_005236166.1	RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_005236167.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif
YP_005236169.1	similar to Escherichia coli putative transferase (AAC73561.1)
YP_005236170.1	with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins
YP_005236172.1	similar to Escherichia coli acridine efflux pump (AAC73564.1); RND family
YP_005236173.1	similar to Escherichia coli acridine efflux pump (AAC73565.1)
YP_005236174.1	regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine
YP_005236176.1	small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS
YP_005236179.1	PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks
YP_005236180.1	similar to Escherichia coli putative gene 58 (AAC73570.1)
YP_005236181.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_005236182.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_005236184.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_005236185.1	molecular chaperone
YP_005236187.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_005236189.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_005236190.2	similar to Escherichia coli putative lipase (AAC73578.1)
YP_005236191.1	similar to Escherichia coli inosine-guanosine kinase (AAC73579.1)
YP_005236192.1	YbaL; member of the CPA-2 family of antiporters; uncharacterized protein
YP_005236194.1	similar to Escherichia coli fosmidomycin resistance protein (AAC73581.1); MFS family
YP_005236195.1	catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides
YP_005236196.1	protein YbaK (SW:YBAK_SALTY)
YP_005236197.1	similar to Escherichia coli putative ligase (AAC73584.1)
YP_005236199.1	similar to Escherichia coli putative ATPase (AAC73586.1)
YP_005236200.1	activator of copper-responsive regulon genes
YP_005236201.1	implicated in regulation of membrane protease activity
YP_005236202.1	similar to Escherichia coli putative protease (AAC73591.1)
YP_005236203.1	similar to Escherichia coli putative ATP-binding component of a transport system (AAC73592.1)
YP_005236204.1	similar to Escherichia coli putative metal resistance protein (AAC73593.1); YbbM family
YP_005236205.1	similar to Escherichia coli putative thioredoxin-like protein (AAC73594.1)
YP_005236206.1	similar to Escherichia coli putative oxidoreductase (AAC73595.1)
YP_005236207.1	similar to Escherichia coli acyl-CoA thioesterase I; also functions as protease I (AAC73596.1); lysophospholipaseL(I)
YP_005236208.1	similar to Escherichia coli putative ATP-binding component of a transport system (AAC73597.1); putative ABC superfamily ATP-binding protein
YP_005236209.1	similar to Escherichia coli putative oxidoreductase (AAC73598.1)
YP_005236213.1	similar to Escherichia coli putative lipoprotein (AAC73308.1); cell division protein
YP_005236214.1	similar to Escherichia coli ATP-binding component of a transporter (AAC73310.1); cell division protein
YP_005236215.1	similar to Escherichia coli putative transport system permease protein (AAC73309.1); binding-protein-dependent
YP_005236216.1	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
YP_005236217.1	activator of the allDC-ylbA operon involved in allantoin utilization
YP_005236218.1	catalyzes the formation of glyoxylate from (S)-ureidoglycolate
YP_005236219.1	regulates operons involved in the utilization of allantoin
YP_005236220.1	catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate
YP_005236221.1	similar to Escherichia coli glyoxylate-induced protein (AAC73610.1)
YP_005236222.1	similar to Escherichia coli putative oxidoreductase (AAC73611.1)
YP_005236223.1	similar to Escherichia coli putative transport protein; cryptic; joins former yjiZ and yjjL (AAC77312.1)
YP_005236225.2	similar to Escherichia coli putative transport protein (AAC73613.1); NCS1 family
YP_005236226.1	Plays a crucial role on both purine and pyrimidine metabolism
YP_005236227.1	similar to Escherichia coli putative transport (AAC73615.1)
YP_005236230.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_005236231.1	similar to Escherichia coli putative malate dehydrogenase  (AAC73619.1)
YP_005236232.1	multicopy suppressor of dominant negative ftsH mutations
YP_005236234.1	similar to Escherichia coli putative carboxylase (AAC73622.1)
YP_005236235.1	forms a homodimer; may be used to synthesize carbomyl phosphate from ATP and carbamate
YP_005236236.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_005236237.1	Catalyzes a step in the de novo purine nucleotide biosynthetic pathway
YP_005236238.1	catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine
YP_005236239.1	similar to Escherichia coli peptidyl-prolyl cis-trans isomerase B; rotamase B (AAC73627.1)
YP_005236240.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_005236245.1	similar to Escherichia coli 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase (AAC73631.1)
YP_005236248.1	type-1 fimbrial protein; A chain precursor; type-1A pilin (SW:FM1A_SALTY); major type 1 subunit
YP_005236249.1	fimbrin-like protein FimI (SW:FIMI_SALTY)
YP_005236250.1	chaperone protein FimC precursor (SW:FIMC_SALTY); required for type 1 fimbriae
YP_005236251.1	outer membrane usher protein FimD precursor (SW:FIMD_SALTY)
YP_005236252.1	FIMH protein precursor (SW:FIMH_SALTY)
YP_005236253.1	fimbrial-like protein FimF precursor (SW:FIMF_SALTY)
YP_005236254.1	activates the production of the major fimbrae protein FimA
YP_005236255.1	fimbriae Y protein (SW:FIMY_SALTY)
YP_005236256.1	putative diguanylate cyclase/phosphodiesterase domain 0
YP_005236257.1	fimbriae W protein (SW:FIMW_SALTY)
YP_005236259.1	similar to Escherichia coli prophage DLP12 integrase (AAC73638.1)
YP_005236262.1	similar to Escherichia coli putative glycan biosynthesis enzyme (AAC75410.1)
YP_005236264.1	similar to Escherichia coli putative 2-component sensor protein (AAC73671.1)
YP_005236265.1	similar to Escherichia coli putative AraC-type regulatory protein (AAC73408.1); AraC/XylS family
YP_005236266.1	Involved in disulfide oxidoreductase activity and electron transport
YP_005236271.1	similar to Escherichia coli phenylalanine-specific transport system (AAC73677.1); APC family
YP_005236272.1	similar to Escherichia coli putative transport (AAC73678.1)
YP_005236274.1	outer membrane esterase (gi|2896133); N-acetyl phenylalanine beta-naphthyl esterase
YP_005236276.1	similar to Escherichia coli putative transport protein (AAC76396.1)
YP_005236277.1	similar to Escherichia coli L-glutamine/D-fructose-6-phosphate aminotransferase (AAC76752.1)
YP_005236278.1	similar to Escherichia coli PTS enzyme IID; mannose-specific (AAC74889.1)
YP_005236279.1	similar to Escherichia coli PTS enzyme IIC; mannose-specific (AAC74888.1)
YP_005236280.1	similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1)
YP_005236281.1	similar to Escherichia coli PTS enzyme IIAB; mannose-specific (AAC74887.1)
YP_005236282.1	catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive
YP_005236286.1	resistance against oxidative stress protein A (gi|9885772)
YP_005236288.1	ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity
YP_005236289.1	similar to Escherichia coli enterochelin synthetase component D (AAC73684.1); phoshpantetheinyltransferase
YP_005236290.1	Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space
YP_005236292.1	similar to Escherichia coli enterochelin esterase (AAC73686.1)
YP_005236294.1	with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin
YP_005236295.1	part of the ferric enterobactin transport system; necessary for enetrobactin uptake
YP_005236296.1	with FepBDE is involved in the transport of ferric enterobactin
YP_005236297.1	with FepBCD is involved in the transport of ferric enterobactin
YP_005236298.1	with FepBCG is involved in the transport of ferric enterobactin
YP_005236299.1	protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters
YP_005236300.1	with FepCDG is involved in the transport of ferric enterobactin
YP_005236301.1	synthesizes isochorismate acid from chorismate
YP_005236302.1	bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate
YP_005236303.1	similar to Escherichia coli 2,3-dihydro-2,3-dihydroxybenzoate synthetase; isochroismatase (AAC73696.1)
YP_005236304.1	catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin
YP_005236305.1	possibly involved in aromatic compounds catabolism; PaaI
YP_005236307.1	similar to Escherichia coli carbon starvation protein (AAC73699.1)
YP_005236309.1	member of the iron-containing alcohol dehydrogenase family; unknown function
YP_005236310.1	catalyzes the transfer of an amino moiety
YP_005236312.1	PAPS reductase/FAD synthetase
YP_005236313.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73704.1); LysR family
YP_005236314.1	Involved in disulfide bond formation
YP_005236315.1	with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate
YP_005236316.1	alkyl hydroperoxide reductase subunit F (SW:AHPF_SALTY); detoxification of hydroperoxides
YP_005236317.1	similar to Escherichia coli putative oxidoreductase component (AAC74663.1)
YP_005236318.1	similar to Escherichia coli putative oxidoreductase; major subunit (AAC74659.1)
YP_005236320.1	similar to Escherichia coli putative DMSO reductase anchor subunit (AAC74662.1)
YP_005236321.1	similar to UspA and related nucleotide-binding protein
YP_005236324.1	similar to Escherichia coli putative oxidoreductase (AAC73709.1)
YP_005236325.1	Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation
YP_005236326.1	similar to Escherichia coli RNase I; cleaves phosphodiester bond between any two nucleotides (AAC73712.1)
YP_005236327.1	similar to Escherichia coli putative membrane protein (AAC73713.1); DASS family
YP_005236328.1	catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA
YP_005236329.1	2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate
YP_005236330.1	similar to Escherichia coli citrate lyase alpha chain (AAC73716.1)
YP_005236331.1	similar to Escherichia coli citrate lyase beta chain; acyl lyase subunit (AAC73717.1)
YP_005236332.1	acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate
YP_005236333.1	similar to Escherichia coli citrate lyase synthetase; citrate (pro-3S)-lyase ligase (AAC73719.1)
YP_005236335.1	similar to Escherichia coli putative sensor-type protein (AAC73720.1); in two-component regulatory system with DpiA; regulation of cit operon and plasmid inheritance genes
YP_005236336.1	regulates the expression of citAB in citrate fermentation
YP_005236337.1	responsible for the transport of C4-dicarboxylates during anaerobic growth
YP_005236339.1	PagP (gi|3789781)
YP_005236340.1	member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator
YP_005236341.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_005236342.1	similar to Escherichia coli putative amidase (AAC73727.1)
YP_005236344.1	TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_005236345.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_005236347.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73730.1); LysR family
YP_005236349.1	lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism
YP_005236352.1	penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors
YP_005236354.1	similar to Escherichia coli minor lipoprotein (AAC73734.1)
YP_005236355.1	similar to Escherichia coli rod shape-determining membrane protein; sensitivity to radiation and drugs (AAC73735.1); cell elongation in exponential phase
YP_005236356.1	similar to Escherichia coli cell elongation e phase protein; peptidoglycan synthetase; penicillin-binding protein 2 (AAC73736.1)
YP_005236357.1	enzyme from Escherichia coli has not been shown to exhibit methyltransferase activity; crystal structure shows homodimer
YP_005236358.1	similar to putative ACR plant Iojap protein
YP_005236359.1	alpha-ribazole-5'-phosphate phosphatase (SW:COBC_SALTY); cobalamin synthesis
YP_005236360.1	cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase
YP_005236361.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_005236362.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_005236363.1	rare lipoprotein B; involved in the assembly of LPS in the outer membrane
YP_005236365.1	similar to Escherichia coli altronate hydrolase N-terminus (AAC76126.1)
YP_005236366.1	similar to Escherichia coli putative hydrolase C-terminus (AAC76162.1)
YP_005236367.1	transports degraded pectin products into the bacterial cell
YP_005236368.1	similar to Escherichia coli response regulator of ato; ornithine decarboxylase antizyme; sensor ATOS (AAC75280.1)
YP_005236369.1	similar to Escherichia coli putative alpha helical protein (AAC73744.1)
YP_005236370.1	TPR repeat
YP_005236372.1	similar to Escherichia coli putative enzyme of polynucleotide modification (AAC73747.1); DnaJ family
YP_005236373.1	DnaJ family
YP_005236374.1	similar to Escherichia coli putative DnaK protein (AAC73751.1); similar to Hsp70 in Hsc66 subfamily
YP_005236376.1	Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific
YP_005236377.1	similar to Escherichia coli ATP-binding protein of glutamate/aspartate transport system (AAC73753.1); ABC superfamily ATP-binding protein
YP_005236378.1	similar to Escherichia coli glutamate/aspartate transport system permease (AAC73754.1); ABC superfamily membrane protein
YP_005236379.1	similar to Escherichia coli glutamate/aspartate transport system permease (AAC73755.1); ABC superfamily membrane protein
YP_005236380.1	similar to Escherichia coli putative periplasmic binding transport protein (AAC73756.1); ABC superfamily binding protein
YP_005236382.1	Transfers the fatty acyl group on membrane lipoproteins
YP_005236383.1	similar to Escherichia coli putative transport protein (AAC73759.1); contains putative CBS domain
YP_005236385.1	hypothetical protein in cutE-corC intergenic region (SW:YBEY_SALTY)
YP_005236386.1	similar to Escherichia coli putative ATP-binding protein in pho regulon (AAC73761.1)
YP_005236388.1	methylthiolation of isopentenylated A37 derivatives in rRNA
YP_005236389.1	catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q
YP_005236392.1	functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP
YP_005236393.1	similar to Escherichia coli N-acetylglucosamine metabolism (AAC73769.1)
YP_005236394.1	similar to Escherichia coli transcriptional repressor of nag; N-acetylglucosamine operon (AAC73770.1); NagC/XylR family
YP_005236395.1	catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate
YP_005236396.1	catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate
YP_005236398.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_005236399.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_005236404.1	citrate-proton symporter (citrate transporter). (SW:CIT1_SALTY)
YP_005236405.1	citrate utilization protein B (SW:CIT2_SALTY)
YP_005236406.1	catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica
YP_005236407.1	similar to Escherichia coli nitrogen assimilation control protein (AAC75050.1); LysR family
YP_005236408.1	negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer
YP_005236410.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_005236411.1	LexA-regulated
YP_005236414.1	negative modulator of the initiation of chromosome replication
YP_005236415.1	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate
YP_005236417.1	catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system
YP_005236418.1	similar to Escherichia coli ornithine decarboxylase isozyme; inducible (AAC73787.1)
YP_005236421.1	response regulator in  two-component regulatory system with  KdpD; regulates the kdp operon involved in potassium transport
YP_005236422.1	sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein
YP_005236423.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex
YP_005236424.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_005236425.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_005236428.1	UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent
YP_005236429.2	similar to Escherichia coli putative transport protein (AAC73803.1)
YP_005236431.1	similar to Escherichia coli putative carboxylase (AAC73805.1)
YP_005236432.1	similar to Escherichia coli putative carboxylase (AAC73806.1)
YP_005236433.1	similar to Escherichia coli putative lactam utilization protein (AAC73807.1)
YP_005236435.1	similar to Escherichia coli recombinase involved in phase variation; regulator for fimA (AAC77268.1)
YP_005236438.1	similar to Escherichia coli UDP-galactopyranose mutase (AAC75097.1)
YP_005236440.1	similar to Escherichia coli putative colanic acid biosynthesis glycosyl transferase (AAC75105.1)
YP_005236442.1	similar to Escherichia coli ATP-binding component of putrescine transport system (AAC73942.1)
YP_005236443.1	cell wall biogenesis
YP_005236444.1	cell wall biogenesis
YP_005236447.1	5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity
YP_005236448.1	similar to Escherichia coli putative transport protein (AAC73809.1)
YP_005236449.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_005236451.1	similar to Escherichia coli succinate dehydrogenase; cytochrome b556 (AAC73815.1)
YP_005236452.1	similar to Escherichia coli succinate dehydrogenase; hydrophobic subunit (AAC73816.1)
YP_005236453.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_005236454.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_005236455.1	kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth
YP_005236456.1	component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA
YP_005236457.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_005236458.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_005236461.1	similar to Escherichia coli cytochrome d terminal oxidase; polypeptide subunit I (AAC73827.1)
YP_005236462.1	similar to Escherichia coli cytochrome d terminal oxidase polypeptide subunit II (AAC73828.1)
YP_005236466.1	catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid  metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components
YP_005236467.1	membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins
YP_005236468.1	membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins
YP_005236469.1	inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins
YP_005236470.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_005236471.1	similar to Escherichia coli peptidoglycan-associated lipoprotein (AAC73835.1); tol protein required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm
YP_005236475.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_005236476.1	PNUC protein (SW:PNUC_SALTY); NMN family
YP_005236477.1	involved in zinc efflux across the cytoplasmic membrane
YP_005236478.1	similar to Escherichia coli putative homeobox protein (AAC73840.1)
YP_005236479.2	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_005236480.1	similar to Escherichia coli fumarase B; fumarate hydratase class I; anaerobic isozyme (AAC77083.1)
YP_005236481.1	Catalyzes the reversible hydration of fumaric acid to yield I-malic acid
YP_005236482.1	similar to Escherichia coli cyn operon positive regulator (AAC73441.1); LysR family
YP_005236483.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC77283.1); LysR family
YP_005236484.1	similar to Escherichia coli putative transport protein (AAC75352.1)
YP_005236485.1	catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide
YP_005236486.1	oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY)
YP_005236488.1	similar to Escherichia coli ferric enterobactin transport (AAC73691.1)
YP_005236489.1	similar to Escherichia coli ATP-binding component of ferric enterobactin transport (AAC73689.1)
YP_005236490.1	catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_005236492.1	catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose
YP_005236493.1	catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism
YP_005236494.1	catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P
YP_005236495.1	UDP-glucose 4-epimerase (SW:GALE_SALTY)
YP_005236498.1	contains 2 ATP-binding cassettes; involved in the transport of molybdenum
YP_005236499.1	represses the modABCD operon and activates the moaABCD and napFDAGHBC operons
YP_005236501.1	with ModCB is involved in the high-affinity transport of molybdate
YP_005236502.1	part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE
YP_005236503.1	Part of the ABC transporter complex modABC involved in molybdenum import
YP_005236504.1	YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily
YP_005236505.1	catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate
YP_005236506.1	outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family
YP_005236507.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_005236508.1	catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate
YP_005236509.1	similar to Escherichia coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1)
YP_005236510.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_005236511.1	YbhB; similar to rat and human kinase inhibitory proteins
YP_005236512.1	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate
YP_005236513.1	similar to Escherichia coli biotin synthesis (AAC73862.1)
YP_005236514.1	catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine
YP_005236515.1	putative methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth
YP_005236516.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_005236519.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_005236521.1	leucine-rich repeat protein SlrP (gi|5107020); secreted by SPI-1; type III secretion
YP_005236522.1	similar to Escherichia coli putative structural protein (AAC73867.1)
YP_005236523.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_005236524.1	similar to Escherichia coli molybdopterin biosynthetic protein B (AAC73869.1)
YP_005236525.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_005236526.1	catalyzes the conversion of molybdopterin precursor Z into molybdopterin
YP_005236527.1	catalyzes the conversion of molybdopterin precursor Z into molybdopterin
YP_005236530.1	transposase for insertion sequence element IS200 (SW:T200_SALTY)
YP_005236535.1	similar to Escherichia coli putative synthetase (AAC73876.1); CL synthase
YP_005236538.1	putative ABC superfamily membrane protein
YP_005236540.1	putative ABC superfamily membrane protein
YP_005236541.1	similar to Escherichia coli putative ATP-binding component of a transport system (AAC73881.1)
YP_005236542.1	similar to Escherichia coli putative membrane protein (AAC73882.1); predicted cation efflux pump
YP_005236543.1	similar to Escherichia coli putative transcriptional regulator (AAC73883.1); TetR/AcrR family
YP_005236544.1	this helicase is not essential cell growth
YP_005236546.1	helicase involved in DNA repair and perhaps also replication
YP_005236547.1	similar to Escherichia coli putative enzyme (AAC73887.1)
YP_005236550.1	putative DnaK suppressor protein
YP_005236553.1	similar to Escherichia coli putative transport protein (AAC73895.1)
YP_005236555.1	similar to ATP-binding component of ABC transporters
YP_005236556.1	similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine
YP_005236557.1	similar to periplasmic-binding component of ABC transporters
YP_005236559.1	binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage
YP_005236561.1	hypothetical protein in dps-ompX intergenic region (SW:YBIF_SALTY)
YP_005236564.1	OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains
YP_005236565.1	similar to Escherichia coli putative enzyme (AAC73902.1)
YP_005236568.1	Transcriptional regulator that represses the manganese transporter MntH when manganese is present
YP_005236569.1	putative di-/tricarboxylate transporter
YP_005236571.1	similar to Escherichia coli putative ATP-binding component of a transport system (AAC73907.1); contains duplicated ATPase domain
YP_005236572.1	C-terminus is similar to N-terminus of some pyridine nucleotide  transhydrogenase
YP_005236573.1	would extend upstream except for stop codon; putative N-terminally truncated hydrolase; HAD superfamily
YP_005236576.1	HAD superfamily
YP_005236577.1	similar to Escherichia coli putative formate acetyltransferase (AAC73910.1)
YP_005236578.1	similar to Escherichia coli putative pyruvate formate-lyase 2 activating enzyme (AAC73911.1)
YP_005236580.1	ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase
YP_005236581.1	is involved in the formation of active molybdenum cofactor and the chelation of molybdenum
YP_005236583.1	similar to Escherichia coli putative asparaginase (AAC73915.1)
YP_005236584.1	with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains
YP_005236585.1	similar to Escherichia coli putative transport protein (AAC73917.1)
YP_005236586.1	similar to Escherichia coli putative transport system permease protein (AAC73918.1)
YP_005236587.1	similar to Escherichia coli putative transport system permease protein (AAC73919.1)
YP_005236591.1	BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing
YP_005236595.1	similar to Escherichia coli probable flavoprotein subunit; carnitine metabolism (AAC73152.1)
YP_005236596.1	similar to Escherichia coli putative flavoprotein (AAC74768.1)
YP_005236597.1	similar to Escherichia coli putative oxidoreductase (AAC74765.1)
YP_005236599.1	similar to Escherichia coli flavoprotein; probable electron transport protein (AAC74769.1)
YP_005236600.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74667.1); LysR family
YP_005236603.1	similar to Escherichia coli putative transferase (AAC73925.1)
YP_005236604.1	penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains
YP_005236605.1	similar to Escherichia coli transcriptional repressor for deo operon, tsx, nupG (AAC73927.1); DeoR family
YP_005236607.1	similar to Escherichia coli proton motive force efflux pump (AAC73929.1)
YP_005236609.1	similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC73932.1)
YP_005236611.1	similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC73933.1); TetR/Acr family
YP_005236612.1	similar to Escherichia coli putative transport protein (AAC73934.1)
YP_005236614.1	functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase
YP_005236615.1	YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function
YP_005236616.1	NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds
YP_005236617.1	responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6
YP_005236618.1	similar to Escherichia coli putative sensory transduction regulator (AAC73940.1)
YP_005236619.1	similar to Escherichia coli periplasmic putrescine-binding protein; permease protein (AAC73941.1); ABC superfamily periplasmic protein
YP_005236620.1	part of the PotFGHI ATP-dependent putrescine transporter
YP_005236621.1	similar to Escherichia coli putrescine transport protein; permease (AAC73943.1); ABC superfamily membrane protein
YP_005236622.1	similar to Escherichia coli putrescine transport protein; permease (AAC73944.1); ABC superfamily membrane protein
YP_005236624.1	RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA
YP_005236626.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_005236627.1	similar to SgaT from Vibrio
YP_005236628.1	similar to Escherichia coli putative sulfatase (AAC76701.1)
YP_005236630.1	similar to Escherichia coli arginine 3rd transport system periplasmic binding protein (AAC73947.1); ABC superfamily binding protein
YP_005236631.1	with ArtPQJI acts to transport arginine across the inner membrane
YP_005236632.1	with ArtPMJI transports arginine across the inner membrane
YP_005236633.1	similar to Escherichia coli arginine 3rd transport system periplasmic binding protein (AAC73950.1); ABC superfamily binding protein
YP_005236634.1	With ArtMQJI transports arginine across the inner membrane
YP_005236635.1	induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS
YP_005236637.1	similar to Escherichia coli putative regulator (AAC73954.1)
YP_005236638.1	similar to Escherichia coli putative nucleotide di-P-sugar epimerase or dehydratase (AAC73955.1)
YP_005236639.1	similar to Escherichia coli putative dTDP-glucose enzyme (AAC73956.1)
YP_005236640.1	low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine
