-- dump date 20140620_055251 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type NP_459006.1 16763391 1251519 190..255 1 NC_003197.1 thr operon leader peptide 255 thrL 1251519 thrL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thr operon leader peptide NP_459006.1 190 D 99287 CDS NP_459007.1 16763392 1251520 337..2799 1 NC_003197.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 2799 thrA 1251520 thrA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional aspartokinase I/homoserine dehydrogenase I NP_459007.1 337 D 99287 CDS NP_459008.1 16763393 1251521 2801..3730 1 NC_003197.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 3730 thrB 1251521 thrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 homoserine kinase NP_459008.1 2801 D 99287 CDS NP_459009.1 16763394 1251522 3734..5020 1 NC_003197.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 5020 thrC 1251522 thrC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 threonine synthase NP_459009.1 3734 D 99287 CDS NP_459010.1 16763395 1251523 complement(5114..5887) 1 NC_003197.1 hypothetical protein 5887 1251523 STM0005 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459010.1 5114 R 99287 CDS NP_459011.1 16763396 1251524 complement(5966..7396) 1 NC_003197.1 alanine/glycine transport protein 7396 yaaJ 1251524 yaaJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alanine/glycine transport protein NP_459011.1 5966 R 99287 CDS NP_459012.1 16763397 1251525 7665..8618 1 NC_003197.1 Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 8618 talB 1251525 talB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transaldolase B NP_459012.1 7665 D 99287 CDS NP_459013.1 16763398 1251526 8729..9319 1 NC_003197.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdochetalase 9319 mogA 1251526 mogA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molybdochetalase NP_459013.1 8729 D 99287 CDS NP_459014.1 16763399 1251527 complement(9376..9942) 1 NC_003197.1 hypothetical protein 9942 1251527 STM0009 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459014.1 9376 R 99287 CDS NP_459015.1 16763400 1251528 complement(10092..10805) 1 NC_003197.1 hypothetical protein 10805 1251528 STM0010 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459015.1 10092 R 99287 CDS NP_459016.1 16763401 1251529 complement(10841..11245) 1 NC_003197.1 hypothetical protein 11245 1251529 STM0011 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459016.1 10841 R 99287 CDS NP_459017.1 16763402 1251530 11593..13509 1 NC_003197.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; chaperone protein DnaK 13509 dnaK 1251530 dnaK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone protein DnaK NP_459017.1 11593 D 99287 CDS NP_459018.1 16763403 1251531 13595..14734 1 NC_003197.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 14734 dnaJ 1251531 dnaJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone protein DnaJ NP_459018.1 13595 D 99287 CDS NP_459019.1 16763404 1251532 15014..15961 1 NC_003197.1 LysR family transcriptional regulator 15961 1251532 STM0014 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_459019.1 15014 D 99287 CDS NP_459020.1 16763405 1251533 16088..16432 1 NC_003197.1 bacteriophage protein 16432 1251533 STM0015 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bacteriophage protein NP_459020.1 16088 D 99287 CDS NP_459021.1 16763406 1251534 complement(16493..17026) 1 NC_003197.1 hypothetical protein 17026 1251534 STM0016 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459021.1 16493 R 99287 CDS NP_459022.1 16763407 1251535 complement(17043..17486) 1 NC_003197.1 hypothetical protein 17486 1251535 STM0017 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459022.1 17043 R 99287 CDS NP_459023.1 16763408 1251536 17867..19966 1 NC_003197.1 exochitinase 19966 1251536 STM0018 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 exochitinase NP_459023.1 17867 D 99287 CDS NP_459024.1 16763409 1251537 20058..23054 1 NC_003197.1 hydroxymethyltransferase 23054 1251537 STM0019 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydroxymethyltransferase NP_459024.1 20058 D 99287 CDS NP_459025.1 16763410 1251538 23335..24039 1 NC_003197.1 cytoplasmic protein 24039 1251538 STM0020 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459025.1 23335 D 99287 CDS NP_459026.1 16763411 1251539 24469..25011 1 NC_003197.1 fimbrial subunit 25011 bcfA 1251539 bcfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial subunit NP_459026.1 24469 D 99287 CDS NP_459027.1 16763412 1251540 25112..25798 1 NC_003197.1 fimbrial chaperone 25798 bcfB 1251540 bcfB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial chaperone NP_459027.1 25112 D 99287 CDS NP_459028.1 16763413 1251541 25803..28424 1 NC_003197.1 bovine colonization factor BcfC; fimbrial usher 28424 bcfC 1251541 bcfC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial usher NP_459028.1 25803 D 99287 CDS NP_459029.1 16763414 1251542 28425..29432 1 NC_003197.1 fimbrial subunit 29432 bcfD 1251542 bcfD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial subunit NP_459029.1 28425 D 99287 CDS NP_459030.1 16763415 1251543 29433..29978 1 NC_003197.1 fimbrial subunit 29978 bcfE 1251543 bcfE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial subunit NP_459030.1 29433 D 99287 CDS NP_459031.1 16763416 1251544 29994..30512 1 NC_003197.1 fimbrial subunit 30512 bcfF 1251544 bcfF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial subunit NP_459031.1 29994 D 99287 CDS NP_459032.1 16763417 1251545 30478..31209 1 NC_003197.1 fimbrial chaperone 31209 bcfG 1251545 bcfG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial chaperone NP_459032.1 30478 D 99287 CDS NP_459033.1 16763418 1251546 31274..32119 1 NC_003197.1 thiol-disulfide isomerase 32119 bcfH 1251546 bcfH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiol-disulfide isomerase NP_459033.1 31274 D 99287 CDS NP_945153.1 39546288 2673738 32116..32445 1 NC_003197.1 hypothetical protein 32445 2673738 STM0028.1n Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945153.1 32116 D 99287 CDS NP_459034.1 16763419 1251547 complement(32545..32994) 1 NC_003197.1 transcriptional regulator 32994 1251547 STM0029 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_459034.1 32545 R 99287 CDS NP_459035.1 16763420 1251548 33364..34368 1 NC_003197.1 LysR family transcriptional regulator 34368 1251548 STM0030 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_459035.1 33364 D 99287 CDS NP_459036.1 16763421 1251549 complement(34376..34816) 1 NC_003197.1 transcriptional regulator 34816 1251549 STM0031 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_459036.1 34376 R 99287 CDS NP_459037.1 16763422 1251550 35339..37057 1 NC_003197.1 arylsulfatase 37057 1251550 STM0032 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arylsulfatase NP_459037.1 35339 D 99287 CDS NP_459038.1 16763423 1251551 complement(37103..38674) 1 NC_003197.1 5'-nucleotidase 38674 1251551 STM0033 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 5'-nucleotidase NP_459038.1 37103 R 99287 CDS NP_459039.1 16763424 1251552 complement(38773..39534) 1 NC_003197.1 outer membrane/exported protein 39534 1251552 STM0034 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane/exported protein NP_459039.1 38773 R 99287 CDS NP_459040.1 16763425 1251553 40131..41624 1 NC_003197.1 arylsulfatase 41624 1251553 STM0035 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arylsulfatase NP_459040.1 40131 D 99287 CDS NP_459041.1 16763426 1251554 41723..42913 1 NC_003197.1 arylsulfatase regulator 42913 1251554 STM0036 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arylsulfatase regulator NP_459041.1 41723 D 99287 CDS NP_459042.1 16763427 1251555 42932..44185 1 NC_003197.1 cytoplasmic protein 44185 1251555 STM0037 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459042.1 42932 D 99287 CDS NP_459043.1 16763428 1251556 44312..46027 1 NC_003197.1 arylsulfatase 46027 1251556 STM0038 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arylsulfatase NP_459043.1 44312 D 99287 CDS NP_459044.1 16763429 1251557 46190..47356 1 NC_003197.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; Na(+)/H(+) antiporter NhaA 47356 nhaA 1251557 nhaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Na(+)/H(+) antiporter NhaA NP_459044.1 46190 D 99287 CDS NP_459045.1 16763430 1251558 47418..48317 1 NC_003197.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 48317 nhaR 1251558 nhaR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional activator NhaR NP_459045.1 47418 D 99287 CDS NP_459046.1 16763431 1251559 complement(48372..50411) 1 NC_003197.1 glycosyl hydrolase 50411 1251559 STM0041 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyl hydrolase NP_459046.1 48372 R 99287 CDS NP_459047.1 16763432 1251560 complement(50451..51824) 1 NC_003197.1 sodium galactoside symporter 51824 1251560 STM0042 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sodium galactoside symporter NP_459047.1 50451 R 99287 CDS NP_459048.1 16763433 1251561 complement(52280..52543) 1 NC_003197.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 52543 rpsT 1251561 rpsT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S20 NP_459048.1 52280 R 99287 CDS NP_459049.1 16763434 1251562 52649..52864 1 NC_003197.1 cytoplasmic protein 52864 yaaY 1251562 yaaY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459049.1 52649 D 99287 CDS NP_459050.1 16763435 1251563 52872..53810 1 NC_003197.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 53810 ribF 1251563 ribF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional riboflavin kinase/FMN adenylyltransferase NP_459050.1 52872 D 99287 CDS NP_459051.1 16763436 1251564 53855..56689 1 NC_003197.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucine--tRNA ligase 56689 ileS 1251564 ileS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 isoleucine--tRNA ligase NP_459051.1 53855 D 99287 CDS NP_459052.1 16763437 1251565 56689..57189 1 NC_003197.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 57189 lspA 1251565 lspA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein signal peptidase NP_459052.1 56689 D 99287 CDS NP_459053.1 16763438 1251566 57344..57793 1 NC_003197.1 peptidyl-prolyl cis-trans isomerase 57793 slpA 1251566 slpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidyl-prolyl cis-trans isomerase NP_459053.1 57344 D 99287 CDS NP_459054.1 16763439 1251567 57796..58746 1 NC_003197.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 58746 ispH 1251567 ispH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase NP_459054.1 57796 D 99287 CDS NP_459055.1 16763440 1251568 58946..60148 1 NC_003197.1 nitrite reductase 60148 1251568 STM0050 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrite reductase NP_459055.1 58946 D 99287 CDS NP_459056.1 16763441 1251569 60164..61084 1 NC_003197.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 61084 rihC 1251569 rihC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonucleoside hydrolase RihC NP_459056.1 60164 D 99287 CDS NP_459057.1 16763442 1251570 complement(61106..61792) 1 NC_003197.1 transcriptional regulator 61792 1251570 STM0052 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_459057.1 61106 R 99287 CDS NP_459058.1 16763443 1251571 complement(61794..63413) 1 NC_003197.1 sensory histidine kinase 63413 1251571 STM0053 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensory histidine kinase NP_459058.1 61794 R 99287 CDS NP_459059.1 16763444 1251572 complement(63548..64849) 1 NC_003197.1 oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); oxalacetate decarboxylase subunit beta 64849 1251572 STM0054 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxalacetate decarboxylase subunit beta NP_459059.1 63548 R 99287 CDS NP_459060.1 16763445 1251573 complement(64862..66637) 1 NC_003197.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase subunit alpha 66637 1251573 STM0055 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxaloacetate decarboxylase subunit alpha NP_459060.1 64862 R 99287 CDS NP_459061.1 16763446 1251574 complement(66654..66893) 1 NC_003197.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 66893 1251574 STM0056 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxaloacetate decarboxylase subunit gamma NP_459061.1 66654 R 99287 CDS NP_459062.1 16763447 1251575 complement(67052..68392) 1 NC_003197.1 citrate-sodium symporter 68392 1251575 STM0057 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 citrate-sodium symporter NP_459062.1 67052 R 99287 CDS NP_459063.1 16763448 1251576 68637..69680 1 NC_003197.1 citrate lyase synthetase 69680 citC2 1251576 citC2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 citrate lyase synthetase NP_459063.1 68637 D 99287 CDS NP_459064.1 16763449 1251577 69710..70003 1 NC_003197.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 70003 citD2 1251577 citD2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 citrate lyase subunit gamma NP_459064.1 69710 D 99287 CDS NP_459065.1 16763450 1251578 70000..70869 1 NC_003197.1 citrate lyase subunit beta 70869 citE2 1251578 citE2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 citrate lyase subunit beta NP_459065.1 70000 D 99287 CDS NP_459066.1 16763451 1251579 70880..72400 1 NC_003197.1 citrate-ACP transferase; citrate lyase subunit alpha 72400 citF2 1251579 citF2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 citrate lyase subunit alpha NP_459066.1 70880 D 99287 CDS NP_459067.1 16763452 1251580 72400..72951 1 NC_003197.1 cytoplasmic protein 72951 1251580 STM0062 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459067.1 72400 D 99287 CDS NP_459068.1 16763453 1251581 72929..73837 1 NC_003197.1 modifier of citrate lyase protein; 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase 73837 citG2 1251581 citG2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase NP_459068.1 72929 D 99287 CDS NP_459069.1 16763454 1251582 74017..74838 1 NC_003197.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; 4-hydroxy-tetrahydrodipicolinate reductase 74838 dapB 1251582 dapB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-hydroxy-tetrahydrodipicolinate reductase NP_459069.1 74017 D 99287 CDS YP_006892374.1 409994395 13865703 complement(74964..75239) 1 NC_003197.1 hypothetical protein 75239 13865703 STM04610 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892374.1 74964 R 99287 CDS NP_459071.1 16763456 1251584 75880..77028 1 NC_003197.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 77028 carA 1251584 carA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carbamoyl phosphate synthase small subunit NP_459071.1 75880 D 99287 CDS NP_459072.1 16763457 1251585 77047..80274 1 NC_003197.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 80274 carB 1251585 carB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carbamoyl phosphate synthase large subunit NP_459072.1 77047 D 99287 CDS NP_459073.1 16763458 1251586 80548..80943 1 NC_003197.1 regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons; DNA-binding transcriptional activator CaiF 80943 caiF 1251586 caiF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional activator CaiF NP_459073.1 80548 D 99287 CDS NP_459074.1 16763459 1251587 complement(81020..81616) 1 NC_003197.1 involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE 81616 caiE 1251587 caiE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carnitine operon protein CaiE NP_459074.1 81020 R 99287 CDS NP_459075.1 16763460 1251588 complement(81725..82510) 1 NC_003197.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase 82510 caiD 1251588 caiD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carnitinyl-CoA dehydratase NP_459075.1 81725 R 99287 CDS NP_459076.1 16763461 1251589 complement(82564..84117) 1 NC_003197.1 crotonobetaine/carnitine-CoA ligase 84117 caiC 1251589 caiC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 crotonobetaine/carnitine-CoA ligase NP_459076.1 82564 R 99287 CDS NP_459077.1 16763462 1251590 complement(84180..85397) 1 NC_003197.1 catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase 85397 caiB 1251590 caiB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 crotonobetainyl-CoA:carnitine CoA-transferase NP_459077.1 84180 R 99287 CDS NP_459078.1 16763463 1251591 complement(85509..86651) 1 NC_003197.1 catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase 86651 caiA 1251591 caiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 crotonobetainyl-CoA dehydrogenase NP_459078.1 85509 R 99287 CDS NP_459079.1 16763464 1251592 complement(86686..88203) 1 NC_003197.1 catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter 88203 caiT 1251592 caiT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-carnitine/gamma-butyrobetaine antiporter NP_459079.1 86686 R 99287 CDS YP_006892375.1 409994396 13865720 88431..88616 1 NC_003197.1 hypothetical protein 88616 13865720 STM04615 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892375.1 88431 D 99287 CDS NP_459080.1 16763465 1251593 88684..89454 1 NC_003197.1 required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; electron transfer flavoprotein FixA 89454 fixA 1251593 fixA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 electron transfer flavoprotein FixA NP_459080.1 88684 D 99287 CDS NP_459081.1 16763466 1251594 89470..90411 1 NC_003197.1 involved in electron transfer during carnitine metabolism; electron transfer flavoprotein FixB 90411 fixB 1251594 fixB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 electron transfer flavoprotein FixB NP_459081.1 89470 D 99287 CDS NP_459082.1 16763467 1251595 90461..91747 1 NC_003197.1 FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; oxidoreductase FixC 91747 fixC 1251595 fixC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase FixC NP_459082.1 90461 D 99287 CDS NP_459083.1 16763468 1251596 91744..92031 1 NC_003197.1 ferredoxin-lik3 protein FixX 92031 fixX 1251596 fixX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferredoxin-lik3 protein FixX NP_459083.1 91744 D 99287 CDS NP_459084.1 16763469 1251597 92178..93518 1 NC_003197.1 MFS family transporter 93518 yaaU 1251597 yaaU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family transporter NP_459084.1 92178 D 99287 CDS NP_459085.1 16763470 1251598 93607..93837 1 NC_003197.1 outer membrane lipoprotein 93837 1251598 STM0080 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_459085.1 93607 D 99287 CDS NP_459086.1 16763471 1251599 94131..94547 1 NC_003197.1 hypothetical protein 94547 1251599 STM0081 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459086.1 94131 D 99287 CDS NP_459087.1 16763472 1251600 complement(94771..95061) 1 NC_003197.1 hypothetical protein 95061 1251600 STM0082 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459087.1 94771 R 99287 CDS NP_459089.1 16763474 1251602 95959..97848 1 NC_003197.1 sulfatase 97848 1251602 STM0084 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfatase NP_459089.1 95959 D 99287 CDS NP_459090.1 16763475 1251603 98255..98785 1 NC_003197.1 Required for full activity of KefC, a potassium-proton antiporter; glutathione-regulated potassium-efflux system ancillary protein KefF 98785 yabF 1251603 yabF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione-regulated potassium-efflux system ancillary protein KefF NP_459090.1 98255 D 99287 CDS NP_459091.1 16763476 1251604 98778..100640 1 NC_003197.1 transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 100640 kefC 1251604 kefC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione-regulated potassium-efflux system protein KefC NP_459091.1 98778 D 99287 CDS NP_459092.1 16763477 1251605 100839..101318 1 NC_003197.1 catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 101318 folA 1251605 folA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dihydrofolate reductase NP_459092.1 100839 D 99287 CDS NP_459093.1 16763478 1251606 complement(101424..102272) 1 NC_003197.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; bis(5'-nucleosyl)-tetraphosphatase 102272 apaH 1251606 apaH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bis(5'-nucleosyl)-tetraphosphatase NP_459093.1 101424 R 99287 CDS NP_459094.1 16763479 1251607 complement(102283..102660) 1 NC_003197.1 protein associated with Co2+ and Mg2+ efflux; protein ApaG 102660 apaG 1251607 apaG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protein ApaG NP_459094.1 102283 R 99287 CDS NP_459095.1 16763480 1251608 complement(102663..103484) 1 NC_003197.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; rRNA small subunit methyltransferase A 103484 ksgA 1251608 ksgA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA small subunit methyltransferase A NP_459095.1 102663 R 99287 CDS NP_459096.1 16763481 1251609 complement(103481..104470) 1 NC_003197.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 104470 pdxA 1251609 pdxA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-hydroxythreonine-4-phosphate dehydrogenase NP_459096.1 103481 R 99287 CDS NP_459097.1 16763482 1251610 complement(104470..105756) 1 NC_003197.1 peptidyl-prolyl cis-trans isomerase involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; chaperone SurA 105756 surA 1251610 surA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone SurA NP_459097.1 104470 R 99287 CDS NP_459098.1 16763483 1251611 complement(105810..108170) 1 NC_003197.1 organic solvent tolerance protein; determines N-hexane tolerance and is involved in outer membrane permeability; LPS-assembly protein LptD 108170 lpdT 1251611 lpdT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LPS-assembly protein LptD NP_459098.1 105810 R 99287 CDS NP_459099.1 16763484 1251612 108424..109236 1 NC_003197.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like protein 109236 djlA 1251612 djlA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Dna-J like protein NP_459099.1 108424 D 99287 CDS NP_459100.1 16763485 1251613 complement(109331..109990) 1 NC_003197.1 catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A 109990 rluA 1251613 rluA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 23S rRNA/tRNA pseudouridine synthase A NP_459100.1 109331 R 99287 CDS NP_459101.1 16763486 1251614 complement(110002..112908) 1 NC_003197.1 ATP-dependent helicase HepA; transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; RNA polymerase-associated protein RapA 112908 rapA 1251614 rapA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNA polymerase-associated protein RapA NP_459101.1 110002 R 99287 CDS NP_459102.1 16763487 1251615 complement(113082..115433) 1 NC_003197.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 115433 polB 1251615 polB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase II NP_459102.1 113082 R 99287 CDS NP_459103.1 16763488 1251616 complement(115477..116097) 1 NC_003197.1 hypothetical protein 116097 1251616 STM0098 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459103.1 115477 R 99287 CDS NP_459105.1 16763490 1251618 116816..117235 1 NC_003197.1 cytoplasmic protein 117235 1251618 STM0100 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459105.1 116816 D 99287 CDS NP_459106.1 16763491 1251619 complement(117241..117936) 1 NC_003197.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 117936 araD 1251619 araD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-ribulose-5-phosphate 4-epimerase NP_459106.1 117241 R 99287 CDS NP_459107.1 16763492 1251620 complement(118077..119579) 1 NC_003197.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 119579 araA 1251620 araA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-arabinose isomerase NP_459107.1 118077 R 99287 CDS NP_459108.1 16763493 1251621 complement(119590..121299) 1 NC_003197.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 121299 araB 1251621 araB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribulokinase NP_459108.1 119590 R 99287 CDS NP_459109.1 16763494 1251622 121640..122485 1 NC_003197.1 positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 122485 araC 1251622 araC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional regulator AraC NP_459109.1 121640 D 99287 CDS NP_459110.1 16763495 1251623 122604..123371 1 NC_003197.1 DedA family; DedA family membrane protein 123371 yabI 1251623 yabI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DedA family membrane protein NP_459110.1 122604 D 99287 CDS NP_459111.1 16763496 1251624 complement(123410..124117) 1 NC_003197.1 with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine ABC transporter ATP-binding protein 124117 thiQ 1251624 thiQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiamine ABC transporter ATP-binding protein NP_459111.1 123410 R 99287 CDS NP_459112.1 16763497 1251625 complement(124101..125711) 1 NC_003197.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine ABC transporter permease ThiP 125711 thiP 1251625 thiP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiamine ABC transporter permease ThiP NP_459112.1 124101 R 99287 CDS NP_459113.1 16763498 1251626 complement(125687..126670) 1 NC_003197.1 part of the thiamine and TPP transport system tbpA-thiPQ; thiamine ABC transporter substrate-binding protein ThiP 126670 tbpA 1251626 tbpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiamine ABC transporter substrate-binding protein ThiP NP_459113.1 125687 R 99287 CDS NP_459114.1 16763499 1251627 complement(126848..128506) 1 NC_003197.1 activates sgrS under glucose-phosphate stress conditions; HTH-type transcriptional regulator SgrR 128506 yabN 1251627 yabN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator SgrR NP_459114.1 126848 R 99287 CDS NP_459115.1 16763500 1251628 complement(129057..129662) 1 NC_003197.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; 3-isopropylmalate dehydratase small subunit 129662 leuD 1251628 leuD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-isopropylmalate dehydratase small subunit NP_459115.1 129057 R 99287 CDS NP_459116.1 16763501 1251629 complement(129673..131073) 1 NC_003197.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; 3-isopropylmalate dehydratase large subunit 131073 leuC 1251629 leuC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-isopropylmalate dehydratase large subunit NP_459116.1 129673 R 99287 CDS NP_459117.1 16763502 1251630 complement(131076..132167) 1 NC_003197.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 132167 leuB 1251630 leuB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-isopropylmalate dehydrogenase NP_459117.1 131076 R 99287 CDS NP_459118.1 16763503 1251631 complement(132167..133738) 1 NC_003197.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 133738 leuA 1251631 leuA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-isopropylmalate synthase NP_459118.1 132167 R 99287 CDS NP_459119.1 16763504 1251632 complement(133826..133912) 1 NC_003197.1 involved in attenuation control of the leuABCD operon in leucine biosynthesis; leu operon leader peptide 133912 leuL 1251632 leuL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 leu operon leader peptide NP_459119.1 133826 R 99287 CDS NP_459120.1 16763505 1251633 134569..135513 1 NC_003197.1 activator for leuABCD operon; member of LysR family of transcriptional activators; HTH-type transcriptional regulator LeuO 135513 leuO 1251633 leuO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator LeuO NP_459120.1 134569 D 99287 CDS NP_459121.1 16763506 1251634 135898..137559 1 NC_003197.1 catalytic subunit; catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 large subunit 137559 ilvI 1251634 ilvI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetolactate synthase 3 large subunit NP_459121.1 135898 D 99287 CDS NP_459122.1 16763507 1251635 137562..138053 1 NC_003197.1 regulatory subunit; with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; acetolactate synthase 3 small subunit 138053 ilvH 1251635 ilvH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetolactate synthase 3 small subunit NP_459122.1 137562 D 99287 CDS NP_459123.1 16763508 1251636 138337..139341 1 NC_003197.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 139341 fruR 1251636 fruR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional regulator FruR NP_459123.1 138337 D 99287 CDS YP_006892376.1 409994397 13865718 complement(139338..139487) 1 NC_003197.1 hypothetical protein 139487 13865718 STM04630 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892376.1 139338 R 99287 CDS NP_459124.1 16763509 1251637 139947..140405 1 NC_003197.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 140405 yabB 1251637 yabB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division protein MraZ NP_459124.1 139947 D 99287 CDS NP_459125.1 16763510 1251638 140407..141348 1 NC_003197.1 rRNA small subunit methyltransferase H 141348 mraW 1251638 mraW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA small subunit methyltransferase H NP_459125.1 140407 D 99287 CDS NP_459126.1 16763511 1251639 141345..141710 1 NC_003197.1 membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 141710 ftsL 1251639 ftsL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division protein FtsL NP_459126.1 141345 D 99287 CDS NP_459127.1 16763512 1251640 141726..143492 1 NC_003197.1 penicillin-binding protein 3; peptidoglycan synthase FtsI 143492 ftsI 1251640 ftsI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidoglycan synthase FtsI NP_459127.1 141726 D 99287 CDS NP_459128.1 16763513 1251641 143479..144966 1 NC_003197.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 144966 murE 1251641 murE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase NP_459128.1 143479 D 99287 CDS NP_459129.1 16763514 1251642 144963..146321 1 NC_003197.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 146321 murF 1251642 murF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase NP_459129.1 144963 D 99287 CDS NP_459130.1 16763515 1251643 146315..147397 1 NC_003197.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 147397 mraY 1251643 mraY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phospho-N-acetylmuramoyl-pentapeptide- transferase NP_459130.1 146315 D 99287 CDS NP_459131.1 16763516 1251644 147400..148716 1 NC_003197.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoylalanine--D-glutamate ligase 148716 murD 1251644 murD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-N-acetylmuramoylalanine--D-glutamate ligase NP_459131.1 147400 D 99287 CDS NP_459132.1 16763517 1251645 148716..149960 1 NC_003197.1 cell division protein FtsW; integral membrane protein involved in stabilizing FstZ ring during cell division; lipid II flippase FtsW 149960 ftsW 1251645 ftsW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipid II flippase FtsW NP_459132.1 148716 D 99287 CDS NP_459133.1 16763518 1251646 149957..151024 1 NC_003197.1 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 151024 murG 1251646 murG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase NP_459133.1 149957 D 99287 CDS NP_459134.1 16763519 1251647 151143..152618 1 NC_003197.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 152618 murC 1251647 murC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-N-acetylmuramate--L-alanine ligase NP_459134.1 151143 D 99287 CDS NP_459135.1 16763520 1251648 152611..153531 1 NC_003197.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 153531 ddl 1251648 ddl Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-alanine--D-alanine ligase NP_459135.1 152611 D 99287 CDS NP_459136.1 16763521 1251649 153533..154363 1 NC_003197.1 involved in septum formation; cell division protein FtsQ 154363 ftsQ 1251649 ftsQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division protein FtsQ NP_459136.1 153533 D 99287 CDS NP_459137.1 16763522 1251650 154360..155622 1 NC_003197.1 ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 155622 ftsA 1251650 ftsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division protein FtsA NP_459137.1 154360 D 99287 CDS NP_459138.1 16763523 1251651 155683..156834 1 NC_003197.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 156834 ftsZ 1251651 ftsZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division protein FtsZ NP_459138.1 155683 D 99287 CDS NP_459139.1 16763524 1251652 156935..157852 1 NC_003197.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 157852 lpxC 1251652 lpxC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase NP_459139.1 156935 D 99287 CDS NP_459140.2 161353611 1251653 158130..158627 1 NC_003197.1 secM translational pause allows for the initiation of secA translation; SecA regulator SecM 158627 yacA 1251653 yacA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SecA regulator SecM NP_459140.2 158130 D 99287 CDS NP_459141.1 16763526 1251654 158689..161394 1 NC_003197.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 161394 secA 1251654 secA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 preprotein translocase subunit SecA NP_459141.1 158689 D 99287 CDS NP_459142.1 16763527 1251655 161546..161941 1 NC_003197.1 prefers dGTP; causes AT-GC transversions; 7,8-dihydro-8-oxoguanine-triphosphatase 161941 mutT 1251655 mutT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 7,8-dihydro-8-oxoguanine-triphosphatase NP_459142.1 161546 D 99287 CDS NP_459143.1 16763528 1251656 complement(162263..162454) 1 NC_003197.1 DNA gyrase inhibitor 162454 yacG 1251656 yacG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA gyrase inhibitor NP_459143.1 162263 R 99287 CDS NP_459144.1 16763529 1251657 complement(162464..163207) 1 NC_003197.1 cell division protein ZapD 163207 zapD 1251657 zapD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division protein ZapD NP_459144.1 162464 R 99287 CDS NP_459145.1 16763530 1251658 complement(163207..163827) 1 NC_003197.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 163827 coaE 1251658 coaE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dephospho-CoA kinase NP_459145.1 163207 R 99287 CDS NP_459146.1 16763531 1251659 164053..165096 1 NC_003197.1 guanosine 5'-monophosphate oxidoreductase; catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; GMP reductase 165096 guaC 1251659 guaC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GMP reductase NP_459146.1 164053 D 99287 CDS NP_459147.1 16763532 1251660 complement(165127..166329) 1 NC_003197.1 involved in biogenesis of fimbriae, protein transport, DNA uptake; type IV pilin biogenesis protein 166329 hofC 1251660 hofC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 type IV pilin biogenesis protein NP_459147.1 165127 R 99287 CDS NP_459148.1 16763533 1251661 complement(166319..167704) 1 NC_003197.1 integral membrane protein 167704 hofB 1251661 hofB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integral membrane protein NP_459148.1 166319 R 99287 CDS NP_459149.1 16763534 1251662 complement(167714..168151) 1 NC_003197.1 major pilin subunit 168151 ppdD 1251662 ppdD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 major pilin subunit NP_459149.1 167714 R 99287 CDS NP_459150.1 16763535 1251663 complement(168373..169266) 1 NC_003197.1 quinolinate phosphoribosyltransferase; catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 169266 nadC 1251663 nadC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nicotinate-nucleotide pyrophosphorylase NP_459150.1 168373 R 99287 CDS NP_459151.1 16763536 1251664 169354..169917 1 NC_003197.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 169917 ampD 1251664 ampD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD NP_459151.1 169354 D 99287 CDS NP_459152.1 16763537 1251665 169914..170768 1 NC_003197.1 involved in regulation of beta-lactamase; signaling protein; regulatory protein AmpE 170768 ampE 1251665 ampE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein AmpE NP_459152.1 169914 D 99287 CDS NP_459153.1 16763538 1251666 complement(170860..171810) 1 NC_003197.1 hypothetical protein 171810 1251666 STM0148 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459153.1 170860 R 99287 CDS NP_459154.1 16763539 1251667 complement(171810..173216) 1 NC_003197.1 Na+/galactoside symporter 173216 1251667 STM0149 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Na+/galactoside symporter NP_459154.1 171810 R 99287 CDS NP_459155.1 16763540 1251668 complement(173380..174753) 1 NC_003197.1 aromatic amino acid transport protein AroP 174753 aroP 1251668 aroP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aromatic amino acid transport protein AroP NP_459155.1 173380 R 99287 CDS NP_459156.1 16763541 1251669 175316..176080 1 NC_003197.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; pyruvate dehydrogenase complex repressor 176080 pdhR 1251669 pdhR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate dehydrogenase complex repressor NP_459156.1 175316 D 99287 CDS NP_459157.1 16763542 1251670 176240..178903 1 NC_003197.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase decarboxylase subunit E1 178903 aceE 1251670 aceE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate dehydrogenase decarboxylase subunit E1 NP_459157.1 176240 D 99287 CDS NP_459158.1 16763543 1251671 178918..180807 1 NC_003197.1 E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; pyruvate dehydrogenase dihydrolipoyltransacetylase subunit E2 180807 aceF 1251671 aceF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate dehydrogenase dihydrolipoyltransacetylase subunit E2 NP_459158.1 178918 D 99287 CDS NP_459159.1 16763544 1251672 181007..182431 1 NC_003197.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; pyruvate dehydrogenase lipoamide dehydrogenase subunit E3 182431 lpdA 1251672 lpdA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate dehydrogenase lipoamide dehydrogenase subunit E3 NP_459159.1 181007 D 99287 CDS NP_459160.1 16763545 1251673 182720..183004 1 NC_003197.1 outer membrane protein 183004 1251673 STM0155 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_459160.1 182720 D 99287 CDS NP_459161.1 16763546 1251674 complement(183042..183833) 1 NC_003197.1 periplasmic protein 183833 1251674 STM0156 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_459161.1 183042 R 99287 CDS NP_459162.1 16763547 1251675 complement(183846..185468) 1 NC_003197.1 outer membrane protein 185468 yacH 1251675 yacH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_459162.1 183846 R 99287 CDS NP_459163.1 16763548 1251676 185857..188454 1 NC_003197.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 188454 acnB 1251676 acnB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase NP_459163.1 185857 D 99287 CDS NP_459164.1 16763549 1251677 complement(188515..189357) 1 NC_003197.1 restriction endonuclease 189357 1251677 STM0159 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 restriction endonuclease NP_459164.1 188515 R 99287 CDS NP_459165.1 16763550 1251678 189603..189965 1 NC_003197.1 hypothetical protein 189965 1251678 STM0160 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459165.1 189603 D 99287 CDS NP_459166.1 16763551 1251679 190200..191153 1 NC_003197.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 191153 kdgT 1251679 kdgT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-keto-3-deoxygluconate permease NP_459166.1 190200 D 99287 CDS NP_459167.1 16763552 1251680 191150..192421 1 NC_003197.1 inner membrane protein 192421 1251680 STM0162 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459167.1 191150 D 99287 CDS NP_459168.1 16763553 1251681 192411..193394 1 NC_003197.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 193394 pdxA 1251681 pdxA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-hydroxythreonine-4-phosphate dehydrogenase NP_459168.1 192411 D 99287 CDS NP_459169.1 16763554 1251682 193404..194171 1 NC_003197.1 LysR family transcriptional regulator 194171 1251682 STM0164 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_459169.1 193404 D 99287 CDS NP_459170.1 16763555 1251683 complement(194201..194995) 1 NC_003197.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 194995 speD 1251683 speD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 S-adenosylmethionine decarboxylase NP_459170.1 194201 R 99287 CDS NP_459171.1 16763556 1251684 complement(195016..195876) 1 NC_003197.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 195876 speE 1251684 speE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 spermidine synthase NP_459171.1 195016 R 99287 CDS NP_459172.1 16763557 1251685 complement(195983..196330) 1 NC_003197.1 periplasmic protein 196330 yacC 1251685 yacC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_459172.1 195983 R 99287 CDS NP_459173.1 16763558 1251686 196532..198142 1 NC_003197.1 laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; blue copper oxidase CueO 198142 cueO 1251686 cueO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 blue copper oxidase CueO NP_459173.1 196532 D 99287 CDS NP_459174.1 16763559 1251687 complement(198220..200610) 1 NC_003197.1 glucose dehydrogenase 200610 gcd 1251687 gcd Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucose dehydrogenase NP_459174.1 198220 R 99287 CDS NP_459175.1 16763560 1251688 200816..201352 1 NC_003197.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine phosphoribosyltransferase 201352 hpt 1251688 hpt Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypoxanthine phosphoribosyltransferase NP_459175.1 200816 D 99287 CDS NP_459176.1 16763561 1251689 complement(201410..202072) 1 NC_003197.1 catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase 202072 yadF 1251689 yadF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carbonic anhydrase NP_459176.1 201410 R 99287 CDS NP_459177.1 16763562 1251690 202181..203107 1 NC_003197.1 multidrug ABC transporter ATPase 203107 yadG 1251690 yadG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug ABC transporter ATPase NP_459177.1 202181 D 99287 CDS NP_459178.1 16763563 1251691 203104..203874 1 NC_003197.1 ABC superfamily membrane protein; transporter 203874 yadH 1251691 yadH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transporter NP_459178.1 203104 D 99287 CDS NP_459179.1 16763564 1251692 complement(203991..205070) 1 NC_003197.1 fimbrial protein 205070 stiH 1251692 stiH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial protein NP_459179.1 203991 R 99287 CDS NP_459180.1 16763565 1251693 complement(205079..207625) 1 NC_003197.1 fimbrial usher 207625 stiC 1251693 stiC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial usher NP_459180.1 205079 R 99287 CDS NP_459181.1 16763566 1251694 complement(207652..208335) 1 NC_003197.1 fimbrial chaperone 208335 stiB 1251694 stiB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial chaperone NP_459181.1 207652 R 99287 CDS NP_459182.1 16763567 1251695 complement(208383..208922) 1 NC_003197.1 fimbrial subunit 208922 stiA 1251695 stiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial subunit NP_459182.1 208383 R 99287 CDS NP_459183.1 16763568 1251696 209293..209733 1 NC_003197.1 PTS system transporter subunit IIA 209733 yadI 1251696 yadI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system transporter subunit IIA NP_459183.1 209293 D 99287 CDS NP_459184.1 16763569 1251697 209795..211024 1 NC_003197.1 xylanase/chitin deacetylase 211024 yadE 1251697 yadE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 xylanase/chitin deacetylase NP_459184.1 209795 D 99287 CDS NP_459185.1 16763570 1251698 complement(211031..211411) 1 NC_003197.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate 1-decarboxylase 211411 panD 1251698 panD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aspartate 1-decarboxylase NP_459185.1 211031 R 99287 CDS NP_459186.1 16763571 1251699 complement(211506..212360) 1 NC_003197.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate synthetase 212360 panC 1251699 panC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pantoate synthetase NP_459186.1 211506 R 99287 CDS NP_459187.1 16763572 1251700 complement(212486..213277) 1 NC_003197.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 213277 panB 1251700 panB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-methyl-2-oxobutanoate hydroxymethyltransferase NP_459187.1 212486 R 99287 CDS NP_459188.1 16763573 1251701 complement(213398..213877) 1 NC_003197.1 catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP; 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 213877 folK 1251701 folK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase NP_459188.1 213398 R 99287 CDS NP_459189.1 16763574 1251702 complement(213874..215292) 1 NC_003197.1 Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase I 215292 pcnB 1251702 pcnB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 poly(A) polymerase I NP_459189.1 213874 R 99287 CDS NP_459190.2 161353610 1251703 complement(215433..216329) 1 NC_003197.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 216329 yadB 1251703 yadB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamyl-Q tRNA(Asp) synthetase NP_459190.2 215433 R 99287 CDS NP_459191.1 16763576 1251704 complement(216398..216853) 1 NC_003197.1 dnaK suppressor protein (SW:DKSA_SALTY); suppresses dnaK deletion; RNA polymerase-binding transcription factor 216853 dksA 1251704 dksA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNA polymerase-binding transcription factor NP_459191.1 216398 R 99287 CDS NP_459192.1 16763577 1251705 complement(217030..217734) 1 NC_003197.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 217734 sfsA 1251705 sfsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar fermentation stimulation protein A NP_459192.1 217030 R 99287 CDS NP_459193.1 16763578 1251706 complement(217751..218281) 1 NC_003197.1 2'-5' RNA ligase 218281 ligT 1251706 ligT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2'-5' RNA ligase NP_459193.1 217751 R 99287 CDS NP_459194.1 16763579 1251707 218309..220783 1 NC_003197.1 ATP-dependent helicase 220783 hrpB 1251707 hrpB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent helicase NP_459194.1 218309 D 99287 CDS NP_459195.1 16763580 1251708 220923..223445 1 NC_003197.1 penicillin-binding protein 1b; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; transpeptidase/transglycosylase 223445 mrcB 1251708 mrcB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transpeptidase/transglycosylase NP_459195.1 220923 D 99287 CDS NP_459196.1 16763581 1251709 223738..225927 1 NC_003197.1 involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; ferrichrome outer membranereceptor/ transporter 225927 fhuA 1251709 fhuA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferrichrome outer membranereceptor/ transporter NP_459196.1 223738 D 99287 CDS NP_459197.1 16763582 1251710 225976..226773 1 NC_003197.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron(3+)-hydroxamate ABC transporter ATP-binding protein FhuC 226773 fhuC 1251710 fhuC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 iron(3+)-hydroxamate ABC transporter ATP-binding protein FhuC NP_459197.1 225976 D 99287 CDS NP_459198.1 16763583 1251711 226773..227663 1 NC_003197.1 Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron(3+)-hydroxamate ABC transporter substrate-binding protein FhuD 227663 fhuD 1251711 fhuD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 iron(3+)-hydroxamate ABC transporter substrate-binding protein FhuD NP_459198.1 226773 D 99287 CDS NP_459199.1 16763584 1251712 227660..229717 1 NC_003197.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron(3+)-hydroxamate ABC transporter permease FhuB 229717 fhuB 1251712 fhuB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 iron(3+)-hydroxamate ABC transporter permease FhuB NP_459199.1 227660 D 99287 CDS NP_459200.1 16763585 1251713 230657..231217 1 NC_003197.1 major fimbrial subunit StfA; fimbrial subunit 231217 stfA 1251713 stfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial subunit NP_459200.1 230657 D 99287 CDS NP_459201.1 16763586 1251714 231303..233960 1 NC_003197.1 outer membrane usher protein StfC; fimbrial outer membrane usher 233960 stfC 1251714 stfC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial outer membrane usher NP_459201.1 231303 D 99287 CDS NP_459202.1 16763587 1251715 233978..234730 1 NC_003197.1 periplasmic fimbrial chaperone StfD; periplasmic fimbrial chaperone 234730 stfD 1251715 stfD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic fimbrial chaperone NP_459202.1 233978 D 99287 CDS NP_459203.1 16763588 1251716 234749..235261 1 NC_003197.1 minor fimbrial subunit StfE; minor fimbrial subunit 235261 stfE 1251716 stfE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor fimbrial subunit NP_459203.1 234749 D 99287 CDS NP_459204.1 16763589 1251717 235258..235734 1 NC_003197.1 minor fimbrial subunit StfF; minor fimbrial subunit 235734 stfF 1251717 stfF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor fimbrial subunit NP_459204.1 235258 D 99287 CDS NP_459205.1 16763590 1251718 235734..236264 1 NC_003197.1 minor fimbrial subunit StfG; adhesin; minor fimbrial subunit 236264 stfG 1251718 stfG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor fimbrial subunit NP_459205.1 235734 D 99287 CDS NP_459206.1 16763591 1251719 236264..237103 1 NC_003197.1 outer membrane protein 237103 1251719 STM0201 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_459206.1 236264 D 99287 CDS NP_459207.1 16763592 1251720 complement(237211..238491) 1 NC_003197.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde 2,1-aminomutase 238491 hemL 1251720 hemL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamate-1-semialdehyde 2,1-aminomutase NP_459207.1 237211 R 99287 CDS NP_459208.1 16763593 1251721 238661..240082 1 NC_003197.1 Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; H(+)/Cl(-) exchange transporter ClcA 240082 clcA 1251721 clcA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 H(+)/Cl(-) exchange transporter ClcA NP_459208.1 238661 D 99287 CDS NP_459209.2 39546289 1251722 240164..240508 1 NC_003197.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 240508 yadR 1251722 yadR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 iron-sulfur cluster insertion protein ErpA NP_459209.2 240164 D 99287 CDS NP_459210.1 16763595 1251723 complement(240609..241232) 1 NC_003197.1 inner membrane protein 241232 yadS 1251723 yadS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459210.1 240609 R 99287 CDS NP_459211.1 16763596 1251724 complement(241269..242069) 1 NC_003197.1 solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12 transporter substrate-binding protein BtuF 242069 btuF 1251724 btuF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 vitamin B12 transporter substrate-binding protein BtuF NP_459211.1 241269 R 99287 CDS NP_459212.1 16763597 1251725 complement(242062..242760) 1 NC_003197.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 242760 pfs 1251725 pfs Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase NP_459212.1 242062 R 99287 CDS NP_459213.1 16763598 1251726 242845..244362 1 NC_003197.1 forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 244362 dgt 1251726 dgt Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 deoxyguanosinetriphosphate triphosphohydrolase NP_459213.1 242845 D 99287 CDS NP_459214.1 16763599 1251727 244492..245919 1 NC_003197.1 protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 245919 htrA 1251727 htrA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 serine endoprotease NP_459214.1 244492 D 99287 CDS NP_459215.1 16763600 1251728 246072..247229 1 NC_003197.1 regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; carbohydrate diacid transcriptional activator CdaR 247229 cdaR 1251728 cdaR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carbohydrate diacid transcriptional activator CdaR NP_459215.1 246072 D 99287 CDS NP_459216.1 16763601 1251729 complement(247318..247704) 1 NC_003197.1 hypothetical protein 247704 1251729 STM0211 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459216.1 247318 R 99287 CDS NP_459217.1 16763602 1251730 247951..249252 1 NC_003197.1 inner membrane protein 249252 1251730 STM0212 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459217.1 247951 D 99287 CDS NP_459218.1 16763603 1251731 complement(249289..250113) 1 NC_003197.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 250113 dapD 1251731 dapD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase NP_459218.1 249289 R 99287 CDS NP_459219.1 16763604 1251732 complement(250143..252815) 1 NC_003197.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; bifunctional uridylyltransferase/uridylyl-removing protein 252815 glnD 1251732 glnD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional uridylyltransferase/uridylyl-removing protein NP_459219.1 250143 R 99287 CDS NP_459220.1 16763605 1251733 complement(253052..253846) 1 NC_003197.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 253846 map 1251733 map Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methionine aminopeptidase NP_459220.1 253052 R 99287 CDS NP_459221.1 16763606 1251734 254297..255022 1 NC_003197.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 255022 rpsB 1251734 rpsB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S2 NP_459221.1 254297 D 99287 CDS NP_459222.1 16763607 1251735 255280..256131 1 NC_003197.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 256131 tsf 1251735 tsf Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 elongation factor Ts NP_459222.1 255280 D 99287 CDS NP_459223.1 16763608 1251736 256276..257001 1 NC_003197.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 257001 pyrH 1251736 pyrH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 uridylate kinase NP_459223.1 256276 D 99287 CDS NP_459224.1 16763609 1251737 257148..257705 1 NC_003197.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 257705 frr 1251737 frr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribosome recycling factor NP_459224.1 257148 D 99287 CDS NP_459225.1 16763610 1251738 257846..259042 1 NC_003197.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 259042 dxr 1251738 dxr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1-deoxy-D-xylulose 5-phosphate reductoisomerase NP_459225.1 257846 D 99287 CDS NP_459226.1 16763611 1251739 259355..260113 1 NC_003197.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; Ditrans,polycis-undecaprenyl-diphosphate synthase 260113 uppS 1251739 uppS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Ditrans,polycis-undecaprenyl-diphosphate synthase NP_459226.1 259355 D 99287 CDS NP_459227.1 16763612 1251740 260126..260983 1 NC_003197.1 catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; phosphatidate cytidylyltransferase 260983 cdsA 1251740 cdsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphatidate cytidylyltransferase NP_459227.1 260126 D 99287 CDS NP_459228.1 16763613 1251741 260995..262347 1 NC_003197.1 catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 262347 yaeL 1251741 yaeL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 zinc metallopeptidase RseP NP_459228.1 260995 D 99287 CDS NP_459229.1 16763614 1251742 262379..264793 1 NC_003197.1 part of a complex with BamABCDE; involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor BamA 264793 bamA 1251742 bamA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein assembly factor BamA NP_459229.1 262379 D 99287 CDS NP_459230.1 16763615 1251743 264916..265401 1 NC_003197.1 outer membrane protein OmpH; chaperone protein Skp 265401 1251743 STM0225 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone protein Skp NP_459230.1 264916 D 99287 CDS NP_459231.1 16763616 1251744 265405..266430 1 NC_003197.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 266430 lpxD 1251744 lpxD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase NP_459231.1 265405 D 99287 CDS NP_459232.1 16763617 1251745 266536..266991 1 NC_003197.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 266991 fabZ 1251745 fabZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (3R)-hydroxymyristoyl-ACP dehydratase NP_459232.1 266536 D 99287 CDS NP_459233.1 16763618 1251746 266995..267783 1 NC_003197.1 UDP-N-acetylglucosamine acyltransferase; catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; acyl-[ACP]--UDP-N-acetylglucosamine O-acyltransferase 267783 lpxA 1251746 lpxA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acyl-[ACP]--UDP-N-acetylglucosamine O-acyltransferase NP_459233.1 266995 D 99287 CDS NP_459234.1 16763619 1251747 267783..268931 1 NC_003197.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 268931 lpxB 1251747 lpxB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipid-A-disaccharide synthase NP_459234.1 267783 D 99287 CDS NP_459235.1 16763620 1251748 268928..269524 1 NC_003197.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 269524 rnhB 1251748 rnhB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonuclease HII NP_459235.1 268928 D 99287 CDS NP_459236.1 16763621 1251749 269548..273030 1 NC_003197.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 273030 dnaE 1251749 dnaE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase III subunit alpha NP_459236.1 269548 D 99287 CDS NP_459237.1 16763622 1251750 273043..274002 1 NC_003197.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 274002 accA 1251750 accA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyl-CoA carboxylase carboxyltransferase subunit alpha NP_459237.1 273043 D 99287 CDS NP_459238.1 16763623 1251751 274183..275946 1 NC_003197.1 endochitinase 275946 1251751 STM0233 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 endochitinase NP_459238.1 274183 D 99287 CDS NP_459239.1 16763624 1251752 276022..278163 1 NC_003197.1 lysine decarboxylase 2 278163 ldcC 1251752 ldcC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lysine decarboxylase 2 NP_459239.1 276022 D 99287 CDS NP_459240.1 16763625 1251753 278219..278608 1 NC_003197.1 lyase 278608 yaeR 1251753 yaeR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lyase NP_459240.1 278219 D 99287 CDS NP_459241.1 16763626 1251754 278671..279963 1 NC_003197.1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 279963 tilS 1251754 tilS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA(Ile)-lysidine synthetase NP_459241.1 278671 D 99287 CDS NP_459242.1 16763627 1251755 complement(280047..280307) 1 NC_003197.1 Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Rho-binding antiterminator 280307 rof 1251755 rof Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Rho-binding antiterminator NP_459242.1 280047 R 99287 CDS NP_459243.1 16763628 1251756 complement(280294..280512) 1 NC_003197.1 hypothetical protein 280512 1251756 STM0238 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459243.1 280294 R 99287 CDS NP_459244.1 16763629 1251757 280692..281237 1 NC_003197.1 hypothetical 20.8 kDa protein in mesJ-cutF intergenic region (SW:YAEQ_SALTY); hypothetical protein 281237 1251757 STM0239 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459244.1 280692 D 99287 CDS NP_459245.1 16763630 1251758 281234..281656 1 NC_003197.1 putative-tRNA hydrolase domain; hydrolase domain-containing protein 281656 yaeJ 1251758 yaeJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrolase domain-containing protein NP_459245.1 281234 D 99287 CDS NP_459246.1 16763631 1251760 complement(282467..284185) 1 NC_003197.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); proline--tRNA ligase 284185 proS 1251760 proS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 proline--tRNA ligase NP_459246.1 282467 R 99287 CDS NP_459247.1 16763632 1251761 complement(284296..285003) 1 NC_003197.1 regulator 285003 yaeB 1251761 yaeB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulator NP_459247.1 284296 R 99287 CDS NP_459248.1 16763633 1251762 complement(285000..285404) 1 NC_003197.1 colanic acid synthesis regulator 285404 rcsF 1251762 rcsF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 colanic acid synthesis regulator NP_459248.1 285000 R 99287 CDS NP_459249.1 16763634 1251763 complement(285523..286338) 1 NC_003197.1 DL-methionine ABC transporter substrate-binding protein MetQ 286338 metQ 1251763 metQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DL-methionine ABC transporter substrate-binding protein MetQ NP_459249.1 285523 R 99287 CDS NP_459250.1 16763635 1251764 complement(286377..287030) 1 NC_003197.1 part of the MetNIQ methionine uptake system; DL-methionine ABC transporter permease MetI 287030 metI 1251764 metI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DL-methionine ABC transporter permease MetI NP_459250.1 286377 R 99287 CDS NP_459251.1 16763636 1251765 complement(287023..288054) 1 NC_003197.1 part of the metNIQ transport system for methionine; DL-methionine ABC transporter ATP-binding protein MetN 288054 metN 1251765 metN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DL-methionine ABC transporter ATP-binding protein MetN NP_459251.1 287023 R 99287 CDS NP_459252.1 16763637 1251766 288244..288810 1 NC_003197.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase 288810 yaeD 1251766 yaeD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase NP_459252.1 288244 D 99287 CDS NP_459253.1 16763638 1251773 295069..295872 1 NC_003197.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 295872 dkgB 1251773 dkgB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2,5-diketo-D-gluconate reductase B NP_459253.1 295069 D 99287 CDS NP_459254.1 16763639 1251774 complement(295893..296807) 1 NC_003197.1 LysR family transcriptional regulator 296807 yafC 1251774 yafC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_459254.1 295893 R 99287 CDS NP_459255.1 16763640 1251775 296912..298087 1 NC_003197.1 drug efflux protein 298087 1251775 STM0257 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 drug efflux protein NP_459255.1 296912 D 99287 CDS NP_459256.1 16763641 1251776 298240..299019 1 NC_003197.1 hypothetical protein 299019 1251776 STM0258 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459256.1 298240 D 99287 CDS NP_459257.1 16763642 1251777 299097..299867 1 NC_003197.1 methyltransferase 299867 yafE 1251777 yafE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methyltransferase NP_459257.1 299097 D 99287 CDS NP_459258.1 16763643 1251778 complement(299923..301290) 1 NC_003197.1 catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; membrane-bound lytic murein transglycosylase D 301290 mltD 1251778 mltD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane-bound lytic murein transglycosylase D NP_459258.1 299923 R 99287 CDS NP_459259.1 16763644 1251779 complement(301362..302117) 1 NC_003197.1 catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase 302117 gloB 1251779 gloB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydroxyacylglutathione hydrolase NP_459259.1 301362 R 99287 CDS NP_459260.1 16763645 1251780 302152..302874 1 NC_003197.1 SAM-dependent methyltransferase 302874 yafS 1251780 yafS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SAM-dependent methyltransferase NP_459260.1 302152 D 99287 CDS NP_459261.1 16763646 1251781 complement(302871..303338) 1 NC_003197.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 303338 rnhA 1251781 rnhA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonuclease H NP_459261.1 302871 R 99287 CDS NP_459262.1 16763647 1251782 303402..304133 1 NC_003197.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 304133 dnaQ 1251782 dnaQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase III subunit epsilon NP_459262.1 303402 D 99287 CDS NP_459263.1 16763648 1251784 complement(304665..305720) 1 NC_003197.1 cytoplasmic protein 305720 1251784 STM0266 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459263.1 304665 R 99287 CDS NP_459264.1 16763649 1251785 complement(305731..306726) 1 NC_003197.1 cytoplasmic protein 306726 1251785 STM0267 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459264.1 305731 R 99287 CDS NP_459265.1 16763650 1251786 complement(306723..308606) 1 NC_003197.1 cytoplasmic protein 308606 1251786 STM0268 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459265.1 306723 R 99287 CDS NP_459266.1 16763651 1251787 complement(308622..309116) 1 NC_003197.1 cytoplasmic protein 309116 1251787 STM0269 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459266.1 308622 R 99287 CDS NP_459267.1 16763652 1251788 complement(309113..309937) 1 NC_003197.1 cytoplasmic protein 309937 1251788 STM0270 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459267.1 309113 R 99287 CDS NP_459268.1 16763653 1251789 complement(309924..310826) 1 NC_003197.1 cytoplasmic protein 310826 1251789 STM0271 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459268.1 309924 R 99287 CDS NP_459269.1 16763654 1251790 311194..313833 1 NC_003197.1 chaperone ATPase 313833 1251790 STM0272 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone ATPase NP_459269.1 311194 D 99287 CDS NP_459270.1 16763655 1251791 313933..314475 1 NC_003197.1 cytoplasmic protein 314475 1251791 STM0273 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459270.1 313933 D 99287 CDS NP_459271.1 16763656 1251792 314499..316007 1 NC_003197.1 cytoplasmic protein 316007 1251792 STM0274 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459271.1 314499 D 99287 CDS NP_459272.1 16763657 1251793 316070..316180 1 NC_003197.1 invasol SirA 316180 1251793 STM0274A Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 invasol SirA NP_459272.1 316070 D 99287 CDS NP_459273.2 39546290 1251794 316193..316639 1 NC_003197.1 hypothetical protein 316639 1251794 STM0275.s Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459273.2 316193 D 99287 CDS NP_459274.1 16763659 1251795 316893..317378 1 NC_003197.1 cytoplasmic protein 317378 1251795 STM0276 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459274.1 316893 D 99287 CDS NP_459275.1 16763660 1251796 317683..318168 1 NC_003197.1 cytoplasmic protein 318168 1251796 STM0277 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459275.1 317683 D 99287 CDS NP_459276.1 16763661 1251797 318153..318536 1 NC_003197.1 periplasmic protein 318536 1251797 STM0278 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_459276.1 318153 D 99287 CDS NP_459277.1 16763662 1251798 318679..319164 1 NC_003197.1 cytoplasmic protein 319164 1251798 STM0279 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459277.1 318679 D 99287 CDS NP_459278.1 16763663 1251799 319231..319767 1 NC_003197.1 cytoplasmic protein 319767 1251799 STM0280 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459278.1 319231 D 99287 CDS NP_459279.1 16763664 1251800 319771..321114 1 NC_003197.1 cytoplasmic protein 321114 1251800 STM0281 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459279.1 319771 D 99287 CDS NP_459280.1 16763665 1251801 321111..322415 1 NC_003197.1 OmpA family outer membrane protein 322415 1251801 STM0282 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 OmpA family outer membrane protein NP_459280.1 321111 D 99287 CDS NP_459281.1 16763666 1251802 322420..323193 1 NC_003197.1 inner membrane protein 323193 1251802 STM0283 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459281.1 322420 D 99287 CDS NP_459282.1 16763667 1251803 323396..323827 1 NC_003197.1 shiga-like toxin A subunit 323827 1251803 STM0284 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 shiga-like toxin A subunit NP_459282.1 323396 D 99287 CDS NP_459283.1 16763668 1251804 323861..327730 1 NC_003197.1 inner membrane protein 327730 1251804 STM0285 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459283.1 323861 D 99287 CDS NP_459284.1 16763669 1251805 327730..328518 1 NC_003197.1 cytoplasmic protein 328518 1251805 STM0286 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459284.1 327730 D 99287 CDS NP_459285.1 16763670 1251806 328515..328931 1 NC_003197.1 cytoplasmic protein 328931 1251806 STM0287 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459285.1 328515 D 99287 CDS NP_459286.1 16763671 1251807 328955..329476 1 NC_003197.1 cytoplasmic protein 329476 1251807 STM0288 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459286.1 328955 D 99287 CDS NP_459287.1 16763672 1251808 329873..332062 1 NC_003197.1 cytoplasmic protein 332062 1251808 STM0289 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459287.1 329873 D 99287 CDS NP_459288.1 16763673 1251809 332086..332532 1 NC_003197.1 cytoplasmic protein 332532 1251809 STM0290 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459288.1 332086 D 99287 CDS NP_459289.1 16763674 1251810 332551..336645 1 NC_003197.1 RHS family protein 336645 1251810 STM0291 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RHS family protein NP_459289.1 332551 D 99287 CDS NP_459290.1 16763675 1251811 337095..337835 1 NC_003197.1 RHS family protein 337835 1251811 STM0292 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RHS family protein NP_459290.1 337095 D 99287 CDS NP_459291.1 16763676 1251812 337829..338275 1 NC_003197.1 cytoplasmic protein 338275 1251812 STM0293 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459291.1 337829 D 99287 CDS NP_459292.1 16763677 1251813 338838..339275 1 NC_003197.1 cytoplasmic protein 339275 1251813 STM0294 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459292.1 338838 D 99287 CDS NP_945154.1 39546291 2673758 complement(339328..339603) 1 NC_003197.1 cytoplasmic protein 339603 2673758 STM0294.1N Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_945154.1 339328 R 99287 CDS YP_006892377.1 409994398 13865716 complement(339629..339871) 1 NC_003197.1 cytoplasmic protein 339871 13865716 STM04655 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein YP_006892377.1 339629 R 99287 CDS NP_459293.1 16763678 1251814 340044..340352 1 NC_003197.1 cytoplasmic protein 340352 1251814 STM0295 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459293.1 340044 D 99287 CDS NP_459297.1 16763682 1251818 342209..342721 1 NC_003197.1 major pilus subunit SafA 342721 safA 1251818 safA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 major pilus subunit SafA NP_459297.1 342209 D 99287 CDS NP_459298.1 16763683 1251819 342829..343542 1 NC_003197.1 fimbrial assembly chaperone 343542 safB 1251819 safB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial assembly chaperone NP_459298.1 342829 D 99287 CDS NP_459299.1 16763684 1251820 343566..346076 1 NC_003197.1 fimbrial usher 346076 safC 1251820 safC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial usher NP_459299.1 343566 D 99287 CDS NP_459300.1 16763685 1251821 346098..346568 1 NC_003197.1 fimbrial subunit 346568 safD 1251821 safD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial subunit NP_459300.1 346098 D 99287 CDS NP_459301.1 16763686 1251822 346974..347795 1 NC_003197.1 xylanase/chitin deacetylase 347795 ybeJ 1251822 ybeJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 xylanase/chitin deacetylase NP_459301.1 346974 D 99287 CDS YP_006892378.1 409994399 13865730 347875..348135 1 NC_003197.1 hypothetical protein 348135 13865730 STM04665 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892378.1 347875 D 99287 CDS NP_459302.1 16763687 1251823 348610..349557 1 NC_003197.1 SinR protein (SW:SINR_SALTY); HTH-type transcriptional regulator SinR 349557 sinR 1251823 sinR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator SinR NP_459302.1 348610 D 99287 CDS NP_459303.1 16763688 1251824 349674..349889 1 NC_003197.1 cytoplasmic protein 349889 1251824 STM0305 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459303.1 349674 D 99287 CDS NP_459304.1 16763689 1251825 complement(349893..350612) 1 NC_003197.1 adhesin/invasin protein PagN 350612 1251825 STM0306 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 adhesin/invasin protein PagN NP_459304.1 349893 R 99287 CDS NP_459305.1 16763690 1251826 complement(350943..351350) 1 NC_003197.1 VirG-like protein 351350 1251826 STM0307 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 VirG-like protein NP_459305.1 350943 R 99287 CDS NP_459306.1 16763691 1251827 complement(351721..352488) 1 NC_003197.1 amidohydrolase 352488 yafV 1251827 yafV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amidohydrolase NP_459306.1 351721 R 99287 CDS NP_459307.1 16763692 1251828 complement(352597..355041) 1 NC_003197.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 355041 fadE 1251828 fadE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acyl-CoA dehydrogenase NP_459307.1 352597 R 99287 CDS NP_459308.1 16763693 1251829 355281..355859 1 NC_003197.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 355859 gmhA 1251829 gmhA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoheptose isomerase NP_459308.1 355281 D 99287 CDS NP_459309.1 16763694 1251830 356072..356839 1 NC_003197.1 glutamine amidotransferase 356839 yafJ 1251830 yafJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamine amidotransferase NP_459309.1 356072 D 99287 CDS NP_459310.1 16763695 1251831 complement(356810..357550) 1 NC_003197.1 periplasmic protein 357550 yafK 1251831 yafK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_459310.1 356810 R 99287 CDS NP_459311.1 16763696 1251832 357800..358855 1 NC_003197.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 358855 dinP 1251832 dinP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase IV NP_459311.1 357800 D 99287 CDS YP_006892379.1 409994400 13865708 359074..360048 1 NC_003197.1 hypothetical protein 360048 13865708 STM04675 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892379.1 359074 D 99287 CDS NP_459312.1 16763697 1251834 360203..360817 1 NC_003197.1 peptide chain release factor 360817 prfH 1251834 prfH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptide chain release factor NP_459312.1 360203 D 99287 CDS NP_459313.1 16763698 1251835 complement(360973..362430) 1 NC_003197.1 aminoacyl-histidine dipeptidase 362430 pepD 1251835 pepD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aminoacyl-histidine dipeptidase NP_459313.1 360973 R 99287 CDS NP_459314.1 16763699 1251836 362679..363137 1 NC_003197.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine phosphoribosyltransferase 363137 gpt 1251836 gpt Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 xanthine phosphoribosyltransferase NP_459314.1 362679 D 99287 CDS NP_459315.1 16763700 1251837 363226..364470 1 NC_003197.1 fermentation/respiration switch protein; forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; esterase FrsA 364470 frsA 1251837 frsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 esterase FrsA NP_459315.1 363226 D 99287 CDS NP_459316.1 16763701 1251838 364528..364929 1 NC_003197.1 involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; sigma factor-binding protein Crl 364929 crl 1251838 crl Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sigma factor-binding protein Crl NP_459316.1 364528 D 99287 CDS NP_459317.1 16763702 1251839 complement(364980..366032) 1 NC_003197.1 outer membrane phosphoporin protein E 366032 phoE 1251839 phoE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane phosphoporin protein E NP_459317.1 364980 R 99287 CDS NP_459318.1 16763703 1251840 366315..367418 1 NC_003197.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; glutamate 5-kinase 367418 proB 1251840 proB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamate 5-kinase NP_459318.1 366315 D 99287 CDS NP_459319.1 16763704 1251841 367430..368680 1 NC_003197.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 368680 proA 1251841 proA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 gamma-glutamyl phosphate reductase NP_459319.1 367430 D 99287 CDS NP_459321.1 16763706 1251844 complement(369197..369997) 1 NC_003197.1 IS3 transposase 369997 1251844 STM0325 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 IS3 transposase NP_459321.1 369197 R 99287 CDS NP_459322.1 16763707 1251846 370739..371062 1 NC_003197.1 cytoplasmic protein 371062 1251846 STM0327 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459322.1 370739 D 99287 CDS NP_459323.2 39546292 1251847 371304..372641 1 NC_003197.1 permease 372641 1251847 STM0328.s Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_459323.2 371304 D 99287 CDS NP_459324.1 16763709 1251848 372773..374194 1 NC_003197.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; 3-isopropylmalate dehydratase large subunit 374194 1251848 STM0329 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-isopropylmalate dehydratase large subunit NP_459324.1 372773 D 99287 CDS NP_459325.1 16763710 1251849 374196..374822 1 NC_003197.1 3-isopropylmalate isomerase small subunit 374822 1251849 STM0330 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-isopropylmalate isomerase small subunit NP_459325.1 374196 D 99287 CDS NP_459326.1 16763711 1251850 374837..375715 1 NC_003197.1 fumarylacetoacetate hydrolase 375715 1251850 STM0331 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fumarylacetoacetate hydrolase NP_459326.1 374837 D 99287 CDS NP_459327.1 16763712 1251851 375715..376629 1 NC_003197.1 hydrolase/acyltransferase 376629 1251851 STM0332 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrolase/acyltransferase NP_459327.1 375715 D 99287 CDS NP_459328.1 16763713 1251852 376663..377628 1 NC_003197.1 LysR family transcriptional regulator 377628 1251852 STM0333 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_459328.1 376663 D 99287 CDS NP_459329.1 16763714 1251853 complement(377573..377845) 1 NC_003197.1 cytoplasmic protein 377845 1251853 STM0334 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459329.1 377573 R 99287 CDS NP_459330.1 16763715 1251854 378536..378934 1 NC_003197.1 outer membrane protein 378934 1251854 STM0335 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_459330.1 378536 D 99287 CDS NP_459331.1 16763716 1251855 complement(378981..379739) 1 NC_003197.1 fimbrial chaperone 379739 stbE 1251855 stbE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial chaperone NP_459331.1 378981 R 99287 CDS NP_459332.1 16763717 1251856 complement(379705..381030) 1 NC_003197.1 fimbrial usher 381030 stbD 1251856 stbD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial usher NP_459332.1 379705 R 99287 CDS NP_459333.1 16763718 1251857 complement(381035..383596) 1 NC_003197.1 export and assembly of type 1 fimbriae; fimbrial usher 383596 stbC 1251857 stbC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial usher NP_459333.1 381035 R 99287 CDS NP_459334.1 16763719 1251858 complement(383580..384341) 1 NC_003197.1 fimbrial chaperone 384341 stbB 1251858 stbB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial chaperone NP_459334.1 383580 R 99287 CDS NP_459335.1 16763720 1251859 complement(384403..384939) 1 NC_003197.1 fimbrial major subunit 384939 stbA 1251859 stbA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial major subunit NP_459335.1 384403 R 99287 CDS NP_459336.1 16763721 1251860 385573..386337 1 NC_003197.1 inner membrane protein 386337 1251860 STM0341 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459336.1 385573 D 99287 CDS NP_459337.1 16763722 1251861 386310..386609 1 NC_003197.1 periplasmic protein 386609 1251861 STM0342 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_459337.1 386310 D 99287 CDS NP_459338.1 16763723 1251862 387109..388683 1 NC_003197.1 diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain-containing protein 388683 1251862 STM0343 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diguanylate cyclase/phosphodiesterase domain-containing protein NP_459338.1 387109 D 99287 CDS NP_459339.1 16763724 1251863 388783..389526 1 NC_003197.1 response regulator 389526 1251863 STM0344 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 response regulator NP_459339.1 388783 D 99287 CDS NP_459340.1 16763725 1251864 389499..389987 1 NC_003197.1 inner membrane protein 389987 1251864 STM0345 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459340.1 389499 D 99287 CDS NP_459341.1 16763726 1251865 390388..390912 1 NC_003197.1 outer membrane protein 390912 1251865 STM0346 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_459341.1 390388 D 99287 CDS NP_459342.1 16763727 1251866 391056..391697 1 NC_003197.1 response regulator 391697 1251866 STM0347 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 response regulator NP_459342.1 391056 D 99287 CDS NP_459343.1 16763728 1251867 391708..391932 1 NC_003197.1 inner membrane protein 391932 1251867 STM0348 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459343.1 391708 D 99287 CDS NP_459344.1 16763729 1251868 391990..392349 1 NC_003197.1 outer membrane lipoprotein 392349 1251868 STM0349 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_459344.1 391990 D 99287 CDS NP_459345.2 39546293 1251869 complement(392419..393876) 1 NC_003197.1 outer membrane efflux-like protein 393876 1251869 STM0350.