YP_005236641.1	catalyzes the formation of acetate from pyruvate
YP_005236642.1	similar to Escherichia coli putative enzyme (AAC73959.1); hcp gene product
YP_005236643.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_005236645.1	similar to Escherichia coli putative surface protein (AAC73961.1)
YP_005236647.1	similar to RecF protein
YP_005236648.1	similar to Escherichia coli putative enzyme (AAC73964.1)
YP_005236649.1	confers macrolide resistance via active drug efflux
YP_005236650.1	with MacA is involved in the export of macrolide
YP_005236653.1	similar to Escherichia coli cold shock protein CspA (AAC73967.1); stationary phase-induced
YP_005236654.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_005236655.1	ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates
YP_005236657.1	transposase for insertion sequence element IS200 (SW:T200_SALTY)
YP_005236659.1	similar to Escherichia coli IS150 putative transposase (AAC76582.1)
YP_005236662.1	similar to slsA in STM (gi|4324613); similar to STM3761
YP_005236664.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73313.1); LysR family
YP_005236665.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_005236667.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_005236668.1	in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c
YP_005236669.1	in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c
YP_005236670.1	catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding
YP_005236673.1	mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system
YP_005236674.1	DNA-binding membrane protein required for chromosome resolution and partitioning
YP_005236675.1	participates with LolB in the incorporation of lipoprotein into the outer membrane
YP_005236676.1	similar to Escherichia coli putative polynucleotide enzyme (AAC73978.1)
YP_005236678.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_005236679.1	similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit A (AAC73980.1)
YP_005236680.1	similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1)
YP_005236681.1	similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit C (AAC73982.1)
YP_005236684.1	similar to Escherichia coli putative transport (AAC73984.1); MFS family
YP_005236685.1	similar to Escherichia coli putative transport (AAC73985.1); APC family
YP_005236686.1	activates pyruvate formate-lyase 1 under anaerobic conditions
YP_005236689.1	similar to Escherichia coli formate acetyltransferase 1 (AAC73989.1); induced anaerobically
YP_005236690.2	similar to Escherichia coli probable formate transporter; formate channel 1 (AAC73990.1); FNT family
YP_005236695.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_005236696.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_005236697.1	similar to Escherichia coli putative heat shock protein (AAC73995.1); has chaperone function
YP_005236699.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_005236700.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_005236701.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_005236703.1	involved in the transport of lipid A across the inner membrane
YP_005236704.1	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_005236707.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_005236711.1	involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA
YP_005236712.1	acts with MukB and MukE to condense the chromosome and allow for segregation during cell division
YP_005236713.1	acts with MukB and MukF to condense the chromosome and allow for segregation during cell division
YP_005236714.1	SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects
YP_005236715.1	similar to Escherichia coli putative amidase (AAC74011.1)
YP_005236718.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_005236720.1	outer membrane protein F precursor; porin; (SW:OMPF_SALTY)
YP_005236722.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_005236724.1	similar to Escherichia coli regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system (AAC73975.1)
YP_005236726.1	catalyzes the formation of pyruvate from 2,3-diaminopropionate
YP_005236728.1	similar to Escherichia coli inner membrane transport protein (AAC73118.1); Lrp family
YP_005236729.1	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate
YP_005236730.1	similar to Escherichia coli putative transposase (AAC74651.1)
YP_005236733.1	hypothetical protein AAC26069.1 (gi|7467267)
YP_005236734.1	similar to exodeoxyribonuclease VIII (gi|7467238)
YP_005236738.1	probable regulatory protein (gi|7467281)
YP_005236740.1	probable regulatory protein (gi|7467282)
YP_005236741.1	probable replication protein (gi|7467283)
YP_005236742.1	acts to load the DnaB helicase onto the intiation site durning DNA replication
YP_005236752.1	DnaJ family
YP_005236758.1	similar to Escherichia coli bacteriophage lambda lysozyme (AAC73656.1)
YP_005236759.1	bacteriophage ES18 gp15 protein (gi|1143595)
YP_005236763.2	similar to Escherichia coli ATP-dependent proteolytic subunit of ClpA-ClpP serine protease; heat shock protein F21.5 (AAC73540.1)
YP_005236771.1	similar to lambda phage H tail component (gi|2232364)
YP_005236772.1	similar to lambda phage M tail component (gi|2232363)
YP_005236773.1	similar to OmpX (gi|2232362)
YP_005236774.1	superoxide dismutase CuZn precursor (SW:SODC_SALTY); important virulence function; implicated in defence against macrophage killing
YP_005236775.1	similar to lambda phage L tail component (gi|2232360)
YP_005236778.1	similar to phage lambda protein J
YP_005236780.1	similar to Escherichia coli putative membrane protein (AAC74454.1)
YP_005236781.1	similar to tail fiber assembly protein (gi|8927433)
YP_005236783.1	secreted effector I (gi|8927434); secreted by SPI-2; colocalizes with host polymerizing actin cytoskeleton
YP_005236788.2	similar to Escherichia coli aminopeptidase N (AAC74018.1)
YP_005236789.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_005236793.1	catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA
YP_005236794.1	Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth
YP_005236795.1	similar to Escherichia coli paraquat-inducible protein A (AAC74036.1)
YP_005236796.1	similar to Escherichia coli paraquat-inducible protein B (AAC74037.1)
YP_005236799.1	similar to Escherichia coli ribosome modulation factor (AAC74039.1); involved in dimerization of 70S ribosomes
YP_005236800.1	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP
YP_005236801.1	similar to Escherichia coli putative ATP-dependent protease (AAC74041.1)
YP_005236802.1	similar to Escherichia coli putative dehydrogenase (AAC74042.1)
YP_005236803.1	OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d
YP_005236804.1	suppressor of lon (SW:SULA_SALTY); inhibitor of cell division and FtsZ ring formation upon DNA damage/inhibition; HslVU and Lon involved in its turnover
YP_005236807.1	efflux PET family
YP_005236809.1	catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand
YP_005236810.1	catalyzes the formation of methylglyoxal from glycerone phosphate
YP_005236814.2	similar to Escherichia coli putative oxidoreductase (AAC74053.1)
YP_005236816.1	similar to Escherichia coli putative AraC-type regulatory protein (AAC73647.1); AraC family
YP_005236818.1	Part of a sulfur-relay system, TusBCD, required for 2-thiolation of 5-methylaminomethyl-2-thiouridine at tRNA wobble positions
YP_005236819.1	similar to Escherichia coli putative carrier/transport protein (AAC74056.1); TegT family
YP_005236820.2	similar to Gifsy prophage protein GtgA; GogA (STM1026)
YP_005236821.1	pathogenicity island-encoded protein B; similar to STM2780; secreted by SPI-2; type III secretion; localizes to Salmonella-containing vacuole and host cell membranes
YP_005236824.1	similar to ipgE of Shigella; invasion gene E protein (gi|2582386); similar to type III secretion chaperones SigE and CesT
YP_005236825.1	SigD; Salmonella outer protein B; similar to ipgD of Shigella; invasion gene D protein (gi|2582385); secreted by SPI-1; type III secretion
YP_005236828.1	similar to dipeptidase A
YP_005236829.1	histidine kinase; similar to Escherichia coli putative 2-component sensor protein (AAC75034.1)
YP_005236830.1	induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced
YP_005236831.1	putative periplasmic protein
YP_005236838.1	similar to Escherichia coli putative isomerase (AAC74264.1)
YP_005236839.1	similar to Escherichia coli aldehyde dehydrogenase; prefers NADP over NAD (AAC74382.1)
YP_005236843.1	similar to Escherichia coli 2-keto-4-pentenoate hydratase (AAC73453.1)
YP_005236845.1	similar to Escherichia coli putative transport protein (AAC75306.1)
YP_005236846.1	similar to Escherichia coli putative AraC-type regulatory protein (AAC74766.1)
YP_005236849.1	RssC (gi|12004175)
YP_005236851.1	with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA
YP_005236852.1	functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock
YP_005236854.1	suppressor for copper-sensitivity A (gi|2327003); putative copper binding protein
YP_005236855.1	suppressor for copper-sensitivity B (gi|2327004); suppression of copper sensitivity
YP_005236856.1	suppressor for copper-sensitivity C (gi|2327005); suppression of copper sensitivity
YP_005236857.1	suppressor for copper-sensitivity D (gi|2327006); suppression of copper sensitivity
YP_005236858.1	glucose-1-phosphatase precursor (SW:AGP_SALTY)
YP_005236860.1	stationary phase protein that binds TrpR repressor
YP_005236863.1	similar to Escherichia coli putative tet operon regulator (AAC74098.1); TetR/AcrR family
YP_005236867.1	sodium/proline symporter proline permease (SW:PUTP_SALTY); SSS family
YP_005236872.1	similar to Escherichia coli putative cotransporter (AAC76702.1)
YP_005236875.1	Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate
YP_005236880.1	similar to Escherichia coli putative transport protein (AAC77235.1)
YP_005236881.2	similar to Escherichia coli putative dehydrogenase (AAC77236.1)
YP_005236883.1	similar to Escherichia coli putative dehydrogenase (AAC74117.1)
YP_005236884.1	similar to hydrolases of the PHP family
YP_005236885.1	similar to Escherichia coli putative oxidoreductase component (AAC74119.1)
YP_005236886.1	hypothetical protein in phoH-csgG intergenic region (SW:YCDZ_SALTY)
YP_005236887.1	curli production assembly/transport component CsgG precursor (SW:CSGG_SALTY)
YP_005236888.1	nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex
YP_005236889.1	chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex
YP_005236890.1	activates the csgBA and csgDEFG operons involved in biofilm formation
YP_005236893.1	CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface
YP_005236894.1	major curlin subunit precursor; fimbrin SEF17 (SW:CSGA_SALTY); coiled surface structures; cryptic
YP_005236895.1	involved in autoagglutination of curliated cells; not involved in production of curli fibers
YP_005236896.1	hypothetical protein in csgC-mdoG intergenic region precursor (SW:YMDA_SALTY)
YP_005236897.1	similar to Escherichia coli putative polyprotein (AAC74129.1); putative ACR related to the C-terminal domain of histone macroH2A1
YP_005236898.1	similar to Escherichia coli putative synthase (AAC74130.1)
YP_005236899.1	required for the transfer of succinyl residues to the glucan backbone
YP_005236901.1	involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan
YP_005236902.1	necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space
YP_005236904.1	similar to Escherichia coli acidic protein; suppresses mutants lacking function of protein export (AAC74135.1)
YP_005236905.1	Confers resistance to fosfomycin and deoxycholate
YP_005236907.1	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
YP_005236910.1	similar to Escherichia coli putative cytochrome (AAC74141.1)
YP_005236913.1	catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids
YP_005236914.1	BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing
YP_005236915.1	similar to Escherichia coli damage-inducible protein I (AAC74145.1); inhibits UmuD processing
YP_005236916.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_005236917.1	hypothetical protein in pyrC 3'region (SW:YCEB_SALTY)
YP_005236918.1	cofactor involved in the reduction of disulfides
YP_005236919.1	Confers resistance to norfloxacin and enoxacin
YP_005236920.1	similar to Escherichia coli acetylase; acetylates N-terminal alanine of 30S ribosomal subunit protein S5 (AAC74150.1)
YP_005236922.1	virulence factor MviM (SW:MVIM_SALTY)
YP_005236924.1	virulence factor MviN (SW:MVIN_SALTY)
YP_005236925.1	flagella synthesis protein FlgN (SW:FLGN_SALTY)
YP_005236926.1	regulates the flagellar specific sigma28 transcription factor
YP_005236927.1	required for the assembly of the flagellar basal body P-ring
YP_005236929.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella
YP_005236930.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_005236931.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production
YP_005236932.1	the hook connects flagellar basal body to the flagellar filament
YP_005236933.1	FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod
YP_005236934.1	makes up the distal portion of the flagellar basal body rod
YP_005236935.1	part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod
YP_005236936.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_005236937.1	Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space
YP_005236938.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_005236939.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes
YP_005236941.1	bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase
YP_005236942.2	catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA
YP_005236945.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_005236946.1	hypothetical protein in rne-rpmF intergenic region (G30K) (SW:YCED_SALTY)
YP_005236947.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_005236948.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_005236949.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_005236950.1	malonyl coA-acyl carrier protein transacylase (SW:FABD_SALTY)
YP_005236951.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_005236952.1	carries the fatty acid chain in fatty acid biosynthesis
YP_005236953.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_005236954.1	catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate
YP_005236955.1	similar to Escherichia coli putative thymidylate kinase  (AAC74181.1)
YP_005236956.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_005236957.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_005236960.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_005236961.1	similar to Escherichia coli outer membrane receptor for ferric iron uptake (AAC74186.1); receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid uptake
YP_005236965.1	catalyzes the phosphorylation of thiamine to thiamine phosphate
YP_005236966.1	hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides
YP_005236968.1	similar to Escherichia coli respiratory NADH dehydrogenase (AAC74193.1); cupric reductase
YP_005236970.1	TetR/AcrR family
YP_005236974.1	similar to Escherichia coli transcription-repair coupling factor; mutation frequency decline (AAC74198.1); results in preferential repair of transcribed DNA
YP_005236975.2	part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane
YP_005236976.1	outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone
YP_005236977.1	part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane
YP_005236978.1	catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine
YP_005236979.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_005236980.1	can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate
YP_005236981.1	can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component
YP_005236983.1	translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isoprenoid addition of protein geranylgeranyl transferase I; also modified by S-acylation
YP_005236985.1	can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component
YP_005236986.1	functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase
YP_005236987.1	catalyzes the release of the N-terminal amino acid from a tripeptide
YP_005236988.1	transposase for insertion sequence element IS200 (SW:T200_SALTY)
YP_005236990.1	virulence sensor protein PhoQ (SW:PHOQ_SALTY); in two-component regulatory system with PhoP; ligand is Mg+
YP_005236991.1	response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress
YP_005236992.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_005236993.1	HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis
YP_005236994.1	Enables the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs
YP_005236995.1	similar to Escherichia coli putative phosphohydrolase (AAC74218.1)
YP_005236998.1	Converts isocitrate to alpha ketoglutarate
YP_005237001.1	similar to Salmonella enterica subsp. enterica serovar  Newport
YP_005237002.1	similar to hypothetical protein SPAB_02272 [Salmonella  enterica subsp. enterica serovar Paratyphi B str. SPB7]
YP_005237003.2	similar to hypothetical protein SPAB_02271 [Salmonella  enterica subsp. enterica serovar Paratyphi B str. SPB7]
YP_005237007.1	similar to hypothetical protein SPAB_02195 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7]
YP_005237008.1	similar to hypothetical protein STM2629 [Phage Gifsy-1]
YP_005237009.1	similar to hypothetical protein Sententeric_23977 [Salmonella  enterica subsp. enterica serovar Javiana str. GA_MM04042433]
YP_005237010.1	similar to ATPase domain protein [Geobacter lovleyi SZ]
YP_005237012.2	similar to hypothetical protein Sententer_01000067_0100027560 [Salmonella enterica subsp. enterica serovar 4,5,12:i:- str. CVM23701]
YP_005237013.1	similar to Gifsy-1 prophage cI protein
YP_005237016.1	similar to hypothetical protein Salmentericaenterica_07884  [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066]
YP_005237018.1	similar to hypothetical protein STY1027 [Salmonella enterica subsp. enterica serovar Typhi str. CT18]
YP_005237019.1	similar to hypothetical protein UTI89_C1271 [Escherichia  coli UTI89]
YP_005237024.1	similar to hypothetical protein Salentericaenterica_14861  [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537]
YP_005237025.1	similar to [Salmonella enterica subsp. enterica serovar Newport str. SL317]
YP_005237029.1	similar to hypothetical protein SNSL317_A4459 [Salmonella enterica subsp. enterica serovar Newport str. SL317]
YP_005237030.1	similar to hypothetical protein Sententerica_21953 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191]
YP_005237031.1	similar to hypothetical protein Sententerica_21948 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191]
YP_005237036.1	similar to hypothetical protein STM2610 [Phage Gifsy-1]
YP_005237057.1	similar to conserved hypothetical prophage protein [Phage Gifsy-2]
YP_005237064.1	similar to hypothetical protein SPAB_02140 [Salmonella  enterica subsp. enterica serovar Paratyphi B str. SPB7]
YP_005237070.1	probable lipoprotein EnvF precursor (SW:ENVF_SALTY)
YP_005237071.1	virulence protein MsgA (SW:MSGA_SALTY); reduced mouse virulence; similar to STM2231 and STM2244
YP_005237072.1	probable lipoprotein EnvE precursor (SW:ENVE_SALTY)
YP_005237074.1	cold shock-like protein CspH (SW:CSPH_SALTY)
YP_005237076.1	(SW:PAGD_SALTY); PhoP regulated protein
YP_005237079.1	(SW:PAGC_SALTY); PhoP regulated; reduced macrophage survival
YP_005237081.1	PliC; periplasmic lysozyme inhibitor of c-type lysozyme
YP_005237085.1	similar to Escherichia coli small heat shock protein (AAC76710.1)
YP_005237088.1	similar to Escherichia coli putative cytochrome (AAC75040.1)
YP_005237091.1	putative substrate-binding protein (gi|2337942)
YP_005237092.1	putative transmembrane protein (gi|2337943)
YP_005237093.1	putative transmembrane protein (gi|2337944)
YP_005237094.1	putative ATPase (gi|2337945); contain duplicated ATPase domain
YP_005237095.1	putative ATPase (gi|2337946); contains duplicated ATPase domain
YP_005237098.1	similar to C-terminus of adhesion lipoprotein
YP_005237100.1	streptomycin 3'-adenyltransferase
YP_005237101.1	contains CheY-like receiver domain and HTH DNA-binding domain
YP_005237102.1	similar to Escherichia coli putative transcriptional regulator (AAC74246.1)
YP_005237106.1	catalyzes the interconversion of chorismate to prephenate
YP_005237122.1	similar to Escherichia coli putative amino acid/amine transport protein (AAC74861.1); MFS family
YP_005237123.1	similar to Escherichia coli putative AraC-type regulatory protein (AAC74860.1); AraC/XylS family
YP_005237128.1	contains diguanylate cyclase/phosphodiesterase domain 1
YP_005237135.1	scaffolding protein for murein-synthesizing holoenzyme
YP_005237136.1	similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1)
YP_005237137.1	similar to Escherichia coli putative aldehyde reductase (AAC74851.1)
YP_005237140.1	catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate
YP_005237142.1	this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress
YP_005237145.1	catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis
YP_005237146.1	converts asparagine to aspartate and ammonia
YP_005237148.1	SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane
YP_005237150.1	catalyzes the formation of selenophosphate from selenide and ATP
YP_005237151.1	decatenates replicating daughter chromosomes
YP_005237152.1	converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer
YP_005237154.1	MutT
YP_005237155.1	removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction
YP_005237157.1	catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate
YP_005237159.1	a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH
YP_005237160.1	catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation
YP_005237161.1	catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism
YP_005237163.1	periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP
YP_005237164.1	3' incision activity; acts with UvrC
YP_005237165.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_005237167.1	osmotically-inducible lipoprotein E; activator of ntr-like gene protein
YP_005237169.1	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport
YP_005237170.1	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport
YP_005237171.1	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport
YP_005237172.1	represses the celABCDF-ydjC operon involved in carbon uptake
YP_005237173.1	similar to Escherichia coli phospho-beta-glucosidase; cryptic (AAC74804.1)
YP_005237175.1	Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide
YP_005237178.1	affects inhibition after overreplication of chromosome in dnaAcos mutants
YP_005237179.1	similar to Escherichia coli part of a kinase (AAC74799.1)
YP_005237180.1	LexA-regulated gene
YP_005237181.1	YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate
YP_005237185.1	similar to Escherichia coli 6-phosphofructokinase II; suppressor of pfkA (AAC74793.1)
YP_005237186.1	salt-inducible
YP_005237191.1	O-antigen polymerase (SW:RFC_SALTY)
YP_005237194.1	catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_005237195.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_005237196.1	similar to Escherichia coli 50S ribosomal subunit protein A (AAC74787.1)
YP_005237197.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_005237199.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_005237200.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_005237201.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_005237202.1	with BtuD and BtuF transports vitamin B12 into the cell
YP_005237203.1	similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane
YP_005237204.1	ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell
YP_005237205.1	similar to Escherichia coli lipoprotein (AAC74778.1)
YP_005237207.1	putative diguanylate cyclase/phosphodiesterase domain 1
YP_005237210.1	tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate
YP_005237214.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_005237215.1	acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids
YP_005237217.1	similar to Escherichia coli flavoprotein; probably electron transport (AAC74769.1)
YP_005237218.1	May play a role in a redox process
YP_005237219.1	YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain
YP_005237221.1	similar to Escherichia coli putative AraC-type regulatory protein (AAC74766.1); AraC family
YP_005237222.1	may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain
YP_005237223.1	similar to Escherichia coli putative enzyme (AAC74764.1)
YP_005237224.1	catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis
YP_005237225.1	YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate
YP_005237226.1	similar to Escherichia coli putative amino acid/amine transport protein (AAC74761.1); MFS family
YP_005237229.1	similar to Escherichia coli putative transport system permease protein (AAC74760.1); MFS family
YP_005237231.1	YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function
YP_005237233.1	similar to Escherichia coli putative oxidase (AAC74757.1)
YP_005237234.1	possibly involved in aromatic compounds catabolism; PaaI
YP_005237236.1	similar to Escherichia coli part of a kinase (AAC74799.1)
YP_005237237.1	functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein
YP_005237238.1	with SufCD activates cysteine desulfurase SufS
YP_005237239.1	part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE
YP_005237240.1	with SufBC  activates cysteine desulfurase SufS
YP_005237241.1	catalyzes the formation of L-alanine and selenide from selenocysteine
YP_005237242.1	Acts with SufS to catalyze the formation of L-alanine from L-cysteine
YP_005237243.1	contains putative LysM domain
YP_005237244.1	similar to Escherichia coli murein lipoprotein (AAC74747.1)
YP_005237245.1	similar to Escherichia coli murein lipoprotein (AAC74747.1)
YP_005237246.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_005237247.1	amino acid permease YeeF-like protein (gi|1526981)
YP_005237248.1	hydrolase or acyltransferase (gi|1526980)
YP_005237249.1	ORF 245 (gi|4456875); similar to STM3548
YP_005237250.1	ORF 408 (gi|4456874); DeoR family
YP_005237251.1	tetrathionate reductase subunit A; TtrA (gi|4456873)
YP_005237252.1	tetrathionate reductase subunit C; TtrC (gi|4456872)
YP_005237253.1	tetrathionate reductase subunit B; TtrB (gi|4456871)
YP_005237254.1	tetrathionate reductase complex; TtrS (gi|4456870); two-component regulatory system
YP_005237255.1	tetrathionate reductase complex; TtrR (gi|4456869); two-component regulatory system
YP_005237256.1	hypothetical 7.9 kDa protein in ssrB-ttRr intergenic region (ORF70) (SW:YDHZ_SALTY)
YP_005237257.1	ORF 319 (gi|4456867)
YP_005237258.1	ORF 242 (gi|4456866); merR family
YP_005237260.1	SsrB (gi|2765824); type III secretion system regulator; similar to DegU/UvrY/BvgA; regulated by OmpR-EnvZ; controls regulation of SPI-2 expression
YP_005237261.1	SpiR (gi|1498305); type III secretion system regulator; regulated by OmpR-EnvZ
YP_005237262.1	Salmonella typhimurium SpiC (gi|1498306); effects secretion of other SPI-2 proteins; interacts with host cell TassC and Hook3 proteins; type III secretion; prevents fusion of endosome/lysosome with Salmonella-containing vacuoles
YP_005237263.1	SpiA (gi|1498307); type III secretion system apparatus
YP_005237264.1	SpiB (gi|1498308); type III secretion system
YP_005237265.1	putative secretory apparatus component (gi|3377860)
YP_005237268.1	putative secreted protein (gi|3377862)
YP_005237269.1	putative secretion chaperone (gi|3377863)
YP_005237270.1	SseC (gi|3377864)
YP_005237271.1	SseD (gi|3776122)
YP_005237272.1	SseE (gi|3377866)
YP_005237273.1	SscB (gi|3377867)
YP_005237274.1	SseF (gi|3377868)
YP_005237275.1	SseG (gi|3377858)
YP_005237276.1	SsaH (gi|2460267)
YP_005237277.1	SsaH (gi|3776128)
YP_005237278.1	SsaI (gi|3776129)