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane efflux-like protein NP_459345.2 392419 R 99287 CDS NP_459346.1 16763731 1251870 complement(393893..397060) 1 NC_003197.1 cation efflux system protein 397060 1251870 STM0351 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cation efflux system protein NP_459346.1 393893 R 99287 CDS NP_459347.2 39546294 1251871 complement(397057..398262) 1 NC_003197.1 cation efflux system protein 398262 1251871 STM0352.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cation efflux system protein NP_459347.2 397057 R 99287 CDS NP_459348.1 16763733 1251872 398560..400848 1 NC_003197.1 cation transport ATPase 400848 1251872 STM0353 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cation transport ATPase NP_459348.1 398560 D 99287 CDS NP_459349.1 16763734 1251873 400860..401324 1 NC_003197.1 transcriptional regulator 401324 1251873 STM0354 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_459349.1 400860 D 99287 CDS NP_459350.1 16763735 1251874 401402..401596 1 NC_003197.1 copper chaperone 401596 1251874 STM0355 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 copper chaperone NP_459350.1 401402 D 99287 CDS NP_459351.1 16763736 1251875 401889..403142 1 NC_003197.1 inner membrane protein 403142 1251875 STM0356 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459351.1 401889 D 99287 CDS NP_459352.1 16763737 1251876 403331..405289 1 NC_003197.1 type III restriction-modification system; methyltransferase (SW:T3MO_SALTY); restriction system; type III restriction-modification system methyltransferase 405289 mod 1251876 mod Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 type III restriction-modification system methyltransferase NP_459352.1 403331 D 99287 CDS NP_459353.2 39546295 1251877 405296..408271 1 NC_003197.1 type III restriction-modification system enzyme (SW:T3RE_SALTY); DNA helicase; type III restriction-modification system DNA helicase 408271 res 1251877 res Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 type III restriction-modification system DNA helicase NP_459353.2 405296 D 99287 CDS NP_459354.1 16763739 1251878 408548..408649 1 NC_003197.1 cytoplasmic protein 408649 1251878 STM0359 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459354.1 408548 D 99287 CDS NP_459355.1 16763740 1251879 408766..410169 1 NC_003197.1 cytochrome BD2 subunit I 410169 1251879 STM0360 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome BD2 subunit I NP_459355.1 408766 D 99287 CDS NP_459356.1 16763741 1251880 410166..411176 1 NC_003197.1 cytochrome BD2 subunit II 411176 1251880 STM0361 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome BD2 subunit II NP_459356.1 410166 D 99287 CDS NP_459357.1 16763742 1251881 411193..411417 1 NC_003197.1 cytoplasmic protein 411417 1251881 STM0362 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459357.1 411193 D 99287 CDS NP_459358.1 16763743 1251882 411513..412517 1 NC_003197.1 XylS/AraC transcriptional activator; AraC family; AraC family transcriptional regulator 412517 1251882 STM0363 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AraC family transcriptional regulator NP_459358.1 411513 D 99287 CDS NP_459359.1 16763744 1251883 412663..414771 1 NC_003197.1 ferrioxamine B receptor 414771 foxA 1251883 foxA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferrioxamine B receptor NP_459359.1 412663 D 99287 CDS NP_459360.1 16763745 1251884 complement(414812..415444) 1 NC_003197.1 transporter 415444 yahN 1251884 yahN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transporter NP_459360.1 414812 R 99287 CDS NP_459361.1 16763746 1251885 415676..415951 1 NC_003197.1 periplasmic protein 415951 yahO 1251885 yahO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_459361.1 415676 D 99287 CDS NP_459362.1 16763747 1251886 complement(416087..417712) 1 NC_003197.1 propionate catabolism operon regulatory protein (SW:PRPR_SALTY); EBP family; propionate catabolism operon regulatory protein 417712 prpR 1251886 prpR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propionate catabolism operon regulatory protein NP_459362.1 416087 R 99287 CDS NP_459363.1 16763748 1251887 417977..418864 1 NC_003197.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 418864 prpB 1251887 prpB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-methylisocitrate lyase NP_459363.1 417977 D 99287 CDS NP_459364.1 16763749 1251888 418987..420156 1 NC_003197.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; 2-methylcitrate synthase 420156 prpC 1251888 prpC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-methylcitrate synthase NP_459364.1 418987 D 99287 CDS NP_459365.1 16763750 1251889 420196..421647 1 NC_003197.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 421647 prpD 1251889 prpD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-methylcitrate dehydratase NP_459365.1 420196 D 99287 CDS NP_459366.1 16763751 1251890 421688..423574 1 NC_003197.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionate--CoA ligase 423574 prpE 1251890 prpE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propionate--CoA ligase NP_459366.1 421688 D 99287 CDS NP_459367.1 16763752 1251891 complement(423678..424652) 1 NC_003197.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 424652 hemB 1251891 hemB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 delta-aminolevulinic acid dehydratase NP_459367.1 423678 R 99287 CDS NP_459368.1 16763753 1251892 425165..428101 1 NC_003197.1 hypothetical protein 428101 1251892 STM0373 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459368.1 425165 D 99287 CDS NP_459369.1 16763754 1251893 428187..428810 1 NC_003197.1 DNA-binding transcriptional regulator 428810 yaiV 1251893 yaiV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional regulator NP_459369.1 428187 D 99287 CDS NP_459370.2 308065971 1251894 complement(428855..430012) 1 NC_003197.1 penicillin-binding protein 430012 ampH 1251894 ampH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 penicillin-binding protein NP_459370.2 428855 R 99287 CDS NP_459371.1 16763756 1251895 430359..431579 1 NC_003197.1 in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; ABC superfamily transporter 431579 sbmA 1251895 sbmA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC superfamily transporter NP_459371.1 430359 D 99287 CDS NP_459372.1 16763757 1251896 431594..432688 1 NC_003197.1 outer membrane lipoprotein 432688 yaiW 1251896 yaiW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_459372.1 431594 D 99287 CDS NP_459373.1 16763758 1251897 complement(432726..433034) 1 NC_003197.1 inner membrane protein 433034 yaiY 1251897 yaiY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459373.1 432726 R 99287 CDS NP_459374.1 16763759 1251898 433302..433517 1 NC_003197.1 inner membrane protein 433517 yaiZ 1251898 yaiZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459374.1 433302 D 99287 CDS NP_459375.1 16763760 1251899 complement(433543..434637) 1 NC_003197.1 D-alanyl-alanine synthetase A; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase A 434637 ddl 1251899 ddl Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-alanine--D-alanine ligase A NP_459375.1 433543 R 99287 CDS NP_459376.1 16763761 1251900 434715..435428 1 NC_003197.1 inner membrane protein 435428 1251900 STM0381 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459376.1 434715 D 99287 CDS NP_459377.1 16763762 1251901 435597..436808 1 NC_003197.1 permease 436808 1251901 STM0382 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_459377.1 435597 D 99287 CDS NP_459378.2 308065970 1251902 437105..437365 1 NC_003197.1 aids the stabilization of the sigma factor RpoS; anti-adapter protein IraP 437365 1251902 STM0383 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anti-adapter protein IraP NP_459378.2 437105 D 99287 CDS NP_459379.1 16763764 1251903 437717..438037 1 NC_003197.1 phosphate starvation inducible protein 438037 psiF 1251903 psiF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphate starvation inducible protein NP_459379.1 437717 D 99287 CDS NP_459380.1 16763765 1251904 438129..439241 1 NC_003197.1 catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis; diguanylate cyclase AdrA 439241 adrA 1251904 adrA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diguanylate cyclase AdrA NP_459380.1 438129 D 99287 CDS NP_459381.1 16763766 1251905 complement(439256..440065) 1 NC_003197.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 440065 proC 1251905 proC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyrroline-5-carboxylate reductase NP_459381.1 439256 R 99287 CDS NP_459382.1 16763767 1251906 440205..440660 1 NC_003197.1 hypothetical protein 440660 1251906 STM0387 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459382.1 440205 D 99287 CDS NP_459383.1 16763768 1251907 440845..441390 1 NC_003197.1 shikimate kinase 441390 aroL 1251907 aroL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 shikimate kinase NP_459383.1 440845 D 99287 CDS NP_459384.1 16763769 1251908 441417..441608 1 NC_003197.1 cytoplasmic protein 441608 yaiA 1251908 yaiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459384.1 441417 D 99287 CDS NP_459385.1 16763770 1251909 441859..442536 1 NC_003197.1 aro operon protein 442536 aroM 1251909 aroM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aro operon protein NP_459385.1 441859 D 99287 CDS NP_459386.1 16763771 1251910 442607..442891 1 NC_003197.1 hypothetical protein 442891 1251910 STM0391 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459386.1 442607 D 99287 CDS NP_459387.1 16763772 1251911 complement(442929..443840) 1 NC_003197.1 Required for efficient pilin antigenic variation; recombination associated protein 443840 rdgC 1251911 rdgC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 recombination associated protein NP_459387.1 442929 R 99287 CDS NP_459388.1 16763773 1251912 443966..444874 1 NC_003197.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 444874 yajF 1251912 yajF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fructokinase NP_459388.1 443966 D 99287 CDS NP_459389.1 16763774 1251913 complement(444896..446068) 1 NC_003197.1 member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; MFS family arabinose polymer transporter 446068 araJ 1251913 araJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family arabinose polymer transporter NP_459389.1 444896 R 99287 CDS NP_459390.1 16763775 1251914 complement(446241..449381) 1 NC_003197.1 with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; ATP-dependent dsDNA exonuclease 449381 sbcC 1251914 sbcC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent dsDNA exonuclease NP_459390.1 446241 R 99287 CDS NP_459391.1 16763776 1251915 complement(449378..450580) 1 NC_003197.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; ATP-dependent dsDNA exonuclease 450580 sbcD 1251915 sbcD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent dsDNA exonuclease NP_459391.1 449378 R 99287 CDS NP_459392.1 16763777 1251916 450795..451484 1 NC_003197.1 two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; response regulato PhoB 451484 phoB 1251916 phoB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 response regulato PhoB NP_459392.1 450795 D 99287 CDS NP_459393.1 16763778 1251917 451554..452849 1 NC_003197.1 membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; sensory kinase PhoR 452849 phoR 1251917 phoR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensory kinase PhoR NP_459393.1 451554 D 99287 CDS NP_459394.1 16763779 1251918 453258..454577 1 NC_003197.1 branched-chain amino acid transport system II carrier protein (SW:BRNQ_SALTY); LIVCS family; LIV-II; branched-chain amino acid transport system 2 carrier protein 454577 brnQ 1251918 brnQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 branched-chain amino acid transport system 2 carrier protein NP_459394.1 453258 D 99287 CDS NP_459395.1 16763780 1251919 454652..456022 1 NC_003197.1 cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; proline-specific permease 456022 proY 1251919 proY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 proline-specific permease NP_459395.1 454652 D 99287 CDS NP_459396.1 16763781 1251920 456184..458001 1 NC_003197.1 maltodextrin glucosidase 458001 malZ 1251920 malZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 maltodextrin glucosidase NP_459396.1 456184 D 99287 CDS NP_459397.1 16763782 1251921 complement(458073..458675) 1 NC_003197.1 thiol-alkyl hydroperoxide reductase 458675 1251921 STM0402 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiol-alkyl hydroperoxide reductase NP_459397.1 458073 R 99287 CDS NP_459398.1 16763783 1251922 complement(458885..459466) 1 NC_003197.1 Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; acyl carrier protein phosphodiesterase 459466 yajB 1251922 yajB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acyl carrier protein phosphodiesterase NP_459398.1 458885 R 99287 CDS NP_459399.1 16763784 1251923 459560..460624 1 NC_003197.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 460624 queA 1251923 queA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 S-adenosylmethionine--tRNA ribosyltransferase-isomerase NP_459399.1 459560 D 99287 CDS NP_459400.1 16763785 1251924 460821..461948 1 NC_003197.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 461948 tgt 1251924 tgt Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 queuine tRNA-ribosyltransferase NP_459400.1 460821 D 99287 CDS NP_459401.1 16763786 1251925 461971..462303 1 NC_003197.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase membrane subunit 462303 yajC 1251925 yajC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 preprotein translocase membrane subunit NP_459401.1 461971 D 99287 CDS NP_459402.1 16763787 1251926 462331..464178 1 NC_003197.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 464178 secD 1251926 secD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 preprotein translocase subunit SecD NP_459402.1 462331 D 99287 CDS NP_459403.1 16763788 1251927 464189..465160 1 NC_003197.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 465160 secF 1251927 secF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 preprotein translocase subunit SecF NP_459403.1 464189 D 99287 CDS NP_459404.1 16763789 1251928 465308..465673 1 NC_003197.1 hypothetical protein 465673 1251928 STM0409 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459404.1 465308 D 99287 CDS NP_459405.1 16763790 1251929 465699..466391 1 NC_003197.1 regulatory protein 466391 1251929 STM0410 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_459405.1 465699 D 99287 CDS NP_459406.1 16763791 1251930 466561..466908 1 NC_003197.1 hypothetical 12.6 kDa protein in secF-tsx intergenic region (SW:YAJD_SALTY); hypothetical protein 466908 1251930 STM0411 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459406.1 466561 D 99287 CDS NP_459408.1 16763793 1251932 complement(467537..468400) 1 NC_003197.1 nucleoside-specific channel-forming protein TSX (SW:TSX_SALTY); receptor of phage T6 and colicin K; nucleoside-specific channel-forming protein 468400 tsx 1251932 tsx Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleoside-specific channel-forming protein NP_459408.1 467537 R 99287 CDS NP_459409.1 16763794 1251933 complement(468700..469239) 1 NC_003197.1 outer membrane lipoprotein 469239 yajI 1251933 yajI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_459409.1 468700 R 99287 CDS NP_459410.1 16763795 1251934 469391..469840 1 NC_003197.1 transcriptional repressor NrdR 469840 nrdR 1251934 nrdR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional repressor NrdR NP_459410.1 469391 D 99287 CDS NP_459411.1 16763796 1251935 469844..470947 1 NC_003197.1 riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 470947 ribD 1251935 ribD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase NP_459411.1 469844 D 99287 CDS NP_459412.1 16763797 1251936 471036..471506 1 NC_003197.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 471506 ribH 1251936 ribH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 6,7-dimethyl-8-ribityllumazine synthase NP_459412.1 471036 D 99287 CDS NP_459413.1 16763798 1251937 471527..471946 1 NC_003197.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 471946 nusB 1251937 nusB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcription antitermination protein NusB NP_459413.1 471527 D 99287 CDS NP_459414.1 16763799 1251938 472025..473002 1 NC_003197.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 473002 thiL 1251938 thiL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiamine monophosphate kinase NP_459414.1 472025 D 99287 CDS NP_459415.1 16763800 1251939 472980..473495 1 NC_003197.1 hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 473495 pgpA 1251939 pgpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphatidylglycerophosphatase A NP_459415.1 472980 D 99287 CDS NP_459416.1 16763801 1251940 complement(473599..474573) 1 NC_003197.1 2-carboxybenzaldehyde reductase 474573 yajO 1251940 yajO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-carboxybenzaldehyde reductase NP_459416.1 473599 R 99287 CDS NP_459417.1 16763802 1251941 complement(474630..476492) 1 NC_003197.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 476492 dxs 1251941 dxs Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1-deoxy-D-xylulose-5-phosphate synthase NP_459417.1 474630 R 99287 CDS NP_459418.1 16763803 1251942 complement(476516..477415) 1 NC_003197.1 geranyltranstransferase 477415 ispA 1251942 ispA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 geranyltranstransferase NP_459418.1 476516 R 99287 CDS NP_459419.1 16763804 1251943 complement(477416..477658) 1 NC_003197.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 477658 xseB 1251943 xseB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 exodeoxyribonuclease VII small subunit NP_459419.1 477416 R 99287 CDS NP_459420.1 16763805 1251944 477868..479316 1 NC_003197.1 Thiamine biosynthesis protein ThiI; Required for the synthesis of the thiazole moiety; tRNA sulfurtransferase 479316 thiI 1251944 thiI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA sulfurtransferase NP_459420.1 477868 D 99287 CDS NP_459421.1 16763806 1251945 complement(479360..480157) 1 NC_003197.1 probable membrane component of 2-aminoethylphosphonate transporter PhnV; 2-aminoethylphosphonate ABC transporter permease PhnV 480157 phnV 1251945 phnV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-aminoethylphosphonate ABC transporter permease PhnV NP_459421.1 479360 R 99287 CDS NP_459422.1 16763807 1251946 complement(480160..481020) 1 NC_003197.1 probable membrane component of 2-aminoethylphosphonate transporter PhnU; 2-aminoethylphosphonate ABC transporter permease PhnU 481020 phnU 1251946 phnU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-aminoethylphosphonate ABC transporter permease PhnU NP_459422.1 480160 R 99287 CDS NP_459423.1 16763808 1251947 complement(481023..482132) 1 NC_003197.1 probable ATPase component of 2-aminoethylphosphonate transporter PhnT; 2-aminoethylphosphonate ABC transporter ATP-binding protein PhnT 482132 phnT 1251947 phnT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-aminoethylphosphonate ABC transporter ATP-binding protein PhnT NP_459423.1 481023 R 99287 CDS NP_459424.1 16763809 1251948 complement(482138..483151) 1 NC_003197.1 probable periplasmic binding-protein of the2-aminoethylphosphonate transporter phnS; 2-aminoethylphosphonate ABC transporter substrate-binding protein PhnS 483151 phnS 1251948 phnS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-aminoethylphosphonate ABC transporter substrate-binding protein PhnS NP_459424.1 482138 R 99287 CDS NP_459425.1 16763810 1251949 complement(483349..484068) 1 NC_003197.1 probable repressor protein of GntR family PhnR; 2-aminoethylphosphonate degradation operon transcriptional regulator 484068 phnR 1251949 phnR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-aminoethylphosphonate degradation operon transcriptional regulator NP_459425.1 483349 R 99287 CDS NP_459426.1 16763811 1251950 484208..485311 1 NC_003197.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 485311 phnW 1251950 phnW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-aminoethylphosphonate--pyruvate transaminase NP_459426.1 484208 D 99287 CDS NP_459427.1 16763812 1251951 485318..486130 1 NC_003197.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 486130 phnX 1251951 phnX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphonoacetaldehyde hydrolase NP_459427.1 485318 D 99287 CDS NP_459428.1 16763813 1251952 complement(486227..486817) 1 NC_003197.1 oxidative-stress-resistance chaperone 486817 1251952 STM0433 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidative-stress-resistance chaperone NP_459428.1 486227 R 99287 CDS NP_459429.1 16763814 1251953 complement(486780..487691) 1 NC_003197.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 487691 apbA 1251953 apbA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-dehydropantoate 2-reductase NP_459429.1 486780 R 99287 CDS NP_459430.2 161353609 1251954 487817..488308 1 NC_003197.1 the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; phage host factor 488308 yajQ 1251954 yajQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage host factor NP_459430.2 487817 D 99287 CDS NP_459431.2 39546296 1251955 complement(488355..489719) 1 NC_003197.1 MFS family transporter 489719 yajR 1251955 yajR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family transporter NP_459431.2 488355 R 99287 CDS NP_459433.1 16763818 1251957 490256..491767 1 NC_003197.1 periplasmic protein 491767 1251957 STM0437 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_459433.1 490256 D 99287 CDS NP_459434.1 16763819 1251958 491989..493272 1 NC_003197.1 TPR repeat; hypothetical protein 493272 1251958 STM0438 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459434.1 491989 D 99287 CDS NP_459435.1 16763820 1251959 complement(493354..494244) 1 NC_003197.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 494244 cyoE 1251959 cyoE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protoheme IX farnesyltransferase NP_459435.1 493354 R 99287 CDS NP_459436.1 16763821 1251960 complement(494256..494585) 1 NC_003197.1 cytochrome o ubiquinol oxidase subunit IV 494585 cyoD 1251960 cyoD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome o ubiquinol oxidase subunit IV NP_459436.1 494256 R 99287 CDS NP_459437.1 16763822 1251961 complement(494585..495199) 1 NC_003197.1 cytochrome o ubiquinol oxidase subunit III 495199 cyoC 1251961 cyoC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome o ubiquinol oxidase subunit III NP_459437.1 494585 R 99287 CDS NP_459438.1 16763823 1251962 complement(495189..497180) 1 NC_003197.1 cytochrome o ubiquinol oxidase subunit I 497180 cyoB 1251962 cyoB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome o ubiquinol oxidase subunit I NP_459438.1 495189 R 99287 CDS NP_459439.1 16763824 1251963 complement(497191..498147) 1 NC_003197.1 cytochrome o ubiquinol oxidase subunit II 498147 cyoA 1251963 cyoA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome o ubiquinol oxidase subunit II NP_459439.1 497191 R 99287 CDS NP_459440.1 16763825 1251964 complement(498600..500075) 1 NC_003197.1 in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; MFS family muropeptide transporter 500075 ampG 1251964 ampG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family muropeptide transporter NP_459440.1 498600 R 99287 CDS NP_459441.2 161353608 1251965 complement(500119..500697) 1 NC_003197.1 lipoprotein 500697 yajG 1251965 yajG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein NP_459441.2 500119 R 99287 CDS NP_459442.1 16763827 1251966 501001..501318 1 NC_003197.1 positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; transcriptional regulator BolA 501318 bolA 1251966 bolA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator BolA NP_459442.1 501001 D 99287 CDS NP_459443.1 16763828 1251967 501665..502963 1 NC_003197.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 502963 tig 1251967 tig Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 trigger factor NP_459443.1 501665 D 99287 CDS NP_459444.1 16763829 1251968 503210..503833 1 NC_003197.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 503833 clpP 1251968 clpP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent Clp protease proteolytic subunit NP_459444.1 503210 D 99287 CDS NP_459445.1 16763830 1251969 504085..505356 1 NC_003197.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 505356 clpX 1251969 clpX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent protease ATP-binding subunit ClpX NP_459445.1 504085 D 99287 CDS NP_459446.1 16763831 1251970 505542..507896 1 NC_003197.1 Lon protease 507896 lon 1251970 lon Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Lon protease NP_459446.1 505542 D 99287 CDS NP_459447.1 16763832 1251971 508105..508377 1 NC_003197.1 histone-like DNA-binding protein; transcriptional regulator HU subunit beta 508377 hupB 1251971 hupB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator HU subunit beta NP_459447.1 508105 D 99287 CDS NP_459448.1 16763833 1251972 508668..510539 1 NC_003197.1 peptidyl-prolyl cis-trans isomerase 510539 cypD 1251972 cypD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidyl-prolyl cis-trans isomerase NP_459448.1 508668 D 99287 CDS NP_459449.1 16763834 1251973 510688..511062 1 NC_003197.1 DNA uptake protein 511062 ybaV 1251973 ybaV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA uptake protein NP_459449.1 510688 D 99287 CDS NP_459450.1 16763835 1251974 511166..511564 1 NC_003197.1 esterase 511564 ybaW 1251974 ybaW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 esterase NP_459450.1 511166 D 99287 CDS NP_459451.1 16763836 1251975 complement(511670..512365) 1 NC_003197.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; 7-cyano-7-deazaguanine synthase 512365 ybaX 1251975 ybaX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 7-cyano-7-deazaguanine synthase NP_459451.1 511670 R 99287 CDS NP_459452.1 16763837 1251976 complement(512430..514130) 1 NC_003197.1 ABC transporter substrate-binding protein 514130 ybaE 1251976 ybaE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter substrate-binding protein NP_459452.1 512430 R 99287 CDS NP_459453.1 16763838 1251977 514231..515049 1 NC_003197.1 HMP-PP phosphatase 515049 1251977 STM0457 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HMP-PP phosphatase NP_459453.1 514231 D 99287 CDS NP_459454.1 16763839 1251978 complement(515099..516154) 1 NC_003197.1 cysteine synthase/cystathionine beta-synthase 516154 1251978 STM0458 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cysteine synthase/cystathionine beta-synthase NP_459454.1 515099 R 99287 CDS NP_459455.1 16763840 1251979 516267..516725 1 NC_003197.1 AsnC family transcriptional regulator 516725 ybaO 1251979 ybaO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AsnC family transcriptional regulator NP_459455.1 516267 D 99287 CDS NP_459456.1 16763841 1251980 516766..518538 1 NC_003197.1 multidrug ABC transporter permease/ATP-binding protein 518538 mdlA 1251980 mdlA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug ABC transporter permease/ATP-binding protein NP_459456.1 516766 D 99287 CDS NP_459457.1 16763842 1251981 518531..520312 1 NC_003197.1 multidrud ABC transporter permease/ATP-binding protein 520312 mdlB 1251981 mdlB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrud ABC transporter permease/ATP-binding protein NP_459457.1 518531 D 99287 CDS NP_459458.1 16763843 1251982 520524..520862 1 NC_003197.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.; nitrogen regulatory protein P-II 2 520862 glnK 1251982 glnK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrogen regulatory protein P-II 2 NP_459458.1 520524 D 99287 CDS NP_459459.1 16763844 1251983 520894..522180 1 NC_003197.1 Amt family ammonium transporter 522180 amtB 1251983 amtB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Amt family ammonium transporter NP_459459.1 520894 D 99287 CDS NP_459460.1 16763845 1251984 complement(522280..523140) 1 NC_003197.1 acyl-CoA thioesterase II 523140 tesB 1251984 tesB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acyl-CoA thioesterase II NP_459460.1 522280 R 99287 CDS NP_459461.1 16763846 1251985 523355..523924 1 NC_003197.1 outer membrane lipoprotein 523924 ybaY 1251985 ybaY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_459461.1 523355 D 99287 CDS NP_459462.1 16763847 1251986 complement(523957..524346) 1 NC_003197.1 methyltransferase 524346 ybaZ 1251986 ybaZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methyltransferase NP_459462.1 523957 R 99287 CDS NP_459463.1 16763848 1251988 complement(524577..526127) 1 NC_003197.1 diguanylate cyclase/phosphodiesterase domain 2; diguanylate cyclase/phosphodiesterase domain-containing protein 526127 ylaB 1251988 ylaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diguanylate cyclase/phosphodiesterase domain-containing protein NP_459463.1 524577 R 99287 CDS NP_459464.1 16763849 1251989 526352..526612 1 NC_003197.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 526612 rpmE2 1251989 rpmE2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L31 NP_459464.1 526352 D 99287 CDS NP_459465.1 16763850 1251990 526618..526758 1 NC_003197.1 50S ribosomal protein L36 526758 rpmJ 1251990 rpmJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L36 NP_459465.1 526618 D 99287 CDS NP_459466.1 16763851 1251991 complement(526814..527284) 1 NC_003197.1 inner membrane protein 527284 ylaC 1251991 ylaC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459466.1 526814 R 99287 CDS NP_459467.1 16763852 1251992 complement(527401..527952) 1 NC_003197.1 maltose O-acetyltransferase 527952 maa 1251992 maa Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 maltose O-acetyltransferase NP_459467.1 527401 R 99287 CDS NP_459468.1 16763853 1251993 complement(528131..528349) 1 NC_003197.1 with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein 528349 hha 1251993 hha Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hemolysin expression-modulating protein NP_459468.1 528131 R 99287 CDS NP_459469.1 16763854 1251994 complement(528377..528751) 1 NC_003197.1 cytoplasmic protein 528751 1251994 STM0474 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459469.1 528377 R 99287 CDS NP_459470.1 16763855 1251995 complement(529247..532396) 1 NC_003197.1 RND family acridine efflux pump 532396 acrB 1251995 acrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RND family acridine efflux pump NP_459470.1 529247 R 99287 CDS NP_459471.1 16763856 1251996 complement(532419..533612) 1 NC_003197.1 acridine efflux pump 533612 acrA 1251996 acrA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acridine efflux pump NP_459471.1 532419 R 99287 CDS NP_459472.1 16763857 1251997 533754..534407 1 NC_003197.1 regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; AcrAB operon transcriptional repressor 534407 acrR 1251997 acrR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AcrAB operon transcriptional repressor NP_459472.1 533754 D 99287 CDS NP_459473.1 16763858 1251998 534526..537888 1 NC_003197.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; small-conductance mechanosensitive channel 537888 1251998 STM0478 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 small-conductance mechanosensitive channel NP_459473.1 534526 D 99287 CDS NP_459474.1 16763859 1251999 complement(537930..538865) 1 NC_003197.1 transposase 538865 1251999 STM0479 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transposase NP_459474.1 537930 R 99287 CDS NP_459475.1 16763860 1252000 complement(538935..539102) 1 NC_003197.1 inner membrane protein 539102 ybaM 1252000 ybaM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459475.1 538935 R 99287 CDS NP_459476.1 16763861 1252001 complement(539116..539631) 1 NC_003197.1 PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks; primosomal replication protein N'' 539631 priC 1252001 priC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 primosomal replication protein N'' NP_459476.1 539116 R 99287 CDS NP_459477.1 16763862 1252002 539712..540089 1 NC_003197.1 phage protein 540089 ybaN 1252002 ybaN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage protein NP_459477.1 539712 D 99287 CDS NP_459478.1 16763863 1252003 540242..540793 1 NC_003197.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 540793 apt 1252003 apt Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 adenine phosphoribosyltransferase NP_459478.1 540242 D 99287 CDS NP_459479.1 16763864 1252004 540907..542835 1 NC_003197.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 542835 dnaX 1252004 dnaX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase III subunits gamma and tau NP_459479.1 540907 D 99287 CDS NP_459480.1 16763865 1252005 542881..543210 1 NC_003197.1 nucleoid-associated protein 543210 ybaB 1252005 ybaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleoid-associated protein NP_459480.1 542881 D 99287 CDS NP_459481.1 16763866 1252006 543210..543815 1 NC_003197.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 543815 recR 1252006 recR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 recombination protein RecR NP_459481.1 543210 D 99287 CDS NP_459482.2 39546298 1252007 543926..545800 1 NC_003197.1 heat shock protein 90; chaperone protein HtpG 545800 htpG 1252007 htpG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone protein HtpG NP_459482.2 543926 D 99287 CDS NP_459483.1 16763868 1252008 546041..546685 1 NC_003197.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 546685 adk 1252008 adk Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 adenylate kinase NP_459483.1 546041 D 99287 CDS NP_459484.1 16763869 1252009 546914..547876 1 NC_003197.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 547876 hemH 1252009 hemH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferrochelatase NP_459484.1 546914 D 99287 CDS NP_459485.1 16763870 1252010 complement(547873..548844) 1 NC_003197.1 acetyl esterase 548844 aes 1252010 aes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyl esterase NP_459485.1 547873 R 99287 CDS NP_459486.1 16763871 1252011 548997..550301 1 NC_003197.1 inosine-guanosine kinase 550301 gsk 1252011 gsk Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inosine-guanosine kinase NP_459486.1 548997 D 99287 CDS NP_459487.1 16763872 1252012 complement(550350..552026) 1 NC_003197.1 YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; CPA2 family transport protein 552026 ybaL 1252012 ybaL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 CPA2 family transport protein NP_459487.1 550350 R 99287 CDS NP_459488.1 16763873 1252013 complement(552241..553461) 1 NC_003197.1 MFS family transporter 553461 fsr 1252013 fsr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family transporter NP_459488.1 552241 R 99287 CDS NP_459489.1 16763874 1252014 553634..555286 1 NC_003197.1 cryptic in Salmonella enterica str. LT2 due to the change from a serine to a tyrosine at position 139 which eliminates the 5' nucleosidase activity PMID:11429468; silent protein UshA 555286 ushA 1252014 ushA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 silent protein UshA NP_459489.1 553634 D 99287 CDS NP_459490.1 16763875 1252015 complement(555403..555882) 1 NC_003197.1 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase 555882 ybaK 1252015 ybaK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase NP_459490.1 555403 R 99287 CDS NP_459491.1 16763876 1252016 complement(556084..556878) 1 NC_003197.1 cytoplasmic protein 556878 ybaP 1252016 ybaP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459491.1 556084 R 99287 CDS NP_459492.1 16763877 1252017 complement(556964..557791) 1 NC_003197.1 periplasmic protein 557791 1252017 STM0497 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_459492.1 556964 R 99287 CDS NP_459493.1 16763878 1252018 complement(557945..560446) 1 NC_003197.1 copper-exporting P-type ATPase A 560446 copA 1252018 copA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 copper-exporting P-type ATPase A NP_459493.1 557945 R 99287 CDS NP_459494.1 16763879 1252019 560556..560972 1 NC_003197.1 activator of copper-responsive regulon genes; HTH-type transcriptional regulator CueR 560972 cueR 1252019 cueR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator CueR NP_459494.1 560556 D 99287 CDS NP_459495.1 16763880 1252020 complement(560973..561425) 1 NC_003197.1 implicated in regulation of membrane protease activity; hypothetical protein 561425 1252020 STM0500 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459495.1 560973 R 99287 CDS NP_459496.1 16763881 1252021 complement(561422..562339) 1 NC_003197.1 inner membrane protein 562339 ybbK 1252021 ybbK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459496.1 561422 R 99287 CDS NP_459497.1 16763882 1252022 562486..563163 1 NC_003197.1 ABC transporter ATP-binding protein 563163 ybbL 1252022 ybbL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter ATP-binding protein NP_459497.1 562486 D 99287 CDS NP_459498.1 16763883 1252023 563150..563929 1 NC_003197.1 ABC transporter permease 563929 ybbM 1252023 ybbM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter permease NP_459498.1 563150 D 99287 CDS NP_459499.1 16763884 1252024 complement(564015..564869) 1 NC_003197.1 thioredoxin protein 564869 ybbN 1252024 ybbN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thioredoxin protein NP_459499.1 564015 R 99287 CDS NP_459500.1 16763885 1252025 complement(564929..565699) 1 NC_003197.1 oxidoreductase 565699 ybbO 1252025 ybbO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_459500.1 564929 R 99287 CDS NP_459501.1 16763886 1252026 complement(565854..566468) 1 NC_003197.1 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 566468 tesA 1252026 tesA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 NP_459501.1 565854 R 99287 CDS NP_459502.1 16763887 1252027 566439..567125 1 NC_003197.1 ABC transporter ATP-binding protein 567125 ybbA 1252027 ybbA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter ATP-binding protein NP_459502.1 566439 D 99287 CDS NP_459503.1 16763888 1252028 567122..569536 1 NC_003197.1 inner membrane protein 569536 ybbP 1252028 ybbP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459503.1 567122 D 99287 CDS NP_459504.1 16763889 1252029 569722..570855 1 NC_003197.1 outer membrane protein 570855 1252029 STM0509 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_459504.1 569722 D 99287 CDS NP_459505.1 16763890 1252030 571112..571942 1 NC_003197.1 Maybe involved in iron-transport and virulence in Salmonella enteriditis, PMID:10447888; expression of sfbABC is increased in epithelial cells during infection in Salmonella typhimurium SL1344, PMID:18031307; ABC transporter substrate-binding protein 571942 sfbA 1252030 sfbA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter substrate-binding protein NP_459505.1 571112 D 99287 CDS NP_459506.1 16763891 1252031 571979..572995 1 NC_003197.1 May be involved in virulence, expression of sfbABC is increased in epithelial cells during infection in Salmonella typhimurium SL1344, PMID:18031307; ABC transporter ATPase 572995 sfbB 1252031 sfbB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter ATPase NP_459506.1 571979 D 99287 CDS NP_459507.1 16763892 1252032 572988..573647 1 NC_003197.1 May be involved in virulence; expression of sfbABC is increased in epithelial cells during infection in Salmonella typhimurium SL1344, PMID:18031307; ABC transporter permease 573647 sfbC 1252032 sfbC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter permease NP_459507.1 572988 D 99287 CDS NP_459508.1 16763893 1252033 complement(573686..574780) 1 NC_003197.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 574780 ybbB 1252033 ybbB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA 2-selenouridine synthase NP_459508.1 573686 R 99287 CDS NP_459509.1 16763894 1252034 complement(574850..575776) 1 NC_003197.1 activator of the allDC-ylbA operon involved in allantoin utilization; HTH-type transcriptional activator AllS 575776 ybbS 1252034 ybbS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional activator AllS NP_459509.1 574850 R 99287 CDS NP_459510.1 16763895 1252035 576003..576485 1 NC_003197.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate lyase 576485 allA 1252035 allA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ureidoglycolate lyase NP_459510.1 576003 D 99287 CDS NP_459511.1 16763896 1252036 576564..577382 1 NC_003197.1 regulates operons involved in the utilization of allantoin; HTH-type transcriptional repressor AllR 577382 allR 1252036 allR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional repressor AllR NP_459511.1 576564 D 99287 CDS NP_459512.1 16763897 1252037 577467..579248 1 NC_003197.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 579248 gcl 1252037 gcl Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glyoxylate carboligase NP_459512.1 577467 D 99287 CDS NP_459513.1 16763898 1252038 579261..580037 1 NC_003197.1 hydroxypyruvate isomerase 580037 gip 1252038 gip Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydroxypyruvate isomerase NP_459513.1 579261 D 99287 CDS NP_459514.1 16763899 1252039 580138..581016 1 NC_003197.1 tartronic semialdehyde reductase 581016 glxR 1252039 glxR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tartronic semialdehyde reductase NP_459514.1 580138 D 99287 CDS NP_459515.1 16763900 1252040 581082..582329 1 NC_003197.1 permease 582329 1252040 STM0520 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_459515.1 581082 D 99287 CDS NP_459516.1 16763901 1252041 582405..582659 1 NC_003197.1 cytoplasmic protein 582659 ybbV 1252041 ybbV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459516.1 582405 D 99287 CDS NP_459517.1 16763902 1252042 582566..583879 1 NC_003197.1 allantoin permease 583879 allP 1252042 allP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 allantoin permease NP_459517.1 582566 D 99287 CDS NP_459518.1 16763903 1252043 583958..585319 1 NC_003197.1 Plays a crucial role on both purine and pyrimidine metabolism; allantoinase 585319 allB 1252043 allB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 allantoinase NP_459518.1 583958 D 99287 CDS NP_459519.1 16763904 1252044 585378..586676 1 NC_003197.1 uraxil/xanthine transporter 586676 ybbY 1252044 ybbY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 uraxil/xanthine transporter NP_459519.1 585378 D 99287 CDS NP_459520.1 16763905 1252045 586699..587847 1 NC_003197.1 glycerate kinase 587847 glxK 1252045 glxK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerate kinase NP_459520.1 586699 D 99287 CDS NP_459521.1 16763906 1252046 complement(587927..588712) 1 NC_003197.1 hypothetical protein 588712 1252046 STM0526 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459521.1 587927 R 99287 CDS NP_459522.1 16763907 1252047 complement(588723..589958) 1 NC_003197.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 589958 allC 1252047 allC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 allantoate amidohydrolase NP_459522.1 588723 R 99287 CDS NP_459523.1 16763908 1252048 complement(589980..591029) 1 NC_003197.1 ureidoglycolate dehydrogenase 591029 allD 1252048 allD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ureidoglycolate dehydrogenase NP_459523.1 589980 R 99287 CDS NP_459524.1 16763909 1252049 591360..593024 1 NC_003197.1 multicopy suppressor of dominant negative ftsH mutations; acyl-CoA synthetase 593024 fdrA 1252049 fdrA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acyl-CoA synthetase NP_459524.1 591360 D 99287 CDS NP_459525.1 16763910 1252050 593034..594293 1 NC_003197.1 cytoplasmic protein 594293 1252050 STM0530 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459525.1 593034 D 99287 CDS NP_459526.1 16763911 1252051 594305..595114 1 NC_003197.1 cytoplasmic protein 595114 1252051 STM0531 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459526.1 594305 D 99287 CDS NP_459527.1 16763912 1252052 595118..596011 1 NC_003197.1 forms a homodimer; may be used to synthesize carbomyl phosphate from ATP and carbamate; carbamate kinase 596011 arcC 1252052 arcC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carbamate kinase NP_459527.1 595118 D 99287 CDS NP_459528.1 16763913 1252053 complement(596052..597119) 1 NC_003197.1 catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide; N5-carboxyaminoimidazole ribonucleotide synthase 597119 purK 1252053 purK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N5-carboxyaminoimidazole ribonucleotide synthase NP_459528.1 596052 R 99287 CDS NP_459529.1 16763914 1252054 complement(597116..597625) 1 NC_003197.1 catalyzes the interconversion of N5-carboxyaminoimidazole ribonucleotide and 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate; N5-carboxyaminoimidazole ribonucleotide mutase 597625 purE 1252054 purE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N5-carboxyaminoimidazole ribonucleotide mutase NP_459529.1 597116 R 99287 CDS NP_459530.1 16763915 1252055 complement(597743..598465) 1 NC_003197.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 598465 lpxH 1252055 lpxH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-2,3-diacylglucosamine hydrolase NP_459530.1 597743 R 99287 CDS NP_459531.1 16763916 1252056 complement(598468..598962) 1 NC_003197.1 peptidyl-prolyl cis-trans isomerase 598962 ppiB 1252056 ppiB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidyl-prolyl cis-trans isomerase NP_459531.1 598468 R 99287 CDS NP_459532.1 16763917 1252057 599135..600520 1 NC_003197.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteine--tRNA ligase 600520 cysS 1252057 cysS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cysteine--tRNA ligase NP_459532.1 599135 D 99287 CDS NP_459533.1 16763918 1252058 complement(600564..601388) 1 NC_003197.1 outer membrane protein 601388 1252058 STM0538 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_459533.1 600564 R 99287 CDS NP_459534.1 16763919 1252059 complement(601385..601822) 1 NC_003197.1 inner membrane protein 601822 1252059 STM0539 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459534.1 601385 R 99287 CDS NP_459535.1 16763920 1252060 complement(601815..602360) 1 NC_003197.1 membrane-bound metal-dependent hydrolase 602360 ybcI 1252060 ybcI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane-bound metal-dependent hydrolase NP_459535.1 601815 R 99287 CDS NP_459536.1 16763921 1252061 complement(602488..602700) 1 NC_003197.1 cytoplasmic protein 602700 ybcJ 1252061 ybcJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459536.1 602488 R 99287 CDS NP_459537.1 16763922 1252062 complement(602702..603568) 1 NC_003197.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 603568 folD 1252062 folD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase NP_459537.1 602702 R 99287 CDS NP_459538.3 308065939 1252063 604115..604672 1 NC_003197.1 type-1 fimbrial protein; A chain precursor; type-1A pilin (SW:FM1A_SALTY); major type 1 subunit; type-1 fimbrial protein subunit A 604672 fimA 1252063 fimA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 type-1 fimbrial protein subunit A NP_459538.3 604115 D 99287 CDS NP_459539.1 16763924 1252064 604748..605281 1 NC_003197.1 fimbrin-like protein FimI 605281 fimI 1252064 fimI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrin-like protein FimI NP_459539.1 604748 D 99287 CDS NP_459540.1 16763925 1252065 605325..606017 1 NC_003197.1 chaperone protein FimC 606017 fimC 1252065 fimC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone protein FimC NP_459540.1 605325 D 99287 CDS NP_459541.1 16763926 1252066 606048..608660 1 NC_003197.1 outer membrane usher protein FimD (SW:FIMD_SALTY); outer membrane usher protein FimD 608660 fimD 1252066 fimD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane usher protein FimD NP_459541.1 606048 D 99287 CDS NP_459542.1 16763927 1252067 608675..609682 1 NC_003197.1 in Salmonella typhimurium str. LB5010 FimH is necessary for fimbrial adhesion and involved in the uptake of Salmonella by host cells PMID:9537754, PMID:17379714; In Salmonella typhimurium str.SL1344 this protein is involved in fimbriae assembly PMID:22778099; fimbrial adhesin FimH 609682 fimH 1252067 fimH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial adhesin FimH NP_459542.1 608675 D 99287 CDS NP_459543.1 16763928 1252068 609692..610210 1 NC_003197.1 fimbrial-like protein FimF (SW:FIMF_SALTY); fimbrial-like protein FimF 610210 fimF 1252068 fimF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial-like protein FimF NP_459543.1 609692 D 99287 CDS NP_459544.1 16763929 1252069 complement(610256..610888) 1 NC_003197.1 activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ 610888 fimZ 1252069 fimZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator FimZ NP_459544.1 610256 R 99287 CDS NP_459545.1 16763930 1252070 complement(611492..612214) 1 NC_003197.1 in Salmonella typhimurium strs. LB5010 and SL1344 FimY is involved in the regulation of the fimbrial structural genes PMID:10816478; fimbrial regulatory protein FimY 612214 fimY 1252070 fimY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial regulatory protein FimY NP_459545.1 611492 R 99287 CDS NP_459546.1 16763931 1252071 complement(612233..612544) 1 NC_003197.1 diguanylate cyclase/phosphodiesterase domain 0; diguanylate cyclase/phosphodiesterase domain-containing protein 612544 1252071 STM0551 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diguanylate cyclase/phosphodiesterase domain-containing protein NP_459546.1 612233 R 99287 CDS NP_459547.1 16763932 1252072 complement(612706..613302) 1 NC_003197.1 in Salmonella typhimurium strs. LB5010 and SL1344 FimY is involved in the regulation of the fimbrial structural genes PMID:11133935; fimbrial regulatory protein FimW 613302 fimW 1252072 fimW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial regulatory protein FimW NP_459547.1 612706 R 99287 CDS NP_459548.1 16763933 1252074 complement(613593..613781) 1 NC_003197.1 integrase 613781 1252074 STM0554 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integrase NP_459548.1 613593 R 99287 CDS NP_459550.1 16763935 1252077 complement(614804..616456) 1 NC_003197.1 inner membrane protein 616456 1252077 STM0557 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459550.1 614804 R 99287 CDS NP_459551.1 16763936 1252078 complement(616437..617363) 1 NC_003197.1 glycosyltransferase 617363 yfdH 1252078 yfdH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyltransferase NP_459551.1 616437 R 99287 CDS NP_459552.1 16763937 1252079 complement(617360..617722) 1 NC_003197.1 bactoprenol-linked glucose translocase 617722 rfbI 1252079 rfbI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bactoprenol-linked glucose translocase NP_459552.1 617360 R 99287 CDS NP_459553.1 16763938 1252081 complement(618590..618919) 1 NC_003197.1 sensor histidine kinase 618919 1252081 STM0561 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensor histidine kinase NP_459553.1 618590 R 99287 CDS NP_459555.1 16763940 1252083 complement(619258..620112) 1 NC_003197.1 AraC/XylS family transcriptional regulator 620112 1252083 STM0563 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AraC/XylS family transcriptional regulator NP_459555.1 619258 R 99287 CDS NP_459556.1 16763941 1252084 620328..621653 1 NC_003197.1 oxidoreductase 621653 1252084 STM0564 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_459556.1 620328 D 99287 CDS NP_459557.1 16763942 1252085 621810..622046 1 NC_003197.1 periplasmic protein 622046 1252085 STM0565 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_459557.1 621810 D 99287 CDS NP_459558.1 16763943 1252086 622059..622619 1 NC_003197.1 inner membrane protein 622619 1252086 STM0566 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459558.1 622059 D 99287 CDS NP_459559.1 16763944 1252087 complement(622698..623873) 1 NC_003197.1 DNA repair ATPase 623873 1252087 STM0567 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA repair ATPase NP_459559.1 622698 R 99287 CDS NP_459560.1 16763945 1252088 624199..625593 1 NC_003197.1 APC family phenylalanine transporter 625593 pheP 1252088 pheP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 APC family phenylalanine transporter NP_459560.1 624199 D 99287 CDS NP_459561.1 16763946 1252089 complement(625635..626882) 1 NC_003197.1 mechanosensitive channel protein 626882 ybdG 1252089 ybdG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mechanosensitive channel protein NP_459561.1 625635 R 99287 CDS NP_459562.1 16763947 1252090 627193..629163 1 NC_003197.1 outer membrane esterase; N-acetyl phenylalanine beta-naphthyl esterase; outer membrane N-acetyl phenylalanine beta-naphthyl ester-cleaving esterase 629163 apeE 1252090 apeE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane N-acetyl phenylalanine beta-naphthyl ester-cleaving esterase NP_459562.1 627193 D 99287 CDS NP_459563.1 16763948 1252091 629330..632059 1 NC_003197.1 inner membrane protein 632059 1252091 STM0571 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459563.1 629330 D 99287 CDS NP_459564.1 16763949 1252092 complement(632187..633173) 1 NC_003197.1 phosphosugar isomerase 633173 1252092 STM0572 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphosugar isomerase NP_459564.1 632187 R 99287 CDS NP_459565.1 16763950 1252093 complement(633240..634283) 1 NC_003197.1 inner membrane protein 634283 1252093 STM0573 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459565.1 633240 R 99287 CDS NP_459566.1 16763951 1252094 complement(634316..635170) 1 NC_003197.1 PTS system mannose-specific transporter subunit IID 635170 1252094 STM0574 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannose-specific transporter subunit IID NP_459566.1 634316 R 99287 CDS NP_459567.1 16763952 1252095 complement(635173..635916) 1 NC_003197.1 PTS system mannose-specific transporter subunit IIC 635916 1252095 STM0575 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannose-specific transporter subunit IIC NP_459567.1 635173 R 99287 CDS NP_459568.1 16763953 1252096 complement(635931..636401) 1 NC_003197.1 PTS system mannose-specific transporter subunit IIB 636401 1252096 STM0576 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannose-specific transporter subunit IIB NP_459568.1 635931 R 99287 CDS NP_459569.1 16763954 1252097 complement(636379..636828) 1 NC_003197.1 PTS system mannose-specific transporter subunit IIB 636828 1252097 STM0577 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannose-specific transporter subunit IIB NP_459569.1 636379 R 99287 CDS NP_459570.1 16763955 1252098 complement(637028..637681) 1 NC_003197.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; nitroreductase 637681 nfnB 1252098 nfnB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitroreductase NP_459570.1 637028 R 99287 CDS NP_459571.1 16763956 1252099 complement(637778..638146) 1 NC_003197.1 cytoplasmic protein 638146 ybdF 1252099 ybdF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459571.1 637778 R 99287 CDS NP_459572.1 16763957 1252100 complement(638146..638727) 1 NC_003197.1 regulatory protein 638727 1252100 STM0580 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_459572.1 638146 R 99287 CDS NP_459573.1 16763958 1252101 639016..639357 1 NC_003197.1 resistance against oxidative stress protein A; regulatory protein 639357 1252101 STM0581 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_459573.1 639016 D 99287 CDS NP_459574.1 16763959 1252102 complement(639363..639611) 1 NC_003197.1 inner membrane protein 639611 ybdJ 1252102 ybdJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459574.1 639363 R 99287 CDS NP_459575.1 16763960 1252103 complement(639678..640796) 1 NC_003197.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 640796 ybdK 1252103 ybdK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carboxylate-amine ligase NP_459575.1 639678 R 99287 CDS NP_459576.1 16763961 1252104 complement(640808..641512) 1 NC_003197.1 EntD; phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; 4'-phosphopantetheinyl transferase 641512 entD 1252104 entD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4'-phosphopantetheinyl transferase NP_459576.1 640808 R 99287 CDS NP_459577.1 16763962 1252105 complement(641558..643813) 1 NC_003197.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane porin 643813 fepA 1252105 fepA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane porin NP_459577.1 641558 R 99287 CDS NP_459578.1 16763963 1252106 644002..645216 1 NC_003197.1 enterochelin esterase 645216 fes 1252106 fes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 enterochelin esterase NP_459578.1 644002 D 99287 CDS NP_459579.1 16763964 1252107 645247..645465 1 NC_003197.1 cytoplasmic protein 645465 1252107 STM0587 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459579.1 645247 D 99287 CDS NP_459580.1 16763965 1252108 645462..649346 1 NC_003197.1 with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; enterobactin synthase subunit F 649346 entF 1252108 entF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 enterobactin synthase subunit F NP_459580.1 645462 D 99287 CDS NP_459581.1 16763966 1252109 649596..650732 1 NC_003197.1 part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein 650732 fepE 1252109 fepE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferric enterobactin transport protein NP_459581.1 649596 D 99287 CDS NP_459582.1 16763967 1252110 complement(650785..651579) 1 NC_003197.1 with FepBDE is involved in the transport of ferric enterobactin; ferric-enterobactin ABC transporter ATP-binding protein FepC 651579 fepC 1252110 fepC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferric-enterobactin ABC transporter ATP-binding protein FepC NP_459582.1 650785 R 99287 CDS NP_459583.1 16763968 1252111 complement(651576..652565) 1 NC_003197.1 with FepBCD is involved in the transport of ferric enterobactin; ferric-enterobactin ABC transporter permease FepG 652565 fepG 1252111 fepG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferric-enterobactin ABC transporter permease FepG NP_459583.1 651576 R 99287 CDS NP_459584.1 16763969 1252112 complement(652565..653572) 1 NC_003197.1 with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin ABC transporter permease FepD 653572 fepD 1252112 fepD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 iron-enterobactin ABC transporter permease FepD NP_459584.1 652565 R 99287 CDS NP_459585.1 16763970 1252113 653683..654927 1 NC_003197.1 protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 654927 ybdA 1252113 ybdA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 enterobactin exporter EntS NP_459585.1 653683 D 99287 CDS NP_459586.1 16763971 1252114 complement(654990..655946) 1 NC_003197.1 with FepCDG is involved in the transport of ferric enterobactin; ferric-enterobactin ABC transporter substrate-binding protein FepB 655946 fepB 1252114 fepB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferric-enterobactin ABC transporter substrate-binding protein FepB NP_459586.1 654990 R 99287 CDS NP_459587.1 16763972 1252115 656255..657430 1 NC_003197.1 synthesizes isochorismate acid from chorismate; isochorismate synthase 657430 entC 1252115 entC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 isochorismate synthase NP_459587.1 656255 D 99287 CDS NP_459588.1 16763973 1252116 657440..659050 1 NC_003197.1 enterobactin synthase subunit E; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase 659050 entE 1252116 entE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase NP_459588.1 657440 D 99287 CDS NP_459589.1 16763974 1252117 659064..659921 1 NC_003197.1 2,3-dihydro-2,3-dihydroxybenzoate synthetase 659921 entB 1252117 entB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2,3-dihydro-2,3-dihydroxybenzoate synthetase NP_459589.1 659064 D 99287 CDS NP_459590.1 16763975 1252118 659921..660676 1 NC_003197.1 catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase 660676 entA 1252118 entA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2,3-dihydroxybenzoate-2,3-dehydrogenase NP_459590.1 659921 D 99287 CDS NP_459591.1 16763976 1252119 660679..661092 1 NC_003197.1 prevents misacylation of EntB in enterobactin synthesis; proofreading thioesterase EntH 661092 ybdB 1252119 ybdB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 proofreading thioesterase EntH NP_459591.1 660679 D 99287 CDS NP_459592.1 16763977 1252120 661274..663379 1 NC_003197.1 carbon starvation protein 663379 cstA 1252120 cstA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carbon starvation protein NP_459592.1 661274 D 99287 CDS NP_459593.1 16763978 1252121 663443..663640 1 NC_003197.1 cytoplasmic protein 663640 ybdD 1252121 ybdD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459593.1 663443 D 99287 CDS NP_459594.1 16763979 1252122 complement(663676..664764) 1 NC_003197.1 member of the iron-containing alcohol dehydrogenase family; unknown function; oxidoreductase 664764 ybdH 1252122 ybdH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_459594.1 663676 R 99287 CDS NP_459595.1 16763980 1252123 664891..666051 1 NC_003197.1 catalyzes the transfer of an amino moiety; aminotransferase 666051 ybdL 1252123 ybdL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aminotransferase NP_459595.1 664891 D 99287 CDS NP_459596.1 16763981 1252124 complement(666052..666669) 1 NC_003197.1 transcriptional regulator 666669 ybdM 1252124 ybdM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_459596.1 666052 R 99287 CDS NP_459597.1 16763982 1252125 complement(666642..667877) 1 NC_003197.1 PAPS reductase/FAD synthetase; 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase 667877 ybdN 1252125 ybdN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase NP_459597.1 666642 R 99287 CDS NP_459598.1 16763983 1252126 complement(668043..668945) 1 NC_003197.1 LysR family transcriptional regulator 668945 ybdO 1252126 ybdO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_459598.1 668043 R 99287 CDS NP_459599.1 16763984 1252127 complement(669262..670008) 1 NC_003197.1 Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 670008 dsbG 1252127 dsbG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 disulfide isomerase/thiol-disulfide oxidase NP_459599.1 669262 R 99287 CDS NP_459600.1 16763985 1252128 670449..671012 1 NC_003197.1 with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase subunit C 671012 ahpC 1252128 ahpC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alkyl hydroperoxide reductase subunit C NP_459600.1 670449 D 99287 CDS NP_459601.1 16763986 1252129 671254..672819 1 NC_003197.1 alkyl hydroperoxide reductase F52a subunit; detoxification of hydroperoxides; alkyl hydroperoxide reductase subunit F 672819 ahpF 1252129 ahpF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alkyl hydroperoxide reductase subunit F NP_459601.1 671254 D 99287 CDS NP_459602.1 16763987 1252130 673151..673711 1 NC_003197.1 anaerobic dehydrogenase component 673711 1252130 STM0610 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic dehydrogenase component NP_459602.1 673151 D 99287 CDS NP_459603.1 16763988 1252131 673704..675983 1 NC_003197.1 oxidoreductase subunit 675983 1252131 STM0611 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase subunit NP_459603.1 673704 D 99287 CDS NP_459604.1 16763989 1252132 675980..676537 1 NC_003197.1 hydrogenase subunit 676537 1252132 STM0612 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase subunit NP_459604.1 675980 D 99287 CDS NP_459605.1 16763990 1252133 676537..677304 1 NC_003197.1 hydrogenase subunit 677304 1252133 STM0613 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase subunit NP_459605.1 676537 D 99287 CDS NP_459606.1 16763991 1252134 complement(677372..677800) 1 NC_003197.1 universal stress protein G 677800 uspG 1252134 uspG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 universal stress protein G NP_459606.1 677372 R 99287 CDS NP_459607.1 16763992 1252135 678023..679261 1 NC_003197.1 dehydrogenase 679261 ybdR 1252135 ybdR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dehydrogenase NP_459607.1 678023 D 99287 CDS NP_459608.1 16763993 1252136 complement(679344..679754) 1 NC_003197.1 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator 679754 rnk 1252136 rnk Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleoside diphosphate kinase regulator NP_459608.1 679344 R 99287 CDS NP_459609.1 16763994 1252137 complement(679989..680795) 1 NC_003197.1 cleaves phosphodiester bond between any two nucleotides; RNase I 680795 rna 1252137 rna Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNase I NP_459609.1 679989 R 99287 CDS NP_459610.1 16763995 1252138 complement(680905..682368) 1 NC_003197.1 citrate/succinate transporter 682368 citT 1252138 citT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 citrate/succinate transporter NP_459610.1 680905 R 99287 CDS NP_459611.1 16763996 1252139 complement(682406..683302) 1 NC_003197.1 catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase 683302 citG 1252139 citG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase NP_459611.1 682406 R 99287 CDS NP_459612.1 16763997 1252140 complement(683274..683825) 1 NC_003197.1 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 683825 citX 1252140 citX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase NP_459612.1 683274 R 99287 CDS NP_459613.1 16763998 1252141 complement(683829..685358) 1 NC_003197.1 citrate lyase subunit alpha/citrate-ACP transferase 685358 citF 1252141 citF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 citrate lyase subunit alpha/citrate-ACP transferase NP_459613.1 683829 R 99287 CDS NP_459614.1 16763999 1252142 complement(685368..686276) 1 NC_003197.1 citrate lyase subunit beta 686276 citE 1252142 citE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 citrate lyase subunit beta NP_459614.1 685368 R 99287 CDS NP_459615.1 16764000 1252143 complement(686273..686569) 1 NC_003197.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 686569 citD 1252143 citD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 citrate lyase subunit gamma NP_459615.1 686273 R 99287 CDS NP_459616.1 16764001 1252144 complement(686566..687642) 1 NC_003197.1 citrate lyase synthetase 687642 citC 1252144 citC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 citrate lyase synthetase NP_459616.1 686566 R 99287 CDS NP_459617.1 16764002 1252145 688027..689688 1 NC_003197.1 sensory histidine kinase 689688 dpiB 1252145 dpiB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensory histidine kinase NP_459617.1 688027 D 99287 CDS NP_459618.1 16764003 1252146 689657..690337 1 NC_003197.1 regulates the expression of citAB in citrate fermentation; two-component response regulator DpiA 690337 dpiA 1252146 dpiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 two-component response regulator DpiA NP_459618.1 689657 D 99287 CDS NP_459619.1 16764004 1252147 complement(690391..691776) 1 NC_003197.1 responsible for the transport of C4-dicarboxylates during anaerobic growth; DcuC family dicarboxylate transporter 691776 dcuC 1252147 dcuC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DcuC family dicarboxylate transporter NP_459619.1 690391 R 99287 CDS NP_459620.1 16764005 1252148 692155..692727 1 NC_003197.1 catalyzes the transfer of palmitate to lipid A; lipid A palmitoyltransferase PagP 692727 pagP 1252148 pagP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipid A palmitoyltransferase PagP NP_459620.1 692155 D 99287 CDS NP_459621.1 16764006 1252149 692915..693124 1 NC_003197.1 member of the CspA family; negative regulator of cspA transcription; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; RNA chaperone 693124 cspE 1252149 cspE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNA chaperone NP_459621.1 692915 D 99287 CDS NP_459622.1 16764007 1252150 complement(693182..693565) 1 NC_003197.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; fluoride ion transporter 693565 ccrB 1252150 ccrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fluoride ion transporter NP_459622.1 693182 R 99287 CDS NP_459623.1 16764008 1252151 693656..694444 1 NC_003197.1 hydrolase 694444 ybeM 1252151 ybeM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrolase NP_459623.1 693656 D 99287 CDS NP_459624.1 16764009 1252152 694573..694776 1 NC_003197.1 TatE part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; Sec-independent protein translocase protein TatE 694776 tatE 1252152 tatE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Sec-independent protein translocase protein TatE NP_459624.1 694573 D 99287 CDS NP_459625.1 16764010 1252153 complement(694862..695827) 1 NC_003197.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 695827 lipA 1252153 lipA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoyl synthase NP_459625.1 694862 R 99287 CDS NP_459626.1 16764011 1252154 complement(696033..696986) 1 NC_003197.1 LysR family transcriptional regulator 696986 ybeF 1252154 ybeF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_459626.1 696033 R 99287 CDS NP_459627.2 39546300 1252155 complement(697288..697929) 1 NC_003197.1 lipoate-protein ligase B; lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; octanoyltransferase 697929 lipB 1252155 lipB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 octanoyltransferase NP_459627.2 697288 R 99287 CDS NP_459628.1 16764013 1252156 complement(698029..698292) 1 NC_003197.1 hypothetical protein 698292 1252156 STM0636 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459628.1 698029 R 99287 CDS NP_459629.1 16764014 1252157 complement(698401..699612) 1 NC_003197.1 penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase 699612 dacA 1252157 dacA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-alanyl-D-alanine carboxypeptidase NP_459629.1 698401 R 99287 CDS NP_459630.1 16764015 1252158 complement(699752..700897) 1 NC_003197.1 rare lipoprotein A 700897 rlpA 1252158 rlpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rare lipoprotein A NP_459630.1 699752 R 99287 CDS NP_459631.1 16764016 1252159 complement(700908..702020) 1 NC_003197.1 rod shape-determining membrane protein 702020 mrdB 1252159 mrdB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rod shape-determining membrane protein NP_459631.1 700908 R 99287 CDS NP_459632.1 16764017 1252160 complement(702023..703924) 1 NC_003197.1 cell elongation specific transpeptidase 703924 mrdA 1252160 mrdA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell elongation specific transpeptidase NP_459632.1 702023 R 99287 CDS NP_459633.1 16764018 1252161 complement(703955..704422) 1 NC_003197.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase H 704422 ybeA 1252161 ybeA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA large subunit methyltransferase H NP_459633.1 703955 R 99287 CDS NP_459634.1 16764019 1252162 complement(704426..704743) 1 NC_003197.1 ribosomal silencing factor RsfS 704743 ybeB 1252162 ybeB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribosomal silencing factor RsfS NP_459634.1 704426 R 99287 CDS NP_459635.1 16764020 1252163 complement(705072..705680) 1 NC_003197.1 alpha-ribazole-5'-phosphate phosphatase (SW:COBC_SALTY); cobalamin synthesis; alpha ribazole-5'-P phosphatase 705680 cobC 1252163 cobC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alpha ribazole-5'-P phosphatase NP_459635.1 705072 R 99287 CDS NP_459636.1 16764021 1252164 705777..706871 1 NC_003197.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 706871 cobD 1252164 cobD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 threonine-phosphate decarboxylase NP_459636.1 705777 D 99287 CDS NP_459637.1 16764022 1252165 complement(706846..707487) 1 NC_003197.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinate-nucleotide adenylyltransferase 707487 nadD 1252165 nadD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nicotinate-nucleotide adenylyltransferase NP_459637.1 706846 R 99287 CDS NP_459638.1 16764023 1252166 complement(707489..708520) 1 NC_003197.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 708520 holA 1252166 holA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase III subunit delta NP_459638.1 707489 R 99287 CDS NP_459639.1 16764024 1252167 complement(708520..709110) 1 NC_003197.1 rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein LptE 709110 lptE 1252167 lptE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LPS-assembly lipoprotein LptE NP_459639.1 708520 R 99287 CDS NP_459640.1 16764025 1252168 complement(709125..711707) 1 NC_003197.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucine--tRNA ligase 711707 leuS 1252168 leuS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 leucine--tRNA ligase NP_459640.1 709125 R 99287 CDS NP_459643.1 16764028 1252171 713524..714477 1 NC_003197.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 714477 1252171 STM0651 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-keto-3-deoxygluconate permease NP_459643.1 713524 D 99287 CDS NP_459644.1 16764029 1252172 714545..716473 1 NC_003197.1 sigma-54 dependent transcriptional regulator 716473 1252172 STM0652 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sigma-54 dependent transcriptional regulator NP_459644.1 714545 D 99287 CDS NP_459645.1 16764030 1252173 716566..717039 1 NC_003197.1 cytoplasmic protein 717039 ybeL 1252173 ybeL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459645.1 716566 D 99287 CDS NP_459646.1 16764031 1252174 complement(717078..718073) 1 NC_003197.1 TPR repeat; hypothetical protein 718073 1252174 STM0654 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459646.1 717078 R 99287 CDS NP_459647.1 16764032 1252175 718198..718905 1 NC_003197.1 cytoplasmic protein 718905 ybeR 1252175 ybeR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459647.1 718198 D 99287 CDS NP_459648.1 16764033 1252176 718902..720335 1 NC_003197.1 DnaJ family molecular chaperone 720335 ybeS 1252176 ybeS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DnaJ family molecular chaperone NP_459648.1 718902 D 99287 CDS NP_459649.1 16764034 1252177 720347..721042 1 NC_003197.1 cytoplasmic protein 721042 ybeU 1252177 ybeU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459649.1 720347 D 99287 CDS NP_459650.1 16764035 1252178 721039..722511 1 NC_003197.1 DnaJ family; DnaJ family molecular chaperone 722511 ybeV 1252178 ybeV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DnaJ family molecular chaperone NP_459650.1 721039 D 99287 CDS NP_459651.1 16764036 1252179 complement(722533..724212) 1 NC_003197.1 heatshock protein 724212 hscC 1252179 hscC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 heatshock protein NP_459651.1 722533 R 99287 CDS NP_459652.1 16764037 1252180 complement(724288..725526) 1 NC_003197.1 cytoplasmic protein 725526 1252180 STM0660 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459652.1 724288 R 99287 CDS NP_459653.1 16764038 1252181 complement(725558..726493) 1 NC_003197.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; pyrimidine-specific ribonucleoside hydrolase RihA 726493 rihA 1252181 rihA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyrimidine-specific ribonucleoside hydrolase RihA NP_459653.1 725558 R 99287 CDS NP_459654.1 16764039 1252182 complement(726610..727335) 1 NC_003197.1 glutamate/aspartate ABC transporter ATP-binding protein 727335 gltL 1252182 gltL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamate/aspartate ABC transporter ATP-binding protein NP_459654.1 726610 R 99287 CDS NP_459655.1 16764040 1252183 complement(727335..728009) 1 NC_003197.1 glutamate/aspartate ABC transporter permease 728009 gltK 1252183 gltK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamate/aspartate ABC transporter permease NP_459655.1 727335 R 99287 CDS NP_459656.1 16764041 1252184 complement(728009..728749) 1 NC_003197.1 glutamate/aspartate ABC transporter permease 728749 gltJ 1252184 gltJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamate/aspartate ABC transporter permease NP_459656.1 728009 R 99287 CDS NP_459657.1 16764042 1252185 complement(728909..729835) 1 NC_003197.1 glutamate/aspartate ABC transporter substrate-binding protein 729835 gltI 1252185 gltI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamate/aspartate ABC transporter substrate-binding protein NP_459657.1 728909 R 99287 CDS NP_459658.1 16764043 1252186 complement(730172..731710) 1 NC_003197.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 731710 lnt 1252186 lnt Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 apolipoprotein N-acyltransferase NP_459658.1 730172 R 99287 CDS NP_459659.1 16764044 1252187 complement(731730..732608) 1 NC_003197.1 magnesium/cobalt efflux protein CorC 732608 corC 1252187 corC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 magnesium/cobalt efflux protein CorC NP_459659.1 731730 R 99287 CDS NP_459660.1 16764045 1252188 complement(732766..733239) 1 NC_003197.1 endoribonuclease 733239 ybeY 1252188 ybeY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 endoribonuclease NP_459660.1 732766 R 99287 CDS NP_459661.2 308065969 1252189 complement(733236..734282) 1 NC_003197.1 phosphate starvation-inducible protein 734282 phoL 1252189 phoL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphate starvation-inducible protein NP_459661.2 733236 R 99287 CDS NP_459662.1 16764047 1252190 complement(734487..735911) 1 NC_003197.