YP_005237279.1	similar to yscJ/mxiJ/prgK family of lipoproteins; secretion system apparatus lipoprotein SsaJ precursor (SW:SSAJ_SALTY)
YP_005237281.1	secretion system apparatus protein SsaK (SW:SSAK_SALTY)
YP_005237282.1	secretion system apparatus protein SsaL (SW:SSAL_SALTY)
YP_005237283.1	secretion system apparatus protein SsaM (SW:SSAM_SALTY)
YP_005237284.1	with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system
YP_005237285.1	similar to YscN family of proteins; probable secretion system apparatus ATP synthase SsaN (SW:SSAN_SALTY)
YP_005237286.1	secretion system apparatus protein SsaO (SW:SSAO_SALTY)
YP_005237287.1	secretion system apparatus protein SsaP (SW:SSAP_SALTY)
YP_005237288.1	secretion system apparatus protein SsaQ (SW:SSAQ_SALTY); type III secretion system apparatus protein
YP_005237289.1	part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response
YP_005237290.1	secretion system apparatus protein SsaS (SW:SSAS_SALTY); similar to YscS of the secretion system of Yersinia
YP_005237291.1	secretion system apparatus protein SsaT (SW:SSAT_SALTY); similar to YscT of the secretion system of Yersinia
YP_005237292.1	member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli
YP_005237294.1	NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones
YP_005237295.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_005237296.1	catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge
YP_005237297.1	uncharacterized member of the major facilitator superfamily (MFS)
YP_005237298.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74731.1); LysR family
YP_005237299.1	binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers
YP_005237301.1	SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals
YP_005237302.1	similar to Escherichia coli putative lipoprotein (AAC74727.1)
YP_005237304.1	Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A)
YP_005237305.1	Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione
YP_005237306.1	FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide
YP_005237307.1	TetR/AcrR family
YP_005237310.1	SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water
YP_005237312.1	similar to Escherichia coli putative membrane protein (AAC74716.1)
YP_005237314.1	Transcription regulator that can both activate or repress expression
YP_005237315.1	outer membrane lipoprotein SlyB precursor (SW:SLYB_SALTY)
YP_005237316.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_005237317.1	MliC; membrane-bound lysozyme inhibitor of c-type lysozyme
YP_005237318.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate
YP_005237319.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_005237320.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal
YP_005237321.1	similar to Escherichia coli glutathionine S-transferase (AAC74707.1)
YP_005237322.1	mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation
YP_005237324.1	DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines
YP_005237325.1	With RsxABCDG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase
YP_005237326.1	part of membrane-bound complex hought to be involved in electron transport to nitrogen
YP_005237327.1	RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents
YP_005237328.1	part of membrane-bound complex thought to be involved in electron transport to nitrogen
YP_005237329.1	part of membrane-bound complex thought to be involved in electron transport to nitrogen
YP_005237330.1	inner membrane protein
YP_005237332.1	YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes
YP_005237335.1	catalyzes the formation of inosine from adenosine
YP_005237339.1	mannose-6-phosphate isomerase (SW:MANA_SALTY)
YP_005237340.1	fumarate hydratase class I aerobic isozyme (SW:FUMA_SALTY)
YP_005237342.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_005237343.1	binds to DNA replication terminator sequences to prevent passage of replication forks
YP_005237344.1	similar to Escherichia coli sensor histidine protein kinase (RstA regulator) (AAC74681.1); in two-component regulatory system with RstA
YP_005237347.1	similar to Escherichia coli putative outer membrane protein (AAC74459.1); non-specific porin
YP_005237348.1	response regulator in  two-component regulatory system with  RstB
YP_005237350.1	similar to Escherichia coli putative arginine/ornithine antiporter (AAC74677.1)
YP_005237356.1	forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm
YP_005237357.1	catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme
YP_005237358.1	transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes
YP_005237360.1	with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS
YP_005237361.1	with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS
YP_005237364.1	required for growth and survival under moderately acid conditions
YP_005237366.1	similar to Escherichia coli putative transport protein (AAC74668.1); MFS family
YP_005237367.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74667.1); LysR family
YP_005237368.1	similar to Escherichia coli putative NagC-like transcriptional regulator (AAC74666.1); repressor of ptsG and ptsHI; global repressor of carbohydrate metabolism pts operon; NagC/XylR family
YP_005237369.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_005237370.1	similar to Escherichia coli putative chloride channel (AAC74664.1)
YP_005237371.1	similar to Escherichia coli putative ATP-binding component of a transport system (AAC75190.1); ABC-type ATPase component
YP_005237372.1	similar to Escherichia coli putative transport system permease protein (AAC75189.1); binding-protein-dependent
YP_005237373.1	similar to Escherichia coli putative transport system permease protein (AAC75192.1)
YP_005237374.1	similar to Escherichia coli putative transport system permease protein (AAC75189.1); ABC-type transport systems
YP_005237375.1	binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane
YP_005237376.1	similar to Escherichia coli putative DMSO reductase anchor subunit (AAC74662.1)
YP_005237377.1	similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1)
YP_005237378.1	similar to Escherichia coli putative oxidoreductase; major subunit (AAC74660.1)
YP_005237380.1	similar to Escherichia coli putative oxidoreductase; major subunit (AAC74659.1)
YP_005237383.1	similar to Escherichia coli spermidine N1-acetyltransferase (AAC74656.1)
YP_005237387.1	similar to Escherichia coli starvation-sensing protein (AAC74653.1)
YP_005237388.1	similar to Escherichia coli starvation-sensing protein (AAC74652.1)
YP_005237390.1	similar to Escherichia coli putative oxidoreductase (AAC74615.1)
YP_005237392.1	GntR family
YP_005237393.1	NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine
YP_005237394.1	peptidyl-dipeptidase DCP (SW:DCP_SALTY)
YP_005237402.1	YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters
YP_005237403.1	probable cysteine metabolite efflux pump (SW:EAMA_SALTY); integral membrane protein
YP_005237404.1	multiple antibiotic resistance protein MarB (SW:MARB_SALTY)
YP_005237405.1	transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF
YP_005237406.1	Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes
YP_005237407.1	protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function
YP_005237408.1	similar to Escherichia coli putative resistance/regulatory protein (AAC74601.1); contributes to control of arabinose regulon; MFS family
YP_005237409.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74599.1); LysR family
YP_005237410.1	similar to Escherichia coli putative aldehyde dehydrogenase (AAC74598.1)
YP_005237411.1	catalyzes the formation of glutamate from glutamine
YP_005237416.1	similar to Escherichia coli putative outer membrane protein (AAC74459.1)
YP_005237417.1	similar to Escherichia coli may modulate levels of hydrogenease-2 (AAC76027.1)
YP_005237419.1	similar to Escherichia coli nickel incorporation into hydrogenase-1 proteins (AAC74062.1)
YP_005237420.1	similar to Escherichia coli processing of HyaA and HyaB proteins (AAC74061.1)
YP_005237422.1	similar to Escherichia coli processing of HyaA and HyaB proteins (AAC74060.1)
YP_005237423.1	similar to Escherichia coli probable Ni/Fe hydrogenase 1 b-type cytochrome subunit (AAC74059.1)
YP_005237424.1	similar to Escherichia coli hydrogenase-1 large subunit (AAC74058.1)
YP_005237425.1	similar to Escherichia coli hydrogenase-1 small subunit (AAC74057.1)
YP_005237428.2	similar to Escherichia coli regulator for uxu operon (AAC77280.1); GntR family
YP_005237429.1	similar to Escherichia coli starvation-sensing protein (AAC74652.1)
YP_005237430.1	similar to Escherichia coli putative transport protein (AAC76161.1)
YP_005237432.1	similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC73932.1)
YP_005237433.1	similar to Escherichia coli 3-(3-hydroxyphenyl)propionate hydroxylase (AAC73450.1)
YP_005237434.1	marR-family
YP_005237436.1	similar to Escherichia coli synthesis of queuine in tRNA; probably S-adenosylmethionine/tRNA ribosyltransferase-isomerase (AAC73508.1)
YP_005237445.1	similar to Escherichia coli repressor of galETK operon (AAC75876.1)
YP_005237446.1	similar to Escherichia coli transport of dicarboxylates (AAC73722.1)
YP_005237447.1	similar to Escherichia coli enzyme that may degrade or block biosynthesis of endogenous mal inducer; probably aminotrasferase (AAC74694.1)
YP_005237448.1	similar to Escherichia coli part of glycogen operon; glycosyl hydrolase; debranching enzyme (AAC76456.1)
YP_005237449.1	similar to Escherichia coli trehalase 6-P hydrolase (AAC77196.1)
YP_005237450.1	similar to Escherichia coli 1,4-alpha-glucan branching enzyme (AAC76457.1)
YP_005237451.1	outer membrane or secreted
YP_005237453.1	similar to Escherichia coli osmotically inducible protein (AAC74555.1); resistance protein; osmotically inducible
YP_005237455.1	protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase
YP_005237456.1	malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate
YP_005237458.1	similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs
YP_005237459.1	nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase
YP_005237460.1	similar to Escherichia coli formate dehydrogenase-N; nitrate-inducible; iron-sulfur beta subunit (AAD13439.1); Fe-S beta subunit
YP_005237461.1	similar to Escherichia coli formate dehydrogenase-N; nitrate-inducible (AAD13438.1); putative molybdopterin oxidoreductases
YP_005237465.1	outer membrane porin protein PmpD (SW:OMPD_SALTY)
YP_005237467.1	methyl viologen resistance protein SmvA (SW:SMVA_SALTY)
YP_005237468.1	TetR family
YP_005237470.1	nitrite extrusion protein 2; nitrite facilitator 2 (SW:NARU_SALTY); MFS superfamily
YP_005237472.1	similar to Escherichia coli cryptic nitrate reductase 2; alpha subunit (AAC74550.1)
YP_005237473.1	similar to Escherichia coli cryptic nitrate reductase 2; beta subunit (AAC74549.1)
YP_005237474.1	similar to Escherichia coli cryptic nitrate reductase 2; delta subunit; assembly function (AAC74548.1)
YP_005237475.1	similar to Escherichia coli cryptic nitrate reductase 2; gamma subunit (AAC74547.1)
YP_005237476.1	hypothetical protein in nhoA 5'region (SW:YDDE_SALTY)
YP_005237477.1	N-hydroxyarylamine O-acetyltransferase (SW:NHOA_SALTY)
YP_005237483.1	L-asparagine permease (L-asparagine transport protein) (SW:ANSP_SALTY); APC family
YP_005237485.1	similar to Escherichia coli putative receptor (AAC74534.1)
YP_005237487.1	similar to Escherichia coli putative outer membrane receptor for iron transport (AAC74533.1)
YP_005237488.1	GntR family
YP_005237491.1	similar to Escherichia coli putative oxidoreductase (AAC74531.1)
YP_005237492.1	similar to Escherichia coli putative resistance protein (AAC74530.1)
YP_005237495.1	SrfA (gi|8347258); ssrAB-activated gene
YP_005237496.1	SrfB (gi|8347259); ssrAB-activated gene
YP_005237497.1	SrfC (gi|8347260); contains predicted coiled-coil structure; ssrAB-activated gene
YP_005237501.1	catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation
YP_005237502.1	similar to Escherichia coli multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system (AAC74521.1); GntR family
YP_005237503.1	D-alanyl-D-alanine dipeptidase for peptidoglycan digestion (gi|4585342)
YP_005237505.1	putative membrane protein UgtL (gi|4585341); similar to chitinase from Schizosaccharomyces
YP_005237507.1	translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles
YP_005237509.1	similar to Escherichia coli putative collagenase (AAC74517.1)
YP_005237510.1	oxidoreductase
YP_005237511.1	similar to Escherichia coli putative membrane transport protein (AAC74515.1)
YP_005237513.1	with TehA confers resistance to tellurite
YP_005237514.1	similar to Escherichia coli tellurite resistance (AAC74511.1); TDT family
YP_005237515.1	involved in lipopolysaccharide biosynthesis
YP_005237516.1	similar to Escherichia coli acetylase; acetylates N-terminal serine of 50S ribosomal subunit protein L7/L12 (AAC74509.1)
YP_005237518.1	similar to Escherichia coli putative lyase/synthase (AAC77261.1)
YP_005237519.1	similar to Escherichia coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1)
YP_005237520.1	similar to Escherichia coli putative PTS system enzyme IIC component (AAC77260.1)
YP_005237521.1	similar to Escherichia coli putative nucleoside triphosphatase (AAC77259.1)
YP_005237522.1	similar to Escherichia coli putative PTS system enzyme II A component (AAC77258.1)
YP_005237523.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_005237524.1	similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC77256.1); DeoR family
YP_005237526.1	similar to Escherichia coli L-lactate dehydrogenase (AAC76629.1)
YP_005237529.1	involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans
YP_005237532.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74504.1); LysR family
YP_005237533.1	similar to Escherichia coli methyl-accepting chemotaxis protein III; ribose and galactose sensor receptor (AAC74503.1)
YP_005237535.1	similar to Escherichia coli alcohol dehydrogenase class III; formaldehyde dehydrogenase; glutathione-dependent (AAC73459.1)
YP_005237536.1	similar to Escherichia coli putative alpha helix chain (AAC73460.1)
YP_005237541.1	secreted effector J (gi|9931614); Salmonella translocated effector; regulated by SPI-2
YP_005237544.1	similar to Escherichia coli putative periplasmic binding transport protein (AAC74987.1)
YP_005237545.1	similar to Escherichia coli putative transport system permease protein; formerly yecC (AAC74985.1); amino acid
YP_005237546.1	similar to Escherichia coli putative ATP-binding component of a transport system (AAC76303.1)
YP_005237547.1	similar to Escherichia coli putative transport system permease protein; formerly yecC (AAC74985.1)
YP_005237550.1	B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm
YP_005237552.1	involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain
YP_005237553.1	FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds
YP_005237558.1	Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes
YP_005237559.1	similar to Escherichia coli heat shock protein hslJ (AAC74461.1)
YP_005237562.1	similar to Escherichia coli putative oxidoreductase; Fe-S subunit (AAC74460.1)
YP_005237564.1	similar to Escherichia coli putative filament protein (AAC74458.1)
YP_005237565.1	similar to Escherichia coli methylviologen resistance (AAC73644.1)
YP_005237567.1	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs
YP_005237568.1	exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA
YP_005237570.1	similar to Escherichia coli methyl-accepting chemotaxis protein I serine sensor receptor (AAC77311.1); similar to C-terminus of many MCPs
YP_005237572.1	contains putative Smr domain
YP_005237573.1	methylated-DNA protein-cysteine methyltransferase (SW:OGT_SALTY)
YP_005237574.1	Global transcription factor that controls the expression of over 100 target genes in response to anoxia
YP_005237575.1	with UspC and UspD is involved in resistance to UV irradiation
YP_005237580.1	similar to Escherichia coli thiol peroxidase (AAC74406.1)
YP_005237582.1	similar to Escherichia coli putative factor (AAC74304.1); similar to invasin C of Yersinia; intimin
YP_005237585.1	AraC family; helix-turn-helix
YP_005237586.1	similar to Escherichia coli putative oxidoreductase (AAC77206.1)
YP_005237589.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76546.1); LysR family
YP_005237591.1	similar to Escherichia coli putative transport periplasmic protein (AAC74411.1); negative regulator of mulitple antibiotic resistance
YP_005237592.1	similar to Escherichia coli putative carboxypeptidase (AAC74408.1)
YP_005237593.1	similar to Escherichia coli putative muconate cycloisomerase I (AAC74407.1)
YP_005237594.1	antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein
YP_005237596.1	transposase for insertion sequence element IS200 (SW:T200_SALTY)
YP_005237597.1	regulates genes involved in the biosynthesis and transport of aromatic amino acids
YP_005237599.1	similar to Escherichia coli putative enzymes (AAC74403.1)
YP_005237600.1	similar to Escherichia coli phage shock protein (AAC74390.1)
YP_005237601.1	similar to Escherichia coli phage shock protein (AAC74389.1)
YP_005237602.1	with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock
YP_005237603.1	acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding
YP_005237604.1	involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF
YP_005237605.1	transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor
YP_005237606.1	peptide transport periplasmic protein SapA precursor (SW:SAPA_SALTY); ABC superfamily periplasmic protein
YP_005237607.1	peptide transport system permease protein SapB (SW:SAPB_SALTY); ABC superfamily membrane protein
YP_005237608.1	peptide transport system permease protein SapC (SW:SAPC_SALTY); ABC superfamily membrane protein
YP_005237609.1	peptide transport system atp-binding protein SapD (SW:SAPD_SALTY); ABC superfamily ATP-binding protein
YP_005237610.1	peptide transport system atp-binding protein SapF (SW:SAPF_SALTY); ABC superfamily ATP-binding protein
YP_005237611.1	putative diguanylate cyclase/phosphodiesterase domain 2
YP_005237615.1	putative e6 protein
YP_005237616.1	hypothetical 10.4 kDa protein in fabI/envM 5'region (SW:YCJE_SALTY)
YP_005237617.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_005237619.1	similar to Escherichia coli putative oxidoreductase (AAC74369.1)
YP_005237620.1	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
YP_005237622.1	c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP
YP_005237624.1	similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC74366.1); DeoR family
YP_005237626.1	osmotically inducible lipoprotein B (SW:OSMB_SALTY); osmotically inducible
YP_005237627.1	involved in start site selection during the initiation of translation
YP_005237628.1	OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_005237630.1	similar to Escherichia coli putative heat shock protein (AAC74362.1)
YP_005237632.1	similar to Escherichia coli non-essential phosphatidylglycerophosphate phosphatase, membrane bound (AAC74360.1)
YP_005237633.1	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate
YP_005237634.1	Catalyzes the conversion of citrate to isocitrate
YP_005237636.1	LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation
YP_005237639.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_005237642.1	SohB; periplasmic protein; member of the peptidase S49 family
YP_005237644.1	similar to Escherichia coli putative oxidoreductase (AAC74353.1)
YP_005237645.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_005237646.1	catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA
YP_005237647.1	TrpH protein (SW:TRPH_SALTY); TrpR controlled transcriptional unit in the 5' upstream region of the trp operon
YP_005237648.1	trp operon leader peptide (SW:LPW_SALTY)
YP_005237649.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_005237650.1	TrpD; with Trp E catalyzes the formation of anthranilate from chorismate and glutamine, TrpE provides the glutamine amidotransferase activity; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis
YP_005237651.1	monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate
YP_005237652.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_005237653.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_005237655.1	similar to Escherichia coli putative structural proteins (AAC74340.1)
YP_005237657.1	putative catalase (gi|7162108)
YP_005237658.1	receptor for colicin S4
YP_005237659.1	similar to Escherichia coli putative ferredoxin (AAC73391.1)
YP_005237661.1	Involved in cell division; probably involved in intracellular septation
YP_005237662.1	YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins
YP_005237663.2	membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins
YP_005237664.1	unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity
YP_005237666.1	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)
YP_005237668.1	oligopeptide transport ATP-binding protein; OppF (SW:OPPF_SALTY); ABC superfamily ATP-binding protein
YP_005237669.1	oligopeptide transport ATP-binding protein OppD (SW:OPPD_SALTY); ABC superfamily ATP-binding protein
YP_005237670.1	oligopeptide transport system permease protein OppC (SW:OPPC_SALTY); ABC superfamily membrane protein
YP_005237671.1	oligopeptide transport system permease protein OppB (SW:OPPB_SALTY); ABC superfamily membrane protein
YP_005237672.1	periplasmic oligopeptide-binding protein precursor (SW:OPPA_SALTY); ABC superfamily periplasmic protein; contains chaperone properties
YP_005237674.1	similar to Escherichia coli putative channel protein (AAC74324.1); MarC family
YP_005237675.1	similar to Escherichia coli CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase (AAC74323.1); multifunctional alcohol dehydrogenase AdhE
YP_005237676.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_005237678.1	DNA-binding protein H-NS; histone-like protein HLP-II; protein H1; protein B1 (SW:HNS_SALTY); HU; BH2; HD; NS; pleiotropic regulator
YP_005237680.1	together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose
YP_005237681.1	similar to Escherichia coli Hnr protein (AAC74317.1); for protein turnover; involved in mouse virulence
YP_005237684.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_005237686.1	contains TPR repeats
YP_005237688.1	similar to Escherichia coli nitrate reductase 1; cytochrome b(NR); gamma subunit (AAC74311.1)
YP_005237689.1	similar to Escherichia coli nitrate reductase 1; delta subunit; assembly function (AAC74310.1); chaperone required for molybdenum cofactor assembly in nitrate reductase 1
YP_005237690.1	similar to Escherichia coli nitrate reductase 1; FeS; beta subunit (AAC74309.1)
YP_005237691.1	similar to Escherichia coli nitrate reductase 1; alpha subunit (AAC74308.1)
YP_005237693.1	similar to Escherichia coli nitrite extrusion protein (AAC74307.1); MFS superfamily
YP_005237695.1	similar to Escherichia coli nitrate/nitrate sensor histidine protein kinase acts on NarL regulator (AAC74306.1); in two component regulatory system; senses nitrate/nitrite; regulates anaerobic respiration and fermentation
YP_005237696.1	two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase
YP_005237697.1	similar to Escherichia coli putative factor (AAC74304.1)
YP_005237698.1	putative ACR involved in intracellular sulfur reduction
YP_005237699.1	in Escherichia coli this protein putatively regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions
YP_005237700.1	similar to Escherichia coli sodium-calcium/proton antiporter (AAC74300.1); CaCA family
YP_005237701.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_005237703.1	regulation of invasion genes; (gi|4887121)
YP_005237704.1	HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB
YP_005237705.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_005237706.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_005237708.1	Incorporates lipoproteins in the outer membrane after they are released by the LolA protein
YP_005237709.1	catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the mevalonate-independent pathway of isoprenoid biosynthesis
YP_005237712.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_005237713.2	putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport
YP_005237714.1	YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function
YP_005237715.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_005237716.1	the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_005237720.1	similar to Escherichia coli hydrogenase-1 small subunit (AAC74057.1)
YP_005237721.1	involved in hydrogen cycling during fermentative growth
YP_005237722.1	similar to Escherichia coli probable Ni/Fe hydrogenase 1 b-type cytochrome subunit (AAC74059.1)
YP_005237723.1	HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1)
YP_005237724.1	involved in processing hydrogenase proteins HyaA and HyaB
YP_005237725.1	similar to Escherichia coli nickel incorporation into hydrogenase-1 proteins (AAC74062.1)
YP_005237726.1	similar to Escherichia coli probable third cytochrome oxidase subunit I (AAC74063.1)
YP_005237727.1	similar to Escherichia coli probable third cytochrome oxidase subunit II (AAC74064.1)
YP_005237729.1	similar to Escherichia coli NADP-specific glutamate dehydrogenase (AAC74831.1)
YP_005237731.1	periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell
YP_005237734.1	similar to Escherichia coli murein transglycosylase E (AAC74277.1)
YP_005237735.1	catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine
YP_005237736.1	the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli
YP_005237737.1	catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA
YP_005237738.1	catalyzes the oxidative deamination of D-amino acids
YP_005237740.1	similar to Escherichia coli putative sporulation protein (AAC74272.1)
YP_005237741.1	Multifunctional regulator of fatty acid metabolism
YP_005237742.1	involved in regulation of intracellular pH under alkaline conditions
YP_005237743.1	disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein
YP_005237750.1	similar to Escherichia coli putative isomerase (AAC74264.1); FAA
YP_005237752.1	blocks the formation of polar Z-ring septums
YP_005237753.1	ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums
YP_005237754.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_005237755.1	similar to Escherichia coli RNase D; processes tRNA precursor (AAC74874.1)
YP_005237756.1	transposase for insertion sequence element IS200 (SW:T200_SALTY)
YP_005237758.1	Activates fatty acids by binding to coenzyme A
YP_005237760.1	similar to Escherichia coli putative outer membrane protein (AAC74876.1)
YP_005237762.1	similar to Escherichia coli putative enzyme (AAC74878.1)
YP_005237764.1	hypothetical protein in fadD-pabB intergenic region (SW:YOAH_SALTY)
YP_005237765.1	catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine
YP_005237766.1	hypothetical protein in pabB-sdaA intergenic region (SW:YEAB_SALTY)
YP_005237767.1	similar to Escherichia coli L-serine deaminase (AAC74884.1)
YP_005237769.1	similar to Escherichia coli putative transport protein (AAC74886.1)
YP_005237771.1	similar to Escherichia coli PTS enzyme IIAB; mannose-specific (AAC74887.1)
YP_005237772.1	similar to Escherichia coli PTS enzyme IIC; mannose-specific (AAC74888.1)
YP_005237773.1	hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel
YP_005237775.1	membrane protein YebN
YP_005237776.1	methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth
YP_005237777.1	similar to Escherichia coli septum formation; penicillin-binding protein 3; peptidoglycan synthetase (AAC73195.1)
YP_005237779.1	cold shock-like protein CspC (SW:CSPC_SALTY); multicopy suppresses mukB mutants; putative regulator
YP_005237784.1	putative periplasmic protein
YP_005237787.1	similar to Escherichia coli putative regulator (AAC74897.1); IclR family
YP_005237789.1	similar to Escherichia coli putative transport protein (AAC74898.1)
YP_005237790.1	putative metalloprotease
YP_005237791.1	Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3
YP_005237792.1	affects solute and DNA transport through an unknown mechanism
YP_005237793.1	contains putative GAF domain
YP_005237796.1	in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA
YP_005237800.1	Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins
YP_005237803.1	SopE2 (gi|9651642); invasion-associated protein; secreted by SPI-1; interacts with chaperone InvB; guanine nucleotide exchange factor for Cdc42; activates Cdc42 which results in actin cytoskeleton rearrangements and internalization
YP_005237813.1	PagO protein (SW:PAGO_SALTY); PhoPQ-activated gene
YP_005237820.1	PhoPQ-activated gene (gi|2582047)
YP_005237829.1	exoVIII; similar to Escherichia coli exonuclease VIII; ds DNA exonuclease; 5'-3' specific (AAC74432.1)
YP_005237832.1	putative periplasmic protein
YP_005237833.1	similar to Escherichia coli putative resistance protein (AAC74910.1)
YP_005237834.1	similar to CopC
YP_005237835.1	similar to Escherichia coli DNA polymerase III theta subunit (AAC74912.1)
YP_005237837.1	3'-5' exonuclease activity on single or double-strand DNA
YP_005237838.1	PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues
YP_005237840.1	secreted protein; unknown function
YP_005237841.1	in SOS regulon; dependent on cyclic AMP and H-NS
YP_005237842.1	non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis
YP_005237843.1	catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate
YP_005237844.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_005237846.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_005237849.1	Represses the expression of the zwf, eda, glp and gap
YP_005237850.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_005237851.1	Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA
YP_005237854.1	involved in transport of zinc(II) with ZnuA and C
YP_005237855.1	involved in transport of zinc(II) with ZnuA and C
YP_005237856.1	involved in transport of zinc(II) with ZnuA and C
YP_005237857.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA duringbranch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_005237858.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_005237862.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_005237864.1	converts dATP to dAMP and pyrophosphate
YP_005237865.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_005237871.1	similar to Escherichia coli putative enzyme (AAC74941.1)
YP_005237872.1	similar to Escherichia coli copper homeostasis protein (AAC74944.1)
YP_005237875.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_005237877.1	penicillin-binding protein 2; PBP-2 (SW:PBP2_SALTY)
YP_005237879.1	flagellar protein FlhE precursor (SW:FLHE_SALTY)
YP_005237880.1	membrane protein involved in the flagellar export apparatus
YP_005237881.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_005237883.1	cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation
YP_005237884.1	chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble
YP_005237885.1	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins
YP_005237886.1	methylates the MCP
YP_005237887.2	methyl-accepting chemotaxis protein II; MCP-II (SW:MCP2_SALTY); aspartate sensor-receptor
YP_005237888.1	chemotaxis protein CheW (SW:CHEW_SALTY); regulation; couples CheA histidine kinase to transducers
YP_005237889.1	chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component
YP_005237890.1	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_005237891.1	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_005237893.1	With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems
YP_005237894.1	with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems
YP_005237897.1	ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress
YP_005237898.1	similar to Escherichia coli trehalose-6-phosphate synthase (AAC74966.1)
YP_005237899.2	biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature
YP_005237900.1	similar to Escherichia coli 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis (AAC73527.1)
YP_005237902.1	similar to Escherichia coli ferritin-like protein (AAC74972.1)
YP_005237905.1	cytoplasmic iron storage protein
YP_005237907.1	similar to Escherichia coli tyrosine-specific transport system (AAC74977.1); HAAAP family
YP_005237908.1	similar to the C-terminal domain of SecA
YP_005237912.1	similar to Escherichia coli phosphatidylglycerophosphate synthetase/CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase (AAC74979.1)
YP_005237913.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_005237914.1	in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system
YP_005237917.1	regulates genes involved in cell division
YP_005237918.1	similar to Escherichia coli putative ATP-binding component of a transport system (AAC74984.1)
YP_005237919.1	similar to Escherichia coli putative transport system permease protein; formerly yecC (AAC74985.1)
YP_005237920.1	catalyzes the formation of pyruvate from D-cysteine
YP_005237921.1	similar to Escherichia coli putative periplasmic binding transport protein (AAC74987.1)
YP_005237922.1	expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence
YP_005237923.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes
YP_005237924.1	transposase for insertion sequence element is200 (SW:T200_SALTY)
YP_005237926.1	N-methylation of lysine residues in flagellin (SW:FLIB_SALTY)
YP_005237927.1	structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes
YP_005237929.1	involved in flagellin assembly
YP_005237930.1	flagellin specific chaperone
YP_005237931.1	binds flagellar cap subunits (FliD) and seems to prevents their oligomerization  prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family
YP_005237932.1	converts 1,4-alpha-D-glucans to maltodextrin
YP_005237933.1	hypothetical 15.5 kDa protein in amyA-fliE intergenic region (SW:YEDD_SALTY)
YP_005237934.1	hypothetical 44.2 kDa protein in amyA-fliE intergenic region (SW:YEDE_SALTY); component of transport system
YP_005237935.1	hypothetical 8.6 kDa protein in amyA-fliE intergenic region; ORF 9 (SW:YEDF_ECOLI)
YP_005237937.1	forms a junction between the M-ring and FlgB during flagella biosynthesis
YP_005237939.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_005237940.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_005237941.1	binds to and inhibits the function of flagella specific ATPase FliI
YP_005237942.1	involved in type III protein export during flagellum assembly
YP_005237943.1	rod/hook and filament chaperone
YP_005237944.1	flagellar hook-length control protein (SW:FLIK_SALTY)
YP_005237945.1	interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring
YP_005237946.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_005237947.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_005237948.1	with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus
YP_005237949.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_005237950.1	with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus
YP_005237951.1	FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus
YP_005237952.1	positive transcriptional regulator of capsular/exo-polysaccharide synthesis; LuxR/UhpA family (SW:RCSA_SALTY)
YP_005237953.1	downstream region B; regulated by DsrA and HNS, under control of RpoS
YP_005237955.1	catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate
YP_005237960.1	similar to Escherichia coli putative transmembrane subunit (AAC75025.1)
YP_005237961.1	similar to Escherichia coli DNA mismatch endonuclease patch repair protein (AAC75026.1); patch repair protein
YP_005237962.1	similar to Escherichia coli DNA cytosine methylase (AAC75027.1)
YP_005237966.1	similar to Escherichia coli putative outer membrane protein (AAC74459.1)
YP_005237968.1	similar to Escherichia coli cold shock-like protein (AAC74625.1)
YP_005237970.1	binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization
YP_005237971.1	binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization
YP_005237974.1	DNA invertase pin protein; similar to CP-933H; AAG54580 and E14 pin: AAA24391 and Mu gin;AAF01129
YP_005237975.1	similar to S. typhimurium LT2; AAF33527
YP_005237977.1	similar to Mu gpU; AAF01128 and P2 gpG; AAD03287
YP_005237978.1	Phage tail protein; similar to Fels-2 phage tail protein NP_461634 and lambda related protein in pMT1 NP_047853
YP_005237981.1	similar to Mu gp45; AAF01123
YP_005237982.1	similar to Mu P; NP_050648
YP_005237983.1	similar to Mu N; AAC23161
YP_005237984.1	similar to Xylella fastidiosa ; F82769
YP_005237986.1	similar to Mu gpM; BAA19196
YP_005237987.1	similar to Mu gpL; P44233
YP_005237992.1	similar to CP-933C; AAG55948
YP_005237994.1	similar to Agrobacterium tumefaciens; AAK86763
YP_005237995.1	similar to Rhodobacter capsulatus; AAF13181
YP_005237996.1	similar to Hk97 gp3; AAA80202 and HK022; AAF30355
YP_005237998.1	similar to E. coli YMFN; P75978. D3; AAD38954
YP_005238000.1	similar to Xenorhabdus nematophila; CAB58450
YP_005238004.1	similar to ES18 gp15; CAA47618
YP_005238005.1	similar to Pseudomonas aeruginosa; BAA83137
YP_005238006.1	similar to Xenorhabdus nematophila ; CAB58444 and P22 gp13; AAF75039
YP_005238010.1	similar to E.coli O157:H7; BAB35618 and CP-933O; AAG56170
YP_005238011.1	similar to Xylella fastidiosa; XF2294
YP_005238012.1	similar to CP-9333U; AAG57024 and CP-933O; AAG56131
YP_005238013.1	similar to E. coli b2356; A65009 and E. coli 10.3KDa; P76509 and CP-933V; AAG57233
YP_005238014.1	similar to E. coli 18.8KDa b2357; P76510 and E. coli O157:H7; BAB34011
YP_005238015.1	similar to CP-933M; AAG55470 and E. coli; BAB16223
YP_005238017.1	similar to S. flexneri 179; S34345 and P4 ORF199; CAA80647
YP_005238018.1	similar to E14 ymfl; P75976
YP_005238019.1	similar to Streptomyces coelicolor; CAB39703
YP_005238020.1	similar to HK022 cI; CAA3422 and Xylella fastidiosa ; F82772
YP_005238021.2	similar to E. coli 16.5Kda INTC-DSDC and Xylella fastidiosa; XF1650
YP_005238022.1	similar to E. coli INTC-DSDC region and Xylella fastidiosa;E82655
YP_005238026.1	similar to N15 gp45;AAC19083 and CP-933R; AAG56431
YP_005238027.1	similar to H19J; CAB38712 and 933W; AAD25483
YP_005238028.1	similar to CP-933O; AAG56113 and CP-933P; AAK16992 and CP-933M; AAG55458
YP_005238030.1	similar to CP-933U; AAG57039 and CP-933M; AAG55457
YP_005238034.1	contains TPR repeats
YP_005238038.1	Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile
YP_005238039.1	similar to STM2508 and STM2902
YP_005238041.1	similar to STM2508 and STM2901
YP_005238042.1	MATE family
YP_005238044.1	protein ErkF/SrfK precursor (SW:ERFK_SALTY)
YP_005238045.1	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole
YP_005238046.1	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole
YP_005238047.1	catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP
YP_005238048.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_005238049.1	with CbiNQ forms the ABC transporter for cobalt import
YP_005238050.1	cobalt transport protein CbiQ (SW:CBIQ_SALTY)
YP_005238051.1	periplasmic cobalt binding component of the cobalt transport system
YP_005238052.1	catalyzes the ATP-dependent transport of cobalt
YP_005238053.1	catalyzes the formation of precorrin-3A from precorrin-2
YP_005238054.1	cobalt chelatase (SW:CBIK_SALTY)
YP_005238055.1	CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6
YP_005238056.1	catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine
YP_005238057.1	catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3
YP_005238058.1	precorrin-4 C11-methyltransferase (SW:CBIF_SALTY)
YP_005238059.1	catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating
YP_005238060.1	catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a
YP_005238061.1	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A
YP_005238062.1	catalyzes the interconversion of precorrin-8X and cobyrinic acid
YP_005238063.1	converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
YP_005238064.1	responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid
YP_005238066.1	regulatory protein PocR (SW:POCR_SALTY); propanediol utilization protein; AraC family
YP_005238067.2	propanediol diffusion facilitator (SW:PDUF_SALTY); propanediol utilization protein
YP_005238068.1	propanediol utilization protein PduA (SW:PDUA_SALTY); propanediol utilization protein
YP_005238069.1	propanediol utilization protein PduB (SW:PDUB_SALTY); propanediol utilization protein
YP_005238070.1	glycerol dehydratase large subunit (SW:DHAB_SALTY); propanediol utilization protein
YP_005238071.1	propanediol utilization protein
YP_005238072.1	propanediol utilization protein
YP_005238073.1	propanediol utilization protein
YP_005238074.1	propanediol utilization protein
YP_005238075.1	similar to Escherichia coli detox protein (AAC75510.1); propanediol utilization protein
YP_005238076.1	similar to Escherichia coli detox protein (AAC75510.1); propanediol utilization protein
YP_005238079.1	similar to Escherichia coli detox protein (AAC75509.1); propanediol utilization protein
YP_005238080.1	related to B12-dependent glycerol dehydratase
YP_005238081.1	similar to Escherichia coli ethanolamine utilization; similar to acetaldehyde dehydrogenase (AAC75508.1); propanediol utilization protein
YP_005238082.1	similar to Escherichia coli CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase (AAC74323.1); propanediol utilization protein
YP_005238083.1	similar to Escherichia coli putative membrane protein (AAC74701.1); propanediol utilization protein
YP_005238084.1	similar to Escherichia coli detox protein (AAC75510.1); propanediol utilization protein
YP_005238085.1	propanediol utilization protein PduU (SW:PDUU_SALTY); propanediol utilization protein
YP_005238086.1	propanediol utilization protein PduV (SW:PDUV_SALTY)
YP_005238087.1	involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol
YP_005238089.1	similar to Escherichia coli putative alpha helix protein (AAC75068.1)
YP_005238092.1	similar to DNA gyrase inhibitory protein (SW:GYRI_SALTY)
YP_005238093.1	removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains
YP_005238094.1	membrane-anchoring protein (SW:PHSC_SALTY); hydrogen sulfide production
YP_005238095.1	PhsB (SW:PHSB_SALTY); hydrogen sulfide production; iron-sulfur subunit; electron transfer
YP_005238096.1	membrane-anchoring protein (SW:PHSA_SALTY); hydrogen sulfide production
YP_005238098.1	similar to protein from Salmonella dublin; translocated by SPI-1; type III secretion
YP_005238100.1	Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates
YP_005238101.1	similar to Escherichia coli putative amino acid/amine transport protein (AAC75075.1); APC family
YP_005238104.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75076.1); LysR family
YP_005238105.1	similar to Escherichia coli putative enzyme of sugar metabolism (AAC75077.1)
YP_005238106.2	long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors
YP_005238107.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_005238108.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_005238109.1	catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate
YP_005238110.2	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_005238111.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_005238112.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerolphosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_005238113.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis
YP_005238114.1	chain length determinant protein; polysaccharide antigen chainregulator (SW:WZZB_SALTY); regulator of length of O-antigen component of lipopolysaccharide chains
YP_005238115.1	UDP-glucose 6-dehydrogenase (SW:UDG_SALTY)
YP_005238116.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_005238117.1	undecaprenyl-phosphate galactosephosphotransferase (SW:RFBP_SALTY); mutation results in LPS side chain defect
YP_005238118.1	phosphomannomutase (SW:RFBK_SALTY); LPS side chain defect
YP_005238119.1	mannose-1-phosphate guanylyltransferase GDP (SW:RFBM_SALTY); LPS side chain defect
YP_005238120.1	putative rhamnosyltransferase RfbN (SW:RFBN_SALTY); LPS side chain defect
YP_005238121.1	RFBU protein (SW:RFBU_SALTY); LPS side chain defect
YP_005238122.1	RFBV protein (SW:RFBV_SALTY); LPS side chain defect
YP_005238123.1	putative O-antigen transporter (SW:RFBX_SALTY); LPS side chain defect
YP_005238124.1	CDP-abequose synthase (SW:RFBJ_SALTY); LPS side chain defect
YP_005238125.1	lipopolysaccharide biosynthesis protein RfbH (SW:RFBH_SALTY); LPS side chain defect
YP_005238126.1	CDP-glucose 4,6-dehydratase (SW:RFBG_SALTY); LPS side chain defect
YP_005238127.1	glucose-1-phosphate cytidylyltransferase (SW:RFBF_SALTY); LPS side chain defect
YP_005238128.1	catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose
YP_005238129.1	DTDP-4-dehydrorhamnose 3,5-epimerase (SW:RFBC_SALTY)
YP_005238130.1	glucose-1-phosphate thymidylyltransferase (SW:RFBA_SALTY)
YP_005238131.1	with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose
YP_005238132.1	NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose
YP_005238133.2	together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose
YP_005238134.1	WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid
YP_005238135.1	putative colanic acid biosynthesis glycosyl transferase WcaL (SW:WCAL_SALTY); in colanic acid gene cluster
YP_005238136.1	similar to Escherichia coli putative galactokinase (AAC75106.1); in colanic acid gene cluster
YP_005238137.1	similar to Escherichia coli probable export protein (AAC75107.1); in colanic acid gene cluster
YP_005238138.1	WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid
YP_005238139.1	phosphomannomutase in colanic acid gene cluster (SW:MANB_SALTY)
YP_005238141.1	mannose-1-phosphate guanylyltransferase; GDP (SW:MANC_SALTY); in colanic acid gene cluster
YP_005238142.1	similar to Escherichia coli putative colanic biosynthesis glycosyl transferase (AAC75111.1); involved in in colanic acid biosynthesis
YP_005238143.1	similar to Escherichia coli GDP-mannose mannosyl hydrolase (AAC75112.1); in colanic acid biosynthesis
YP_005238144.1	similar to Escherichia coli putative nucleotide di-P-sugar epimerase/dehydratase (AAC75113.1); GDP fucose synthetase in colanic acid biosyntheis
YP_005238145.1	similar to Escherichia coli GDP-D-mannose dehydratase (AAC75114.1); colanic acid gene cluster
YP_005238146.1	acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit)
YP_005238147.1	similar to Escherichia coli putative colanic acid biosynthesis glycosyl transferase (AAC75116.1); involved in colanic acid biosynthesis
YP_005238148.1	essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance
YP_005238149.1	similar to Escherichia coli putative glycosyl transferase (AAC75118.1); involved in colanic acid biosynthesis
YP_005238150.1	acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium
YP_005238151.1	similar to Escherichia coli putative regulator (AAC75120.1); involved in colanic acid biosynthesis
YP_005238152.1	Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide)
YP_005238153.1	Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis
YP_005238154.1	similar to Escherichia coli putative polysaccharide export protein (AAC75123.1)
YP_005238156.1	similar to Escherichia coli putative transport protein (AAC75124.1)
YP_005238157.1	YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs
YP_005238158.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_005238159.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_005238161.1	similar to Escherichia coli putative sensor-type protein (AAC75128.1); contains PAS/PAC domain; domain 1/2
YP_005238162.2	inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine
YP_005238163.1	similar to Escherichia coli putative heat shock protein (AAC75130.1); Hsp70/DnaK
YP_005238165.1	Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate
YP_005238166.1	Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate
YP_005238167.1	Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate
YP_005238168.1	similar to Escherichia coli putative transport protein (AAC75138.1); MFS family
YP_005238169.1	similar to Escherichia coli sensor protein for BaeR (AAC75139.1); in two-component regulatory system
YP_005238170.1	response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport
YP_005238179.1	similar to hypothetical proteins from Salmonella spp.
YP_005238180.1	cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role
YP_005238181.1	catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate
YP_005238182.1	similar to Escherichia coli putative nucleoside permease protein (AAC75159.1); MFS family
YP_005238184.1	similar to Escherichia coli putative kinase (AAC75161.1)
YP_005238185.1	similar to Escherichia coli putative transcriptional regulator (AAC75162.1); GntR family
YP_005238186.1	catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine
YP_005238187.1	catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP
YP_005238191.1	similar to Escherichia coli putative type-1 fimbrial protein (AAC75169.1)
YP_005238192.1	similar to Escherichia coli putative outer membrane protein (AAC75170.1)
YP_005238193.1	similar to Escherichia coli putative chaperone (AAC75171.1)
YP_005238194.1	similar to Escherichia coli putative fimbrial-like protein (AAC75172.1)
YP_005238196.1	similar to Escherichia coli putative ATPase (AAC75174.1)
YP_005238197.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_005238199.1	hypothetical 16.9 kDa lipoprotein precursor
YP_005238201.1	unknown function; when overproduced it confers drug-resistance
YP_005238202.1	similar to Escherichia coli putative 2-component sensor protein (AAC75187.1)
YP_005238203.1	similar to Escherichia coli putative transcriptional regulator (AAC75188.1); MerR family
YP_005238205.1	similar to Escherichia coli putative transport system permease protein (AAC75189.1)
YP_005238206.1	similar to Escherichia coli putative ATP-binding component of a transport system (AAC75190.1)
YP_005238207.1	similar to Escherichia coli putative transport system permease protein (AAC75191.1)
YP_005238208.1	similar to Escherichia coli putative transport system permease protein (AAC75192.1); putative ABC superfamily binding protein; possibly glycine betaine choline transport for osmoprotection
YP_005238209.1	periplasmic beta-glucosidase precursor (SW:BGLX_SALTY)
YP_005238211.1	component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent
YP_005238212.1	specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7
YP_005238216.1	DedA family
YP_005238217.1	similar to Escherichia coli putative oxidoreductase (AAC75198.1)
YP_005238218.1	may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride
YP_005238220.1	similar to Escherichia coli putative nitrogen regulatory protein (AAC75201.1)
YP_005238221.1	catalyzes the formation of catechol from salicylate
YP_005238222.1	similar to Escherichia coli regulator of transcription; stringent starvation protein A (AAC76261.1)
YP_005238223.1	similar to Escherichia coli putative isomerase (AAC74264.1)
YP_005238225.1	similar to Escherichia coli putative transport protein (AAC73456.1)
YP_005238226.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74504.1); LysR family
YP_005238228.1	similar to Escherichia coli putative seritonin transporter (AAC75203.1)
YP_005238229.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_005238230.1	similar to Escherichia coli vancomycin sensitivity (AAC75205.1)
YP_005238232.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_005238233.1	catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines
YP_005238234.1	ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex
YP_005238235.1	with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains
YP_005238237.1	D-galactose-binding periplasmic protein precursor; GDP; D-galactose/D-glucose binding protein; GGBP (SW:DGAL_SALTY); ABC superfamily periplasmic protein
YP_005238239.1	negative regulator of the mglBAC operon for galactose utilization
YP_005238242.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_005238246.1	similar to Escherichia coli putative esterase (AAC75215.1)
YP_005238248.1	similar to Escherichia coli L-serine deaminase (AAC74884.1)
YP_005238250.1	similar to Escherichia coli 3-phosphoserine phosphatase (AAC77341.1)
YP_005238251.1	similar to Escherichia coli regulator of uhpT (AAC76690.1)
YP_005238252.1	Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein
YP_005238254.1	similar to Escherichia coli lysine-specific permease (AAC75217.1); APC family
YP_005238256.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75218.1); LysR family
YP_005238259.1	Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues
YP_005238260.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_005238261.1	converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers
YP_005238262.1	phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr
YP_005238266.1	sugar efflux transporter B (SW:SETB_SALTY)
YP_005238271.2	Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein
YP_005238275.1	by similarity, Spr seems to have peptidase activity; involved in thermoresistance
YP_005238277.1	involved in resistance to lambda and N4 phages
YP_005238279.1	similar to Escherichia coli putative transport system permease protein (AAC75239.1)
YP_005238280.1	similar to Escherichia coli putative transport system permease protein (AAC75240.1)
YP_005238281.1	similar to Escherichia coli putative ATP-binding component of a transport system (AAC75241.1); contains duplicated ATPase domain
YP_005238284.1	Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance
YP_005238285.1	catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA
YP_005238286.1	similar to Escherichia coli putative ATP-dependent helicase (AAC75245.1)
YP_005238287.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_005238290.1	present in spermidine nucleoids
YP_005238292.1	hypothetical protein in rplY-proL intergenic region (SW:YEJM_SALTY); alkaline phosphatase superfamily
YP_005238293.1	putative peptidase UmuD; similar to Escherichia coli SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC (AAC74267.1)
YP_005238294.1	similar to virulence protein MsgA (SW:MSGA_SALTY); similar to STM1241; ssrB-regulated factor
YP_005238295.1	O-antigen five; acetylation of the O-antigen (LPS)
YP_005238303.2	similar to antiterminator protein Q of phage P5
YP_005238306.1	induced by the SPI-2 regulator ssrA/B; secreted by SPI-2
YP_005238308.1	similar to Escherichia coli putative membrane protein (AAC74454.1)
YP_005238309.1	similar to virulence protein MsgA (SW:MSGA_SALTY); similar to STM1241
YP_005238312.1	nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes
YP_005238313.1	similar to Escherichia coli possible subunit of heme lyase (AAC75254.1); involved in cytochrome c-type biogenesis
YP_005238314.1	similar to Escherichia coli disulfide oxidoreductase; biogenesis of cytochrome c (AAC75255.1)
YP_005238315.1	similar to Escherichia coli cytochrome c-type biogenesis protein (AAC75256.1)
YP_005238316.1	CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane
YP_005238317.1	similar to Escherichia coli heme exporter protein C (AAC75258.1); cytochrome c-type biogenesis protein
YP_005238318.1	similar to Escherichia coli heme exporter protein C (AAC75259.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein
YP_005238319.1	similar to Escherichia coli heme exporter protein B; cytochrome c-type biogenesis protein (AAC75260.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein
YP_005238320.1	ATP-binding protein; required for proper cytochrome c maturation
YP_005238321.1	with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone
YP_005238322.1	small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA
YP_005238323.1	part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA
YP_005238324.1	part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway
YP_005238325.1	periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC
YP_005238327.1	Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.