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 735911 miaB 1252190 miaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (dimethylallyl)adenosine tRNA methylthiotransferase NP_459662.1 734487 R 99287 CDS NP_459663.1 16764048 1252191 736055..737230 1 NC_003197.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 737230 ubiF 1252191 ubiF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase NP_459663.1 736055 D 99287 CDS NP_459664.1 16764049 1252192 complement(737297..737872) 1 NC_003197.1 inner membrane protein 737872 1252192 STM0672 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459664.1 737297 R 99287 CDS NP_459665.1 16764050 1252200 complement(738939..740603) 1 NC_003197.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase 740603 asnB 1252200 asnB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 asparagine synthetase NP_459665.1 738939 R 99287 CDS NP_459666.1 16764051 1252201 complement(740893..741645) 1 NC_003197.1 UMP phosphatase 741645 nagD 1252201 nagD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UMP phosphatase NP_459666.1 740893 R 99287 CDS NP_459667.1 16764052 1252202 complement(741692..742912) 1 NC_003197.1 N-acetylglucosamine operon transcriptional repressor 742912 nagC 1252202 nagC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-acetylglucosamine operon transcriptional repressor NP_459667.1 741692 R 99287 CDS NP_459668.1 16764053 1252203 complement(742917..744071) 1 NC_003197.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase 744071 nagA 1252203 nagA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-acetylglucosamine-6-phosphate deacetylase NP_459668.1 742917 R 99287 CDS NP_459669.1 16764054 1252204 complement(744131..744931) 1 NC_003197.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 744931 nagB 1252204 nagB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucosamine-6-phosphate deaminase NP_459669.1 744131 R 99287 CDS NP_459670.1 16764055 1252205 745258..747210 1 NC_003197.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system N-acetyl glucosamine specific transporter subunit IIABC 747210 nagE 1252205 nagE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system N-acetyl glucosamine specific transporter subunit IIABC NP_459670.1 745258 D 99287 CDS NP_459671.1 16764056 1252206 747421..749088 1 NC_003197.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutamine--tRNA ligase 749088 glnS 1252206 glnS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamine--tRNA ligase NP_459671.1 747421 D 99287 CDS NP_459672.1 16764057 1252207 749534..750940 1 NC_003197.1 required for uptake of chitin-derived oligosaccharides; chitoporin 750940 ybfM 1252207 ybfM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chitoporin NP_459672.1 749534 D 99287 CDS NP_459673.1 16764058 1252208 750990..751322 1 NC_003197.1 lipoprotein 751322 ybfN 1252208 ybfN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein NP_459673.1 750990 D 99287 CDS NP_459674.1 16764059 1252209 complement(751371..752675) 1 NC_003197.1 is involved in the uptake of citrate and the transport of protons into the cell; also involved in the transport of tricarballylate; citrate/tricarballylate transportrer 752675 1252209 STM0689 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 citrate/tricarballylate transportrer NP_459674.1 751371 R 99287 CDS NP_459675.1 16764060 1252210 complement(752726..753865) 1 NC_003197.1 with CitA (TcuA) catalyzes the oxidation of tricarballylate to cis-aconitate; originally thought to be involved in citrate utilization; tricarballylate utilization protein B 753865 tcuB 1252210 tcuB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tricarballylate utilization protein B NP_459675.1 752726 R 99287 CDS NP_459676.1 16764061 1252211 complement(753852..755255) 1 NC_003197.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 755255 1252211 STM0691 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tricarballylate dehydrogenase NP_459676.1 753852 R 99287 CDS NP_459677.1 16764062 1252212 complement(755353..756279) 1 NC_003197.1 LysR family transcriptional regulator 756279 1252212 STM0692 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_459677.1 755353 R 99287 CDS NP_459678.1 16764063 1252213 complement(756394..756846) 1 NC_003197.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 756846 fur 1252213 fur Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferric uptake regulator NP_459678.1 756394 R 99287 CDS NP_459679.1 16764064 1252214 complement(757128..757658) 1 NC_003197.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 757658 fldA 1252214 fldA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flavodoxin NP_459679.1 757128 R 99287 CDS NP_459680.1 16764065 1252215 complement(757809..758102) 1 NC_003197.1 LexA-regulated; LexA regulated protein 758102 ybfE 1252215 ybfE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LexA regulated protein NP_459680.1 757809 R 99287 CDS NP_459681.1 16764066 1252216 complement(758236..759006) 1 NC_003197.1 hypothetical protein 759006 1252216 STM0696 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459681.1 758236 R 99287 CDS NP_459682.1 16764067 1252217 759191..759733 1 NC_003197.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 759733 seqA 1252217 seqA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 replication initiation regulator SeqA NP_459682.1 759191 D 99287 CDS NP_459683.1 16764068 1252218 759758..761398 1 NC_003197.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 761398 pgm 1252218 pgm Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoglucomutase NP_459683.1 759758 D 99287 CDS NP_459684.1 16764069 1252219 complement(761513..761998) 1 NC_003197.1 cytoplasmic protein 761998 1252219 STM0699 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459684.1 761513 R 99287 CDS NP_459685.1 16764070 1252220 complement(762063..763382) 1 NC_003197.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; APC family putrescine/ornithine antiporter 763382 potE 1252220 potE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 APC family putrescine/ornithine antiporter NP_459685.1 762063 R 99287 CDS NP_459686.1 16764071 1252221 complement(763379..765577) 1 NC_003197.1 ornithine decarboxylase 765577 speF 1252221 speF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ornithine decarboxylase NP_459686.1 763379 R 99287 CDS NP_459687.1 16764072 1252222 complement(766339..767016) 1 NC_003197.1 response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; response regulator KdpE 767016 kdpE 1252222 kdpE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 response regulator KdpE NP_459687.1 766339 R 99287 CDS NP_459688.1 16764073 1252223 complement(767013..769697) 1 NC_003197.1 sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor histidine kinase KdpD 769697 kdpD 1252223 kdpD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensor histidine kinase KdpD NP_459688.1 767013 R 99287 CDS NP_459689.1 16764074 1252224 complement(769694..770278) 1 NC_003197.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 770278 kdpC 1252224 kdpC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 potassium-transporting ATPase subunit C NP_459689.1 769694 R 99287 CDS NP_459690.1 16764075 1252225 complement(770287..772335) 1 NC_003197.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 772335 kdpB 1252225 kdpB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 potassium-transporting ATPase subunit B NP_459690.1 770287 R 99287 CDS NP_459691.1 16764076 1252226 complement(772356..774035) 1 NC_003197.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 774035 kdpA 1252226 kdpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 potassium-transporting ATPase subunit A NP_459691.1 772356 R 99287 CDS NP_459692.1 16764077 1252227 complement(774035..774124) 1 NC_003197.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit F 774124 kdpF 1252227 kdpF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 potassium-transporting ATPase subunit F NP_459692.1 774035 R 99287 CDS NP_459693.1 16764078 1252228 774461..774667 1 NC_003197.1 periplasmic protein 774667 ybfA 1252228 ybfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_459693.1 774461 D 99287 CDS NP_459694.1 16764079 1252229 774778..776199 1 NC_003197.1 UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 776199 phrB 1252229 phrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 deoxyribodipyrimidine photolyase NP_459694.1 774778 D 99287 CDS NP_459695.1 16764080 1252230 complement(776238..777719) 1 NC_003197.1 dipeptide permease D 777719 1252230 STM0710 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dipeptide permease D NP_459695.1 776238 R 99287 CDS NP_459696.1 16764081 1252231 778048..778791 1 NC_003197.1 GTP cyclohydrolase 778791 ybgI 1252231 ybgI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GTP cyclohydrolase NP_459696.1 778048 D 99287 CDS NP_459697.1 16764082 1252232 778807..779463 1 NC_003197.1 carboxylase 779463 ybgJ 1252232 ybgJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carboxylase NP_459697.1 778807 D 99287 CDS NP_459698.1 16764083 1252233 779457..780389 1 NC_003197.1 carboxylase 780389 ybgK 1252233 ybgK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carboxylase NP_459698.1 779457 D 99287 CDS NP_459699.1 16764084 1252234 780379..781113 1 NC_003197.1 hypothetical protein 781113 1252234 STM0714 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459699.1 780379 D 99287 CDS NP_459700.1 16764085 1252235 781437..781568 1 NC_003197.1 cytoplasmic protein 781568 1252235 STM0715 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459700.1 781437 D 99287 CDS NP_459701.1 16764086 1252236 781628..782194 1 NC_003197.1 phage integrase 782194 1252236 STM0716 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage integrase NP_459701.1 781628 D 99287 CDS NP_459702.1 16764087 1252237 782654..782989 1 NC_003197.1 inner membrane protein 782989 1252237 STM0717 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459702.1 782654 D 99287 CDS NP_459703.1 16764088 1252238 782991..783731 1 NC_003197.1 cytoplasmic protein 783731 1252238 STM0718 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459703.1 782991 D 99287 CDS NP_459704.1 16764089 1252239 784017..785168 1 NC_003197.1 UDP-galactopyranose mutase 785168 1252239 STM0719 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-galactopyranose mutase NP_459704.1 784017 D 99287 CDS NP_459705.1 16764090 1252240 785165..786061 1 NC_003197.1 glycosyl transferase 786061 1252240 STM0720 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyl transferase NP_459705.1 785165 D 99287 CDS NP_459706.1 16764091 1252241 786074..787207 1 NC_003197.1 glycosyl transferase 787207 1252241 STM0721 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyl transferase NP_459706.1 786074 D 99287 CDS NP_459707.1 16764092 1252242 787336..788106 1 NC_003197.1 ABC transporter permease 788106 1252242 STM0722 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter permease NP_459707.1 787336 D 99287 CDS NP_459708.1 16764093 1252243 788110..788820 1 NC_003197.1 polysaccharide/polyol phosphate ABC transporter ATPase 788820 1252243 STM0723 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 polysaccharide/polyol phosphate ABC transporter ATPase NP_459708.1 788110 D 99287 CDS NP_459709.1 16764094 1252244 788914..790692 1 NC_003197.1 cell wall biogenesis; glycosyltransferase 790692 1252244 STM0724 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyltransferase NP_459709.1 788914 D 99287 CDS NP_459710.1 16764095 1252245 790885..791718 1 NC_003197.1 cell wall biogenesis; glycosyltransferase 791718 1252245 STM0725 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyltransferase NP_459710.1 790885 D 99287 CDS NP_459711.1 16764096 1252246 791776..793671 1 NC_003197.1 glycosyl transferase 793671 1252246 STM0726 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyl transferase NP_459711.1 791776 D 99287 CDS NP_459712.1 16764097 1252247 793739..793876 1 NC_003197.1 cytoplasmic protein 793876 1252247 STM0727 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459712.1 793739 D 99287 CDS NP_459713.1 16764098 1252248 793925..794716 1 NC_003197.1 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; endonuclease VIII 794716 nei 1252248 nei Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 endonuclease VIII NP_459713.1 793925 D 99287 CDS NP_459714.1 16764099 1252249 complement(794771..795817) 1 NC_003197.1 transporter 795817 abrB 1252249 abrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transporter NP_459714.1 794771 R 99287 CDS NP_459715.1 16764100 1252250 complement(795954..797237) 1 NC_003197.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; citrate synthase 797237 gltA 1252250 gltA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 citrate synthase NP_459715.1 795954 R 99287 CDS NP_459716.1 16764101 1252251 797197..797583 1 NC_003197.1 inner membrane protein 797583 1252251 STM0731 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459716.1 797197 D 99287 CDS NP_459717.1 16764102 1252252 797992..798381 1 NC_003197.1 succinate dehydrogenase cytochrome b556 subunit 798381 sdhC 1252252 sdhC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 succinate dehydrogenase cytochrome b556 subunit NP_459717.1 797992 D 99287 CDS NP_459718.1 16764103 1252253 798375..798722 1 NC_003197.1 succinate dehydrogenase cytochrome b556 small membrane subunit 798722 sdhD 1252253 sdhD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 succinate dehydrogenase cytochrome b556 small membrane subunit NP_459718.1 798375 D 99287 CDS NP_459719.1 16764104 1252254 798722..800488 1 NC_003197.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 800488 sdhA 1252254 sdhA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 succinate dehydrogenase flavoprotein subunit NP_459719.1 798722 D 99287 CDS NP_459720.1 16764105 1252255 800502..801221 1 NC_003197.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 801221 sdhB 1252255 sdhB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 succinate dehydrogenase iron-sulfur subunit NP_459720.1 800502 D 99287 CDS NP_459721.1 16764106 1252256 801745..804546 1 NC_003197.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase decarboxylase subunit E1 804546 sucA 1252256 sucA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-oxoglutarate dehydrogenase decarboxylase subunit E1 NP_459721.1 801745 D 99287 CDS NP_459722.1 16764107 1252257 804561..805769 1 NC_003197.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; 2-oxoglutarate dehydrogenase dihydrolipoyltranssuccinase subunit E2 805769 sucB 1252257 sucB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-oxoglutarate dehydrogenase dihydrolipoyltranssuccinase subunit E2 NP_459722.1 804561 D 99287 CDS NP_459723.1 16764108 1252258 805911..807077 1 NC_003197.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA ligase subunit beta 807077 sucC 1252258 sucC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 succinyl-CoA ligase subunit beta NP_459723.1 805911 D 99287 CDS NP_459724.1 16764109 1252259 807077..807946 1 NC_003197.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA ligase subunit alpha 807946 sucD 1252259 sucD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 succinyl-CoA ligase subunit alpha NP_459724.1 807077 D 99287 CDS NP_459725.1 16764110 1252260 809529..811097 1 NC_003197.1 cytochrome d terminal oxidase polypeptide subunit I 811097 cydA 1252260 cydA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome d terminal oxidase polypeptide subunit I NP_459725.1 809529 D 99287 CDS NP_459726.1 16764111 1252261 811113..812252 1 NC_003197.1 cytochrome d terminal oxidase polypeptide subunit II 812252 cydB 1252261 cydB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome d terminal oxidase polypeptide subunit II NP_459726.1 811113 D 99287 CDS NP_459727.1 16764112 1252262 812267..812380 1 NC_003197.1 outer membrane lipoprotein 812380 ybgT 1252262 ybgT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_459727.1 812267 D 99287 CDS NP_459728.1 16764113 1252263 812517..812798 1 NC_003197.1 inner membrane protein 812798 ybgE 1252263 ybgE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459728.1 812517 D 99287 CDS NP_459729.1 16764114 1252264 813027..813431 1 NC_003197.1 catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase 813431 ybgC 1252264 ybgC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acyl-CoA thioester hydrolase NP_459729.1 813027 D 99287 CDS NP_459730.1 16764115 1252265 813428..814120 1 NC_003197.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 814120 tolQ 1252265 tolQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 colicin uptake protein TolQ NP_459730.1 813428 D 99287 CDS NP_459731.1 16764116 1252266 814124..814552 1 NC_003197.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 814552 tolR 1252266 tolR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 colicin uptake protein TolR NP_459731.1 814124 D 99287 CDS NP_459732.1 16764117 1252267 814617..815840 1 NC_003197.1 inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA 815840 tolA 1252267 tolA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell envelope integrity inner membrane protein TolA NP_459732.1 814617 D 99287 CDS NP_459733.1 16764118 1252268 815964..817256 1 NC_003197.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 817256 tolB 1252268 tolB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 translocation protein TolB NP_459733.1 815964 D 99287 CDS NP_459734.1 16764119 1252269 817291..817815 1 NC_003197.1 peptidoglycan-associated outer membrane lipoprotein 817815 pal 1252269 pal Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidoglycan-associated outer membrane lipoprotein NP_459734.1 817291 D 99287 CDS NP_459735.1 16764120 1252270 817825..818613 1 NC_003197.1 periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; periplasmic TolA-binding protein 818613 ybgF 1252270 ybgF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic TolA-binding protein NP_459735.1 817825 D 99287 CDS NP_459736.1 16764121 1252276 820233..821276 1 NC_003197.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 821276 nadA 1252276 nadA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 quinolinate synthetase NP_459736.1 820233 D 99287 CDS NP_459737.1 16764122 1252277 821301..822020 1 NC_003197.1 PNUC protein (SW:PNUC_SALTY); NMN family; nicotinamide riboside transporter PnuC 822020 pnuC 1252277 pnuC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nicotinamide riboside transporter PnuC NP_459737.1 821301 D 99287 CDS NP_459738.1 16764123 1252278 complement(822017..822955) 1 NC_003197.1 involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB 822955 ybgR 1252278 ybgR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 zinc transporter ZitB NP_459738.1 822017 R 99287 CDS NP_459739.1 16764124 1252279 complement(823066..823452) 1 NC_003197.1 hypothetical protein 823452 1252279 STM0759 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459739.1 823066 R 99287 CDS NP_459740.1 16764125 1252280 823772..824824 1 NC_003197.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 824824 aroG 1252280 aroG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phospho-2-dehydro-3-deoxyheptonate aldolase NP_459740.1 823772 D 99287 CDS NP_459741.1 16764126 1252281 complement(824918..825463) 1 NC_003197.1 fumarate hydratase subunit beta 825463 1252281 STM0761 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fumarate hydratase subunit beta NP_459741.1 824918 R 99287 CDS NP_459742.1 16764127 1252282 complement(825478..826323) 1 NC_003197.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase subunit alpha 826323 1252282 STM0762 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fumarate hydratase subunit alpha NP_459742.1 825478 R 99287 CDS NP_459743.2 39546302 1252283 826453..827343 1 NC_003197.1 LysR family transcriptional regulator 827343 1252283 STM0763.s Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_459743.2 826453 D 99287 CDS NP_459744.1 16764129 1252284 complement(827344..828327) 1 NC_003197.1 LysR family transcriptional regulator 828327 1252284 STM0764 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_459744.1 827344 R 99287 CDS NP_459745.1 16764130 1252285 828571..829818 1 NC_003197.1 cation transporter 829818 1252285 STM0765 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cation transporter NP_459745.1 828571 D 99287 CDS NP_459746.1 16764131 1252286 829868..830113 1 NC_003197.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 830113 dcoC 1252286 dcoC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxaloacetate decarboxylase subunit gamma NP_459746.1 829868 D 99287 CDS NP_459747.1 16764132 1252288 831919..833220 1 NC_003197.1 oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); oxaloacetate decarboxylase subunit beta 833220 dcoB 1252288 dcoB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxaloacetate decarboxylase subunit beta NP_459747.1 831919 D 99287 CDS NP_459748.1 16764133 1252289 833339..834037 1 NC_003197.1 cytoplasmic protein 834037 1252289 STM0769 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459748.1 833339 D 99287 CDS NP_459749.1 16764134 1252290 834417..835496 1 NC_003197.1 cobalamin/Fe3+-siderophore ABC transporter permease 835496 1252290 STM0770 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalamin/Fe3+-siderophore ABC transporter permease NP_459749.1 834417 D 99287 CDS NP_459750.1 16764135 1252291 835496..836272 1 NC_003197.1 cobalamin/Fe3+-siderophore ABC transporter ATP-binding protein 836272 1252291 STM0771 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalamin/Fe3+-siderophore ABC transporter ATP-binding protein NP_459750.1 835496 D 99287 CDS NP_459751.1 16764136 1252292 complement(836363..837115) 1 NC_003197.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 837115 gpmA 1252292 gpmA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoglyceromutase NP_459751.1 836363 R 99287 CDS NP_459752.1 16764137 1252293 complement(837339..838379) 1 NC_003197.1 catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase 838379 galM 1252293 galM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aldose 1-epimerase NP_459752.1 837339 R 99287 CDS NP_459753.1 16764138 1252294 complement(838373..839521) 1 NC_003197.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 839521 galK 1252294 galK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 galactokinase NP_459753.1 838373 R 99287 CDS NP_459754.1 16764139 1252295 complement(839524..840570) 1 NC_003197.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-phosphate uridylyltransferase 840570 galT 1252295 galT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 galactose-phosphate uridylyltransferase NP_459754.1 839524 R 99287 CDS NP_459755.1 16764140 1252296 complement(840581..841597) 1 NC_003197.1 UDP-glucose 4-epimerase (SW:GALE_SALTY); UDP-galactose-4-epimerase 841597 galE 1252296 galE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-galactose-4-epimerase NP_459755.1 840581 R 99287 CDS NP_459756.1 16764141 1252297 complement(841820..842728) 1 NC_003197.1 inner membrane protein 842728 1252297 STM0777 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459756.1 841820 R 99287 CDS NP_459757.1 16764142 1252298 complement(842899..844374) 1 NC_003197.1 contains 2 ATP-binding cassettes; involved in the transport of molybdenum; molybdenum ABC transporter ATP-binding protein ModF 844374 modF 1252298 modF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molybdenum ABC transporter ATP-binding protein ModF NP_459757.1 842899 R 99287 CDS NP_459758.1 16764143 1252299 complement(844442..845230) 1 NC_003197.1 represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional repressor ModE 845230 modE 1252299 modE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional repressor ModE NP_459758.1 844442 R 99287 CDS NP_459759.1 16764144 1252300 845359..845508 1 NC_003197.1 hypothetical protein 845508 1252300 STM0780 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459759.1 845359 D 99287 CDS NP_459760.1 16764145 1252301 845675..846448 1 NC_003197.1 with ModCB is involved in the high-affinity transport of molybdate; molybdate ABC transporter substrate-binding protein ModA 846448 modA 1252301 modA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molybdate ABC transporter substrate-binding protein ModA NP_459760.1 845675 D 99287 CDS NP_459761.1 16764146 1252302 846448..847137 1 NC_003197.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease ModB 847137 modB 1252302 modB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molybdate ABC transporter permease ModB NP_459761.1 846448 D 99287 CDS NP_459762.1 16764147 1252303 847140..848198 1 NC_003197.1 Part of the ABC transporter complex modABC involved in molybdenum import; molybdate ABC transporter ATP-binding protein ModC 848198 modC 1252303 modC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molybdate ABC transporter ATP-binding protein ModC NP_459762.1 847140 D 99287 CDS NP_459763.1 16764148 1252304 complement(848199..849017) 1 NC_003197.1 YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily; phosphotransferase 849017 ybhA 1252304 ybhA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphotransferase NP_459763.1 848199 R 99287 CDS NP_459764.1 16764149 1252305 849181..850176 1 NC_003197.1 catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 850176 ybhE 1252305 ybhE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 6-phosphogluconolactonase NP_459764.1 849181 D 99287 CDS NP_459765.1 16764150 1252306 complement(850320..851603) 1 NC_003197.1 outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; pectinesterase 851603 ybhC 1252306 ybhC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pectinesterase NP_459765.1 850320 R 99287 CDS NP_459766.1 16764151 1252307 851841..853064 1 NC_003197.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 853064 hutI 1252307 hutI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 imidazolonepropionase NP_459766.1 851841 D 99287 CDS NP_459767.1 16764152 1252308 853061..854002 1 NC_003197.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 854002 hutG 1252308 hutG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formimidoylglutamase NP_459767.1 853061 D 99287 CDS NP_459768.1 16764153 1252309 854047..854772 1 NC_003197.1 histidine utilization repressor 854772 hutC 1252309 hutC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 histidine utilization repressor NP_459768.1 854047 D 99287 CDS NP_459769.1 16764154 1252311 856655..858175 1 NC_003197.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 858175 hutH 1252311 hutH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 histidine ammonia-lyase NP_459769.1 856655 D 99287 CDS NP_459770.1 16764155 1252312 complement(858260..858736) 1 NC_003197.1 kinase inhibitor protein 858736 ybhB 1252312 ybhB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 kinase inhibitor protein NP_459770.1 858260 R 99287 CDS NP_459771.1 16764156 1252313 complement(858794..860083) 1 NC_003197.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate aminotransferase 860083 bioA 1252313 bioA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 adenosylmethionine--8-amino-7-oxononanoate aminotransferase NP_459771.1 858794 R 99287 CDS NP_459772.1 16764157 1252314 860170..861210 1 NC_003197.1 biotin synthetase 861210 bioB 1252314 bioB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 biotin synthetase NP_459772.1 860170 D 99287 CDS NP_459773.1 16764158 1252315 861207..862364 1 NC_003197.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 862364 bioF 1252315 bioF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 8-amino-7-oxononanoate synthase NP_459773.1 861207 D 99287 CDS NP_459774.1 16764159 1252316 862348..863103 1 NC_003197.1 biotin biosynthesis protein BioC; methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth; malonyl-ACP O-methyltransferase 863103 bioC 1252316 bioC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 malonyl-ACP O-methyltransferase NP_459774.1 862348 D 99287 CDS NP_459775.1 16764160 1252317 863096..863782 1 NC_003197.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 863782 bioD 1252317 bioD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dithiobiotin synthetase NP_459775.1 863096 D 99287 CDS NP_459776.1 16764161 1252318 864433..866454 1 NC_003197.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 866454 uvrB 1252318 uvrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 excinuclease ABC subunit B NP_459776.1 864433 D 99287 CDS NP_459778.1 16764163 1252320 866944..869241 1 NC_003197.1 leucine-rich repeat protein SlrP; secreted by SPI-1; type III secretion; E3 ubiquitin-protein ligase SlrP 869241 slrP 1252320 slrP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 E3 ubiquitin-protein ligase SlrP NP_459778.1 866944 D 99287 CDS NP_459779.1 16764164 1252321 complement(869333..870241) 1 NC_003197.1 hypothetical protein 870241 1252321 STM0801 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459779.1 869333 R 99287 CDS NP_459780.1 16764165 1252322 870638..871627 1 NC_003197.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; cyclic pyranopterin monophosphate synthase 871627 moaA 1252322 moaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cyclic pyranopterin monophosphate synthase NP_459780.1 870638 D 99287 CDS NP_459781.1 16764166 1252323 871649..872161 1 NC_003197.1 molybdopterin biosynthesis protein B 872161 moaB 1252323 moaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molybdopterin biosynthesis protein B NP_459781.1 871649 D 99287 CDS NP_459782.1 16764167 1252324 872164..872649 1 NC_003197.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; cyclic pyranopterin monophosphate synthase accessory protein 872649 moaC 1252324 moaC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cyclic pyranopterin monophosphate synthase accessory protein NP_459782.1 872164 D 99287 CDS NP_459783.2 161353607 1252325 872642..872887 1 NC_003197.1 with MoaE catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 872887 moaD 1252325 moaD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molybdopterin synthase small subunit NP_459783.2 872642 D 99287 CDS NP_459784.1 16764169 1252326 872889..873341 1 NC_003197.1 with MoaD catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase catalytic subunit 873341 moaE 1252326 moaE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molybdopterin synthase catalytic subunit NP_459784.1 872889 D 99287 CDS NP_459785.1 16764170 1252327 873389..874093 1 NC_003197.1 permease 874093 ybhL 1252327 ybhL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_459785.1 873389 D 99287 CDS NP_459786.1 16764171 1252328 874240..874947 1 NC_003197.1 integral membrane protein 874947 ybhM 1252328 ybhM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integral membrane protein NP_459786.1 874240 D 99287 CDS NP_459787.1 16764172 1252329 874971..875579 1 NC_003197.1 inner membrane protein 875579 1252329 STM0809 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459787.1 874971 D 99287 CDS NP_459788.1 16764173 1252330 875587..876147 1 NC_003197.1 inner membrane protein 876147 1252330 STM0810 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459788.1 875587 D 99287 CDS NP_459789.1 16764174 1252331 complement(876150..877112) 1 NC_003197.1 negative regulator 877112 ybhN 1252331 ybhN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 negative regulator NP_459789.1 876150 R 99287 CDS NP_459790.1 16764175 1252332 complement(877112..878353) 1 NC_003197.1 cardiolipin synthase 878353 ybhO 1252332 ybhO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cardiolipin synthase NP_459790.1 877112 R 99287 CDS NP_459791.1 16764176 1252333 complement(878350..879108) 1 NC_003197.1 cytoplasmic protein 879108 ybhP 1252333 ybhP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459791.1 878350 R 99287 CDS NP_459792.1 16764177 1252334 879241..879651 1 NC_003197.1 inner membrane protein 879651 ybhQ 1252334 ybhQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459792.1 879241 D 99287 CDS NP_459793.1 16764178 1252335 complement(879613..880719) 1 NC_003197.1 ABC superfamily membrane protein; ABC transporter permease 880719 ybhR 1252335 ybhR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter permease NP_459793.1 879613 R 99287 CDS NP_459794.1 16764179 1252336 complement(880835..881965) 1 NC_003197.1 ABC superfamily membrane protein; ABC transporter permease 881965 ybhS 1252336 ybhS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter permease NP_459794.1 880835 R 99287 CDS NP_459795.1 16764180 1252337 complement(881958..883694) 1 NC_003197.1 ABC transporter ATP-binding protein 883694 ybhF 1252337 ybhF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter ATP-binding protein NP_459795.1 881958 R 99287 CDS NP_459796.1 16764181 1252338 complement(883687..884682) 1 NC_003197.1 hypothetical protein 884682 1252338 STM0818 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459796.1 883687 R 99287 CDS NP_459797.1 16764182 1252339 complement(884682..885356) 1 NC_003197.1 etR/AcrR family transcriptional regulator 885356 ybiH 1252339 ybiH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 etR/AcrR family transcriptional regulator NP_459797.1 884682 R 99287 CDS NP_459798.1 16764183 1252340 885586..886950 1 NC_003197.1 this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 886950 rhlE 1252340 rhlE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent RNA helicase RhlE NP_459798.1 885586 D 99287 CDS NP_459799.1 16764184 1252341 887158..889302 1 NC_003197.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 889302 dinG 1252341 dinG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent DNA helicase DinG NP_459799.1 887158 D 99287 CDS NP_459800.1 16764185 1252342 889332..890306 1 NC_003197.1 transferase 890306 ybiB 1252342 ybiB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transferase NP_459800.1 889332 D 99287 CDS NP_459801.1 16764186 1252343 complement(890462..890722) 1 NC_003197.1 periplasmic protein 890722 ybiJ 1252343 ybiJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_459801.1 890462 R 99287 CDS NP_459802.1 16764187 1252344 complement(891007..891273) 1 NC_003197.1 DnaK suppressor protein 891273 ybiI 1252344 ybiI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DnaK suppressor protein NP_459802.1 891007 R 99287 CDS NP_459803.1 16764188 1252345 891478..892404 1 NC_003197.1 rRNA large subunit methyltransferase 892404 1252345 STM0826 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA large subunit methyltransferase NP_459803.1 891478 D 99287 CDS NP_459804.1 16764189 1252346 complement(892401..894623) 1 NC_003197.1 mechanosensitive channel protein 894623 ybiO 1252346 ybiO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mechanosensitive channel protein NP_459804.1 892401 R 99287 CDS NP_459805.1 16764190 1252347 complement(894742..895464) 1 NC_003197.1 glutamine ABC transporter ATP-binding protein 895464 glnQ 1252347 glnQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamine ABC transporter ATP-binding protein NP_459805.1 894742 R 99287 CDS NP_459806.1 16764191 1252348 complement(895461..896120) 1 NC_003197.1 glutamine ABC transporter permease 896120 glnP 1252348 glnP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamine ABC transporter permease NP_459806.1 895461 R 99287 CDS NP_459807.1 16764192 1252349 complement(896264..897010) 1 NC_003197.1 glutamine ABC transporter substrate-binding protein 897010 glnH 1252349 glnH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamine ABC transporter substrate-binding protein NP_459807.1 896264 R 99287 CDS NP_459808.1 16764193 1252350 complement(897487..897990) 1 NC_003197.1 binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein 897990 dps 1252350 dps Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA starvation/stationary phase protection protein NP_459808.1 897487 R 99287 CDS NP_459809.1 16764194 1252351 complement(898293..899180) 1 NC_003197.1 hypothetical protein in dps-ompX intergenic region (SW:YBIF_SALTY); threonine/homoserine exporter RhtA 899180 ybiF 1252351 ybiF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 threonine/homoserine exporter RhtA NP_459809.1 898293 R 99287 CDS NP_459810.1 16764195 1252352 899534..900049 1 NC_003197.1 OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protease 900049 ompX 1252352 ompX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protease NP_459810.1 899534 D 99287 CDS NP_459811.1 16764196 1252353 complement(900112..901692) 1 NC_003197.1 integral membrane protein 901692 ybiP 1252353 ybiP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integral membrane protein NP_459811.1 900112 R 99287 CDS NP_459812.1 16764197 1252354 902271..902744 1 NC_003197.1 Transcriptional regulator that represses the manganese transporter MntH when manganese is present; transcriptional regulator MntR 902744 1252354 STM0835 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator MntR NP_459812.1 902271 D 99287 CDS NP_459813.1 16764198 1252355 902741..903853 1 NC_003197.1 di-/tricarboxylate transporter 903853 ybiR 1252355 ybiR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 di-/tricarboxylate transporter NP_459813.1 902741 D 99287 CDS NP_459814.1 16764199 1252356 complement(903897..904817) 1 NC_003197.1 periplasmic protein 904817 ybiS 1252356 ybiS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_459814.1 903897 R 99287 CDS NP_459815.1 16764200 1252357 905036..906628 1 NC_003197.1 ABC transporter ATP-binding protein 906628 ybiT 1252357 ybiT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter ATP-binding protein NP_459815.1 905036 D 99287 CDS NP_459816.1 16764201 1252358 907237..907980 1 NC_003197.1 inner membrane protein 907980 1252358 STM0839 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459816.1 907237 D 99287 CDS NP_459817.1 16764202 1252359 complement(908009..908728) 1 NC_003197.1 HAD superfamily hydrolase 908728 1252359 STM0840 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HAD superfamily hydrolase NP_459817.1 908009 R 99287 CDS NP_459818.1 16764203 1252360 complement(908933..910198) 1 NC_003197.1 cytoplasmic protein 910198 ybiU 1252360 ybiU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459818.1 908933 R 99287 CDS NP_459819.1 16764204 1252361 910460..911269 1 NC_003197.1 HAD superfamily; HAD superfamily hydrolase 911269 1252361 STM0842 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HAD superfamily hydrolase NP_459819.1 910460 D 99287 CDS NP_459820.1 16764205 1252362 complement(911347..913779) 1 NC_003197.1 pyruvate formate lyase 913779 pflF 1252362 pflF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate formate lyase NP_459820.1 911347 R 99287 CDS NP_459821.1 16764206 1252363 complement(913785..914684) 1 NC_003197.1 pyruvate formate lyase activating enzyme 914684 pflE 1252363 pflE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate formate lyase activating enzyme NP_459821.1 913785 R 99287 CDS NP_459822.1 16764207 1252364 complement(914962..915711) 1 NC_003197.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin-synthase adenylyltransferase 915711 moeB 1252364 moeB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molybdopterin-synthase adenylyltransferase NP_459822.1 914962 R 99287 CDS NP_459823.2 308065968 1252365 complement(915711..916946) 1 NC_003197.1 is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin molybdenumtransferase 916946 moeA 1252365 moeA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molybdopterin molybdenumtransferase NP_459823.2 915711 R 99287 CDS NP_459824.1 16764209 1252366 917149..918090 1 NC_003197.1 isoaspartyl peptidase 918090 iaaA 1252366 iaaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 isoaspartyl peptidase NP_459824.1 917149 D 99287 CDS NP_459825.1 16764210 1252367 918101..919972 1 NC_003197.1 with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione ABC transporter ATP-binding protein GsiA 919972 gsiA 1252367 gsiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione ABC transporter ATP-binding protein GsiA NP_459825.1 918101 D 99287 CDS NP_459826.1 16764211 1252368 920005..921543 1 NC_003197.1 glutathione ABC transporter substrate-binding protein GsiB 921543 1252368 STM0849 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione ABC transporter substrate-binding protein GsiB NP_459826.1 920005 D 99287 CDS NP_459827.1 16764212 1252369 921604..922524 1 NC_003197.1 glutathione ABC transporter permease GsiC 922524 1252369 STM0850 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione ABC transporter permease GsiC NP_459827.1 921604 D 99287 CDS NP_459828.1 16764213 1252370 922527..923438 1 NC_003197.1 glutathione ABC transporter permease GsiD 923438 1252370 STM0851 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione ABC transporter permease GsiD NP_459828.1 922527 D 99287 CDS NP_459829.1 16764214 1252371 complement(923529..924854) 1 NC_003197.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase RimO 924854 rimO 1252371 rimO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribosomal protein S12 methylthiotransferase RimO NP_459829.1 923529 R 99287 CDS NP_459830.1 16764215 1252372 925085..925468 1 NC_003197.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssR 925468 bssR 1252372 bssR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 biofilm formation regulatory protein BssR NP_459830.1 925085 D 99287 CDS NP_459831.1 16764216 1252373 926181..926696 1 NC_003197.1 cytoplasmic protein 926696 1252373 STM0854 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459831.1 926181 D 99287 CDS NP_459832.2 409994401 1252374 926719..927468 1 NC_003197.1 electron transfer protein subunit beta 927468 1252374 STM0855 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 electron transfer protein subunit beta NP_459832.2 926719 D 99287 CDS NP_459833.1 16764218 1252375 927479..928426 1 NC_003197.1 electron transfer protein subunit alpha 928426 1252375 STM0856 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 electron transfer protein subunit alpha NP_459833.1 927479 D 99287 CDS NP_459834.1 16764219 1252376 928720..929883 1 NC_003197.1 acyl-CoA dehydrogenase 929883 1252376 STM0857 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acyl-CoA dehydrogenase NP_459834.1 928720 D 99287 CDS NP_459835.1 16764220 1252377 930332..932017 1 NC_003197.1 dehydrogenase 932017 1252377 STM0858 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dehydrogenase NP_459835.1 930332 D 99287 CDS NP_459836.1 16764221 1252378 complement(932023..932913) 1 NC_003197.1 LysR family transcriptional regulator 932913 1252378 STM0859 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_459836.1 932023 R 99287 CDS NP_459837.1 16764222 1252379 complement(933178..933603) 1 NC_003197.1 inner membrane protein 933603 1252379 STM0860 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459837.1 933178 R 99287 CDS YP_006892380.1 409994402 1252380 933950..934630 1 NC_003197.1 dehydrogenase 934630 1252380 STM0861 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dehydrogenase YP_006892380.1 933950 D 99287 CDS NP_459839.1 16764224 1252381 complement(934627..935253) 1 NC_003197.1 glutathione S-transferase 935253 yliJ 1252381 yliJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione S-transferase NP_459839.1 934627 R 99287 CDS NP_459840.1 16764225 1252382 935497..936699 1 NC_003197.1 penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 936699 dacC 1252382 dacC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-alanyl-D-alanine carboxypeptidase NP_459840.1 935497 D 99287 CDS NP_459841.1 16764226 1252383 complement(936744..937502) 1 NC_003197.1 DeoR family transcriptional repressor 937502 deoR 1252383 deoR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DeoR family transcriptional repressor NP_459841.1 936744 R 99287 CDS NP_459842.1 16764227 1252384 complement(937574..938182) 1 NC_003197.1 undecaprenyl pyrophosphate phosphatase 938182 ybjG 1252384 ybjG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 undecaprenyl pyrophosphate phosphatase NP_459842.1 937574 R 99287 CDS NP_459843.1 16764228 1252385 938495..939727 1 NC_003197.1 multidrug translocase 939727 mdfA 1252385 mdfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug translocase NP_459843.1 938495 D 99287 CDS NP_459844.1 16764229 1252386 complement(939781..940596) 1 NC_003197.1 hydrolase 940596 1252386 STM0867 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrolase NP_459844.1 939781 R 99287 CDS NP_459845.1 16764230 1252387 complement(940593..941804) 1 NC_003197.1 transport protein/regulator 941804 1252387 STM0868 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transport protein/regulator NP_459845.1 940593 R 99287 CDS NP_459846.1 16764231 1252388 941972..942592 1 NC_003197.1 TetR/Acr family regulator 942592 1252388 STM0869 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 TetR/Acr family regulator NP_459846.1 941972 D 99287 CDS NP_459847.1 16764232 1252389 complement(942709..944394) 1 NC_003197.1 transport protein 944394 1252389 STM0870 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transport protein NP_459847.1 942709 R 99287 CDS NP_459848.1 16764233 1252390 944665..945042 1 NC_003197.1 inner membrane protein 945042 ybjM 1252390 ybjM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459848.1 944665 D 99287 CDS NP_459849.1 16764234 1252391 complement(945074..945337) 1 NC_003197.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 945337 grxA 1252391 grxA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutaredoxin NP_459849.1 945074 R 99287 CDS NP_459850.1 16764235 1252392 945507..945797 1 NC_003197.1 YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 945797 1252392 STM0873 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459850.1 945507 D 99287 CDS NP_459851.1 16764236 1252393 945781..946503 1 NC_003197.1 NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase 946503 mdaA 1252393 mdaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitroreductase NP_459851.1 945781 D 99287 CDS NP_459852.1 16764237 1252394 946561..947463 1 NC_003197.1 responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6--L-glutamate ligase 947463 rimK 1252394 rimK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribosomal protein S6--L-glutamate ligase NP_459852.1 946561 D 99287 CDS NP_459853.1 16764238 1252395 947560..948036 1 NC_003197.1 cytoplasmic protein 948036 ybjN 1252395 ybjN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459853.1 947560 D 99287 CDS NP_459854.1 16764239 1252396 948385..949497 1 NC_003197.1 putrescine ABC transporter substrate-binding protein PotF 949497 potF 1252396 potF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putrescine ABC transporter substrate-binding protein PotF NP_459854.1 948385 D 99287 CDS NP_459855.1 16764240 1252397 949585..950718 1 NC_003197.1 part of the PotFGHI ATP-dependent putrescine transporter; putrescine ABC transporter ATP-binding protein PotG 950718 potG 1252397 potG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putrescine ABC transporter ATP-binding protein PotG NP_459855.1 949585 D 99287 CDS NP_459856.1 16764241 1252398 950728..951681 1 NC_003197.1 putrescine ABC transporter permease PotH 951681 potH 1252398 potH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putrescine ABC transporter permease PotH NP_459856.1 950728 D 99287 CDS NP_459857.1 16764242 1252399 951678..952523 1 NC_003197.1 putrescine ABC transporter permease PotH 952523 potI 1252399 potI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putrescine ABC transporter permease PotH NP_459857.1 951678 D 99287 CDS NP_459858.1 16764243 1252400 952597..953070 1 NC_003197.1 inner membrane protein 953070 ybjO 1252400 ybjO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459858.1 952597 D 99287 CDS NP_459859.1 16764244 1252401 953113..954243 1 NC_003197.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA (uracil(747)-C(5))-methyltransferase 954243 rumB 1252401 rumB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 23S rRNA (uracil(747)-C(5))-methyltransferase NP_459859.1 953113 D 99287 CDS NP_459860.1 16764245 1252402 954526..955869 1 NC_003197.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 955869 ulaA 1252402 ulaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system ascorbate-specific transporter subunit IIC NP_459860.1 954526 D 99287 CDS NP_459861.1 16764246 1252403 955899..956219 1 NC_003197.1 inner membrane protein 956219 1252403 STM0885 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459861.1 955899 D 99287 CDS NP_459862.1 16764247 1252404 956229..957716 1 NC_003197.1 sulfatase 957716 1252404 STM0886 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfatase NP_459862.1 956229 D 99287 CDS NP_459863.1 16764248 1252405 complement(957935..958666) 1 NC_003197.1 arginine ABC transporter substrate-binding protein ArtJ 958666 artJ 1252405 artJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arginine ABC transporter substrate-binding protein ArtJ NP_459863.1 957935 R 99287 CDS NP_459864.1 16764249 1252406 complement(958903..959571) 1 NC_003197.1 with ArtPQJI acts to transport arginine across the inner membrane; arginine ABC transporter permease ArtM 959571 artM 1252406 artM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arginine ABC transporter permease ArtM NP_459864.1 958903 R 99287 CDS NP_459865.1 16764250 1252407 complement(959571..960287) 1 NC_003197.1 with ArtPMJI transports arginine across the inner membrane; arginine ABC transporter permease ArtQ 960287 artQ 1252407 artQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arginine ABC transporter permease ArtQ NP_459865.1 959571 R 99287 CDS NP_459866.1 16764251 1252408 complement(960294..961025) 1 NC_003197.1 arginine ABC transporter substrate-binding protein ArtI 961025 artI 1252408 artI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arginine ABC transporter substrate-binding protein ArtI NP_459866.1 960294 R 99287 CDS NP_459867.1 16764252 1252409 complement(961043..961771) 1 NC_003197.1 With ArtMQJI transports arginine across the inner membrane; arginine ABC transporter ATP-binding protein ArtP 961771 artP 1252409 artP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arginine ABC transporter ATP-binding protein ArtP NP_459867.1 961043 R 99287 CDS NP_459868.1 16764253 1252410 complement(962001..962516) 1 NC_003197.1 induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; lipoprotein 962516 ybjP 1252410 ybjP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein NP_459868.1 962001 R 99287 CDS NP_459869.1 16764254 1252411 complement(962612..963937) 1 NC_003197.1 integrase 963937 1252411 STM0893 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integrase NP_459869.1 962612 R 99287 CDS NP_459870.1 16764255 1252412 complement(963965..964207) 1 NC_003197.1 excisionase 964207 1252412 STM0894 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 excisionase NP_459870.1 963965 R 99287 CDS NP_951048.1 39980851 2673774 complement(964215..964361) 1 NC_003197.1 hypothetical protein 964361 2673774 STM0895.1n Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_951048.1 964215 R 99287 CDS NP_459871.1 16764256 1252413 complement(964573..964881) 1 NC_003197.1 hypothetical protein 964881 1252413 STM0895 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459871.1 964573 R 99287 CDS NP_459872.1 16764257 1252414 complement(965341..965733) 1 NC_003197.1 hypothetical protein 965733 1252414 STM0896 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459872.1 965341 R 99287 CDS NP_459873.1 16764258 1252415 complement(966309..966725) 1 NC_003197.1 hypothetical protein 966725 1252415 STM0897 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459873.1 966309 R 99287 CDS YP_006892381.1 409994403 13865726 complement(967046..967231) 1 NC_003197.1 hypothetical protein 967231 13865726 STM04865 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892381.1 967046 R 99287 CDS YP_006892382.1 409994404 13865707 complement(967228..967422) 1 NC_003197.1 hypothetical protein 967422 13865707 STM04870 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892382.1 967228 R 99287 CDS YP_006892383.1 409994405 13865719 complement(967415..967732) 1 NC_003197.1 hypothetical protein 967732 13865719 STM04875 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892383.1 967415 R 99287 CDS NP_459874.1 16764259 1252416 complement(967911..968606) 1 NC_003197.1 prophage transcriptional regulator 968606 1252416 STM0898 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 prophage transcriptional regulator NP_459874.1 967911 R 99287 CDS NP_459875.1 16764260 1252417 968719..968973 1 NC_003197.1 hypothetical protein 968973 1252417 STM0898A Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459875.1 968719 D 99287 CDS NP_459876.1 16764261 1252418 969473..969841 1 NC_003197.1 hypothetical protein 969841 1252418 STM0899 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459876.1 969473 D 99287 CDS NP_459877.1 16764262 1252419 969999..971582 1 NC_003197.1 prophage helicase 971582 1252419 STM0900 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 prophage helicase NP_459877.1 969999 D 99287 CDS NP_459878.1 16764263 1252420 971579..972547 1 NC_003197.1 prophage DNA primase 972547 1252420 STM0901 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 prophage DNA primase NP_459878.1 971579 D 99287 CDS NP_459879.1 16764264 1252421 972547..973407 1 NC_003197.1 hypothetical protein 973407 1252421 STM0902 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459879.1 972547 D 99287 CDS NP_459880.1 16764265 1252422 973404..974219 1 NC_003197.1 prophage chaperone 974219 1252422 STM0903 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 prophage chaperone NP_459880.1 973404 D 99287 CDS NP_459881.1 16764266 1252423 complement(974374..974766) 1 NC_003197.1 hypothetical protein 974766 1252423 STM0904 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459881.1 974374 R 99287 CDS NP_459882.1 16764267 1252424 975824..976222 1 NC_003197.1 hypothetical protein 976222 1252424 STM0905 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459882.1 975824 D 99287 CDS NP_459883.1 16764268 1252425 976812..977156 1 NC_003197.1 hypothetical protein 977156 1252425 STM0906 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459883.1 976812 D 99287 CDS NP_459884.1 16764269 1252426 977159..977773 1 NC_003197.1 prophage chitinase 977773 1252426 STM0907 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 prophage chitinase NP_459884.1 977159 D 99287 CDS NP_459885.1 16764270 1252427 977770..978255 1 NC_003197.1 bacteriophage ES18 gp15 protein; hypothetical protein 978255 1252427 STM0908 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459885.1 977770 D 99287 CDS YP_006892384.1 409994406 13865702 complement(978547..978738) 1 NC_003197.1 hypothetical protein 978738 13865702 STM04890 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892384.1 978547 R 99287 CDS YP_006892385.1 409994407 13865717 complement(978814..979038) 1 NC_003197.1 hypothetical protein 979038 13865717 STM04895 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892385.1 978814 R 99287 CDS NP_459886.1 16764271 1252428 979090..979581 1 NC_003197.1 hypothetical protein 979581 1252428 STM0909 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459886.1 979090 D 99287 CDS NP_459887.1 16764272 1252429 979568..981676 1 NC_003197.1 hypothetical protein 981676 1252429 STM0910 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459887.1 979568 D 99287 CDS NP_459888.1 16764273 1252430 981876..983411 1 NC_003197.1 hypothetical protein 983411 1252430 STM0911 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459888.1 981876 D 99287 CDS NP_459889.2 409994408 1252431 983374..985449 1 NC_003197.1 ATP-dependent Clp protease proteolytic subunit 985449 1252431 STM0912 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent Clp protease proteolytic subunit NP_459889.2 983374 D 99287 CDS NP_459890.1 16764275 1252432 complement(985463..986134) 1 NC_003197.1 hypothetical protein 986134 1252432 STM0913 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459890.1 985463 R 99287 CDS NP_459891.1 16764276 1252433 986133..986717 1 NC_003197.1 phage tail protein 986717 1252433 STM0914 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail protein NP_459891.1 986133 D 99287 CDS NP_459892.1 16764277 1252434 986714..987115 1 NC_003197.1 hypothetical protein 987115 1252434 STM0915 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459892.1 986714 D 99287 CDS NP_459893.1 16764278 1252435 987126..987869 1 NC_003197.1 phage major tail protein 987869 1252435 STM0916 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage major tail protein NP_459893.1 987126 D 99287 CDS NP_945158.1 39546305 2673747 987914..988318 1 NC_003197.1 hypothetical protein 988318 2673747 STM0916.1N Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945158.1 987914 D 99287 CDS NP_459894.1 16764279 1252436 988336..988653 1 NC_003197.1 phage minor tail protein 988653 1252436 STM0917 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage minor tail protein NP_459894.1 988336 D 99287 CDS NP_459895.1 16764280 1252437 988625..991786 1 NC_003197.1 phage minor tail protein 991786 1252437 STM0918 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage minor tail protein NP_459895.1 988625 D 99287 CDS NP_459896.1 16764281 1252438 991786..992115 1 NC_003197.1 minor tail protein 992115 1252438 STM0919 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor tail protein NP_459896.1 991786 D 99287 CDS NP_459897.1 16764282 1252439 992242..992760 1 NC_003197.1 Ail/OmpX-like protein 992760 1252439 STM0920 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Ail/OmpX-like protein NP_459897.1 992242 D 99287 CDS NP_459898.1 16764283 1252440 992892..993587 1 NC_003197.1 minor tail protein 993587 1252440 STM0921 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor tail protein NP_459898.1 992892 D 99287 CDS NP_459899.1 16764284 1252441 993599..994333 1 NC_003197.1 phage tail assembly protein 994333 1252441 STM0922 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail assembly protein NP_459899.1 993599 D 99287 CDS NP_459900.1 16764285 1252442 994231..994908 1 NC_003197.1 phage tail assembly protein 994908 1252442 STM0923 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail assembly protein NP_459900.1 994231 D 99287 CDS NP_459901.1 16764286 1252443 complement(994962..995486) 1 NC_003197.1 CuZn superoxide dismutase 995486 1252443 STM0924 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 CuZn superoxide dismutase NP_459901.1 994962 R 99287 CDS NP_459902.2 39546306 1252444 995631..999026 1 NC_003197.1 host-specificity protein 999026 1252444 STM0925.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 host-specificity protein NP_459902.2 995631 D 99287 CDS NP_459903.1 16764288 1252445 999070..1001442 1 NC_003197.1 minor tail protein 1001442 1252445 STM0926 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor tail protein NP_459903.1 999070 D 99287 CDS NP_459904.1 16764289 1252446 1001442..1002017 1 NC_003197.1 phage tail fiber assembly protein 1002017 1252446 STM0927 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail fiber assembly protein NP_459904.1 1001442 D 99287 CDS NP_459905.1 16764290 1252447 complement(1002088..1003326) 1 NC_003197.1 neuraminidase; sialidase 1003326 nanH 1252447 nanH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sialidase NP_459905.1 1002088 R 99287 CDS NP_459906.1 16764291 1252448 complement(1003900..1004271) 1 NC_003197.1 inner membrane protein 1004271 1252448 STM0929 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459906.1 1003900 R 99287 CDS NP_459907.1 16764292 1252449 1005367..1005690 1 NC_003197.1 hypothetical protein 1005690 1252449 STM0930 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459907.1 1005367 D 99287 CDS NP_459908.1 16764293 1252450 1005687..1006517 1 NC_003197.1 aminidase 1006517 ybjR 1252450 ybjR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aminidase NP_459908.1 1005687 D 99287 CDS NP_459909.1 16764294 1252451 complement(1006514..1007527) 1 NC_003197.1 nucleoside-diphosphate-sugar epimerase 1007527 1252451 STM0932 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleoside-diphosphate-sugar epimerase NP_459909.1 1006514 R 99287 CDS NP_459910.1 16764295 1252452 complement(1007623..1009056) 1 NC_003197.1 nucleoside-diphosphate-sugar epimerase 1009056 ybjT 1252452 ybjT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleoside-diphosphate-sugar epimerase NP_459910.1 1007623 R 99287 CDS NP_459911.1 16764296 1252453 complement(1009067..1010068) 1 NC_003197.1 low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine; L-threonine aldolase 1010068 ltaA 1252453 ltaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-threonine aldolase NP_459911.1 1009067 R 99287 CDS NP_459912.1 16764297 1252454 complement(1010107..1011825) 1 NC_003197.1 catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase 1011825 poxB 1252454 poxB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate dehydrogenase NP_459912.1 1010107 R 99287 CDS NP_459913.1 16764298 1252455 complement(1011983..1012954) 1 NC_003197.1 HCP oxidoreductase 1012954 hcr 1252455 hcr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HCP oxidoreductase NP_459913.1 1011983 R 99287 CDS NP_459914.1 16764299 1252456 complement(1012963..1014615) 1 NC_003197.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1014615 hcp 1252456 hcp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydroxylamine reductase NP_459914.1 1012963 R 99287 CDS NP_459915.1 16764300 1252457 complement(1014759..1015658) 1 NC_003197.1 inner membrane protein 1015658 ybjE 1252457 ybjE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459915.1 1014759 R 99287 CDS NP_459916.1 16764301 1252458 1015860..1017518 1 NC_003197.1 hypothetical protein 1017518 1252458 STM0939 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459916.1 1015860 D 99287 CDS NP_459917.1 16764302 1252459 complement(1017515..1018483) 1 NC_003197.1 VirK-like protein 1018483 ybjX 1252459 ybjX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 VirK-like protein NP_459917.1 1017515 R 99287 CDS NP_459918.1 16764303 1252460 1018611..1019729 1 NC_003197.1 confers macrolide resistance via active drug efflux; macrolide export protein MacA 1019729 macA 1252460 macA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 macrolide export protein MacA NP_459918.1 1018611 D 99287 CDS NP_459919.1 16764304 1252461 1019726..1021672 1 NC_003197.1 with MacA is involved in the export of macrolide; macrolide efflux ATP-binding protein/permease MacB 1021672 macB 1252461 macB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 macrolide efflux ATP-binding protein/permease MacB NP_459919.1 1019726 D 99287 CDS NP_459920.1 16764305 1252462 complement(1021802..1022023) 1 NC_003197.1 stress response protein 1022023 cspD 1252462 cspD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 stress response protein NP_459920.1 1021802 R 99287 CDS NP_459921.1 16764306 1252463 1022347..1022667 1 NC_003197.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1022667 clpS 1252463 clpS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent Clp protease adaptor protein ClpS NP_459921.1 1022347 D 99287 CDS NP_459922.1 16764307 1252464 1022698..1024974 1 NC_003197.1 ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 1024974 clpA 1252464 clpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent Clp protease ATP-binding subunit NP_459922.1 1022698 D 99287 CDS NP_459923.1 16764308 1252465 1025166..1025624 1 NC_003197.1 transposase for insertion sequence element IS200 (SW:T200_SALTY); insertion sequence element IS200 transposase 1025624 tnpA_1 1252465 tnpA_1 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 insertion sequence element IS200 transposase NP_459923.1 1025166 D 99287 CDS NP_459924.1 16764309 1252466 complement(1026087..1026770) 1 NC_003197.1 integrase 1026770 1252466 STM0947 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integrase NP_459924.1 1026087 R 99287 CDS NP_459925.1 16764310 1252467 complement(1026941..1027342) 1 NC_003197.1 cytoplasmic protein 1027342 1252467 STM0948 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459925.1 1026941 R 99287 CDS NP_459926.1 16764311 1252469 complement(1027679..1028356) 1 NC_003197.1 SlsA protein 1028356 1252469 STM0950 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SlsA protein NP_459926.1 1027679 R 99287 CDS NP_459927.1 16764312 1252470 complement(1028376..1029236) 1 NC_003197.1 cytoplasmic protein 1029236 1252470 STM0951 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459927.1 1028376 R 99287 CDS NP_459928.1 16764313 1252471 1029345..1030256 1 NC_003197.1 LysR family transcriptional regulator 1030256 1252471 STM0952 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_459928.1 1029345 D 99287 CDS NP_459929.1 16764314 1252472 complement(1030347..1030565) 1 NC_003197.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1030565 infA 1252472 infA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 translation initiation factor IF-1 NP_459929.1 1030347 R 99287 CDS NP_459930.1 16764315 1252473 complement(1030493..1030876) 1 NC_003197.1 inner membrane protein 1030876 1252473 STM0954 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459930.1 1030493 R 99287 CDS NP_459931.1 16764316 1252474 complement(1030877..1031581) 1 NC_003197.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1031581 aat 1252474 aat Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 leucyl/phenylalanyl-tRNA--protein transferase NP_459931.1 1030877 R 99287 CDS NP_459932.1 16764317 1252475 complement(1031626..1033347) 1 NC_003197.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter permease/ATP-binding protein CycC 1033347 cydC 1252475 cydC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cysteine/glutathione ABC transporter permease/ATP-binding protein CycC NP_459932.1 1031626 R 99287 CDS NP_459933.1 16764318 1252476 complement(1033348..1035114) 1 NC_003197.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter permease/ATP-binding protein CycD 1035114 cydD 1252476 cydD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cysteine/glutathione ABC transporter permease/ATP-binding protein CycD NP_459933.1 1033348 R 99287 CDS NP_459934.1 16764319 1252477 complement(1035228..1036196) 1 NC_003197.1 catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase 1036196 trxB 1252477 trxB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thioredoxin reductase NP_459934.1 1035228 R 99287 CDS NP_459935.1 16764320 1252478 1036742..1037236 1 NC_003197.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 1037236 lrp 1252478 lrp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 leucine-responsive transcriptional regulator NP_459935.1 1036742 D 99287 CDS NP_459936.1 16764321 1252479 1037371..1041426 1 NC_003197.1 DNA-binding membrane protein required for chromosome resolution and partitioning; DNA translocase FtsK 1041426 ftsK 1252479 ftsK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA translocase FtsK NP_459936.1 1037371 D 99287 CDS NP_459937.1 16764322 1252480 1041566..1042180 1 NC_003197.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1042180 lolA 1252480 lolA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer-membrane lipoprotein carrier protein NP_459937.1 1041566 D 99287 CDS NP_459938.1 16764323 1252481 1042190..1043533 1 NC_003197.1 DNA-dependent ATPase 1043533 ycaJ 1252481 ycaJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-dependent ATPase NP_459938.1 1042190 D 99287 CDS NP_459939.1 16764324 1252482 1043792..1045084 1 NC_003197.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; serine--tRNA ligase 1045084 serS 1252482 serS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 serine--tRNA ligase NP_459939.1 1043792 D 99287 CDS NP_459940.1 16764325 1252483 1045321..1047765 1 NC_003197.1 anaerobic dimethyl sulfoxide reductase subunit A 1047765 dmsA 1252483 dmsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic dimethyl sulfoxide reductase subunit A NP_459940.1 1045321 D 99287 CDS NP_459941.1 16764326 1252484 1047776..1048393 1 NC_003197.1 anaerobic dimethyl sulfoxide reductase subunit B 1048393 dmsB 1252484 dmsB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic dimethyl sulfoxide reductase subunit B NP_459941.1 1047776 D 99287 CDS NP_459942.1 16764327 1252485 1048395..1049258 1 NC_003197.1 anaerobic dimethyl sulfoxide reductase subunit C 1049258 dmsC 1252485 dmsC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic dimethyl sulfoxide reductase subunit C NP_459942.1 1048395 D 99287 CDS NP_459943.1 16764328 1252486 1049608..1050756 1 NC_003197.1 MFS family transporter protein 1050756 ycaD 1252486 ycaD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family transporter protein NP_459943.1 1049608 D 99287 CDS NP_459944.1 16764329 1252487 1050974..1052395 1 NC_003197.1 APC family amino-acid transporter 1052395 ycaM 1252487 ycaM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 APC family amino-acid transporter NP_459944.1 1050974 D 99287 CDS NP_459945.2 161353606 1252488 complement(1052688..1053485) 1 NC_003197.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 1053485 pflA 1252488 pflA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate formate lyase-activating enzyme 1 NP_459945.2 1052688 R 99287 CDS NP_459946.1 16764331 1252489 complement(1053604..1053930) 1 NC_003197.1 cytoplasmic protein 1053930 1252489 STM0971 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459946.1 1053604 R 99287 CDS NP_459947.1 16764332 1252490 1054061..1055020 1 NC_003197.1 secreted effector protein SopD2 1055020 1252490 STM0972 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secreted effector protein SopD2 NP_459947.1 1054061 D 99287 CDS NP_459948.1 16764333 1252491 complement(1055096..1057378) 1 NC_003197.1 pyruvate formate lyase I 1057378 pflB 1252491 pflB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate formate lyase I NP_459948.1 1055096 R 99287 CDS NP_459949.1 16764334 1252492 complement(1057438..1058295) 1 NC_003197.1 formate transporter 1058295 focA 1252492 focA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate transporter NP_459949.1 1057438 R 99287 CDS NP_459950.1 16764335 1252493 complement(1058700..1060460) 1 NC_003197.1 cytoplasmic protein 1060460 ycaO 1252493 ycaO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459950.1 1058700 R 99287 CDS NP_459951.1 16764336 1252494 1060597..1061289 1 NC_003197.1 inner membrane protein 1061289 ycaP 1252494 ycaP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_459951.1 1060597 D 99287 CDS NP_459952.1 16764337 1252495 1061475..1062563 1 NC_003197.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1062563 serC 1252495 serC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoserine aminotransferase NP_459952.1 1061475 D 99287 CDS NP_459953.1 16764338 1252496 1062634..1063917 1 NC_003197.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1063917 aroA 1252496 aroA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-phosphoshikimate 1-carboxyvinyltransferase NP_459953.1 1062634 D 99287 CDS NP_459954.1 16764339 1252497 1064060..1064821 1 NC_003197.1 Zn-dependent protease 1064821 ycaL 1252497 ycaL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Zn-dependent protease NP_459954.1 1064060 D 99287 CDS NP_459955.1 16764340 1252498 1064994..1065677 1 NC_003197.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1065677 cmk 1252498 cmk Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytidylate kinase NP_459955.1 1064994 D 99287 CDS NP_459956.1 16764341 1252499 1065791..1067464 1 NC_003197.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1067464 rpsA 1252499 rpsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S1 NP_459956.1 1065791 D 99287 CDS NP_459957.1 16764342 1252500 1067620..1067904 1 NC_003197.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1067904 ihfB 1252500 ihfB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integration host factor subunit beta NP_459957.1 1067620 D 99287 CDS NP_459958.1 16764343 1252501 1068134..1070398 1 NC_003197.1 hypothetical protein 1070398 1252501 STM0983 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459958.1 1068134 D 99287 CDS NP_459959.1 16764344 1252502 1070435..1072183 1 NC_003197.1 involved in the transport of lipid A across the inner membrane; lipid A export ATP-binding/permease 1072183 msbA 1252502 msbA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipid A export ATP-binding/permease NP_459959.1 1070435 D 99287 CDS NP_459960.1 16764345 1252503 1072180..1073157 1 NC_003197.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1073157 lpxK 1252503 lpxK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tetraacyldisaccharide 4'-kinase NP_459960.1 1072180 D 99287 CDS NP_459961.1 16764346 1252504 1073201..1074433 1 NC_003197.1 cytoplasmic protein 1074433 ycaQ 1252504 ycaQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_459961.1 1073201 D 99287 CDS NP_459962.1 16764347 1252505 1074485..1074667 1 NC_003197.1 hypothetical protein 1074667 1252505 STM0987 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459962.1 1074485 D 99287 CDS NP_459963.1 16764348 1252506 1074664..1075410 1 NC_003197.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1075410 kdsB 1252506 kdsB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-deoxy-manno-octulosonate cytidylyltransferase NP_459963.1 1074664 D 99287 CDS NP_459964.1 16764349 1252507 1075621..1076514 1 NC_003197.1 hypothetical protein 1076514 1252507 STM0989 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459964.1 1075621 D 99287 CDS NP_459965.1 16764350 1252508 complement(1076494..1077270) 1 NC_003197.1 hypothetical protein 1077270 1252508 STM0990 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459965.1 1076494 R 99287 CDS NP_459966.1 16764351 1252509 1077406..1078209 1 NC_003197.1 S-adenosylmethionine-dependent methyltransferase 1078209 smtA 1252509 smtA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 S-adenosylmethionine-dependent methyltransferase NP_459966.1 1077406 D 99287 CDS NP_459967.1 16764352 1252510 1078202..1079524 1 NC_003197.1 condesin subunit F; acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; chromosome partition protein MukF 1079524 mukF 1252510 mukF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome partition protein MukF NP_459967.1 1078202 D 99287 CDS NP_459968.1 16764353 1252511 1079505..1080209 1 NC_003197.1 condesin subunit E; acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; chromosome partition protein MukE 1080209 mukE 1252511 mukE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome partition protein MukE NP_459968.1 1079505 D 99287 CDS NP_459969.1 16764354 1252512 1080209..1084675 1 NC_003197.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; chromosome partition protein MukB 1084675 mukB 1252512 mukB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome partition protein MukB NP_459969.1 1080209 D 99287 CDS NP_459970.1 16764355 1252513 1085020..1086861 1 NC_003197.1 murein L,D-transpeptidase 1086861 ycbB 1252513 ycbB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 murein L,D-transpeptidase NP_459970.1 1085020 D 99287 CDS NP_459971.1 16764356 1252514 1087121..1087669 1 NC_003197.1 outer membrane protein 1087669 ycbK 1252514 ycbK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_459971.1 1087121 D 99287 CDS NP_459972.1 16764357 1252515 1087697..1088344 1 NC_003197.1 metallo-beta-lactamase 1088344 ycbL 1252515 ycbL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 metallo-beta-lactamase NP_459972.1 1087697 D 99287 CDS NP_459973.1 16764358 1252516 complement(1088406..1089596) 1 NC_003197.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aspartate aminotransferase 1089596 aspC 1252516 aspC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aspartate aminotransferase NP_459973.1 1088406 R 99287 CDS NP_459974.1 16764359 1252517 complement(1089781..1090872) 1 NC_003197.1 outer membrane protein F precursor; porin; (SW:OMPF_SALTY); outer membrane protein F 1090872 ompF 1252517 ompF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein F NP_459974.1 1089781 R 99287 CDS NP_459975.1 16764360 1252518 complement(1091479..1092879) 1 NC_003197.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; sparagine--tRNA ligase 1092879 asnC 1252518 asnC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sparagine--tRNA ligase NP_459975.1 1091479 R 99287 CDS NP_459976.1 16764361 1252519 complement(1093080..1093541) 1 NC_003197.1 leucine response regulator 1093541 1252519 STM1001 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 leucine response regulator NP_459976.1 1093080 R 99287 CDS NP_459977.1 16764362 1252520 1093858..1095072 1 NC_003197.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 1095072 1252520 STM1002 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diaminopropionate ammonia-lyase NP_459977.1 1093858 D 99287 CDS NP_459978.1 16764363 1252521 1095317..1096753 1 NC_003197.1 transcriptional regulator 1096753 1252521 STM1003 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_459978.1 1095317 D 99287 CDS NP_459979.1 16764364 1252522 complement(1096831..1098033) 1 NC_003197.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1098033 pncB 1252522 pncB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nicotinate phosphoribosyltransferase NP_459979.1 1096831 R 99287 CDS NP_459980.1 16764365 1252523 complement(1098228..1099520) 1 NC_003197.1 integrase 1099520 1252523 STM1005 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integrase NP_459980.1 1098228 R 99287 CDS NP_459981.1 16764366 1252524 complement(1099565..1099813) 1 NC_003197.1 excisionase 1099813 1252524 STM1006 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 excisionase NP_459981.1 1099565 R 99287 CDS NP_459982.1 16764367 1252525 complement(1099854..1100093) 1 NC_003197.1 hypothetical protein 1100093 1252525 STM1007 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459982.1 1099854 R 99287 CDS NP_459983.2 39546307 1252526 complement(1100136..1101245) 1 NC_003197.1 hypothetical protein 1101245 1252526 STM1008.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459983.2 1100136 R 99287 CDS NP_459984.1 16764369 1252527 complement(1101256..1104141) 1 NC_003197.1 exodeoxyribonuclease 1104141 1252527 STM1009 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 exodeoxyribonuclease NP_459984.1 1101256 R 99287 CDS NP_459985.1 16764370 1252528 complement(1104268..1104567) 1 NC_003197.1 hypothetical protein 1104567 1252528 STM1010 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459985.1 1104268 R 99287 CDS NP_945159.1 39546308 2673727 complement(1104589..1104747) 1 NC_003197.1 hypothetical protein 1104747 2673727 STM1010.1n Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945159.1 1104589 R 99287 CDS NP_459986.1 16764371 1252529 complement(1104740..1105000) 1 NC_003197.1 hypothetical protein 1105000 1252529 STM1011 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459986.1 1104740 R 99287 CDS NP_459987.1 16764372 1252530 complement(1105050..1105460) 1 NC_003197.1 probable regulatory protein; regulatory protein 1105460 1252530 STM1012 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_459987.1 1105050 R 99287 CDS NP_459988.1 16764373 1252531 1105785..1106159 1 NC_003197.1 probable regulatory protein; regulatory protein 1106159 1252531 STM1013 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_459988.1 1105785 D 99287 CDS NP_459989.1 16764374 1252532 1106244..1107227 1 NC_003197.1 probable replication protein; regulatory protein 1107227 1252532 STM1014 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_459989.1 1106244 D 99287 CDS NP_459990.1 16764375 1252533 1107230..1107979 1 NC_003197.1 acts to load the DnaB helicase onto the intiation site durning DNA replication; replication protein 1107979 1252533 STM1015 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 replication protein NP_459990.1 1107230 D 99287 CDS NP_459991.1 16764376 1252534 1107990..1108337 1 NC_003197.1 hypothetical protein 1108337 1252534 STM1016 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459991.1 1107990 D 99287 CDS NP_459992.1 16764377 1252535 1108334..1108645 1 NC_003197.1 hypothetical protein 1108645 1252535 STM1017 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459992.1 1108334 D 99287 CDS NP_459993.1 16764378 1252536 1108723..1109013 1 NC_003197.1 hypothetical protein 1109013 1252536 STM1018 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459993.1 1108723 D 99287 CDS NP_459994.1 16764379 1252537 1109305..1109538 1 NC_003197.1 hypothetical protein 1109538 1252537 STM1019 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459994.1 1109305 D 99287 CDS NP_459995.1 16764380 1252538 1109954..1110556 1 NC_003197.1 hypothetical protein 1110556 1252538 STM1020 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459995.1 1109954 D 99287 CDS NP_459996.1 16764381 1252539 1110765..1111376 1 NC_003197.1 hypothetical protein 1111376 1252539 STM1021 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459996.1 1110765 D 99287 CDS NP_951049.1 39980852 2673724 1111373..1111519 1 NC_003197.1 hypothetical protein 1111519 2673724 STM1021.1n Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_951049.1 1111373 D 99287 CDS NP_459997.1 16764382 1252540 1111509..1112306 1 NC_003197.1 DnaJ family; molecular chaperone 1112306 1252540 STM1022 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molecular chaperone NP_459997.1 1111509 D 99287 CDS NP_459998.1 16764383 1252541 1112373..1112690 1 NC_003197.1 hypothetical protein 1112690 1252541 STM1023 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459998.1 1112373 D 99287 CDS NP_459999.1 16764384 1252542 1112864..1112989 1 NC_003197.1 hypothetical protein 1112989 1252542 STM1024 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_459999.1 1112864 D 99287 CDS NP_460000.1 16764385 1252543 complement(1113125..1113574) 1 NC_003197.1 hypothetical protein 1113574 1252543 STM1025 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460000.1 1113125 R 99287 CDS NP_460001.1 16764386 1252544 complement(1113935..1114447) 1 NC_003197.1 hypothetical protein 1114447 1252544 STM1026 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460001.1 1113935 R 99287 CDS NP_460002.1 16764387 1252545 1114978..1115226 1 NC_003197.1 hypothetical protein 1115226 1252545 STM1027 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460002.1 1114978 D 99287 CDS NP_460003.1 16764388 1252546 1115210..1115662 1 NC_003197.1 lysozyme 1115662 1252546 STM1028 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lysozyme NP_460003.1 1115210 D 99287 CDS NP_460004.1 16764389 1252547 1115680..1116159 1 NC_003197.1 bacteriophage ES18 gp15 protein; hypothetical protein 1116159 1252547 STM1029 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460004.1 1115680 D 99287 CDS NP_460005.1 16764390 1252548 1116367..1116900 1 NC_003197.1 hypothetical protein 1116900 1252548 STM1030 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460005.1 1116367 D 99287 CDS NP_460006.1 16764391 1252549 1116857..1118995 1 NC_003197.1 hypothetical protein 1118995 1252549 STM1031 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460006.1 1116857 D 99287 CDS NP_460007.1 16764392 1252550 1119429..1120742 1 NC_003197.1 hypothetical protein 1120742 1252550 STM1032 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460007.1 1119429 D 99287 CDS NP_460008.1 16764393 1252551 1120666..1122747 1 NC_003197.1 Clp protease-like protein 1122747 1252551 STM1033 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Clp protease-like protein NP_460008.1 1120666 D 99287 CDS NP_460009.1 16764394 1252552 1122838..1123161 1 NC_003197.1 recombinase A 1123161 1252552 STM1034 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 recombinase A NP_460009.1 1122838 D 99287 CDS NP_460010.1 16764395 1252553 1123154..1123453 1 NC_003197.1 ATP-binding sugar transporter-like protein 1123453 1252553 STM1035 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-binding sugar transporter-like protein NP_460010.1 1123154 D 99287 CDS NP_460011.1 16764396 1252554 1123434..1124000 1 NC_003197.1 minor tail protein 1124000 1252554 STM1036 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor tail protein NP_460011.1 1123434 D 99287 CDS NP_460012.1 16764397 1252555 1123997..1124398 1 NC_003197.1 minor tail protein 1124398 1252555 STM1037 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor tail protein NP_460012.1 1123997 D 99287 CDS NP_460013.1 16764398 1252556 1124410..1125159 1 NC_003197.1 major tail protein 1125159 1252556 STM1038 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 major tail protein NP_460013.1 1124410 D 99287 CDS NP_460014.1 16764399 1252557 1125205..1125603 1 NC_003197.1 minor tail protein 1125603 1252557 STM1039 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor tail protein NP_460014.1 1125205 D 99287 CDS NP_460015.1 16764400 1252558 1125600..1125929 1 NC_003197.1 minor tail protein 1125929 1252558 STM1040 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor tail protein NP_460015.1 1125600 D 99287 CDS NP_460016.1 16764401 1252559 1126009..1128996 1 NC_003197.1 minor tail protein 1128996 1252559 STM1041 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor tail protein NP_460016.1 1126009 D 99287 CDS NP_460017.1 16764402 1252560 1128993..1129325 1 NC_003197.1 minor tail protein 1129325 1252560 STM1042 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor tail protein NP_460017.1 1128993 D 99287 CDS NP_460018.1 16764403 1252561 1129424..1129921 1 NC_003197.1 attachment/invasion protein 1129921 1252561 STM1043 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 attachment/invasion protein NP_460018.1 1129424 D 99287 CDS NP_460019.1 16764404 1252562 complement(1130053..1130586) 1 NC_003197.1 superoxide dismutase CuZn (SW:SODC_SALTY); important virulence function; implicated in defence against macrophage killing; superoxide dismutase 1130586 sodC 1252562 sodC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 superoxide dismutase NP_460019.1 1130053 R 99287 CDS NP_460020.1 16764405 1252563 1130676..1131371 1 NC_003197.1 minor tail protein 1131371 1252563 STM1045 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor tail protein NP_460020.1 1130676 D 99287 CDS NP_460021.1 16764406 1252564 1131381..1132118 1 NC_003197.1 tail assembly protein 1132118 1252564 STM1046 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tail assembly protein NP_460021.1 1131381 D 99287 CDS NP_460022.1 16764407 1252565 1132016..1132720 1 NC_003197.1 tail assembly protein 1132720 1252565 STM1047 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tail assembly protein NP_460022.1 1132016 D 99287 CDS NP_460023.1 16764408 1252566 1132792..1135239 1 NC_003197.1 host specificity protein J 1135239 1252566 STM1048 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 host specificity protein J NP_460023.1 1132792 D 99287 CDS NP_945160.1 39546309 2673720 1135266..1136141 1 NC_003197.1 hypothetical protein 1136141 2673720 STM1048.1N Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945160.1 1135266 D 99287 CDS YP_006892386.1 409994409 13865701 1136180..1136422 1 NC_003197.1 hypothetical protein 1136422 13865701 STM04985 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892386.1 1136180 D 99287 CDS NP_460024.1 16764409 1252567 1136476..1138914 1 NC_003197.1 tail fiber protein 1138914 1252567 STM1049 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tail fiber protein NP_460024.1 1136476 D 99287 CDS NP_460025.1 16764410 1252568 1138914..1139495 1 NC_003197.1 tail fiber assembly like-protein 1139495 1252568 STM1050 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tail fiber assembly like-protein NP_460025.1 1138914 D 99287 CDS NP_460026.1 16764411 1252569 1139971..1140939 1 NC_003197.1 required for maintaining a long-term systemic infection; secreted effector I; secreted by SPI-2; colocalizes with host polymerizing actin cytoskeleton; secreted effector protein SseI 1140939 sseI 1252569 sseI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secreted effector protein SseI NP_460026.1 1139971 D 99287 CDS NP_460027.1 16764412 1252571 complement(1141587..1142213) 1 NC_003197.1 hypothetical protein 1142213 1252571 STM1053 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460027.1 1141587 R 99287 CDS NP_460028.1 16764413 1252572 complement(1142282..1142581) 1 NC_003197.1 hypothetical protein 1142581 1252572 STM1054 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460028.1 1142282 R 99287 CDS NP_460029.1 16764414 1252573 complement(1142566..1143252) 1 NC_003197.1 hypothetical protein 1143252 1252573 STM1055 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460029.1 1142566 R 99287 CDS NP_460030.1 16764415 1252574 complement(1143523..1143714) 1 NC_003197.1 hypothetical protein 1143714 1252574 STM1056 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460030.1 1143523 R 99287 CDS NP_460031.1 16764416 1252575 1144141..1146753 1 NC_003197.1 aminopeptidase N 1146753 pepN 1252575 pepN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aminopeptidase N NP_460031.1 1144141 D 99287 CDS NP_460032.1 16764417 1252576 1146961..1147971 1 NC_003197.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1147971 pyrD 1252576 pyrD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dihydroorotate dehydrogenase 2 NP_460032.1 1146961 D 99287 CDS NP_460033.1 16764418 1252577 1148137..1148679 1 NC_003197.1 cell division protein ZapC 1148679 zapC 1252577 zapC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division protein ZapC NP_460033.1 1148137 D 99287 CDS NP_460034.1 16764419 1252578 complement(1148676..1149785) 1 NC_003197.1 iron-sulfur protein 1149785 1252578 STM1060 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 iron-sulfur protein NP_460034.1 1148676 R 99287 CDS NP_460035.1 16764420 1252579 1149884..1151992 1 NC_003197.1 RimK and RimL; catalyzes the N2-methyl guanosine modification of the G2445 residue and G2079 residue of 23S rRNA; bifunctional rRNA large subunit methyltransferase 1151992 rlmL 1252579 rlmL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional rRNA large subunit methyltransferase NP_460035.1 1149884 D 99287 CDS NP_460036.1 16764421 1252580 1152005..1153912 1 NC_003197.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1153912 uup 1252580 uup Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter ATPase NP_460036.1 1152005 D 99287 CDS NP_460037.1 16764422 1252581 1153927..1155180 1 NC_003197.1 paraquat-inducible protein A 1155180 pqiA 1252581 pqiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 paraquat-inducible protein A NP_460037.1 1153927 D 99287 CDS NP_460038.1 16764423 1252582 1155185..1156825 1 NC_003197.1 paraquat-inducible protein B 1156825 pqiB 1252582 pqiB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 paraquat-inducible protein B NP_460038.1 1155185 D 99287 CDS NP_460039.1 16764424 1252583 1156822..1157385 1 NC_003197.1 outer membrane protein 1157385 ymbA 1252583 ymbA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_460039.1 1156822 D 99287 CDS NP_460040.1 16764425 1252584 1157641..1157808 1 NC_003197.1 ribosome modulation factor 1157808 rmf 1252584 rmf Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribosome modulation factor NP_460040.1 1157641 D 99287 CDS NP_460041.1 16764426 1252585 complement(1157908..1158426) 1 NC_003197.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 1158426 fabA 1252585 fabA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-hydroxydecanoyl-ACP dehydratase NP_460041.1 1157908 R 99287 CDS NP_460042.1 16764427 1252586 complement(1158495..1160255) 1 NC_003197.1 protease 1160255 lonH 1252586 lonH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protease NP_460042.1 1158495 R 99287 CDS NP_460043.1 16764428 1252587 1160441..1160893 1 NC_003197.1 macrodomain Ter protein 1160893 ycbG 1252587 ycbG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 macrodomain Ter protein NP_460043.1 1160441 D 99287 CDS NP_460044.1 16764429 1252588 complement(1160965..1162017) 1 NC_003197.1 OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; outer membrane protein A 1162017 ompA 1252588 ompA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein A NP_460044.1 1160965 R 99287 CDS NP_460045.1 16764430 1252589 complement(1162374..1162883) 1 NC_003197.1 suppressor of lon (SW:SULA_SALTY); inhibitor of cell division and FtsZ ring formation upon DNA damage/inhibition; HslVU and Lon involved in its turnover; cell division inhibitor SulA 1162883 sulA 1252589 sulA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division inhibitor SulA NP_460045.1 1162374 R 99287 CDS NP_460046.1 16764431 1252590 1163100..1163705 1 NC_003197.1 DNA transformation protein 1163705 yccR 1252590 yccR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA transformation protein NP_460046.1 1163100 D 99287 CDS NP_460047.1 16764432 1252591 complement(1163692..1165845) 1 NC_003197.1 efflux PET family; efflux family transporter 1165845 yccS 1252591 yccS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 efflux family transporter NP_460047.1 1163692 R 99287 CDS NP_460048.1 16764433 1252592 complement(1165864..1166310) 1 NC_003197.1 inner membrane protein 1166310 yccF 1252592 yccF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460048.1 1165864 R 99287 CDS NP_460049.1 16764434 1252593 1166434..1168488 1 NC_003197.1 catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1168488 helD 1252593 helD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA helicase IV NP_460049.1 1166434 D 99287 CDS NP_460050.1 16764435 1252594 complement(1168524..1168982) 1 NC_003197.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1168982 mgsA 1252594 mgsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methylglyoxal synthase NP_460050.1 1168524 R 99287 CDS NP_460051.1 16764436 1252595 complement(1169077..1169739) 1 NC_003197.1 hypothetical protein 1169739 1252595 STM1077 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460051.1 1169077 R 99287 CDS NP_460052.1 16764437 1252596 1169910..1170326 1 NC_003197.1 cytoplasmic protein 1170326 1252596 STM1078 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460052.1 1169910 D 99287 CDS NP_460053.1 16764438 1252597 complement(1170371..1170688) 1 NC_003197.1 heat shock protein HspQ 1170688 yccV 1252597 yccV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 heat shock protein HspQ NP_460053.1 1170371 R 99287 CDS NP_460054.1 16764439 1252598 complement(1170746..1171957) 1 NC_003197.1 rRNA large subunit methyltransferase RimI 1171957 1252598 STM1080 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA large subunit methyltransferase RimI NP_460054.1 1170746 R 99287 CDS NP_460055.1 16764440 1252599 1172172..1172720 1 NC_003197.1 outer membrane protein 1172720 1252599 STM1081 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_460055.1 1172172 D 99287 CDS NP_460056.1 16764441 1252600 1172746..1173525 1 NC_003197.1 AraC family regulatory protein 1173525 1252600 STM1082 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AraC family regulatory protein NP_460056.1 1172746 D 99287 CDS NP_460057.1 16764442 1252601 1173574..1173855 1 NC_003197.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 1173855 yccX 1252601 yccX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acylphosphatase NP_460057.1 1173574 D 99287 CDS NP_460058.1 16764443 1252602 complement(1173852..1174181) 1 NC_003197.1 transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; sulfurtransferase TusE 1174181 yccK 1252602 yccK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfurtransferase TusE NP_460058.1 1173852 R 99287 CDS NP_460059.1 16764444 1252603 complement(1174268..1174927) 1 NC_003197.1 hypothetical protein 1174927 1252603 STM1085 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460059.1 1174268 R 99287 CDS NP_460060.1 16764445 1252605 complement(1175548..1176228) 1 NC_003197.1 pathogenicity island-encoded protein A 1176228 pipA 1252605 pipA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pathogenicity island-encoded protein A NP_460060.1 1175548 R 99287 CDS NP_460061.1 16764446 1252606 complement(1176450..1177325) 1 NC_003197.1 secreted effector protein PipB; similar to STM2780; secreted by SPI-2; type III secretion; localizes to Salmonella-containing vacuole and host cell membranes; pathogenicity island-encoded protein B 1177325 pipB 1252606 pipB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pathogenicity island-encoded protein B NP_460061.1 1176450 R 99287 CDS NP_460062.1 16764447 1252607 1177543..1177863 1 NC_003197.1 pathogenicity island-encoded protein 1177863 1252607 STM1089 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pathogenicity island-encoded protein NP_460062.1 1177543 D 99287 CDS NP_460063.1 16764448 1252608 complement(1177873..1178214) 1 NC_003197.1 chaperone protein SigE 1178214 sigE 1252608 sigE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone protein SigE NP_460063.1 1177873 R 99287 CDS NP_460064.1 16764449 1252609 complement(1178231..1179916) 1 NC_003197.1 SigD; Salmonella outer protein B; similar to ipgD of Shigella; invasion gene D protein; secreted by SPI-1; type III secretion; inositol phosphate phosphatase SopB 1179916 sopB 1252609 sopB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inositol phosphate phosphatase SopB NP_460064.1 1178231 R 99287 CDS NP_460065.1 16764450 1252610 1180248..1180418 1 NC_003197.1 pathogenicity island-encoded protein 1180418 orfX 1252610 orfX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pathogenicity island-encoded protein NP_460065.1 1180248 D 99287 CDS NP_460067.1 16764452 1252612 complement(1180638..1182107) 1 NC_003197.1 pathogenicity island-encoded protein D; dipeptidase 1182107 pipD 1252612 pipD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dipeptidase NP_460067.1 1180638 R 99287 CDS YP_009000616.1 576033374 1252613 complement(1182280..1183644) 1 NC_003197.1 copper resistance histidine kinase 1183644 copS 1252613 copS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 copper resistance histidine kinase YP_009000616.1 1182280 R 99287 CDS NP_460069.2 161353605 1252614 complement(1183637..1184317) 1 NC_003197.1 induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced; copper resistance transcriptional regulator 1184317 copR 1252614 copR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 copper resistance transcriptional regulator NP_460069.2 1183637 R 99287 CDS NP_460070.1 16764455 1252615 1184453..1184863 1 NC_003197.1 5-hydroxyisourate hydrolase 1184863 1252615 STM1097 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 5-hydroxyisourate hydrolase NP_460070.1 1184453 D 99287 CDS NP_460071.1 16764456 1252616 complement(1185196..1185708) 1 NC_003197.1 4-hydroxyphenylacetate 3-monooxygenase reductase subunit 1185708 hpaC 1252616 hpaC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-hydroxyphenylacetate 3-monooxygenase reductase subunit NP_460071.1 1185196 R 99287 CDS NP_460072.1 16764457 1252617 complement(1185726..1187288) 1 NC_003197.1 4-hydroxyphenylacetate 3-monooxygenase oxygenase subunit 1187288 hpaB 1252617 hpaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-hydroxyphenylacetate 3-monooxygenase oxygenase subunit NP_460072.1 1185726 R 99287 CDS NP_460073.1 16764458 1252618 complement(1187506..1187946) 1 NC_003197.1 4-hydroxyphenylacetate catabolism transcriptional regulator HpaR 1187946 hpaR 1252618 hpaR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-hydroxyphenylacetate catabolism transcriptional regulator HpaR NP_460073.1 1187506 R 99287 CDS NP_460074.1 16764459 1252619 1188221..1189510 1 NC_003197.1 4-hydroxyphenylacetate catabolism protein HpaG 1189510 hpaG 1252619 hpaG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-hydroxyphenylacetate catabolism protein HpaG NP_460074.1 1188221 D 99287 CDS NP_460075.1 16764460 1252620 1189507..1190973 1 NC_003197.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 1190973 hpaE 1252620 hpaE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase NP_460075.1 1189507 D 99287 CDS NP_460076.1 16764461 1252621 1190975..1191826 1 NC_003197.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1191826 hpaD 1252621 hpaD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3,4-dihydroxyphenylacetate 2,3-dioxygenase NP_460076.1 1190975 D 99287 CDS NP_460077.1 16764462 1252622 1191836..1192216 1 NC_003197.1 5-carboxymethyl-2-hydroxymuconate delta-isomerase 1192216 hpaF 1252622 hpaF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 5-carboxymethyl-2-hydroxymuconate delta-isomerase NP_460077.1 1191836 D 99287 CDS NP_460078.1 16764463 1252623 1192359..1193162 1 NC_003197.1 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1193162 hpaH 1252623 hpaH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-oxo-hepta-3-ene-1,7-dioic acid hydratase NP_460078.1 1192359 D 99287 CDS NP_460079.1 16764464 1252624 1193173..1193964 1 NC_003197.1 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase 1193964 hpaI 1252624 hpaI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase NP_460079.1 1193173 D 99287 CDS NP_460080.1 16764465 1252625 1194036..1195412 1 NC_003197.1 4-hydroxyphenylacetate permease 1195412 hpaX 1252625 hpaX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-hydroxyphenylacetate permease NP_460080.1 1194036 D 99287 CDS NP_460081.1 16764466 1252626 1195422..1196318 1 NC_003197.1 4-hydroxyphenylacetate catabolism transcriptional regulator HpaA 1196318 hpaA 1252626 hpaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-hydroxyphenylacetate catabolism transcriptional regulator HpaA NP_460081.1 1195422 D 99287 CDS NP_460082.1 16764467 1252627 1196332..1197270 1 NC_003197.1 periplasmic protein 1197270 1252627 STM1109 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460082.1 1196332 D 99287 CDS NP_460083.1 16764468 1252628 complement(1197678..1198040) 1 NC_003197.1 sigma S-regulator; RssC; anti-adapter protein IraM 1198040 1252628 STM1110 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anti-adapter protein IraM NP_460083.1 1197678 R 99287 CDS NP_460084.1 16764469 1252629 complement(1198694..1198999) 1 NC_003197.1 with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM 1198999 yccD 1252629 yccD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone-modulator protein CbpM NP_460084.1 1198694 R 99287 CDS NP_460085.1 16764470 1252630 complement(1198999..1199919) 1 NC_003197.1 functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock; curved DNA-binding protein CbpA 1199919 cbpA 1252630 cbpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 curved DNA-binding protein CbpA NP_460085.1 1198999 R 99287 CDS NP_460086.1 16764471 1252631 1200154..1200516 1 NC_003197.1 suppressor for copper-sensitivity A; copper binding protein; copper sensitive suppression protein A 1200516 scsA 1252631 scsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 copper sensitive suppression protein A NP_460086.1 1200154 D 99287 CDS NP_460087.1 16764472 1252632 1200565..1202451 1 NC_003197.1 suppressor for copper-sensitivity B; suppression of copper sensitivity; copper sensitive suppression protein 1202451 scsB 1252632 scsB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 copper sensitive suppression protein NP_460087.1 1200565 D 99287 CDS NP_460088.1 16764473 1252633 1202448..1203071 1 NC_003197.1 suppressor for copper-sensitivity C; suppression of copper sensitivity; copper sensitivity suppression protein 1203071 scsC 1252633 scsC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 copper sensitivity suppression protein NP_460088.1 1202448 D 99287 CDS NP_460089.1 16764474 1252634 1203061..1203567 1 NC_003197.1 suppressor for copper-sensitivity D; suppression of copper sensitivity; copper sensitive suppression protein 1203567 scsD 1252634 scsD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 copper sensitive suppression protein NP_460089.1 1203061 D 99287 CDS NP_460090.1 16764475 1252635 1203700..1204941 1 NC_003197.1 glucose-1-phosphatase/inositol phosphatase 1204941 agp 1252635 agp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucose-1-phosphatase/inositol phosphatase NP_460090.1 1203700 D 99287 CDS NP_460091.1 16764476 1252636 complement(1204975..1205202) 1 NC_003197.1 cytoplasmic protein 1205202 yccJ 1252636 yccJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460091.1 1204975 R 99287 CDS NP_460092.1 16764477 1252637 complement(1205223..1205819) 1 NC_003197.1 NAD(P)H dehydrogenase 1205819 1252637 STM1119 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NAD(P)H dehydrogenase NP_460092.1 1205223 R 99287 CDS NP_460093.1 16764478 1252639 1206204..1206371 1 NC_003197.1 cytoplasmic protein 1206371 ymdF 1252639 ymdF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460093.1 1206204 D 99287 CDS NP_460094.1 16764479 1252640 1206508..1207146 1 NC_003197.1 transcriptional repressor 1207146 ycdC 1252640 ycdC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional repressor NP_460094.1 1206508 D 99287 CDS NP_460095.1 16764480 1252641 complement(1207143..1207538) 1 NC_003197.1 periplasmic protein 1207538 1252641 STM1123 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460095.1 1207143 R 99287 CDS NP_460097.1 16764482 1252643 1211980..1213488 1 NC_003197.1 sodium/proline symporter proline permease (SW:PUTP_SALTY); SSS family; sodium/proline symporter 1213488 putP 1252643 putP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sodium/proline symporter NP_460097.1 1211980 D 99287 CDS YP_006892387.1 409994410 13865711 1214106..1214402 1 NC_003197.1 hypothetical protein 1214402 13865711 STM05010 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892387.1 1214106 D 99287 CDS YP_006892388.1 409994411 2673763 1214381..1215169 1 NC_003197.1 riboflavin biosynthesis protein 1215169 2673763 STM1126 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 riboflavin biosynthesis protein YP_006892388.1 1214381 D 99287 CDS NP_460099.1 16764484 1252645 complement(1215275..1216156) 1 NC_003197.1 transcriptional regulator 1216156 1252645 STM1127 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_460099.1 1215275 R 99287 CDS NP_460100.1 16764485 1252646 complement(1216441..1217937) 1 NC_003197.1 sodium/glucose cotransporter 1217937 1252646 STM1128 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sodium/glucose cotransporter NP_460100.1 1216441 R 99287 CDS NP_460101.1 16764486 1252647 complement(1218274..1218954) 1 NC_003197.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 1218954 1252647 STM1129 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-acetylmannosamine-6-phosphate 2-epimerase NP_460101.1 1218274 R 99287 CDS NP_460102.1 16764487 1252648 1219460..1220620 1 NC_003197.1 N-acetylneuraminate epimerase 1220620 1252648 STM1130 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-acetylneuraminate epimerase NP_460102.1 1219460 D 99287 CDS NP_460103.1 16764488 1252649 1220666..1221358 1 NC_003197.1 outer membrane protein 1221358 1252649 STM1131 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_460103.1 1220666 D 99287 CDS NP_460104.1 16764489 1252650 1221641..1222921 1 NC_003197.1 sugar transporter 1222921 1252650 STM1132 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar transporter NP_460104.1 1221641 D 99287 CDS NP_460105.1 16764490 1252651 1222932..1224038 1 NC_003197.1 dehydrogenase 1224038 1252651 STM1133 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dehydrogenase NP_460105.1 1222932 D 99287 CDS YP_006892389.1 409994412 13865727 complement(1224903..1225067) 1 NC_003197.1 hypothetical protein 1225067 13865727 STM05015 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892389.1 1224903 R 99287 CDS NP_460106.1 16764491 1252653 1225066..1226004 1 NC_003197.1 glyoxylate/hydroxypyruvate reductase A 1226004 ycdW 1252653 ycdW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glyoxylate/hydroxypyruvate reductase A NP_460106.1 1225066 D 99287 CDS NP_460107.1 16764492 1252654 1226088..1226825 1 NC_003197.1 phosphatase 1226825 ycdX 1252654 ycdX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphatase NP_460107.1 1226088 D 99287 CDS NP_460108.1 16764493 1252655 1226849..1227403 1 NC_003197.1 redox enzyme maturation protein 1227403 ycdY 1252655 ycdY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 redox enzyme maturation protein NP_460108.1 1226849 D 99287 CDS NP_460109.1 16764494 1252656 1227456..1227986 1 NC_003197.1 hypothetical protein in phoH-csgG intergenic region (SW:YCDZ_SALTY); inner membrane protein 1227986 ycdZ 1252656 ycdZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460109.1 1227456 D 99287 CDS NP_460110.1 16764495 1252657 complement(1228025..1228858) 1 NC_003197.1 curli production assembly/transport component CsgG (SW:CSGG_SALTY); curli production assembly/transport protein CsgG 1228858 csgG 1252657 csgG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 curli production assembly/transport protein CsgG NP_460110.1 1228025 R 99287 CDS NP_460111.1 16764496 1252658 complement(1228885..1229301) 1 NC_003197.1 nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli production assembly/transport protein CsgF 1229301 csgF 1252658 csgF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 curli production assembly/transport protein CsgF NP_460111.1 1228885 R 99287 CDS NP_460112.1 16764497 1252659 complement(1229328..1229723) 1 NC_003197.1 chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli production assembly/transport protein CsgE 1229723 csgE 1252659 csgE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 curli production assembly/transport protein CsgE NP_460112.1 1229328 R 99287 CDS NP_460113.1 16764498 1252660 complement(1229728..1230378) 1 NC_003197.1 activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD 1230378 csgD 1252660 csgD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional regulator CsgD NP_460113.1 1229728 R 99287 CDS NP_460114.1 16764499 1252661 1231133..1231588 1 NC_003197.1 CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; minor curlin subunit 1231588 csgB 1252661 csgB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor curlin subunit NP_460114.1 1231133 D 99287 CDS NP_460115.1 16764500 1252662 1231630..1232085 1 NC_003197.1 major curlin subunit precursor; fimbrin SEF17 (SW:CSGA_SALTY); coiled surface structures; cryptic; major curlin subunit 1232085 csgA 1252662 csgA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 major curlin subunit NP_460115.1 1231630 D 99287 CDS NP_460116.1 16764501 1252663 1232147..1232473 1 NC_003197.1 involved in autoagglutination of curliated cells; not involved in production of curli fibers; curli assembly protein CsgC 1232473 csgC 1252663 csgC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 curli assembly protein CsgC NP_460116.1 1232147 D 99287 CDS NP_460117.1 16764502 1252664 1232604..1232924 1 NC_003197.1 hypothetical protein in csgC-mdoG intergenic region (SW:YMDA_SALTY); hypothetical protein 1232924 1252664 STM1146 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460117.1 1232604 D 99287 CDS NP_460118.1 16764503 1252665 1233013..1233552 1 NC_003197.1 O-acetyl-ADP-ribose deacetylase 1233552 1252665 STM1147 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 O-acetyl-ADP-ribose deacetylase NP_460118.1 1233013 D 99287 CDS NP_460119.2 39546310 1252666 1233488..1234975 1 NC_003197.1 phospholipase 1234975 ymdC 1252666 ymdC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phospholipase NP_460119.2 1233488 D 99287 CDS NP_460120.1 16764505 1252667 complement(1234992..1236146) 1 NC_003197.1 required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein C 1236146 mdoC 1252667 mdoC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucans biosynthesis protein C NP_460120.1 1234992 R 99287 CDS NP_460121.1 16764506 1252668 1236418..1237953 1 NC_003197.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1237953 mdoG 1252668 mdoG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucan biosynthesis protein G NP_460121.1 1236418 D 99287 CDS NP_460122.1 16764507 1252669 1237946..1240489 1 NC_003197.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; gucans biosynthesis glucosyltransferase H 1240489 mdoH 1252669 mdoH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 gucans biosynthesis glucosyltransferase H NP_460122.1 1237946 D 99287 CDS NP_460123.1 16764508 1252670 1240563..1240790 1 NC_003197.1 outer membrane lipoprotein 1240790 yceK 1252670 yceK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_460123.1 1240563 D 99287 CDS NP_460124.1 16764509 1252671 complement(1240791..1241165) 1 NC_003197.1 secY/secA suppressor protein 1241165 msyB 1252671 msyB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secY/secA suppressor protein NP_460124.1 1240791 R 99287 CDS NP_460125.1 16764510 1252672 complement(1241247..1242461) 1 NC_003197.1 Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG 1242461 yceE 1252672 yceE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 drug efflux system protein MdtG NP_460125.1 1241247 R 99287 CDS NP_460126.1 16764511 1252673 complement(1242616..1243536) 1 NC_003197.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1243536 htrB 1252673 htrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipid A biosynthesis lauroyl acyltransferase NP_460126.1 1242616 R 99287 CDS NP_460127.1 16764512 1252674 1243756..1244808 1 NC_003197.1 hypothetical protein 1244808 1252674 STM1156 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460127.1 1243756 D 99287 CDS NP_460128.1 16764513 1252675 complement(1244860..1245435) 1 NC_003197.1 hypothetical protein 1245435 1252675 STM1157 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460128.1 1244860 R 99287 CDS NP_460129.1 16764514 1252676 complement(1245432..1246004) 1 NC_003197.1 inner membrane protein 1246004 1252676 STM1158 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460129.1 1245432 R 99287 CDS NP_460130.1 16764515 1252677 complement(1246267..1246380) 1 NC_003197.1 inner membrane protein 1246380 yceO 1252677 yceO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460130.1 1246267 R 99287 CDS NP_460131.1 16764516 1252678 complement(1246421..1247539) 1 NC_003197.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyl-L-tryptophan oxidase 1247539 solA 1252678 solA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-methyl-L-tryptophan oxidase NP_460131.1 1246421 R 99287 CDS NP_460132.3 161353564 1252679 complement(1247652..1247906) 1 NC_003197.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssS 1247906 bssS 1252679 bssS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 biofilm formation regulatory protein BssS NP_460132.3 1247652 R 99287 CDS NP_460133.1 16764518 1252680 complement(1248196..1248441) 1 NC_003197.1 DNA damage-inducible protein I 1248441 dinI 1252680 dinI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA damage-inducible protein I NP_460133.1 1248196 R 99287 CDS NP_460134.1 16764519 1252681 complement(1248515..1249561) 1 NC_003197.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1249561 pyrC 1252681 pyrC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dihydroorotase NP_460134.1 1248515 R 99287 CDS NP_460135.1 16764520 1252682 complement(1249666..1250226) 1 NC_003197.1 hypothetical protein in pyrC 3'region (SW:YCEB_SALTY); hypothetical protein 1250226 1252682 STM1164 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460135.1 1249666 R 99287 CDS NP_460136.1 16764521 1252683 complement(1250351..1250998) 1 NC_003197.1 cofactor involved in the reduction of disulfides; glutaredoxin 1250998 grxB 1252683 grxB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutaredoxin NP_460136.1 1250351 R 99287 CDS NP_460137.1 16764522 1252684 complement(1251062..1252270) 1 NC_003197.1 Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH 1252270 yceL 1252684 yceL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug resistance protein MdtH NP_460137.1 1251062 R 99287 CDS NP_460138.1 16764523 1252685 1252507..1253091 1 NC_003197.1 acetylates N-terminal alanine of 30S ribosomal subunit protein S5; ribosomal-protein-S5-alanine N-acetyltransferase 1253091 rimJ 1252685 rimJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribosomal-protein-S5-alanine N-acetyltransferase NP_460138.1 1252507 D 99287 CDS NP_460139.1 16764524 1252686 1253127..1253774 1 NC_003197.1 hypothetical protein 1253774 1252686 STM1168 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460139.1 1253127 D 99287 CDS NP_460140.1 16764525 1252687 1253776..1254699 1 NC_003197.1 oxidoreductase 1254699 1252687 STM1169 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_460140.1 1253776 D 99287 CDS NP_460141.1 16764526 1252688 1254964..1256538 1 NC_003197.1 involved in murein biosynthesis; peptidoglycan lipid II flippase 1256538 1252688 STM1170 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidoglycan lipid II flippase NP_460141.1 1254964 D 99287 CDS NP_460142.1 16764527 1252689 complement(1256619..1257041) 1 NC_003197.1 flagella synthesis protein FlgN (SW:FLGN_SALTY); FlgK/FlgL export chaperone 1257041 flgN 1252689 flgN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 FlgK/FlgL export chaperone NP_460142.1 1256619 R 99287 CDS NP_460143.1 16764528 1252690 complement(1257046..1257339) 1 NC_003197.1 regulates the flagellar specific sigma28 transcription factor; anti-sigma-28 factor FlgM 1257339 flgM 1252690 flgM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anti-sigma-28 factor FlgM NP_460143.1 1257046 R 99287 CDS NP_460144.1 16764529 1252691 complement(1257431..1258090) 1 NC_003197.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring formation protein FlgA 1258090 flgA 1252691 flgA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar basal body P-ring formation protein FlgA NP_460144.1 1257431 R 99287 CDS NP_460145.1 16764530 1252692 1258247..1258663 1 NC_003197.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1258663 flgB 1252692 flgB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar basal body rod protein FlgB NP_460145.1 1258247 D 99287 CDS NP_460146.1 16764531 1252693 1258667..1259071 1 NC_003197.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1259071 flgC 1252693 flgC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar basal body rod protein FlgC NP_460146.1 1258667 D 99287 CDS NP_460147.1 16764532 1252694 1259083..1259781 1 NC_003197.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein FlgD 1259781 flgD 1252694 flgD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar basal body rod modification protein FlgD NP_460147.1 1259083 D 99287 CDS NP_460148.1 16764533 1252695 1259808..1261019 1 NC_003197.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1261019 flgE 1252695 flgE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar hook protein FlgE NP_460148.1 1259808 D 99287 CDS NP_460149.1 16764534 1252696 1261040..1261795 1 NC_003197.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1261795 flgF 1252696 flgF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar basal body rod protein FlgF NP_460149.1 1261040 D 99287 CDS NP_460150.1 16764535 1252697 1261809..1262591 1 NC_003197.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1262591 flgG 1252697 flgG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar basal body rod protein FlgG NP_460150.1 1261809 D 99287 CDS NP_460151.1 16764536 1252698 1262646..1263344 1 NC_003197.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein FlgH 1263344 flgH 1252698 flgH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar basal body L-ring protein FlgH NP_460151.1 1262646 D 99287 CDS NP_460152.1 16764537 1252699 1263356..1264453 1 NC_003197.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein FlgI 1264453 flgI 1252699 flgI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar basal body P-ring protein FlgI NP_460152.1 1263356 D 99287 CDS NP_460153.1 16764538 1252700 1264453..1265403 1 NC_003197.1 flagellar rod assembly protein; Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; peptidoglycan hydrolase FlgJ 1265403 flgJ 1252700 flgJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidoglycan hydrolase FlgJ NP_460153.1 1264453 D 99287 CDS NP_460154.1 16764539 1252701 1265468..1267129 1 NC_003197.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1267129 flgK 1252701 flgK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar hook-associated protein FlgK NP_460154.1 1265468 D 99287 CDS NP_460155.1 16764540 1252702 1267144..1268097 1 NC_003197.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; flagellar hook-associated protein FlgL 1268097 flgL 1252702 flgL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar hook-associated protein FlgL NP_460155.1 1267144 D 99287 CDS NP_460156.1 16764541 1252703 complement(1268354..1271557) 1 NC_003197.1 bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; ribonuclease E 1271557 rne 1252703 rne Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonuclease E NP_460156.1 1268354 R 99287 CDS YP_006892390.1 409994413 13865729 1271693..1271941 1 NC_003197.1 hypothetical protein 1271941 13865729 STM05020 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892390.1 1271693 D 99287 CDS NP_460157.1 16764542 1252705 1272131..1273090 1 NC_003197.1 catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; rRNA lager subunit pseudouridylate synthase C 1273090 rluC 1252705 rluC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA lager subunit pseudouridylate synthase C NP_460157.1 1272131 D 99287 CDS NP_460158.1 16764543 1252706 1273246..1273989 1 NC_003197.1 inner membrane lipoprotein 1273989 1252706 STM1188 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane lipoprotein NP_460158.1 1273246 D 99287 CDS YP_006892391.1 409994414 13865704 1274195..1274419 1 NC_003197.1 hypothetical protein 1274419 13865704 STM05025 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892391.1 1274195 D 99287 CDS NP_460159.1 16764544 1252707 complement(1274491..1275075) 1 NC_003197.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1275075 maf 1252707 maf Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Maf-like protein NP_460159.1 1274491 R 99287 CDS NP_460160.1 16764545 1252708 1275273..1275794 1 NC_003197.1 hypothetical protein in rne-rpmF intergenic region (G30K) (SW:YCED_SALTY); hypothetical protein 1275794 1252708 STM1190 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460160.1 1275273 D 99287 CDS NP_460161.1 16764546 1252709 1275846..1276019 1 NC_003197.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1276019 rpmF 1252709 rpmF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L32 NP_460161.1 1275846 D 99287 CDS NP_460162.1 16764547 1252710 1276153..1277232 1 NC_003197.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; phosphate acyltransferase 1277232 plsX 1252710 plsX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphate acyltransferase NP_460162.1 1276153 D 99287 CDS NP_460163.1 16764548 1252711 1277312..1278265 1 NC_003197.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1278265 fabH 1252711 fabH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-oxoacyl-ACP synthase NP_460163.1 1277312 D 99287 CDS NP_460164.1 16764549 1252712 1278281..1279210 1 NC_003197.1 malonyl coA-acyl carrier protein transacylase (SW:FABD_SALTY); malonyl CoA-ACP transacylase 1279210 fabD 1252712 fabD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 malonyl CoA-ACP transacylase NP_460164.1 1278281 D 99287 CDS NP_460165.1 16764550 1252713 1279223..1279957 1 NC_003197.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-oxoacyl-ACP reductase FabG 1279957 fabG 1252713 fabG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-oxoacyl-ACP reductase FabG NP_460165.1 1279223 D 99287 CDS NP_460166.1 16764551 1252714 1280113..1280349 1 NC_003197.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1280349 acpP 1252714 acpP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acyl carrier protein NP_460166.1 1280113 D 99287 CDS NP_460167.1 16764552 1252715 1280435..1281676 1 NC_003197.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1281676 fabF 1252715 fabF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-oxoacyl-(acyl carrier protein) synthase II NP_460167.1 1280435 D 99287 CDS NP_460168.1 16764553 1252716 1281800..1282609 1 NC_003197.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1282609 pabC 1252716 pabC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-amino-4-deoxychorismate lyase NP_460168.1 1281800 D 99287 CDS NP_460169.1 16764554 1252717 1282612..1283634 1 NC_003197.1 septation protein 1283634 yceG 1252717 yceG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 septation protein NP_460169.1 1282612 D 99287 CDS NP_460170.1 16764555 1252718 1283624..1284265 1 NC_003197.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1284265 tmk 1252718 tmk Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thymidylate kinase NP_460170.1 1283624 D 99287 CDS NP_460171.1 16764556 1252719 1284262..1285266 1 NC_003197.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1285266 holB 1252719 holB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase III subunit delta' NP_460171.1 1284262 D 99287 CDS NP_460172.1 16764557 1252720 1285277..1286074 1 NC_003197.1 metallodependent hydrolase 1286074 ycfH 1252720 ycfH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 metallodependent hydrolase NP_460172.1 1285277 D 99287 CDS NP_460173.1 16764558 1252721 1286369..1287802 1 NC_003197.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunit IIBC 1287802 ptsG 1252721 ptsG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system glucose-specific transporter subunit IIBC NP_460173.1 1286369 D 99287 CDS NP_460174.1 16764559 1252722 complement(1287887..1290061) 1 NC_003197.1 ferric-rhodotorulic acid outer membrane transporter 1290061 fhuE 1252722 fhuE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferric-rhodotorulic acid outer membrane transporter NP_460174.1 1287887 R 99287 CDS NP_460175.1 16764560 1252723 1290403..1290762 1 NC_003197.1 purine nucleoside phosphoramidase 1290762 ycfF 1252723 ycfF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 purine nucleoside phosphoramidase NP_460175.1 1290403 D 99287 CDS NP_460176.1 16764561 1252724 1290765..1291139 1 NC_003197.1 outer membrane lipoprotein 1291139 ycfL 1252724 ycfL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_460176.1 1290765 D 99287 CDS NP_460177.1 16764562 1252725 1291153..1291791 1 NC_003197.1 penicillin-binding protein activator LpoB 1291791 lpoB 1252725 lpoB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 penicillin-binding protein activator LpoB NP_460177.1 1291153 D 99287 CDS NP_460178.1 16764563 1252726 1291772..1292596 1 NC_003197.1 catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 1292596 thiK 1252726 thiK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiamine kinase NP_460178.1 1291772 D 99287 CDS NP_460179.1 16764564 1252727 1292607..1293632 1 NC_003197.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1293632 nagZ 1252727 nagZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 beta-hexosaminidase NP_460179.1 1292607 D 99287 CDS NP_460180.1 16764565 1252728 1293657..1294199 1 NC_003197.1 hypothetical protein 1294199 1252728 STM1210 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460180.1 1293657 D 99287 CDS NP_460181.1 16764566 1252729 1294454..1295758 1 NC_003197.1 respiratory NADH dehydrogenase 2 1295758 ndh 1252729 ndh Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 respiratory NADH dehydrogenase 2 NP_460181.1 1294454 D 99287 CDS NP_460182.1 16764567 1252730 1295937..1296476 1 NC_003197.1 outer membrane lipoprotein 1296476 ycfJ 1252730 ycfJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_460182.1 1295937 D 99287 CDS NP_460183.1 16764568 1252731 complement(1296551..1297186) 1 NC_003197.1 TetR/AcrR family; transcriptional repressor 1297186 ycfQ 1252731 ycfQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional repressor NP_460183.1 1296551 R 99287 CDS NP_460184.1 16764569 1252732 1297428..1297685 1 NC_003197.1 outer membrane protein 1297685 ycfR 1252732 ycfR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_460184.1 1297428 D 99287 CDS NP_460185.1 16764570 1252733 complement(1297782..1298747) 1 NC_003197.1 periplasmic protein 1298747 ycfS 1252733 ycfS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460185.1 1297782 R 99287 CDS NP_460186.1 16764571 1252734 complement(1298895..1302341) 1 NC_003197.1 transcription-repair coupling factor 1302341 mfd 1252734 mfd Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcription-repair coupling factor NP_460186.1 1298895 R 99287 CDS NP_460187.2 39546312 1252735 1302679..1303878 1 NC_003197.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1303878 ycfU 1252735 ycfU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane-specific lipoprotein transporter subunit LolC NP_460187.2 1302679 D 99287 CDS NP_460188.1 16764573 1252736 1303871..1304572 1 NC_003197.1 outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone; lipoprotein-releasing system ATP-binding protein LolD 1304572 lolD 1252736 lolD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein-releasing system ATP-binding protein LolD NP_460188.1 1303871 D 99287 CDS NP_460189.1 16764574 1252737 1304572..1305816 1 NC_003197.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolD 1305816 1252737 STM1219 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane-specific lipoprotein transporter subunit LolD NP_460189.1 1304572 D 99287 CDS NP_460190.1 16764575 1252738 1305845..1306756 1 NC_003197.1 catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1306756 ycfX 1252738 ycfX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-acetyl-D-glucosamine kinase NP_460190.1 1305845 D 99287 CDS NP_460191.1 16764576 1252739 1306775..1307596 1 NC_003197.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1307596 cobB 1252739 cobB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NAD-dependent deacetylase NP_460191.1 1306775 D 99287 CDS NP_460192.1 16764577 1252740 complement(1307678..1308724) 1 NC_003197.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter substrate-binding protein PotD 1308724 potD 1252740 potD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 spermidine/putrescine ABC transporter substrate-binding protein PotD NP_460192.1 1307678 R 99287 CDS NP_460193.1 16764578 1252741 complement(1308749..1309528) 1 NC_003197.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter permease PotC 1309528 potC 1252741 potC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 spermidine/putrescine ABC transporter permease PotC NP_460193.1 1308749 R 99287 CDS NP_460194.1 16764579 1252742 complement(1309844..1310854) 1 NC_003197.1 translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isoprenoid addition of protein geranylgeranyl transferase I; also modified by S-acylation; secreted effector protein SifA 1310854 sifA 1252742 sifA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secreted effector protein SifA NP_460194.1 1309844 R 99287 CDS NP_460195.1 16764580 1252743 complement(1311183..1312046) 1 NC_003197.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein PotB 1312046 potB 1252743 potB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 spermidine/putrescine ABC transporter membrane protein PotB NP_460195.1 1311183 R 99287 CDS NP_460196.1 16764581 1252744 complement(1312030..1313166) 1 NC_003197.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATP-binding protein PotA 1313166 potA 1252744 potA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putrescine/spermidine ABC transporter ATP-binding protein PotA NP_460196.1 1312030 R 99287 CDS NP_460197.1 16764582 1252745 1313417..1314646 1 NC_003197.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1314646 pepT 1252745 pepT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidase T NP_460197.1 1313417 D 99287 CDS NP_460198.1 16764583 1252746 1314650..1315984 1 NC_003197.1 periplasmic protein 1315984 1252746 STM1228 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460198.1 1314650 D 99287 CDS NP_460199.1 16764584 1252747 complement(1316024..1317145) 1 NC_003197.1 cytoplasmic protein 1317145 ycfD 1252747 ycfD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460199.1 1316024 R 99287 CDS NP_460200.1 16764585 1252748 complement(1317226..1318689) 1 NC_003197.1 virulence sensor protein PhoQ (SW:PHOQ_SALTY); in two-component regulatory system with PhoP; ligand is Mg+; virulence sensor histidine kinase PhoQ 1318689 phoQ 1252748 phoQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 virulence sensor histidine kinase PhoQ NP_460200.1 1317226 R 99287 CDS NP_460201.1 16764586 1252749 complement(1318689..1319363) 1 NC_003197.1 response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; virulence transcriptional regulator PhoP 1319363 phoP 1252749 phoP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 virulence transcriptional regulator PhoP NP_460201.1 1318689 R 99287 CDS NP_460202.1 16764587 1252750 complement(1319487..1320857) 1 NC_003197.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1320857 purB 1252750 purB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 adenylosuccinate lyase NP_460202.1 1319487 R 99287 CDS NP_460203.1 16764588 1252751 complement(1320861..1321508) 1 NC_003197.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; high frequency lysogenization protein HflD 1321508 hflD 1252751 hflD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 high frequency lysogenization protein HflD NP_460203.1 1320861 R 99287 CDS NP_460204.2 39546313 1252752 complement(1321589..1322695) 1 NC_003197.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1322695 mnmA 1252752 mnmA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA-specific 2-thiouridylase MnmA NP_460204.2 1321589 R 99287 CDS NP_460205.1 16764590 1252753 complement(1322749..1323210) 1 NC_003197.1 phosphatase NudJ 1323210 ymfB 1252753 ymfB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphatase NudJ NP_460205.1 1322749 R 99287 CDS NP_460206.1 16764591 1252754 complement(1323222..1323551) 1 NC_003197.1 periplasmic protein 1323551 1252754 STM1236 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460206.1 1323222 R 99287 CDS NP_460207.1 16764592 1252755 complement(1323548..1324213) 1 NC_003197.1 rRNA large subunit pseudouridine synthase E 1324213 ymfC 1252755 ymfC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA large subunit pseudouridine synthase E NP_460207.1 1323548 R 99287 CDS NP_460208.1 16764593 1252756 1324385..1325635 1 NC_003197.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1325635 icdA 1252756 icdA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 isocitrate dehydrogenase NP_460208.1 1324385 D 99287 CDS NP_460209.1 16764594 1252757 1326083..1327207 1 NC_003197.1 cytoplasmic protein 1327207 1252757 STM1239 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460209.1 1326083 D 99287 CDS YP_006892392.1 409994415 13865706 complement(1327664..1327867) 1 NC_003197.1 hypothetical protein 1327867 13865706 STM05040 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892392.1 1327664 R 99287 CDS NP_460210.1 16764595 1252758 complement(1328189..1328977) 1 NC_003197.1 probable lipoprotein EnvF (SW:ENVF_SALTY); lipoprotein EnvF 1328977 envF 1252758 envF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein EnvF NP_460210.1 1328189 R 99287 CDS NP_460211.1 16764596 1252759 complement(1329466..1329705) 1 NC_003197.1 macrophage survival protein; reduced mouse virulence; virulence protein MsgA 1329705 msgA 1252759 msgA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 virulence protein MsgA NP_460211.1 1329466 R 99287 CDS NP_460212.1 16764597 1252760 complement(1329896..1330417) 1 NC_003197.1 probable lipoprotein EnvE (SW:ENVE_SALTY); lipoprotein EnvE 1330417 envE 1252760 envE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein EnvE NP_460212.1 1329896 R 99287 CDS NP_460213.1 16764598 1252761 complement(1330832..1331044) 1 NC_003197.1 cold shock-like protein CspH (SW:CSPH_SALTY); cold shock-like protein CspH 1331044 1252761 STM1243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cold shock-like protein CspH NP_460213.1 1330832 R 99287 CDS NP_460214.1 16764599 1252762 complement(1331176..1331439) 1 NC_003197.1 (SW:PAGD_SALTY); PhoP regulated protein; virulence protein PagD 1331439 pagD 1252762 pagD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 virulence protein PagD NP_460214.1 1331176 R 99287 CDS NP_460215.1 16764600 1252764 1332251..1332808 1 NC_003197.1 (SW:PAGC_SALTY); PhoP regulated; reduced macrophage survival; virulence membrane protein PagC 1332808 pagC 1252764 pagC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 virulence membrane protein PagC NP_460215.1 1332251 D 99287 CDS NP_460216.1 16764601 1252767 complement(1334045..1334389) 1 NC_003197.1 PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1334389 pliC 1252767 pliC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lysozyme inhibitor NP_460216.1 1334045 R 99287 CDS NP_460217.1 16764602 1252768 1335092..1335364 1 NC_003197.1 cytoplasmic protein 1335364 1252768 STM1250 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460217.1 1335092 D 99287 CDS NP_460218.1 16764603 1252769 1335516..1335983 1 NC_003197.1 molecular chaperone 1335983 1252769 STM1251 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molecular chaperone NP_460218.1 1335516 D 99287 CDS NP_460219.1 16764604 1252770 1336322..1337365 1 NC_003197.1 cytoplasmic protein 1337365 1252770 STM1252 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460219.1 1336322 D 99287 CDS NP_460220.1 16764605 1252771 complement(1337448..1337978) 1 NC_003197.1 cytochrome b561 1337978 1252771 STM1253 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome b561 NP_460220.1 1337448 R 99287 CDS NP_460221.1 16764606 1252772 complement(1338127..1338441) 1 NC_003197.1 outer membrane lipoprotein 1338441 1252772 STM1254 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_460221.1 1338127 R 99287 CDS NP_460222.1 16764607 1252773 1339123..1340757 1 NC_003197.1 substrate-binding protein; ABC transporter substrate-binding protein 1340757 1252773 STM1255 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter substrate-binding protein NP_460222.1 1339123 D 99287 CDS NP_460223.1 16764608 1252774 1340757..1341731 1 NC_003197.1 transmembrane protein; ABC transporter permease 1341731 1252774 STM1256 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter permease NP_460223.1 1340757 D 99287 CDS NP_460224.1 16764609 1252775 1341721..1342533 1 NC_003197.1 transmembrane protein; ABC transporter permease 1342533 1252775 STM1257 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter permease NP_460224.1 1341721 D 99287 CDS NP_460225.1 16764610 1252776 1342527..1343324 1 NC_003197.1 ATPase; contain duplicated ATPase domain; ABC transporter ATP-binding protein 1343324 1252776 STM1258 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter ATP-binding protein NP_460225.1 1342527 D 99287 CDS NP_460226.1 16764611 1252777 1343318..1343908 1 NC_003197.1 ATPase; contains duplicated ATPase domain; ABC transporter ATP-binding protein 1343908 1252777 STM1259 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter ATP-binding protein NP_460226.1 1343318 D 99287 CDS NP_460227.1 16764612 1252778 complement(1343990..1345123) 1 NC_003197.1 inner membrane protein 1345123 1252778 STM1260 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460227.1 1343990 R 99287 CDS NP_460228.1 16764613 1252779 1345317..1345643 1 NC_003197.1 cytoplasmic protein 1345643 1252779 STM1261 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460228.1 1345317 D 99287 CDS NP_460229.2 308065967 1252781 1345837..1346487 1 NC_003197.1 periplasmic protein 1346487 1252781 STM1263 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460229.2 1345837 D 99287 CDS NP_460230.1 16764615 1252782 1346596..1347384 1 NC_003197.1 streptomycin 3'-adenyltransferase; aminoglycoside adenyltransferase 1347384 aadA 1252782 aadA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aminoglycoside adenyltransferase NP_460230.1 1346596 D 99287 CDS NP_460231.1 16764616 1252783 1347529..1348122 1 NC_003197.1 contains CheY-like receiver domain and HTH DNA-binding domain; response regulator 1348122 1252783 STM1265 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 response regulator NP_460231.1 1347529 D 99287 CDS NP_460232.1 16764617 1252784 1348191..1349039 1 NC_003197.1 transcriptional regulator 1349039 1252784 STM1266 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_460232.1 1348191 D 99287 CDS NP_460233.1 16764618 1252785 complement(1349294..1349542) 1 NC_003197.1 cytoplasmic protein 1349542 1252785 STM1267 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460233.1 1349294 R 99287 CDS NP_460234.1 16764619 1252786 complement(1349621..1349770) 1 NC_003197.1 cytoplasmic protein 1349770 1252786 STM1268 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460234.1 1349621 R 99287 CDS NP_460235.1 16764620 1252787 1349853..1350398 1 NC_003197.1 catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1350398 1252787 STM1269 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chorismate mutase NP_460235.1 1349853 D 99287 CDS NP_460236.1 16764621 1252788 1350595..1351233 1 NC_003197.1 leucine efflux protein 1351233 yeaS 1252788 yeaS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 leucine efflux protein NP_460236.1 1350595 D 99287 CDS NP_460237.1 16764622 1252789 1351406..1351768 1 NC_003197.1 cytoplasmic protein 1351768 yeaR 1252789 yeaR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460237.1 1351406 D 99287 CDS NP_460238.1 16764623 1252790 1351771..1351953 1 NC_003197.1 cytoplasmic protein 1351953 yoaG 1252790 yoaG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460238.1 1351771 D 99287 CDS NP_460239.1 16764624 1252791 1352183..1352824 1 NC_003197.1 nitric oxide reductase 1352824 1252791 STM1273 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitric oxide reductase NP_460239.1 1352183 D 99287 CDS NP_951050.1 39980853 2673764 1352946..1353131 1 NC_003197.1 hypothetical protein 1353131 2673764 STM1273.1n Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_951050.1 1352946 D 99287 CDS NP_460240.1 16764625 1252792 1353139..1353387 1 NC_003197.1 inner membrane protein 1353387 yeaQ 1252792 yeaQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460240.1 1353139 D 99287 CDS NP_460241.1 16764626 1252793 1353820..1354071 1 NC_003197.1 hemolysin 1354071 yaoF 1252793 yaoF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hemolysin NP_460241.1 1353820 D 99287 CDS NP_460242.1 16764627 1252794 1354140..1354451 1 NC_003197.1 periplasmic protein 1354451 1252794 STM1276 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460242.1 1354140 D 99287 CDS NP_460243.1 16764628 1252795 complement(1354437..1354784) 1 NC_003197.1 cytoplasmic protein 1354784 yeaO 1252795 yeaO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460243.1 1354437 R 99287 CDS NP_460244.1 16764629 1252796 complement(1354903..1356087) 1 NC_003197.1 MFS family transport protein 1356087 yeaN 1252796 yeaN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family transport protein NP_460244.1 1354903 R 99287 CDS NP_460245.1 16764630 1252797 1356188..1356982 1 NC_003197.1 AraC/XylS family regulator 1356982 yeaM 1252797 yeaM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AraC/XylS family regulator NP_460245.1 1356188 D 99287 CDS NP_460246.1 16764631 1252798 complement(1357003..1357407) 1 NC_003197.1 membrane protein 1357407 yeaL 1252798 yeaL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane protein NP_460246.1 1357003 R 99287 CDS NP_460247.1 16764632 1252799 1357613..1357720 1 NC_003197.1 hypothetical protein 1357720 1252799 STM1281 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460247.1 1357613 D 99287 CDS NP_460248.1 16764633 1252800 complement(1357717..1358235) 1 NC_003197.1 cytoplasmic protein 1358235 yeaK 1252800 yeaK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460248.1 1357717 R 99287 CDS NP_460249.1 16764634 1252801 complement(1358285..1359778) 1 NC_003197.1 contains diguanylate cyclase/phosphodiesterase domain 1; methyl-accepting chemotaxis protein 1359778 yeaJ 1252801 yeaJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methyl-accepting chemotaxis protein NP_460249.1 1358285 R 99287 CDS NP_460250.1 16764635 1252802 complement(1360419..1361705) 1 NC_003197.1 hypothetical protein 1361705 1252802 STM1284 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460250.1 1360419 R 99287 CDS NP_460251.1 16764636 1252803 complement(1361828..1363762) 1 NC_003197.1 serine protein kinase 1363762 yeaG 1252803 yeaG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 serine protein kinase NP_460251.1 1361828 R 99287 CDS NP_460252.1 16764637 1252804 1364189..1364935 1 NC_003197.1 scaffolding protein for murein-synthesizing holoenzyme; murein-synthesizing holoenzymescaffolding protein 1364935 mipA 1252804 mipA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 murein-synthesizing holoenzymescaffolding protein NP_460252.1 1364189 D 99287 CDS NP_460253.1 16764638 1252805 1365225..1366421 1 NC_003197.1 arylsulfatase regulator 1366421 1252805 STM1287 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arylsulfatase regulator NP_460253.1 1365225 D 99287 CDS NP_460254.1 16764639 1252806 1366518..1367375 1 NC_003197.1 aldehyde reductase 1367375 1252806 STM1288 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aldehyde reductase NP_460254.1 1366518 D 99287 CDS NP_460255.1 16764640 1252807 complement(1367474..1368358) 1 NC_003197.1 aldose 1-epimerase-like protein 1368358 yeaD 1252807 yeaD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aldose 1-epimerase-like protein NP_460255.1 1367474 R 99287 CDS NP_460256.1 16764641 1252808 complement(1368693..1369688) 1 NC_003197.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 1369688 gapA 1252808 gapA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glyceraldehyde-3-phosphate dehydrogenase NP_460256.1 1368693 R 99287 CDS NP_460257.1 16764642 1252809 1370000..1370443 1 NC_003197.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; peptide methionine sulfoxide reductase MsrB 1370443 yeaA 1252809 yeaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptide methionine sulfoxide reductase MsrB NP_460257.1 1370000 D 99287 CDS NP_460258.1 16764643 1252810 1370485..1370763 1 NC_003197.1 cytoplasmic protein 1370763 yeaC 1252810 yeaC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460258.1 1370485 D 99287 CDS NP_460259.1 16764644 1252811 complement(1371115..1371771) 1 NC_003197.1 catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase 1371771 pncA 1252811 pncA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nicotinamidase/pyrazinamidase NP_460259.1 1371115 R 99287 CDS NP_460260.1 16764645 1252812 complement(1371798..1372814) 1 NC_003197.1 converts asparagine to aspartate and ammonia; asparaginase 1372814 ansA 1252812 ansA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 asparaginase NP_460260.1 1371798 R 99287 CDS NP_460261.1 16764646 1252813 complement(1372910..1374766) 1 NC_003197.1 SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 1374766 sppA 1252813 sppA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protease 4 NP_460261.1 1372910 R 99287 CDS NP_460262.1 16764647 1252814 1374940..1375491 1 NC_003197.1 oxidoreductase 1375491 ydjA 1252814 ydjA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_460262.1 1374940 D 99287 CDS NP_460263.1 16764648 1252815 1375609..1376652 1 NC_003197.1 catalyzes the formation of selenophosphate from selenide and ATP; selenide, water dikinase 1376652 selD 1252815 selD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 selenide, water dikinase NP_460263.1 1375609 D 99287 CDS NP_460264.1 16764649 1252816 1376657..1378606 1 NC_003197.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1378606 topB 1252816 topB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA topoisomerase III NP_460264.1 1376657 D 99287 CDS NP_460265.1 16764650 1252817 complement(1378636..1379979) 1 NC_003197.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1379979 gdhA 1252817 gdhA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamate dehydrogenase NP_460265.1 1378636 R 99287 CDS NP_460266.1 16764651 1252818 1380218..1380493 1 NC_003197.1 periplasmic protein 1380493 1252818 STM1300 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460266.1 1380218 D 99287 CDS NP_460267.1 16764652 1252819 complement(1380453..1380869) 1 NC_003197.1 Nudix hydrolase 1380869 1252819 STM1301 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Nudix hydrolase NP_460267.1 1380453 R 99287 CDS NP_460268.1 16764653 1252820 complement(1380942..1381748) 1 NC_003197.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 1381748 xthA 1252820 xthA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 exonuclease III NP_460268.1 1380942 R 99287 CDS NP_460269.1 16764654 1252821 1382194..1383420 1 NC_003197.1 catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; bifunctional succinylornithine transaminase/acetylornithine transaminase 1383420 argD 1252821 argD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional succinylornithine transaminase/acetylornithine transaminase NP_460269.1 1382194 D 99287 CDS NP_460270.1 16764655 1252822 1383411..1384445 1 NC_003197.1 arginine succinyltransferase 1384445 astA 1252822 astA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arginine succinyltransferase NP_460270.1 1383411 D 99287 CDS NP_460271.1 16764656 1252823 1384442..1385920 1 NC_003197.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; N-succinylglutamate 5-semialdehyde dehydrogenase 1385920 astD 1252823 astD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-succinylglutamate 5-semialdehyde dehydrogenase NP_460271.1 1384442 D 99287 CDS NP_460272.1 16764657 1252824 1385917..1387260 1 NC_003197.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 1387260 astB 1252824 astB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 succinylarginine dihydrolase NP_460272.1 1385917 D 99287 CDS NP_460273.1 16764658 1252825 1387253..1388221 1 NC_003197.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1388221 astE 1252825 astE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 succinylglutamate desuccinylase NP_460273.1 1387253 D 99287 CDS NP_460274.1 16764659 1252826 1388557..1389042 1 NC_003197.1 periplasmic protein induced by stress response via Cpx and BaeSR system; stress response protein 1389042 spy 1252826 spy Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 stress response protein NP_460274.1 1388557 D 99287 CDS NP_460275.1 16764660 1252827 complement(1389117..1390025) 1 NC_003197.1 3' incision activity; acts with UvrC; excinuclease 1390025 1252827 STM1309 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 excinuclease NP_460275.1 1389117 R 99287 CDS NP_460276.1 16764661 1252828 complement(1390119..1390946) 1 NC_003197.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NH(3)-dependent NAD synthetase 1390946 nadE 1252828 nadE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NH(3)-dependent NAD synthetase NP_460276.1 1390119 R 99287 CDS NP_460277.1 16764662 1252829 1391165..1391506 1 NC_003197.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator 1391506 1252829 STM1311 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional activator NP_460277.1 1391165 D 99287 CDS NP_460278.1 16764663 1252830 1391807..1392127 1 NC_003197.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 1392127 celA 1252830 celA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB NP_460278.1 1391807 D 99287 CDS NP_460279.1 16764664 1252831 1392210..1393568 1 NC_003197.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 1393568 celB 1252831 celB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC NP_460279.1 1392210 D 99287 CDS NP_460280.1 16764665 1252832 1393619..1393966 1 NC_003197.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 1393966 celC 1252832 celC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA NP_460280.1 1393619 D 99287 CDS NP_460281.1 16764666 1252833 1393977..1394819 1 NC_003197.1 represses the celABCDF-ydjC operon involved in carbon uptake; cel operon transcriptional repressor 1394819 celD 1252833 celD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cel operon transcriptional repressor NP_460281.1 1393977 D 99287 CDS NP_460282.1 16764667 1252834 1394944..1396299 1 NC_003197.1 phospho-beta-glucosidase 1396299 celF 1252834 celF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phospho-beta-glucosidase NP_460282.1 1394944 D 99287 CDS NP_460283.1 16764668 1252835 1396312..1397070 1 NC_003197.1 hypothetical protein 1397070 1252835 STM1317 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460283.1 1396312 D 99287 CDS NP_460284.1 16764669 1252836 complement(1397114..1399366) 1 NC_003197.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; catalase 1399366 katE 1252836 katE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 catalase NP_460284.1 1397114 R 99287 CDS NP_460285.1 16764670 1252837 1399731..1399973 1 NC_003197.1 affects inhibition after overreplication of chromosome in dnaAcos mutants; cell division activator CedA 1399973 cedA 1252837 cedA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division activator CedA NP_460285.1 1399731 D 99287 CDS NP_460286.1 16764671 1252838 complement(1400075..1401466) 1 NC_003197.1 kinase-like protein 1401466 ydjN 1252838 ydjN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 kinase-like protein NP_460286.1 1400075 R 99287 CDS NP_460287.2 161353604 1252839 complement(1401603..1402190) 1 NC_003197.1 LexA-regulated gene; LexA-regulated protein 1402190 ydjM 1252839 ydjM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LexA-regulated protein NP_460287.2 1401603 R 99287 CDS NP_460288.1 16764673 1252840 complement(1402340..1403008) 1 NC_003197.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 1403008 yniC 1252840 yniC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-deoxyglucose-6-phosphatase NP_460288.1 1402340 R 99287 CDS NP_460289.1 16764674 1252841 1403157..1403693 1 NC_003197.1 regulatory protein 1403693 yniB 1252841 yniB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_460289.1 1403157 D 99287 CDS NP_460290.1 16764675 1252842 complement(1403736..1404596) 1 NC_003197.1 cytoplasmic protein 1404596 1252842 STM1324 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460290.1 1403736 R 99287 CDS NP_460291.1 16764676 1252843 complement(1404703..1404993) 1 NC_003197.1 cytoplasmic protein 1404993 ydiZ 1252843 ydiZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460291.1 1404703 R 99287 CDS NP_460292.1 16764677 1252844 complement(1405090..1406022) 1 NC_003197.1 6-phosphofructokinase 1406022 pfkB 1252844 pfkB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 6-phosphofructokinase NP_460292.1 1405090 R 99287 CDS NP_460293.1 16764678 1252845 1406311..1407069 1 NC_003197.1 salt-inducible; outer membrane protein 1407069 ydiY 1252845 ydiY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_460293.1 1406311 D 99287 CDS NP_460294.1 16764679 1252846 complement(1407118..1408077) 1 NC_003197.1 outer membrane protein 1408077 1252846 STM1328 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_460294.1 1407118 R 99287 CDS NP_460295.1 16764680 1252847 1408220..1408534 1 NC_003197.1 inner membrane protein 1408534 1252847 STM1329 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460295.1 1408220 D 99287 CDS NP_460296.1 16764681 1252848 1408531..1409385 1 NC_003197.1 DNA/RNA non-specific endonuclease 1409385 1252848 STM1330 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA/RNA non-specific endonuclease NP_460296.1 1408531 D 99287 CDS NP_460298.1 16764683 1252850 complement(1410087..1411310) 1 NC_003197.1 O-antigen polymerase (SW:RFC_SALTY); O-antigen polymerase 1411310 rfc 1252850 rfc Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 O-antigen polymerase NP_460298.1 1410087 R 99287 CDS NP_460299.1 16764684 1252851 1412202..1414130 1 NC_003197.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonine--tRNA ligase 1414130 thrS 1252851 thrS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 threonine--tRNA ligase NP_460299.1 1412202 D 99287 CDS NP_460300.2 39546314 1252852 1414134..1414676 1 NC_003197.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1414676 infC 1252852 infC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 translation initiation factor IF-3 NP_460300.2 1414134 D 99287 CDS NP_460301.1 16764686 1252853 1414772..1414969 1 NC_003197.1 50S ribosomal protein L35 1414969 rpmI 1252853 rpmI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L35 NP_460301.1 1414772 D 99287 CDS NP_460302.1 16764687 1252854 1415020..1415376 1 NC_003197.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1415376 rplT 1252854 rplT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L20 NP_460302.1 1415020 D 99287 CDS NP_460303.1 16764688 1252855 1415678..1416661 1 NC_003197.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanine--tRNA ligase subunit alpha 1416661 pheS 1252855 pheS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phenylalanine--tRNA ligase subunit alpha NP_460303.1 1415678 D 99287 CDS NP_460304.1 16764689 1252856 1416677..1419064 1 NC_003197.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanine--tRNA ligase subunit beta 1419064 pheT 1252856 pheT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phenylalanine--tRNA ligase subunit beta NP_460304.1 1416677 D 99287 CDS NP_460305.1 16764690 1252857 1419069..1419368 1 NC_003197.