YP_005238329.1	similar to Escherichia coli ecotin; serine protease inhibitor (AAC75269.1)
YP_005238330.1	efflux pump for the antibacterial peptide microcin J25
YP_005238331.1	alkylated DNA repair protein ALKB (SW:ALKB_SALTY); specific for alkylated DNA
YP_005238332.1	ADA regulatory protein; regulatory protein of adaptative response; (SW:ADA_SALTY); AraC/Xyl family
YP_005238333.1	catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway
YP_005238334.1	allows for ions and hydrophilic solutes to cross the outer membrane
YP_005238336.1	similar to Escherichia coli putative 2-component sensor protein (AAC75276.1); regulatory protein
YP_005238337.1	two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF
YP_005238338.1	similar to Escherichia coli sensor for ctr capsule biosynthesis; probable histidine kinase acting on RcsB (AAC75278.1); in two-component regulatory system; regulates colanic capsule biosynthesis
YP_005238340.1	negatively supercoils closed circular double-stranded DNA
YP_005238343.1	similar to Escherichia coli starvation-sensing protein (AAC74653.1)
YP_005238344.1	similar to Escherichia coli putative transport protein (AAC75306.1)
YP_005238345.1	GntR family
YP_005238346.1	Involved in ubiquinone biosynthesis
YP_005238348.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_005238349.1	B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA
YP_005238350.1	plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases
YP_005238351.2	similar to Escherichia coli putative transport (AAC76498.1)
YP_005238352.1	LysR family
YP_005238353.1	hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic
YP_005238354.1	catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell
YP_005238355.1	anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor
YP_005238356.1	sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters
YP_005238357.1	anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate
YP_005238360.1	ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system
YP_005238363.1	similar to Escherichia coli putative transport protein (AAC75306.1); MFS family
YP_005238364.1	similar to Escherichia coli putative racemase (AAC75307.1)
YP_005238365.1	similar to Escherichia coli putative regulator (AAC75308.1)
YP_005238366.1	similar to molybdopterin-biosynthesis
YP_005238368.1	similar to oxidative damage repair enzymes
YP_005238369.1	similar to Escherichia coli protein induced by aluminum (AAC75312.1)
YP_005238371.1	catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose
YP_005238372.1	catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate
YP_005238373.1	Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains
YP_005238375.1	catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A
YP_005238377.1	similar to Escherichia coli putative transport/receptor protein (AAC75318.1)
YP_005238378.1	polymyxin b resistance protein PmrD (SW:PMRD_SALTY)
YP_005238379.1	O-succinylbenzoic acid-CoA ligase (SW:MENE_SALTY)
YP_005238380.1	catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate
YP_005238381.1	catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA
YP_005238382.1	catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA
YP_005238383.1	catalyzes the formation of succinate semialdehyde from 2-oxoglutarate and the synthesis of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate from succinate semialdehyde and isochorismate
YP_005238384.1	synthesizes isochorismate acid from chorismate
YP_005238387.1	similar to Escherichia coli positive regulator of CheA protein activity (AAC74957.1)
YP_005238388.1	putative von Willebrand factor; contains vWF type A domain
YP_005238392.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_005238393.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_005238394.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_005238395.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_005238396.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_005238397.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_005238398.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_005238399.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_005238400.1	shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase
YP_005238401.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_005238402.1	NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms
YP_005238403.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_005238404.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_005238408.1	similar to Escherichia coli NADH dehydrogenase transcriptional regulator; LysR family (AAC75349.1)
YP_005238409.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_005238410.1	similar to Escherichia coli putative alpha helix protein (AAC75351.1); HD superfamily
YP_005238411.1	similar to Escherichia coli putative transport protein (AAC75352.1)
YP_005238412.1	similar to Escherichia coli putative phosphatase (AAC75353.1)
YP_005238417.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_005238418.1	catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate
YP_005238419.1	similar to Escherichia coli putative S-transferase (AAC75358.1)
YP_005238420.1	similar to Escherichia coli 1-deoxyxylulose-5-phosphate synthase; flavoprotein (AAC73523.1)
YP_005238421.1	similar to Escherichia coli transketolase 1 isozyme (AAC75972.1)
YP_005238422.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_005238424.1	similar to Escherichia coli putative PTS system enzyme II A component (AAC77152.1)
YP_005238426.1	similar to Escherichia coli regulator of gluconate (gnt) operon (AAC76463.1)
YP_005238427.1	similar to Escherichia coli putative regulator (AAC75359.1)
YP_005238430.1	similar to Escherichia coli putative S-transferase (AAC75362.1)
YP_005238431.1	similar to Escherichia coli putative sugar nucleotide epimerase (AAC75364.1)
YP_005238432.1	histidine transport ATP-binding protein HisP (SW:HISP_SALTY); ABC superfamily ATP-binding protein
YP_005238433.1	histidine transport system permease protein HisM (SW:HISM_SALTY); ABC superfamily membrane protein
YP_005238434.1	histidine transport system permease protein HisQ (SW:HISQ_SALTY); ABC superfamily membrane protein
YP_005238435.1	histidine-binding periplasmic protein precursor; HBP (SW:HISJ_SALTY); ABC superfamily binding protein
YP_005238436.1	lysine-arginine-ornithine-binding periplasmic protein precursor; LAO-binding protein (SW:ARGT_SALTY); ABC superfamily binding protein
YP_005238438.1	catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate
YP_005238439.1	similar to Escherichia coli putative amino acid/amine transport protein (AAC73363.1)
YP_005238441.1	similar to Escherichia coli acid sensitivity protein, putative transporter (AAC74565.1)
YP_005238442.1	similar to Escherichia coli diaminopimelate decarboxylase (AAC75877.1)
YP_005238443.1	similar to Escherichia coli response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS) (AAC75280.1)
YP_005238444.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_005238445.1	membrane protein required for colicin V production
YP_005238447.1	similar to Escherichia coli putative lipoprotein (AAC75374.1)
YP_005238448.1	similar to Escherichia coli dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase (AAC75375.1); formylTHF polyglutamate synthase activity
YP_005238449.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_005238450.1	putative DedA family
YP_005238451.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_005238452.1	similar to Escherichia coli putative PTS system enzyme II A component (AAC75379.1)
YP_005238453.2	catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate
YP_005238454.1	in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein
YP_005238455.1	similar to Escherichia coli putative transport protein (AAC75382.1)
YP_005238458.1	similar to Escherichia coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); helix-turn-helix
YP_005238462.1	FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_005238463.1	catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules
YP_005238465.1	similar to Escherichia coli putative transporting ATPase (AAC75386.1)
YP_005238466.1	similar to Escherichia coli putative structural protein (AAC75387.1)
YP_005238467.1	D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm
YP_005238468.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_005238469.1	involved in methylation of ribosomal protein L3
YP_005238470.1	contains putative Smr domain
YP_005238472.1	multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate
YP_005238473.1	FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth
YP_005238477.1	similar to Escherichia coli transport of long-chain fatty acids; sensitivity to phage T2 (AAC75404.1)
YP_005238479.1	similar to Escherichia coli putative transport (AAC75407.1)
YP_005238480.1	outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA
YP_005238481.1	phosphoglycerate transport system transcriptional regulatory protein PgtA (SW:PGTA_SALTY); phosphoglycerate transport
YP_005238482.1	protein for signal transmission; PgtB (SW:PGTB_SALTY); phosphoglycerate transport
YP_005238483.1	protein for signal transmission; PgtC precursor (SW:PGTC_SALTY); phosphoglycerate transport
YP_005238484.1	phosphoglycerate transporter protein (SW:PGTP_SALTY); phosphoglycerate transport
YP_005238487.1	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock
YP_005238488.1	similar to Escherichia coli putative aminotransferase (AAC75438.1)
YP_005238490.1	catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate
YP_005238492.1	similar to Escherichia coli acetolactate synthase III; valine sensitive; large subunit (AAC73188.1); putative thiamine pyrophosphate enzymes
YP_005238494.1	similar to Escherichia coli putative reductase (AAC76037.1)
YP_005238496.1	manganese transport protein MntH (SW:MNTH_SALTY); Nramp family
YP_005238497.1	similar to Escherichia coli permease of transport system for 3 nucleosides (AAC75452.1); NUP family
YP_005238498.1	putative diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain 2
YP_005238501.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_005238502.1	similar to Escherichia coli regulator for xapA (AAC75458.1); LysR family
YP_005238504.1	similar to Escherichia coli xanthosine permease (AAC75459.1); MFS superfamily
YP_005238506.1	similar to Escherichia coli putative sugar hydrolase (AAC75461.1)
YP_005238507.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75462.1); LysR family
YP_005238508.1	similar to Escherichia coli putative cytochrome oxidase (AAC75463.1)
YP_005238510.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_005238511.1	interacts with cell division protein FitsZ and may be required to anchor septal ring structure
YP_005238512.1	putative role in sulfur assimilation
YP_005238513.1	CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis
YP_005238517.1	phosphocarrier protein HPR; histidine-containing protein (SW:PTHP_ECOLI); PTS family, Hpr protein
YP_005238518.1	Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system
YP_005238519.1	functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose
YP_005238521.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal
YP_005238522.1	putative transcriptional regulator PtsJ (SW:PTSJ_SALTY); GntR family
YP_005238523.1	Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group
YP_005238524.1	hypothetical 13.3 kDa protein in pdxK-cysM intergenic region (SW:YFEK_SALTY)
YP_005238525.1	hypothetical 20.5 kDa protein in pdxK-cysM intergenic region (SW:YFEL_SALTY); penicillin-binding protein
YP_005238526.1	catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide
YP_005238527.1	sulfate transport atp-binding protein CYSA (SW:CYSA_SALTY); ABC superfamily ATP-binding protein; chromate resistance
YP_005238528.1	Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import
YP_005238529.1	similar to Escherichia coli sulfate, thiosulfate transport system permease T protein (AAC75477.1); ABC superfamily membrane protein
YP_005238530.1	thiosulfate-binding protein precursor (SW:CYSP_SALTY); ABC superfamily binding protein
YP_005238531.1	similar to Escherichia coli putative oxidoreductase (AAC75479.1)
YP_005238536.1	probable N-acetylmuramoyl-L-alanine amidase AMIA precursor (SW:AMIA_SALTY)
YP_005238537.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_005238538.1	hypothetical protein in eutR-hemF intergenic region; ORF33 (SW:YPFK_SALTY)
YP_005238539.1	hypothetical 30.0 kDa protein in eutR-hemF intergenic region (ORF79) (SW:YPFL_SALTY)
YP_005238540.1	activates the transcription of the ethanolamine utilization operon
YP_005238541.1	ethanolamine utilization protein EutK precursor (SW:EUTK_SALTY)
YP_005238542.1	ethanolamine utilization protein EutL (SW:EUTL_SALTY)
YP_005238543.1	catalyzes the formation of acetaldehyde from ethanolamine
YP_005238544.1	ethanolamine ammonia-lyase heavy chain (SW:EUTB_SALTY)
YP_005238545.1	ethanolamine utilization protein EutA
YP_005238546.1	ethanolamine utilization protein EutH (SW:EUTH_SALTY)
YP_005238547.1	ethanolamine utilization protein EutG (SW:EUTG_SALTY)
YP_005238548.1	EutJ (SW:EUTJ_SALTY); putative heatshock protein 70
YP_005238549.1	invovled in ethanolamine utilization protein EutE (SW:EUTE_SALTY)
YP_005238550.2	involved in ethanolamine utilization protein EutN (SW:EUTN_SALTY)
YP_005238551.1	involved in ethanolamine utilization protein EutM precursor (SW:EUTM_SALTY)
YP_005238552.1	in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta
YP_005238553.1	ethanolamine utilization cobalamin adenosyltransferase (SW:EUTT_SALTY)
YP_005238554.1	ethanolamine utilization protein EutQ (SW:EUTQ_SALTY)
YP_005238555.1	ethanolamine utilization protein EutP (SW:EUTP_SALTY)
YP_005238556.1	ethanolamine utilization protein EutS (SW:EUTS_SALTY)
YP_005238557.1	transposase for insertion sequence element IS200 (SW:T200_SALTY)
YP_005238559.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_005238561.1	Maintains the balance of metabolites in the pentose-phosphate pathway
YP_005238562.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_005238567.1	similar to Escherichia coli putative beta-lactamase (AAC75483.1)
YP_005238569.1	unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic)
YP_005238570.2	similar to Escherichia coli sensor for nitrate reductase system; protein histidine kinase; acts on NarP and narL (AAC75522.1); in two-component regulatory system
YP_005238572.1	similar to Escherichia coli protein that results in sensitivity to acriflavine; integral membrane protein; possible efflux pump (AAC75523.1); RND family
YP_005238574.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_005238578.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_005238579.1	similar to Escherichia coli lipoprotein-34 (AAC75530.1)
YP_005238580.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_005238581.1	negative transcriptional regulator of the gcvTHP operon
YP_005238582.1	bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine
YP_005238585.1	similar to Escherichia coli putative permease (AAC75546.1); PerM family
YP_005238586.1	putative inner membrane or exported protein
YP_005238587.1	similar to Escherichia coli putative oxidoreductase (AAC75548.1)
YP_005238588.1	controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP
YP_005238589.1	similar to Escherichia coli uracil transport (AAC75550.1); NCS2 family
YP_005238590.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_005238592.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_005238593.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_005238594.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_005238595.1	similar to Escherichia coli exopolyphosphatase (AAC75555.1)
YP_005238596.1	similar to Escherichia coli putative cytochrome C-type biogenesis protein (AAC75556.1)
YP_005238601.2	similar to STM2011 and STM2902
YP_005238602.1	similar to Escherichia coli IS3 putative transposase (AAC75150.1)
YP_005238603.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_005238604.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_005238605.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_005238606.1	ShdA (gi|5107805); similar to the C-terminal region of AIDA; IcsA; subspecies I-specific; Peyer's patch colonization and shedding factor
YP_005238610.1	RatA (gi|4583529)
YP_005238611.1	SinI (gi|4583530)
YP_005238612.1	SinH (gi|4583531); similar to Escherichia coli intimin and Yersinia pestis invasin proteins
YP_005238616.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_005238618.1	with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis
YP_005238620.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_005238621.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_005238622.1	similar to Escherichia coli putative membrane protein (AAC75569.1)
YP_005238625.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_005238627.1	similar to Escherichia coli hydrogenase 4 Fe-S subunit (AAC75541.1)
YP_005238628.1	similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit C (AAC73982.1)
YP_005238629.1	similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1)
YP_005238630.1	similar to Escherichia coli putative oxidoreductase, major subunit (AAC74660.1)
YP_005238631.1	penicillin-insensitive transglycosylase/transpeptidase
YP_005238633.1	catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds
YP_005238637.1	enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I
YP_005238638.1	catalyzes the removal of an N-terminal amino acid from a peptide or arylamide
YP_005238639.1	believed to be involved in assembly of Fe-S clusters
YP_005238640.1	similar to Escherichia coli 2FE-2S ferredoxin, electron carrer protein (AAC75578.1); believed to be involved in assembly of Fe-S clusters
YP_005238641.1	involved in the maturation of iron-sulfur cluster-containing proteins
YP_005238642.1	J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins
YP_005238643.1	forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein
YP_005238644.1	similar to NifU; involved in Fe-S cluster formation
YP_005238645.1	catalyzes the removal of sulfur from cysteine to form alanine
YP_005238647.1	regulates the expression of the iscRSUA operon
YP_005238648.1	similar to Escherichia coli putative ATP synthase beta subunit (AAC75585.1)
YP_005238651.1	similar to Escherichia coli enhances synthesis of sigma32 in mutant; extragenic suppressor, may modulate RNAse III lethal action (AAC75586.1)
YP_005238652.1	similar to Escherichia coli putative enzyme (AAC75587.1)
YP_005238653.1	anaerobic sulfite reductase subunit A (anaerobic sulfite reductaseiron-sulfur subunit) (SW:ASRA_SALTY)
YP_005238654.1	with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide
YP_005238655.1	anaerobic sulfite reductase subunit C (SW:ASRC_SALTY)
YP_005238657.1	putative periplasmic protein
YP_005238659.1	putative transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters
YP_005238660.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_005238662.1	flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine
YP_005238663.1	regulates the cadBA operon
YP_005238664.1	antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein
YP_005238665.1	lysine decarboxylase; inducible (SW:DCLY_SALTY)
YP_005238666.1	similar to Escherichia coli putative peptide transporter (AAC77091.1); POT family
YP_005238667.1	indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA
YP_005238668.1	similar to Escherichia coli putative 2-component transcriptional regulator (AAC75607.1); regulator of two-component regulator protein; EBP family
YP_005238669.1	similar to Escherichia coli putative alpha helix protein (AAC75608.1); regulator of two-component regulator protein; EBP familiiy
YP_005238670.1	similar to Escherichia coli putative 2-component sensor protein (AAC75609.1); regulatory protein
YP_005238672.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_005238674.1	YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function
YP_005238675.1	similar to Escherichia coli putative deaminase (AAC75612.1)
YP_005238677.1	similar to Escherichia coli putative PTS enzyme II (AAC75482.1)
YP_005238678.1	catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway
YP_005238679.1	putative ABC superfamily membrane protein
YP_005238680.1	catalyzes the formation of 2-dehydropantoate from (R)-pantoate
YP_005238681.1	similar to Escherichia coli putative resistance protein (AAC76571.1)
YP_005238682.1	similar to Escherichia coli cyn operon positive regulator (AAC73441.1); LysR family
YP_005238684.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_005238685.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_005238686.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_005238687.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_005238688.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_005238689.1	catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins
YP_005238690.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_005238691.1	leucine-rich repeat protein
YP_005238693.1	similar to transposase
YP_005238694.1	similar to pagK
YP_005238695.1	phage tail assembly protein (gi|2460256)
YP_005238696.1	phage tail assembly protein (gi|2460256)
YP_005238697.1	similar to Escherichia coli putative membrane protein (AAC74454.1)
YP_005238699.1	similar to host specificity protein-J in phage lambda
YP_005238700.1	similar to tail assembly protein I in phage lambda
YP_005238701.1	similar to tail assembly protein K in phage lambda
YP_005238702.1	similar to phage tail component L
YP_005238703.1	similar to lambda phage M tail component (gi|2232363)
YP_005238704.1	similar to lambda phage tail component H (gi|2232364)
YP_005238705.1	similar to minor tail protein
YP_005238706.1	similar to minor tail protein
YP_005238707.2	similar to major tail protein
YP_005238709.2	similar to Escherichia coli putative virulence protein (AAC74514.1)
YP_005238710.1	similar to minor tail protein Z
YP_005238711.1	similar to minor capsid protein FII of phage N15
YP_005238712.1	similar to head protein gp7 of phage 21
YP_005238713.1	similar to head protein gpshp of phage 21
YP_005238714.1	similar to head-tail preconnector gp5 of phage 21; similar to Escherichia coli putative protease (AAC74354.1)
YP_005238715.1	similar to head-tail preconnector gp4 of phage 21
YP_005238716.1	similar to head to tail joining protein
YP_005238717.1	similar to terminase large chain gp2 of N15
YP_005238718.1	similar to DNA packaging protein Nu1 of phage 21; similar to Qin prophage packaging protein NU1 (AAC74621.1)
YP_005238720.1	similar to Escherichia coli bacteriophage lambda endopeptidase (AAC73657.1)
YP_005238721.1	similar to morphogenesis protein of phage B103; similar to Escherichia coli bacteriophage lambda lysozyme (AAC73656.1)
YP_005238726.1	similar to antirepressor protein of phage P22
YP_005238728.1	similar to antiterminator Q
YP_005238736.1	similar to hypothetical protein Senterienterica_19312 [Salmonella  enterica subsp. enterica serovar Heidelberg str. SL486]
YP_005238741.1	similar to hypothetical protein Salentericaenterica_18455  [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537]
YP_005238744.2	similar to hypothetical protein Salentericaenterica_18440  [Salmonella enterica subsp. enterica serovar Weltevreden str.  HI_N05-537]
YP_005238745.1	similar to hypothetical protein Salentericaenterica_18435  [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537]
YP_005238749.1	similar to exodeoxyribonuclease VIII (gi|7467238)
YP_005238750.1	similar to enterohemolysin 1 in Escherichia coli; hypothetical protein AAC26069.1 (gi|7467267)
YP_005238752.1	similar to excisionase in phage phi-80; probable excisionase (gi|7467278)
YP_005238753.1	similar to integrase in phage (gi|7467280)
YP_005238756.1	involved in the reduction of the SoxR iron-sulfur cluster
YP_005238757.1	periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP
YP_005238758.1	similar to Escherichia coli anti sigma-E/sigma 24 factor; negative regulatory protein (AAC75625.1)
YP_005238759.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_005238762.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_005238763.1	similar to Escherichia coli putative enzyme (AAC75628.1)
YP_005238765.1	facilitates an early step in the assembly of the 50S subunit of the ribosome
YP_005238766.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75630.1); LysR family
YP_005238768.1	stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit
YP_005238769.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_005238771.1	similar to Escherichia coli putative thioredoxin-like protein (AAC75635.1); redox factor
YP_005238775.1	catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome
YP_005238777.1	similar to Escherichia coli alpha-ketoglutarate permease (AAC75640.1); MFS family
YP_005238782.1	similar to Escherichia coli heat shock protein (AAC75641.1); Hsp 100; part of novel multi-chaperone system with DnaK, DnaJ, and GrpE
YP_005238784.1	responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA
YP_005238785.1	with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline
YP_005238786.1	associated with 30S ribosomal subunit; interferes with translation elongation
YP_005238788.1	catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis
YP_005238790.1	catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis
YP_005238791.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive
YP_005238796.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_005238797.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_005238798.1	Essential for efficient processing of 16S rRNA
YP_005238799.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_005238801.1	with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins
YP_005238803.1	CorE (gi|4877800); putative cytochrome c-type biogenesis protein; heme exporter protein C
YP_005238804.1	similar to Escherichia coli putative transport protein (AAC75662.1)
YP_005238806.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_005238807.1	catalyzes the phosphorylation of NAD to NADP
YP_005238808.1	similar to Escherichia coli protein used in recombination and DNA repair (AAC75665.1)
YP_005238809.1	similar to Escherichia coli small membrane protein A (AAC75666.1)
YP_005238812.1	lipid transport protein
YP_005238813.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_005238816.1	similar to Escherichia coli putative resistance protein (AAC73673.1)
YP_005238817.1	similar to Escherichia coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1)
YP_005238828.1	excinuclease
YP_005238832.1	similar to Escherichia coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1)
YP_005238833.1	similar to Escherichia coli PTS system glucitol/sorbitol-specific IIC component; one of two (AAC75744.1)
YP_005238834.1	similar to Escherichia coli PTS system glucitol/sorbitol-specific enzyme IIA component (AAC75746.1)
YP_005238835.1	similar to Escherichia coli PTS system glucitol/sorbitol-specific IIB component and second of two IIC components (AAC75745.1)
YP_005238836.1	similar to Escherichia coli putative dehydrogenase (AAC74397.1)
YP_005238838.1	similar to Escherichia coli probable hexulose-6-phosphate synthase (AAC77153.1)
YP_005238842.1	similar to Escherichia coli putative transport protein (AAC73180.1)
YP_005238850.1	superfamily I
YP_005238852.1	similar to Escherichia coli IS3 putative transposase (AAC75150.1)
YP_005238853.1	repressor of fliC (SW:FLJA_SALTY); flagellar synthesis
YP_005238854.1	structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes
YP_005238855.1	DNA-invertase hin (SW:HIN_SALTY); regulation of flagellar gene expression by site-specific H inversion of DNA
YP_005238860.1	related to UDP-glucuronosyltransferase
YP_005238861.1	similar to Escherichia coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1)
YP_005238862.1	similar to Escherichia coli enterochelin esterase (AAC73686.1); Fes
YP_005238863.1	alpha/beta superfamily
YP_005238864.1	Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric  enterobactin and colicins B and D; interacts with the TonB-ExbBD complex  which catalyzes the translocation of the  siderophore to the periplasmic space
YP_005238865.1	PipB2; similar to STM1088; contains pentapeptide repeats; secreted by SPI-2 type III secretion; localizes to Salmonella-containing vacuole and host cell membranes
YP_005238867.1	similar to Escherichia coli putative enzyme (AAC73964.1); similar to virK in Shigella
YP_005238874.1	similar to Escherichia coli putative 2-component sensor protein (AAC76062.1); tricarboxylic transport
YP_005238875.1	transcriptional regulatory protein TctD (SW:TCTD_SALTY); tricarboxylic transport
YP_005238880.1	in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution
YP_005238882.1	catalyzes the formation of succinate from succinate semialdehyde; NADP dependent
YP_005238883.1	catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate
YP_005238884.1	similar to Escherichia coli transport permease protein of gamma-aminobutyrate (AAC75710.1); APC family; RpoS dependent
YP_005238885.1	regulator of gab gene expression
YP_005238886.1	putative LysM domain
YP_005238888.1	YqaE family
YP_005238889.1	ArsR family
YP_005238892.1	DNA-binding protein STPA (SW:STPA_SALTY); has chaperone activity
YP_005238899.1	similar to Escherichia coli putative regulator (AAC77296.1); GntR family
YP_005238902.1	glutaredoxin-like protein NrdH (SW:NRDH_SALTY); hydrogen donor
YP_005238903.1	in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF
YP_005238904.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_005238905.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_005238906.1	with ProWX is involved in the high-affinity uptake of glycine betaine
YP_005238907.1	with ProVX is involved in the high-affinity uptake of glycine betaine
YP_005238908.1	with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine
YP_005238910.1	similar to Escherichia coli putative transport protein (AAC75728.1)
YP_005238912.1	DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB
YP_005238914.1	similar to Escherichia coli multidrug resistance secretion protein (AAC75732.1)
YP_005238915.1	similar to Escherichia coli multidrug resistance; probably membrane translocase (AAC75733.1); MFS family
YP_005238917.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_005238918.1	involved in the first step of glutathione biosynthesis
YP_005238920.1	YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent
YP_005238922.1	affects carbohydrate metabolism; has regulatory role in many processes
YP_005238923.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_005238926.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_005238927.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_005238930.1	membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan
YP_005238932.1	similar to Escherichia coli PTS system; one of two glucitol/sorbitol-specific components (AAC75744.1); PTS family
YP_005238933.1	similar to Escherichia coli PTS system; one of two glucitol/sorbitol-specific components (AAC75745.1); PTS family
YP_005238934.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_005238935.1	catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate
YP_005238936.1	regulator for glucitol utilization
YP_005238938.1	regulates genes involved in glucitol utilization
YP_005238939.1	catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate
YP_005238940.1	Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon
YP_005238941.1	detoxifies nitric oxide using NADH
YP_005238942.1	catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase
YP_005238944.1	similar to Escherichia coli transcriptional regulatory protein (AAC75754.1)
YP_005238946.1	involved in electron transport from formate to hydrogen
YP_005238948.1	putative periplasmic protein
YP_005238949.1	involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE
YP_005238950.1	similar to Escherichia coli processing of large subunit HycE of hydrogenase 3; part of the FHL complex (AAC75760.1)
YP_005238951.1	similar to Escherichia coli hydrogenase (AAC75761.1)
YP_005238952.1	electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate
YP_005238953.1	similar to Escherichia coli large subunit of hydrogenase 3; part of FHL complex (AAC75763.1)
YP_005238954.1	similar to Escherichia coli membrane-spanning protein of hydrogenase 3; part of FHL complex (AAC75764.1)
YP_005238955.1	catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3)
YP_005238956.1	similar to Escherichia coli probable small subunit of hydrogenase-3; iron-sulfur protein; part of FHL complex (AAC75766.1)
YP_005238958.1	regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon
YP_005238960.1	plays a role in hydrogenase nickel cofactor insertion
YP_005238961.1	GTP hydrolase involved in nickel liganding into hydrogenases
YP_005238962.1	HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase
YP_005238963.1	similar to Escherichia coli pleiotrophic effects on 3 hydrogenase isozymes (AAC75771.1)
YP_005238964.1	similar to Escherichia coli protein which plays a structural role in maturation of all 3 hydrogenases (AAC75772.1)
YP_005238965.2	formate hydrogenlyase transcriptional activator for fdhF, hyc and hyp operons EBP family (SW:FHLA_SALTY)
YP_005238968.1	SitA (gi|5231094); Salmonella iron transporter; Fur-regulated
YP_005238969.1	SitB (gi|5231095); Salmonella iron transporter; Fur-regulated
YP_005238970.1	SitC (gi|5231096); Salmonella iron transporter; Fur-regulated
YP_005238971.1	SitD (gi|5231097); Salmonella iron transporter; Fur-regulated
YP_005238973.1	transcriptional regulator SprB (gi|5007028)