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1419368 ihfA 1252857 ihfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integration host factor subunit alpha NP_460305.1 1419069 D 99287 CDS NP_460306.1 16764691 1252858 1419571..1420551 1 NC_003197.1 with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12 import system permease BtuC 1420551 btuC 1252858 btuC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 vtamin B12 import system permease BtuC NP_460306.1 1419571 D 99287 CDS NP_460307.1 16764692 1252859 1420643..1421194 1 NC_003197.1 glutathione peroxidase 1421194 btuE 1252859 btuE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione peroxidase NP_460307.1 1420643 D 99287 CDS NP_460308.1 16764693 1252860 1421194..1421943 1 NC_003197.1 ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12 import system ATP-binding protein BtuD 1421943 btuD 1252860 btuD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 vitamin B12 import system ATP-binding protein BtuD NP_460308.1 1421194 D 99287 CDS NP_460309.1 16764694 1252861 1422020..1422484 1 NC_003197.1 lipoprotein 1422484 nlpC 1252861 nlpC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein NP_460309.1 1422020 D 99287 CDS NP_460310.1 16764695 1252862 1422798..1423511 1 NC_003197.1 diguanylate cyclase/phosphodiesterase domain 1; anti-FlhC(2)FlhD(4) factor 1423511 ydiV 1252862 ydiV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anti-FlhC(2)FlhD(4) factor NP_460310.1 1422798 D 99287 CDS NP_460311.1 16764696 1252863 1423573..1425015 1 NC_003197.1 hypothetical protein 1425015 1252863 STM1345 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460311.1 1423573 D 99287 CDS NP_460312.1 16764697 1252864 complement(1425050..1425241) 1 NC_003197.1 cytoplasmic protein 1425241 ydiE 1252864 ydiE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460312.1 1425050 R 99287 CDS NP_460313.1 16764698 1252865 complement(1425398..1426444) 1 NC_003197.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 1426444 aroH 1252865 aroH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phospho-2-dehydro-3-deoxyheptonate aldolase NP_460313.1 1425398 R 99287 CDS NP_460314.1 16764699 1252866 complement(1426600..1427433) 1 NC_003197.1 phosphoenolpyruvate synthase regulatory protein 1427433 ydiA 1252866 ydiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoenolpyruvate synthase regulatory protein NP_460314.1 1426600 R 99287 CDS NP_460315.1 16764700 1252867 1427770..1430148 1 NC_003197.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1430148 pps 1252867 pps Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoenolpyruvate synthase NP_460315.1 1427770 D 99287 CDS NP_460316.1 16764701 1252868 complement(1430189..1431829) 1 NC_003197.1 acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase 1431829 ydiD 1252868 ydiD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 short chain acyl-CoA synthetase NP_460316.1 1430189 R 99287 CDS NP_460317.1 16764702 1252869 complement(1431919..1432212) 1 NC_003197.1 ferredoxin 1432212 ydiT 1252869 ydiT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferredoxin NP_460317.1 1431919 R 99287 CDS NP_460318.1 16764703 1252870 complement(1432209..1433495) 1 NC_003197.1 oxidoreductase 1433495 ydiS 1252870 ydiS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_460318.1 1432209 R 99287 CDS NP_460319.1 16764704 1252871 complement(1433552..1434487) 1 NC_003197.1 May play a role in a redox process; electron transfer flavoprotein 1434487 ydiR 1252871 ydiR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 electron transfer flavoprotein NP_460319.1 1433552 R 99287 CDS NP_460320.1 16764705 1252872 complement(1434509..1435273) 1 NC_003197.1 YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; electron transfer flavoprotein 1435273 ydiQ 1252872 ydiQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 electron transfer flavoprotein NP_460320.1 1434509 R 99287 CDS NP_460321.1 16764706 1252873 1435737..1436627 1 NC_003197.1 AraC family transcription regulator 1436627 ydiP 1252873 ydiP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AraC family transcription regulator NP_460321.1 1435737 D 99287 CDS NP_460322.1 16764707 1252874 complement(1436703..1437854) 1 NC_003197.1 may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; acyl-CoA dehydrogenase 1437854 ydiO 1252874 ydiO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acyl-CoA dehydrogenase NP_460322.1 1436703 R 99287 CDS NP_460323.2 39546315 1252875 complement(1437868..1439463) 1 NC_003197.1 acetyl-CoA/acetoacetyl-CoA transferase subunit beta 1439463 ydiF 1252875 ydiF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyl-CoA/acetoacetyl-CoA transferase subunit beta NP_460323.2 1437868 R 99287 CDS NP_460324.1 16764709 1252876 complement(1439617..1440375) 1 NC_003197.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 1440375 aroD 1252876 aroD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-dehydroquinate dehydratase NP_460324.1 1439617 R 99287 CDS NP_460325.1 16764710 1252877 complement(1440420..1441286) 1 NC_003197.1 YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; quinate/shikimate dehydrogenase 1441286 aroE 1252877 aroE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 quinate/shikimate dehydrogenase NP_460325.1 1440420 R 99287 CDS NP_460326.1 16764711 1252878 complement(1441353..1442588) 1 NC_003197.1 MFS family transport protein 1442588 ydiN 1252878 ydiN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family transport protein NP_460326.1 1441353 R 99287 CDS NP_460327.1 16764712 1252879 complement(1442952..1444163) 1 NC_003197.1 MFS family transport protein 1444163 ydiM 1252879 ydiM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family transport protein NP_460327.1 1442952 R 99287 CDS NP_460328.1 16764713 1252880 complement(1444304..1444663) 1 NC_003197.1 cytoplasmic protein 1444663 ydiL 1252880 ydiL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460328.1 1444304 R 99287 CDS NP_460329.1 16764714 1252882 complement(1445121..1446239) 1 NC_003197.1 YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; inner membrane protein 1446239 ydiK 1252882 ydiK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460329.1 1445121 R 99287 CDS NP_460330.1 16764715 1252883 1446504..1449560 1 NC_003197.1 oxidase 1449560 ydiJ 1252883 ydiJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidase NP_460330.1 1446504 D 99287 CDS NP_460331.1 16764716 1252884 1449557..1449967 1 NC_003197.1 possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein 1449967 1252884 STM1366 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460331.1 1449557 D 99287 CDS NP_460332.1 16764717 1252885 1450027..1450254 1 NC_003197.1 cytoplasmic protein 1450254 ydiH 1252885 ydiH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460332.1 1450027 D 99287 CDS NP_460333.1 16764718 1252886 complement(1450542..1451888) 1 NC_003197.1 Na+-dicarboxylate symporter 1451888 1252886 STM1368 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Na+-dicarboxylate symporter NP_460333.1 1450542 R 99287 CDS NP_460334.1 16764719 1252887 1452315..1452683 1 NC_003197.1 functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; iron-sulfur cluster assembly scaffold protein 1452683 sufA 1252887 sufA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 iron-sulfur cluster assembly scaffold protein NP_460334.1 1452315 D 99287 CDS NP_460335.1 16764720 1252888 1452692..1454179 1 NC_003197.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1454179 sufB 1252888 sufB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cysteine desulfurase activator complex subunit SufB NP_460335.1 1452692 D 99287 CDS NP_460336.1 16764721 1252889 1454196..1454942 1 NC_003197.1 part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase activator complex subunit ATPase SufC 1454942 sufC 1252889 sufC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cysteine desulfurase activator complex subunit ATPase SufC NP_460336.1 1454196 D 99287 CDS NP_460337.1 16764722 1252890 1454917..1456188 1 NC_003197.1 with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 1456188 sufD 1252890 sufD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cysteine desulfurase activator complex subunit SufD NP_460337.1 1454917 D 99287 CDS NP_460338.1 16764723 1252891 1456185..1457405 1 NC_003197.1 catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 1457405 sufS 1252891 sufS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional cysteine desulfurase/selenocysteine lyase NP_460338.1 1456185 D 99287 CDS NP_460339.1 16764724 1252892 1457418..1457834 1 NC_003197.1 Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1457834 ynhA 1252892 ynhA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cysteine desufuration protein SufE NP_460339.1 1457418 D 99287 CDS NP_460340.1 16764725 1252893 1457989..1458990 1 NC_003197.1 murein L,D-transpeptidase 1458990 ynhG 1252893 ynhG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 murein L,D-transpeptidase NP_460340.1 1457989 D 99287 CDS NP_460341.1 16764726 1252894 complement(1459057..1459296) 1 NC_003197.1 major outer membrane lipoprotein 1459296 lppB 1252894 lppB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 major outer membrane lipoprotein NP_460341.1 1459057 R 99287 CDS NP_460342.1 16764727 1252895 complement(1459379..1459615) 1 NC_003197.1 major outer membrane lipoprotein 1459615 lpp 1252895 lpp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 major outer membrane lipoprotein NP_460342.1 1459379 R 99287 CDS NP_460343.1 16764728 1252896 complement(1459926..1461338) 1 NC_003197.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1461338 pykF 1252896 pykF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate kinase NP_460343.1 1459926 R 99287 CDS NP_460344.1 16764729 1252897 complement(1461740..1463083) 1 NC_003197.1 amino acid permease 1463083 1252897 STM1379 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amino acid permease NP_460344.1 1461740 R 99287 CDS NP_460345.1 16764730 1252898 complement(1463105..1463998) 1 NC_003197.1 hydrolase or acyltransferase; hydrolase/acyltransferase 1463998 1252898 STM1380 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrolase/acyltransferase NP_460345.1 1463105 R 99287 CDS NP_460346.1 16764731 1252899 complement(1464057..1464794) 1 NC_003197.1 cytoplasmic protein 1464794 1252899 STM1381 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460346.1 1464057 R 99287 CDS NP_460347.1 16764732 1252900 complement(1464806..1466032) 1 NC_003197.1 DeoR family regulatory protein 1466032 1252900 STM1382 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DeoR family regulatory protein NP_460347.1 1464806 R 99287 CDS NP_460348.1 16764733 1252901 complement(1466355..1469417) 1 NC_003197.1 tetrathionate reductase subunit A; TtrA; tetrathionate reductase subunit A 1469417 ttrA 1252901 ttrA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tetrathionate reductase subunit A NP_460348.1 1466355 R 99287 CDS NP_460349.1 16764734 1252902 complement(1469410..1470432) 1 NC_003197.1 tetrathionate reductase subunit C; TtrC; tetrathionate reductase subunit C 1470432 ttrC 1252902 ttrC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tetrathionate reductase subunit C NP_460349.1 1469410 R 99287 CDS NP_460350.1 16764735 1252903 complement(1470433..1471185) 1 NC_003197.1 tetrathionate reductase subunit B; TtrB; tetrathionate reductase subunit B 1471185 ttrB 1252903 ttrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tetrathionate reductase subunit B NP_460350.1 1470433 R 99287 CDS NP_460351.1 16764736 1252904 1471349..1473127 1 NC_003197.1 tetrathionate reductase complex; TtrS; two-component regulatory system; tetrathionate sensor histidine kinase TtrS 1473127 ttrS 1252904 ttrS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tetrathionate sensor histidine kinase TtrS NP_460351.1 1471349 D 99287 CDS NP_460352.2 39546316 1252905 1473084..1473722 1 NC_003197.1 tetrathionate reductase complex; TtrR; two-component regulatory system; tetrathionate response regulator TtrR 1473722 ttrR 1252905 ttrR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tetrathionate response regulator TtrR NP_460352.2 1473084 D 99287 CDS NP_460353.1 16764738 1252906 1473820..1474032 1 NC_003197.1 hypothetical 7.9 kDa protein in ssrB-ttRr intergenic region (ORF70) (SW:YDHZ_SALTY); hypothetical protein 1474032 1252906 STM1388 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460353.1 1473820 D 99287 CDS NP_460354.1 16764739 1252907 complement(1474128..1475087) 1 NC_003197.1 inner membrane protein 1475087 1252907 STM1389 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460354.1 1474128 R 99287 CDS NP_460355.1 16764740 1252908 complement(1475260..1475988) 1 NC_003197.1 MerR family regulatory protein 1475988 1252908 STM1390 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MerR family regulatory protein NP_460355.1 1475260 R 99287 CDS NP_460356.1 16764741 1252909 complement(1476167..1476805) 1 NC_003197.1 secretion system transcriptonal activator SsrB 1476805 ssrB 1252909 ssrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system transcriptonal activator SsrB NP_460356.1 1476167 R 99287 CDS NP_460357.1 16764742 1252910 complement(1476836..1479598) 1 NC_003197.1 SpiR; type III secretion system regulator; regulated by OmpR-EnvZ; secretion system sensor kinase SsrA 1479598 ssrA 1252910 ssrA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system sensor kinase SsrA NP_460357.1 1476836 R 99287 CDS NP_460358.1 16764743 1252911 1479999..1480400 1 NC_003197.1 SpiC; effects secretion of other SPI-2 proteins; interacts with host cell TassC and Hook3 proteins; type III secretion; prevents fusion of endosome/lysosome with Salmonella-containing vacuoles; secretion system apparatus protein SsaB 1480400 ssaB 1252911 ssaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaB NP_460358.1 1479999 D 99287 CDS NP_460359.1 16764744 1252912 1480402..1481895 1 NC_003197.1 SpiA; type III secretion system apparatus; secretion system apparatus outer membrane protein SsaC 1481895 ssaC 1252912 ssaC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus outer membrane protein SsaC NP_460359.1 1480402 D 99287 CDS NP_460360.1 16764745 1252913 1481876..1483087 1 NC_003197.1 SpiB; type III secretion system; secretion system apparatus protein SsaD 1483087 ssaD 1252913 ssaD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaD NP_460360.1 1481876 D 99287 CDS NP_460361.1 16764746 1252914 1483095..1483337 1 NC_003197.1 secretory apparatus component; secretion system effector SsaE 1483337 ssaE 1252914 ssaE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system effector SsaE NP_460361.1 1483095 D 99287 CDS NP_460362.1 16764747 1252915 1483601..1483927 1 NC_003197.1 Salmonella typhimurium SseA; chaperones SseB/D; secretion system chaperone SseA 1483927 sseA 1252915 sseA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system chaperone SseA NP_460362.1 1483601 D 99287 CDS NP_460363.1 16764748 1252916 1483934..1484524 1 NC_003197.1 secreted protein; secreted effector protein SseB 1484524 sseB 1252916 sseB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secreted effector protein SseB NP_460363.1 1483934 D 99287 CDS NP_460364.1 16764749 1252917 1484521..1484994 1 NC_003197.1 secretion chaperone; secretion system chaperone SscA 1484994 sscA 1252917 sscA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system chaperone SscA NP_460364.1 1484521 D 99287 CDS NP_460365.1 16764750 1252918 1484997..1486451 1 NC_003197.1 SseC; secreted effector protein SseC 1486451 sseC 1252918 sseC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secreted effector protein SseC NP_460365.1 1484997 D 99287 CDS NP_460366.1 16764751 1252919 1486467..1487054 1 NC_003197.1 SseD; translocation machinery protein SseD 1487054 sseD 1252919 sseD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 translocation machinery protein SseD NP_460366.1 1486467 D 99287 CDS NP_460367.1 16764752 1252920 1487057..1487473 1 NC_003197.1 SseE; secretion system effector SseE 1487473 sseE 1252920 sseE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system effector SseE NP_460367.1 1487057 D 99287 CDS NP_460368.1 16764753 1252921 1487525..1487959 1 NC_003197.1 SscB; secretion system chaperone SscB 1487959 sscB 1252921 sscB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system chaperone SscB NP_460368.1 1487525 D 99287 CDS NP_460369.1 16764754 1252922 1487975..1488757 1 NC_003197.1 SseF; secretion system effector SseF 1488757 sseF 1252922 sseF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system effector SseF NP_460369.1 1487975 D 99287 CDS NP_460370.1 16764755 1252923 1488754..1489443 1 NC_003197.1 SseG; secretion system effector SseG 1489443 sseG 1252923 sseG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system effector SseG NP_460370.1 1488754 D 99287 CDS NP_460371.1 16764756 1252924 1489537..1489752 1 NC_003197.1 SsaH; secretion system apparatus protein SsaG 1489752 ssaG 1252924 ssaG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaG NP_460371.1 1489537 D 99287 CDS NP_460372.1 16764757 1252925 1489793..1490020 1 NC_003197.1 SsaH; secretion system apparatus protein SsaH 1490020 ssaH 1252925 ssaH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaH NP_460372.1 1489793 D 99287 CDS NP_460373.1 16764758 1252926 1490032..1490280 1 NC_003197.1 SsaI; secretion system apparatus protein SsaI 1490280 ssaI 1252926 ssaI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaI NP_460373.1 1490032 D 99287 CDS NP_460374.1 16764759 1252927 1490277..1491026 1 NC_003197.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus lipoprotein SsaJ 1491026 ssaJ 1252927 ssaJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus lipoprotein SsaJ NP_460374.1 1490277 D 99287 CDS NP_460375.1 16764760 1252928 1491044..1491592 1 NC_003197.1 cytoplasmic protein 1491592 1252928 STM1410 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460375.1 1491044 D 99287 CDS NP_460376.1 16764761 1252929 1491589..1492263 1 NC_003197.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaK 1492263 ssaK 1252929 ssaK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaK NP_460376.1 1491589 D 99287 CDS NP_460377.1 16764762 1252930 1492229..1493245 1 NC_003197.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaL 1493245 ssaL 1252930 ssaL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaL NP_460377.1 1492229 D 99287 CDS NP_460378.1 16764763 1252931 1493303..1493671 1 NC_003197.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaM 1493671 ssaM 1252931 ssaM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaM NP_460378.1 1493303 D 99287 CDS NP_460379.1 16764764 1252932 1493656..1495701 1 NC_003197.1 with SsaC forms part of a protein export system across the inner and outer cell membranes; member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaV 1495701 ssaV 1252932 ssaV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaV NP_460379.1 1493656 D 99287 CDS NP_460380.1 16764765 1252933 1495691..1496992 1 NC_003197.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus ATP synthase SsaN 1496992 ssaN 1252933 ssaN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus ATP synthase SsaN NP_460380.1 1495691 D 99287 CDS NP_460381.1 16764766 1252934 1496995..1497372 1 NC_003197.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaO 1497372 ssaO 1252934 ssaO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaO NP_460381.1 1496995 D 99287 CDS NP_460382.1 16764767 1252935 1497353..1497727 1 NC_003197.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaP 1497727 ssaP 1252935 ssaP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaP NP_460382.1 1497353 D 99287 CDS NP_460383.1 16764768 1252936 1497708..1498676 1 NC_003197.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaQ 1498676 ssaQ 1252936 ssaQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaQ NP_460383.1 1497708 D 99287 CDS NP_460384.1 16764769 1252937 1498744..1499391 1 NC_003197.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaR 1499391 ssaR 1252937 ssaR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaR NP_460384.1 1498744 D 99287 CDS NP_460385.1 16764770 1252938 1499388..1499654 1 NC_003197.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaS 1499654 ssaS 1252938 ssaS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaS NP_460385.1 1499388 D 99287 CDS NP_460386.1 16764771 1252939 1499655..1500434 1 NC_003197.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaT 1500434 ssaT 1252939 ssaT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaT NP_460386.1 1499655 D 99287 CDS NP_460387.1 16764772 1252940 1500431..1501489 1 NC_003197.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaU 1501489 ssaU 1252940 ssaU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system apparatus protein SsaU NP_460387.1 1500431 D 99287 CDS NP_460388.1 16764773 1252943 complement(1501962..1503335) 1 NC_003197.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug resistance protein MdtK 1503335 mdtK 1252943 mdtK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug resistance protein MdtK NP_460388.1 1501962 R 99287 CDS NP_460389.1 16764774 1252944 1503552..1504193 1 NC_003197.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1504193 ribE 1252944 ribE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 riboflavin synthase subunit alpha NP_460389.1 1503552 D 99287 CDS NP_460390.1 16764775 1252945 complement(1504235..1505383) 1 NC_003197.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase 1505383 cfa 1252945 cfa Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cyclopropane-fatty-acyl-phospholipid synthase NP_460390.1 1504235 R 99287 CDS NP_460391.1 16764776 1252946 complement(1505673..1506878) 1 NC_003197.1 uncharacterized member of the major facilitator superfamily (MFS); MFS family transport protein 1506878 ydhC 1252946 ydhC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family transport protein NP_460391.1 1505673 R 99287 CDS NP_460392.1 16764777 1252947 1506991..1507923 1 NC_003197.1 LysR family transcriptional regulator 1507923 ydhB 1252947 ydhB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_460392.1 1506991 D 99287 CDS NP_460393.1 16764778 1252948 complement(1507920..1508945) 1 NC_003197.1 binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; HTH-type transcriptional repressor PurR 1508945 purR 1252948 purR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional repressor PurR NP_460393.1 1507920 R 99287 CDS NP_460394.1 16764779 1252949 complement(1509413..1509994) 1 NC_003197.1 SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase 1509994 sodB 1252949 sodB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 superoxide dismutase NP_460394.1 1509413 R 99287 CDS NP_460395.1 16764780 1252950 complement(1510121..1510975) 1 NC_003197.1 cell wall-associated hydrolase 1510975 ydhO 1252950 ydhO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell wall-associated hydrolase NP_460395.1 1510121 R 99287 CDS NP_460396.1 16764781 1252951 1511277..1511624 1 NC_003197.1 glutaredoxin 1511624 ydhD 1252951 ydhD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutaredoxin NP_460396.1 1511277 D 99287 CDS NP_460397.1 16764782 1252952 complement(1511702..1512349) 1 NC_003197.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1512349 rnt 1252952 rnt Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonuclease T NP_460397.1 1511702 R 99287 CDS NP_460398.1 16764783 1252953 complement(1512450..1512857) 1 NC_003197.1 Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; lactoylglutathione lyase 1512857 gloA 1252953 gloA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lactoylglutathione lyase NP_460398.1 1512450 R 99287 CDS NP_460399.1 16764784 1252954 complement(1512926..1514023) 1 NC_003197.1 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 1514023 nemA 1252954 nemA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-ethylmaleimide reductase NP_460399.1 1512926 R 99287 CDS NP_460400.1 16764785 1252955 complement(1514082..1514681) 1 NC_003197.1 TetR/AcrR family; TetR/AcrR family transcriptional repressor 1514681 ydhM 1252955 ydhM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 TetR/AcrR family transcriptional repressor NP_460400.1 1514082 R 99287 CDS NP_460401.1 16764786 1252956 1514784..1515023 1 NC_003197.1 oxidoreductase 1515023 ydhL 1252956 ydhL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_460401.1 1514784 D 99287 CDS NP_460402.1 16764787 1252957 1515074..1515970 1 NC_003197.1 aldo/keto reductase 1515970 ydhF 1252957 ydhF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aldo/keto reductase NP_460402.1 1515074 D 99287 CDS NP_460403.1 16764788 1252958 1516050..1516571 1 NC_003197.1 SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1516571 sodC 1252958 sodC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 superoxide dismutase NP_460403.1 1516050 D 99287 CDS NP_460404.1 16764789 1252959 complement(1516547..1518586) 1 NC_003197.1 transporter 1518586 1252959 STM1441 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transporter NP_460404.1 1516547 R 99287 CDS NP_460405.1 16764790 1252960 complement(1518586..1519482) 1 NC_003197.1 multidrug resistance efflux pump 1519482 ydhJ 1252960 ydhJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug resistance efflux pump NP_460405.1 1518586 R 99287 CDS NP_460406.1 16764791 1252961 complement(1519449..1519685) 1 NC_003197.1 inner membrane protein 1519685 ydhI 1252961 ydhI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460406.1 1519449 R 99287 CDS NP_460407.2 161353603 1252962 1519886..1520320 1 NC_003197.1 Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1520320 slyA 1252962 slyA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator SlyA NP_460407.2 1519886 D 99287 CDS NP_460408.1 16764793 1252963 complement(1520368..1520835) 1 NC_003197.1 outer membrane lipoprotein SlyB (SW:SLYB_SALTY); outer membrane lipoprotein SlyB 1520835 slyB 1252963 slyB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein SlyB NP_460408.1 1520368 R 99287 CDS NP_460409.1 16764794 1252964 1521107..1522228 1 NC_003197.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1522228 anmK 1252964 anmK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anhydro-N-acetylmuramic acid kinase NP_460409.1 1521107 D 99287 CDS NP_460410.1 16764795 1252965 1522316..1522645 1 NC_003197.1 MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1522645 mliC 1252965 mliC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lysozyme inhibitor NP_460410.1 1522316 D 99287 CDS NP_460411.1 16764796 1252966 1522704..1523360 1 NC_003197.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1523360 pdxH 1252966 pdxH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyridoxamine 5'-phosphate oxidase NP_460411.1 1522704 D 99287 CDS NP_460412.1 16764797 1252967 1523487..1524761 1 NC_003197.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosine--tRNA ligase 1524761 tyrS 1252967 tyrS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tyrosine--tRNA ligase NP_460412.1 1523487 D 99287 CDS NP_460413.1 16764798 1252968 1524821..1525681 1 NC_003197.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1525681 pdxY 1252968 pdxY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyridoxamine kinase NP_460413.1 1524821 D 99287 CDS NP_460414.1 16764799 1252969 complement(1525740..1526345) 1 NC_003197.1 glutathionine S-transferase 1526345 gst 1252969 gst Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathionine S-transferase NP_460414.1 1525740 R 99287 CDS NP_460415.1 16764800 1252970 complement(1526450..1527955) 1 NC_003197.1 mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; dipeptide/tripeptide transporter permease A 1527955 tppB 1252970 tppB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dipeptide/tripeptide transporter permease A NP_460415.1 1526450 R 99287 CDS NP_460416.1 16764801 1252971 complement(1528557..1529192) 1 NC_003197.1 DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; endonuclease III 1529192 nth 1252971 nth Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 endonuclease III NP_460416.1 1528557 R 99287 CDS NP_460417.1 16764802 1252972 complement(1529192..1529884) 1 NC_003197.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 1529884 rsxE 1252972 rsxE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 electron transport complex protein RsxE NP_460417.1 1529192 R 99287 CDS NP_460418.1 16764803 1252973 complement(1529887..1530507) 1 NC_003197.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RsxG 1530507 rsxG 1252973 rsxG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 electron transport complex protein RsxG NP_460418.1 1529887 R 99287 CDS NP_460419.1 16764804 1252974 complement(1530511..1531569) 1 NC_003197.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RsxD 1531569 rsxD 1252974 rsxD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 electron transport complex protein RsxD NP_460419.1 1530511 R 99287 CDS NP_460420.1 16764805 1252975 complement(1531570..1533777) 1 NC_003197.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RsxC 1533777 rsxC 1252975 rsxC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 electron transport complex protein RsxC NP_460420.1 1531570 R 99287 CDS NP_460421.1 16764806 1252976 complement(1533770..1534348) 1 NC_003197.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RsxB 1534348 rsxB 1252976 rsxB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 electron transport complex protein RsxB NP_460421.1 1533770 R 99287 CDS NP_460422.1 16764807 1252977 complement(1534348..1534929) 1 NC_003197.1 inner membrane protein; electron transport complex protein RsxA 1534929 rsxA 1252977 rsxA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 electron transport complex protein RsxA NP_460422.1 1534348 R 99287 CDS NP_460423.1 16764808 1252978 complement(1535006..1535446) 1 NC_003197.1 inner membrane protein 1535446 ydgK 1252978 ydgK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460423.1 1535006 R 99287 CDS NP_460424.3 308065940 1252979 complement(1535535..1535750) 1 NC_003197.1 YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; oriC-binding nucleoid-associated protein 1535750 ydgT 1252979 ydgT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oriC-binding nucleoid-associated protein NP_460424.3 1535535 R 99287 CDS NP_460425.2 39546318 1252980 1536381..1537421 1 NC_003197.1 oxidoreductase 1537421 ydgJ 1252980 ydgJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_460425.2 1536381 D 99287 CDS NP_460426.1 16764811 1252981 complement(1537496..1538497) 1 NC_003197.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 1538497 add 1252981 add Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 adenosine deaminase NP_460426.1 1537496 R 99287 CDS NP_460427.1 16764812 1252984 complement(1539201..1540709) 1 NC_003197.1 periplasmic protein 1540709 ydgA 1252984 ydgA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460427.1 1539201 R 99287 CDS NP_460428.1 16764813 1252985 complement(1540812..1541987) 1 NC_003197.1 mannose-6-phosphate isomerase (SW:MANA_SALTY); mannose-6-phosphate isomerase 1541987 manA 1252985 manA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mannose-6-phosphate isomerase NP_460428.1 1540812 R 99287 CDS NP_460429.1 16764814 1252986 1542187..1543929 1 NC_003197.1 fumarate hydratase class I aerobic isozyme (SW:FUMA_SALTY); class I fumarate hydratase 1543929 fumA 1252986 fumA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 class I fumarate hydratase NP_460429.1 1542187 D 99287 CDS NP_460430.1 16764815 1252987 1544000..1545403 1 NC_003197.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; class II fumarate hydratase 1545403 fumC 1252987 fumC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 class II fumarate hydratase NP_460430.1 1544000 D 99287 CDS NP_460431.1 16764816 1252988 complement(1545400..1546329) 1 NC_003197.1 binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein 1546329 tus 1252988 tus Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA replication terminus site-binding protein NP_460431.1 1545400 R 99287 CDS NP_460432.1 16764817 1252989 complement(1546405..1547706) 1 NC_003197.1 sensory histidine kinase RstB 1547706 rstB 1252989 rstB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensory histidine kinase RstB NP_460432.1 1546405 R 99287 CDS NP_460433.1 16764818 1252990 complement(1547817..1549523) 1 NC_003197.1 periplasmic protein 1549523 1252990 STM1472 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460433.1 1547817 R 99287 CDS NP_460434.1 16764819 1252991 complement(1549676..1550809) 1 NC_003197.1 outer membrane protein N 1550809 ompN 1252991 ompN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein N NP_460434.1 1549676 R 99287 CDS NP_460435.1 16764820 1252993 complement(1551289..1552020) 1 NC_003197.1 response regulator in two-component regulatory system with RstB; response regulator RstA 1552020 rstA 1252993 rstA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 response regulator RstA NP_460435.1 1551289 R 99287 CDS NP_460436.1 16764821 1252994 1552147..1552482 1 NC_003197.1 inner membrane protein 1552482 ydgC 1252994 ydgC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460436.1 1552147 D 99287 CDS NP_460437.1 16764822 1252995 complement(1552544..1553926) 1 NC_003197.1 amino acid transporter 1553926 ydgI 1252995 ydgI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amino acid transporter NP_460437.1 1552544 R 99287 CDS NP_460438.1 16764823 1252996 complement(1554224..1555168) 1 NC_003197.1 periplasmic protein 1555168 ydgH 1252996 ydgH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460438.1 1554224 R 99287 CDS NP_460439.1 16764824 1252997 1555695..1557224 1 NC_003197.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1557224 pntA 1252997 pntA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NAD(P) transhydrogenase subunit alpha NP_460439.1 1555695 D 99287 CDS NP_460440.1 16764825 1252998 1557235..1558623 1 NC_003197.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; NAD(P) transhydrogenase subunit beta 1558623 pntB 1252998 pntB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NAD(P) transhydrogenase subunit beta NP_460440.1 1557235 D 99287 CDS NP_460441.1 16764826 1252999 complement(1558798..1559832) 1 NC_003197.1 transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; membrane transport protein 1559832 tqsA 1252999 tqsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane transport protein NP_460441.1 1558798 R 99287 CDS NP_460442.1 16764827 1253000 1560250..1560612 1 NC_003197.1 with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; spermidine export protein MdtJ 1560612 ydgF 1253000 ydgF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 spermidine export protein MdtJ NP_460442.1 1560250 D 99287 CDS NP_460443.1 16764828 1253001 1560599..1560928 1 NC_003197.1 with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; spermidine export protein MdtI 1560928 ydgE 1253001 ydgE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 spermidine export protein MdtI NP_460443.1 1560599 D 99287 CDS NP_460444.1 16764829 1253002 complement(1560968..1561789) 1 NC_003197.1 protease 1561789 1253002 STM1484 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protease NP_460444.1 1560968 R 99287 CDS NP_460445.2 161353602 1253003 complement(1562058..1562306) 1 NC_003197.1 required for growth and survival under moderately acid conditions; acid shock protein 1562306 1253003 STM1485 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acid shock protein NP_460445.2 1562058 R 99287 CDS NP_460446.1 16764831 1253004 complement(1562701..1563954) 1 NC_003197.1 MFS familty transport protein 1563954 ynfM 1253004 ynfM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS familty transport protein NP_460446.1 1562701 R 99287 CDS NP_460447.1 16764832 1253005 1564074..1564973 1 NC_003197.1 LysR family transcriptional regulator 1564973 ynfL 1253005 ynfL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_460447.1 1564074 D 99287 CDS NP_460448.1 16764833 1253006 1565101..1566321 1 NC_003197.1 pts operon transcriptional repressor 1566321 mlc 1253006 mlc Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pts operon transcriptional repressor NP_460448.1 1565101 D 99287 CDS NP_460449.1 16764834 1253007 1566447..1567142 1 NC_003197.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; ATP-dependent dithiobiotin synthetase BioD 1567142 bioD 1253007 bioD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent dithiobiotin synthetase BioD NP_460449.1 1566447 D 99287 CDS NP_460450.2 161353601 1253008 complement(1567098..1568351) 1 NC_003197.1 voltage-gated ClC-type chloride channel ClcB 1568351 1253008 STM1490 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 voltage-gated ClC-type chloride channel ClcB NP_460450.2 1567098 R 99287 CDS NP_460451.1 16764836 1253009 complement(1568523..1569671) 1 NC_003197.1 ABC transporter ATP-binding protein 1569671 1253009 STM1491 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter ATP-binding protein NP_460451.1 1568523 R 99287 CDS NP_460452.1 16764837 1253010 complement(1569671..1570318) 1 NC_003197.1 ABC transporter permease 1570318 1253010 STM1492 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter permease NP_460452.1 1569671 R 99287 CDS NP_460453.1 16764838 1253011 complement(1570328..1571230) 1 NC_003197.1 ABC transporter substrate-binding protein 1571230 1253011 STM1493 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter substrate-binding protein NP_460453.1 1570328 R 99287 CDS NP_460454.1 16764839 1253012 complement(1571259..1571969) 1 NC_003197.1 ABC transporter permease 1571969 1253012 STM1494 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter permease NP_460454.1 1571259 R 99287 CDS NP_460455.1 16764840 1253013 complement(1572274..1572888) 1 NC_003197.1 binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; Tat proofreading chaperone DmsD 1572888 ynfI 1253013 ynfI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Tat proofreading chaperone DmsD NP_460455.1 1572274 R 99287 CDS NP_460456.1 16764841 1253014 complement(1572931..1573788) 1 NC_003197.1 dimethylsulfoxide reductase subunit C 1573788 1253014 STM1496 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dimethylsulfoxide reductase subunit C NP_460456.1 1572931 R 99287 CDS NP_460457.1 16764842 1253015 complement(1573790..1574407) 1 NC_003197.1 dimethyl sulfoxide reductase subunit B 1574407 1253015 STM1497 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dimethyl sulfoxide reductase subunit B NP_460457.1 1573790 R 99287 CDS NP_460458.1 16764843 1253016 complement(1574418..1576853) 1 NC_003197.1 dimethyl sulfoxide reductase subunit A 1576853 1253016 STM1498 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dimethyl sulfoxide reductase subunit A NP_460458.1 1574418 R 99287 CDS NP_460459.1 16764844 1253017 complement(1576952..1579393) 1 NC_003197.1 dimethyl sulfoxide reductase subunit A 1579393 1253017 STM1499 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dimethyl sulfoxide reductase subunit A NP_460459.1 1576952 R 99287 CDS NP_460460.1 16764845 1253018 complement(1579547..1579855) 1 NC_003197.1 outer membrane protein 1579855 ynfD 1253018 ynfD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_460460.1 1579547 R 99287 CDS NP_460461.2 161353600 1253019 1579959..1580669 1 NC_003197.1 lipoprotein 1580669 ynfC 1253019 ynfC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein NP_460461.2 1579959 D 99287 CDS NP_460462.1 16764847 1253020 complement(1580710..1581270) 1 NC_003197.1 spermidine N1-acetyltransferase 1581270 speG 1253020 speG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 spermidine N1-acetyltransferase NP_460462.1 1580710 R 99287 CDS NP_460463.1 16764848 1253021 complement(1581306..1581647) 1 NC_003197.1 hypothetical protein 1581647 1253021 STM1503 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460463.1 1581306 R 99287 CDS NP_460464.1 16764849 1253022 1581800..1582126 1 NC_003197.1 membrane protein 1582126 ynfA 1253022 ynfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane protein NP_460464.1 1581800 D 99287 CDS NP_460465.1 16764850 1253023 1582248..1583462 1 NC_003197.1 tarvation sensing protein RpsA; bifunctional D-altronate/D-mannonate dehydratase 1583462 rspA 1253023 rspA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional D-altronate/D-mannonate dehydratase NP_460465.1 1582248 D 99287 CDS NP_460466.1 16764851 1253024 1583473..1584492 1 NC_003197.1 dehydrogenase 1584492 rspB 1253024 rspB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dehydrogenase NP_460466.1 1583473 D 99287 CDS NP_460468.1 16764853 1253026 1586069..1587535 1 NC_003197.1 mannitol dehydrogenase 1587535 ydfI 1253026 ydfI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mannitol dehydrogenase NP_460468.1 1586069 D 99287 CDS NP_460469.1 16764854 1253027 complement(1587602..1587805) 1 NC_003197.1 cytoplasmic protein 1587805 ydfZ 1253027 ydfZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460469.1 1587602 R 99287 CDS NP_460470.1 16764855 1253028 complement(1587986..1588672) 1 NC_003197.1 GntR family; GntR family regulatory protein 1588672 ydfH 1253028 ydfH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GntR family regulatory protein NP_460470.1 1587986 R 99287 CDS NP_460471.1 16764856 1253029 complement(1588802..1589548) 1 NC_003197.1 NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; L-serine/L-allo-threonine dehydrogenase 1589548 ydfG 1253029 ydfG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-serine/L-allo-threonine dehydrogenase NP_460471.1 1588802 R 99287 CDS NP_460472.1 16764857 1253030 1589687..1591729 1 NC_003197.1 peptidyl-dipeptidase DCP (SW:DCP_SALTY); peptidyl-dipeptidase 1591729 dcp 1253030 dcp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidyl-dipeptidase NP_460472.1 1589687 D 99287 CDS NP_460473.1 16764858 1253031 1592074..1592256 1 NC_003197.1 cytoplasmic protein 1592256 1253031 STM1513 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460473.1 1592074 D 99287 CDS NP_460474.1 16764859 1253032 complement(1592376..1592903) 1 NC_003197.1 competence damage-inducible protein A 1592903 ydeJ 1253032 ydeJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 competence damage-inducible protein A NP_460474.1 1592376 R 99287 CDS NP_460475.1 16764860 1253033 1593330..1593722 1 NC_003197.1 periplasmic protein 1593722 ydeI 1253033 ydeI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460475.1 1593330 D 99287 CDS NP_460476.1 16764861 1253034 complement(1594414..1595601) 1 NC_003197.1 YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; MFS family transport protein 1595601 ydeE 1253034 ydeE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family transport protein NP_460476.1 1594414 R 99287 CDS NP_460477.1 16764862 1253035 1595829..1596731 1 NC_003197.1 amino-acid metabolite efflux pump 1596731 ydeD 1253035 ydeD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amino-acid metabolite efflux pump NP_460477.1 1595829 D 99287 CDS NP_460478.1 16764863 1253036 complement(1596850..1597065) 1 NC_003197.1 multiple antibiotic resistance protein MarB 1597065 marB 1253036 marB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multiple antibiotic resistance protein MarB NP_460478.1 1596850 R 99287 CDS NP_460479.3 161353565 1253037 complement(1597094..1597477) 1 NC_003197.1 transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF; DNA-binding transcriptional activator MarA 1597477 marA 1253037 marA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional activator MarA NP_460479.3 1597094 R 99287 CDS NP_460480.1 16764865 1253038 complement(1597497..1597931) 1 NC_003197.1 Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR 1597931 marR 1253038 marR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional repressor MarR NP_460480.1 1597497 R 99287 CDS NP_460481.1 16764866 1253039 1598190..1598855 1 NC_003197.1 in E.coli K-12 this protein is not involved in antibiotic resistance; inner membrane protein MarC 1598855 marC 1253039 marC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein MarC NP_460481.1 1598190 D 99287 CDS NP_460482.1 16764867 1253040 complement(1598902..1600092) 1 NC_003197.1 sugar efflux transporter 1600092 ydeA 1253040 ydeA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar efflux transporter NP_460482.1 1598902 R 99287 CDS NP_460483.1 16764868 1253041 complement(1600208..1601080) 1 NC_003197.1 LysR family transcriptional regulator 1601080 yneJ 1253041 yneJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_460483.1 1600208 R 99287 CDS NP_460484.1 16764869 1253042 1601183..1602571 1 NC_003197.1 in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; succinate semialdehyde dehydrogenase 1602571 yneI 1253042 yneI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 succinate semialdehyde dehydrogenase NP_460484.1 1601183 D 99287 CDS NP_460485.1 16764870 1253043 1602644..1603570 1 NC_003197.1 catalyzes the formation of glutamate from glutamine; glutaminase 1603570 yneH 1253043 yneH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutaminase NP_460485.1 1602644 D 99287 CDS NP_460486.1 16764871 1253044 1603570..1603929 1 NC_003197.1 cytoplasmic protein 1603929 yneG 1253044 yneG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460486.1 1603570 D 99287 CDS NP_460487.1 16764872 1253045 1604153..1605100 1 NC_003197.1 hypothetical protein 1605100 1253045 STM1527 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460487.1 1604153 D 99287 CDS NP_460488.1 16764873 1253046 complement(1605156..1605698) 1 NC_003197.1 outer membrane protein 1605698 1253046 STM1528 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_460488.1 1605156 R 99287 CDS NP_460490.1 16764875 1253048 1606415..1607533 1 NC_003197.1 outer membrane protein 1607533 1253048 STM1530 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_460490.1 1606415 D 99287 CDS NP_460491.1 16764876 1253049 complement(1607674..1608015) 1 NC_003197.1 hydrogenase nickel incorporation protein HypA 1608015 1253049 STM1531 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase nickel incorporation protein HypA NP_460491.1 1607674 R 99287 CDS NP_460492.1 16764877 1253050 complement(1608028..1608915) 1 NC_003197.1 dehydrogenase protein 1608915 1253050 STM1532 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dehydrogenase protein NP_460492.1 1608028 R 99287 CDS NP_460493.1 16764878 1253051 complement(1608903..1609964) 1 NC_003197.1 hydrogenase 1609964 1253051 STM1533 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase NP_460493.1 1608903 R 99287 CDS NP_460494.1 16764879 1253052 complement(1609982..1610392) 1 NC_003197.1 hydrogenase expression/formation protein 1610392 1253052 STM1534 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase expression/formation protein NP_460494.1 1609982 R 99287 CDS NP_460495.1 16764880 1253053 complement(1610389..1610688) 1 NC_003197.1 hydrogenase protein 1610688 1253053 STM1535 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase protein NP_460495.1 1610389 R 99287 CDS NP_460496.1 16764881 1253054 complement(1610688..1611296) 1 NC_003197.1 processing of HyaA and HyaB proteins; hydrogenase maturation protease 1611296 1253054 STM1536 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase maturation protease NP_460496.1 1610688 R 99287 CDS NP_460497.1 16764882 1253055 complement(1611302..1612045) 1 NC_003197.1 Ni/Fe hydrogenase 1 b-type cytochrome subunit 1612045 1253055 STM1537 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Ni/Fe hydrogenase 1 b-type cytochrome subunit NP_460497.1 1611302 R 99287 CDS NP_460498.1 16764883 1253056 complement(1611996..1613798) 1 NC_003197.1 hydrogenase-1 large subunit 1613798 1253056 STM1538 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase-1 large subunit NP_460498.1 1611996 R 99287 CDS NP_460499.1 16764884 1253057 complement(1613801..1614904) 1 NC_003197.1 hydrogenase-1 small subunit 1614904 1253057 STM1539 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase-1 small subunit NP_460499.1 1613801 R 99287 CDS NP_460500.1 16764885 1253058 1615333..1616424 1 NC_003197.1 hydrolase 1616424 1253058 STM1540 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrolase NP_460500.1 1615333 D 99287 CDS NP_460501.1 16764886 1253059 1616470..1617261 1 NC_003197.1 GntR family regulatory protein 1617261 1253059 STM1541 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GntR family regulatory protein NP_460501.1 1616470 D 99287 CDS NP_460502.1 16764887 1253060 complement(1617320..1618345) 1 NC_003197.1 zinc-binding dehydrogenase 1618345 1253060 STM1542 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 zinc-binding dehydrogenase NP_460502.1 1617320 R 99287 CDS NP_460503.1 16764888 1253061 complement(1618320..1619606) 1 NC_003197.1 transporter 1619606 1253061 STM1543 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transporter NP_460503.1 1618320 R 99287 CDS NP_460504.1 16764889 1253062 complement(1619783..1621339) 1 NC_003197.1 PhoPQ-regulated protein 1621339 pqaA 1253062 pqaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PhoPQ-regulated protein NP_460504.1 1619783 R 99287 CDS NP_460505.1 16764890 1253063 complement(1621409..1622650) 1 NC_003197.1 multidrug efflux protein 1622650 1253063 STM1545 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug efflux protein NP_460505.1 1621409 R 99287 CDS NP_460506.1 16764891 1253064 complement(1622640..1624148) 1 NC_003197.1 hypothetical protein 1624148 1253064 STM1546 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460506.1 1622640 R 99287 CDS NP_460507.1 16764892 1253065 1624193..1624681 1 NC_003197.1 marR-family; MarR family transcriptional regulator 1624681 1253065 STM1547 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MarR family transcriptional regulator NP_460507.1 1624193 D 99287 CDS NP_460508.2 39546320 1253066 1624874..1625953 1 NC_003197.1 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 1625953 1253066 STM1548.s Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase NP_460508.2 1624874 D 99287 CDS NP_460509.1 16764894 1253067 complement(1626005..1626394) 1 NC_003197.1 translation initiation inhibitor 1626394 1253067 STM1549 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 translation initiation inhibitor NP_460509.1 1626005 R 99287 CDS NP_460510.1 16764895 1253068 complement(1626565..1626849) 1 NC_003197.1 cytoplasmic protein 1626849 1253068 STM1550 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460510.1 1626565 R 99287 CDS NP_460511.1 16764896 1253069 complement(1626839..1627087) 1 NC_003197.1 cytoplasmic protein 1627087 1253069 STM1551 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460511.1 1626839 R 99287 CDS NP_945161.1 39546321 2673754 1627444..1627776 1 NC_003197.1 hypothetical protein 1627776 2673754 STM1551.1n Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945161.1 1627444 D 99287 CDS NP_460512.1 16764897 1253070 1627919..1628827 1 NC_003197.1 cytoplasmic protein 1628827 1253070 STM1552 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460512.1 1627919 D 99287 CDS YP_006892393.1 409994416 13865722 complement(1629926..1630135) 1 NC_003197.1 hypothetical protein 1630135 13865722 STM05155 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892393.1 1629926 R 99287 CDS NP_460513.1 16764898 1253072 complement(1630405..1631871) 1 NC_003197.1 coiled-coil protein 1631871 1253072 STM1554 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 coiled-coil protein NP_460513.1 1630405 R 99287 CDS NP_460514.1 16764899 1253073 1632130..1633137 1 NC_003197.1 transcriptional regulator 1633137 1253073 STM1555 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_460514.1 1632130 D 99287 CDS NP_460515.1 16764900 1253074 1633281..1634732 1 NC_003197.1 Na+/H+ antiporter 1634732 1253074 STM1556 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Na+/H+ antiporter NP_460515.1 1633281 D 99287 CDS NP_460516.1 16764901 1253075 1634745..1635947 1 NC_003197.1 aminotransferase 1635947 1253075 STM1557 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aminotransferase NP_460516.1 1634745 D 99287 CDS NP_460517.1 16764902 1253076 complement(1636060..1638135) 1 NC_003197.1 glycosyl hydrolase 1638135 1253076 STM1558 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyl hydrolase NP_460517.1 1636060 R 99287 CDS NP_460518.1 16764903 1253077 complement(1638192..1640720) 1 NC_003197.1 glycosyl hydrolase 1640720 1253077 STM1559 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyl hydrolase NP_460518.1 1638192 R 99287 CDS NP_460519.1 16764904 1253078 complement(1640717..1642501) 1 NC_003197.1 malto-oligosyltrehalose trehalohydrolase 1642501 1253078 STM1560 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 malto-oligosyltrehalose trehalohydrolase NP_460519.1 1640717 R 99287 CDS NP_460520.1 16764905 1253079 complement(1642630..1643415) 1 NC_003197.1 outer membrane or secreted; lipoprotein 1643415 1253079 STM1561 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein NP_460520.1 1642630 R 99287 CDS NP_460521.1 16764906 1253080 complement(1643558..1643887) 1 NC_003197.1 acid stress chaperone HdeB 1643887 hdeB 1253080 hdeB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acid stress chaperone HdeB NP_460521.1 1643558 R 99287 CDS NP_460522.1 16764907 1253081 complement(1644237..1644668) 1 NC_003197.1 peroxiredoxin OsmC 1644668 osmC 1253081 osmC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peroxiredoxin OsmC NP_460522.1 1644237 R 99287 CDS NP_460523.1 16764908 1253082 1645181..1645396 1 NC_003197.1 biofilm-dependent modulation protein 1645396 yddX 1253082 yddX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 biofilm-dependent modulation protein NP_460523.1 1645181 D 99287 CDS NP_460524.1 16764909 1253083 1645491..1645634 1 NC_003197.1 protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; 30S ribosomal subunit S22 1645634 rpsV 1253083 rpsV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal subunit S22 NP_460524.1 1645491 D 99287 CDS NP_460525.1 16764910 1253084 1645811..1647508 1 NC_003197.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1647508 sfcA 1253084 sfcA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 malate dehydrogenase NP_460525.1 1645811 D 99287 CDS NP_460526.1 16764911 1253085 1647794..1648804 1 NC_003197.1 alcohol dehydrogenase 1648804 adhP 1253085 adhP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alcohol dehydrogenase NP_460526.1 1647794 D 99287 CDS NP_460527.1 16764912 1253086 complement(1648895..1649551) 1 NC_003197.1 nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase; formate dehydrogenase-N cytochrome B556 subunit gamma 1649551 fdnI 1253086 fdnI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate dehydrogenase-N cytochrome B556 subunit gamma NP_460527.1 1648895 R 99287 CDS NP_460528.1 16764913 1253087 complement(1649544..1650428) 1 NC_003197.1 formate dehydrogenase-N, Fe-S subunit beta 1650428 fdnH 1253087 fdnH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate dehydrogenase-N, Fe-S subunit beta NP_460528.1 1649544 R 99287 CDS NP_460529.1 16764914 1253088 complement(1650442..1653489) 1 NC_003197.1 molybdopterin oxidoreductases 1653489 fdnG 1253088 fdnG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molybdopterin oxidoreductases NP_460529.1 1650442 R 99287 CDS NP_460530.2 161353599 1253089 1653767..1654648 1 NC_003197.1 permease 1654648 yddG 1253089 yddG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_460530.2 1653767 D 99287 CDS NP_460531.1 16764916 1253090 1655173..1656261 1 NC_003197.1 outer membrane porin protein OmpD 1656261 ompD 1253090 ompD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane porin protein OmpD NP_460531.1 1655173 D 99287 CDS NP_460532.2 39546322 1253091 1656345..1656785 1 NC_003197.1 hypothetical protein 1656785 1253091 STM1573.Sc Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460532.2 1656345 D 99287 CDS NP_460533.1 16764918 1253092 complement(1656810..1658297) 1 NC_003197.1 methyl viologen resistance protein SmvA (SW:SMVA_SALTY); methyl viologen resistance protein SmvA 1658297 smvA 1253092 smvA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methyl viologen resistance protein SmvA NP_460533.1 1656810 R 99287 CDS NP_460534.1 16764919 1253093 1658415..1658993 1 NC_003197.1 TetR family; TetR family transcription regulator 1658993 1253093 STM1575 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 TetR family transcription regulator NP_460534.1 1658415 D 99287 CDS NP_460535.1 16764920 1253094 1659208..1660596 1 NC_003197.1 MFS superfamily; nitrate/nitrite transporter NarU 1660596 narU 1253094 narU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrate/nitrite transporter NarU NP_460535.1 1659208 D 99287 CDS NP_460536.1 16764921 1253095 1660688..1664428 1 NC_003197.1 nitrate reductase 2 subunit alpha 1664428 narZ 1253095 narZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrate reductase 2 subunit alpha NP_460536.1 1660688 D 99287 CDS NP_460537.1 16764922 1253096 1664425..1665969 1 NC_003197.1 nitrate reductase 2 subunit beta 1665969 narY 1253096 narY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrate reductase 2 subunit beta NP_460537.1 1664425 D 99287 CDS NP_460538.1 16764923 1253097 1665969..1666664 1 NC_003197.1 nitrate reductase 2 subunit delta 1666664 narW 1253097 narW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrate reductase 2 subunit delta NP_460538.1 1665969 D 99287 CDS NP_460539.1 16764924 1253098 1666661..1667341 1 NC_003197.1 nitrate reductase 2 subunit gamma 1667341 narV 1253098 narV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrate reductase 2 subunit gamma NP_460539.1 1666661 D 99287 CDS NP_460540.1 16764925 1253099 1667447..1668340 1 NC_003197.1 isomerase 1668340 yddE 1253099 yddE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 isomerase NP_460540.1 1667447 D 99287 CDS NP_460541.1 16764926 1253100 complement(1668376..1669221) 1 NC_003197.1 N-hydroxyarylamine O-acetyltransferase (SW:NHOA_SALTY); N-hydroxyarylamine O-acetyltransferase 1669221 nhoA 1253100 nhoA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-hydroxyarylamine O-acetyltransferase NP_460541.1 1668376 R 99287 CDS NP_460542.1 16764927 1253101 complement(1669505..1670137) 1 NC_003197.1 secreted effector protein SteA 1670137 1253101 STM1583 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secreted effector protein SteA NP_460542.1 1669505 R 99287 CDS NP_460543.1 16764928 1253102 1670649..1672142 1 NC_003197.1 L-asparagine permease 1672142 ansP 1253102 ansP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-asparagine permease NP_460543.1 1670649 D 99287 CDS NP_460544.1 16764929 1253103 complement(1672219..1672440) 1 NC_003197.1 outer membrane lipoprotein 1672440 1253103 STM1585 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_460544.1 1672219 R 99287 CDS NP_460545.1 16764930 1253104 complement(1672585..1673646) 1 NC_003197.1 hypothetical protein 1673646 1253104 STM1586 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460545.1 1672585 R 99287 CDS NP_460546.1 16764931 1253105 1673910..1676030 1 NC_003197.1 outer membrane receptor 1676030 yncD 1253105 yncD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane receptor NP_460546.1 1673910 D 99287 CDS NP_460547.1 16764932 1253106 complement(1676097..1676762) 1 NC_003197.1 GntR family; GntR family regulatory protein 1676762 yncC 1253106 yncC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GntR family regulatory protein NP_460547.1 1676097 R 99287 CDS NP_460548.1 16764933 1253107 complement(1677096..1678166) 1 NC_003197.1 NADP-dependent oxidoreductase 1678166 yncB 1253107 yncB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NADP-dependent oxidoreductase NP_460548.1 1677096 R 99287 CDS NP_460549.1 16764934 1253108 1678345..1678860 1 NC_003197.1 acyltransferase 1678860 yncA 1253108 yncA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acyltransferase NP_460549.1 1678345 D 99287 CDS NP_460550.1 16764935 1253109 1678860..1679309 1 NC_003197.1 inner membrane protein 1679309 ydcZ 1253109 ydcZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460550.1 1678860 D 99287 CDS NP_460551.1 16764936 1253110 complement(1679314..1679547) 1 NC_003197.1 cytoplasmic protein 1679547 ydcY 1253110 ydcY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460551.1 1679314 R 99287 CDS NP_460552.1 16764937 1253111 1679771..1681090 1 NC_003197.1 SrfA; ssrAB-activated gene; SsrAB activated protein 1681090 srfA 1253111 srfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SsrAB activated protein NP_460552.1 1679771 D 99287 CDS NP_460553.1 16764938 1253112 1681095..1684076 1 NC_003197.1 SrfB ; ssrAB-activated gene; SsrAB activated protein 1684076 srfB 1253112 srfB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SsrAB activated protein NP_460553.1 1681095 D 99287 CDS NP_460554.1 16764939 1253113 1684073..1686217 1 NC_003197.1 SrfC; contains predicted coiled-coil structure; ssrAB-activated gene; SsrAB activated protein 1686217 srfC 1253113 srfC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SsrAB activated protein NP_460554.1 1684073 D 99287 CDS NP_460555.1 16764940 1253114 complement(1686262..1686525) 1 NC_003197.1 inner membrane protein 1686525 ydcX 1253114 ydcX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460555.1 1686262 R 99287 CDS NP_460556.2 161353598 1253115 complement(1686834..1688258) 1 NC_003197.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 1688258 ydcW 1253115 ydcW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 gamma-aminobutyraldehyde dehydrogenase NP_460556.2 1686834 R 99287 CDS NP_460557.1 16764942 1253116 complement(1688394..1689818) 1 NC_003197.1 GntR family regulatory protein 1689818 ydcR 1253116 ydcR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GntR family regulatory protein NP_460557.1 1688394 R 99287 CDS NP_460558.1 16764943 1253117 complement(1689954..1690724) 1 NC_003197.1 D-alanyl-D-alanine dipeptidase for peptidoglycan digestion; periplasmic dipeptidase 1690724 pdgL 1253117 pdgL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic dipeptidase NP_460558.1 1689954 R 99287 CDS NP_460560.1 16764945 1253119 complement(1691246..1691644) 1 NC_003197.1 membrane protein 1691644 ugtL 1253119 ugtL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane protein NP_460560.1 1691246 R 99287 CDS NP_460561.1 16764946 1253120 1692181..1693131 1 NC_003197.1 translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; secreted effector protein SifB 1693131 sifB 1253120 sifB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secreted effector protein SifB NP_460561.1 1692181 D 99287 CDS NP_460562.1 16764947 1253121 1693405..1693635 1 NC_003197.1 periplasmic protein 1693635 yncJ 1253121 yncJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460562.1 1693405 D 99287 CDS NP_460563.1 16764948 1253122 complement(1693636..1695600) 1 NC_003197.1 collagenase 1695600 ydcP 1253122 ydcP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 collagenase NP_460563.1 1693636 R 99287 CDS NP_460564.1 16764949 1253123 complement(1695679..1696215) 1 NC_003197.1 oxidoreductase; repressor 1696215 ydcN 1253123 ydcN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 repressor NP_460564.1 1695679 R 99287 CDS NP_460565.1 16764950 1253124 1696306..1697484 1 NC_003197.1 benzoate membrane transport protein 1697484 1253124 STM1606 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 benzoate membrane transport protein NP_460565.1 1696306 D 99287 CDS NP_460566.1 16764951 1253125 complement(1697538..1698206) 1 NC_003197.1 outer membrane lipoprotein 1698206 1253125 STM1607 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_460566.1 1697538 R 99287 CDS NP_460567.1 16764952 1253126 complement(1698362..1698958) 1 NC_003197.1 with TehA confers resistance to tellurite; tellurite resistance protein TehB 1698958 tehB 1253126 tehB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tellurite resistance protein TehB NP_460567.1 1698362 R 99287 CDS NP_460568.1 16764953 1253127 complement(1698945..1699958) 1 NC_003197.1 potassium-tellurite ethidium and proflavin transporter 1699958 tehA 1253127 tehA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 potassium-tellurite ethidium and proflavin transporter NP_460568.1 1698945 R 99287 CDS NP_460569.1 16764954 1253128 1700065..1701045 1 NC_003197.1 involved in lipopolysaccharide biosynthesis; nucleoside-diphosphate-sugar pyrophosphorylase 1701045 ydcK 1253128 ydcK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleoside-diphosphate-sugar pyrophosphorylase NP_460569.1 1700065 D 99287 CDS NP_460570.1 16764955 1253129 complement(1701042..1701581) 1 NC_003197.1 ribosomal-protein-L7/L12-serine acetyltransferase 1701581 rimL 1253129 rimL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribosomal-protein-L7/L12-serine acetyltransferase NP_460570.1 1701042 R 99287 CDS NP_460571.1 16764956 1253130 1701798..1702916 1 NC_003197.1 aminopeptidase SgcX 1702916 1253130 STM1612 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aminopeptidase SgcX NP_460571.1 1701798 D 99287 CDS NP_460572.1 16764957 1253131 1702913..1703194 1 NC_003197.1 PTS system transporter subunit IIB 1703194 1253131 STM1613 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system transporter subunit IIB NP_460572.1 1702913 D 99287 CDS NP_460573.1 16764958 1253132 1703205..1704518 1 NC_003197.1 PTS system transporter subunit IIC 1704518 1253132 STM1614 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system transporter subunit IIC NP_460573.1 1703205 D 99287 CDS NP_460574.1 16764959 1253133 1704532..1705338 1 NC_003197.1 nucleoside triphosphatase 1705338 1253133 STM1615 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleoside triphosphatase NP_460574.1 1704532 D 99287 CDS NP_460575.1 16764960 1253134 1705470..1705907 1 NC_003197.1 PTS system sugar-specific transporter subunit IIA 1705907 1253134 STM1616 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system sugar-specific transporter subunit IIA NP_460575.1 1705470 D 99287 CDS NP_460576.1 16764961 1253135 1705919..1706551 1 NC_003197.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 1706551 1253135 STM1617 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribulose-phosphate 3-epimerase NP_460576.1 1705919 D 99287 CDS NP_460577.1 16764962 1253136 1706567..1707358 1 NC_003197.1 sgc operon DeoR familytranscriptional repressor 1707358 1253136 STM1618 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sgc operon DeoR familytranscriptional repressor NP_460577.1 1706567 D 99287 CDS NP_460578.1 16764963 1253137 1707358..1707795 1 NC_003197.1 aminoglycoside N(6')-acetyltransferase 1707795 1253137 STM1619 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aminoglycoside N(6')-acetyltransferase NP_460578.1 1707358 D 99287 CDS NP_460579.1 16764964 1253138 complement(1707842..1709044) 1 NC_003197.1 oxidase 1709044 1253138 STM1620 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidase NP_460579.1 1707842 R 99287 CDS NP_460580.1 16764965 1253139 complement(1709056..1709631) 1 NC_003197.1 periplasmic protein 1709631 1253139 STM1621 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460580.1 1709056 R 99287 CDS NP_460581.1 16764966 1253140 complement(1709827..1711482) 1 NC_003197.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 1711482 mdoD 1253140 mdoD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucan biosynthesis protein D NP_460581.1 1709827 R 99287 CDS NP_460582.1 16764967 1253141 complement(1711702..1713210) 1 NC_003197.1 carboxylesterase 1713210 1253141 STM1623 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carboxylesterase NP_460582.1 1711702 R 99287 CDS NP_460583.1 16764968 1253142 complement(1713259..1714602) 1 NC_003197.1 cytoplasmic protein 1714602 1253142 STM1624 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460583.1 1713259 R 99287 CDS NP_460584.1 16764969 1253143 1714895..1715818 1 NC_003197.1 LysR family transcriptional regulator 1715818 ydcI 1253143 ydcI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_460584.1 1714895 D 99287 CDS NP_460585.1 16764970 1253144 complement(1715879..1717504) 1 NC_003197.1 methyl-accepting chemotaxis protein III 1717504 trg 1253144 trg Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methyl-accepting chemotaxis protein III NP_460585.1 1715879 R 99287 CDS NP_460586.1 16764971 1253145 complement(1717673..1718791) 1 NC_003197.1 alcohol dehydrogenase class III 1718791 1253145 STM1627 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alcohol dehydrogenase class III NP_460586.1 1717673 R 99287 CDS NP_460587.1 16764972 1253146 complement(1718823..1719098) 1 NC_003197.1 cytoplasmic protein 1719098 1253146 STM1628 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460587.1 1718823 R 99287 CDS NP_460589.1 16764974 1253148 complement(1720151..1720867) 1 NC_003197.1 inner membrane protein 1720867 1253148 STM1630 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460589.1 1720151 R 99287 CDS NP_460590.1 16764975 1253149 1721293..1722519 1 NC_003197.1 deacylase activity; secreted effector J; Salmonella translocated effector; regulated by SPI-2; secreted effector protein SseJ 1722519 sseJ 1253149 sseJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secreted effector protein SseJ NP_460590.1 1721293 D 99287 CDS NP_460591.1 16764976 1253150 complement(1722640..1722984) 1 NC_003197.1 inner membrane protein 1722984 1253150 STM1632 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460591.1 1722640 R 99287 CDS NP_460592.1 16764977 1253151 1723891..1724652 1 NC_003197.1 extracellular solute-binding protein 1724652 1253151 STM1633 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 extracellular solute-binding protein NP_460592.1 1723891 D 99287 CDS NP_460593.1 16764978 1253152 1724659..1725306 1 NC_003197.1 ABC transporter permease 1725306 1253152 STM1634 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter permease NP_460593.1 1724659 D 99287 CDS NP_460594.1 16764979 1253153 1725331..1726062 1 NC_003197.1 ABC transporter ATP-binding protein 1726062 1253153 STM1635 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter ATP-binding protein NP_460594.1 1725331 D 99287 CDS NP_460595.1 16764980 1253154 1726059..1726739 1 NC_003197.1 ABC transporter membrane protein 1726739 1253154 STM1636 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter membrane protein NP_460595.1 1726059 D 99287 CDS NP_460596.1 16764981 1253155 1726876..1728426 1 NC_003197.1 inner membrane protein 1728426 1253155 STM1637 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460596.1 1726876 D 99287 CDS NP_460597.1 16764982 1253156 1729115..1729552 1 NC_003197.1 SAM-dependent methyltransferase 1729552 1253156 STM1638 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SAM-dependent methyltransferase NP_460597.1 1729115 D 99287 CDS NP_460598.1 16764983 1253157 complement(1729823..1730353) 1 NC_003197.1 B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; cytochrome b561 1730353 cybB 1253157 cybB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome b561 NP_460598.1 1729823 R 99287 CDS NP_460599.1 16764984 1253158 complement(1730470..1731270) 1 NC_003197.1 inner membrane protein 1731270 ydcF 1253158 ydcF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460599.1 1730470 R 99287 CDS NP_460600.3 409994417 1253159 complement(1731334..1735236) 1 NC_003197.1 involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase 1735236 hrpA 1253159 hrpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent RNA helicase NP_460600.3 1731334 R 99287 CDS NP_460601.1 16764986 1253160 1735437..1736042 1 NC_003197.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; FMN-dependent NADH-azoreductase 1736042 acpD 1253160 acpD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 FMN-dependent NADH-azoreductase NP_460601.1 1735437 D 99287 CDS NP_460602.1 16764987 1253161 complement(1736039..1736488) 1 NC_003197.1 inner membrane protein 1736488 1253161 STM1643 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460602.1 1736039 R 99287 CDS NP_460603.1 16764988 1253162 complement(1736631..1736954) 1 NC_003197.1 periplasmic protein 1736954 ydbL 1253162 ydbL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460603.1 1736631 R 99287 CDS NP_460604.1 16764989 1253163 complement(1736962..1737153) 1 NC_003197.1 outer membrane lipoprotein 1737153 ynbE 1253163 ynbE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_460604.1 1736962 R 99287 CDS NP_460605.1 16764990 1253164 complement(1737153..1739789) 1 NC_003197.1 periplasmic protein 1739789 ydbH 1253164 ydbH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460605.1 1737153 R 99287 CDS NP_460606.1 16764991 1253165 1740029..1741018 1 NC_003197.1 Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase 1741018 ldhA 1253165 ldhA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-lactate dehydrogenase NP_460606.1 1740029 D 99287 CDS NP_460607.1 16764992 1253166 1741129..1741539 1 NC_003197.1 heat-inducible protein HslJ 1741539 hslJ 1253166 hslJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 heat-inducible protein HslJ NP_460607.1 1741129 D 99287 CDS NP_460608.1 16764993 1253167 complement(1741583..1741738) 1 NC_003197.1 cytoplasmic protein 1741738 1253167 STM1649 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460608.1 1741583 R 99287 CDS NP_460609.1 16764994 1253168 1741765..1742064 1 NC_003197.1 hypothetical protein 1742064 1253168 STM1650 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460609.1 1741765 D 99287 CDS NP_460610.1 16764995 1253169 1742125..1745649 1 NC_003197.1 pyruvate-flavodoxin oxidoreductase 1745649 nifJ 1253169 nifJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate-flavodoxin oxidoreductase NP_460610.1 1742125 D 99287 CDS NP_460611.1 16764996 1253170 1746131..1746565 1 NC_003197.1 universal stress protein F 1746565 ynaF 1253170 ynaF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 universal stress protein F NP_460611.1 1746131 D 99287 CDS NP_460612.1 16764997 1253171 complement(1746615..1746953) 1 NC_003197.1 multidrug transporter EmrE 1746953 1253171 STM1653 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug transporter EmrE NP_460612.1 1746615 R 99287 CDS NP_460613.1 16764998 1253172 1747309..1748244 1 NC_003197.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; tRNA 2-thiocytidine biosynthesis protein TtcA 1748244 ydaO 1253172 ydaO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA 2-thiocytidine biosynthesis protein TtcA NP_460613.1 1747309 D 99287 CDS NP_460614.1 16764999 1253173 complement(1748288..1749661) 1 NC_003197.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 1749661 dbpA 1253173 dbpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent RNA helicase DbpA NP_460614.1 1748288 R 99287 CDS NP_460615.1 16765000 1253174 complement(1750148..1751131) 1 NC_003197.1 zinc transport protein ZntB 1751131 zntB 1253174 zntB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 zinc transport protein ZntB NP_460615.1 1750148 R 99287 CDS NP_460616.1 16765001 1253175 complement(1751277..1752431) 1 NC_003197.1 methyl-accepting chemotaxis protein 1752431 1253175 STM1657 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methyl-accepting chemotaxis protein NP_460616.1 1751277 R 99287 CDS NP_460617.1 16765002 1253176 complement(1752842..1753405) 1 NC_003197.1 contains Smr domain; DNA endonuclease 1753405 ydaL 1253176 ydaL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA endonuclease NP_460617.1 1752842 R 99287 CDS NP_460618.1 16765003 1253177 1753663..1754178 1 NC_003197.1 O-6-alkylguanine-DNA:cysteine-protein methyltransferase; methylated-DNA--protein-cysteine methyltransferase 1754178 ogt 1253177 ogt Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methylated-DNA--protein-cysteine methyltransferase NP_460618.1 1753663 D 99287 CDS NP_460619.2 39546323 1253178 1754374..1755126 1 NC_003197.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1755126 fnr 1253178 fnr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fumarate/nitrate reduction transcriptional regulator NP_460619.2 1754374 D 99287 CDS NP_460620.1 16765005 1253179 1755277..1756224 1 NC_003197.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein E 1756224 ydaA 1253179 ydaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 universal stress protein E NP_460620.1 1755277 D 99287 CDS NP_460621.1 16765006 1253180 complement(1756279..1756533) 1 NC_003197.1 inner membrane protein 1756533 ynaJ 1253180 ynaJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460621.1 1756279 R 99287 CDS NP_460622.1 16765007 1253181 1756772..1757803 1 NC_003197.1 integral membrane protein 1757803 ynaI 1253181 ynaI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integral membrane protein NP_460622.1 1756772 D 99287 CDS NP_460623.1 16765008 1253182 complement(1757889..1758491) 1 NC_003197.1 transcriptional regulator 1758491 1253182 STM1664 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_460623.1 1757889 R 99287 CDS NP_460624.1 16765009 1253183 1758535..1759221 1 NC_003197.1 cytoplasmic protein 1759221 1253183 STM1665 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460624.1 1758535 D 99287 CDS NP_460625.1 16765010 1253185 complement(1759693..1760250) 1 NC_003197.1 thiol peroxidase 1760250 1253185 STM1667 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiol peroxidase NP_460625.1 1759693 R 99287 CDS NP_460626.1 16765011 1253186 complement(1760349..1761179) 1 NC_003197.1 hypothetical protein 1761179 1253186 STM1668 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460626.1 1760349 R 99287 CDS NP_460627.1 16765012 1253187 complement(1761200..1763182) 1 NC_003197.1 invasin-like protein 1763182 1253187 STM1669 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 invasin-like protein NP_460627.1 1761200 R 99287 CDS NP_460628.1 16765013 1253188 complement(1763257..1764102) 1 NC_003197.1 lipoprotein 1764102 1253188 STM1670 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein NP_460628.1 1763257 R 99287 CDS NP_460629.1 16765014 1253189 1764396..1765253 1 NC_003197.1 regulatory protein 1765253 1253189 STM1671 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_460629.1 1764396 D 99287 CDS YP_006892394.1 409994418 2673745 1765644..1766753 1 NC_003197.1 cytoplasmic protein 1766753 2673745 STM1672 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein YP_006892394.1 1765644 D 99287 CDS NP_460631.2 308065966 1253191 complement(1766967..1767128) 1 NC_003197.1 outer membrane lipoprotein 1767128 1253191 STM1673 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_460631.2 1766967 R 99287 CDS NP_460632.1 16765017 1253192 complement(1767332..1767922) 1 NC_003197.1 AraC family; helix-turn-helix; AraC family regulatory protein 1767922 1253192 STM1674 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AraC family regulatory protein NP_460632.1 1767332 R 99287 CDS NP_460633.1 16765018 1253193 1768000..1768713 1 NC_003197.1 short-chain alcohol dehydrogenase 1768713 1253193 STM1675 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 short-chain alcohol dehydrogenase NP_460633.1 1768000 D 99287 CDS NP_460634.1 16765019 1253194 complement(1768804..1769673) 1 NC_003197.1 aldo/keto reductase 1769673 1253194 STM1676 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aldo/keto reductase NP_460634.1 1768804 R 99287 CDS NP_460635.1 16765020 1253195 complement(1769947..1770852) 1 NC_003197.1 LysR family transcriptional regulator 1770852 1253195 STM1677 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_460635.1 1769947 R 99287 CDS NP_460636.1 16765021 1253196 1770971..1771900 1 NC_003197.1 2'-hydroxyisoflavone reductase 1771900 1253196 STM1678 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2'-hydroxyisoflavone reductase NP_460636.1 1770971 D 99287 CDS NP_460637.1 16765022 1253197 complement(1771997..1773610) 1 NC_003197.1 periplasmic murein tripeptide transport protein 1773610 mppA 1253197 mppA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic murein tripeptide transport protein NP_460637.1 1771997 R 99287 CDS NP_460638.1 16765023 1253198 1773800..1774528 1 NC_003197.1 murein peptide amidase A 1774528 ycjI 1253198 ycjI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 murein peptide amidase A NP_460638.1 1773800 D 99287 CDS NP_460639.1 16765024 1253199 complement(1774503..1775468) 1 NC_003197.1 chloromuconate cycloisomerase 1775468 ycjG 1253199 ycjG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chloromuconate cycloisomerase NP_460639.1 1774503 R 99287 CDS NP_460640.1 16765025 1253200 1775584..1776090 1 NC_003197.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1776090 tpx 1253200 tpx Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiol peroxidase NP_460640.1 1775584 D 99287 CDS NP_460641.1 16765026 1253201 complement(1776180..1777721) 1 NC_003197.1 regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR 1777721 tyrR 1253201 tyrR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional regulator TyrR NP_460641.1 1776180 R 99287 CDS NP_460642.1 16765027 1253202 complement(1777869..1778930) 1 NC_003197.1 hypothetical protein 1778930 1253202 STM1684 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460642.1 1777869 R 99287 CDS NP_460643.2 308065965 1253203 complement(1778927..1780324) 1 NC_003197.1 ATPase 1780324 ycjX 1253203 ycjX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATPase NP_460643.2 1778927 R 99287 CDS NP_460644.1 16765029 1253204 complement(1780473..1780787) 1 NC_003197.1 rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; thiosulfate:cyanide sulfurtransferase 1780787 pspE 1253204 pspE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiosulfate:cyanide sulfurtransferase NP_460644.1 1780473 R 99287 CDS NP_460645.1 16765030 1253205 complement(1780863..1781081) 1 NC_003197.1 inner membrane phage-shock protein 1781081 pspD 1253205 pspD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane phage-shock protein NP_460645.1 1780863 R 99287 CDS NP_460646.1 16765031 1253206 complement(1781104..1781463) 1 NC_003197.1 with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; DNA-binding transcriptional activator PspC 1781463 pspC 1253206 pspC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional activator PspC NP_460646.1 1781104 R 99287 CDS NP_460647.1 16765032 1253207 complement(1781463..1781687) 1 NC_003197.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein PspB 1781687 pspB 1253207 pspB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage shock protein PspB NP_460647.1 1781463 R 99287 CDS NP_460648.1 16765033 1253208 complement(1781747..1782415) 1 NC_003197.1 involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA 1782415 pspA 1253208 pspA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage shock protein PspA NP_460648.1 1781747 R 99287 CDS NP_460649.1 16765034 1253209 1782586..1783566 1 NC_003197.1 transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; transcription activator 1783566 pspF 1253209 pspF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcription activator NP_460649.1 1782586 D 99287 CDS NP_460650.1 16765035 1253210 1783678..1785327 1 NC_003197.1 peptide transport periplasmic protein SapA (SW:SAPA_SALTY); ABC superfamily periplasmic protein; peptide ABC transporter substrate-binding protein SapA 1785327 sapA 1253210 sapA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptide ABC transporter substrate-binding protein SapA NP_460650.1 1783678 D 99287 CDS NP_460651.1 16765036 1253211 1785324..1786289 1 NC_003197.1 peptide transport system permease protein SapB (SW:SAPB_SALTY); ABC superfamily membrane protein; peptide ABC transporter permease SapB 1786289 sapB 1253211 sapB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptide ABC transporter permease SapB NP_460651.1 1785324 D 99287 CDS NP_460652.1 16765037 1253212 1786276..1787166 1 NC_003197.1 peptide transport system permease protein SapC (SW:SAPC_SALTY); ABC superfamily membrane protein; peptide ABC transporter permease SapC 1787166 sapC 1253212 sapC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptide ABC transporter permease SapC NP_460652.1 1786276 D 99287 CDS NP_460653.1 16765038 1253213 1787166..1788158 1 NC_003197.1 peptide transport system atp-binding protein SapD (SW:SAPD_SALTY); ABC superfamily ATP-binding protein; peptide ABC transporter ATP-binding protein SapD 1788158 sapD 1253213 sapD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptide ABC transporter ATP-binding protein SapD NP_460653.1 1787166 D 99287 CDS NP_460654.1 16765039 1253214 1788160..1788966 1 NC_003197.1 peptide transport system atp-binding protein SapF (SW:SAPF_SALTY); ABC superfamily ATP-binding protein; peptide ABC transporter ATP-binding protein SapF 1788966 sapF 1253214 sapF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptide ABC transporter ATP-binding protein SapF NP_460654.1 1788160 D 99287 CDS NP_460655.1 16765040 1253215 complement(1789095..1789691) 1 NC_003197.1 diguanylate cyclase/phosphodiesterase domain 2; diguanylate cyclase/phosphodiesterase domain-containing protein 1789691 1253215 STM1697 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diguanylate cyclase/phosphodiesterase domain-containing protein NP_460655.1 1789095 R 99287 CDS NP_460656.1 16765041 1253216 complement(1790157..1791530) 1 NC_003197.1 secreted effector kinase SteC 1791530 1253216 STM1698 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secreted effector kinase SteC NP_460656.1 1790157 R 99287 CDS NP_460657.1 16765042 1253217 1791565..1791744 1 NC_003197.1 e6 protein; hypothetical protein 1791744 1253217 STM1698A Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460657.1 1791565 D 99287 CDS NP_460658.1 16765043 1253218 1791719..1792018 1 NC_003197.1 hypothetical 10.4 kDa protein in fabI/envM 5'region (SW:YCJE_SALTY); hypothetical protein 1792018 1253218 STM1699 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460658.1 1791719 D 99287 CDS NP_460659.1 16765044 1253219 1792136..1792924 1 NC_003197.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase FabI 1792924 fabI 1253219 fabI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 enoyl-ACP reductase FabI NP_460659.1 1792136 D 99287 CDS NP_460660.1 16765045 1253220 1793124..1794104 1 NC_003197.1 cytoplasmic protein 1794104 yciW 1253220 yciW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460660.1 1793124 D 99287 CDS NP_460661.1 16765046 1253221 1794346..1796280 1 NC_003197.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 1796280 rnb 1253221 rnb Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 exoribonuclease II NP_460661.1 1794346 D 99287 CDS NP_460662.1 16765047 1253222 1796542..1798524 1 NC_003197.1 c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 1798524 yciR 1253222 yciR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNase II stability modulator NP_460662.1 1796542 D 99287 CDS YP_006892395.1 409994419 13865731 1798646..1798825 1 NC_003197.1 hypothetical protein 1798825 13865731 STM05225 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892395.1 1798646 D 99287 CDS NP_460663.1 16765048 1253223 1798912..1799664 1 NC_003197.1 DeoR family regulatory protein 1799664 yciT 1253223 yciT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DeoR family regulatory protein NP_460663.1 1798912 D 99287 CDS NP_460664.1 16765049 1253224 1799923..1800141 1 NC_003197.1 osmotically inducible lipoprotein B 1800141 osmB 1253224 osmB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 osmotically inducible lipoprotein B NP_460664.1 1799923 D 99287 CDS NP_460665.1 16765050 1253225 complement(1800261..1800587) 1 NC_003197.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 1800587 yciH 1253225 yciH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 translation initiation factor Sui1 NP_460665.1 1800261 R 99287 CDS NP_460666.1 16765051 1253226 complement(1800587..1801324) 1 NC_003197.1 OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1801324 pyrF 1253226 pyrF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 orotidine 5'-phosphate decarboxylase NP_460666.1 1800587 R 99287 CDS NP_460667.1 16765052 1253227 complement(1801515..1802684) 1 NC_003197.1 N-acetylglucosaminyl transferase 1802684 yciM 1253227 yciM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-acetylglucosaminyl transferase NP_460667.1 1801515 R 99287 CDS NP_460668.1 16765053 1253228 complement(1802691..1802999) 1 NC_003197.1 inner membrane protein 1802999 yciS 1253228 yciS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460668.1 1802691 R 99287 CDS NP_460669.1 16765054 1253229 complement(1803149..1803913) 1 NC_003197.1 phosphatidylglycerophosphate phosphatase B 1803913 pgpB 1253229 pgpB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphatidylglycerophosphate phosphatase B NP_460669.1 1803149 R 99287 CDS NP_460670.1 16765055 1253230 1804109..1804699 1 NC_003197.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1804699 ribA 1253230 ribA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GTP cyclohydrolase II NP_460670.1 1804109 D 99287 CDS NP_460671.1 16765056 1253231 complement(1804755..1807430) 1 NC_003197.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1807430 acnA 1253231 acnA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aconitate hydratase NP_460671.1 1804755 R 99287 CDS NP_460672.1 16765057 1253232 complement(1808407..1809381) 1 NC_003197.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; HTH-type transcriptional regulator CysB 1809381 cysB 1253232 cysB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator CysB NP_460672.1 1808407 R 99287 CDS NP_460673.1 16765058 1253233 complement(1809792..1812389) 1 NC_003197.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1812389 topA 1253233 topA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA topoisomerase I NP_460673.1 1809792 R 99287 CDS NP_460674.1 16765059 1253234 1812792..1813043 1 NC_003197.1 cytoplasmic protein 1813043 yciN 1253234 yciN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460674.1 1812792 D 99287 CDS NP_460675.1 16765060 1253235 complement(1813085..1814131) 1 NC_003197.1 SohB; periplasmic protein; member of the peptidase S49 family; peptidase 1814131 sohB 1253235 sohB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidase NP_460675.1 1813085 R 99287 CDS NP_460676.1 16765061 1253236 1814369..1815130 1 NC_003197.1 oxoacyl-ACP reductase 1815130 yciK 1253236 yciK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxoacyl-ACP reductase NP_460676.1 1814369 D 99287 CDS NP_460677.1 16765062 1253237 1815127..1815717 1 NC_003197.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1815717 cobA 1253237 cobA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cob(I)yrinic acid a,c-diamide adenosyltransferase NP_460677.1 1815127 D 99287 CDS NP_460678.1 16765063 1253238 complement(1815804..1816679) 1 NC_003197.1 catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; rRNA large subunit pseudouridylate synthase B 1816679 yciL 1253238 yciL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA large subunit pseudouridylate synthase B NP_460678.1 1815804 R 99287 CDS NP_460679.1 16765064 1253239 complement(1816780..1817400) 1 NC_003197.1 translation factor; hypothetical protein 1817400 1253239 STM1720 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460679.1 1816780 R 99287 CDS NP_460680.1 16765065 1253240 complement(1817408..1818289) 1 NC_003197.1 TrpH protein (SW:TRPH_SALTY); TrpR controlled transcriptional unit in the 5' upstream region of the trp operon; protein TrpH 1818289 trpH 1253240 trpH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protein TrpH NP_460680.1 1817408 R 99287 CDS YP_009026985.1 614908128 19018714 1818411..1818455 1 NC_003197.1 trp operon leader peptide 1818455 19018714 STM1722a Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 trp operon leader peptide YP_009026985.1 1818411 D 99287 CDS NP_460682.1 16765067 1253242 1818550..1820112 1 NC_003197.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1820112 trpE 1253242 trpE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anthranilate synthase component I NP_460682.1 1818550 D 99287 CDS NP_460683.1 16765068 1253243 1820112..1821707 1 NC_003197.1 bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1821707 trpD 1253243 trpD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase NP_460683.1 1820112 D 99287 CDS NP_460684.1 16765069 1253244 1821711..1823069 1 NC_003197.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1823069 trpC 1253244 trpC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase NP_460684.1 1821711 D 99287 CDS NP_460685.1 16765070 1253245 1823079..1824272 1 NC_003197.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1824272 trpB 1253245 trpB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tryptophan synthase subunit beta NP_460685.1 1823079 D 99287 CDS NP_460686.1 16765071 1253246 1824272..1825078 1 NC_003197.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1825078 trpA 1253246 trpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tryptophan synthase subunit alpha NP_460686.1 1824272 D 99287 CDS NP_460687.1 16765072 1253247 1825558..1825740 1 NC_003197.1 cytoplasmic protein 1825740 yciG 1253247 yciG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460687.1 1825558 D 99287 CDS NP_460688.1 16765073 1253248 1825830..1826333 1 NC_003197.1 cytoplasmic protein 1826333 yciF 1253248 yciF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460688.1 1825830 D 99287 CDS NP_460689.1 16765074 1253249 1826407..1826913 1 NC_003197.1 cytoplasmic protein 1826913 yciE 1253249 yciE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460689.1 1826407 D 99287 CDS NP_460690.1 16765075 1253250 1826933..1827811 1 NC_003197.1 catalase 1827811 1253250 STM1731 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 catalase NP_460690.1 1826933 D 99287 CDS NP_460691.1 16765076 1253251 complement(1827893..1828531) 1 NC_003197.1 receptor for colicin S4; outer membrane protein W 1828531 ompW 1253251 ompW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein W NP_460691.1 1827893 R 99287 CDS NP_460692.1 16765077 1253252 1828869..1829273 1 NC_003197.1 ferredoxin 1829273 1253252 STM1733 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferredoxin NP_460692.1 1828869 D 99287 CDS NP_460693.1 16765078 1253253 1829299..1830042 1 NC_003197.1 hypothetical protein 1830042 1253253 STM1734 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460693.1 1829299 D 99287 CDS NP_460694.1 16765079 1253254 1830099..1830638 1 NC_003197.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1830638 yciB 1253254 yciB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 intracellular septation protein A NP_460694.1 1830099 D 99287 CDS NP_460695.1 16765080 1253255 1830799..1831200 1 NC_003197.1 YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 1831200 yciA 1253255 yciA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acyl-CoA thioester hydrolase NP_460695.1 1830799 D 99287 CDS NP_460696.1 16765081 1253256 complement(1831260..1831988) 1 NC_003197.1 membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of iron-siderophore complexes, vitamin B12 and colicins; transport protein TonB 1831988 tonB 1253256 tonB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transport protein TonB NP_460696.1 1831260 R 99287 CDS NP_460697.1 16765082 1253257 1832212..1832508 1 NC_003197.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; cytoplasmic protein 1832508 yciI 1253257 yciI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460697.1 1832212 D 99287 CDS NP_460698.1 16765083 1253258 1832868..1834328 1 NC_003197.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1834328 cls 1253258 cls Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cardiolipin synthetase NP_460698.1 1832868 D 99287 CDS YP_006892396.1 409994420 2673771 1834362..1834691 1 NC_003197.1 dsDNA-mimic protein 1834691 2673771 STM1740 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dsDNA-mimic protein YP_006892396.1 1834362 D 99287 CDS NP_460700.1 16765085 1253260 complement(1834739..1835575) 1 NC_003197.1 voltage-gated potassium channel 1835575 1253260 STM1741 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 voltage-gated potassium channel NP_460700.1 1834739 R 99287 CDS NP_460701.1 16765086 1253261 complement(1835623..1836627) 1 NC_003197.1 oligopeptide transport ATP-binding protein; OppF (SW:OPPF_SALTY); ABC superfamily ATP-binding protein; oligopeptide ABC transporter ATP-binding protein OppF 1836627 oppF 1253261 oppF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oligopeptide ABC transporter ATP-binding protein OppF NP_460701.1 1835623 R 99287 CDS NP_460702.1 16765087 1253262 complement(1836624..1837631) 1 NC_003197.1 oligopeptide transport ATP-binding protein OppD (SW:OPPD_SALTY); ABC superfamily ATP-binding protein; oligopeptide ABC transporter ATP-binding protein OppD 1837631 oppD 1253262 oppD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oligopeptide ABC transporter ATP-binding protein OppD NP_460702.1 1836624 R 99287 CDS NP_460703.1 16765088 1253263 complement(1837643..1838551) 1 NC_003197.1 oligopeptide transport system permease protein OppC (SW:OPPC_SALTY); ABC superfamily membrane protein; oligopeptide ABC transporter permease OppC 1838551 oppC 1253263 oppC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oligopeptide ABC transporter permease OppC NP_460703.1 1837643 R 99287 CDS NP_460704.1 16765089 1253264 complement(1838566..1839486) 1 NC_003197.1 oligopeptide transport system permease protein OppB (SW:OPPB_SALTY); ABC superfamily membrane protein; oligopeptide ABC transporter permease OppB 1839486 oppB 1253264 oppB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oligopeptide ABC transporter permease OppB NP_460704.1 1838566 R 99287 CDS NP_460705.2 39546324 1253265 complement(1839608..1841239) 1 NC_003197.1 periplasmic oligopeptide-binding protein (SW:OPPA_SALTY); ABC superfamily periplasmic protein; contains chaperone properties; oligopeptide ABC transporter substrate-binding protein OppA 1841239 oppA 1253265 oppA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oligopeptide ABC transporter substrate-binding protein OppA NP_460705.2 1839608 R 99287 CDS NP_460707.1 16765092 1253267 complement(1842004..1842651) 1 NC_003197.1 MarC family integral membrane protein 1842651 ychE 1253267 ychE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MarC family integral membrane protein NP_460707.1 1842004 R 99287 CDS NP_460708.1 16765093 1253268 1843128..1845806 1 NC_003197.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1845806 adhE 1253268 adhE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional acetaldehyde-CoA/alcohol dehydrogenase NP_460708.1 1843128 D 99287 CDS NP_460709.1 16765094 1253269 complement(1846003..1846620) 1 NC_003197.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1846620 tdk 1253269 tdk Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thymidine kinase NP_460709.1 1846003 R 99287 CDS NP_460710.1 16765095 1253270 1847283..1847696 1 NC_003197.1 DNA-binding protein H-NS; histone-like protein HLP-II; protein H1; protein B1 (SW:HNS_SALTY); HU; BH2; HD; NS; pleiotropic regulator; DNA-binding protein H-NS 1847696 hns 1253270 hns Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding protein H-NS NP_460710.1 1847283 D 99287 CDS NP_460711.1 16765096 1253271 complement(1847828..1848736) 1 NC_003197.1 together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalU 1848736 galU 1253271 galU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UTP--glucose-1-phosphate uridylyltransferase subunit GalU NP_460711.1 1847828 R 99287 CDS NP_460712.1 16765097 1253272 complement(1848939..1849952) 1 NC_003197.1 RpoS regulator 1849952 hnr 1253272 hnr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RpoS regulator NP_460712.1 1848939 R 99287 CDS NP_460713.1 16765098 1253273 complement(1850043..1850948) 1 NC_003197.1 phosphoesterase 1850948 ychK 1253273 ychK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoesterase NP_460713.1 1850043 R 99287 CDS NP_460714.1 16765099 1253274 1851059..1851517 1 NC_003197.1 hypothetical protein 1851517 1253274 STM1755 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460714.1 1851059 D 99287 CDS NP_460715.1 16765100 1253275 1851568..1852410 1 NC_003197.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1852410 purU 1253275 purU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formyltetrahydrofolate deformylase NP_460715.1 1851568 D 99287 CDS NP_460716.1 16765101 1253279 complement(1853726..1855255) 1 NC_003197.1 contains TPR repeats; hypothetical protein 1855255 1253279 STM1760 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460716.1 1853726 R 99287 CDS NP_460717.1 16765102 1253280 complement(1855497..1856174) 1 NC_003197.1 nitrate reductase 1 subunit gamma 1856174 narI 1253280 narI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrate reductase 1 subunit gamma NP_460717.1 1855497 R 99287 CDS NP_460718.1 16765103 1253281 complement(1856174..1856884) 1 NC_003197.1 nitrate reductase 1 subunit delta 1856884 narJ 1253281 narJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrate reductase 1 subunit delta NP_460718.1 1856174 R 99287 CDS NP_460719.1 16765104 1253282 complement(1856881..1858416) 1 NC_003197.1 nitrate reductase 1 subunit beta 1858416 narH 1253282 narH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrate reductase 1 subunit beta NP_460719.1 1856881 R 99287 CDS NP_460720.1 16765105 1253283 complement(1858413..1862156) 1 NC_003197.1 nitrate reductase 1 subunit alpha 1862156 narG 1253283 narG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrate reductase 1 subunit alpha NP_460720.1 1858413 R 99287 CDS NP_460721.1 16765106 1253284 complement(1862544..1863941) 1 NC_003197.1 nitrite extrusion protein 1863941 narK 1253284 narK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrite extrusion protein NP_460721.1 1862544 R 99287 CDS NP_460722.1 16765107 1253285 1864282..1866078 1 NC_003197.1 sensory histidine kinase NarX 1866078 narX 1253285 narX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensory histidine kinase NarX NP_460722.1 1864282 D 99287 CDS NP_460723.1 16765108 1253286 1866071..1866721 1 NC_003197.1 two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; response regulator NarL 1866721 narL 1253286 narL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 response regulator NarL NP_460723.1 1866071 D 99287 CDS NP_460724.2 308065964 1253287 complement(1866722..1868104) 1 NC_003197.1 invasin 1868104 ychP 1253287 ychP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 invasin NP_460724.2 1866722 R 99287 CDS NP_460725.1 16765110 1253288 1868323..1868676 1 NC_003197.1 hypothetical protein 1868676 1253288 STM1769 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460725.1 1868323 D 99287 CDS NP_460726.1 16765111 1253289 complement(1868756..1868986) 1 NC_003197.1 in Escherichia coli this protein putatively regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator 1868986 chaB 1253289 chaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cation transport regulator NP_460726.1 1868756 R 99287 CDS NP_460727.1 16765112 1253290 1869253..1870353 1 NC_003197.1 calcium/sodium:proton antiporter 1870353 chaA 1253290 chaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 calcium/sodium:proton antiporter NP_460727.1 1869253 D 99287 CDS NP_460728.1 16765113 1253291 complement(1870407..1871261) 1 NC_003197.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1871261 kdsA 1253291 kdsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-dehydro-3-deoxyphosphooctonate aldolase NP_460728.1 1870407 R 99287 CDS NP_460729.1 16765114 1253292 complement(1871299..1872108) 1 NC_003197.1 regulatory protein SirB1 1872108 sirB1 1253292 sirB1 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein SirB1 NP_460729.1 1871299 R 99287 CDS NP_460730.1 16765115 1253293 complement(1872112..1872501) 1 NC_003197.1 regulation of invasion genes; regulatory protein SirB2 1872501 sirB2 1253293 sirB2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein SirB2 NP_460730.1 1872112 R 99287 CDS NP_460731.1 16765116 1253294 complement(1872498..1873331) 1 NC_003197.1 HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; release factor glutamine methyltransferase 1873331 hemK 1253294 hemK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 release factor glutamine methyltransferase NP_460731.1 1872498 R 99287 CDS NP_460732.1 16765117 1253295 complement(1873331..1874413) 1 NC_003197.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1874413 prfA 1253295 prfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptide chain release factor 1 NP_460732.1 1873331 R 99287 CDS NP_460733.1 16765118 1253296 complement(1874454..1875710) 1 NC_003197.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1875710 hemA 1253296 hemA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamyl-tRNA reductase NP_460733.1 1874454 R 99287 CDS NP_460734.1 16765119 1253297 1876024..1876647 1 NC_003197.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1876647 lolB 1253297 lolB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein LolB NP_460734.1 1876024 D 99287 CDS NP_460735.1 16765120 1253298 1876644..1877495 1 NC_003197.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1877495 ipk 1253298 ipk Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase NP_460735.1 1876644 D 99287 CDS NP_460736.1 16765121 1253299 1877761..1878708 1 NC_003197.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1878708 prsA 1253299 prsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribose-phosphate pyrophosphokinase NP_460736.1 1877761 D 99287 CDS NP_460737.2 308065963 1253300 1878833..1880518 1 NC_003197.1 transports mono and dicarboxylates; member of the SulP family of sulfate transporters; C4-dicarboxylic acid transporter 1880518 ychM 1253300 ychM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 C4-dicarboxylic acid transporter NP_460737.2 1878833 D 99287 CDS NP_460738.1 16765123 1253301 complement(1880563..1880841) 1 NC_003197.1 YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; inner membrane protein 1880841 ychH 1253301 ychH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460738.1 1880563 R 99287 CDS NP_460739.2 39546325 1253302 1881117..1881701 1 NC_003197.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1881701 pth 1253302 pth Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidyl-tRNA hydrolase NP_460739.2 1881117 D 99287 CDS NP_460740.1 16765125 1253303 1881818..1882909 1 NC_003197.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; ribosome-binding ATPase 1882909 ychF 1253303 ychF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribosome-binding ATPase NP_460740.1 1881818 D 99287 CDS NP_460741.1 16765126 1253304 complement(1883068..1884333) 1 NC_003197.1 cytoplasmic protein 1884333 1253304 STM1785 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460741.1 1883068 R 99287 CDS NP_460742.1 16765127 1253305 1884828..1885946 1 NC_003197.1 hydrogenase-1 small subunit 1885946 1253305 STM1786 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase-1 small subunit NP_460742.1 1884828 D 99287 CDS NP_460743.1 16765128 1253306 1885943..1887736 1 NC_003197.1 involved in hydrogen cycling during fermentative growth; hydrogenase 1 large subunit 1887736 1253306 STM1787 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase 1 large subunit NP_460743.1 1885943 D 99287 CDS NP_460744.1 16765129 1253307 1887755..1888486 1 NC_003197.1 hydrogenase 1 b-type cytochrome subunit 1888486 1253307 STM1788 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase 1 b-type cytochrome subunit NP_460744.1 1887755 D 99287 CDS NP_460745.1 16765130 1253308 1888483..1889079 1 NC_003197.1 HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 1889079 1253308 STM1789 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase 1 maturation protease NP_460745.1 1888483 D 99287 CDS NP_460746.1 16765131 1253309 1889069..1889473 1 NC_003197.1 involved in processing hydrogenase proteins HyaA and HyaB; hydrogenase-1 operon protein HyaE 1889473 1253309 STM1790 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase-1 operon protein HyaE NP_460746.1 1889069 D 99287 CDS NP_460747.1 16765132 1253310 1889470..1890318 1 NC_003197.1 hydrogenase-1 protein 1890318 1253310 STM1791 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase-1 protein NP_460747.1 1889470 D 99287 CDS NP_460748.1 16765133 1253311 1890393..1891937 1 NC_003197.1 cytochrome oxidase subunit I 1891937 1253311 STM1792 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome oxidase subunit I NP_460748.1 1890393 D 99287 CDS NP_460749.1 16765134 1253312 1891949..1893085 1 NC_003197.1 cytochrome oxidase subunit II 1893085 1253312 STM1793 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome oxidase subunit II NP_460749.1 1891949 D 99287 CDS NP_460750.1 16765135 1253313 1893098..1893187 1 NC_003197.1 expressed during stationary phase; periplasmic protein 1893187 1253313 STM1794 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460750.1 1893098 D 99287 CDS NP_460751.1 16765136 1253314 1893531..1894856 1 NC_003197.1 glutamate dehydrogenase 1894856 1253314 STM1795 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamate dehydrogenase NP_460751.1 1893531 D 99287 CDS NP_460752.1 16765137 1253315 1895070..1896782 1 NC_003197.1 periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 1896782 treA 1253315 treA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 trehalase NP_460752.1 1895070 D 99287 CDS NP_460753.1 16765138 1253316 complement(1896845..1897099) 1 NC_003197.1 transglycosylase-associated protein 1897099 ymgE 1253316 ymgE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transglycosylase-associated protein NP_460753.1 1896845 R 99287 CDS NP_460754.1 16765139 1253317 1897268..1898002 1 NC_003197.1 Cyclic di-GMP binding protein; flagellar brake protein 1898002 ycgR 1253317 ycgR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar brake protein NP_460754.1 1897268 D 99287 CDS NP_460755.1 16765140 1253318 complement(1898016..1898627) 1 NC_003197.1 membrane-bound lytic murein transglycosylase A 1898627 emtA 1253318 emtA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane-bound lytic murein transglycosylase A NP_460755.1 1898016 R 99287 CDS NP_460756.1 16765141 1253319 1898798..1899712 1 NC_003197.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 1899712 ldcA 1253319 ldcA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L,D-carboxypeptidase A NP_460756.1 1898798 D 99287 CDS NP_460757.1 16765142 1253320 1899809..1901542 1 NC_003197.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; K(+)/H(+) antiporter 1901542 ycgO 1253320 ycgO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 K(+)/H(+) antiporter NP_460757.1 1899809 D 99287 CDS NP_460758.1 16765143 1253321 complement(1901605..1902675) 1 NC_003197.1 catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase 1902675 dadX 1253321 dadX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alanine racemase NP_460758.1 1901605 R 99287 CDS NP_460759.1 16765144 1253322 complement(1902689..1903987) 1 NC_003197.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 1903987 dadA 1253322 dadA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-amino acid dehydrogenase small subunit NP_460759.1 1902689 R 99287 CDS NP_460760.2 39546326 1253323 1904316..1905842 1 NC_003197.1 hypothetical protein 1905842 1253323 STM1804.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460760.2 1904316 D 99287 CDS NP_460761.1 16765146 1253324 complement(1905889..1906608) 1 NC_003197.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 1906608 fadR 1253324 fadR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fatty acid metabolism regulator NP_460761.1 1905889 R 99287 CDS NP_460762.1 16765147 1253325 1906828..1908372 1 NC_003197.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1908372 nhaB 1253325 nhaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sodium/proton antiporter NP_460762.1 1906828 D 99287 CDS NP_460763.1 16765148 1253326 1908514..1909044 1 NC_003197.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1909044 dsbB 1253326 dsbB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 disulfide bond formation protein B NP_460763.1 1908514 D 99287 CDS NP_460764.1 16765149 1253327 1909153..1909494 1 NC_003197.1 cytoplasmic protein 1909494 1253327 STM1808 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460764.1 1909153 D 99287 CDS NP_460765.1 16765150 1253328 complement(1909566..1909739) 1 NC_003197.1 hypothetical protein 1909739 1253328 STM1809 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460765.1 1909566 R 99287 CDS NP_460766.1 16765151 1253329 complement(1909931..1910068) 1 NC_003197.1 cytoplasmic protein 1910068 1253329 STM1810 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460766.1 1909931 R 99287 CDS NP_460767.2 161353596 1253330 complement(1910420..1910866) 1 NC_003197.1 hypothetical protein 1910866 1253330 STM1811 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460767.2 1910420 R 99287 CDS NP_460768.1 16765153 1253331 complement(1910959..1911618) 1 NC_003197.1 fumarylacetoacetate (FAA) hydrolase family protein 1911618 ycgM 1253331 ycgM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fumarylacetoacetate (FAA) hydrolase family protein NP_460768.1 1910959 R 99287 CDS NP_460769.1 16765154 1253332 complement(1911668..1912000) 1 NC_003197.1 hypothetical protein 1912000 1253332 STM1813 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460769.1 1911668 R 99287 CDS NP_460770.1 16765155 1253333 1912087..1912794 1 NC_003197.1 blocks the formation of polar Z-ring septums; septum formation inhibitor MinC 1912794 minC 1253333 minC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 septum formation inhibitor MinC NP_460770.1 1912087 D 99287 CDS NP_460771.1 16765156 1253334 1912818..1913630 1 NC_003197.1 ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; ATPase MinD 1913630 minD 1253334 minD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATPase MinD NP_460771.1 1912818 D 99287 CDS NP_460772.1 16765157 1253335 1913634..1913900 1 NC_003197.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1913900 minE 1253335 minE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division topological specificity factor MinE NP_460772.1 1913634 D 99287 CDS NP_460773.1 16765158 1253336 complement(1914022..1915149) 1 NC_003197.1 ribonuclease D 1915149 rnd 1253336 rnd Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonuclease D NP_460773.1 1914022 R 99287 CDS NP_460774.1 16765159 1253337 complement(1915222..1916907) 1 NC_003197.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1916907 fadD 1253337 fadD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 long-chain-fatty-acid--CoA ligase NP_460774.1 1915222 R 99287 CDS NP_460775.1 16765160 1253338 complement(1917112..1917693) 1 NC_003197.1 outer membrane protein 1917693 slp 1253338 slp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_460775.1 1917112 R 99287 CDS NP_460776.1 16765161 1253339 complement(1917765..1918460) 1 NC_003197.1 tRNA threonylcarbamoyladenosine biosynthesis protein TsaB 1918460 tsaB 1253339 tsaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA threonylcarbamoyladenosine biosynthesis protein TsaB NP_460776.1 1917765 R 99287 CDS NP_460777.1 16765162 1253340 complement(1918518..1920428) 1 NC_003197.1 DNA helicase 1920428 yoaA 1253340 yoaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA helicase NP_460777.1 1918518 R 99287 CDS NP_460778.1 16765163 1253341 1920559..1920903 1 NC_003197.1 translation initiation inhibitor 1920903 yoaB 1253341 yoaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 translation initiation inhibitor NP_460778.1 1920559 D 99287 CDS NP_460779.1 16765164 1253342 complement(1920909..1921088) 1 NC_003197.1 hypothetical protein in fadD-pabB intergenic region (SW:YOAH_SALTY); hypothetical protein 1921088 1253342 STM1823 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460779.1 1920909 R 99287 CDS NP_460780.1 16765165 1253343 1921169..1922533 1 NC_003197.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; aminodeoxychorismate synthase component 1 1922533 pabB 1253343 pabB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aminodeoxychorismate synthase component 1 NP_460780.1 1921169 D 99287 CDS NP_460781.1 16765166 1253344 1922537..1923115 1 NC_003197.1 hypothetical protein in pabB-sdaA intergenic region (SW:YEAB_SALTY); Nudix hydrolase NudL 1923115 nudL 1253344 nudL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Nudix hydrolase NudL NP_460781.1 1922537 D 99287 CDS NP_460782.1 16765167 1253345 1923379..1924743 1 NC_003197.1 L-serine deaminase I/L-threonine deaminase I 1924743 sdaA 1253345 sdaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-serine deaminase I/L-threonine deaminase I NP_460782.1 1923379 D 99287 CDS NP_460783.2 39546327 1253346 1924881..1926482 1 NC_003197.1 diguanylate cyclase/phosphodiesterase 1926482 1253346 STM1827.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diguanylate cyclase/phosphodiesterase NP_460783.2 1924881 D 99287 CDS NP_460784.1 16765169 1253347 complement(1926504..1928060) 1 NC_003197.1 inner membrane protein 1928060 yoaE 1253347 yoaE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460784.1 1926504 R 99287 CDS NP_460785.1 16765170 1253348 complement(1928048..1928383) 1 NC_003197.1 cytoplasmic protein 1928383 1253348 STM1829 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460785.1 1928048 R 99287 CDS NP_460786.1 16765171 1253349 1928533..1929501 1 NC_003197.1 PTS system mannose-specific transporter subunit IIAB 1929501 manX 1253349 manX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannose-specific transporter subunit IIAB NP_460786.1 1928533 D 99287 CDS NP_460787.1 16765172 1253350 1929554..1930354 1 NC_003197.1 PTS system mannose-specific transporter subunit IIC 1930354 manY 1253350 manY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannose-specific transporter subunit IIC NP_460787.1 1929554 D 99287 CDS NP_460788.1 16765173 1253351 1930358..1931218 1 NC_003197.1 phosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 1931218 manZ 1253351 manZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannose-specific transporter subunit IID NP_460788.1 1930358 D 99287 CDS NP_460789.1 16765174 1253352 1931276..1931746 1 NC_003197.1 hypothetical protein 1931746 1253352 STM1833 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460789.1 1931276 D 99287 CDS NP_460790.1 16765175 1253353 1932090..1932710 1 NC_003197.1 membrane protein YebN; manganese efflux pump MntP 1932710 mntP 1253353 mntP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 manganese efflux pump MntP NP_460790.1 1932090 D 99287 CDS NP_460791.1 16765176 1253354 complement(1932707..1933516) 1 NC_003197.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA m1G745 methyltransferase 1933516 rrmA 1253354 rrmA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 23S rRNA m1G745 methyltransferase NP_460791.1 1932707 R 99287 CDS NP_460792.1 16765177 1253355 complement(1933582..1935327) 1 NC_003197.1 penicillin-binding protein 3 1935327 1253355 STM1836 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 penicillin-binding protein 3 NP_460792.1 1933582 R 99287 CDS NP_460793.1 16765178 1253356 complement(1935547..1935756) 1 NC_003197.1 cold shock-like protein CspC (SW:CSPC_SALTY); multicopy suppresses mukB mutants; regulator; cold shock-like protein CspC 1935756 cspC 1253356 cspC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cold shock-like protein CspC NP_460793.1 1935547 R 99287 CDS NP_460794.1 16765179 1253357 complement(1935769..1935912) 1 NC_003197.1 cytoplasmic protein 1935912 yobF 1253357 yobF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460794.1 1935769 R 99287 CDS NP_460795.1 16765180 1253358 complement(1936561..1936848) 1 NC_003197.1 periplasmic protein; hypothetical protein 1936848 1253358 STM1839 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460795.1 1936561 R 99287 CDS NP_460796.1 16765181 1253359 complement(1936919..1937062) 1 NC_003197.1 PhoP/PhoQ regulator MgrB 1937062 mgrB 1253359 mgrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PhoP/PhoQ regulator MgrB NP_460796.1 1936919 R 99287 CDS NP_460797.1 16765182 1253360 1937220..1937459 1 NC_003197.1 hypothetical protein 1937459 1253360 STM1841 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460797.1 1937220 D 99287 CDS NP_460798.1 16765183 1253361 complement(1937671..1938462) 1 NC_003197.1 IclR family transcriptional repressor 1938462 kdgR 1253361 kdgR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 IclR family transcriptional repressor NP_460798.1 1937671 R 99287 CDS NP_460799.1 16765184 1253362 1938638..1940011 1 NC_003197.1 transporter 1940011 1253362 STM1843 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transporter NP_460799.1 1938638 D 99287 CDS NP_460800.1 16765185 1253363 complement(1940059..1940940) 1 NC_003197.1 metalloprotease; protease HtpX 1940940 htpX 1253363 htpX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protease HtpX NP_460800.1 1940059 R 99287 CDS NP_460801.1 16765186 1253364 complement(1941134..1943182) 1 NC_003197.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; tail-specific protease 1943182 prc 1253364 prc Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tail-specific protease NP_460801.1 1941134 R 99287 CDS NP_460802.1 16765187 1253365 complement(1943202..1943888) 1 NC_003197.1 affects solute and DNA transport through an unknown mechanism; ProP effector 1943888 proQ 1253365 proQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ProP effector NP_460802.1 1943202 R 99287 CDS NP_460803.1 16765188 1253366 complement(1943986..1944570) 1 NC_003197.1 free methionine-(R)-sulfoxide reductase 1944570 yebR 1253366 yebR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 free methionine-(R)-sulfoxide reductase NP_460803.1 1943986 R 99287 CDS NP_460804.1 16765189 1253367 1944612..1945895 1 NC_003197.1 inner membrane protein 1945895 yebS 1253367 yebS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460804.1 1944612 D 99287 CDS NP_460805.1 16765190 1253368 1945858..1948497 1 NC_003197.1 inner membrane protein 1948497 1253368 STM1849 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460805.1 1945858 D 99287 CDS NP_460806.1 16765191 1253369 1948575..1950014 1 NC_003197.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA small subunit methyltransferase F 1950014 rsmF 1253369 rsmF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA small subunit methyltransferase F NP_460806.1 1948575 D 99287 CDS NP_460807.1 16765192 1253370 1950129..1950368 1 NC_003197.1 cytoplasmic protein 1950368 1253370 STM1851 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460807.1 1950129 D 99287 CDS NP_460808.1 16765193 1253371 1950479..1950670 1 NC_003197.1 inner membrane lipoprotein 1950670 yebW 1253371 yebW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane lipoprotein NP_460808.1 1950479 D 99287 CDS NP_460809.1 16765194 1253372 complement(1950689..1951339) 1 NC_003197.1 Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine-protein phosphatase 1 1951339 pphA 1253372 pphA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 serine/threonine-protein phosphatase 1 NP_460809.1 1950689 R 99287 CDS NP_460810.1 16765195 1253373 complement(1951563..1951727) 1 NC_003197.1 inner membrane protein 1951727 1253373 STM1854 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460810.1 1951563 R 99287 CDS NP_460811.1 16765196 1253374 complement(1952012..1952734) 1 NC_003197.1 SopE2; invasion-associated protein; secreted by SPI-1; interacts with chaperone InvB; guanine nucleotide exchange factor for Cdc42; activates Cdc42 which results in actin cytoskeleton rearrangements and internalization; guanine nucleotide exchange factor sopE2 1952734 sopE2 1253374 sopE2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 guanine nucleotide exchange factor sopE2 NP_460811.1 1952012 R 99287 CDS NP_460812.1 16765197 1253375 1953418..1953813 1 NC_003197.1 cytoplasmic protein 1953813 1253375 STM1856 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460812.1 1953418 D 99287 CDS NP_945162.1 39546328 2673765 1954143..1954619 1 NC_003197.1 hypothetical protein 1954619 2673765 STM1856.1N Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945162.1 1954143 D 99287 CDS NP_460813.1 16765198 1253376 complement(1955007..1955426) 1 NC_003197.1 acetyltransferase 1955426 1253376 STM1857 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyltransferase NP_460813.1 1955007 R 99287 CDS NP_460814.1 16765199 1253377 1955796..1956065 1 NC_003197.1 cytoplasmic protein 1956065 1253377 STM1858 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460814.1 1955796 D 99287 CDS NP_460815.2 39546329 1253378 1956198..1956371 1 NC_003197.1 cytoplasmic protein 1956371 1253378 STM1859 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460815.2 1956198 D 99287 CDS NP_460818.1 16765203 1253381 1959507..1960421 1 NC_003197.1 PagO protein (SW:PAGO_SALTY); PhoPQ-activated gene; integral membrane protein 1960421 pagO 1253381 pagO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integral membrane protein NP_460818.1 1959507 D 99287 CDS NP_460819.1 16765204 1253382 1960554..1960712 1 NC_003197.1 inner membrane protein 1960712 1253382 STM1863 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460819.1 1960554 D 99287 CDS NP_460820.1 16765205 1253383 1960722..1961336 1 NC_003197.1 inner membrane protein 1961336 1253383 STM1864 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460820.1 1960722 D 99287 CDS NP_460822.1 16765207 1253386 1963179..1963379 1 NC_003197.1 PhoPQ-activated gene; PhoPQ-activated protein 1963379 pagK 1253386 pagK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PhoPQ-activated protein NP_460822.1 1963179 D 99287 CDS NP_460823.1 16765208 1253387 complement(1963476..1964357) 1 NC_003197.1 phage tail assembly protein; phage-tail assembly-like protein 1964357 mig-3 1253387 mig-3 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage-tail assembly-like protein NP_460823.1 1963476 R 99287 CDS NP_945163.1 39546330 2673772 complement(1964512..1964775) 1 NC_003197.1 hypothetical protein 1964775 2673772 STM1868.1N Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945163.1 1964512 R 99287 CDS NP_460824.1 16765209 1253388 1965083..1965250 1 NC_003197.1 lytic enzyme 1965250 1253388 STM1868A Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lytic enzyme NP_460824.1 1965083 D 99287 CDS NP_460825.1 16765210 1253389 complement(1965507..1966040) 1 NC_003197.1 phage-tail assembly-like protein 1966040 1253389 STM1869 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage-tail assembly-like protein NP_460825.1 1965507 R 99287 CDS NP_460826.1 16765211 1253390 complement(1966094..1966381) 1 NC_003197.1 hypothetical protein 1966381 1253390 STM1869A Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460826.1 1966094 R 99287 CDS NP_460827.1 16765212 1253391 1966514..1967008 1 NC_003197.1 hypothetical protein 1967008 1253391 STM1870 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460827.1 1966514 D 99287 CDS NP_460829.1 16765214 1253393 complement(1968119..1968238) 1 NC_003197.1 cytoplasmic protein 1968238 1253393 STM1872 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460829.1 1968119 R 99287 CDS NP_460830.1 16765215 1253394 complement(1968296..1968649) 1 NC_003197.1 periplasmic protein; hypothetical protein 1968649 1253394 STM1873 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460830.1 1968296 R 99287 CDS NP_460831.1 16765216 1253395 complement(1968666..1969541) 1 NC_003197.1 inner membrane protein 1969541 1253395 STM1874 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460831.1 1968666 R 99287 CDS NP_460832.1 16765217 1253396 complement(1969542..1969916) 1 NC_003197.1 hypothetical protein 1969916 1253396 STM1875 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460832.1 1969542 R 99287 CDS NP_460833.1 16765218 1253397 1970054..1970284 1 NC_003197.1 DNA polymerase III subunit theta 1970284 holE 1253397 holE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase III subunit theta NP_460833.1 1970054 D 99287 CDS NP_460834.1 16765219 1253398 1970392..1971048 1 NC_003197.1 amidohydrolase 1971048 1253398 STM1877 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amidohydrolase NP_460834.1 1970392 D 99287 CDS NP_460835.1 16765220 1253399 1971072..1971770 1 NC_003197.1 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 1971770 exoX 1253399 exoX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 exodeoxyribonuclease X NP_460835.1 1971072 D 99287 CDS NP_460836.1 16765221 1253400 complement(1971805..1973856) 1 NC_003197.1 PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 1973856 ptrB 1253400 ptrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protease 2 NP_460836.1 1971805 R 99287 CDS NP_460837.1 16765222 1253401 complement(1974069..1974728) 1 NC_003197.1 inner membrane protein 1974728 yebE 1253401 yebE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460837.1 1974069 R 99287 CDS NP_460838.1 16765223 1253402 complement(1974822..1975175) 1 NC_003197.1 secreted protein; unknown function; hypothetical protein 1975175 1253402 STM1881 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460838.1 1974822 R 99287 CDS NP_460839.1 16765224 1253403 complement(1975243..1975533) 1 NC_003197.1 in SOS regulon; dependent on cyclic AMP and H-NS; DNA damage-inducible protein 1975533 yebG 1253403 yebG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA damage-inducible protein NP_460839.1 1975243 R 99287 CDS NP_460840.1 16765225 1253404 1975664..1976842 1 NC_003197.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1976842 purT 1253404 purT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoribosylglycinamide formyltransferase 2 NP_460840.1 1975664 D 99287 CDS NP_460841.1 16765226 1253405 complement(1976942..1977583) 1 NC_003197.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1977583 eda 1253405 eda Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase NP_460841.1 1976942 R 99287 CDS NP_460842.1 16765227 1253406 complement(1977621..1979432) 1 NC_003197.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1979432 edd 1253406 edd Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphogluconate dehydratase NP_460842.1 1977621 R 99287 CDS NP_460843.1 16765228 1253407 complement(1979667..1981142) 1 NC_003197.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1981142 zwf 1253407 zwf Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucose-6-phosphate 1-dehydrogenase NP_460843.1 1979667 R 99287 CDS NP_460844.1 16765229 1253408 1981484..1982353 1 NC_003197.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 1982353 yebK 1253408 yebK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional regulator HexR NP_460844.1 1981484 D 99287 CDS NP_460845.1 16765230 1253409 1982477..1983919 1 NC_003197.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1983919 pykA 1253409 pykA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate kinase NP_460845.1 1982477 D 99287 CDS NP_460846.1 16765231 1253410 complement(1983992..1984963) 1 NC_003197.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; myristoyl (ACP)-dependent acyltransferase 1984963 msbB 1253410 msbB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 myristoyl (ACP)-dependent acyltransferase NP_460846.1 1983992 R 99287 CDS NP_460847.1 16765232 1253411 complement(1985080..1986399) 1 NC_003197.1 murein DD-endopeptidase 1986399 yebA 1253411 yebA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 murein DD-endopeptidase NP_460847.1 1985080 R 99287 CDS NP_460848.2 161353595 1253412 complement(1986415..1987359) 1 NC_003197.1 involved in transport of zinc(II) with ZnuA and C; zinc ABC transporter substrate-binding protein ZnuA 1987359 znuA 1253412 znuA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 zinc ABC transporter substrate-binding protein ZnuA NP_460848.2 1986415 R 99287 CDS NP_460849.2 39546331 1253413 1987438..1988193 1 NC_003197.1 involved in transport of zinc(II) with ZnuA and C; zinc ABC transporter ATP-binding protein ZnuC 1988193 znuC 1253413 znuC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 zinc ABC transporter ATP-binding protein ZnuC NP_460849.2 1987438 D 99287 CDS NP_460850.1 16765235 1253414 1988190..1988975 1 NC_003197.1 involved in transport of zinc(II) with ZnuA and C; zinc ABC transporter permease ZnuB 1988975 znuB 1253414 znuB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 zinc ABC transporter permease ZnuB NP_460850.1 1988190 D 99287 CDS NP_460851.1 16765236 1253415 complement(1989054..1990064) 1 NC_003197.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction ATP-dependent DNA helicase RuvB 1990064 ruvB 1253415 ruvB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Holliday junction ATP-dependent DNA helicase RuvB NP_460851.1 1989054 R 99287 CDS NP_460852.1 16765237 1253416 complement(1990073..1990684) 1 NC_003197.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction ATP-dependent DNA helicase RuvA 1990684 ruvA 1253416 ruvA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Holliday junction ATP-dependent DNA helicase RuvA NP_460852.1 1990073 R 99287 CDS NP_460853.1 16765238 1253417 1991104..1992000 1 NC_003197.1 cytoplasmic protein 1992000 1253417 STM1896 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460853.1 1991104 D 99287 CDS NP_460854.1 16765239 1253418 1992627..1993226 1 NC_003197.1 periplasmic protein 1993226 yebB 1253418 yebB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460854.1 1992627 D 99287 CDS NP_460855.1 16765240 1253419 complement(1993228..1993749) 1 NC_003197.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; crossover junction endodeoxyribonuclease RuvC 1993749 ruvC 1253419 ruvC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 crossover junction endodeoxyribonuclease RuvC NP_460855.1 1993228 R 99287 CDS NP_460856.1 16765241 1253420 complement(1993786..1994526) 1 NC_003197.1 transcriptional regulator 1994526 yebC 1253420 yebC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_460856.1 1993786 R 99287 CDS NP_460857.1 16765242 1253421 complement(1994556..1995008) 1 NC_003197.1 converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase 1995008 ntpA 1253421 ntpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dATP pyrophosphohydrolase NP_460857.1 1994556 R 99287 CDS NP_460858.1 16765243 1253422 complement(1995111..1996883) 1 NC_003197.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartate--tRNA ligase 1996883 aspS 1253422 aspS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aspartate--tRNA ligase NP_460858.1 1995111 R 99287 CDS NP_460859.1 16765244 1253423 1997208..1997774 1 NC_003197.1 isochorismatase 1997774 yecD 1253423 yecD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 isochorismatase NP_460859.1 1997208 D 99287 CDS NP_460860.1 16765245 1253424 1997771..1998589 1 NC_003197.1 cytoplasmic protein 1998589 yecE 1253424 yecE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460860.1 1997771 D 99287 CDS NP_460861.1 16765246 1253425 1998642..1999037 1 NC_003197.1 inner membrane protein 1999037 yecN 1253425 yecN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460861.1 1998642 D 99287 CDS NP_460862.1 16765247 1253426 1999078..1999821 1 NC_003197.1 tRNA (cmo5U34)-methyltransferase 1999821 yecO 1253426 yecO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA (cmo5U34)-methyltransferase NP_460862.1 1999078 D 99287 CDS NP_460863.1 16765248 1253427 1999818..2000789 1 NC_003197.1 tRNA (mo5U34)-methyltransferase 2000789 yecP 1253427 yecP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA (mo5U34)-methyltransferase NP_460863.1 1999818 D 99287 CDS NP_460864.1 16765249 1253428 complement(2001025..2001771) 1 NC_003197.1 copper homeostasis protein CutC 2001771 cutC 1253428 cutC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 copper homeostasis protein CutC NP_460864.1 2001025 R 99287 CDS NP_460865.1 16765250 1253429 complement(2001791..2002360) 1 NC_003197.1 cytoplasmic protein 2002360 yecM 1253429 yecM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460865.1 2001791 R 99287 CDS NP_460866.1 16765251 1253430 2002597..2004330 1 NC_003197.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginine--tRNA ligase 2004330 argS 1253430 argS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arginine--tRNA ligase NP_460866.1 2002597 D 99287 CDS NP_460867.1 16765252 1253431 2004519..2006390 1 NC_003197.1 penicillin-binding protein 2; PBP-2 (SW:PBP2_SALTY); penicillin-binding protein 2006390 1253431 STM1910 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 penicillin-binding protein NP_460867.1 2004519 D 99287 CDS NP_460868.1 16765253 1253432 complement(2006444..2007583) 1 NC_003197.1 cytoplasmic protein 2007583 1253432 STM1911 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460868.1 2006444 R 99287 CDS NP_460869.1 16765254 1253433 complement(2007820..2008212) 1 NC_003197.1 flagellar protein FlhE (SW:FLHE_SALTY); flagellar protein FlhE 2008212 flhE 1253433 flhE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar protein FlhE NP_460869.1 2007820 R 99287 CDS NP_460870.1 16765255 1253434 complement(2008212..2010290) 1 NC_003197.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 2010290 flhA 1253434 flhA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar biosynthesis protein FlhA NP_460870.1 2008212 R 99287 CDS NP_460871.1 16765256 1253435 complement(2010283..2011434) 1 NC_003197.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 2011434 flhB 1253435 flhB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar biosynthesis protein FlhB NP_460871.1 2010283 R 99287 CDS NP_460872.1 16765257 1253436 complement(2011628..2012272) 1 NC_003197.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; protein phosphatase CheZ 2012272 cheZ 1253436 cheZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protein phosphatase CheZ NP_460872.1 2011628 R 99287 CDS NP_460873.1 16765258 1253437 complement(2012283..2012672) 1 NC_003197.1 chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; chemotaxis regulatory protein CheY 2012672 cheY 1253437 cheY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chemotaxis regulatory protein CheY NP_460873.1 2012283 R 99287 CDS NP_460874.1 16765259 1253438 complement(2012690..2013739) 1 NC_003197.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis response regulator protein-glutamate methylesterase 2013739 cheB 1253438 cheB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chemotaxis response regulator protein-glutamate methylesterase NP_460874.1 2012690 R 99287 CDS NP_460875.1 16765260 1253439 complement(2013736..2014602) 1 NC_003197.1 methylates the MCP; chemotaxis protein methyltransferase 2014602 cheR 1253439 cheR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chemotaxis protein methyltransferase NP_460875.1 2013736 R 99287 CDS NP_460876.1 16765261 1253440 complement(2014756..2016417) 1 NC_003197.1 methyl-accepting chemotaxis protein II; MCP-II (SW:MCP2_SALTY); aspartate sensor-receptor; methyl accepting chemotaxis protein II 2016417 cheM 1253440 cheM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methyl accepting chemotaxis protein II NP_460876.1 2014756 R 99287 CDS NP_460877.1 16765262 1253441 complement(2016654..2017157) 1 NC_003197.1 chemotaxis protein CheW (SW:CHEW_SALTY); regulation; couples CheA histidine kinase to transducers; chemotaxis protein CheW 2017157 cheW 1253441 cheW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chemotaxis protein CheW NP_460877.1 2016654 R 99287 CDS NP_460878.1 16765263 1253442 complement(2017178..2019193) 1 NC_003197.1 chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA 2019193 cheA 1253442 cheA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chemotaxis protein CheA NP_460878.1 2017178 R 99287 CDS NP_460879.1 16765264 1253443 complement(2019198..2020127) 1 NC_003197.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; motility protein B 2020127 motB 1253443 motB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 motility protein B NP_460879.1 2019198 R 99287 CDS NP_460880.1 16765265 1253444 complement(2020124..2021011) 1 NC_003197.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; motility protein protein A 2021011 motA 1253444 motA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 motility protein protein A NP_460880.1 2020124 R 99287 CDS NP_460881.2 39546332 1253445 complement(2021136..2021714) 1 NC_003197.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional regulator FlhC 2021714 flhC 1253445 flhC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator FlhC NP_460881.2 2021136 R 99287 CDS NP_460882.1 16765267 1253446 complement(2021717..2022067) 1 NC_003197.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional regulator FlhD 2022067 flhD 1253446 flhD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator FlhD NP_460882.1 2021717 R 99287 CDS NP_460884.1 16765269 1253448 2022854..2023282 1 NC_003197.1 ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein C 2023282 yecG 1253448 yecG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 universal stress protein C NP_460884.1 2022854 D 99287 CDS NP_460885.1 16765270 1253449 complement(2023300..2024721) 1 NC_003197.1 alpha,alpha-trehalose-phosphate synthase 2024721 otsA 1253449 otsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alpha,alpha-trehalose-phosphate synthase NP_460885.1 2023300 R 99287 CDS NP_460886.1 16765271 1253450 complement(2024696..2025499) 1 NC_003197.1 biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-phosphate phosphatase 2025499 otsB 1253450 otsB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 trehalose-phosphate phosphatase NP_460886.1 2024696 R 99287 CDS NP_460887.1 16765272 1253452 complement(2026132..2026689) 1 NC_003197.1 intracellular protease/amidase 2026689 araH 1253452 araH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 intracellular protease/amidase NP_460887.1 2026132 R 99287 CDS NP_460888.1 16765273 1253453 2027240..2027743 1 NC_003197.1 ferritin-like protein 2027743 ftnB 1253453 ftnB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferritin-like protein NP_460888.1 2027240 D 99287 CDS NP_460889.1 16765274 1253454 complement(2027922..2028560) 1 NC_003197.1 hypothetical protein 2028560 1253454 STM1933 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460889.1 2027922 R 99287 CDS NP_460890.1 16765275 1253455 2028816..2029151 1 NC_003197.1 outer membrane lipoprotein 2029151 1253455 STM1934 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_460890.1 2028816 D 99287 CDS NP_460891.1 16765276 1253456 2029391..2029888 1 NC_003197.1 cytoplasmic iron storage protein; ferritin 2029888 ftn 1253456 ftn Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferritin NP_460891.1 2029391 D 99287 CDS NP_460892.1 16765277 1253457 complement(2029934..2030173) 1 NC_003197.1 cytoplasmic protein 2030173 yecH 1253457 yecH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460892.1 2029934 R 99287 CDS NP_460893.1 16765278 1253458 2030400..2031611 1 NC_003197.1 HAAAP family tyrosine-specific transport protein 2031611 tyrP 1253458 tyrP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HAAAP family tyrosine-specific transport protein NP_460893.1 2030400 D 99287 CDS NP_460894.1 16765279 1253459 complement(2031686..2032351) 1 NC_003197.1 metal-binding protein 2032351 yecA 1253459 yecA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 metal-binding protein NP_460894.1 2031686 R 99287 CDS NP_460895.1 16765280 1253460 complement(2032589..2032915) 1 NC_003197.1 glucose-6-phosphate dehydrogenase 2032915 1253460 STM1939 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucose-6-phosphate dehydrogenase NP_460895.1 2032589 R 99287 CDS NP_460896.1 16765281 1253461 complement(2033128..2034567) 1 NC_003197.1 cell wall-associated hydrolase 2034567 1253461 STM1940 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell wall-associated hydrolase NP_460896.1 2033128 R 99287 CDS NP_460897.1 16765282 1253462 complement(2034780..2035112) 1 NC_003197.1 inner membrane protein 2035112 1253462 STM1941 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460897.1 2034780 R 99287 CDS NP_460898.1 16765283 1253466 complement(2035813..2036361) 1 NC_003197.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2036361 pgsA 1253466 pgsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase NP_460898.1 2035813 R 99287 CDS NP_460899.1 16765284 1253467 complement(2036418..2038250) 1 NC_003197.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2038250 uvrC 1253467 uvrC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 excinuclease ABC subunit C NP_460899.1 2036418 R 99287 CDS NP_460900.1 16765285 1253468 complement(2038247..2038903) 1 NC_003197.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; LuxR/UhpA family response regulator 2038903 uvrY 1253468 uvrY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LuxR/UhpA family response regulator NP_460900.1 2038247 R 99287 CDS NP_460902.1 16765287 1253470 2039367..2039591 1 NC_003197.1 cytoplasmic protein 2039591 yecF 1253470 yecF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460902.1 2039367 D 99287 CDS NP_460903.1 16765288 1253471 complement(2039658..2040380) 1 NC_003197.1 regulates genes involved in cell division; ftsQAZ ranscriptional regulator 2040380 sdiA 1253471 sdiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ftsQAZ ranscriptional regulator NP_460903.1 2039658 R 99287 CDS NP_460904.1 16765289 1253472 complement(2040612..2041364) 1 NC_003197.1 amino-acid ABC transporter ATP-binding protein 2041364 yecC 1253472 yecC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amino-acid ABC transporter ATP-binding protein NP_460904.1 2040612 R 99287 CDS NP_460905.1 16765290 1253473 complement(2041361..2042029) 1 NC_003197.1 amino acid ABC transporter permease 2042029 yecS 1253473 yecS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amino acid ABC transporter permease NP_460905.1 2041361 R 99287 CDS NP_460906.1 16765291 1253474 complement(2042050..2043036) 1 NC_003197.1 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 2043036 yedO 1253474 yedO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-cysteine desulfhydrase NP_460906.1 2042050 R 99287 CDS NP_460907.1 16765292 1253475 complement(2043190..2043990) 1 NC_003197.1 amino-acid ABC transporter substrate-binding protein 2043990 fliY 1253475 fliY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amino-acid ABC transporter substrate-binding protein NP_460907.1 2043190 R 99287 CDS NP_460908.1 16765293 1253476 complement(2044137..2044688) 1 NC_003197.1 expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence; flagella biosynthesis protein FliZ 2044688 fliZ 1253476 fliZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagella biosynthesis protein FliZ NP_460908.1 2044137 R 99287 CDS NP_460909.1 16765294 1253477 complement(2044747..2045466) 1 NC_003197.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; RNA polymerase sigma factor FliA 2045466 fliA 1253477 fliA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNA polymerase sigma factor FliA NP_460909.1 2044747 R 99287 CDS NP_460910.2 39980854 1253478 complement(2045735..2046244) 1 NC_003197.1 transposase for insertion sequence element is200 (SW:T200_SALTY); insertion sequence element IS200 transposase 2046244 tnpA_2 1253478 tnpA_2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 insertion sequence element IS200 transposase NP_460910.2 2045735 R 99287 CDS NP_460911.1 16765296 1253479 complement(2046374..2047579) 1 NC_003197.1 N-methylation of lysine residues in flagellin (SW:FLIB_SALTY); lysine-N-methylase 2047579 fliB 1253479 fliB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lysine-N-methylase NP_460911.1 2046374 R 99287 CDS NP_460912.1 16765297 1253480 complement(2047658..2049145) 1 NC_003197.1 structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; flagellin 2049145 fliC 1253480 fliC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellin NP_460912.1 2047658 R 99287 CDS NP_460913.1 16765298 1253481 2049402..2050805 1 NC_003197.1 involved in flagellin assembly; flagellar hook-associated protein 2 2050805 fliD 1253481 fliD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar hook-associated protein 2 NP_460913.1 2049402 D 99287 CDS NP_460914.1 16765299 1253482 2050820..2051227 1 NC_003197.1 flagellin specific chaperone; flagellar protein FliS 2051227 fliS 1253482 fliS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar protein FliS NP_460914.1 2050820 D 99287 CDS NP_460915.1 16765300 1253483 2051227..2051595 1 NC_003197.1 binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar protein FliT 2051595 fliT 1253483 fliT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar protein FliT NP_460915.1 2051227 D 99287 CDS NP_460916.1 16765301 1253484 2051667..2053151 1 NC_003197.1 converts 1,4-alpha-D-glucans to maltodextrin; cytoplasmic alpha-amylase 2053151 amyA 1253484 amyA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic alpha-amylase NP_460916.1 2051667 D 99287 CDS NP_460917.1 16765302 1253485 complement(2053191..2053616) 1 NC_003197.1 15.5 kDa protein in amyA-fliE intergenic region (SW:YEDD_SALTY); lipoprotein 2053616 yedD 1253485 yedD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein NP_460917.1 2053191 R 99287 CDS NP_460918.2 308065962 1253486 2053802..2055007 1 NC_003197.1 hypothetical 44.2 kDa protein in amyA-fliE intergenic region (SW:YEDE_SALTY); component of transport system; inner membrane protein 2055007 yedE 1253486 yedE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460918.2 2053802 D 99287 CDS NP_460919.1 16765304 1253487 2055004..2055237 1 NC_003197.1 hypothetical 8.6 kDa protein in amyA-fliE intergenic region; ORF 9 (SW:YEDF_ECOLI); hypothetical protein 2055237 1253487 STM1966 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460919.1 2055004 D 99287 CDS YP_006892397.1 409994421 13865721 2055502..2055888 1 NC_003197.1 hypothetical protein 2055888 13865721 STM05320 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892397.1 2055502 D 99287 CDS NP_460921.1 16765306 1253489 complement(2056008..2056322) 1 NC_003197.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body complex protein FliE 2056322 fliE 1253489 fliE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar hook-basal body complex protein FliE NP_460921.1 2056008 R 99287 CDS NP_460922.1 16765307 1253490 2056539..2058221 1 NC_003197.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein FliF 2058221 fliF 1253490 fliF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar MS-ring protein FliF NP_460922.1 2056539 D 99287 CDS NP_460923.1 16765308 1253491 2058214..2059209 1 NC_003197.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliG 2059209 fliG 1253491 fliG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar motor switch protein FliG NP_460923.1 2058214 D 99287 CDS NP_460924.1 16765309 1253492 2059202..2059909 1 NC_003197.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein FliH 2059909 fliH 1253492 fliH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar assembly protein FliH NP_460924.1 2059202 D 99287 CDS NP_460925.1 16765310 1253493 2059909..2061279 1 NC_003197.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase FliI 2061279 fliI 1253493 fliI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellum-specific ATP synthase FliI NP_460925.1 2059909 D 99287 CDS NP_460926.1 16765311 1253494 2061301..2061744 1 NC_003197.1 rod/hook and filament chaperone; flagellar protein FliJ 2061744 fliJ 1253494 fliJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar protein FliJ NP_460926.1 2061301 D 99287 CDS NP_460927.1 16765312 1253495 2061741..2062958 1 NC_003197.1 flagellar hook-length control protein (SW:FLIK_SALTY); flagellar hook-length control protein FliK 2062958 fliK 1253495 fliK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar hook-length control protein FliK NP_460927.1 2061741 D 99287 CDS NP_460928.1 16765313 1253496 2063063..2063530 1 NC_003197.1 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 2063530 fliL 1253496 fliL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar basal body-associated protein FliL NP_460928.1 2063063 D 99287 CDS NP_460929.1 16765314 1253497 2063535..2064539 1 NC_003197.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2064539 fliM 1253497 fliM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar motor switch protein FliM NP_460929.1 2063535 D 99287 CDS NP_460930.1 16765315 1253498 2064536..2064949 1 NC_003197.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 2064949 fliN 1253498 fliN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar motor switch protein FliN NP_460930.1 2064536 D 99287 CDS NP_460931.2 308065961 1253499 2064952..2065326 1 NC_003197.1 with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus; flagellar biosynthesis protein FliO 2065326 fliO 1253499 fliO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar biosynthesis protein FliO NP_460931.2 2064952 D 99287 CDS NP_460932.1 16765317 1253500 2065326..2066063 1 NC_003197.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2066063 fliP 1253500 fliP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar biosynthesis protein FliP NP_460932.1 2065326 D 99287 CDS NP_460933.1 16765318 1253501 2066073..2066342 1 NC_003197.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 2066342 fliQ 1253501 fliQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar biosynthesis protein FliQ NP_460933.1 2066073 D 99287 CDS NP_460934.1 16765319 1253502 2066351..2067145 1 NC_003197.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 2067145 fliR 1253502 fliR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagellar biosynthesis protein FliR NP_460934.1 2066351 D 99287 CDS NP_460935.1 16765320 1253503 2067427..2068050 1 NC_003197.1 positive transcriptional regulator of capsular/exo-polysaccharide synthesis; LuxR/UhpA family (SW:RCSA_SALTY); transcriptional regulator RcsA 2068050 rcsA 1253503 rcsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator RcsA NP_460935.1 2067427 D 99287 CDS NP_951051.1 39980855 1253504 complement(2068089..2068283) 1 NC_003197.1 downstream region B; regulated by DsrA and HNS, under control of RpoS; protein DsrB 2068283 dsrB 1253504 dsrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protein DsrB NP_951051.1 2068089 R 99287 CDS NP_460936.1 16765321 1253505 2068412..2068639 1 NC_003197.1 cytoplasmic protein 2068639 yodD 1253505 yodD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460936.1 2068412 D 99287 CDS NP_460937.1 16765322 1253507 2068949..2069764 1 NC_003197.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2069764 yedP 1253507 yedP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mannosyl-3-phosphoglycerate phosphatase NP_460937.1 2068949 D 99287 CDS NP_460938.1 16765323 1253508 complement(2069743..2071455) 1 NC_003197.1 inner membrane protein 2071455 1253508 STM1987 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460938.1 2069743 R 99287 CDS NP_460939.2 39546333 1253509 complement(2071620..2071838) 1 NC_003197.1 hypothetical protein 2071838 1253509 STM1988.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460939.2 2071620 R 99287 CDS NP_460940.1 16765325 1253510 complement(2071882..2072793) 1 NC_003197.1 inner membrane protein 2072793 yedI 1253510 yedI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460940.1 2071882 R 99287 CDS NP_460941.1 16765326 1253511 2072969..2073889 1 NC_003197.1 amino acid exporter 2073889 yedA 1253511 yedA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amino acid exporter NP_460941.1 2072969 D 99287 CDS NP_460942.1 16765327 1253512 complement(2073878..2074348) 1 NC_003197.1 DNA mismatch endonuclease 2074348 vsr 1253512 vsr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA mismatch endonuclease NP_460942.1 2073878 R 99287 CDS NP_460943.1 16765328 1253513 complement(2074329..2075759) 1 NC_003197.1 DNA cytosine methylase 2075759 dcm 1253513 dcm Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA cytosine methylase NP_460943.1 2074329 R 99287 CDS NP_460944.1 16765329 1253514 complement(2075833..2076528) 1 NC_003197.1 hydrolase 2076528 yedJ 1253514 yedJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrolase NP_460944.1 2075833 R 99287 CDS NP_460945.1 16765330 1253515 complement(2076620..2076919) 1 NC_003197.1 inner membrane protein 2076919 1253515 STM1994 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_460945.1 2076620 R 99287 CDS NP_460946.1 16765331 1253516 2077569..2078765 1 NC_003197.1 porin 2078765 ompS 1253516 ompS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 porin NP_460946.1 2077569 D 99287 CDS NP_460947.1 16765332 1253517 complement(2079225..2079437) 1 NC_003197.1 cold-shock protein 2079437 cspB 1253517 cspB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cold-shock protein NP_460947.1 2079225 R 99287 CDS NP_460948.1 16765333 1253518 complement(2079892..2081160) 1 NC_003197.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 2081160 umuC 1253518 umuC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase V subunit UmuC NP_460948.1 2079892 R 99287 CDS NP_460949.1 16765334 1253519 complement(2081163..2081582) 1 NC_003197.1 binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuD 2081582 umuD 1253519 umuD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase V subunit UmuD NP_460949.1 2081163 R 99287 CDS NP_460950.1 16765335 1253520 complement(2081709..2081870) 1 NC_003197.1 cytoplasmic protein 2081870 1253520 STM1999 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460950.1 2081709 R 99287 CDS NP_460951.1 16765336 1253522 2082351..2083148 1 NC_003197.1 Mlc titration factor A 2083148 mtfA 1253522 mtfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Mlc titration factor A NP_460951.1 2082351 D 99287 CDS NP_460952.1 16765337 1253526 2084458..2084931 1 NC_003197.1 endoprotease 2084931 1253526 STM2005 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 endoprotease NP_460952.1 2084458 D 99287 CDS NP_460954.1 16765339 1253528 2086921..2088615 1 NC_003197.1 contains TPR repeats; hypothetical protein 2088615 1253528 STM2007 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_460954.1 2086921 D 99287 CDS NP_460955.1 16765340 1253529 2088672..2090402 1 NC_003197.1 periplasmic protein 2090402 1253529 STM2008 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_460955.1 2088672 D 99287 CDS YP_006892398.1 409994422 13865705 2090612..2090785 1 NC_003197.1 hypothetical protein 2090785 13865705 STM05350 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892398.1 2090612 D 99287 CDS NP_460956.1 16765341 1253530 complement(2091307..2092761) 1 NC_003197.