YP_005238975.1	SprA; HilC (gi|4455106); helix-turn-helix protein; AraC family; activator for invasion genes; derepresses hilA expression
YP_005238978.1	oxygen-regulated invasion protein OrgB (SW:ORGB_SALTY); putative flagellar biosynthesis/type III secretion apparatus
YP_005238979.1	oxygen-regulated invasion protein OrgA (SW:ORGA_SALTY); putative flagellar biosynthesis/type III secretion apparatus
YP_005238980.1	PrgK protein precursor (SW:PRGK_SALTY); cell invasion protein; interacts with PrgH and forms oligomeric rings; type III secretion apparatus
YP_005238981.1	PrgJ protein (SW:PRGJ_SALTY); invasion protein; may cap needle complex; type III secretion apparatus
YP_005238982.1	PrgI protein (SW:PRGI_SALTY); invasion protein; type III secretion apparatus
YP_005238983.1	PrgH protein (SW:PRGH_SALTY); invasion protein; interacts with PrgK; tetarmerizes; with PrgK forms multimeric ring-shaped structures; type III secretion apparatus
YP_005238984.1	HilD (gi|4455108); helix-turn-helix proteins; AraC family; activator for invasion genes; derepresses hilA expression
YP_005238985.1	Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system
YP_005238986.1	invasion associated gene protein IagB precursor (SW:IAGB_SALTY)
YP_005238987.1	protein tyrosine phosphatase SptP (gi|1519054); translocated protein; type III secretion; antagonizes bacterial-encoded exchange factors SopE and SopE2 by interfering with stimulation of Cdc42 and Rac1; binds Rac1
YP_005238988.1	SicP (gi|3283218); virulence protein; chaperone for SptP; type III secretion
YP_005238990.1	carries the fatty acid chain in fatty acid biosynthesis
YP_005238991.1	Salmonella invasion protein SipA (gi|1172128); binds actin and promotes polymerization; results in membrane ruffling and internalization due to cytoskeleton rearrangements
YP_005238992.1	cell invasion protein SspD protein (gi|7443300); involved in translocating secreted proteins to host cells; translocon; type III secretion
YP_005238993.1	cell invasion protein SspC (gi|7443298); involved in translocating secreted proteins to host cell; translocon; type III secretion; inserted into host cell plasma membrane; interacts with SipC
YP_005238994.1	cell invasion protein SspB (gi|975295); involved in translocating secreted proteins to host cell; translocon; type III secretion; inserted into host cell plasma membrane; interacts with SipB
YP_005238995.1	surface presentation of antigens protein SpaT (SW:SPAT_SALTY); surface presentation of antigens; secretory proteins; partitioning factor for SipB/C; prevents premature association of SipB/C; regulates several promoters with InvF
YP_005238996.1	Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins
YP_005238997.1	surface presentation of antigens protein SpaR (SW:SPAR_SALTY); inner membrane secretory protein; type III secretion apparatus
YP_005238998.1	surface presentation of antigens protein SpaQ (SW:SPAQ_SALTY); inner membrane secretory protein; type III secretion apparatus
YP_005238999.1	part of a type III secretory system probably involved in invasion into eukaryotic cells
YP_005239000.1	involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells
YP_005239001.1	surface presentation of antigens protein SpaN (SW:SPAN_SALTY); surface presentation of antigens; secretory proteins
YP_005239002.1	surface presentation of antigens protein SpaM (SW:SPAM_SALTY); secretory proteins; type III secretion apparatus
YP_005239003.1	Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase
YP_005239004.1	surface presentation of antigens protein SpaK (SW:SPAK_SALTY); secretory protein; chaperone for SopE/SopE2; type III secretion
YP_005239005.1	invasion protein InvA (SW:INVA_SALTY); inner membrane protein; type III secretion apparatus
YP_005239006.1	invasion protein InvE (SW:INVE_SALTY); interacts with SecA-SipB/C complex; essential for translocation into host cells
YP_005239007.1	InvG protein precursor (SW:INVG_SALTY); forms ring-shaped structure in outer membrane; requires InvH for stability; type III secretion apparatus
YP_005239008.1	invasion protein InvF (SW:INVF_SALTY); SPI-1 transcription factor; activated by HilA; requires SicA as a co-factor; controls sigD/sopB, sopE and sicAsipBCDA genes
YP_005239009.1	invasion protein InvH precursor (SW:INVH_SALTY); stabilizes InvG secretin; type III secretion apparatus
YP_005239011.1	similar to STM2011 and STM2508
YP_005239018.1	similar to Escherichia coli protein phosphatase 2 (AAC75776.1)
YP_005239020.1	This protein performs the mismatch recognition step during the DNA repair process
YP_005239022.1	similar to Escherichia coli multidrug resistance; probably membrane translocase (AAC75733.1)
YP_005239023.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73313.1); LysR family
YP_005239024.1	similar to Escherichia coli putative transport protein (AAC75782.1)
YP_005239025.1	similar to Escherichia coli UDP-galactose-4-epimerase (AAC73846.1)
YP_005239027.1	similar to Escherichia coli putative epimerase/aldolase (AAC75780.1)
YP_005239029.1	similar to Escherichia coli putative dehydrogenase (AAC75778.1)
YP_005239030.1	similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC75777.1); DeoR family
YP_005239031.1	similar to Escherichia coli transcriptional regulator for cryptic hemolysin (AAC74714.1)
YP_005239032.1	similar to Escherichia coli 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (AAC75371.1)
YP_005239033.1	similar to Escherichia coli putative oxidoreductase (AAC76846.1)
YP_005239035.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses
YP_005239036.1	outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus
YP_005239038.1	catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins
YP_005239039.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_005239040.1	catalyzes the modification of U13 in tRNA(Glu)
YP_005239041.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_005239042.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_005239043.1	forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein
YP_005239045.1	similar to Escherichia coli putative cytochrome oxidase subunit (AAC75791.1)
YP_005239046.1	converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis
YP_005239047.1	may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ
YP_005239048.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_005239049.1	catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3
YP_005239059.1	hypothetical 36.1 kDa protein in cysH 3'region (ORF4) (SW:YGCC_SALTY); secreted by SPI-1; type III secretion
YP_005239060.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_005239061.1	hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide
YP_005239062.1	catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity
YP_005239063.1	similar to Escherichia coli putative 6-pyruvoyl tetrahydrobiopterin synthase (AAC75807.1)
YP_005239064.1	beta-lactamase superfamily II
YP_005239065.1	putative organic radical activating enzymes
YP_005239066.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_005239067.1	CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_005239068.1	functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era
YP_005239072.1	contains CopG/Arc/MetJ DNA-binding domain and a metal-binding domain
YP_005239073.1	(p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP
YP_005239074.1	in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]
YP_005239075.1	part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system
YP_005239077.1	similar to Escherichia coli putative glucarate dehydratase (AAC75829.1)
YP_005239078.1	similar to Escherichia coli putative glucarate dehydratase (AAC75830.1)
YP_005239079.1	similar to Escherichia coli putative transport protein (AAC75831.1); MFS family
YP_005239081.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_005239082.1	catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp
YP_005239084.1	putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function
YP_005239085.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_005239089.1	similar to Escherichia coli probable serine transporter (AAC75838.1); HAAAP family
YP_005239090.1	similar to Escherichia coli L-serine dehydratase; deaminase; L-SD2 (AAC75839.1)
YP_005239092.1	has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups
YP_005239094.1	similar to Escherichia coli L-1,2-propanediol oxidoreductase (AAC75841.1)
YP_005239095.1	catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate
YP_005239097.1	catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose
YP_005239098.1	similar to Escherichia coli L-fuculokinase (AAC75845.1)
YP_005239099.1	similar to Escherichia coli protein of fucose operon (AAC75846.1)
YP_005239100.1	regulates expression of genes involved in L-fucose utilization
YP_005239103.1	Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence
YP_005239106.1	similar to SufE
YP_005239109.1	similar to Escherichia coli putative enzyme (AAC75854.1)
YP_005239110.1	membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues
YP_005239111.1	similar to Escherichia coli putative amidase (AAC75856.1)
YP_005239112.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_005239113.1	helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity
YP_005239114.1	helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity
YP_005239115.1	similar to Escherichia coli protease III (AAC75860.1)
YP_005239116.1	catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination
YP_005239117.1	similar to Escherichia coli prepilin peptidase dependent protein C (AAC75862.1); putative component involved type IV pilin biogenesis
YP_005239119.1	similar to Escherichia coli prepilin peptidase dependent protein B (AAC75864.1); putative component involved in type IV pilin biogenesis
YP_005239120.1	similar to Escherichia coli prepilin peptidase dependent protein A (AAC75865.1); putative component innvolved in type IV pilin biogenesis
YP_005239122.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_005239123.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_005239125.1	member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr
YP_005239126.1	Hydrolyzes diadenosine polyphosphate
YP_005239132.1	MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair
YP_005239134.1	similar to Escherichia coli putative transport protein (AAC75871.1); integral membrane protein
YP_005239135.1	POT family
YP_005239137.1	complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH
YP_005239138.1	similar to Escherichia coli putative resistance protein (AAC75874.1)
YP_005239139.1	Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1
YP_005239141.1	controls transcription of galETKM
YP_005239142.1	similar to Escherichia coli ascBF operon repressor (AAC75756.1)
YP_005239143.1	catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding
YP_005239144.1	activates the transcription of the lysA gene encoding diaminopimelate decarboxylase
YP_005239145.1	similar to Escherichia coli putative resistance proteins (AAC75879.1)
YP_005239146.1	similar to Escherichia coli low-affinity L-arabinose transport system proton symport protein (AAC75880.1); MFS family
YP_005239148.1	catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate
YP_005239149.1	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
YP_005239151.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_005239152.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73606.1); LysR family
YP_005239155.1	similar to Escherichia coli putative transporter protein (AAC75884.1)
YP_005239157.1	membrane protein conferring nickel and cobalt resistance
YP_005239158.1	similar to transcriptional regulator SprB (gi|5007028)
YP_005239161.1	similar to Escherichia coli putative chaperone (AAC73811.1)
YP_005239162.1	similar to Escherichia coli putative membrane protein (AAC76082.1)
YP_005239164.2	similar to Escherichia coli putative fimbrial-like protein (AAC73813.1)
YP_005239166.1	similar to Escherichia coli outer membrane protein X (AAC73901.1)
YP_005239168.1	stability determinant protein
YP_005239172.1	similar to Escherichia coli putative lipoprotein (AAC75903.1)
YP_005239174.1	catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate
YP_005239175.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_005239176.1	peptide chain release factor 2; RF-2 (SW:RF2_SALTY)
YP_005239177.1	5'-3' single-stranded-DNA-specific exonuclease
YP_005239178.1	DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity
YP_005239179.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_005239180.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic
YP_005239184.1	physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator
YP_005239185.1	similar to Escherichia coli putative oxidoreductase (AAC75937.1)
YP_005239187.1	similar to Escherichia coli 6-phospho-beta-glucosidase A; cryptic (AAC75939.1)
YP_005239190.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_005239191.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_005239192.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_005239197.1	Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone
YP_005239198.1	exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide
YP_005239199.1	the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown
YP_005239201.1	ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function
YP_005239202.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_005239204.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_005239206.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_005239208.1	putative periplasmic immunogenic protein
YP_005239209.1	Involved in the export of arginine
YP_005239210.1	participates in the regulation of osmotic pressure changes within the cel
YP_005239211.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_005239212.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_005239213.1	NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate
YP_005239217.1	CbiQ and related transporter
YP_005239218.1	similar to Escherichia coli ATP-binding component of putrescine transport system (AAC73942.1)
YP_005239219.1	similar to Escherichia coli ATP-binding component of sulfate permease A protein; chromate resistance (AAC75475.1)
YP_005239220.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_005239222.1	contains putative chaperone function
YP_005239223.1	catalyzes the formation of putrescine from agmatine
YP_005239227.1	similar to Escherichia coli putative malate dehydrogenase  (AAC73619.1)
YP_005239228.1	similar to Escherichia coli putative oxidoreductase (AAC77314.1)
YP_005239229.1	similar to Escherichia coli putative oxidoreductase (AAC75233.1)
YP_005239230.1	similar to Escherichia coli regulator for uxu operon (AAC77280.1); GntR family
YP_005239232.1	catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis
YP_005239235.1	methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_005239237.1	similar to Escherichia coli galactose-proton symport of transport system (AAC75980.1); MFS family
YP_005239239.1	similar to Escherichia coli DNA-specific endonuclease I (AAC75982.1)
YP_005239241.1	The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_005239243.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_005239245.1	similar to Escherichia coli putative protein transport (AAC75987.1); may be involved in type II secretion
YP_005239246.1	putative enzyme with a TIM-barrel fold
YP_005239247.1	similar to Escherichia coli putative resistance protein (AAC75989.1)
YP_005239249.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_005239250.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_005239251.1	similar to Escherichia coli putative alpha helix chain (AAC75993.1)
YP_005239252.1	catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis
YP_005239256.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_005239257.1	A/G-specific adenine glycosylase (SW:MUTY_SALTY)
YP_005239260.1	Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues
YP_005239262.1	similar to Escherichia coli ornithine decarboxylase isozyme (AAC76002.1)
YP_005239265.1	similar to Escherichia coli putative transport protein (AAC76003.1)
YP_005239267.1	similar to Escherichia coli putative coenzyme A transferase (AAC75957.1)
YP_005239268.1	similar to Escherichia coli putative aldehyde dehydrogenase (AAC74469.1)
YP_005239269.1	similar to Escherichia coli citrate lyase beta chain; acyl lyase subunit (AAC73717.1); LysR family
YP_005239270.1	putative transcriptional regulator (gi|5852589); LysR family
YP_005239271.1	similar to Escherichia coli putative sulfatase (AAC74571.1)
YP_005239272.1	similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1)
YP_005239275.1	similar to Escherichia coli putative regulator (AAC76545.1); contains CheY-like receiver domain and HTH DNA-binding domain
YP_005239277.1	similar to Escherichia coli proline permease transport protein (AAC73505.1)
YP_005239281.1	similar to Escherichia coli probable oxidoreductase (AAC74383.1)
YP_005239282.1	similar to Escherichia coli phenylacetaldehyde dehydrogenase (AAC74467.1)
YP_005239290.1	similar to Escherichia coli transport of hexuronates (AAC76128.1)
YP_005239294.1	catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate
YP_005239295.1	similar to Escherichia coli D-mannonate oxidoreductase (AAC77279.1)
YP_005239296.1	catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism
YP_005239298.1	similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1)
YP_005239301.1	catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction
YP_005239303.1	YghU; B2989; one of eight putative glutathione transferase proteins from E. coli
YP_005239306.1	similar to Escherichia coli hydrogenase-2 chaperone-like protein; may effect maturation of large subunit of hydrogenase-2 (AAC76026.1)
YP_005239307.1	plays a role in hydrogenase nickel cofactor insertion
YP_005239308.1	similar to Escherichia coli member of hyb operon (AAC76028.1)
YP_005239309.1	protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC)
YP_005239310.1	involved in hydrogen uptake
YP_005239311.1	HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits
YP_005239312.1	Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2
YP_005239313.1	involved in hydrogen uptake
YP_005239316.1	similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1)
YP_005239322.1	similar to Escherichia coli putative oxidoreductase (AAC76039.1)
YP_005239323.1	membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell
YP_005239324.1	membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell
YP_005239326.1	catalyzes the formation of L-homocysteine from cystathionine
YP_005239327.1	hypothetical protein in metC 3'region (SW:YGHB_SALTY); DedA family
YP_005239328.1	similar to Escherichia coli putative AraC-type regulatory protein (AAC76046.1); AraC/XylS family
YP_005239330.1	similar to Escherichia coli putative oxidoreductase (AAC76047.1)
YP_005239331.1	methylglyoxal reductase/?-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate
YP_005239334.1	similar to Escherichia coli putative membrane pump protein (AAC73857.1)
YP_005239335.1	Ap4A
YP_005239338.1	putative FeS oxidoreductase family 2
YP_005239340.1	similar to Escherichia coli putative solute-binding transport protein (AAC76603.1)
YP_005239342.1	hypothetical 46.1 kDa protein in plsC 3'region (SW:YGIK_SALTY); integral membrane protein
YP_005239343.1	SufI protein precursor (SW:SUFI_SALTY); putative periplasmic protein
YP_005239344.1	1-acyl-SN-glycerol-3-phosphate acyltransferase (SW:PLSC_SALTY)
YP_005239345.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_005239346.1	AraC family; helix-turn-helix
YP_005239348.2	response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes
YP_005239349.1	similar to Escherichia coli putative 2-component sensor protein (AAC76062.1); regulatory protein
YP_005239351.1	similar to Escherichia coli modulator of drug activity B (AAC76064.1); drug modulator
YP_005239353.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_005239354.1	Displays esterase activity toward palmitoyl-CoA and pNP-butyrate
YP_005239355.1	similar to Escherichia coli regulator of lacZ (AAC76068.1)
YP_005239356.1	similar to Escherichia coli putative enzyme (AAC76069.1)
YP_005239357.1	ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose
YP_005239358.1	trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell
YP_005239361.1	similar to Escherichia coli putative synthetase/amidase (AAC76074.1)
YP_005239362.1	seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine
YP_005239366.1	thiol-disulfide isomerase and thioredoxin
YP_005239368.1	DHBP synthase; functions during riboflavin biosynthesis
YP_005239370.1	Involved in glycogen synthesis. May be involved in glycogen priming
YP_005239372.1	similar to Escherichia coli putative oxidoreductase (AAC76086.1)
YP_005239373.1	similar to Escherichia coli putative membrane protein (AAC76087.1)
YP_005239375.1	catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose
YP_005239376.1	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme
YP_005239378.1	contains putative SH3 domain protein
YP_005239379.1	catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases
YP_005239380.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_005239381.1	catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin
YP_005239382.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_005239384.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotese from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins
YP_005239385.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_005239386.1	synthesizes RNA primers at the replication forks
YP_005239387.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria
YP_005239391.1	similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1)
YP_005239392.1	similar to Escherichia coli aerotaxis sensor receptor; flavoprotein (AAC76107.1); senses cellular redox state or proton motive force
YP_005239394.1	catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate
YP_005239396.1	similar to Escherichia coli putative NADPH dehydrogenase (AAC76116.1)
YP_005239397.1	similar to Escherichia coli putative enzyme (AAC76119.1)
YP_005239403.1	similar to Escherichia coli putative transport protein (AAC76123.1)
YP_005239404.1	involved in the import of serine and threonine coupled with the import of sodium
YP_005239406.1	DedA family
YP_005239413.1	similar to Escherichia coli putative transferase (AAC76137.1)
YP_005239414.1	similar to Escherichia coli putative cytochrome (AAC76138.1)
YP_005239415.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76140.1); LysR family
YP_005239419.1	similar to Escherichia coli putative transport system permease protein (AAC76145.1); HAAAP family
YP_005239420.1	similar to Escherichia coli L-serine dehydratase; deaminase L-SD2 (AAC75839.1)
YP_005239421.1	similar to Escherichia coli probable formate acetyltransferase 3 (AAC76149.1)
YP_005239422.1	catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism
YP_005239423.1	involved in the import of threonine and serine in combination with the import of a proton
YP_005239424.1	catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic
YP_005239425.1	regulates the tdcABCDEFG operon which is involved in amino acid degradation
YP_005239427.1	catalyzes the reduction of tartronate semialdehyde to glycerate
YP_005239432.1	similar to Escherichia coli putative hydrolase (AAC76162.1)
YP_005239433.1	similar to Escherichia coli ribokinase (AAC76775.1); ribokinase family
YP_005239434.1	similar to Escherichia coli putative DeoR-type transcriptional regulator of Aga operon (AAC76165.1); DeoR family
YP_005239436.1	catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway
YP_005239437.1	similar to Escherichia coli 6-phosphofructokinase II; suppressor of pfkA (AAC74793.1)
YP_005239438.1	Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate
YP_005239439.1	similar to Escherichia coli split galactitol utilization operon repressor (AAC75148.1)
YP_005239441.1	similar to Escherichia coli putative glycosylase (AAC76181.1)
YP_005239443.1	Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein
YP_005239444.1	similar to Escherichia coli putative periplasmic protein (AAC76184.1)
YP_005239449.1	putative ABC superfamily membrane protein
YP_005239451.1	similar to Escherichia coli putative collagenase (AAC76192.1)
YP_005239453.1	similar to Escherichia coli putative enzyme (AAC76194.1)
YP_005239456.1	tryptophan transporter of high affinity
YP_005239457.1	participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division
YP_005239458.1	lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing
YP_005239459.1	similar to Escherichia coli polynucleotide phosphorylase; cytidylate kinase activity (AAC76198.1); member of mRNA degradosome
YP_005239461.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_005239462.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_005239463.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_005239464.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_005239465.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_005239466.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_005239467.1	catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis
YP_005239469.2	similar to Escherichia coli protein export; membrane protein (AAC76207.1); IISP family; auxillary membrane component
YP_005239470.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_005239471.1	catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate
YP_005239472.1	transposase for insertion sequence element IS200 (SW:T200_SALTY)
YP_005239474.1	inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins
YP_005239475.1	Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit
YP_005239476.1	RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability
YP_005239477.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_005239479.1	penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains
YP_005239481.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_005239482.1	involved in the peptidyltransferase reaction during translation
YP_005239483.1	similar to Escherichia coli 50S ribosomal subunit protein L21 (AAC76218.1)
YP_005239484.1	similar to Escherichia coli octaprenyl diphosphate synthase (AAC76219.1)
YP_005239485.1	activator of maltose metabolism genes
YP_005239486.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_005239487.1	BolA family
YP_005239489.1	putative STAS domain
YP_005239490.1	putative ABC superfamily
YP_005239491.1	putative ABC superfamily binding protein
YP_005239492.1	putative ABC superfamily membrane protein
YP_005239493.1	ATP-binding subunit of a putative ABC toluene efflux transporter
YP_005239494.1	YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers
YP_005239495.1	similar to Escherichia coli putative isomerase (AAC76229.1); polysialic acid capsule expression protein
YP_005239496.1	forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis
YP_005239498.1	LptA; periplasmic binding protein part of a putative ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system
YP_005239499.1	similar to Escherichia coli putative ATP-binding component of a transport system (AAC76233.1); putative ABC superfamily ATP-binding protein
YP_005239500.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_005239501.1	YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing
YP_005239502.1	similar to Escherichia coli phosphotransferase system enzyme IIA; regulates N metabolism (AAC76236.1)
YP_005239503.1	putative kinase; contains putative P-loop
YP_005239504.1	similar to Escherichia coli phosphocarrier protein HPr-like NPr; nitrogen-related; exchanges phosphate with Enzyme I Hpr (AAC76238.1)
YP_005239506.1	glycosyltransferase; polymerizes glycan strands in the peptidoglycan
YP_005239507.1	similar to Escherichia coli sigma cross-reacting protein 27A (AAC76241.1); SCRP-27A
YP_005239508.1	sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA
YP_005239512.1	catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate
YP_005239513.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_005239516.1	similar to Escherichia coli cytosine permease/transport (AAC73439.1)
YP_005239517.1	Catalyzes the deamination of cytosine to uracil and ammonia
YP_005239519.1	catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein
YP_005239520.1	Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate
YP_005239521.1	similar to Escherichia coli sialic acid transporter (AAC76256.1); MFS family
YP_005239522.1	catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid
YP_005239523.1	Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization
YP_005239524.1	similar to Escherichia coli stringent starvation protein B (AAC76260.1)
YP_005239525.1	transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation
YP_005239528.1	forms a direct contact with the tRNA during translation
YP_005239529.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_005239532.1	similar to Escherichia coli serine endoprotease (AAC76266.1)
YP_005239533.1	similar to Escherichia coli protease (AAC76267.1)
YP_005239534.1	similar to STM0063
YP_005239535.1	oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY)
YP_005239536.1	catalyzes the formation of oxaloacetate from pyruvate
YP_005239537.1	catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide
YP_005239538.1	Involved in the tartrate degradation pathway
YP_005239539.1	Involved in the tartrate degradation pathway
YP_005239540.1	similar to Escherichia coli putative transport protein (AAC75352.1)
YP_005239541.1	GntR family
YP_005239542.1	GntR family
YP_005239544.1	oxidizes malate to oxaloacetate
YP_005239546.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_005239550.1	with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate
YP_005239551.1	with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate
YP_005239552.1	membrane protein AaeX; the gene is a member of the aaeXAB operon
YP_005239553.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76275.1); LysR family
YP_005239554.1	responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential  topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA
YP_005239556.1	involved in the processing of the 5'end of 16S rRNA
YP_005239557.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_005239558.1	part of cell wall structural complex MreBCD; transmembrane component
YP_005239559.1	similar to Escherichia coli rod shape-determining protein (AAC76282.1)
YP_005239560.1	similar to Escherichia coli regulator of ftsI; penicillin binding protein 3; septation function (AAC76283.1); HSP70 class molecular chaperones involved in cell morphogenesis
YP_005239562.1	regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules
YP_005239563.1	similar to Escherichia coli putative dehydrogenase (AAC76285.1)
YP_005239564.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_005239565.1	in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme
YP_005239568.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_005239569.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_005239571.1	mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase
YP_005239572.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_005239574.1	putative TIM-barrel enzyme; hypothetical 35.9 kDa protein in pmrA-fis intergenic region (SW:YHDG_SALTY)
YP_005239575.1	Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription
YP_005239576.1	similar to Escherichia coli putative methyltransferase (AAC76294.1)
YP_005239578.1	membrane domain involved in; diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain 2
YP_005239579.1	similar to Escherichia coli putative transcriptional regulator (AAC76296.1); regulator for envCD; acrEF; TetR/AcrR family
YP_005239582.1	similar to Escherichia coli transmembrane protein affects septum formation and cell membrane permeability (AAC76297.1)
YP_005239583.1	similar to Escherichia coli integral transmembrane protein; acridine resistance protein F (AAC76298.1); RND family
YP_005239589.1	similar to Escherichia coli putative transferase (AAC76304.1)
YP_005239591.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_005239592.1	RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA
YP_005239593.1	similar to Escherichia coli putative DNA topoisomerase (AAC76308.1)
YP_005239595.1	similar to Escherichia coli orf; fragment 1 (AAC76311.1); putative protein involved in DNA uptake
YP_005239596.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_005239597.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_005239598.1	catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase
YP_005239599.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_005239600.1	forms homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_005239602.1	mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators
YP_005239604.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_005239605.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_005239606.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_005239607.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_005239608.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_005239609.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_005239610.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_005239611.1	late assembly protein
YP_005239612.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_005239613.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_005239614.1	binds 5S rRNA along with protein L5 and L25
YP_005239615.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_005239616.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_005239617.1	similar to Escherichia coli 30S ribosomal subunit protein S14 (AAC76332.1)