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 2092761 amn 1253530 amn Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AMP nucleosidase NP_460956.1 2091307 R 99287 CDS NP_460958.1 16765343 1253532 complement(2092957..2093283) 1 NC_003197.1 cytoplasmic protein 2093283 1253532 STM2011 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_460958.1 2092957 R 99287 CDS NP_951052.1 39980856 2673719 2093989..2094156 1 NC_003197.1 hypothetical protein 2094156 2673719 STM2011.1n Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_951052.1 2093989 D 99287 CDS NP_460959.1 16765344 1253534 complement(2094377..2095834) 1 NC_003197.1 MATE family; MATE family transport protein 2095834 yeeO 1253534 yeeO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MATE family transport protein NP_460959.1 2094377 R 99287 CDS NP_460960.1 16765345 1253536 complement(2096296..2097225) 1 NC_003197.1 L,D-transpeptidase ErfK/SrfK 2097225 erfK 1253536 erfK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L,D-transpeptidase ErfK/SrfK NP_460960.1 2096296 R 99287 CDS NP_460961.1 16765346 1253537 complement(2097303..2098373) 1 NC_003197.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2098373 cobT 1253537 cobT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase NP_460961.1 2097303 R 99287 CDS NP_460962.1 16765347 1253538 complement(2098400..2099143) 1 NC_003197.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 2099143 cobS 1253538 cobS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalamin synthase NP_460962.1 2098400 R 99287 CDS NP_460963.1 16765348 1253539 complement(2099140..2099685) 1 NC_003197.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 2099685 cobU 1253539 cobU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase NP_460963.1 2099140 R 99287 CDS NP_460964.1 16765349 1253540 complement(2099682..2101202) 1 NC_003197.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2101202 cbiP 1253540 cbiP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobyric acid synthase NP_460964.1 2099682 R 99287 CDS NP_460965.1 16765350 1253541 complement(2101199..2102014) 1 NC_003197.1 with CbiNQ forms the ABC transporter for cobalt import; cobalt ABC transporter ATP-binding protein CbiO 2102014 cbiO 1253541 cbiO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalt ABC transporter ATP-binding protein CbiO NP_460965.1 2101199 R 99287 CDS NP_460966.1 16765351 1253542 complement(2102023..2102700) 1 NC_003197.1 cobalt transport protein CbiQ (SW:CBIQ_SALTY); cobalt ABC transporter permease CbiQ 2102700 cbiQ 1253542 cbiQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalt ABC transporter permease CbiQ NP_460966.1 2102023 R 99287 CDS NP_460967.1 16765352 1253543 complement(2102687..2102968) 1 NC_003197.1 periplasmic cobalt binding component of the cobalt transport system; cobalt ABC transporter substrate-binding protein CbiN 2102968 cbiN 1253543 cbiN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalt ABC transporter substrate-binding protein CbiN NP_460967.1 2102687 R 99287 CDS NP_460968.2 161353594 1253544 complement(2102970..2103617) 1 NC_003197.1 catalyzes the ATP-dependent transport of cobalt; cobalt ABC transporter substrate-binding protein CbiM 2103617 cbiM 1253544 cbiM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalt ABC transporter substrate-binding protein CbiM NP_460968.2 2102970 R 99287 CDS NP_460969.1 16765354 1253545 complement(2103704..2104417) 1 NC_003197.1 catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase 2104417 cbiL 1253545 cbiL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalt-precorrin-2 C(20)-methyltransferase NP_460969.1 2103704 R 99287 CDS NP_460970.1 16765355 1253546 complement(2104414..2105208) 1 NC_003197.1 cobalt chelatase (SW:CBIK_SALTY); sirohydrochlorin cobaltochelatase 2105208 cbiK 1253546 cbiK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sirohydrochlorin cobaltochelatase NP_460970.1 2104414 R 99287 CDS NP_460971.1 16765356 1253547 complement(2105211..2106002) 1 NC_003197.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 2106002 cbiJ 1253547 cbiJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalt-precorrin-6x reductase NP_460971.1 2105211 R 99287 CDS NP_460972.1 16765357 1253548 complement(2105999..2106724) 1 NC_003197.1 catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; precorrin-3B C(17)-methyltransferase 2106724 cbiH 1253548 cbiH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 precorrin-3B C(17)-methyltransferase NP_460972.1 2105999 R 99287 CDS NP_460973.1 16765358 1253549 complement(2106724..2107779) 1 NC_003197.1 catalyzes the formation of cobalt-precorrin 5B from cobalt-precorrin 5A; protein characterization on unidentifed S. typhimurium strain PMID:16866557; cobalt-precorrin 5A hydrolase 2107779 cbiG 1253549 cbiG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalt-precorrin 5A hydrolase NP_460973.1 2106724 R 99287 CDS NP_460974.1 16765359 1253550 complement(2107760..2108533) 1 NC_003197.1 precorrin-4 C11-methyltransferase 2108533 cbiF 1253550 cbiF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 precorrin-4 C11-methyltransferase NP_460974.1 2107760 R 99287 CDS NP_460975.1 16765360 1253551 complement(2108517..2109095) 1 NC_003197.1 catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase 2109095 cbiT 1253551 cbiT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalt-precorrin-6Y C(15)-methyltransferase NP_460975.1 2108517 R 99287 CDS NP_460976.1 16765361 1253552 complement(2109085..2109690) 1 NC_003197.1 catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase 2109690 cbiE 1253552 cbiE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalt-precorrin-6Y C(5)-methyltransferase NP_460976.1 2109085 R 99287 CDS NP_460977.1 16765362 1253553 complement(2109684..2110823) 1 NC_003197.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 2110823 cbiD 1253553 cbiD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalt-precorrin-6A synthase NP_460977.1 2109684 R 99287 CDS NP_460978.1 16765363 1253554 complement(2110823..2111455) 1 NC_003197.1 catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase 2111455 cbiC 1253554 cbiC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalt-precorrin-8X methylmutase NP_460978.1 2110823 R 99287 CDS NP_460979.1 16765364 1253555 complement(2111466..2112425) 1 NC_003197.1 CobD; CbiB in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; adenosylcobinamide-phosphate synthase 2112425 cbiB 1253555 cbiB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 adenosylcobinamide-phosphate synthase NP_460979.1 2111466 R 99287 CDS NP_460980.1 16765365 1253556 complement(2112422..2113801) 1 NC_003197.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 2113801 cbiA 1253556 cbiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobyrinic acid a,c-diamide synthase NP_460980.1 2112422 R 99287 CDS NP_460981.1 16765366 1253557 complement(2114399..2115310) 1 NC_003197.1 regulatory protein PocR (SW:POCR_SALTY); propanediol utilization protein; AraC family; transcriptional regulator PocR 2115310 pocR 1253557 pocR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator PocR NP_460981.1 2114399 R 99287 CDS NP_460982.1 16765367 1253558 complement(2115527..2116321) 1 NC_003197.1 propanediol diffusion facilitator (SW:PDUF_SALTY); propanediol utilization protein; propanediol diffusion facilitator 2116321 pduF 1253558 pduF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol diffusion facilitator NP_460982.1 2115527 R 99287 CDS NP_460983.1 16765368 1253559 2116846..2117130 1 NC_003197.1 propanediol utilization protein PduA (SW:PDUA_SALTY); propanediol utilization protein; propanediol utilization polyhedral body protein PduA 2117130 pduA 1253559 pduA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol utilization polyhedral body protein PduA NP_460983.1 2116846 D 99287 CDS NP_460984.2 409994423 1253560 2117127..2117939 1 NC_003197.1 propanediol utilization protein PduB (SW:PDUB_SALTY); propanediol utilization protein; propanediol utilization polyhedral body protein PduB 2117939 pduB 1253560 pduB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol utilization polyhedral body protein PduB NP_460984.2 2117127 D 99287 CDS NP_460985.1 16765370 1253561 2117958..2119622 1 NC_003197.1 glycerol dehydratase large subunit (SW:DHAB_SALTY); propanediol utilization protein; propanediol dehydratase large subunit 2119622 pduC 1253561 pduC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol dehydratase large subunit NP_460985.1 2117958 D 99287 CDS NP_460986.1 16765371 1253562 2119633..2120307 1 NC_003197.1 propanediol utilization protein; propanediol dehydratase medium subunit 2120307 pduD 1253562 pduD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol dehydratase medium subunit NP_460986.1 2119633 D 99287 CDS NP_460987.1 16765372 1253563 2120322..2120843 1 NC_003197.1 propanediol utilization protein; propanediol dehydratase small subunit 2120843 pduE 1253563 pduE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol dehydratase small subunit NP_460987.1 2120322 D 99287 CDS NP_460988.1 16765373 1253564 2120853..2122685 1 NC_003197.1 propanediol utilization protein; propanediol dehydratase reactivation protein 2122685 pduG 1253564 pduG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol dehydratase reactivation protein NP_460988.1 2120853 D 99287 CDS NP_460989.1 16765374 1253565 2122675..2123025 1 NC_003197.1 propanediol utilization protein; propanediol dehydratase reactivation protein 2123025 pduH 1253565 pduH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol dehydratase reactivation protein NP_460989.1 2122675 D 99287 CDS NP_460990.1 16765375 1253566 2123044..2123319 1 NC_003197.1 propanediol utilization polyhedral body protein PduJ 2123319 pduJ 1253566 pduJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol utilization polyhedral body protein PduJ NP_460990.1 2123044 D 99287 CDS NP_460991.2 308065960 1253567 2123344..2123805 1 NC_003197.1 propanediol utilization polyhedral body protein PduK 2123805 pduK 1253567 pduK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol utilization polyhedral body protein PduK NP_460991.2 2123344 D 99287 CDS NP_460992.1 16765377 1253568 2123805..2124437 1 NC_003197.1 phosphate propanoyltransferase 2124437 pduL 1253568 pduL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphate propanoyltransferase NP_460992.1 2123805 D 99287 CDS NP_460993.1 16765378 1253569 2124434..2124925 1 NC_003197.1 propanediol utilization protein PduM 2124925 pduM 1253569 pduM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol utilization protein PduM NP_460993.1 2124434 D 99287 CDS NP_460994.1 16765379 1253570 2124929..2125204 1 NC_003197.1 propanediol utilization polyhedral body protein PduN 2125204 pduN 1253570 pduN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol utilization polyhedral body protein PduN NP_460994.1 2124929 D 99287 CDS NP_460995.1 16765380 1253571 2125214..2126224 1 NC_003197.1 related to B12-dependent glycerol dehydratase; propanediol utilization protein PduO 2126224 pduO 1253571 pduO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol utilization protein PduO NP_460995.1 2125214 D 99287 CDS NP_460996.1 16765381 1253572 2126221..2127615 1 NC_003197.1 CoA-dependent propionaldehyde dehydrogenase 2127615 pduP 1253572 pduP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 CoA-dependent propionaldehyde dehydrogenase NP_460996.1 2126221 D 99287 CDS NP_460997.1 16765382 1253573 2127627..2128739 1 NC_003197.1 propanol dehydrogenase 2128739 pduQ 1253573 pduQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanol dehydrogenase NP_460997.1 2127627 D 99287 CDS NP_460998.1 16765383 1253574 2128736..2130091 1 NC_003197.1 propanediol utilization polyhedral body protein PduS 2130091 pduS 1253574 pduS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol utilization polyhedral body protein PduS NP_460998.1 2128736 D 99287 CDS NP_460999.1 16765384 1253575 2130094..2130648 1 NC_003197.1 propanediol utilization polyhedral body protein PduT 2130648 pduT 1253575 pduT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol utilization polyhedral body protein PduT NP_460999.1 2130094 D 99287 CDS NP_461000.1 16765385 1253576 2130648..2130998 1 NC_003197.1 propanediol utilization protein PduU (SW:PDUU_SALTY); propanediol utilization protein; propanediol utilization polyhedral body protein PduU 2130998 pduU 1253576 pduU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol utilization polyhedral body protein PduU NP_461000.1 2130648 D 99287 CDS NP_461001.1 16765386 1253577 2131003..2131455 1 NC_003197.1 propanediol utilization protein PduV (SW:PDUV_SALTY); propanediol utilization protein PduV 2131455 pduV 1253577 pduV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propanediol utilization protein PduV NP_461001.1 2131003 D 99287 CDS NP_461002.1 16765387 1253578 2131440..2132654 1 NC_003197.1 involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol; propionate kinase 2132654 pduW 1253578 pduW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propionate kinase NP_461002.1 2131440 D 99287 CDS NP_461003.1 16765388 1253579 2132712..2133614 1 NC_003197.1 Propanediol utilization protein PduX; L-threonine kinase 2133614 pduX 1253579 pduX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-threonine kinase NP_461003.1 2132712 D 99287 CDS NP_461004.1 16765389 1253580 complement(2133648..2133983) 1 NC_003197.1 hypothetical protein 2133983 1253580 STM2059 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461004.1 2133648 R 99287 CDS NP_461005.1 16765390 1253581 complement(2134228..2135286) 1 NC_003197.1 inner membrane protein 2135286 yeeA 1253581 yeeA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461005.1 2134228 R 99287 CDS NP_461006.1 16765391 1253582 complement(2135405..2135872) 1 NC_003197.1 DNA gyrase inhibitor 2135872 sbmC 1253582 sbmC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA gyrase inhibitor NP_461006.1 2135405 R 99287 CDS NP_461007.1 16765392 1253583 complement(2136025..2137197) 1 NC_003197.1 removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase DacD 2137197 dacD 1253583 dacD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-alanyl-D-alanine carboxypeptidase DacD NP_461007.1 2136025 R 99287 CDS NP_461008.1 16765393 1253584 complement(2137321..2138085) 1 NC_003197.1 membrane-anchoring protein (SW:PHSC_SALTY); hydrogen sulfide production; thiosulfate reductase cytochrome B subunit 2138085 phsC 1253584 phsC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiosulfate reductase cytochrome B subunit NP_461008.1 2137321 R 99287 CDS NP_461009.1 16765394 1253585 complement(2138082..2138660) 1 NC_003197.1 PhsB (SW:PHSB_SALTY); hydrogen sulfide production; iron-sulfur subunit; electron transfer; thiosulfate reductase electron transport protein PhsB 2138660 phsB 1253585 phsB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiosulfate reductase electron transport protein PhsB NP_461009.1 2138082 R 99287 CDS NP_461010.1 16765395 1253586 complement(2138675..2140951) 1 NC_003197.1 membrane-anchoring protein (SW:PHSA_SALTY); hydrogen sulfide production; thiosulfate reductase 2140951 phsA 1253586 phsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiosulfate reductase NP_461010.1 2138675 R 99287 CDS NP_461011.1 16765396 1253587 2141570..2143918 1 NC_003197.1 E3 ubiquitin-protein ligase SopA 2143918 sopA 1253587 sopA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 E3 ubiquitin-protein ligase SopA NP_461011.1 2141570 D 99287 CDS NP_461012.1 16765397 1253588 2144261..2145691 1 NC_003197.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2145691 sbcB 1253588 sbcB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 exonuclease I NP_461012.1 2144261 D 99287 CDS NP_461013.1 16765398 1253589 complement(2145827..2147191) 1 NC_003197.1 amino acid transport protein 2147191 yeeF 1253589 yeeF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amino acid transport protein NP_461013.1 2145827 R 99287 CDS NP_461014.1 16765399 1253590 complement(2147471..2148385) 1 NC_003197.1 LysR family transcriptional regulator 2148385 yeeY 1253590 yeeY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_461014.1 2147471 R 99287 CDS NP_461015.1 16765400 1253591 complement(2148431..2149255) 1 NC_003197.1 dehydratase 2149255 yeeZ 1253591 yeeZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dehydratase NP_461015.1 2148431 R 99287 CDS NP_461016.1 16765401 1253592 2149615..2150514 1 NC_003197.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2150514 hisG 1253592 hisG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP phosphoribosyltransferase NP_461016.1 2149615 D 99287 CDS NP_461017.1 16765402 1253593 2150617..2151921 1 NC_003197.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2151921 hisD 1253593 hisD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 histidinol dehydrogenase NP_461017.1 2150617 D 99287 CDS NP_461018.1 16765403 1253594 2151918..2152997 1 NC_003197.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2152997 hisC 1253594 hisC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 histidinol-phosphate aminotransferase NP_461018.1 2151918 D 99287 CDS NP_461019.1 16765404 1253595 2152994..2154061 1 NC_003197.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2154061 hisB 1253595 hisB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase NP_461019.1 2152994 D 99287 CDS NP_461020.2 308065959 1253596 2154061..2154651 1 NC_003197.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2154651 hisH 1253596 hisH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 imidazole glycerol phosphate synthase subunit HisH NP_461020.2 2154061 D 99287 CDS NP_461021.1 16765406 1253597 2154651..2155388 1 NC_003197.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2155388 hisA 1253597 hisA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase NP_461021.1 2154651 D 99287 CDS NP_461022.1 16765407 1253598 2155370..2156146 1 NC_003197.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2156146 hisF 1253598 hisF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 imidazole glycerol phosphate synthase subunit HisF NP_461022.1 2155370 D 99287 CDS NP_461023.1 16765408 1253599 2156140..2156751 1 NC_003197.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2156751 hisI 1253599 hisI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase NP_461023.1 2156140 D 99287 CDS NP_461024.1 16765409 1253600 complement(2156832..2157815) 1 NC_003197.1 chain length determinant protein; polysaccharide antigen chainregulator (SW:WZZB_SALTY); regulator of length of O-antigen component of lipopolysaccharide chains; chain length determinant protein 2157815 wzzB 1253600 wzzB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chain length determinant protein NP_461024.1 2156832 R 99287 CDS NP_461025.1 16765410 1253601 complement(2157958..2159124) 1 NC_003197.1 UDP-glucose 6-dehydrogenase (SW:UDG_SALTY); UDP-glucose 6-dehydrogenase 2159124 udg 1253601 udg Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-glucose 6-dehydrogenase NP_461025.1 2157958 R 99287 CDS NP_461026.1 16765411 1253602 complement(2159361..2160767) 1 NC_003197.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2160767 gnd 1253602 gnd Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 6-phosphogluconate dehydrogenase NP_461026.1 2159361 R 99287 CDS NP_461027.1 16765412 1253603 complement(2160931..2162361) 1 NC_003197.1 undecaprenyl-phosphate galactosephosphotransferase (SW:RFBP_SALTY); mutation results in LPS side chain defect; undecaprenyl-phosphate galactose phosphotransferase 2162361 rfbP 1253603 rfbP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 undecaprenyl-phosphate galactose phosphotransferase NP_461027.1 2160931 R 99287 CDS NP_461028.1 16765413 1253604 complement(2162433..2163866) 1 NC_003197.1 phosphomannomutase (SW:RFBK_SALTY); LPS side chain defect; phosphomannomutase 2163866 rfbK 1253604 rfbK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphomannomutase NP_461028.1 2162433 R 99287 CDS NP_461029.1 16765414 1253605 complement(2163853..2165292) 1 NC_003197.1 mannose-1-phosphate guanylyltransferase GDP (SW:RFBM_SALTY); LPS side chain defect; mannose-1-phosphate guanylyltransferase 2165292 rfbM 1253605 rfbM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mannose-1-phosphate guanylyltransferase NP_461029.1 2163853 R 99287 CDS NP_461030.1 16765415 1253606 complement(2165293..2166237) 1 NC_003197.1 rhamnosyltransferase RfbN (SW:RFBN_SALTY); LPS side chain defect; O antigen biosynthesis rhamnosyltransferase RfbN 2166237 rfbN 1253606 rfbN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 O antigen biosynthesis rhamnosyltransferase RfbN NP_461030.1 2165293 R 99287 CDS NP_461031.1 16765416 1253607 complement(2166238..2167299) 1 NC_003197.1 RFBU protein (SW:RFBU_SALTY); LPS side chain defect; O-antigen biosynthesis protein RfbU 2167299 rfbU 1253607 rfbU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 O-antigen biosynthesis protein RfbU NP_461031.1 2166238 R 99287 CDS NP_461032.1 16765417 1253608 complement(2167619..2168620) 1 NC_003197.1 RFBV protein (SW:RFBV_SALTY); LPS side chain defect; abequosyltransferase RfbV 2168620 rfbV 1253608 rfbV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 abequosyltransferase RfbV NP_461032.1 2167619 R 99287 CDS NP_461033.1 16765418 1253609 complement(2168625..2169917) 1 NC_003197.1 O-antigen transporter (SW:RFBX_SALTY); LPS side chain defect; O-antigen transferase 2169917 rfbX 1253609 rfbX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 O-antigen transferase NP_461033.1 2168625 R 99287 CDS NP_461034.1 16765419 1253610 complement(2169999..2170898) 1 NC_003197.1 CDP-abequose synthase (SW:RFBJ_SALTY); LPS side chain defect; CDP-abequose synthase 2170898 rfbJ 1253610 rfbJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 CDP-abequose synthase NP_461034.1 2169999 R 99287 CDS NP_461035.1 16765420 1253611 complement(2170926..2172239) 1 NC_003197.1 lipopolysaccharide biosynthesis protein RfbH (SW:RFBH_SALTY); LPS side chain defect; lipopolysaccharide biosynthesis protein RfbH 2172239 rfbH 1253611 rfbH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipopolysaccharide biosynthesis protein RfbH NP_461035.1 2170926 R 99287 CDS NP_461036.1 16765421 1253612 complement(2172266..2173345) 1 NC_003197.1 CDP-glucose 4,6-dehydratase (SW:RFBG_SALTY); LPS side chain defect; CDP glucose 4,6-dehydratase 2173345 rfbG 1253612 rfbG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 CDP glucose 4,6-dehydratase NP_461036.1 2172266 R 99287 CDS NP_461037.1 16765422 1253613 complement(2173350..2174123) 1 NC_003197.1 glucose-1-phosphate cytidylyltransferase (SW:RFBF_SALTY); LPS side chain defect; glucose-1-phosphate cytidylyltransferase 2174123 rfbF 1253613 rfbF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucose-1-phosphate cytidylyltransferase NP_461037.1 2173350 R 99287 CDS NP_461038.1 16765423 1253614 complement(2174120..2175112) 1 NC_003197.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 2175112 rfbI 1253614 rfbI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 CDP-6-deoxy-delta-3,4-glucoseen reductase NP_461038.1 2174120 R 99287 CDS NP_461039.1 16765424 1253615 complement(2175118..2175669) 1 NC_003197.1 DTDP-4-dehydrorhamnose 3,5-epimerase (SW:RFBC_SALTY); dTDP-4-deoxyrhamnose 3,5 epimerase 2175669 rfbC 1253615 rfbC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dTDP-4-deoxyrhamnose 3,5 epimerase NP_461039.1 2175118 R 99287 CDS NP_461040.1 16765425 1253616 complement(2175670..2176548) 1 NC_003197.1 glucose-1-phosphate thymidylyltransferase 2176548 rfbA 1253616 rfbA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucose-1-phosphate thymidylyltransferase NP_461040.1 2175670 R 99287 CDS NP_461041.1 16765426 1253617 complement(2176596..2177495) 1 NC_003197.1 with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose; dTDP-4-dehydrorhamnose reductase 2177495 rfbD 1253617 rfbD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dTDP-4-dehydrorhamnose reductase NP_461041.1 2176596 R 99287 CDS NP_461042.1 16765427 1253618 complement(2177495..2178580) 1 NC_003197.1 NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase 2178580 rfbB 1253618 rfbB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dTDP-glucose-4,6-dehydratase NP_461042.1 2177495 R 99287 CDS NP_461043.1 16765428 1253619 complement(2178957..2179850) 1 NC_003197.1 together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalF 2179850 galF 1253619 galF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UTP--glucose-1-phosphate uridylyltransferase subunit GalF NP_461043.1 2178957 R 99287 CDS NP_461044.1 16765429 1253620 complement(2180028..2181431) 1 NC_003197.1 WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; colanic acid biosynthesis protein WcaM 2181431 wcaM 1253620 wcaM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 colanic acid biosynthesis protein WcaM NP_461044.1 2180028 R 99287 CDS NP_461045.1 16765430 1253621 complement(2181442..2182662) 1 NC_003197.1 in colanic acid biosynthesis gene cluster; colanic acid biosynthesis glycosyltransferase WcaL 2182662 wcaL 1253621 wcaL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 colanic acid biosynthesis glycosyltransferase WcaL NP_461045.1 2181442 R 99287 CDS NP_461046.1 16765431 1253622 complement(2182659..2183939) 1 NC_003197.1 pyruvyl transferase 2183939 wcaK 1253622 wcaK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvyl transferase NP_461046.1 2182659 R 99287 CDS NP_461047.1 16765432 1253623 complement(2183961..2185439) 1 NC_003197.1 colanic acid exporter 2185439 wzxC 1253623 wzxC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 colanic acid exporter NP_461047.1 2183961 R 99287 CDS NP_461048.1 16765433 1253624 complement(2185572..2186966) 1 NC_003197.1 WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; UDP-glucose lipid carrier transferase 2186966 wcaJ 1253624 wcaJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-glucose lipid carrier transferase NP_461048.1 2185572 R 99287 CDS NP_461049.1 16765434 1253625 complement(2187020..2188390) 1 NC_003197.1 phosphomannomutase in colanic acid gene cluster (SW:MANB_SALTY); phosphomannomutase 2188390 cpsG 1253625 cpsG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphomannomutase NP_461049.1 2187020 R 99287 CDS NP_461050.2 39546334 1253626 complement(2188501..2189937) 1 NC_003197.1 mannose-1-phosphate guanylyltransferase; GDP (SW:MANC_SALTY); in colanic acid gene cluster; mannose-1-phosphate guanylyltransferase 2189937 manC 1253626 manC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mannose-1-phosphate guanylyltransferase NP_461050.2 2188501 R 99287 CDS NP_461051.1 16765436 1253627 complement(2189940..2191163) 1 NC_003197.1 glycosyl transferase 2191163 wcaI 1253627 wcaI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyl transferase NP_461051.1 2189940 R 99287 CDS NP_461052.1 16765437 1253628 complement(2191160..2191663) 1 NC_003197.1 GDP-mannose mannosyl hydrolase 2191663 wcaH 1253628 wcaH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GDP-mannose mannosyl hydrolase NP_461052.1 2191160 R 99287 CDS NP_461053.1 16765438 1253629 complement(2191635..2192600) 1 NC_003197.1 GDP-fucose synthetase 2192600 wcaG 1253629 wcaG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GDP-fucose synthetase NP_461053.1 2191635 R 99287 CDS NP_461054.1 16765439 1253630 complement(2192603..2193724) 1 NC_003197.1 GDP-D-mannose dehydratase 2193724 gmd 1253630 gmd Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GDP-D-mannose dehydratase NP_461054.1 2192603 R 99287 CDS NP_461055.1 16765440 1253631 complement(2193748..2194302) 1 NC_003197.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); colanic acid biosynthesis acetyltransferase WcaF 2194302 wcaF 1253631 wcaF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 colanic acid biosynthesis acetyltransferase WcaF NP_461055.1 2193748 R 99287 CDS NP_461056.1 16765441 1253632 complement(2194318..2195064) 1 NC_003197.1 glycosyl transferase family protein 2195064 wcaE 1253632 wcaE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyl transferase family protein NP_461056.1 2194318 R 99287 CDS NP_461057.1 16765442 1253633 complement(2195077..2196291) 1 NC_003197.1 essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; colanic acid polymerase 2196291 wcaD 1253633 wcaD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 colanic acid polymerase NP_461057.1 2195077 R 99287 CDS NP_461058.1 16765443 1253634 complement(2196266..2197483) 1 NC_003197.1 glycosyl transferase 2197483 wcaC 1253634 wcaC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyl transferase NP_461058.1 2196266 R 99287 CDS NP_461059.1 16765444 1253635 complement(2197480..2197968) 1 NC_003197.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium; colanic acid biosynthesis acetyltransferase WcaB 2197968 wcaB 1253635 wcaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 colanic acid biosynthesis acetyltransferase WcaB NP_461059.1 2197480 R 99287 CDS NP_461060.1 16765445 1253636 complement(2197971..2198813) 1 NC_003197.1 glycosyl transferase 2198813 wcaA 1253636 wcaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyl transferase NP_461060.1 2197971 R 99287 CDS NP_461061.1 16765446 1253637 complement(2198900..2201059) 1 NC_003197.1 Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine-protein kinase 2201059 wzc 1253637 wzc Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tyrosine-protein kinase NP_461061.1 2198900 R 99287 CDS NP_461062.1 16765447 1253638 complement(2201056..2201505) 1 NC_003197.1 Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; protein-tyrosine-phosphatase 2201505 wzb 1253638 wzb Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protein-tyrosine-phosphatase NP_461062.1 2201056 R 99287 CDS NP_461063.1 16765448 1253639 complement(2201511..2202650) 1 NC_003197.1 polysaccharide export protein 2202650 wza 1253639 wza Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 polysaccharide export protein NP_461063.1 2201511 R 99287 CDS NP_461064.1 16765449 1253640 2203325..2204905 1 NC_003197.1 inner membrane protein 2204905 yegH 1253640 yegH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461064.1 2203325 D 99287 CDS NP_461065.1 16765450 1253641 complement(2204991..2206847) 1 NC_003197.1 YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; assembly protein 2206847 asmA 1253641 asmA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 assembly protein NP_461065.1 2204991 R 99287 CDS NP_461066.1 16765451 1253642 complement(2206886..2207467) 1 NC_003197.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2207467 dcd 1253642 dcd Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 deoxycytidine triphosphate deaminase NP_461066.1 2206886 R 99287 CDS NP_461067.1 16765452 1253643 complement(2207558..2208199) 1 NC_003197.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2208199 udk 1253643 udk Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 uridine kinase NP_461067.1 2207558 R 99287 CDS NP_461068.1 16765453 1253644 2208530..2211520 1 NC_003197.1 diguanylate cyclase/phosphodiesterase 2211520 yegE 1253644 yegE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diguanylate cyclase/phosphodiesterase NP_461068.1 2208530 D 99287 CDS NP_461069.1 16765454 1253645 complement(2211488..2212357) 1 NC_003197.1 inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine; 3-methyl-adenine DNA glycosylase II 2212357 alkA 1253645 alkA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-methyl-adenine DNA glycosylase II NP_461069.1 2211488 R 99287 CDS NP_461070.1 16765455 1253646 2212491..2213843 1 NC_003197.1 chaperone 2213843 yegD 1253646 yegD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone NP_461070.1 2212491 D 99287 CDS NP_461071.1 16765456 1253647 2214284..2215525 1 NC_003197.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug resistance protein MdtA 2215525 1253647 STM2126 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug resistance protein MdtA NP_461071.1 2214284 D 99287 CDS NP_461072.1 16765457 1253648 2215525..2218647 1 NC_003197.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug resistance protein MdtB 2218647 yegN 1253648 yegN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug resistance protein MdtB NP_461072.1 2215525 D 99287 CDS NP_461073.1 16765458 1253649 2218648..2221728 1 NC_003197.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; multidrug resistance protein MdtC 2221728 yegO 1253649 yegO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug resistance protein MdtC NP_461073.1 2218648 D 99287 CDS NP_461074.1 16765459 1253650 2221725..2223137 1 NC_003197.1 multidrug resistance protein MdtE 2223137 yegB 1253650 yegB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug resistance protein MdtE NP_461074.1 2221725 D 99287 CDS NP_461075.1 16765460 1253651 2223137..2224540 1 NC_003197.1 sensory kinase BaeS 2224540 baeS 1253651 baeS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensory kinase BaeS NP_461075.1 2223137 D 99287 CDS NP_461076.1 16765461 1253652 2224537..2225259 1 NC_003197.1 response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; response regulator BaeR 2225259 baeR 1253652 baeR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 response regulator BaeR NP_461076.1 2224537 D 99287 CDS NP_461077.1 16765462 1253654 2225846..2226730 1 NC_003197.1 cytoplasmic protein 2226730 1253654 STM2133 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461077.1 2225846 D 99287 CDS NP_461078.1 16765463 1253655 2226730..2227446 1 NC_003197.1 inner membrane protein 2227446 1253655 STM2134 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461078.1 2226730 D 99287 CDS NP_461079.1 16765464 1253656 2227457..2229568 1 NC_003197.1 inner membrane protein 2229568 1253656 STM2135 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461079.1 2227457 D 99287 CDS NP_461080.1 16765465 1253657 2229684..2231045 1 NC_003197.1 protease 2231045 yegQ 1253657 yegQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protease NP_461080.1 2229684 D 99287 CDS NP_461081.1 16765466 1253658 2231496..2232542 1 NC_003197.1 cytoplasmic protein 2232542 1253658 STM2137 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461081.1 2231496 D 99287 CDS NP_461082.1 16765467 1253659 complement(2232578..2232994) 1 NC_003197.1 cytoplasmic protein 2232994 1253659 STM2138 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461082.1 2232578 R 99287 CDS NP_461083.1 16765468 1253660 complement(2233116..2233451) 1 NC_003197.1 inner membrane protein 2233451 1253660 STM2139 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461083.1 2233116 R 99287 CDS NP_945164.1 39546335 2673733 complement(2233813..2233929) 1 NC_003197.1 hypothetical protein 2233929 2673733 STM2139.2n Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945164.1 2233813 R 99287 CDS NP_461084.1 16765469 1253661 2234013..2234912 1 NC_003197.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2234912 yegS 1253661 yegS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipid kinase NP_461084.1 2234013 D 99287 CDS NP_461085.1 16765470 1253662 complement(2234965..2236017) 1 NC_003197.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 2236017 fbaB 1253662 fbaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fructose-bisphosphate aldolase NP_461085.1 2234965 R 99287 CDS NP_461086.1 16765471 1253663 2236271..2237542 1 NC_003197.1 MFS family transport protein 2237542 yegT 1253663 yegT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family transport protein NP_461086.1 2236271 D 99287 CDS NP_461087.1 16765472 1253664 2237539..2238543 1 NC_003197.1 glycohydrolase 2238543 yegU 1253664 yegU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycohydrolase NP_461087.1 2237539 D 99287 CDS NP_461088.1 16765473 1253665 2238540..2239505 1 NC_003197.1 sugar kinase 2239505 yegV 1253665 yegV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar kinase NP_461088.1 2238540 D 99287 CDS NP_461089.1 16765474 1253666 complement(2239479..2240225) 1 NC_003197.1 GntR family regulatory protein 2240225 yegW 1253666 yegW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GntR family regulatory protein NP_461089.1 2239479 R 99287 CDS NP_461090.1 16765475 1253667 complement(2240261..2241061) 1 NC_003197.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 2241061 thiD 1253667 thiD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase NP_461090.1 2240261 R 99287 CDS NP_461091.1 16765476 1253668 complement(2241048..2241845) 1 NC_003197.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 2241845 thiM 1253668 thiM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydroxyethylthiazole kinase NP_461091.1 2241048 R 99287 CDS NP_461092.1 16765477 1253669 2242255..2242569 1 NC_003197.1 periplasmic protein 2242569 1253669 STM2148 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_461092.1 2242255 D 99287 CDS NP_461093.1 16765478 1253670 complement(2242832..2243839) 1 NC_003197.1 outer membrane lipoprotein 2243839 stcD 1253670 stcD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_461093.1 2242832 R 99287 CDS NP_461094.1 16765479 1253671 complement(2243855..2246344) 1 NC_003197.1 outer membrane protein 2246344 stcC 1253671 stcC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_461094.1 2243855 R 99287 CDS NP_461095.1 16765480 1253672 complement(2246358..2247041) 1 NC_003197.1 periplasmic chaperone protein 2247041 stcB 1253672 stcB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic chaperone protein NP_461095.1 2246358 R 99287 CDS NP_461096.1 16765481 1253673 complement(2247097..2247627) 1 NC_003197.1 fimbrial-like protein 2247627 stcA 1253673 stcA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial-like protein NP_461096.1 2247097 R 99287 CDS NP_461097.1 16765482 1253674 complement(2247906..2248187) 1 NC_003197.1 outer membrane protein 2248187 yehE 1253674 yehE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_461097.1 2247906 R 99287 CDS NP_461098.1 16765483 1253675 complement(2248465..2249574) 1 NC_003197.1 ATP-binding protein 2249574 mrp 1253675 mrp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-binding protein NP_461098.1 2248465 R 99287 CDS NP_461099.1 16765484 1253676 2249739..2251772 1 NC_003197.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionine--tRNA ligase 2251772 metG 1253676 metG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methionine--tRNA ligase NP_461099.1 2249739 D 99287 CDS NP_461100.1 16765485 1253677 2252013..2252471 1 NC_003197.1 lipoprotein 2252471 yehR 1253677 yehR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein NP_461100.1 2252013 D 99287 CDS NP_461101.1 16765486 1253678 2252643..2253173 1 NC_003197.1 hypothetical 16.9 kDa lipoprotein precursor; hypothetical protein 2253173 1253678 STM2156A Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461101.1 2252643 D 99287 CDS NP_461102.1 16765487 1253679 complement(2253230..2253697) 1 NC_003197.1 cytoplasmic protein 2253697 yehS 1253679 yehS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461102.1 2253230 R 99287 CDS NP_461103.1 16765488 1253680 complement(2253744..2254463) 1 NC_003197.1 unknown function; when overproduced it confers drug-resistance; two-component response-regulator YehT 2254463 yehT 1253680 yehT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 two-component response-regulator YehT NP_461103.1 2253744 R 99287 CDS NP_461104.1 16765489 1253681 complement(2254460..2256145) 1 NC_003197.1 two component sensor kinase YehU 2256145 yehU 1253681 yehU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 two component sensor kinase YehU NP_461104.1 2254460 R 99287 CDS NP_461105.1 16765490 1253682 2256368..2257099 1 NC_003197.1 HTH-type transcriptional regulator MlrA 2257099 yehV 1253682 yehV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator MlrA NP_461105.1 2256368 D 99287 CDS NP_461106.1 16765491 1253683 2257159..2257266 1 NC_003197.1 hypothetical protein 2257266 1253683 STM2161 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461106.1 2257159 D 99287 CDS NP_461107.1 16765492 1253684 complement(2257247..2257978) 1 NC_003197.1 proline/glycine betaine ABC transporter permease 2257978 yehW 1253684 yehW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 proline/glycine betaine ABC transporter permease NP_461107.1 2257247 R 99287 CDS NP_461108.1 16765493 1253685 complement(2257962..2258909) 1 NC_003197.1 proline/glycine betaine ABC transporter ATP-binding protein 2258909 yehX 1253685 yehX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 proline/glycine betaine ABC transporter ATP-binding protein NP_461108.1 2257962 R 99287 CDS NP_461109.1 16765494 1253686 complement(2258902..2260071) 1 NC_003197.1 proline/glycine betaine ABC transporter permease 2260071 yehY 1253686 yehY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 proline/glycine betaine ABC transporter permease NP_461109.1 2258902 R 99287 CDS NP_461110.1 16765495 1253687 complement(2260075..2260992) 1 NC_003197.1 proline/glycine betaine ABC transporter substrate-binding protein 2260992 yehZ 1253687 yehZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 proline/glycine betaine ABC transporter substrate-binding protein NP_461110.1 2260075 R 99287 CDS NP_461111.1 16765496 1253688 complement(2261173..2263470) 1 NC_003197.1 periplasmic beta-glucosidase (SW:BGLX_SALTY); periplasmic beta-glucosidase 2263470 bglX 1253688 bglX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic beta-glucosidase NP_461111.1 2261173 R 99287 CDS NP_461112.1 16765497 1253689 2263737..2265467 1 NC_003197.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 2265467 dld 1253689 dld Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-lactate dehydrogenase NP_461112.1 2263737 D 99287 CDS NP_461113.1 16765498 1253690 complement(2265525..2266472) 1 NC_003197.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 2266472 pbpG 1253690 pbpG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-alanyl-D-alanine endopeptidase NP_461113.1 2265525 R 99287 CDS NP_461114.1 16765499 1253691 complement(2266638..2267225) 1 NC_003197.1 transporter 2267225 yohC 1253691 yohC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transporter NP_461114.1 2266638 R 99287 CDS NP_461115.1 16765500 1253692 2267357..2267953 1 NC_003197.1 DedA family; DedA family membrane protein 2267953 yohD 1253692 yohD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DedA family membrane protein NP_461115.1 2267357 D 99287 CDS NP_461116.1 16765501 1253693 complement(2268002..2268763) 1 NC_003197.1 oxidoreductase 2268763 yohF 1253693 yohF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_461116.1 2268002 R 99287 CDS NP_461117.1 16765502 1253694 complement(2268829..2270265) 1 NC_003197.1 may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance outer membrane protein MdtQ 2270265 yohG 1253694 yohG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug resistance outer membrane protein MdtQ NP_461117.1 2268829 R 99287 CDS NP_461119.1 16765504 1253696 complement(2270724..2271662) 1 NC_003197.1 tRNA-dihydrouridine synthase C 2271662 yohI 1253696 yohI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA-dihydrouridine synthase C NP_461119.1 2270724 R 99287 CDS NP_461120.1 16765505 1253697 complement(2271771..2272964) 1 NC_003197.1 catalyzes the formation of catechol from salicylate; monooxygenase 2272964 1253697 STM2175 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 monooxygenase NP_461120.1 2271771 R 99287 CDS NP_461121.1 16765506 1253698 complement(2272979..2273623) 1 NC_003197.1 glutathione S-transferase 2273623 1253698 STM2176 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione S-transferase NP_461121.1 2272979 R 99287 CDS NP_461122.1 16765507 1253699 complement(2273632..2274333) 1 NC_003197.1 flutathione S-transferase 2274333 1253699 STM2177 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flutathione S-transferase NP_461122.1 2273632 R 99287 CDS NP_461123.1 16765508 1253700 complement(2274349..2275386) 1 NC_003197.1 1,2-dioxygenase 2275386 1253700 STM2178 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1,2-dioxygenase NP_461123.1 2274349 R 99287 CDS NP_461124.1 16765509 1253701 complement(2275398..2276756) 1 NC_003197.1 sugar transporter 2276756 1253701 STM2179 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar transporter NP_461124.1 2275398 R 99287 CDS NP_461125.1 16765510 1253702 2276882..2277790 1 NC_003197.1 LysR family transcriptional regulator 2277790 1253702 STM2180 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_461125.1 2276882 D 99287 CDS NP_461126.1 16765511 1253703 2277922..2278320 1 NC_003197.1 hypothetical protein 2278320 1253703 STM2181 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461126.1 2277922 D 99287 CDS NP_461127.1 16765512 1253704 2278317..2279012 1 NC_003197.1 transmembrane protein 2279012 yohK 1253704 yohK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transmembrane protein NP_461127.1 2278317 D 99287 CDS NP_461128.1 16765513 1253705 2279166..2280050 1 NC_003197.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2280050 cdd 1253705 cdd Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytidine deaminase NP_461128.1 2279166 D 99287 CDS NP_461129.1 16765514 1253706 2280227..2280946 1 NC_003197.1 vancomycin sensitivity protein 2280946 sanA 1253706 sanA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 vancomycin sensitivity protein NP_461129.1 2280227 D 99287 CDS NP_461130.1 16765515 1253707 2280943..2281188 1 NC_003197.1 inner membrane protein 2281188 b2145 1253707 b2145 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461130.1 2280943 D 99287 CDS NP_461131.1 16765516 1253708 2281393..2282634 1 NC_003197.1 NAD-dependent dihydropyrimidine dehydrogenase subunit PreT 2282634 1253708 STM2186 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NAD-dependent dihydropyrimidine dehydrogenase subunit PreT NP_461131.1 2281393 D 99287 CDS NP_461132.1 16765517 1253709 2282628..2283863 1 NC_003197.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; NAD-dependent dihydropyrimidine dehydrogenase subunit PreA 2283863 yeiA 1253709 yeiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NAD-dependent dihydropyrimidine dehydrogenase subunit PreA NP_461132.1 2282628 D 99287 CDS NP_461133.1 16765518 1253710 complement(2283938..2284948) 1 NC_003197.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; galactose/methylgalactoside ABC transporter permease MglC 2284948 mglC 1253710 mglC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 galactose/methylgalactoside ABC transporter permease MglC NP_461133.1 2283938 R 99287 CDS NP_461134.1 16765519 1253711 complement(2284964..2286484) 1 NC_003197.1 with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methylgalactoside ABC transporter ATP-binding protein MglA 2286484 mglA 1253711 mglA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 galactose/methylgalactoside ABC transporter ATP-binding protein MglA NP_461134.1 2284964 R 99287 CDS NP_461135.1 16765520 1253712 complement(2286618..2287616) 1 NC_003197.1 D-galactose-binding periplasmic protein precursor; GDP; D-galactose/D-glucose binding protein; GGBP (SW:DGAL_SALTY); ABC superfamily periplasmic protein; galactose/methylgalactoside ABC transporter substrate-binding protein MglB 2287616 mglB 1253712 mglB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 galactose/methylgalactoside ABC transporter substrate-binding protein MglB NP_461135.1 2286618 R 99287 CDS NP_461136.1 16765521 1253713 complement(2288115..2289137) 1 NC_003197.1 negative regulator of the mglBAC operon for galactose utilization; HTH-type transcriptional regulator GalS 2289137 galS 1253713 galS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator GalS NP_461136.1 2288115 R 99287 CDS NP_461137.1 16765522 1253714 complement(2289287..2290429) 1 NC_003197.1 hypothetical protein 2290429 1253714 STM2192 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461137.1 2289287 R 99287 CDS NP_461138.1 16765523 1253715 complement(2290444..2291112) 1 NC_003197.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2291112 folE 1253715 folE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GTP cyclohydrolase I NP_461138.1 2290444 R 99287 CDS NP_461139.1 16765524 1253716 2291442..2292179 1 NC_003197.1 esterase 2292179 yeiG 1253716 yeiG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 esterase NP_461139.1 2291442 D 99287 CDS NP_461140.1 16765525 1253717 complement(2292287..2292676) 1 NC_003197.1 transcriptional regulator 2292676 1253717 STM2195 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_461140.1 2292287 R 99287 CDS NP_461141.1 16765526 1253718 complement(2292681..2294048) 1 NC_003197.1 D-serine dehydratase 2294048 1253718 STM2196 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-serine dehydratase NP_461141.1 2292681 R 99287 CDS NP_461142.1 16765527 1253719 2294265..2295152 1 NC_003197.1 phosphoserine phosphatase 2295152 1253719 STM2197 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoserine phosphatase NP_461142.1 2294265 D 99287 CDS NP_461143.1 16765528 1253720 2295185..2296507 1 NC_003197.1 regulatory protein 2296507 1253720 STM2198 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_461143.1 2295185 D 99287 CDS NP_461144.1 16765529 1253721 complement(2296551..2298542) 1 NC_003197.1 Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein; catecholate siderophore receptor CirA 2298542 cirA 1253721 cirA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 catecholate siderophore receptor CirA NP_461144.1 2296551 R 99287 CDS NP_461145.1 16765530 1253722 complement(2298888..2300357) 1 NC_003197.1 APC family lysine-specific permease 2300357 lysP 1253722 lysP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 APC family lysine-specific permease NP_461145.1 2298888 R 99287 CDS NP_461146.1 16765531 1253723 complement(2300547..2301410) 1 NC_003197.1 LysR family transcriptional regulator 2301410 yeiE 1253723 yeiE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_461146.1 2300547 R 99287 CDS NP_461147.1 16765532 1253724 2301531..2302580 1 NC_003197.1 inner membrane protein 2302580 yeiH 1253724 yeiH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461147.1 2301531 D 99287 CDS NP_461148.1 16765533 1253725 2302659..2303516 1 NC_003197.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2303516 nfo 1253725 nfo Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 endonuclease IV NP_461148.1 2302659 D 99287 CDS NP_461149.1 16765534 1253726 complement(2303581..2305269) 1 NC_003197.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunit IIBC 2305269 fruA 1253726 fruA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system fructose-specific transporter subunit IIBC NP_461149.1 2303581 R 99287 CDS NP_461150.1 16765535 1253727 complement(2305286..2306224) 1 NC_003197.1 converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase 2306224 fruK 1253727 fruK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1-phosphofructokinase NP_461150.1 2305286 R 99287 CDS NP_461151.1 16765536 1253728 complement(2306224..2307354) 1 NC_003197.1 phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein 2307354 fruF 1253728 fruF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein NP_461151.1 2306224 R 99287 CDS NP_461152.1 16765537 1253729 2307723..2308904 1 NC_003197.1 sugar efflux transporter B 2308904 setB 1253729 setB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar efflux transporter B NP_461152.1 2307723 D 99287 CDS NP_461153.1 16765538 1253730 complement(2308969..2309634) 1 NC_003197.1 inner membrane protein 2309634 1253730 STM2208 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461153.1 2308969 R 99287 CDS NP_461154.1 16765539 1253731 complement(2309636..2309758) 1 NC_003197.1 inner membrane protein 2309758 1253731 STM2209 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461154.1 2309636 R 99287 CDS NP_945165.1 39546336 2673743 complement(2310146..2310400) 1 NC_003197.1 hypothetical protein 2310400 2673743 STM2209.1c Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945165.1 2310146 R 99287 CDS NP_461155.2 39546337 1253733 2310724..2311296 1 NC_003197.1 Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 2311296 yeiP 1253733 yeiP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 elongation factor P NP_461155.2 2310724 D 99287 CDS NP_461156.1 16765541 1253734 2311509..2312495 1 NC_003197.1 cobalamin biosynthesis protein 2312495 yeiR 1253734 yeiR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalamin biosynthesis protein NP_461156.1 2311509 D 99287 CDS NP_461157.1 16765542 1253735 2312525..2313244 1 NC_003197.1 permease 2313244 yeiU 1253735 yeiU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_461157.1 2312525 D 99287 CDS NP_461158.1 16765543 1253736 2313658..2314230 1 NC_003197.1 by similarity, Spr seems to have peptidase activity; involved in thermoresistance; outer membrane lipoprotein 2314230 spr 1253736 spr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_461158.1 2313658 D 99287 CDS NP_461159.1 16765544 1253737 2314556..2316112 1 NC_003197.1 involved in resistance to lambda and N4 phages; lambda/N4 phages resistance membrane protein 2316112 rtn 1253737 rtn Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lambda/N4 phages resistance membrane protein NP_461159.1 2314556 D 99287 CDS NP_461160.1 16765545 1253738 2316219..2318024 1 NC_003197.1 dipeptide/oligopeptide/nickel ABC transporter substrate-binding protein 2318024 yejA 1253738 yejA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dipeptide/oligopeptide/nickel ABC transporter substrate-binding protein NP_461160.1 2316219 D 99287 CDS NP_461161.1 16765546 1253739 2318034..2319128 1 NC_003197.1 dipeptide/oligopeptide/nickel ABC transporter permease 2319128 yejB 1253739 yejB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dipeptide/oligopeptide/nickel ABC transporter permease NP_461161.1 2318034 D 99287 CDS NP_461162.1 16765547 1253740 2319128..2320153 1 NC_003197.1 dipeptide/oligopeptide/nickel ABC transporter permease 2320153 yejE 1253740 yejE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dipeptide/oligopeptide/nickel ABC transporter permease NP_461162.1 2319128 D 99287 CDS NP_461163.1 16765548 1253741 2320155..2321744 1 NC_003197.1 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein 2321744 yejF 1253741 yejF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein NP_461163.1 2320155 D 99287 CDS NP_461164.1 16765549 1253742 complement(2321748..2322092) 1 NC_003197.1 cytoplasmic protein 2322092 yejG 1253742 yejG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461164.1 2321748 R 99287 CDS NP_461165.1 16765550 1253743 complement(2322483..2323673) 1 NC_003197.1 Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system protein 2323673 bcr 1253743 bcr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bicyclomycin/multidrug efflux system protein NP_461165.1 2322483 R 99287 CDS NP_461166.1 16765551 1253744 complement(2323701..2324396) 1 NC_003197.1 catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; rRNA small subunit pseudouridine synthase A 2324396 rsuA 1253744 rsuA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA small subunit pseudouridine synthase A NP_461166.1 2323701 R 99287 CDS NP_461167.1 16765552 1253745 2324548..2326308 1 NC_003197.1 ATP-dependent helicase 2326308 yejH 1253745 yejH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent helicase NP_461167.1 2324548 D 99287 CDS NP_461168.1 16765553 1253746 2326433..2326717 1 NC_003197.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2326717 rplY 1253746 rplY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L25 NP_461168.1 2326433 D 99287 CDS NP_461169.1 16765554 1253747 complement(2326826..2327446) 1 NC_003197.1 inner membrane protein 2327446 1253747 STM2225 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461169.1 2326826 R 99287 CDS NP_461170.1 16765555 1253748 complement(2327474..2328481) 1 NC_003197.1 present in spermidine nucleoids; nucleoid-associated protein 2328481 yejK 1253748 yejK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleoid-associated protein NP_461170.1 2327474 R 99287 CDS NP_461171.1 16765556 1253749 2328661..2328888 1 NC_003197.1 hypothetical protein 2328888 1253749 STM2227 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461171.1 2328661 D 99287 CDS NP_461172.1 16765557 1253750 2328920..2330680 1 NC_003197.1 hypothetical protein in rplY-proL intergenic region (SW:YEJM_SALTY); alkaline phosphatase superfamily; inner membrane protein 2330680 yejM 1253750 yejM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461172.1 2328920 D 99287 CDS NP_461173.2 39546338 1253752 complement(2330961..2331431) 1 NC_003197.1 DNA polymerase V subunit 2331431 1253752 STM2230.1c Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase V subunit NP_461173.2 2330961 R 99287 CDS NP_461174.1 16765559 1253753 2331492..2331782 1 NC_003197.1 SsrB-regulated factor 2331782 1253753 STM2231 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SsrB-regulated factor NP_461174.1 2331492 D 99287 CDS NP_461175.1 16765560 1253754 2332130..2333959 1 NC_003197.1 O-antigen five; acetylation of the O-antigen (LPS); O-antigen acetylase 2333959 oafA 1253754 oafA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 O-antigen acetylase NP_461175.1 2332130 D 99287 CDS NP_461176.1 16765561 1253755 complement(2334013..2334456) 1 NC_003197.1 cytoplasmic protein 2334456 1253755 STM2233 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461176.1 2334013 R 99287 CDS NP_461177.1 16765562 1253756 complement(2334834..2335361) 1 NC_003197.1 phage tail fiber assembly protein 2335361 1253756 STM2234 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail fiber assembly protein NP_461177.1 2334834 R 99287 CDS NP_461178.1 16765563 1253757 complement(2335364..2336605) 1 NC_003197.1 phage protein 2336605 1253757 STM2235 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage protein NP_461178.1 2335364 R 99287 CDS NP_461179.1 16765564 1253758 complement(2336666..2337184) 1 NC_003197.1 phage protein 2337184 1253758 STM2236 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage protein NP_461179.1 2336666 R 99287 CDS NP_461180.1 16765565 1253759 complement(2337198..2337527) 1 NC_003197.1 inner membrane protein 2337527 1253759 STM2237 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461180.1 2337198 R 99287 CDS NP_461181.1 16765566 1253760 2337824..2339155 1 NC_003197.1 phage protein 2339155 1253760 STM2238 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage protein NP_461181.1 2337824 D 99287 CDS NP_461182.1 16765567 1253761 complement(2339184..2339552) 1 NC_003197.1 phage antiterminator 2339552 1253761 STM2239 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage antiterminator NP_461182.1 2339184 R 99287 CDS NP_461183.1 16765568 1253762 complement(2339567..2340556) 1 NC_003197.1 cytoplasmic protein 2340556 1253762 STM2240 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461183.1 2339567 R 99287 CDS NP_461184.1 16765569 1253763 complement(2340885..2343251) 1 NC_003197.1 induced by the SPI-2 regulator ssrA/B; secreted by SPI-2; E3 ubiquitin-protein ligase SspH2 2343251 sspH2 1253763 sspH2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 E3 ubiquitin-protein ligase SspH2 NP_461184.1 2340885 R 99287 CDS NP_461185.1 16765570 1253764 complement(2343420..2343623) 1 NC_003197.1 phage tail fiber protein 2343623 1253764 STM2242 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail fiber protein NP_461185.1 2343420 R 99287 CDS NP_461186.1 16765571 1253765 complement(2343920..2344711) 1 NC_003197.1 phage tail fiber protein 2344711 1253765 STM2243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail fiber protein NP_461186.1 2343920 R 99287 CDS NP_461187.1 16765572 1253766 2345014..2345217 1 NC_003197.1 virulence protein MsgA-like protein 2345217 1253766 STM2244 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 virulence protein MsgA-like protein NP_461187.1 2345014 D 99287 CDS NP_461188.1 16765573 1253767 complement(2345409..2345972) 1 NC_003197.1 outer membrane protein 2345972 1253767 STM2245 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_461188.1 2345409 R 99287 CDS NP_461189.1 16765574 1253768 2346702..2347349 1 NC_003197.1 nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; response regulator NarP 2347349 narP 1253768 narP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 response regulator NarP NP_461189.1 2346702 D 99287 CDS NP_461190.1 16765575 1253769 complement(2347393..2348436) 1 NC_003197.1 heme lyase subunit 2348436 ccmH 1253769 ccmH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 heme lyase subunit NP_461190.1 2347393 R 99287 CDS NP_461191.1 16765576 1253770 complement(2348433..2348990) 1 NC_003197.1 thiol:disulfide interchange protein DsbE; cytochrome c biogenesis protein CcmG 2348990 ccmG 1253770 ccmG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome c biogenesis protein CcmG NP_461191.1 2348433 R 99287 CDS NP_461192.1 16765577 1253771 complement(2348987..2350918) 1 NC_003197.1 cytochrome c-type biogenesis protein CcmF 2350918 ccmF 1253771 ccmF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome c-type biogenesis protein CcmF NP_461192.1 2348987 R 99287 CDS NP_461193.1 16765578 1253772 complement(2350915..2351394) 1 NC_003197.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 2351394 ccmE 1253772 ccmE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome c-type biogenesis protein CcmE NP_461193.1 2350915 R 99287 CDS NP_461194.1 16765579 1253773 complement(2351391..2351603) 1 NC_003197.1 heme exporter protein CcmD 2351603 ccmD 1253773 ccmD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 heme exporter protein CcmD NP_461194.1 2351391 R 99287 CDS NP_461195.1 16765580 1253774 complement(2351600..2352337) 1 NC_003197.1 heme exporter protein CcmC 2352337 ccmC 1253774 ccmC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 heme exporter protein CcmC NP_461195.1 2351600 R 99287 CDS NP_461196.1 16765581 1253775 complement(2352389..2353048) 1 NC_003197.1 heme exporter protein CcmB 2353048 ccmB 1253775 ccmB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 heme exporter protein CcmB NP_461196.1 2352389 R 99287 CDS NP_461197.1 16765582 1253776 complement(2353045..2353662) 1 NC_003197.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis ATP-binding export protein CcmA 2353662 ccmA 1253776 ccmA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome c biogenesis ATP-binding export protein CcmA NP_461197.1 2353045 R 99287 CDS NP_461198.1 16765583 1253777 complement(2353683..2354285) 1 NC_003197.1 with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC 2354285 napC 1253777 napC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome c-type protein NapC NP_461198.1 2353683 R 99287 CDS NP_461199.1 16765584 1253778 complement(2354295..2354744) 1 NC_003197.1 small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; periplasmic nitrate reductase electron transfer subunit 2354744 napB 1253778 napB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic nitrate reductase electron transfer subunit NP_461199.1 2354295 R 99287 CDS NP_461200.1 16765585 1253779 complement(2354860..2355729) 1 NC_003197.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; ferredoxin-type protein NapH 2355729 napH 1253779 napH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferredoxin-type protein NapH NP_461200.1 2354860 R 99287 CDS NP_461201.1 16765586 1253780 complement(2355716..2356411) 1 NC_003197.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; ferredoxin-type protein NapG 2356411 napG 1253780 napG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferredoxin-type protein NapG NP_461201.1 2355716 R 99287 CDS NP_461202.1 16765587 1253781 complement(2356418..2358904) 1 NC_003197.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; periplasmic nitrate reductase large subunit 2358904 napA 1253781 napA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic nitrate reductase large subunit NP_461202.1 2356418 R 99287 CDS NP_461203.1 16765588 1253782 complement(2358901..2359164) 1 NC_003197.1 periplasmic nitrate reductase assembly protein 2359164 napD 1253782 napD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic nitrate reductase assembly protein NP_461203.1 2358901 R 99287 CDS NP_461204.1 16765589 1253783 complement(2359154..2359645) 1 NC_003197.1 Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.; ferredoxin-type protein 2359645 napF 1253783 napF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferredoxin-type protein NP_461204.1 2359154 R 99287 CDS NP_461205.1 16765590 1253784 2360059..2360553 1 NC_003197.1 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2360553 eco 1253784 eco Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ecotin NP_461205.1 2360059 D 99287 CDS NP_461206.1 16765591 1253785 complement(2360762..2362405) 1 NC_003197.1 efflux pump for the antibacterial peptide microcin J25; multidrug transporter permease/ATP-binding protein 2362405 yojI 1253785 yojI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug transporter permease/ATP-binding protein NP_461206.1 2360762 R 99287 CDS NP_461207.1 16765592 1253786 complement(2362481..2363131) 1 NC_003197.1 alkylated DNA repair protein ALKB; specific for alkylated DNA; alpha-ketoglutarate-dependent dioxygenase AlkB 2363131 alkB 1253786 alkB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alpha-ketoglutarate-dependent dioxygenase AlkB NP_461207.1 2362481 R 99287 CDS NP_461208.1 16765593 1253787 complement(2363134..2364195) 1 NC_003197.1 ADA regulatory protein; regulatory protein of adaptative response; (SW:ADA_SALTY); AraC/Xyl family; bifunctional O6-methylguanine-DNA methyltransferase/transcriptional dual regulator 2364195 ada 1253787 ada Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional O6-methylguanine-DNA methyltransferase/transcriptional dual regulator NP_461208.1 2363134 R 99287 CDS NP_461209.1 16765594 1253788 complement(2364276..2365328) 1 NC_003197.1 catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE 2365328 apbE 1253788 apbE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiamine biosynthesis lipoprotein ApbE NP_461209.1 2364276 R 99287 CDS NP_461210.1 16765595 1253789 complement(2365443..2366579) 1 NC_003197.1 allows for ions and hydrophilic solutes to cross the outer membrane; outer membrane porin protein C 2366579 ompC 1253789 ompC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane porin protein C NP_461210.1 2365443 R 99287 CDS NP_461211.1 16765596 1253791 2367308..2369977 1 NC_003197.1 in two-component regulatory system with RcsBC; sensor-like histidine kinase RcsD 2369977 rscD 1253791 rscD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensor-like histidine kinase RcsD NP_461211.1 2367308 D 99287 CDS NP_461212.1 16765597 1253792 2369994..2370644 1 NC_003197.1 two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 2370644 rcsB 1253792 rcsB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator RcsB NP_461212.1 2369994 D 99287 CDS NP_461213.1 16765598 1253793 complement(2370747..2373593) 1 NC_003197.1 in two-component regulatory system with RcsB and RscD; sensor histidine kinase RscC 2373593 rcsC 1253793 rcsC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensor histidine kinase RscC NP_461213.1 2370747 R 99287 CDS NP_461214.1 16765599 1253794 complement(2373711..2376347) 1 NC_003197.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2376347 gyrA 1253794 gyrA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA gyrase subunit A NP_461214.1 2373711 R 99287 CDS NP_461215.1 16765600 1253795 complement(2376757..2377959) 1 NC_003197.1 dehydratase 2377959 1253795 STM2273 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dehydratase NP_461215.1 2376757 R 99287 CDS NP_461216.1 16765601 1253796 complement(2377974..2379299) 1 NC_003197.1 permease 2379299 1253796 STM2274 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_461216.1 2377974 R 99287 CDS NP_461217.2 39546339 1253797 2379538..2380233 1 NC_003197.1 GntR family; GntR family regulatory protein 2380233 1253797 STM2275 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GntR family regulatory protein NP_461217.2 2379538 D 99287 CDS NP_461218.1 16765603 1253798 2380316..2381044 1 NC_003197.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2381044 ubiG 1253798 ubiG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-demethylubiquinone-9 3-methyltransferase NP_461218.1 2380316 D 99287 CDS NP_461219.1 16765604 1253799 2381400..2383685 1 NC_003197.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2383685 nrdA 1253799 nrdA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonucleotide-diphosphate reductase subunit alpha NP_461219.1 2381400 D 99287 CDS NP_461220.1 16765605 1253800 2383798..2384928 1 NC_003197.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2384928 nrdB 1253800 nrdB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonucleotide-diphosphate reductase subunit beta NP_461220.1 2383798 D 99287 CDS NP_461221.1 16765606 1253801 2384928..2385182 1 NC_003197.1 plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; 2Fe-2S ferredoxin 2385182 yfaE 1253801 yfaE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2Fe-2S ferredoxin NP_461221.1 2384928 D 99287 CDS NP_461222.1 16765607 1253802 complement(2385184..2386374) 1 NC_003197.1 permease 2386374 1253802 STM2280 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_461222.1 2385184 R 99287 CDS NP_461223.1 16765608 1253803 2386536..2387414 1 NC_003197.1 LysR family; LysR family transcriptional regulator 2387414 1253803 STM2281 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_461223.1 2386536 D 99287 CDS NP_461224.1 16765609 1253804 complement(2387530..2388600) 1 NC_003197.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 2388600 glpQ 1253804 glpQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerophosphodiester phosphodiesterase NP_461224.1 2387530 R 99287 CDS NP_461225.1 16765610 1253805 complement(2388605..2389963) 1 NC_003197.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter 2389963 glpT 1253805 glpT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sn-glycerol-3-phosphate transporter NP_461225.1 2388605 R 99287 CDS NP_461226.1 16765611 1253806 2390236..2391864 1 NC_003197.1 anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase large subunit 2391864 glpA 1253806 glpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sn-glycerol-3-phosphate dehydrogenase large subunit NP_461226.1 2390236 D 99287 CDS NP_461227.1 16765612 1253807 2391854..2393113 1 NC_003197.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase membrane anchor subunit 2393113 glpB 1253807 glpB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic glycerol-3-phosphate dehydrogenase membrane anchor subunit NP_461227.1 2391854 D 99287 CDS NP_461228.1 16765613 1253808 2393110..2394300 1 NC_003197.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase small subunit 2394300 glpC 1253808 glpC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sn-glycerol-3-phosphate dehydrogenase small subunit NP_461228.1 2393110 D 99287 CDS NP_461229.2 308065958 1253809 2394726..2395748 1 NC_003197.1 specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system; deubiquitinase SseL 2395748 sseL 1253809 sseL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 deubiquitinase SseL NP_461229.2 2394726 D 99287 CDS NP_461230.1 16765615 1253810 complement(2395858..2396034) 1 NC_003197.1 cytoplasmic protein 2396034 1253810 STM2288 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461230.1 2395858 R 99287 CDS NP_461231.1 16765616 1253811 complement(2396040..2396843) 1 NC_003197.1 2-keto-3-deoxy-L-rhamnonate aldolase 2396843 1253811 STM2289 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-keto-3-deoxy-L-rhamnonate aldolase NP_461231.1 2396040 R 99287 CDS NP_461232.1 16765617 1253812 complement(2396869..2398158) 1 NC_003197.1 MFS family transport protein 2398158 yfaV 1253812 yfaV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family transport protein NP_461232.1 2396869 R 99287 CDS NP_461233.1 16765618 1253813 complement(2398214..2399431) 1 NC_003197.1 L-rhamnonate dehydratase 2399431 yfaW 1253813 yfaW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-rhamnonate dehydratase NP_461233.1 2398214 R 99287 CDS NP_461234.1 16765619 1253814 complement(2399433..2400215) 1 NC_003197.1 transcriptional regulator 2400215 yfaX 1253814 yfaX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_461234.1 2399433 R 99287 CDS NP_461235.1 16765620 1253815 complement(2400465..2401661) 1 NC_003197.1 competence damage-inducible protein A 2401661 1253815 STM2293 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 competence damage-inducible protein A NP_461235.1 2400465 R 99287 CDS NP_461236.1 16765621 1253816 complement(2401776..2402423) 1 NC_003197.1 inner membrane protein 2402423 yfaZ 1253816 yfaZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461236.1 2401776 R 99287 CDS NP_461237.1 16765622 1253817 2402597..2403022 1 NC_003197.1 nucleoside triphosphatase NudI 2403022 nudI 1253817 nudI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleoside triphosphatase NudI NP_461237.1 2402597 D 99287 CDS NP_461238.1 16765623 1253818 complement(2403067..2403672) 1 NC_003197.1 ipopolysaccharide core heptose(II)-phosphate phosphatase 2403672 ais 1253818 ais Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ipopolysaccharide core heptose(II)-phosphate phosphatase NP_461238.1 2403067 R 99287 CDS NP_461239.2 161353593 1253819 2403971..2405110 1 NC_003197.1 catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2405110 yfbE 1253819 yfbE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase NP_461239.2 2403971 D 99287 CDS NP_461240.1 16765625 1253820 2405113..2406096 1 NC_003197.1 catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 2406096 pmrF 1253820 pmrF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase NP_461240.1 2405113 D 99287 CDS NP_461241.1 16765626 1253821 2406093..2408075 1 NC_003197.1 Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2408075 yfbG 1253821 yfbG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase NP_461241.1 2406093 D 99287 CDS NP_461242.1 16765627 1253822 2408072..2408971 1 NC_003197.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase 2408971 1253822 STM2300 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase NP_461242.1 2408072 D 99287 CDS NP_461243.1 16765628 1253823 2408968..2410614 1 NC_003197.1 catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase 2410614 arnT 1253823 arnT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase NP_461243.1 2408968 D 99287 CDS NP_461244.1 16765629 1253824 2410611..2410946 1 NC_003197.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE 2410946 1253824 STM2302 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE NP_461244.1 2410611 D 99287 CDS NP_461245.1 16765630 1253825 2410946..2411323 1 NC_003197.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF 2411323 1253825 STM2303 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF NP_461245.1 2410946 D 99287 CDS NP_461246.1 16765631 1253826 complement(2411318..2411575) 1 NC_003197.1 polymyxin b resistance protein PmrD (SW:PMRD_SALTY); signal transduction protein PmrD 2411575 pmrD 1253826 pmrD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 signal transduction protein PmrD NP_461246.1 2411318 R 99287 CDS NP_461247.1 16765632 1253827 complement(2411673..2413040) 1 NC_003197.1 O-succinylbenzoic acid-CoA ligase (SW:MENE_SALTY); O-succinylbenzoic acid--CoA ligase 2413040 menE 1253827 menE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 O-succinylbenzoic acid--CoA ligase NP_461247.1 2411673 R 99287 CDS NP_461248.1 16765633 1253828 complement(2413037..2413999) 1 NC_003197.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 2413999 menC 1253828 menC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 O-succinylbenzoate synthase NP_461248.1 2413037 R 99287 CDS NP_461249.1 16765634 1253829 complement(2413999..2414856) 1 NC_003197.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; 1,4-dihydroxy-2-naphthoyl-CoA synthase 2414856 menB 1253829 menB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1,4-dihydroxy-2-naphthoyl-CoA synthase NP_461249.1 2413999 R 99287 CDS NP_461250.1 16765635 1253830 complement(2414871..2415629) 1 NC_003197.1 catalyzes the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate; and can also catalyze the hydrolysis of the thioester bond in palmitoyl-CoA; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 2415629 yfbB 1253830 yfbB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase NP_461250.1 2414871 R 99287 CDS NP_461251.1 16765636 1253831 complement(2415626..2417296) 1 NC_003197.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 2417296 menD 1253831 menD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase NP_461251.1 2415626 R 99287 CDS NP_461252.1 16765637 1253832 complement(2417382..2418677) 1 NC_003197.1 synthesizes isochorismate acid from chorismate; isochorismate synthase 2418677 menF 1253832 menF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 isochorismate synthase NP_461252.1 2417382 R 99287 CDS NP_461253.2 409994424 1253833 complement(2418778..2419083) 1 NC_003197.1 inner membrane protein 2419083 elaB 1253833 elaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461253.2 2418778 R 99287 CDS NP_461254.1 16765639 1253834 complement(2419138..2419599) 1 NC_003197.1 acyltransferase 2419599 elaA 1253834 elaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acyltransferase NP_461254.1 2419138 R 99287 CDS NP_461255.1 16765640 1253835 2419660..2420577 1 NC_003197.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease BN 2420577 elaC 1253835 elaC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonuclease BN NP_461255.1 2419660 D 99287 CDS NP_461256.1 16765641 1253836 2420643..2421644 1 NC_003197.1 chemotaxis signal transduction protein 2421644 1253836 STM2314 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chemotaxis signal transduction protein NP_461256.1 2420643 D 99287 CDS NP_461257.1 16765642 1253837 complement(2421685..2423466) 1 NC_003197.1 von Willebrand factor; contains vWF type A domain; hypothetical protein 2423466 1253837 STM2315 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461257.1 2421685 R 99287 CDS NP_461258.2 39546340 1253838 complement(2424354..2425811) 1 NC_003197.1 Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit N 2425811 nuoN 1253838 nuoN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NADH-quinone oxidoreductase subunit N NP_461258.2 2424354 R 99287 CDS NP_461259.1 16765644 1253839 complement(2425818..2427347) 1 NC_003197.1 Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit M 2427347 nuoM 1253839 nuoM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NADH-quinone oxidoreductase subunit M NP_461259.1 2425818 R 99287 CDS NP_461260.1 16765645 1253840 complement(2427661..2429502) 1 NC_003197.