YP_005239618.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_005239619.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_005239620.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_005239621.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_005239622.1	one of the stabilizing components for the large ribosomal subunit
YP_005239623.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_005239624.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_005239625.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_005239626.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_005239627.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_005239628.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_005239629.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_005239630.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_005239631.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_005239632.1	similar to Escherichia coli leader peptidase; integral membrane protein (AAC76360.1)
YP_005239633.1	bacterioferritin; BFR; cytochrome B-1; cytochrome B-557 (SW:BFR_SALTY); iron storage homoprotein
YP_005239634.1	regulatory or redox component complexing with Bfr in iron storage and mobility (SW:BFD_SALTY)
YP_005239636.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_005239637.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_005239638.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_005239639.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_005239640.1	with TusACD and E is part of a sulfur transfer system which is required for synthesis of 2-thiouridine 5-methylaminomethyl-2-thiouridine at tRNA wobble positions; TusBCD acts as a sulfur mediator
YP_005239642.1	putative ACR involved in intracellular sulfur reduction
YP_005239644.1	rotamase
YP_005239645.1	similar to Escherichia coli host factor for lysis of phiX174 infection (AAC76373.1)
YP_005239646.1	rotamase
YP_005239648.1	involved in potassium efflux
YP_005239649.1	required for KefB activity
YP_005239651.1	similar to Escherichia coli putative ATP-binding component (AAC76377.1); contains duplicated ATPase domain
YP_005239654.1	alpha/beta-hydrolase fold
YP_005239656.1	similar to Escherichia coli probable phosphoribulokinase (AAC76380.1)
YP_005239659.1	complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons
YP_005239661.1	DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate
YP_005239662.1	aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity
YP_005239663.1	cell filamentation protein Fic (SW:FIC_SALTY); stationary phase induced gene; affects cell division
YP_005239664.1	hypothetical 6.8 kDa protein in fic-ppiA intergenic region (SW:YHFG_SALTY)
YP_005239665.1	peptidyl-prolyl cis-trans isomerase A (SW:PPIA_SALTY); rotamase A
YP_005239667.1	similar to Escherichia coli putative transport (AAC76389.1); MFS family
YP_005239669.1	similar to Escherichia coli nitrite reductase-NAD(P)H subunit (AAC76390.1)
YP_005239670.1	involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations
YP_005239672.1	member of the FNT family of formate and nitrite transporters
YP_005239673.1	multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin
YP_005239674.1	putative surface-exposed virulence protein BigA (gi|5081595)
YP_005239675.1	transposase for insertion sequence element is200 (SW:T200_SALTY)
YP_005239679.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_005239680.1	catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate
YP_005239681.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_005239682.1	DNA adenine methylase (SW:DMA_SALTY)
YP_005239683.1	similar to Escherichia coli putative membrane protein; overproduction may interfere with cell division (AAC76413.1)
YP_005239684.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_005239685.1	type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_005239686.1	outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa
YP_005239691.1	bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits
YP_005239692.1	ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose
YP_005239694.1	similar to Escherichia coli putative dehydrogenase (AAC76423.1)
YP_005239695.1	similar to Escherichia coli putative phosphatase (AAC76424.1)
YP_005239696.1	predicted small RNA-binding protein
YP_005239697.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_005239698.1	similar to Escherichia coli putative transport (AAC76427.1)
YP_005239701.1	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
YP_005239702.1	membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR
YP_005239703.1	part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation
YP_005239704.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_005239707.1	similar to Escherichia coli ferrous iron transport protein A (AAC76433.1)
YP_005239708.1	cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake
YP_005239712.1	Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis
YP_005239713.1	involved in high-affinity gluconate transport
YP_005239714.1	cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source
YP_005239716.1	similar to Escherichia coli high-affinity transport of gluconate/gluconate permease (AAC76440.1); GntP family; GNT I system
YP_005239717.1	amylomaltase; acts to release glucose from maltodextrins
YP_005239718.1	similar to Escherichia coli maltodextrin phosphorylase (AAC76442.1)
YP_005239720.1	Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides
YP_005239722.1	similar to Escherichia coli damage-inducible protein J (AAC73330.1)
YP_005239723.1	catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester
YP_005239727.1	similar to Escherichia coli putative 2-component regulator (AAC76447.1); sigma N; sigma 54-dependent regulator of rtcBA expression; EBP family
YP_005239728.1	represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism
YP_005239730.1	protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity
YP_005239731.1	belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine
YP_005239732.1	in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane
YP_005239735.1	forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone
YP_005239736.1	similar to Escherichia coli putative dehydratase (AAC73372.1)
YP_005239737.1	similar to Escherichia coli putative lyase/synthase (AAC73371.1)
YP_005239738.1	similar to Escherichia coli putative regulator (AAC75308.1)
YP_005239739.1	similar to Escherichia coli glycogen phosphorylase (AAC76453.1)
YP_005239740.1	catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose
YP_005239741.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_005239742.1	catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen
YP_005239743.1	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_005239745.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_005239748.1	similar to Escherichia coli low-affinity gluconate transport permease protein, interrupted (AAC76461.1)
YP_005239749.1	thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate
YP_005239750.1	similar to Escherichia coli regulator of gluconate operon (AAC76463.1); gntUKR (GalR/LacI familiy
YP_005239752.1	similar to Escherichia coli putative regulator (AAC76465.1)
YP_005239755.1	YhhY; regulated by the fur regulator; unknown function
YP_005239756.1	ORF408 (gi|4456874); regulator of sugar metabolism
YP_005239757.1	ORF 245 (gi|4456875); similar to STM1381
YP_005239759.1	similar to Escherichia coli putative hydrolase (AAC76404.1)
YP_005239760.1	periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides
YP_005239763.1	hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate
YP_005239764.1	part of the UgpABCE glycerol-3-phosphate uptake system
YP_005239765.1	with UgpABC is involved in uptake of glycerol-3-phosphate
YP_005239766.1	with UgpEC is involved in the uptake of glycerol-3-phosphate
YP_005239767.1	with UgpACE is involved in the uptake of glycerol-3-phosphate
YP_005239768.1	similar to death-on-curing protein of phage P1
YP_005239769.1	hypothetical protein in livF 5'region (SW:YHHV_SALTY)
YP_005239770.1	with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_005239771.1	Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_005239772.1	Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_005239773.1	LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter
YP_005239774.1	leucine-specific binding protein precursor; LS-BP (SW:LIVK_SALTY); ABC superfamily binding protein
YP_005239778.1	leu/ile/val/thr-binding protein precursor; LIVT-BP (SW:LIVJ_SALTY); ABC superfamily binding protein
YP_005239779.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters
YP_005239781.1	putative ABC transporter, membrane protein
YP_005239782.1	putative ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions
YP_005239783.1	signal recognition protein receptor; functions in the targeting and insertion of membrane proteins
YP_005239784.1	catalyzes the methylation of 16S rRNA at position G966
YP_005239786.1	similar to Escherichia coli putative receptor (AAC76492.1)
YP_005239787.1	similar to Escherichia coli putative enzyme (AAC76493.1)
YP_005239788.1	P-type ATPase involved in the export of lead, cadmium, zinc and mercury
YP_005239789.1	methyl-accepting chemotaxis citrate transducer (citrate chemoreceptorprotein) (SW:MCPC_SALTY)
YP_005239790.1	Deletion of this protein in E. coli causes cell filamentation, may be a modulator of cell division
YP_005239793.1	similar to Escherichia coli putative transport (AAC76498.1); MFS family
YP_005239794.1	PerM family
YP_005239796.1	Inhibits transcription at high concentrations of nickel
YP_005239797.1	similar to Escherichia coli putative transporter (AAC76510.1); putative ABC superfamily; ATP-binding/membrane transport protein
YP_005239798.1	similar to Escherichia coli putative ATP-binding component of a transport system; fragment 1 (AAC76511.1); permease component
YP_005239799.1	similar to Escherichia coli putative membrane protein (AAC76512.1)
YP_005239802.1	similar to Escherichia coli low-affinity phosphate transport (AAC76518.1); PiT family
YP_005239803.1	ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress
YP_005239804.1	similar to Escherichia coli universal stress protein; broad regulatory function (AAC76520.1)
YP_005239805.1	member of the POT family of peptide transporters; probable proton-dependent peptide transporter function
YP_005239806.1	predicted SAM-dependent methyltransferase
YP_005239807.1	oligopeptidase A (SW:OPDA_SALTY)
YP_005239811.1	catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense
YP_005239812.1	similar to Escherichia coli periplasmic L-asparaginase II (AAC75994.1)
YP_005239813.1	functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB
YP_005239814.1	similar to Escherichia coli putative kinase (AAC76399.1); ribokinase family
YP_005239815.1	similar to Escherichia coli putative transport protein (AAC76396.1)
YP_005239816.1	similar to Escherichia coli putative transcriptional regulator (AAC76400.1); GntR family
YP_005239818.1	cytoplasmic; catalyzes the hydrolysis of trehalose to glucose
YP_005239822.1	similar to Escherichia coli putative regulator (AAC76545.1); LuxR/UhpA family
YP_005239825.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76546.1); LysR family
YP_005239828.1	similar to Escherichia coli putative transport protein (AAC76548.1); MFS family
YP_005239830.1	in Escherichia coli this protein is involved in flagellar function
YP_005239832.1	similar to Escherichia coli ketodeoxygluconokinase (AAC76551.1)
YP_005239833.1	protein YhjJ precursor (SW:YHJJ_SALTY)
YP_005239835.1	involved in the transport of C4-dicarboxylates across the membrane
YP_005239837.1	HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a putative phosphodiesterase protein from E. coli
YP_005239839.1	cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA
YP_005239840.1	catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans
YP_005239841.1	binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP)
YP_005239842.1	polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis
YP_005239846.1	similar to Escherichia coli putative protease (AAC76561.1)
YP_005239852.1	similar to Escherichia coli putative transporter protein (AAC76564.1); HAAAP family
YP_005239853.1	Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides
YP_005239854.1	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF
YP_005239855.1	similar to Escherichia coli dipeptide transport system permease protein 2 (AAC76567.1); ABC superfamily membrane protein
YP_005239856.1	transports peptides consisting of two or three amino acids
YP_005239858.1	similar to Escherichia coli dipeptide transport protein (AAC76569.1); ABC superfamily periplasmic protein
YP_005239859.1	similar to Escherichia coli putative permease (AAC75926.1)
YP_005239860.1	contains putative PQQ enzyme repeat
YP_005239863.1	similar to Escherichia coli regulator for rbs operon (AAC76776.1); LacI family
YP_005239864.1	catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide
YP_005239865.1	PFE protein precursor (SW:LPFE_SALTY)
YP_005239866.1	outer membrane usher protein LpfC precursor (SW:LPFC_SALTY)
YP_005239867.1	chaperone protein LpfB precursor (SW:LPFB_SALTY)
YP_005239868.1	long polar fimbrial protein A precursor (SW:LPFA_SALTY)
YP_005239870.1	similar to Escherichia coli putative lipase (AAC76572.1)
YP_005239871.1	constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine
YP_005239873.1	similar to Escherichia coli biotin sulfoxide reductase (AAC76575.1)
YP_005239875.1	similar to Escherichia coli putative outer membrane protein (AAC76576.1)
YP_005239877.1	Involved in the metabolism of aromatic amino acids
YP_005239880.1	cold shock protein CspA (SW:CSPA_SALTY); 7.4 kDa; transcriptional activator of hns
YP_005239886.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_005239887.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_005239893.1	similar to Escherichia coli xylulokinase (AAC76588.1)
YP_005239894.1	catalyzes the interconversion of D-xylose to D-xylulose
YP_005239897.1	similar to Escherichia coli putative regulator of xyl operon (AAC76593.1); AraC/XylS family
YP_005239898.1	similar to Escherichia coli putative ATP-binding protein (AAC76594.1)
YP_005239900.1	periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds
YP_005239901.1	transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis
YP_005239903.1	similar to Escherichia coli putative regulator (AAC76598.1); IclR family
YP_005239905.1	NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate
YP_005239906.1	similar to Escherichia coli putative lipase (AAC76600.1)
YP_005239907.1	similar to CheA
YP_005239908.1	membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO
YP_005239909.1	similar to Escherichia coli putative membrane protein (AAC76602.1); DedA family
YP_005239910.1	similar to Escherichia coli putative solute-binding transport protein (AAC76603.1)
YP_005239911.1	similar to Escherichia coli L-xylulose kinase (AAC76604.1); cryptic
YP_005239912.1	catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate
YP_005239913.1	L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate
YP_005239914.1	catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
YP_005239915.1	similar to Escherichia coli putative AraC-type regulatory protein (AAC76936.1); AraC family; helix-turn-helix
YP_005239918.1	similar to Escherichia coli aldehyde dehydrogenase B; lactaldehyde dehydrogenase (AAC76612.1)
YP_005239919.1	similar to Escherichia coli possible NagC-like transcriptional regulator (AAC73497.1)
YP_005239920.1	similar to Escherichia coli selenocysteinyl-tRNA-specific translation factor (AAC76614.1)
YP_005239921.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_005239922.1	similar to Escherichia coli putative S-transferase (AAC76616.1)
YP_005239923.1	similar to Escherichia coli PTS system; mannitol-specific enzyme IIABC components (AAC76623.1); PTS family
YP_005239924.1	similar to Escherichia coli mannitol-1-phosphate dehydrogenase (AAC76624.1)
YP_005239925.1	Acts as a repressor of the mtlAD operon
YP_005239930.1	similar to Escherichia coli putative membrane protein (AAC74454.1)
YP_005239931.1	similar to Escherichia coli L-lactate permease (AAC76627.1)
YP_005239932.1	represses the lctPRD operon
YP_005239933.1	flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration
YP_005239934.1	member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates
YP_005239935.1	similar to Escherichia coli L-idonate transcriptional regulator (AAC77221.1)
YP_005239937.1	similar to Escherichia coli starvation-sensing protein (AAC74653.1); muconate lactonizing enzyme family
YP_005239938.1	similar to Escherichia coli putative transport protein (AAC75831.1)
YP_005239939.1	catalyzes the O-acetylation of serine
YP_005239940.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_005239941.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_005239942.1	similar to Escherichia coli glutaredoxin 3 (AAC76634.1)
YP_005239944.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_005239945.1	similar to Escherichia coli putative membrane protein (AAC76637.1)
YP_005239947.1	similar to Escherichia coli putative regulator (AAC76639.1)
YP_005239949.1	converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism
YP_005239950.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_005239951.1	catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose
YP_005239952.1	catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core
YP_005239953.1	lipopolysaccharide heptosyltransferase-1 (SW:RFAC_SALTY)
YP_005239954.1	O-antigen ligase (SW:RFAL_SALTY)
YP_005239955.1	lipopolysaccharide 1,2-N-acetylglucosaminetransferase (SW:RFAK_SALTY); lipopolysaccharide core biosynthetic protein
YP_005239956.1	lipopolysaccharide core biosynthetic protein RfaZ (SW:RFAZ_SALTY)
YP_005239957.1	lipopolysaccharide core biosynthesis protein RfaY (SW:RFAY_SALTY); modification of heptose region of the core
YP_005239958.1	UDP-D-glucose/galactosyl; lipopolysaccharide 1,2-glucosyltransferase (SW:RFAJ_SALTY)
YP_005239959.1	UDP-D-galactose/glucosyl; lipopolysaccharide 1,3-galactosyltransferase (SW:RFAI_SALTY)
YP_005239960.1	UDP-D-galactose/(glucosyl; lipopolysaccharide 1,6-galactosyltransferase (SW:RFAB_SALTY)
YP_005239961.1	hypothetical 9.0 kDa protein in rfaB-rfaP intergenic region (SW:YIBR_SALTY)
YP_005239962.1	lipopolysaccharide core biosynthetic protein RfaP (SW:RFAP_SALTY); phosphorylation of core heptose
YP_005239963.1	similar to Escherichia coli glucosyltransferase I; lipopolysaccharide core biosynthesis (AAC76655.1)
YP_005239964.1	similar to Escherichia coli lipopolysaccharide core biosynthetic protein (AAC76656.1); modification of heptose region of core
YP_005239966.1	catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A
YP_005239967.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_005239968.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_005239969.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_005239970.1	required for 70S ribosome assembly
YP_005239971.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_005239972.1	Catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine.
YP_005239973.1	catalyzes the formation of dUMP from dUTP
YP_005239974.1	FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly
YP_005239975.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_005239976.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_005239978.1	similar to Escherichia coli putative alpha helix protein (AAC76668.1)
YP_005239979.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73730.1); LysR family
YP_005239980.1	similar to glyoxylases
YP_005239983.1	this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+
YP_005239985.1	Essential for recycling GMP and indirectly, cGMP
YP_005239986.1	promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_005239987.1	similar to Escherichia coli (p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (AAC76674.1)
YP_005239988.1	specifically modifies tRNA at position G18
YP_005239989.1	catalyzes branch migration in Holliday junction intermediates
YP_005239991.1	similar to Escherichia coli glutamate transport (AAC76677.1); GltS family
YP_005239993.1	similar to Escherichia coli putative transport protein (AAC76678.1); NCS2 family
YP_005239995.1	catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides
YP_005239996.1	may be involved in the transport of galactosides-pentoses-hexuronides
YP_005240001.1	similar to putative ATP binding protein SugR (gi|4324607)
YP_005240002.1	similar to putative ATP binding protein SugR (gi|4324607)
YP_005240003.1	RhuM (gi|4324608)
YP_005240004.1	RmbA (gi|4324609)
YP_005240005.1	MisL (gi|4324610); similar to AIDA-I autotransporter; member of IgA1 family of proteases; outer membrane protein
YP_005240006.1	FidL (gi|4324611)
YP_005240007.1	putative transcriptional regulator MarT (gi|4324612); similar to Vibrio cholerae ToxR
YP_005240009.1	SlsA (gi|4324613); similar to STM0950
YP_005240011.1	CigR (gi|4324614)
YP_005240013.1	Mg(2+) transport ATPase, P-type 2 (SW:ATMB_SALTY); cotranscribed with mgtC
YP_005240015.1	Mg(2+) transport ATPase protein C (SW:ATMC_SALTY); reqired for intracmacrophage survival and growth in low calcium; cotranscribed with mgtB and transcriptionally controlled by PhoP/PhoQ system
YP_005240018.1	hypothetical protein in selC 3'region (SW:YICL_SALTY); integral membrane protein
YP_005240021.1	L-seryl-tRNA selenium transferase
YP_005240022.1	similar to Escherichia coli PTS enzyme IID; mannose-specific (AAC74889.1)
YP_005240023.1	similar to Escherichia coli PTS system N-acetylgalactosamine-specific IIC component 1 (AAC76173.1)
YP_005240024.1	similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1)
YP_005240027.1	similar to Escherichia coli psp operon transcriptional activator (AAC74385.1); NtrC family; contains ATPase domain
YP_005240031.1	similar to Escherichia coli 6-phospho-beta-glucosidase; cryptic (AAC75758.1)
YP_005240032.1	experimental results in Escherichia coli suggest that this gene encodes an inosine export protein; member of major facilitator superfamily; MFS
YP_005240034.1	helix-turn-helix
YP_005240035.1	similar to Escherichia coli PTS system protein HPr (AAC75468.1)
YP_005240036.1	class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis
YP_005240037.1	similar to Escherichia coli L-fuculokinase (AAC75845.1); pentulose and hexulose
YP_005240038.1	similar to Escherichia coli PTS system galactitol-specific enzyme IIC (AAC75153.1)
YP_005240039.1	similar to Escherichia coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1)
YP_005240040.1	similar to Escherichia coli galactitol-specific enzyme IIA of phosphotransferase system (AAC75155.1)
YP_005240041.1	similar to Escherichia coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); GntR family
YP_005240045.1	cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate
YP_005240046.1	membrane protein regulates uhpT expression
YP_005240047.1	Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph
YP_005240048.1	response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter
YP_005240050.1	similar to Escherichia coli fucose permease (AAC75843.1)
YP_005240051.1	similar to Escherichia coli ribokinase (AAC76775.1); ribokinase family
YP_005240052.1	similar to Escherichia coli transcriptional repressor for deo operon, tsx, nupG (AAC73927.1); DeoR family
YP_005240053.1	with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit
YP_005240054.1	catalyzes the formation of 2-acetolactate from pyruvate
YP_005240056.1	similar to Escherichia coli ilvB operon leader peptide (AAC76695.1)
YP_005240061.1	multidrug efflux protein involved in adaptation to low energy shock
YP_005240063.1	regulates the synthesis and expression of the dsdXA operon and dadA gene
YP_005240065.1	member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function
YP_005240066.1	catalyzes the formation of pyruvate from serine
YP_005240067.1	similar to Escherichia coli putative transcriptional regulator (AAC76697.1)
YP_005240071.1	similar to Escherichia coli putative transport protein (AAC76708.1)
YP_005240073.1	16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent
YP_005240074.1	with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress
YP_005240078.1	similar to Escherichia coli possible subunit of heme lyase (AAC75254.1); involved in cytochrome c-type biogenesis
YP_005240079.1	similar to Escherichia coli disulfide oxidoreductase; biogenesis of cytochrome c (AAC75255.1)
YP_005240080.1	similar to Escherichia coli cytochrome c-type biogenesis protein (AAC75256.1)
YP_005240081.1	CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane
YP_005240082.1	similar to Escherichia coli heme exporter protein C (AAC75258.1); cytochrome c-type biogenesis protein
YP_005240083.1	similar to Escherichia coli heme exporter protein C (AAC75259.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein
YP_005240084.1	similar to Escherichia coli heme exporter protein B cytochrome c-type biogenesis protein (AAC75260.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein
YP_005240085.1	ATP-binding protein; required for proper cytochrome c maturation
YP_005240086.1	similar to Escherichia coli putative cytochrome C peroxidase  (AAC76543.1)
YP_005240087.1	TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor
YP_005240088.1	similar to Escherichia coli trimethylamine N-oxide reductase subunit (AAC74082.1)
YP_005240089.1	similar to Escherichia coli trimethylamine N-oxide reductase; cytochrome c-type subunit (AAC74081.1); also has activity as negativer regulator of tor operon
YP_005240090.1	response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes
YP_005240091.1	similar to Escherichia coli sensor protein involved in regulation of tor operon; periplasmic (AAC74079.1); protein in multi-component regulatory system with sensory kinase TorS and regulator TorR
YP_005240092.1	Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide
YP_005240093.1	similar to Escherichia coli D-galactonate transport (AAC76714.1); MFS family
YP_005240094.1	similar to Escherichia coli 2-oxo-3-deoxygalactonate 6-phosphate aldolase/galactonate dehydratase (AAC76715.1)
YP_005240095.1	similar to Escherichia coli 2-oxo-3-deoxygalactonate kinase (AAC76716.1)
YP_005240096.1	similar to Escherichia coli regulator protein for dgo operon (AAC76718.1); GntR family
YP_005240097.1	YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins
YP_005240098.1	similar to Escherichia coli putative transport protein (AAC75831.1)
YP_005240099.1	similar to Escherichia coli starvation-sensing protein (AAC74653.1); muconate lactonizing enzyme family
YP_005240100.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73855.1); LysR family
YP_005240101.1	negatively supercoils closed circular double-stranded DNA
YP_005240102.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_005240104.1	binds the polymerase to DNA and acts as a sliding clamp
YP_005240105.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_005240107.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_005240108.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_005240110.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_005240111.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_005240113.1	RNA-dependent DNA polymerase
YP_005240114.1	Confers resistance to chloramphenicol
YP_005240115.1	Involved in anaerobic NO protection
YP_005240118.2	similar to Escherichia coli putative membrane/transport protein (AAC76737.1); xanthine/uracil permeases family
YP_005240119.1	YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily
YP_005240120.1	regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon
YP_005240121.1	similar to Escherichia coli ATP-binding component of high-affinity phosphate-specific transport system (AAC76748.1); ABC superfamily ATP-binding protein
YP_005240122.1	Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_005240123.1	part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_005240124.1	similar to Escherichia coli high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein (AAC76751.1); ABC superfamily binding protein
YP_005240125.1	similar to Escherichia coli PTS system; fructose-specific transport protein (AAC75228.1)
YP_005240126.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_005240127.1	similar to Escherichia coli putative transport protein (AAC73180.1)
YP_005240128.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6Pusing glutamine as a nitrogen source
YP_005240129.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_005240132.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_005240133.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_005240134.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_005240135.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_005240136.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_005240137.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_005240138.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_005240139.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_005240140.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation
YP_005240142.1	probable SAM-dependent methyltransferase
YP_005240143.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_005240144.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_005240145.1	transcriptional repressor of asnA which codes for aspartate-ammonia ligase
YP_005240146.1	catalyzes the formation of asparagine from aspartate and ammonia
YP_005240147.1	contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA
YP_005240148.1	interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase
YP_005240149.1	Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH
YP_005240150.1	cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source
YP_005240151.1	with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain
YP_005240152.1	functions to transport ribose at high affinity; forms a complex with RbsA2C2B
YP_005240153.1	periplasmic substrate-binding component of the ATP-dependent ribose transport system
YP_005240154.1	catalyzes the formation of D-ribose 5-phosphate from ribose
YP_005240155.1	DNA-binding transcriptional repressor of ribose metabolism
YP_005240156.1	similar to Escherichia coli putative transport protein (AAC76777.1); MFS family; 1st module
YP_005240157.1	GntR family
YP_005240158.1	Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon
YP_005240159.1	LysR type regulator; with pssR
YP_005240160.1	among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function
YP_005240162.1	ilvGmedA operon leader peptide; attenuator peptide (SW:LPID_ECOLI)
YP_005240163.1	catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit
YP_005240164.1	similar to Escherichia coli acetolactate synthase II; valine insensitive (AAC77489.1)
YP_005240165.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_005240166.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_005240167.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_005240170.1	participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate
YP_005240171.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_005240172.1	similar to Escherichia coli peptidyl-prolyl cis-trans isomerase C; rotamase C (AAC76780.1)
YP_005240174.1	similar to Escherichia coli required for NMN transport (AAC73838.1)
YP_005240175.1	single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication
YP_005240176.1	catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation
YP_005240177.1	enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation
YP_005240178.1	thioredoxin 1; TRX1; TRX (SW:THIO_ECOLI); redox factor
YP_005240179.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_005240180.1	similar to Escherichia coli UDP-GlcNAc-undecaprenylphosphate GlcNAc-1-phosphate transferase; synthesis of enterobacterial common antigen; ECA (AAC76789.1)
YP_005240181.1	Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein
YP_005240182.1	similar to Escherichia coli UDP-N-acetyl glucosamine-2-epimerase; synthesis of enterobacterial common antigen; ECA (AAC76791.1)
YP_005240183.1	catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid
YP_005240184.1	similar to Escherichia coli dTDP-glucose 4,6-dehydratase (AAC76793.1)
YP_005240185.1	similar to Escherichia coli glucose-1-phosphate thymidylyltransferase (AAC76794.1)
YP_005240187.1	catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis
YP_005240188.1	similar to Escherichia coli putative cytochrome (AAC76797.1); involved in LPS biosynthesis
YP_005240189.1	catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis
YP_005240190.1	probable 4-alpha-L-fucosyltransferase (SW:WECF_SALTY)
YP_005240191.1	probable UDP-N-acetyl-D-mannosaminuronic acid transferase (SW:WECG_SALTY)
YP_005240192.1	uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function
YP_005240194.1	similar to Escherichia coli protein involved in a late step of protoheme IX synthesis (AAC76805.1)
YP_005240195.1	similar to Escherichia coli uroporphyrinogen III methylase (AAC76806.1)
YP_005240196.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis
YP_005240197.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_005240199.1	catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP
YP_005240204.1	defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly
YP_005240207.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_005240208.1	hypothetical protein in dapF-xerC intergenic region (SW:YIGA_SALTY)
YP_005240209.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_005240210.1	YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function
YP_005240211.1	unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.
YP_005240213.1	responsible for the influx of magnesium ions
YP_005240214.1	hypothetical 14.6 kDa protein in corA-rarD intergenic region (SW:YIGF_SALTY)
YP_005240217.1	hypothetical protein in rarD-pldA intergenic region (SW:YIGI_SALTY); possibly involved in aromatic compounds catabolism; PaaI
YP_005240219.1	catalyzes the hydrolysis of phosphatidylcholine
YP_005240220.1	functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway
YP_005240221.1	RhtB family
YP_005240223.1	lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates
YP_005240224.1	purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium
YP_005240226.1	transcriptional activator protein metR (SW:METR_SALTY); LysR family
YP_005240228.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_005240231.1	similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1)
YP_005240232.1	similar to Escherichia coli putative enzyme (AAC76833.1)
YP_005240233.1	catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway
YP_005240234.1	YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner
YP_005240235.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_005240237.1	an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions
YP_005240238.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_005240239.1	mediates the export of protein precursors bearing twin-arginine signal peptides
YP_005240240.1	integral membrane protein
YP_005240241.1	magnesium dependent; not involved in the Sec-independent protein export system
YP_005240242.1	similar to Escherichia coli transcriptional activator that affects biosynthesis of lipopolysaccharide core, F pilin, and haemolysin (AAC76845.1); responsible for full expression of operons rfa, rfb, hly, tra, chu, cps, and kps; may suppress operon polarity
YP_005240244.1	catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol
YP_005240245.1	NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide
YP_005240247.1	FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids
YP_005240248.1	includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids
YP_005240249.1	catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters
YP_005240251.1	similar to Escherichia coli potassium uptake, requires TrkE (AAC76852.1); Trk family
YP_005240252.1	catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX
YP_005240256.1	similar to Escherichia coli molybdopterin-guanine dinucleotide biosynthesis protein B (AAC76854.1); GTP-binding
YP_005240257.1	Links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis
YP_005240259.1	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages
YP_005240260.1	thiol-disulfide interchange protein DabA precursor (SW:DSBA_SALTY)
YP_005240261.1	similar to Escherichia coli putative endonuclease (AAC76860.1)
YP_005240263.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_005240265.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_005240267.1	hypothetical 19.2 kDa protein in polA-hemN intergenic region (SW:YIHI_SALTY)
YP_005240268.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_005240270.1	response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54
YP_005240271.1	sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation
YP_005240273.1	forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme
YP_005240275.1	similar to Escherichia coli putative GTP-binding factor (AAC76868.1)
YP_005240276.1	similar to Escherichia coli putative phosphatase (AAC73853.1)
YP_005240278.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_005240282.1	porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown
YP_005240283.1	similar to Escherichia coli putative permease (AAC76873.1)
YP_005240284.1	similar to Escherichia coli putative permease (AAC76874.1)
YP_005240285.1	similar to Escherichia coli putative glycosidase (AAC76875.1)
YP_005240286.1	similar to Escherichia coli putative aldose-1-epimerase  (AAC76876.1)
YP_005240288.1	similar to Escherichia coli putative aldolase (AAD13443.1)
YP_005240289.1	similar to Escherichia coli putative dehydrogenase (AAD13444.1)
YP_005240291.1	similar to Escherichia coli putative kinase (AAD13445.1)
YP_005240292.1	similar to Escherichia coli putative DeoR-type transcriptional regulator (AAD13446.1); DeoR family
YP_005240293.1	similar to Escherichia coli putative phosphatase (AAD13447.1)
YP_005240294.1	RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease
YP_005240295.1	Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine
YP_005240296.1	similar to Escherichia coli putative acetyltransferase  (AAD13450.1)
YP_005240299.1	similar to Escherichia coli putative lipase (AAC73578.1)
YP_005240301.1	merR family
YP_005240302.1	required for the formation of active formate dehydrogenase
YP_005240303.1	cytochrome b556(FDO) component; heme containing
YP_005240304.1	similar to Escherichia coli formate dehydrogenase-O iron-sulfur subunit (AAD13455.1); Fe-S subunit
YP_005240305.1	similar to Escherichia coli formate dehydrogenase-O major subunit (AAD13456.1)
YP_005240306.1	involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth
YP_005240316.2	similar to Escherichia coli putative oxidoreductase (AAC76613.1); iron-containing
YP_005240317.1	similar to Escherichia coli rhamnulose-phosphate aldolase (AAC76884.1)
YP_005240318.1	catalyzes the formation of L-rhamnulose from L-rhamnose
YP_005240319.1	catalyzes the ATP-dependent phosphorylation of rhamnulose
YP_005240322.1	activates the expression of the rhaBAD operon and rhaT gene
YP_005240323.1	activates the expression of rhaRS in response to L-rhamnose
YP_005240324.1	transports L-rhamnose and L-lyxose into the cell
YP_005240327.1	hypothetical 15.6 kDa protein in RhaT 5'region (SW:YIIY_SALTY)
YP_005240328.1	similar to Escherichia coli putative membrane protein (AAC76602.1)
YP_005240330.1	hypothetical protein in sodA 5'region (SW:YIIZ_SALTY)
YP_005240331.1	SodA; manganese binding; only present under aerobic conditions; destroys free radicals
YP_005240334.1	part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors
YP_005240335.1	response regulator in two-component regulatory system with CpxA; part of the envelope stress response system
YP_005240336.1	repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates
YP_005240337.1	member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers
YP_005240338.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_005240340.1	sulfate-binding protein (SW:SUBI_SALTY); ABC superfamily binding protein
YP_005240341.2	CDP-diacylglycerol pyrophosphatase (SW:CDH_SALTY)
YP_005240343.1	phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least
YP_005240345.1	similar to Escherichia coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); GntR family
YP_005240347.1	similar to Escherichia coli CDP-diacylglycerol phosphotidylhydrolase (AAC76900.1)
YP_005240349.1	similar to Escherichia coli putative kinase (AAC74584.1)
YP_005240350.1	similar to Escherichia coli putative transcriptional regulator, sorC family (AAC74585.1)
YP_005240352.1	similar to Escherichia coli putative ATP-binding component of a transport system (AAC74586.1)
YP_005240353.1	similar to Escherichia coli putative transport system permease protein (AAC74587.1); putative ABC superfamily membrane protein
YP_005240354.1	similar to Escherichia coli putative transport system permease protein (AAC74588.1); putative ABC superfamily membrane protein
YP_005240355.1	similar to Escherichia coli putative LacI-type transcriptional regulator (AAC74589.1); putative ABC superfamily periplasmic protein
YP_005240358.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_005240359.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_005240363.1	similar to Escherichia coli ferredoxin-NADP reductase (AAC76906.1)
YP_005240364.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_005240365.1	Converts glycerol and ADP to glycerol-3-phosphate and ADP
YP_005240366.1	similar to Escherichia coli facilitated diffusion of glycerol (AAC76909.1); MIP channel
YP_005240370.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_005240371.1	catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate
YP_005240372.1	heat shock protein involved in degradation of misfolded proteins
YP_005240373.1	heat shock protein involved in degradation of misfolded proteins
YP_005240374.1	similar to Escherichia coli essential cell division protein (AAC76915.1)
YP_005240375.1	negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins
YP_005240376.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_005240377.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_005240380.1	when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis
YP_005240381.1	catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine
YP_005240382.1	multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways
YP_005240383.1	similar to Escherichia coli putative transport protein (AAC75961.1)
YP_005240386.1	similar to Escherichia coli UDP-sugar hydrolase (AAC73582.1); similar to esterase
YP_005240388.1	MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor
YP_005240389.1	peroxidase/catalase HPI (SW:CATA_SALTY)
YP_005240392.1	forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone
YP_005240393.1	similar to transaldolase from Escherichia coli; many organisms have multiple copies
YP_005240394.1	similar to Escherichia coli PEP-protein phosphotransferase system enzyme I (AAC76929.1); general PTS family; enzyme I
YP_005240396.1	FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site
YP_005240397.1	FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS
YP_005240398.1	involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein
YP_005240399.1	similar to Escherichia coli probable pyruvate formate lyase activating enzyme 2 (AAC76934.1)
YP_005240400.1	FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog
YP_005240401.1	similar to Escherichia coli putative AraC-type regulatory protein (AAC76936.1); AraC/XylS family
YP_005240406.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_005240407.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis
YP_005240408.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_005240409.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_005240410.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_005240411.1	Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA
YP_005240412.1	catalyzes the conversion of NADPH to NADH
YP_005240414.1	negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis
YP_005240416.1	catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs
YP_005240417.1	involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space
YP_005240418.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_005240420.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_005240421.1	catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon
YP_005240422.1	catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis
YP_005240424.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_005240426.1	forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_005240427.1	Modulates Rho-dependent transcription termination
YP_005240428.1	binds directly to 23S ribosomal RNA
YP_005240429.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_005240430.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_005240431.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_005240432.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_005240433.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_005240441.1	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center
YP_005240442.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_005240443.1	with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate
YP_005240444.1	catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate
YP_005240445.1	catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate
YP_005240446.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_005240447.1	binds specifically to the major sigma factor sigma 70; active in stationary phase
YP_005240448.1	can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates
YP_005240449.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_005240450.1	Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures
YP_005240452.1	histone-like DNA-binding protein
YP_005240455.1	sensor protein HydA (SW:HYDH_SALTY); in two component regulatory system with HydG
YP_005240456.1	DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein
YP_005240457.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_005240458.1	involved in de novo purine biosynthesis
YP_005240464.1	hypothetical protein in rrfE-metA intergenic region (SW:YJAB_SALTY)
YP_005240465.1	catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis
YP_005240466.1	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle
YP_005240467.1	Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates
YP_005240469.1	catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol
YP_005240471.1	regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase
YP_005240472.1	one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity
YP_005240473.1	hypothetical protein in metH-pepE intergenic region (SW:YJBB_SALTY); PNaS family
YP_005240474.1	alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family
YP_005240476.1	similar to Escherichia coli nucleoprotein/polynucleotide-associated enzyme (AAC73457.1)
YP_005240477.1	catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA
YP_005240485.1	similar to Escherichia coli putative membrane protein (AAC74454.1)
YP_005240491.1	similar to Escherichia coli putative glycan biosynthesis enzyme (AAC75410.1)
YP_005240509.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive
YP_005240510.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_005240516.1	with MalKFE is involved in the transport of maltose into the cell
YP_005240517.1	with MalKGE is involved in maltose transport into the cell
YP_005240520.1	functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis
YP_005240521.1	with malEFG is involved in import of maltose/maltodextrin
YP_005240522.1	porin involved in the transport of maltose and maltodextrins
YP_005240524.1	maltose operon periplasmic protein precursor (SW:MALM_SALTY); protein of mal regulon
YP_005240525.1	catalyzes the formation of 4-hydroxybenzoate from chorismate
YP_005240526.1	catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway
YP_005240527.1	PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA
YP_005240528.1	similar to Escherichia coli diacylglycerol kinase (AAC77012.1)
YP_005240529.1	Represses a number of genes involved in the response to DNA damage
YP_005240530.1	similar to Escherichia coli DNA-damage-inducible protein F (AAC77014.1); induced by UV and mitomycin C; SOS and lexA regulon
YP_005240532.1	unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential
YP_005240533.1	Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB
YP_005240534.1	similar to plasmid R64 TraF
YP_005240535.1	putative TIM-barrel enzyme; possibly dehydrogenases; nifR3 family
YP_005240537.1	coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia
YP_005240538.1	similar to Escherichia coli quinone oxidoreductase (AAC77021.1); NADPH-dependent
YP_005240539.1	unwinds double stranded DNA
YP_005240540.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_005240541.2	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_005240542.1	Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity
YP_005240547.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_005240549.2	binds to single stranded DNA and PriA helcase facilitate replication restart
YP_005240552.1	putative inner membrane or exported protein spi4_A (gi|7467268)
YP_005240553.1	hypothetical protein spi4_A (gi|7467268)
YP_005240554.1	similar to ABC exporter outer membrane component (gi|7467234)
YP_005240555.1	membrane permease; HlyD secretion protein (gi|7467244)
YP_005240556.1	fusion of two Salmonella typhimurium hypothetical proteins (gi|7467255) and (gi|7467255); may contain rearrangements with respect to similar proteins
YP_005240557.1	similar to leukotoxin expression protein B (gi|7467272); contains an N-terminal double-glycine peptidase domain
YP_005240562.1	regulates genes involved in response to oxidative stress
YP_005240563.1	redox-sensitive transcriptional activator SOXR (SW:SOXR_SALTY); MerR family; contains iron-sulfur center for redox-sensing
YP_005240568.1	xanthine/uracil permease family
YP_005240570.1	putative CPA1 family
YP_005240571.1	similar to Escherichia coli activator; hydrogen peroxide-inducible genes (AAC76943.1); LysR family
YP_005240573.1	similar to Escherichia coli putative seritonin transporter (AAC75203.1)
YP_005240574.1	member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake
YP_005240576.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_005240578.1	catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552
YP_005240579.1	part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia
YP_005240580.1	similar to Escherichia coli formate-dependent nitrite reductase; FeS centers (AAC77042.1)
YP_005240581.1	similar to Escherichia coli formate-dependent nitrate reductase complex; transmembrane protein (AAC77043.1)
YP_005240582.1	similar to Escherichia coli formate-dependent nitrite reductase; possible assembly function (AAD13457.1); involved in attachment of haem c to cytochrome c552
YP_005240583.1	similar to Escherichia coli protein of formate-dependent nitrite reductase complex (AAD13459.1); involved in attachment of haem c to cytochrome c552
YP_005240586.1	carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system
YP_005240588.1	contains TPR repeats
YP_005240590.1	similar to Escherichia coli selenopolypeptide subunit of formate dehydrogenase H (AAD13462.1)
YP_005240591.1	putative dioxygenase for lipid synthesis; LpxO (gi|9454389)
YP_005240592.1	PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role
YP_005240594.1	involved in phosphonate metabolism
YP_005240596.1	similar to Escherichia coli low-affinity transport system; proline permease II (AAC77072.1); MFS family
YP_005240598.1	sensor protein BasS/PmrB (SW:BASS_SALTY); in two-component regulatory system with BasR
YP_005240599.1	response regulator in two-component regulatory system with BasS
YP_005240600.1	with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division
YP_005240601.1	similar to Escherichia coli putative amino acid/amine transport protein; cryptic (AAC77076.1); APC family
YP_005240602.1	similar to Escherichia coli putative AraC-type regulatory protein (AAC77077.1); AraC/XylS family; activates aidA
YP_005240604.1	similar to Escherichia coli biodegradative arginine decarboxylase (AAC77078.1); inducible by acid
YP_005240605.2	similar to Escherichia coli regulator of melibiose operon (AAC77079.1); AraC/XylS family
YP_005240606.1	alpha-galactosidase (SW:AGAL_SALTY)
YP_005240607.1	melibiose carrier protein; thiomethylgalactoside permease; melibiose permease; Na+/Li+ melibiose symporter; melibiosetransporter (SW:MELB_SALTY); GPH family
YP_005240608.1	similar to Escherichia coli fumarase B; fumarate hydratase class I anaerobic isozyme (AAC77083.1)
YP_005240609.1	functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters
YP_005240611.1	response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration
YP_005240612.1	C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration
YP_005240613.1	similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit A (AAC73980.1)
YP_005240614.1	similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1)
YP_005240615.1	similar to Escherichia coli putative DMSO reductase anchor subunit (AAC74662.1)
YP_005240616.1	similar to Escherichia coli putative oxidoreductase component (AAC74663.1)
YP_005240622.1	LuxR family
YP_005240623.1	HilD (gi|4455108); AraC-type; contains putative DNA-binding domain
YP_005240626.1	CopG family; putative helix-turn-helix protein
YP_005240628.1	nonspecific acid phosphatase precursor (SW:PHON_SALTY)
YP_005240630.1	similar to Escherichia coli putative transcriptional regulator (AAC73589.1); MerR family
YP_005240633.1	two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm
YP_005240634.1	copper binding protein required for copper tolerance; involved in resistance toward heavy metals
YP_005240635.1	functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB
YP_005240636.1	catalyzes the formation of fumarate from aspartate
YP_005240638.1	F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein
YP_005240639.1	uncharacterized member of the APC superfamily of amino acid transporters; unknown function
YP_005240640.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_005240641.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_005240648.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_005240651.1	LuxR family
YP_005240652.1	member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations
YP_005240653.1	lipocalin; globomycin-sensitive outer membrane lipoprotein
YP_005240654.1	in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane
YP_005240655.1	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_005240656.1	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_005240657.1	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_005240658.1	lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_005240660.1	hypothetical protein in poxA-psd intergenic region (SW:YJEM_SALTY); APC family
YP_005240662.1	similar to Escherichia coli putative periplasmic binding protein (AAC77119.1)
YP_005240663.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_005240664.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_005240665.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_005240666.1	similar to Escherichia coli arginine 3rd transport system periplasmic binding protein (AAC73947.1)
YP_005240669.1	possibly involved in cell wall synthesis
YP_005240670.1	N-acetylmuramoyl-L-alanine amidase AMIB (SW:AMIB_SALTY); a murein hydrolase
YP_005240671.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_005240672.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_005240673.1	Stimulates the elongation of poly(A) tails
YP_005240674.1	involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein
YP_005240675.1	with HflC inhibits proteolysis of lambda cII protein by FtsH
YP_005240676.1	with HflK inhibits proteolysis of lambda cII protein by FtsH
YP_005240679.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_005240680.1	negatively regulates the transcription of genes upregulated by nitrosative stress
YP_005240681.1	3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs
YP_005240682.1	Specifically methylates the ribose of guanosine 2251 in 23S rRNA
YP_005240684.1	similar to Escherichia coli putative alpha helical protein (AAC77139.1); IM30; suppresses sigma54-dependent transcription
YP_005240685.1	similar to eukaryotic potassium channels
YP_005240689.1	similar to Escherichia coli putative synthetase/amidase (AAC77143.1)
YP_005240690.1	catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA
YP_005240693.1	YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo
YP_005240694.1	negative regulator of ulaG and ulaABCDEF
YP_005240695.1	contains beta-lactamase fold
YP_005240696.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_005240697.1	sga subunit
YP_005240698.1	similar to Escherichia coli putative PTS system enzyme II A component (AAC77152.1); sga subunit
YP_005240699.1	catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization
YP_005240700.1	UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway
YP_005240701.1	catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
YP_005240706.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_005240707.1	binds single-stranded DNA at the primosome assembly site
YP_005240708.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_005240709.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_005240712.1	FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
YP_005240713.1	involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine
YP_005240714.1	Involved in anaerobic NO protection and iron metabolism
YP_005240715.1	similar to Escherichia coli putative transmembrane subunit (AAC77167.1)
YP_005240716.1	similar to Escherichia coli putative oxidoreductase (AAC77168.1)
YP_005240718.1	periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate
YP_005240720.1	CysQ protein (SW:CYSQ_SALTY); affects pool of 3'-phosphoadenosine-5'-phosphosulfate in pathway of sulfite synthesis
YP_005240724.1	similar to Escherichia coli putative transport protein (AAC77175.1)
YP_005240725.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_005240730.1	similar to Escherichia coli D-galactonate transport (AAC76714.1)
YP_005240731.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_005240732.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_005240733.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_005240735.1	similar to Escherichia coli putative ligase (AAC77190.1)
YP_005240739.1	similar to Escherichia coli xylose-proton symport (AAC77001.1)
YP_005240741.1	similar to Escherichia coli xylose-proton symport (AAC77001.1)
YP_005240743.1	similar to Escherichia coli phenylacetaldehyde dehydrogenase (AAC74467.1)
YP_005240745.1	similar to Escherichia coli putative AraC-type regulatory protein (AAC74766.1); contains putative DNA-binding domain
YP_005240748.1	similar to Escherichia coli putative dehydrogenase (AAC77236.1)
YP_005240749.1	SrfJ (gi|8347262); activated by transcription factor SsrB; similar to Homo sapiens lysosomal glucosyl ceramidase
YP_005240751.1	similar to Escherichia coli putative transport protein (AAC75382.1)
YP_005240754.1	similar to Escherichia coli putative virulence factor (AAC74152.1); oxidoreductase family; putative thiamine pyrophosphate-requiring enzyme
YP_005240755.1	similar to Escherichia coli putative transport protein (AAC77235.1)
YP_005240758.1	similar to Escherichia coli putative alpha helix protein (AAC77191.1)
YP_005240759.1	protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD
YP_005240760.1	similar to Escherichia coli cytochrome b562 (AAC77193.1)
YP_005240761.1	nitrogen regulation protein NR(ii) (SW:NTRB_SALTY)
YP_005240766.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_005240767.1	L-seryl-tRNA selenium transferase
YP_005240769.1	Ntr-type
YP_005240770.1	Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor
YP_005240772.1	activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions
YP_005240773.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_005240775.1	similar to Escherichia coli trehalase 6-P hydrolase (AAC77196.1); alternative inducer of maltose system; cytoplasmic
YP_005240777.2	regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon
YP_005240778.1	P-type ATPase involved in magnesium influx
YP_005240781.1	involved in the allosteric regulation of aspartate carbamoyltransferase
YP_005240782.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_005240783.1	pyrBI operon leader peptide (attenuator) (SW:LPPY_SALTY); contains a frameshift and premature stop as compared to Escherichia coli pyrBI operon leader peptide
YP_005240784.1	similar to Escherichia coli repressor of arg regulon; cer-mediated site specific recombination (AAC76269.1)
YP_005240786.1	similar to Escherichia coli putative S-transferase (AAC75358.1)
YP_005240787.1	catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway
YP_005240789.1	reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_005240790.1	catalyzes the degradation of arginine to citruline and ammonia
YP_005240793.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.
YP_005240794.1	hypothetical 15.7 dda protein in argI-miaE intergenic region (ORF15.6) (SW:YJGD_SALTY)
YP_005240795.1	tRNA-hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA (SW:MIAE_SALTY)
YP_005240797.1	hypothetical 17.8 kKa protein in miaE 3'region (ORF 17.8) (SW:YTGA_SALTY)
YP_005240798.1	hypothetical 18.3 kDa protein in miaE 3'region (ORF 18.3) (SW:YJGM_SALTY)
YP_005240799.1	hypothetical protein in miaE 3'region (ORF x) (SW:YJGN_SALTY)
YP_005240800.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_005240801.1	binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB
YP_005240802.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_005240806.1	similar to Escherichia coli L-idonate transcriptional regulator (AAC77221.1); GalR/LacI family
YP_005240807.1	similar to Escherichia coli L-idonate transporter (AAC77222.1); GntP family
YP_005240808.1	Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate
YP_005240809.1	NAD-binding
YP_005240811.1	similar to Escherichia coli gluconate kinase, thermosensitive glucokinase (AAC77225.1)
YP_005240812.1	similar to Escherichia coli putative oxidoreductase (AAC77226.1)
YP_005240813.1	similar to Escherichia coli putative prophage integrase (AAC75495.1)
YP_005240814.1	similar to Escherichia coli putative frameshift suppressor (AAC77264.1); superfamily I
YP_005240815.1	Mrr
YP_005240816.1	similar to Escherichia coli DNA-binding, ATP-dependent protease La; heat shock K-protein (AAC73542.1)
YP_005240827.1	similar to Escherichia coli putative methyltransferase (AAC77262.1)
YP_005240832.1	IicA (gi|5616506)
YP_005240835.1	putative inner membrane or exported
YP_005240838.1	regulates the expression of uxuBA
YP_005240839.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_005240844.1	similar to Escherichia coli putative resistance proteins (AAC75879.1)
YP_005240845.1	similar to Escherichia coli putative transcriptional regulator LysR-type (AAC77283.1); LysR family
YP_005240846.1	similar to Escherichia coli isoaspartyl dipeptidase (AAC77284.1)
YP_005240849.1	similar to Escherichia coli putative transport protein (AAC77288.1)
YP_005240852.1	similar to Escherichia coli putative transport protein (AAC77293.1); MFS family
YP_005240857.1	similar to Escherichia coli putative aldehyde dehydrogenase (AAC74598.1)
YP_005240861.1	involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response
YP_005240863.1	S protein; STYSJI specificity protein (SW:T1S_SALTY); specificity determinant for hsdM and hsdR
YP_005240864.1	type I restriction enzyme STYSJI Mm protein (SW:T1M_SALTY); host modification
YP_005240865.1	restriction endonuclease; the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'; subunit R is required for both nuclease and ATPase activities
YP_005240866.1	similar to Escherichia coli restriction of methylated adenine (AAC77307.1); restriction of methylated adenine
YP_005240872.1	similar to Escherichia coli putative carbon starvation protein (AAC77310.1)
YP_005240873.1	similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1)
YP_005240875.1	similar to Escherichia coli psp operon transcriptional activator (AAC74385.1); NtrC family; contains ATPase domain
YP_005240876.1	similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1)
YP_005240877.1	similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1)
YP_005240878.1	similar to Escherichia coli PTS system N-acetylgalactosamine-specific IIC component 1 (AAC76173.1)
YP_005240879.1	similar to Escherichia coli PTS enzyme IID; mannose-specific (AAC74889.1)
YP_005240880.1	similar to Escherichia coli L-glutamine:D-fructose-6-phosphate aminotransferase (AAC76752.1)
YP_005240881.1	similar to Escherichia coli putative transport protein (AAC76396.1)
YP_005240883.1	catalyzes the transfer of phosphoglycerol to the glucan backbone
YP_005240884.1	similar to Escherichia coli putative glycoprotein/receptor (AAC77316.1)
YP_005240885.1	acts to load the DnaB helicase onto the initiation site during DNA replication
YP_005240886.1	This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'
YP_005240888.1	similar to Escherichia coli putative structural protein (AAC77320.1)
YP_005240890.1	similar to Escherichia coli putative regulator (AAC77321.1); LuxR/UhpA family
YP_005240891.1	regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin
YP_005240893.1	involved in reduction of ferric iron in cytoplasmic ferrioxamine B
YP_005240894.1	contains putative diguanylate cyclase/phosphodiesterase domain 1
YP_005240897.1	16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit
YP_005240899.1	with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB
YP_005240900.1	alanine acetyltransferase that specifically acetylates ribosomal protein S18
YP_005240901.1	manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily
YP_005240902.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_005240904.1	similar to Escherichia coli hyperosmotically inducible periplasmic protein (AAC77329.1); RpoS-dependent stationary phase gene
YP_005240908.1	similar to Escherichia coli putative activating enzyme (AAC77332.1)
YP_005240911.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_005240912.1	Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate
YP_005240913.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_005240914.1	catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate
YP_005240916.1	similar to Escherichia coli putative outer membrane protein (AAC76248.1)
YP_005240917.1	member of the periplasmic pilus chaperone family of proteins
YP_005240918.1	similar to Escherichia coli putative transcriptional regulator (AAC76251.1)
YP_005240919.1	similar to Escherichia coli putative transcriptional regulator (AAC76251.1)
YP_005240921.1	Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins
YP_005240922.1	membrane protein; transcribed divergently from serB
YP_005240923.1	catalyzes the formation of serine from O-phosphoserine
YP_005240924.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_005240925.1	catalyzes the formation of NAD(+) from nicotinamide ribonucleotide
YP_005240926.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_005240927.1	catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan
YP_005240928.1	When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription
YP_005240929.1	pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog
YP_005240930.1	catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate
YP_005240931.1	similar to Escherichia coli right origin-binding protein (AAC77349.1); AraC/XylS family
YP_005240933.1	response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation
YP_005240934.1	part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation
YP_005240935.1	similar to Escherichia coli tolerance to colicin E2 (AAC77353.1)
YP_005240937.1	similar to Escherichia coli fimbrial morphology (AAC77275.1)
YP_005240938.1	similar to Escherichia coli putative outer membrane protein; export function (AAC73634.1)
YP_005240939.1	similar to Escherichia coli periplasmic chaperone; required for type 1 fimbriae (AAC77272.1)
YP_005240940.1	similar to Escherichia coli fimbrial morphology (AAC77274.1)
YP_005240943.1	similar to Escherichia coli negative response regulator of genes in aerobic pathways with sensors ArcB and CpxA (AAC77354.1); OmpR family; regulates genes in aerobic pathways
YP_005240945.1	member of the SPOUT superfamily of methyltransferases