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH-quinone oxidoreductase subunit L 2429502 nuoL 1253840 nuoL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NADH-quinone oxidoreductase subunit L NP_461260.1 2427661 R 99287 CDS NP_461261.1 16765646 1253841 complement(2429499..2429801) 1 NC_003197.1 Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit K 2429801 nuoK 1253841 nuoK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NADH-quinone oxidoreductase subunit K NP_461261.1 2429499 R 99287 CDS NP_461262.1 16765647 1253842 complement(2429798..2430352) 1 NC_003197.1 Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit J 2430352 nuoJ 1253842 nuoJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NADH-quinone oxidoreductase subunit J NP_461262.1 2429798 R 99287 CDS NP_461263.1 16765648 1253843 complement(2430363..2430905) 1 NC_003197.1 Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit I 2430905 nuoI 1253843 nuoI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NADH-quinone oxidoreductase subunit I NP_461263.1 2430363 R 99287 CDS NP_461264.1 16765649 1253844 complement(2430920..2431897) 1 NC_003197.1 Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit H 2431897 nuoH 1253844 nuoH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NADH-quinone oxidoreductase subunit H NP_461264.1 2430920 R 99287 CDS NP_461265.2 39546341 1253845 complement(2431894..2434620) 1 NC_003197.1 Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit G 2434620 nuoG 1253845 nuoG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NADH-quinone oxidoreductase subunit G NP_461265.2 2431894 R 99287 CDS NP_461266.1 16765651 1253846 complement(2434651..2435988) 1 NC_003197.1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH-quinone oxidoreductase subunit F 2435988 nuoF 1253846 nuoF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NADH-quinone oxidoreductase subunit F NP_461266.1 2434651 R 99287 CDS NP_461267.1 16765652 1253847 complement(2435985..2436485) 1 NC_003197.1 Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit E 2436485 nuoE 1253847 nuoE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NADH-quinone oxidoreductase subunit E NP_461267.1 2435985 R 99287 CDS NP_461268.1 16765653 1253848 complement(2436488..2438290) 1 NC_003197.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH-ubiquinone oxidoreductase subunit C/D 2438290 nuoC 1253848 nuoC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional NADH-ubiquinone oxidoreductase subunit C/D NP_461268.1 2436488 R 99287 CDS NP_461269.1 16765654 1253849 complement(2438377..2439039) 1 NC_003197.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH-quinone oxidoreductase subunit B 2439039 nuoB 1253849 nuoB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NADH-quinone oxidoreductase subunit B NP_461269.1 2438377 R 99287 CDS NP_461270.1 16765655 1253850 complement(2439055..2439498) 1 NC_003197.1 Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit A 2439498 nuoA 1253850 nuoA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NADH-quinone oxidoreductase subunit A NP_461270.1 2439055 R 99287 CDS NP_461271.1 16765656 1253851 complement(2439893..2440045) 1 NC_003197.1 cytoplasmic protein 2440045 1253851 STM2329 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461271.1 2439893 R 99287 CDS NP_461272.1 16765657 1253852 complement(2440125..2441063) 1 NC_003197.1 LysR family NADH dehydrogenase transcriptional repressor 2441063 lrhA 1253852 lrhA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family NADH dehydrogenase transcriptional repressor NP_461272.1 2440125 R 99287 CDS NP_461273.1 16765658 1253853 2441995..2443209 1 NC_003197.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2443209 yfbQ 1253853 yfbQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aminotransferase AlaT NP_461273.1 2441995 D 99287 CDS NP_461274.1 16765659 1253854 2443303..2443902 1 NC_003197.1 5'-deoxynucleotidase 2443902 1253854 STM2332 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 5'-deoxynucleotidase NP_461274.1 2443303 D 99287 CDS NP_461275.1 16765660 1253855 complement(2443994..2445820) 1 NC_003197.1 response regulator 2445820 yfbS 1253855 yfbS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 response regulator NP_461275.1 2443994 R 99287 CDS NP_461276.2 161353592 1253856 complement(2445897..2446556) 1 NC_003197.1 phosphatase 2446556 yfbT 1253856 yfbT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphatase NP_461276.2 2445897 R 99287 CDS NP_461277.1 16765662 1253857 complement(2446567..2447061) 1 NC_003197.1 hypothetical protein 2447061 1253857 STM2335 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461277.1 2446567 R 99287 CDS NP_461278.1 16765663 1253858 complement(2447144..2447599) 1 NC_003197.1 hypothetical protein 2447599 1253858 STM2336 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461278.1 2447144 R 99287 CDS NP_461279.1 16765664 1253859 2447939..2449141 1 NC_003197.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2449141 ackA 1253859 ackA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetate kinase NP_461279.1 2447939 D 99287 CDS NP_461280.1 16765665 1253860 2449218..2451362 1 NC_003197.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2451362 pta 1253860 pta Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphate acetyltransferase NP_461280.1 2449218 D 99287 CDS NP_461281.1 16765666 1253861 2451580..2453100 1 NC_003197.1 integral membrane protein 2453100 yfcC 1253861 yfcC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integral membrane protein NP_461281.1 2451580 D 99287 CDS NP_461282.1 16765667 1253862 complement(2453149..2454102) 1 NC_003197.1 transketolase 2454102 1253862 STM2340 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transketolase NP_461282.1 2453149 R 99287 CDS NP_461283.1 16765668 1253863 complement(2454095..2454925) 1 NC_003197.1 transketolase 2454925 1253863 STM2341 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transketolase NP_461283.1 2454095 R 99287 CDS NP_461284.2 161353591 1253864 complement(2454922..2456319) 1 NC_003197.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 2456319 ulaA 1253864 ulaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system ascorbate-specific transporter subunit IIC NP_461284.2 2454922 R 99287 CDS NP_461285.1 16765670 1253865 complement(2456334..2456606) 1 NC_003197.1 PTS system ascorbate-specific transporter subunit IIB 2456606 1253865 STM2343 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system ascorbate-specific transporter subunit IIB NP_461285.1 2456334 R 99287 CDS NP_461286.1 16765671 1253866 complement(2456687..2457130) 1 NC_003197.1 PTS system transporter subunit IIA 2457130 1253866 STM2344 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system transporter subunit IIA NP_461286.1 2456687 R 99287 CDS YP_006892399.1 409994425 13865723 2457129..2457302 1 NC_003197.1 hypothetical protein 2457302 13865723 STM05425 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892399.1 2457129 D 99287 CDS NP_461287.1 16765672 1253867 2457383..2458402 1 NC_003197.1 transcriptional regulator 2458402 1253867 STM2345 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_461287.1 2457383 D 99287 CDS NP_461288.1 16765673 1253868 complement(2458408..2458962) 1 NC_003197.1 Nudix hydrolase 2458962 1253868 STM2346 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Nudix hydrolase NP_461288.1 2458408 R 99287 CDS NP_461289.1 16765674 1253869 complement(2459019..2459570) 1 NC_003197.1 phosphodiesterase 2459570 yfcE 1253869 yfcE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphodiesterase NP_461289.1 2459019 R 99287 CDS NP_461290.1 16765675 1253870 complement(2459626..2460270) 1 NC_003197.1 glutathione S-transferase 2460270 yfcF 1253870 yfcF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione S-transferase NP_461290.1 2459626 R 99287 CDS NP_461291.1 16765676 1253871 2460413..2461060 1 NC_003197.1 glutathione S-transferase 2461060 yfcG 1253871 yfcG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione S-transferase NP_461291.1 2460413 D 99287 CDS NP_461292.1 16765677 1253872 2461186..2462079 1 NC_003197.1 sugar nucleotide epimerase 2462079 yfcH 1253872 yfcH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar nucleotide epimerase NP_461292.1 2461186 D 99287 CDS NP_461293.1 16765678 1253873 complement(2462131..2462907) 1 NC_003197.1 histidine transport ATP-binding protein HisP (SW:HISP_SALTY); ABC superfamily ATP-binding protein; histidine ABC transporter ATP-binding protein HisP 2462907 hisP 1253873 hisP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 histidine ABC transporter ATP-binding protein HisP NP_461293.1 2462131 R 99287 CDS NP_461294.1 16765679 1253874 complement(2462918..2463625) 1 NC_003197.1 histidine transport system permease protein HisM (SW:HISM_SALTY); ABC superfamily membrane protein; histidine ABC transporter permease HisM 2463625 hisM 1253874 hisM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 histidine ABC transporter permease HisM NP_461294.1 2462918 R 99287 CDS NP_461295.1 16765680 1253875 complement(2463622..2464308) 1 NC_003197.1 histidine transport system permease protein HisQ (SW:HISQ_SALTY); ABC superfamily membrane protein; histidine ABC transporter permease HisQ 2464308 hisQ 1253875 hisQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 histidine ABC transporter permease HisQ NP_461295.1 2463622 R 99287 CDS NP_461296.1 16765681 1253876 complement(2464491..2465273) 1 NC_003197.1 histidine-binding periplasmic protein precursor; HBP (SW:HISJ_SALTY); ABC superfamily binding protein; histidine ABC transporter substrate-binding protein HisJ 2465273 hisJ 1253876 hisJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 histidine ABC transporter substrate-binding protein HisJ NP_461296.1 2464491 R 99287 CDS NP_461297.1 16765682 1253877 complement(2465511..2466293) 1 NC_003197.1 lysine-arginine-ornithine-binding periplasmic protein precursor; LAO-binding protein (SW:ARGT_SALTY); ABC superfamily binding protein; lysine/arginine/ornithine ABC transporter substrate-binding protein 2466293 argT 1253877 argT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lysine/arginine/ornithine ABC transporter substrate-binding protein NP_461297.1 2465511 R 99287 CDS NP_461298.1 16765683 1253878 complement(2466582..2467151) 1 NC_003197.1 with UbiD acts to catalyze the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein 2467151 ubiX 1253878 ubiX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein NP_461298.1 2466582 R 99287 CDS NP_461299.1 16765684 1253879 complement(2467178..2468584) 1 NC_003197.1 amino acid transporter 2468584 1253879 STM2357 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amino acid transporter NP_461299.1 2467178 R 99287 CDS NP_461300.1 16765685 1253880 complement(2468648..2469751) 1 NC_003197.1 cytoplasmic protein 2469751 1253880 STM2358 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461300.1 2468648 R 99287 CDS NP_461301.1 16765686 1253881 complement(2469753..2471174) 1 NC_003197.1 amino acid transporter 2471174 1253881 STM2359 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amino acid transporter NP_461301.1 2469753 R 99287 CDS NP_461302.1 16765687 1253882 complement(2471265..2472662) 1 NC_003197.1 diaminopimelate decarboxylase 2472662 1253882 STM2360 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diaminopimelate decarboxylase NP_461302.1 2471265 R 99287 CDS NP_461303.1 16765688 1253883 2472873..2474300 1 NC_003197.1 regulatory protein 2474300 1253883 STM2361 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_461303.1 2472873 D 99287 CDS NP_461304.1 16765689 1253884 complement(2474336..2475853) 1 NC_003197.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2475853 purF 1253884 purF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amidophosphoribosyltransferase NP_461304.1 2474336 R 99287 CDS NP_461305.1 16765690 1253885 complement(2475891..2476379) 1 NC_003197.1 membrane protein required for colicin V production; colicin V production protein 2476379 cvpA 1253885 cvpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 colicin V production protein NP_461305.1 2475891 R 99287 CDS NP_461306.1 16765691 1253886 complement(2476690..2477364) 1 NC_003197.1 lipoprotein 2477364 dedD 1253886 dedD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein NP_461306.1 2476690 R 99287 CDS NP_461307.1 16765692 1253887 complement(2477354..2478622) 1 NC_003197.1 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2478622 folC 1253887 folC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase NP_461307.1 2477354 R 99287 CDS NP_461308.1 16765693 1253888 complement(2478690..2479604) 1 NC_003197.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxyl transferase subunit beta 2479604 accD 1253888 accD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyl-CoA carboxyl transferase subunit beta NP_461308.1 2478690 R 99287 CDS NP_461309.1 16765694 1253889 complement(2479754..2480413) 1 NC_003197.1 DedA family; inner membrane protein 2480413 1253889 STM2367 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461309.1 2479754 R 99287 CDS NP_461310.1 16765695 1253890 complement(2480462..2481274) 1 NC_003197.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2481274 truA 1253890 truA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA pseudouridine synthase A NP_461310.1 2480462 R 99287 CDS NP_461311.1 16765696 1253891 complement(2481274..2482287) 1 NC_003197.1 semialdehyde dehydrogenase 2482287 usg 1253891 usg Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 semialdehyde dehydrogenase NP_461311.1 2481274 R 99287 CDS NP_461312.1 16765697 1253892 complement(2482355..2483491) 1 NC_003197.1 catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase 2483491 pdxB 1253892 pdxB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 erythronate-4-phosphate dehydrogenase NP_461312.1 2482355 R 99287 CDS NP_461313.1 16765698 1253893 2483595..2484596 1 NC_003197.1 in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 2484596 flk 1253893 flk Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flagella biosynthesis regulator NP_461313.1 2483595 D 99287 CDS NP_461314.1 16765699 1253894 complement(2484593..2485771) 1 NC_003197.1 hypothetical protein 2485771 1253894 STM2372 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461314.1 2484593 R 99287 CDS NP_461315.1 16765700 1253895 complement(2485951..2486325) 1 NC_003197.1 cytoplasmic protein 2486325 1253895 STM2373 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461315.1 2485951 R 99287 CDS NP_461316.1 16765701 1253896 2486498..2486746 1 NC_003197.1 regulatory protein 2486746 1253896 STM2374 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_461316.1 2486498 D 99287 CDS NP_461317.1 16765702 1253897 2486915..2487283 1 NC_003197.1 cytoplasmic protein 2487283 1253897 STM2375 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461317.1 2486915 D 99287 CDS NP_461318.1 16765703 1253898 2487283..2487801 1 NC_003197.1 periplasmic protein 2487801 1253898 STM2376 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_461318.1 2487283 D 99287 CDS NP_461319.1 16765704 1253899 complement(2487868..2488524) 1 NC_003197.1 inner membrane protein 2488524 1253899 STM2377 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461319.1 2487868 R 99287 CDS NP_461320.1 16765705 1253900 complement(2488622..2489836) 1 NC_003197.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 2489836 fabB 1253900 fabB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-oxoacyl-ACP synthase NP_461320.1 2488622 R 99287 CDS NP_461321.2 161353590 1253901 2489996..2491996 1 NC_003197.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase 2491996 mnmC 1253901 mnmC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase NP_461321.2 2489996 D 99287 CDS NP_461322.1 16765707 1253902 complement(2492048..2492323) 1 NC_003197.1 cytoplasmic protein 2492323 yfcL 1253902 yfcL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461322.1 2492048 R 99287 CDS NP_461323.1 16765708 1253903 complement(2492356..2492904) 1 NC_003197.1 cytoplasmic protein 2492904 yfcM 1253903 yfcM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461323.1 2492356 R 99287 CDS NP_461324.1 16765709 1253904 complement(2492904..2493713) 1 NC_003197.1 inner membrane protein 2493713 yfcA 1253904 yfcA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461324.1 2492904 R 99287 CDS NP_461325.1 16765710 1253905 complement(2493713..2494537) 1 NC_003197.1 penicillin-insensitive murein endopeptidase 2494537 mepA 1253905 mepA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 penicillin-insensitive murein endopeptidase NP_461325.1 2493713 R 99287 CDS NP_461326.1 16765711 1253906 complement(2494541..2495626) 1 NC_003197.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2495626 aroC 1253906 aroC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chorismate synthase NP_461326.1 2494541 R 99287 CDS NP_461327.1 16765712 1253907 complement(2495662..2496594) 1 NC_003197.1 involved in methylation of ribosomal protein L3; 50S ribosomal protein L3 glutamine methyltransferase 2496594 yfcB 1253907 yfcB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L3 glutamine methyltransferase NP_461327.1 2495662 R 99287 CDS NP_461328.1 16765713 1253908 2496760..2497311 1 NC_003197.1 contains Smr domain; hypothetical protein 2497311 1253908 STM2386 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461328.1 2496760 D 99287 CDS NP_461329.1 16765714 1253909 complement(2497411..2497896) 1 NC_003197.1 phosphohistidine phosphatase 2497896 sixA 1253909 sixA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphohistidine phosphatase NP_461329.1 2497411 R 99287 CDS NP_461330.1 16765715 1253910 complement(2498105..2500252) 1 NC_003197.1 multifunctional fatty acid oxidation complex subunit alpha 2500252 fadJ 1253910 fadJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multifunctional fatty acid oxidation complex subunit alpha NP_461330.1 2498105 R 99287 CDS NP_461331.1 16765716 1253911 complement(2500252..2501562) 1 NC_003197.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 2501562 fadI 1253911 fadI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-ketoacyl-CoA thiolase NP_461331.1 2500252 R 99287 CDS NP_461332.1 16765717 1253912 complement(2501740..2502024) 1 NC_003197.1 cytoplasmic protein 2502024 yfcZ 1253912 yfcZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461332.1 2501740 R 99287 CDS NP_461333.1 16765718 1253913 2502389..2503702 1 NC_003197.1 long-chain fatty acid transporter 2503702 fadL 1253913 fadL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 long-chain fatty acid transporter NP_461333.1 2502389 D 99287 CDS NP_461334.1 16765719 1253914 complement(2503763..2504518) 1 NC_003197.1 lipoprotein 2504518 vacJ 1253914 vacJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein NP_461334.1 2503763 R 99287 CDS NP_461335.1 16765720 1253915 2504807..2505748 1 NC_003197.1 inner membrane protein 2505748 yfdC 1253915 yfdC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461335.1 2504807 D 99287 CDS NP_461336.1 16765721 1253917 complement(2506055..2506993) 1 NC_003197.1 outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA; outer membrane protease E 2506993 pgtE 1253917 pgtE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protease E NP_461336.1 2506055 R 99287 CDS NP_461337.1 16765722 1253918 complement(2507261..2508508) 1 NC_003197.1 phosphoglycerate transport system transcriptional regulatory protein PgtA (SW:PGTA_SALTY); phosphoglycerate transport; phosphoglycerate transport system transcriptional regulator PgtA 2508508 pgtA 1253918 pgtA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoglycerate transport system transcriptional regulator PgtA NP_461337.1 2507261 R 99287 CDS NP_461338.1 16765723 1253919 complement(2508498..2510504) 1 NC_003197.1 protein for signal transmission; PgtB (SW:PGTB_SALTY); phosphoglycerate transport; phosphoglycerate transport system sensor protein PgtB 2510504 pgtB 1253919 pgtB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoglycerate transport system sensor protein PgtB NP_461338.1 2508498 R 99287 CDS NP_461339.1 16765724 1253920 complement(2510501..2511694) 1 NC_003197.1 protein for signal transmission; PgtC (SW:PGTC_SALTY); phosphoglycerate transport; phosphoglycerate transport regulatory protein PgtC 2511694 pgtC 1253920 pgtC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoglycerate transport regulatory protein PgtC NP_461339.1 2510501 R 99287 CDS NP_461340.1 16765725 1253921 2512130..2513521 1 NC_003197.1 phosphoglycerate transporter protein (SW:PGTP_SALTY); phosphoglycerate transport; phosphoglycerate transporter 2513521 pgtP 1253921 pgtP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoglycerate transporter NP_461340.1 2512130 D 99287 CDS NP_461341.1 16765726 1253922 complement(2513797..2514039) 1 NC_003197.1 inner membrane protein 2514039 1253922 STM2400 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461341.1 2513797 R 99287 CDS NP_461342.1 16765727 1253923 2514561..2515481 1 NC_003197.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; palmitoleoyl-ACP-dependent acyltransferase 2515481 ddg 1253923 ddg Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 palmitoleoyl-ACP-dependent acyltransferase NP_461342.1 2514561 D 99287 CDS NP_461343.1 16765728 1253924 complement(2516005..2517243) 1 NC_003197.1 aminotransferase 2517243 yfdZ 1253924 yfdZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aminotransferase NP_461343.1 2516005 R 99287 CDS NP_461344.1 16765729 1253925 complement(2517964..2518929) 1 NC_003197.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 2518929 glk 1253925 glk Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucokinase NP_461344.1 2517964 R 99287 CDS NP_461345.1 16765730 1253926 2519133..2520368 1 NC_003197.1 ion transport protein 2520368 1253926 STM2404 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ion transport protein NP_461345.1 2519133 D 99287 CDS NP_461346.1 16765731 1253927 complement(2520388..2522040) 1 NC_003197.1 indolepyruvate decarboxylase 2522040 1253927 STM2405 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 indolepyruvate decarboxylase NP_461346.1 2520388 R 99287 CDS NP_461347.1 16765732 1253928 2522220..2523218 1 NC_003197.1 oxidoreductase 2523218 1253928 STM2406 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_461347.1 2522220 D 99287 CDS NP_461348.1 16765733 1253929 2523332..2523658 1 NC_003197.1 periplasmic protein 2523658 ypeC 1253929 ypeC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_461348.1 2523332 D 99287 CDS NP_461349.1 16765734 1253930 complement(2523719..2524960) 1 NC_003197.1 manganese transport protein MntH (SW:MNTH_SALTY); Nramp family; divalent metal cation transporter MntH 2524960 mntH 1253930 mntH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 divalent metal cation transporter MntH NP_461349.1 2523719 R 99287 CDS NP_461350.1 16765735 1253931 2525303..2526505 1 NC_003197.1 NUP family nucleoside transport protein 2526505 nupC 1253931 nupC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NUP family nucleoside transport protein NP_461350.1 2525303 D 99287 CDS NP_461351.1 16765736 1253932 complement(2526558..2528747) 1 NC_003197.1 diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain 2; diguanylate cyclase/phosphodiesterase domain-containing protein 2528747 yfeA 1253932 yfeA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diguanylate cyclase/phosphodiesterase domain-containing protein NP_461351.1 2526558 R 99287 CDS NP_461352.1 16765737 1253935 2529353..2529715 1 NC_003197.1 negative regulator 2529715 yfeC 1253935 yfeC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 negative regulator NP_461352.1 2529353 D 99287 CDS NP_461353.1 16765738 1253936 2529717..2530109 1 NC_003197.1 negative regulator 2530109 yfeD 1253936 yfeD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 negative regulator NP_461353.1 2529717 D 99287 CDS NP_461354.1 16765739 1253937 complement(2530163..2531578) 1 NC_003197.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamate--tRNA ligase 2531578 gltX 1253937 gltX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamate--tRNA ligase NP_461354.1 2530163 R 99287 CDS NP_461355.1 16765740 1253942 complement(2532394..2533278) 1 NC_003197.1 DNA-binding transcriptional activator XapR 2533278 xapR 1253942 xapR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional activator XapR NP_461355.1 2532394 R 99287 CDS NP_945166.1 39546342 2673749 complement(2533330..2533488) 1 NC_003197.1 hypothetical protein 2533488 2673749 STM2420.1n Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945166.1 2533330 R 99287 CDS NP_461356.1 16765741 1253943 complement(2533547..2534803) 1 NC_003197.1 MFS superfamily xanthosine permease 2534803 xapB 1253943 xapB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS superfamily xanthosine permease NP_461356.1 2533547 R 99287 CDS YP_006892400.1 409994426 13865713 complement(2534858..2535691) 1 NC_003197.1 purine nucleoside phosphorylase 2535691 13865713 STM05445 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 purine nucleoside phosphorylase YP_006892400.1 2534858 R 99287 CDS NP_461358.1 16765743 1253945 2535947..2536708 1 NC_003197.1 outer membrane protein 2536708 yfeN 1253945 yfeN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_461358.1 2535947 D 99287 CDS NP_461359.1 16765744 1253946 complement(2536770..2537696) 1 NC_003197.1 LysR family transcriptional regulator 2537696 yfeR 1253946 yfeR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_461359.1 2536770 R 99287 CDS NP_461360.1 16765745 1253947 2537786..2538784 1 NC_003197.1 Na+-dependent transporter 2538784 yfeH 1253947 yfeH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Na+-dependent transporter NP_461360.1 2537786 D 99287 CDS NP_461361.2 409994427 1253948 complement(2538781..2538999) 1 NC_003197.1 cytoplasmic protein 2538999 1253948 STM2426 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461361.2 2538781 R 99287 CDS NP_461362.1 16765747 1253949 complement(2539001..2541016) 1 NC_003197.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; DNA ligase 2541016 ligA 1253949 ligA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA ligase NP_461362.1 2539001 R 99287 CDS NP_461363.1 16765748 1253950 complement(2541088..2542074) 1 NC_003197.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA 2542074 zipA 1253950 zipA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division protein ZipA NP_461363.1 2541088 R 99287 CDS NP_461364.1 16765749 1253951 2542306..2543067 1 NC_003197.1 role in sulfur assimilation; sulfate transport protein CysZ 2543067 cysZ 1253951 cysZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfate transport protein CysZ NP_461364.1 2542306 D 99287 CDS NP_461365.1 16765750 1253952 2543231..2544202 1 NC_003197.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2544202 cysK 1253952 cysK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cysteine synthase A NP_461365.1 2543231 D 99287 CDS NP_461366.1 16765751 1253953 2544586..2544843 1 NC_003197.1 phosphocarrier protein HPR; histidine-containing protein (SW:PTHP_ECOLI); PTS family, Hpr protein; PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr 2544843 ptsH 1253953 ptsH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr NP_461366.1 2544586 D 99287 CDS NP_461367.1 16765752 1253954 2544892..2546619 1 NC_003197.1 Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 2546619 ptsI 1253954 ptsI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoenolpyruvate-protein phosphotransferase NP_461367.1 2544892 D 99287 CDS NP_461368.1 16765753 1253955 2546660..2547169 1 NC_003197.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit IIA 2547169 crr 1253955 crr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system glucose-specific transporter subunit IIA NP_461368.1 2546660 D 99287 CDS NP_461369.1 16765754 1253956 complement(2547318..2547557) 1 NC_003197.1 cytoplasmic protein 2547557 1253956 STM2434 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461369.1 2547318 R 99287 CDS NP_461370.1 16765755 1253957 complement(2547554..2548420) 1 NC_003197.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase 2548420 pdxK 1253957 pdxK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyridoxal kinase NP_461370.1 2547554 R 99287 CDS NP_461371.1 16765756 1253958 2548503..2549795 1 NC_003197.1 transcriptional regulator PtsJ (SW:PTSJ_SALTY); GntR family; transcriptional regulator PtsJ 2549795 ptsJ 1253958 ptsJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator PtsJ NP_461371.1 2548503 D 99287 CDS NP_461372.1 16765757 1253959 2549810..2550529 1 NC_003197.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2550529 yfeJ 1253959 yfeJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamine amidotransferase NP_461372.1 2549810 D 99287 CDS NP_461373.1 16765758 1253960 2550588..2550968 1 NC_003197.1 hypothetical 13.3 kDa protein in pdxK-cysM intergenic region (SW:YFEK_SALTY); hypothetical protein 2550968 1253960 STM2438 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461373.1 2550588 D 99287 CDS NP_461374.1 16765759 1253961 2550981..2551520 1 NC_003197.1 hypothetical 20.5 kDa protein in pdxK-cysM intergenic region; hypothetical protein 2551520 1253961 STM2439 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461374.1 2550981 D 99287 CDS NP_461375.1 16765760 1253962 complement(2551651..2552562) 1 NC_003197.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 2552562 cysM 1253962 cysM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cysteine synthase B NP_461375.1 2551651 R 99287 CDS NP_461376.1 16765761 1253963 complement(2552630..2553727) 1 NC_003197.1 sulfate transport atp-binding protein CYSA (SW:CYSA_SALTY); ABC superfamily ATP-binding protein; chromate resistance; sulfate/thiosulfate ABC transporter ATP-binding protein CysA 2553727 cysA 1253963 cysA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfate/thiosulfate ABC transporter ATP-binding protein CysA NP_461376.1 2552630 R 99287 CDS NP_461377.1 16765762 1253964 complement(2553717..2554592) 1 NC_003197.1 Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate ABC transporter permease CysW 2554592 cysW 1253964 cysW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfate/thiosulfate ABC transporter permease CysW NP_461377.1 2553717 R 99287 CDS NP_461378.1 16765763 1253965 complement(2554592..2555425) 1 NC_003197.1 sulfate/thiosulfateABC transporter permease CysU 2555425 cysU 1253965 cysU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfate/thiosulfateABC transporter permease CysU NP_461378.1 2554592 R 99287 CDS NP_461379.1 16765764 1253966 complement(2555425..2556441) 1 NC_003197.1 thiosulfate-binding protein (SW:CYSP_SALTY); ABC superfamily binding protein; sulfate/thiosulfate ABC transporter substrate-binding protein CysT 2556441 cysP 1253966 cysP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfate/thiosulfate ABC transporter substrate-binding protein CysT NP_461379.1 2555425 R 99287 CDS NP_461380.1 16765765 1253967 complement(2556599..2557390) 1 NC_003197.1 oxidoreductase 2557390 ucpA 1253967 ucpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_461380.1 2556599 R 99287 CDS NP_461381.1 16765766 1253968 complement(2557628..2558527) 1 NC_003197.1 iron-dependent peroxidase 2558527 1253968 STM2446 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 iron-dependent peroxidase NP_461381.1 2557628 R 99287 CDS NP_461382.1 16765767 1253969 complement(2558622..2559197) 1 NC_003197.1 outer membrane lipoprotein 2559197 1253969 STM2447 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_461382.1 2558622 R 99287 CDS NP_461383.1 16765768 1253970 complement(2559259..2559708) 1 NC_003197.1 inner membrane protein 2559708 yfeZ 1253970 yfeZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461383.1 2559259 R 99287 CDS NP_461384.2 39546343 1253971 complement(2559695..2560120) 1 NC_003197.1 acetyltransferase 2560120 1253971 STM2449.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyltransferase NP_461384.2 2559695 R 99287 CDS NP_461385.1 16765770 1253972 2560333..2561202 1 NC_003197.1 probable N-acetylmuramoyl-L-alanine amidase AMIA (SW:AMIA_SALTY); N-acetylmuramoyl-l-alanine amidase I 2561202 amiA 1253972 amiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-acetylmuramoyl-l-alanine amidase I NP_461385.1 2560333 D 99287 CDS NP_461386.1 16765771 1253973 2561205..2562104 1 NC_003197.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2562104 hemF 1253973 hemF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 coproporphyrinogen III oxidase NP_461386.1 2561205 D 99287 CDS NP_461387.1 16765772 1253974 2562125..2562454 1 NC_003197.1 hypothetical protein in eutR-hemF intergenic region; ORF33 (SW:YPFK_SALTY); hypothetical protein 2562454 1253974 STM2452 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461387.1 2562125 D 99287 CDS NP_461388.1 16765773 1253975 2562583..2563860 1 NC_003197.1 hypothetical 30.0 kDa protein in eutR-hemF intergenic region (ORF79) (SW:YPFL_SALTY); hypothetical protein 2563860 1253975 STM2453 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461388.1 2562583 D 99287 CDS NP_461389.1 16765774 1253976 complement(2564060..2565112) 1 NC_003197.1 activates the transcription of the ethanolamine utilization operon; HTH-type transcriptional regulator EutR 2565112 eutR 1253976 eutR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator EutR NP_461389.1 2564060 R 99287 CDS NP_461390.1 16765775 1253977 complement(2565160..2565654) 1 NC_003197.1 ethanolamine utilization protein EutK (SW:EUTK_SALTY); carboxysome structural protein EutK 2565654 eutK 1253977 eutK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carboxysome structural protein EutK NP_461390.1 2565160 R 99287 CDS NP_461391.1 16765776 1253978 complement(2565667..2566326) 1 NC_003197.1 ethanolamine utilization protein EutL (SW:EUTL_SALTY); carboxysome structural protein EutL 2566326 eutL 1253978 eutL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carboxysome structural protein EutL NP_461391.1 2565667 R 99287 CDS NP_461392.1 16765777 1253979 complement(2566336..2567232) 1 NC_003197.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit EutC 2567232 eutC 1253979 eutC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ethanolamine ammonia-lyase small subunit EutC NP_461392.1 2566336 R 99287 CDS NP_461393.1 16765778 1253980 complement(2567251..2568612) 1 NC_003197.1 ethanolamine ammonia-lyase heavy chain (SW:EUTB_SALTY); ethanolamine ammonia-lyase large subunit EutB 2568612 eutB 1253980 eutB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ethanolamine ammonia-lyase large subunit EutB NP_461393.1 2567251 R 99287 CDS NP_461394.1 16765779 1253981 complement(2568624..2570027) 1 NC_003197.1 reactivating factor for ethanolamine ammonia lyase; ethanolamine utilization protein EutA 2570027 eutA 1253981 eutA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ethanolamine utilization protein EutA NP_461394.1 2568624 R 99287 CDS NP_461395.1 16765780 1253982 complement(2570024..2571250) 1 NC_003197.1 ethanolamine utilization protein EutH (SW:EUTH_SALTY); ethanolamine transporter EutH 2571250 eutH 1253982 eutH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ethanolamine transporter EutH NP_461395.1 2570024 R 99287 CDS NP_461396.1 16765781 1253983 complement(2571370..2572557) 1 NC_003197.1 ethanolamine utilization protein EutG (SW:EUTG_SALTY); ethanol dehydrogenase EutG 2572557 eutG 1253983 eutG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ethanol dehydrogenase EutG NP_461396.1 2571370 R 99287 CDS NP_461397.1 16765782 1253984 complement(2572547..2573386) 1 NC_003197.1 ethanolamine utilization protein EutJ 2573386 eutJ 1253984 eutJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ethanolamine utilization protein EutJ NP_461397.1 2572547 R 99287 CDS NP_461398.1 16765783 1253985 complement(2573397..2574800) 1 NC_003197.1 invovled in ethanolamine utilization protein EutE (SW:EUTE_SALTY); aldehyde oxidoreductase EutE 2574800 eutE 1253985 eutE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aldehyde oxidoreductase EutE NP_461398.1 2573397 R 99287 CDS NP_461399.2 409994428 1253986 complement(2574812..2575099) 1 NC_003197.1 involved in ethanolamine utilization protein EutN (SW:EUTN_SALTY); microcompartment shell protein EutN 2575099 eutN 1253986 eutN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 microcompartment shell protein EutN NP_461399.2 2574812 R 99287 CDS NP_461400.1 16765785 1253987 complement(2575212..2575502) 1 NC_003197.1 involved in ethanolamine utilization protein EutM (SW:EUTM_SALTY); carboxysome structural protein EutM 2575502 eutM 1253987 eutM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carboxysome structural protein EutM NP_461400.1 2575212 R 99287 CDS NP_461401.1 16765786 1253988 complement(2575543..2576559) 1 NC_003197.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase EutD 2576559 eutD 1253988 eutD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphotransacetylase EutD NP_461401.1 2575543 R 99287 CDS NP_461402.1 16765787 1253989 complement(2576556..2577359) 1 NC_003197.1 ethanolamine utilization cobalamin adenosyltransferase (SW:EUTT_SALTY); cobalamin adenosyltransferase EutT 2577359 eutT 1253989 eutT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalamin adenosyltransferase EutT NP_461402.1 2576556 R 99287 CDS NP_461403.1 16765788 1253990 complement(2577356..2578045) 1 NC_003197.1 ethanolamine utilization protein EutQ (SW:EUTQ_SALTY); ethanolamine utilization protein EutQ 2578045 eutQ 1253990 eutQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ethanolamine utilization protein EutQ NP_461403.1 2577356 R 99287 CDS NP_461404.1 16765789 1253991 complement(2578023..2578502) 1 NC_003197.1 ethanolamine utilization protein EutP (SW:EUTP_SALTY); ethanolamine utilization protein EutP 2578502 eutP 1253991 eutP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ethanolamine utilization protein EutP NP_461404.1 2578023 R 99287 CDS NP_461405.1 16765790 1253992 complement(2578515..2578850) 1 NC_003197.1 ethanolamine utilization protein EutS (SW:EUTS_SALTY); carboxysome structural protein EutS 2578850 eutS 1253992 eutS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carboxysome structural protein EutS NP_461405.1 2578515 R 99287 CDS NP_461406.1 16765791 1253993 complement(2579331..2579789) 1 NC_003197.1 transposase for insertion sequence element IS200 (SW:T200_SALTY); insertion sequence element IS200 transposase 2579789 tnpA_3 1253993 tnpA_3 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 insertion sequence element IS200 transposase NP_461406.1 2579331 R 99287 CDS NP_461407.1 16765792 1253994 complement(2579979..2582258) 1 NC_003197.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 2582258 maeB 1253994 maeB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 malic enzyme NP_461407.1 2579979 R 99287 CDS NP_461408.1 16765793 1253995 2582530..2583480 1 NC_003197.1 Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase A 2583480 talA 1253995 talA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transaldolase A NP_461408.1 2582530 D 99287 CDS NP_461409.1 16765794 1253996 2583500..2585500 1 NC_003197.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 2585500 tktB 1253996 tktB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transketolase NP_461409.1 2583500 D 99287 CDS NP_461410.1 16765795 1253997 complement(2585563..2585793) 1 NC_003197.1 cytoplasmic protein 2585793 1253997 STM2475 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461410.1 2585563 R 99287 CDS NP_461411.1 16765796 1253998 complement(2585921..2586964) 1 NC_003197.1 periplasmic protein 2586964 ypfG 1253998 ypfG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_461411.1 2585921 R 99287 CDS NP_461412.1 16765797 1253999 complement(2587089..2587664) 1 NC_003197.1 GDP-mannose pyrophosphatase NudK 2587664 nudK 1253999 nudK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GDP-mannose pyrophosphatase NudK NP_461412.1 2587089 R 99287 CDS NP_461413.1 16765798 1254000 2587868..2589166 1 NC_003197.1 hypothetical protein 2589166 1254000 STM2478 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461413.1 2587868 D 99287 CDS NP_461414.1 16765799 1254001 complement(2589615..2591576) 1 NC_003197.1 unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); oxidoreductase Fe-S binding subunit 2591576 aegA 1254001 aegA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase Fe-S binding subunit NP_461414.1 2589615 R 99287 CDS NP_461415.1 16765800 1254002 2591762..2593462 1 NC_003197.1 sensory histidine kinase NarQ 2593462 narQ 1254002 narQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensory histidine kinase NarQ NP_461415.1 2591762 D 99287 CDS NP_461416.1 16765801 1254003 2593647..2596760 1 NC_003197.1 RND family aminoglycoside/multidrug efflux pump 2596760 acrD 1254003 acrD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RND family aminoglycoside/multidrug efflux pump NP_461416.1 2593647 D 99287 CDS NP_461417.1 16765802 1254004 2597334..2597690 1 NC_003197.1 glutaredoxin family protein 2597690 yffB 1254004 yffB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutaredoxin family protein NP_461417.1 2597334 D 99287 CDS NP_461418.1 16765803 1254005 2597694..2598821 1 NC_003197.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2598821 dapE 1254005 dapE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 succinyl-diaminopimelate desuccinylase NP_461418.1 2597694 D 99287 CDS NP_461419.1 16765804 1254006 2598849..2599049 1 NC_003197.1 hypothetical protein 2599049 1254006 STM2484 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461419.1 2598849 D 99287 CDS NP_461420.1 16765805 1254007 complement(2599076..2601094) 1 NC_003197.1 tRNA(Met) cytidine acetyltransferase TmcA 2601094 ypfI 1254007 ypfI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA(Met) cytidine acetyltransferase TmcA NP_461420.1 2599076 R 99287 CDS NP_461421.1 16765806 1254008 complement(2601110..2601973) 1 NC_003197.1 inner membrane protein 2601973 1254008 STM2486 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461421.1 2601110 R 99287 CDS NP_461422.1 16765807 1254009 complement(2602104..2602817) 1 NC_003197.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2602817 purC 1254009 purC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoribosylaminoimidazole-succinocarboxamide synthase NP_461422.1 2602104 R 99287 CDS NP_461423.1 16765808 1254010 complement(2602992..2604026) 1 NC_003197.1 outer membrane protein assembly factor BamC 2604026 nlpB 1254010 nlpB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein assembly factor BamC NP_461423.1 2602992 R 99287 CDS NP_461424.1 16765809 1254011 complement(2604043..2604921) 1 NC_003197.1 catalyzes the formation of 4-hydroxy-tetrahydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; 4-hydroxy-tetrahydrodipicolinate synthase 2604921 dapA 1254011 dapA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-hydroxy-tetrahydrodipicolinate synthase NP_461424.1 2604043 R 99287 CDS NP_461425.2 161353589 1254012 2605067..2605639 1 NC_003197.1 negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 2605639 gcvR 1254012 gcvR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycine cleavage system transcriptional repressor NP_461425.2 2605067 D 99287 CDS NP_461426.1 16765811 1254013 2605639..2606109 1 NC_003197.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2606109 bcp 1254013 bcp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thioredoxin-dependent thiol peroxidase NP_461426.1 2605639 D 99287 CDS NP_461427.1 16765812 1254014 complement(2606156..2606509) 1 NC_003197.1 glycerate kinase 2606509 1254014 STM2492 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerate kinase NP_461427.1 2606156 R 99287 CDS NP_461428.1 16765813 1254015 complement(2606696..2607763) 1 NC_003197.1 PerM family permease 2607763 perM 1254015 perM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PerM family permease NP_461428.1 2606696 R 99287 CDS NP_461429.1 16765814 1254016 2607971..2609434 1 NC_003197.1 inner membrane or exported protein; hypothetical protein 2609434 1254016 STM2494 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461429.1 2607971 D 99287 CDS NP_461430.1 16765815 1254017 2609474..2609833 1 NC_003197.1 arsenate reductase 2609833 yfgD 1254017 yfgD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arsenate reductase NP_461430.1 2609474 D 99287 CDS NP_461431.1 16765816 1254018 complement(2609860..2610585) 1 NC_003197.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DnaA regulatory inactivator Hda 2610585 yfgE 1254018 yfgE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DnaA regulatory inactivator Hda NP_461431.1 2609860 R 99287 CDS NP_461432.1 16765817 1254019 complement(2610656..2611945) 1 NC_003197.1 uracil transporter 2611945 uraA 1254019 uraA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 uracil transporter NP_461432.1 2610656 R 99287 CDS NP_461433.1 16765818 1254020 complement(2612033..2612659) 1 NC_003197.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2612659 upp 1254020 upp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 uracil phosphoribosyltransferase NP_461433.1 2612033 R 99287 CDS NP_461434.3 308065941 1254021 2613073..2614110 1 NC_003197.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylformylglycinamidine cyclo-ligase 2614110 purM 1254021 purM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoribosylformylglycinamidine cyclo-ligase NP_461434.3 2613073 D 99287 CDS NP_461435.1 16765820 1254022 2614110..2614748 1 NC_003197.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2614748 purN 1254022 purN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoribosylglycinamide formyltransferase NP_461435.1 2614110 D 99287 CDS NP_461436.1 16765821 1254023 2614937..2617003 1 NC_003197.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2617003 ppk 1254023 ppk Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 polyphosphate kinase NP_461436.1 2614937 D 99287 CDS NP_461437.1 16765822 1254024 2617008..2618549 1 NC_003197.1 exopolyphosphatase 2618549 ppx 1254024 ppx Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 exopolyphosphatase NP_461437.1 2617008 D 99287 CDS NP_461438.1 16765823 1254025 complement(2618585..2620798) 1 NC_003197.1 diguanylate cyclase 2620798 1254025 STM2503 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diguanylate cyclase NP_461438.1 2618585 R 99287 CDS NP_461440.1 16765825 1254027 complement(2621103..2621363) 1 NC_003197.1 inner membrane protein 2621363 1254027 STM2505 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461440.1 2621103 R 99287 CDS NP_461441.1 16765826 1254028 2621211..2621402 1 NC_003197.1 inner membrane protein 2621402 1254028 STM2506 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461441.1 2621211 D 99287 CDS NP_461443.1 16765828 1254030 2621943..2622272 1 NC_003197.1 cytoplasmic protein 2622272 1254030 STM2508 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461443.1 2621943 D 99287 CDS NP_461444.1 16765829 1254031 complement(2622292..2622648) 1 NC_003197.1 transposase 2622648 1254031 STM2509 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transposase NP_461444.1 2622292 R 99287 CDS NP_461445.1 16765830 1254032 complement(2622805..2624382) 1 NC_003197.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; converts ATP and xanthosine 5'-phosphate and L-glutamine and water to AMP and pyrophosphate diphosphate and GMP and L-glutamate; GMP synthase 2624382 guaA 1254032 guaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GMP synthase NP_461445.1 2622805 R 99287 CDS NP_461446.1 16765831 1254033 complement(2624452..2625918) 1 NC_003197.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 2625918 guaB 1254033 guaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inosine 5'-monophosphate dehydrogenase NP_461446.1 2624452 R 99287 CDS NP_461447.1 16765832 1254034 2626079..2627428 1 NC_003197.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2627428 xseA 1254034 xseA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 exodeoxyribonuclease VII large subunit NP_461447.1 2626079 D 99287 CDS NP_461448.1 16765833 1254035 complement(2627589..2633708) 1 NC_003197.1 AIDA autotransporter-like protein 2633708 shdA 1254035 shdA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AIDA autotransporter-like protein NP_461448.1 2627589 R 99287 CDS NP_461449.1 16765834 1254036 complement(2634402..2641709) 1 NC_003197.1 RatB; outer membrane protein 2641709 ratB 1254036 ratB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_461449.1 2634402 R 99287 CDS NP_461450.1 16765835 1254037 complement(2641875..2647472) 1 NC_003197.1 RatA; outer membrane protein 2647472 ratA 1254037 ratA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_461450.1 2641875 R 99287 CDS NP_461451.1 16765836 1254038 complement(2647592..2648551) 1 NC_003197.1 SinI; outer membrane protein 2648551 sinI 1254038 sinI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_461451.1 2647592 R 99287 CDS NP_461452.1 16765837 1254039 complement(2648609..2650801) 1 NC_003197.1 intimin-like protein SinH 2650801 sinH 1254039 sinH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 intimin-like protein SinH NP_461452.1 2648609 R 99287 CDS NP_461453.1 16765838 1254040 complement(2651147..2651368) 1 NC_003197.1 cytoplasmic protein 2651368 yfgJ 1254040 yfgJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461453.1 2651147 R 99287 CDS NP_461454.1 16765839 1254041 complement(2651457..2652929) 1 NC_003197.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2652929 engA 1254041 engA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GTP-binding protein EngA NP_461454.1 2651457 R 99287 CDS NP_461455.1 16765840 1254042 complement(2653048..2654226) 1 NC_003197.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; uter membrane protein assembly factor BamB 2654226 bamB 1254042 bamB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 uter membrane protein assembly factor BamB NP_461455.1 2653048 R 99287 CDS NP_461456.1 16765841 1254043 complement(2654237..2654857) 1 NC_003197.1 inner membrane protein 2654857 yfgM 1254043 yfgM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461456.1 2654237 R 99287 CDS NP_461457.1 16765842 1254044 complement(2654871..2656145) 1 NC_003197.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidine--tRNA ligase 2656145 hisS 1254044 hisS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 histidine--tRNA ligase NP_461457.1 2654871 R 99287 CDS NP_461458.1 16765843 1254045 complement(2656256..2657374) 1 NC_003197.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2657374 ispG 1254045 ispG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase NP_461458.1 2656256 R 99287 CDS NP_461459.1 16765844 1254046 complement(2657401..2658405) 1 NC_003197.1 cytoskeletal protein RodZ 2658405 yfgA 1254046 yfgA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoskeletal protein RodZ NP_461459.1 2657401 R 99287 CDS NP_461460.1 16765845 1254047 complement(2658697..2659863) 1 NC_003197.1 23S rRNA m2A2503 methyltransferase; tRNA m2A37 methyltransferase; methylates the C2 position of the A2530 and A37 nucleotides in 23S rRNA; may be involved in antibiotic resistance; dual-specificity RNA methyltransferase RlmN 2659863 yfgB 1254047 yfgB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dual-specificity RNA methyltransferase RlmN NP_461460.1 2658697 R 99287 CDS NP_461461.1 16765846 1254048 complement(2660070..2660501) 1 NC_003197.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2660501 ndk 1254048 ndk Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleoside diphosphate kinase NP_461461.1 2660070 R 99287 CDS NP_461462.1 16765847 1254049 complement(2660622..2661485) 1 NC_003197.1 hypothetical protein 2661485 1254049 STM2527 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461462.1 2660622 R 99287 CDS NP_461463.1 16765848 1254050 complement(2661485..2662294) 1 NC_003197.1 dimethylsulfoxide reductase subunit C 2662294 1254050 STM2528 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dimethylsulfoxide reductase subunit C NP_461463.1 2661485 R 99287 CDS NP_461464.1 16765849 1254051 complement(2662287..2662916) 1 NC_003197.1 dimethylsulfoxide reductase subunit B 2662916 1254051 STM2529 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dimethylsulfoxide reductase subunit B NP_461464.1 2662287 R 99287 CDS NP_461465.1 16765850 1254052 complement(2662913..2665318) 1 NC_003197.1 dimethylsulfoxide reductase subunit A 2665318 1254052 STM2530 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dimethylsulfoxide reductase subunit A NP_461465.1 2662913 R 99287 CDS NP_461466.1 16765851 1254053 complement(2665447..2667762) 1 NC_003197.1 penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1c transglycosylase 2667762 pbpC 1254053 pbpC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 penicillin-binding protein 1c transglycosylase NP_461466.1 2665447 R 99287 CDS NP_461467.1 16765852 1254054 complement(2667763..2672697) 1 NC_003197.1 inner membrane lipoprotein 2672697 1254054 STM2532 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane lipoprotein NP_461467.1 2667763 R 99287 CDS NP_461468.1 16765853 1254055 2672906..2673748 1 NC_003197.1 catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 2673748 sseA 1254055 sseA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-mercaptopyruvate sulfurtransferase NP_461468.1 2672906 D 99287 CDS NP_461469.1 16765854 1254056 2673995..2674663 1 NC_003197.1 cytoplasmic protein 2674663 1254056 STM2534 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461469.1 2673995 D 99287 CDS NP_461470.2 409994429 1254057 complement(2675232..2676008) 1 NC_003197.1 enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB 2676008 sseB 1254057 sseB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 enhanced serine sensitivity protein SseB NP_461470.2 2675232 R 99287 CDS NP_461471.1 16765856 1254058 complement(2676118..2677401) 1 NC_003197.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; peptidase B 2677401 pepB 1254058 pepB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidase B NP_461471.1 2676118 R 99287 CDS NP_461472.1 16765857 1254059 complement(2677648..2677848) 1 NC_003197.1 believed to be involved in assembly of Fe-S clusters; hypothetical protein 2677848 1254059 STM2537 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461472.1 2677648 R 99287 CDS NP_461473.1 16765858 1254060 complement(2677860..2678195) 1 NC_003197.1 electron carrer protein 2678195 fdx 1254060 fdx Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 electron carrer protein NP_461473.1 2677860 R 99287 CDS NP_461474.1 16765859 1254061 complement(2678197..2680047) 1 NC_003197.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2680047 hscA 1254061 hscA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone protein HscA NP_461474.1 2678197 R 99287 CDS NP_461475.1 16765860 1254062 complement(2680060..2680575) 1 NC_003197.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone protein HscB 2680575 hscB 1254062 hscB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 co-chaperone protein HscB NP_461475.1 2680060 R 99287 CDS NP_461476.1 16765861 1254063 complement(2680771..2681094) 1 NC_003197.1 iron-sulfur cluster assembly protein; forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-binding protein IscA 2681094 iscA 1254063 iscA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 iron-binding protein IscA NP_461476.1 2680771 R 99287 CDS NP_461477.1 16765862 1254064 complement(2681123..2681509) 1 NC_003197.1 iron-sulfur cluster assembly scaffold protein 2681509 1254064 STM2542 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 iron-sulfur cluster assembly scaffold protein NP_461477.1 2681123 R 99287 CDS NP_461478.1 16765863 1254065 complement(2681537..2682751) 1 NC_003197.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 2682751 nifS 1254065 nifS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cysteine desulfurase NP_461478.1 2681537 R 99287 CDS NP_461479.1 16765864 1254066 complement(2682931..2683425) 1 NC_003197.1 regulates the expression of the iscRSUA operon; HTH-type transcriptional regulator IscR 2683425 yfhP 1254066 yfhP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator IscR NP_461479.1 2682931 R 99287 CDS NP_461480.1 16765865 1254067 complement(2683585..2684316) 1 NC_003197.1 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ 2684316 1254067 STM2545 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ NP_461480.1 2683585 R 99287 CDS NP_461481.1 16765866 1254068 2684435..2685238 1 NC_003197.1 inositol monophosphatase 2685238 suhB 1254068 suhB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inositol monophosphatase NP_461481.1 2684435 D 99287 CDS NP_461482.1 16765867 1254069 2685383..2686261 1 NC_003197.1 hypothetical protein 2686261 1254069 STM2547 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461482.1 2685383 D 99287 CDS NP_461483.1 16765868 1254070 2686443..2687486 1 NC_003197.1 anaerobic sulfite reductase subunit A (anaerobic sulfite reductaseiron-sulfur subunit) (SW:ASRA_SALTY); anaerobic sulfite reductase subunit A 2687486 asrA 1254070 asrA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic sulfite reductase subunit A NP_461483.1 2686443 D 99287 CDS NP_461484.1 16765869 1254071 2687490..2688308 1 NC_003197.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 2688308 asrB 1254071 asrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic sulfite reductase subunit B NP_461484.1 2687490 D 99287 CDS NP_461485.1 16765870 1254072 2688319..2689332 1 NC_003197.1 anaerobic sulfite reductase subunit C (SW:ASRC_SALTY); anaerobic sulfite reductase subunit C 2689332 asrC 1254072 asrC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic sulfite reductase subunit C NP_461485.1 2688319 D 99287 CDS NP_461486.1 16765871 1254073 complement(2689333..2690319) 1 NC_003197.1 inner membrane protein 2690319 1254073 STM2551 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461486.1 2689333 R 99287 CDS NP_461487.1 16765872 1254074 complement(2690310..2690948) 1 NC_003197.1 periplasmic protein; hypothetical protein 2690948 1254074 STM2552 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461487.1 2690310 R 99287 CDS NP_461488.1 16765873 1254075 2691074..2692351 1 NC_003197.1 stationary phase inducible protein CsiE 2692351 csiE 1254075 csiE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 stationary phase inducible protein CsiE NP_461488.1 2691074 D 99287 CDS NP_461489.1 16765874 1254076 complement(2692346..2693485) 1 NC_003197.1 transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter 2693485 hcaT 1254076 hcaT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-phenylpropionic acid transporter NP_461489.1 2692346 R 99287 CDS NP_461490.1 16765875 1254077 complement(2693681..2694934) 1 NC_003197.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2694934 glyA 1254077 glyA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 serine hydroxymethyltransferase NP_461490.1 2693681 R 99287 CDS NP_461491.1 16765876 1254078 2695259..2696449 1 NC_003197.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2696449 hmpA 1254078 hmpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional nitric oxide dioxygenase/dihydropteridine reductase NP_461491.1 2695259 D 99287 CDS NP_461492.1 16765877 1254079 2696631..2698175 1 NC_003197.1 regulates the cadBA operon; DNA-binding transcriptional activator CadC 2698175 cadC 1254079 cadC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional activator CadC NP_461492.1 2696631 D 99287 CDS NP_461493.1 16765878 1254080 2698536..2699867 1 NC_003197.1 antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; APC family lysine/cadaverine transport protein 2699867 cadB 1254080 cadB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 APC family lysine/cadaverine transport protein NP_461493.1 2698536 D 99287 CDS NP_461494.1 16765879 1254081 2699950..2702094 1 NC_003197.1 lysine decarboxylase; inducible (SW:DCLY_SALTY); lysine decarboxylase 1 2702094 cadA 1254081 cadA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lysine decarboxylase 1 NP_461494.1 2699950 D 99287 CDS NP_461495.1 16765880 1254082 2702150..2703610 1 NC_003197.1 di-/tripeptide transport protein 2703610 yjdL 1254082 yjdL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 di-/tripeptide transport protein NP_461495.1 2702150 D 99287 CDS NP_461496.1 16765881 1254083 complement(2703659..2703997) 1 NC_003197.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; nitrogen regulatory protein P-II 1 2703997 glnB 1254083 glnB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrogen regulatory protein P-II 1 NP_461496.1 2703659 R 99287 CDS NP_461497.1 16765882 1254084 complement(2704074..2705411) 1 NC_003197.1 response regulator GlrR 2705411 glrR 1254084 glrR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 response regulator GlrR NP_461497.1 2704074 R 99287 CDS NP_461498.1 16765883 1254085 complement(2705408..2706172) 1 NC_003197.1 hypothetical protein 2706172 1254085 STM2563 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461498.1 2705408 R 99287 CDS NP_461499.1 16765884 1254086 complement(2706174..2707616) 1 NC_003197.1 sensor kinase GlrK 2707616 glrK 1254086 glrK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensor kinase GlrK NP_461499.1 2706174 R 99287 CDS NP_461500.1 16765885 1254087 complement(2708254..2712141) 1 NC_003197.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 2712141 purG 1254087 purG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoribosylformylglycinamidine synthase NP_461500.1 2708254 R 99287 CDS NP_461501.1 16765886 1254088 2712163..2712396 1 NC_003197.1 periplasmic protein 2712396 1254088 STM2566 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_461501.1 2712163 D 99287 CDS NP_461502.1 16765887 1254089 2712397..2713941 1 NC_003197.1 member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; lytic murein transglycosylase F 2713941 yfhD 1254089 yfhD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lytic murein transglycosylase F NP_461502.1 2712397 D 99287 CDS NP_461503.1 16765888 1254090 complement(2713992..2714543) 1 NC_003197.1 tRNA-specific adenosine deaminase 2714543 yfhC 1254090 yfhC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA-specific adenosine deaminase NP_461503.1 2713992 R 99287 CDS NP_461504.1 16765889 1254091 complement(2714568..2715203) 1 NC_003197.1 hypothetical protein 2715203 1254091 STM2569 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461504.1 2714568 R 99287 CDS NP_461505.1 16765890 1254092 complement(2715207..2716568) 1 NC_003197.1 PTS system transporter subunit IIB 2716568 1254092 STM2570 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system transporter subunit IIB NP_461505.1 2715207 R 99287 CDS NP_461506.1 16765891 1254093 complement(2716579..2717472) 1 NC_003197.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 2717472 murQ 1254093 murQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-acetylmuramic acid 6-phosphate etherase NP_461506.1 2716579 R 99287 CDS NP_461507.1 16765892 1254094 2717588..2718436 1 NC_003197.1 ABC superfamily membrane protein; DNA-binding transcriptional regulator 2718436 yfhH 1254094 yfhH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional regulator NP_461507.1 2717588 D 99287 CDS NP_461508.1 16765893 1254095 complement(2718475..2719392) 1 NC_003197.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 2719392 1254095 STM2573 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-dehydropantoate 2-reductase NP_461508.1 2718475 R 99287 CDS NP_461509.1 16765894 1254096 complement(2719414..2720610) 1 NC_003197.1 permease 2720610 1254096 STM2574 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_461509.1 2719414 R 99287 CDS NP_461510.1 16765895 1254097 2720726..2721652 1 NC_003197.1 LysR family transcriptional regulator 2721652 1254097 STM2575 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_461510.1 2720726 D 99287 CDS NP_461511.1 16765896 1254098 2721690..2721950 1 NC_003197.1 ferredoxin 2721950 yfhL 1254098 yfhL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferredoxin NP_461511.1 2721690 D 99287 CDS NP_461512.1 16765897 1254099 complement(2722062..2722442) 1 NC_003197.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; holo-ACP synthase 2722442 acpS 1254099 acpS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 holo-ACP synthase NP_461512.1 2722062 R 99287 CDS NP_461513.1 16765898 1254100 complement(2722442..2723173) 1 NC_003197.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 2723173 pdxJ 1254100 pdxJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyridoxine 5'-phosphate synthase NP_461513.1 2722442 R 99287 CDS NP_461514.1 16765899 1254101 complement(2723185..2723913) 1 NC_003197.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 2723913 recO 1254101 recO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA repair protein RecO NP_461514.1 2723185 R 99287 CDS NP_461515.1 16765900 1254102 complement(2723925..2724830) 1 NC_003197.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTPase Era 2724830 era 1254102 era Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GTPase Era NP_461515.1 2723925 R 99287 CDS NP_461516.1 16765901 1254103 complement(2724827..2725507) 1 NC_003197.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 2725507 rnc 1254103 rnc Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonuclease III NP_461516.1 2724827 R 99287 CDS NP_461517.1 16765902 1254104 complement(2725781..2726755) 1 NC_003197.1 catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I 2726755 lepB 1254104 lepB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 signal peptidase I NP_461517.1 2725781 R 99287 CDS NP_461518.1 16765903 1254105 complement(2726772..2728571) 1 NC_003197.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; elongation factor 4 2728571 lepA 1254105 lepA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 elongation factor 4 NP_461518.1 2726772 R 99287 CDS NP_461519.1 16765904 1254106 2728976..2730469 1 NC_003197.1 leucine-rich repeat protein; hypothetical protein 2730469 1254106 STM2584 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461519.1 2728976 D 99287 CDS NP_461520.1 16765905 1254107 2731356..2731901 1 NC_003197.1 hypothetical protein 2731901 1254107 STM2585 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461520.1 2731356 D 99287 CDS NP_461521.1 16765906 1254108 2733013..2733240 1 NC_003197.1 PagK-like protein 2733240 1254108 STM2585A Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PagK-like protein NP_461521.1 2733013 D 99287 CDS NP_461522.1 16765907 1254109 complement(2733337..2733915) 1 NC_003197.1 phage tail assembly protein; phage tail assembly-like protein 2733915 1254109 STM2586 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail assembly-like protein NP_461522.1 2733337 R 99287 CDS NP_461523.1 16765908 1254110 complement(2733905..2734729) 1 NC_003197.1 phage tail assembly protein; phage tail assembly-like protein 2734729 1254110 STM2587 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail assembly-like protein NP_461523.1 2733905 R 99287 CDS NP_461524.1 16765909 1254111 complement(2734726..2737098) 1 NC_003197.1 tail fiber-like protein 2737098 1254111 STM2588 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tail fiber-like protein NP_461524.1 2734726 R 99287 CDS NP_461525.1 16765910 1254112 complement(2737516..2740794) 1 NC_003197.1 host specificity protein J 2740794 1254112 STM2589 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 host specificity protein J NP_461525.1 2737516 R 99287 CDS NP_461526.1 16765911 1254113 complement(2740856..2741503) 1 NC_003197.1 tail assembly protein I 2741503 1254113 STM2590 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tail assembly protein I NP_461526.1 2740856 R 99287 CDS NP_461527.1 16765912 1254114 complement(2741401..2742000) 1 NC_003197.1 tail assembly protein K 2742000 1254114 STM2591 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tail assembly protein K NP_461527.1 2741401 R 99287 CDS NP_461528.1 16765913 1254115 complement(2742145..2742843) 1 NC_003197.1 phage tail component L-like protein 2742843 1254115 STM2592 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail component L-like protein NP_461528.1 2742145 R 99287 CDS NP_461529.1 16765914 1254116 complement(2742853..2743182) 1 NC_003197.1 phage tail component M-like protein 2743182 1254116 STM2593 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail component M-like protein NP_461529.1 2742853 R 99287 CDS NP_461530.1 16765915 1254117 complement(2743185..2746280) 1 NC_003197.1 phage tail component H-like protein 2746280 1254117 STM2594 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail component H-like protein NP_461530.1 2743185 R 99287 CDS NP_461531.1 16765916 1254118 complement(2746252..2746590) 1 NC_003197.1 minor tail-like protein 2746590 1254118 STM2595 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor tail-like protein NP_461531.1 2746252 R 99287 CDS NP_461532.1 16765917 1254119 complement(2746587..2746982) 1 NC_003197.1 minor tail-like protein 2746982 1254119 STM2596 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor tail-like protein NP_461532.1 2746587 R 99287 CDS NP_461533.1 16765918 1254120 complement(2747033..2747779) 1 NC_003197.1 major tail-like protein 2747779 1254120 STM2597 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 major tail-like protein NP_461533.1 2747033 R 99287 CDS NP_461534.1 16765919 1254121 complement(2747787..2748188) 1 NC_003197.1 hypothetical protein 2748188 1254121 STM2598 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461534.1 2747787 R 99287 CDS NP_461535.1 16765920 1254122 2748177..2749427 1 NC_003197.1 transposase 2749427 1254122 STM2599 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transposase NP_461535.1 2748177 D 99287 CDS NP_461536.1 16765921 1254123 complement(2749476..2750054) 1 NC_003197.1 minor tail protein Z-like 2750054 1254123 STM2600 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor tail protein Z-like NP_461536.1 2749476 R 99287 CDS NP_461537.1 16765922 1254124 complement(2750082..2750465) 1 NC_003197.1 minor capsid protein FII 2750465 1254124 STM2601 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minor capsid protein FII NP_461537.1 2750082 R 99287 CDS NP_461538.1 16765923 1254125 complement(2750476..2750835) 1 NC_003197.1 DNA packaging protein 2750835 1254125 STM2602 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA packaging protein NP_461538.1 2750476 R 99287 CDS NP_461539.1 16765924 1254126 complement(2750893..2751921) 1 NC_003197.1 phage head-like protein 2751921 1254126 STM2603 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage head-like protein NP_461539.1 2750893 R 99287 CDS NP_461540.1 16765925 1254127 complement(2751976..2752323) 1 NC_003197.1 phage head-like protein 2752323 1254127 STM2604 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage head-like protein NP_461540.1 2751976 R 99287 CDS NP_461541.1 16765926 1254128 complement(2752336..2753832) 1 NC_003197.1 head-tail preconnector-like protein 2753832 1254128 STM2605 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 head-tail preconnector-like protein NP_461541.1 2752336 R 99287 CDS NP_461542.1 16765927 1254129 complement(2753822..2755402) 1 NC_003197.1 head-tail preconnector-like protein 2755402 1254129 STM2606 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 head-tail preconnector-like protein NP_461542.1 2753822 R 99287 CDS NP_461543.1 16765928 1254130 complement(2755399..2755602) 1 NC_003197.1 head-to-tail joining-like protein 2755602 1254130 STM2607 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 head-to-tail joining-like protein NP_461543.1 2755399 R 99287 CDS NP_461544.1 16765929 1254131 complement(2755586..2757517) 1 NC_003197.1 terminase-like large protein 2757517 1254131 STM2608 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 terminase-like large protein NP_461544.1 2755586 R 99287 CDS NP_461545.1 16765930 1254132 complement(2757539..2758033) 1 NC_003197.1 DNA packaging-like protein 2758033 1254132 STM2609 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA packaging-like protein NP_461545.1 2757539 R 99287 CDS NP_461546.1 16765931 1254133 2758320..2758721 1 NC_003197.1 periplasmic lysozyme inhibitor 2758721 1254133 STM2610 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic lysozyme inhibitor NP_461546.1 2758320 D 99287 CDS NP_461547.2 39546345 1254134 complement(2758957..2759430) 1 NC_003197.1 endopeptidase-like protein 2759430 1254134 STM2611.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 endopeptidase-like protein NP_461547.2 2758957 R 99287 CDS NP_461548.1 16765933 1254135 complement(2759427..2759879) 1 NC_003197.1 lysozyme 2759879 1254135 STM2612 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lysozyme NP_461548.1 2759427 R 99287 CDS NP_461549.1 16765934 1254136 complement(2759863..2760192) 1 NC_003197.1 phage holin family protein 2760192 1254136 STM2613 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage holin family protein NP_461549.1 2759863 R 99287 CDS NP_461550.1 16765935 1254137 2760468..2761154 1 NC_003197.1 hypothetical protein 2761154 1254137 STM2614 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461550.1 2760468 D 99287 CDS YP_006892401.1 409994430 13865714 complement(2761369..2761557) 1 NC_003197.1 hypothetical protein 2761557 13865714 STM05520 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892401.1 2761369 R 99287 CDS NP_461551.1 16765936 1254139 complement(2762064..2762627) 1 NC_003197.1 antirepressor-like protein 2762627 1254139 STM2616 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 antirepressor-like protein NP_461551.1 2762064 R 99287 CDS NP_461552.1 16765937 1254140 complement(2762900..2763577) 1 NC_003197.1 antiterminator-like protein 2763577 1254140 STM2617 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 antiterminator-like protein NP_461552.1 2762900 R 99287 CDS NP_461553.1 16765938 1254141 complement(2763574..2763714) 1 NC_003197.1 hypothetical protein 2763714 1254141 STM2618 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461553.1 2763574 R 99287 CDS NP_461554.1 16765939 1254142 complement(2763711..2764322) 1 NC_003197.1 hypothetical protein 2764322 1254142 STM2619 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461554.1 2763711 R 99287 CDS NP_461555.1 16765940 1254143 complement(2764531..2765133) 1 NC_003197.1 hypothetical protein 2765133 1254143 STM2620 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461555.1 2764531 R 99287 CDS YP_006892402.1 409994431 13865728 complement(2765216..2765437) 1 NC_003197.1 hypothetical protein 2765437 13865728 STM05530 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892402.1 2765216 R 99287 CDS NP_461556.1 16765941 1254144 complement(2765549..2765782) 1 NC_003197.1 hypothetical protein 2765782 1254144 STM2621 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461556.1 2765549 R 99287 CDS NP_461557.1 16765942 1254145 complement(2766074..2766367) 1 NC_003197.1 hypothetical protein 2766367 1254145 STM2622 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461557.1 2766074 R 99287 CDS NP_461558.1 16765943 1254146 complement(2766442..2766753) 1 NC_003197.1 hypothetical protein 2766753 1254146 STM2623 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461558.1 2766442 R 99287 CDS NP_461559.1 16765944 1254147 complement(2766750..2767097) 1 NC_003197.1 hypothetical protein 2767097 1254147 STM2624 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461559.1 2766750 R 99287 CDS NP_461560.1 16765945 1254148 complement(2767108..2767857) 1 NC_003197.1 acts to load the DnaB helicase onto the intiation site durning DNA replication; replication protein 2767857 1254148 STM2625 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 replication protein NP_461560.1 2767108 R 99287 CDS NP_461561.1 16765946 1254149 complement(2767860..2768843) 1 NC_003197.1 replication protein 15-like protein 2768843 1254149 STM2626 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 replication protein 15-like protein NP_461561.1 2767860 R 99287 CDS NP_461562.1 16765947 1254150 complement(2768928..2769302) 1 NC_003197.1 cI-like protein 2769302 1254150 STM2627 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cI-like protein NP_461562.1 2768928 R 99287 CDS NP_461563.1 16765948 1254151 2769627..2770037 1 NC_003197.1 probable regulatory protein; regulatory protein 2770037 1254151 STM2628 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_461563.1 2769627 D 99287 CDS NP_461564.1 16765949 1254152 2770087..2770347 1 NC_003197.1 hypothetical protein 2770347 1254152 STM2629 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461564.1 2770087 D 99287 CDS NP_461565.1 16765950 1254153 2770340..2770498 1 NC_003197.1 hypothetical protein 2770498 1254153 STM2630 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461565.1 2770340 D 99287 CDS NP_461566.1 16765951 1254154 2770520..2770870 1 NC_003197.1 hypothetical protein 2770870 1254154 STM2631 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461566.1 2770520 D 99287 CDS NP_461567.1 16765952 1254155 2770997..2773882 1 NC_003197.1 exodeoxyribonuclease VIII-like protein 2773882 1254155 STM2632 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 exodeoxyribonuclease VIII-like protein NP_461567.1 2770997 D 99287 CDS NP_461568.2 39546346 1254156 2773893..2775002 1 NC_003197.1 enterohemolysin 1-like protein 2775002 1254156 STM2633.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 enterohemolysin 1-like protein NP_461568.2 2773893 D 99287 CDS NP_461569.1 16765954 1254157 2775045..2775284 1 NC_003197.1 hypothetical protein 2775284 1254157 STM2634 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461569.1 2775045 D 99287 CDS NP_461570.1 16765955 1254158 2775325..2775609 1 NC_003197.1 excisionase-like protein 2775609 1254158 STM2635 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 excisionase-like protein NP_461570.1 2775325 D 99287 CDS NP_461571.1 16765956 1254159 complement(2775587..2776816) 1 NC_003197.1 integrase-like protein 2776816 1254159 STM2636 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integrase-like protein NP_461571.1 2775587 R 99287 CDS NP_461572.1 16765957 1254160 complement(2777314..2777793) 1 NC_003197.1 involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC 2777793 rseC 1254160 rseC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SoxR reducing system protein RseC NP_461572.1 2777314 R 99287 CDS NP_461573.1 16765958 1254161 complement(2777790..2778746) 1 NC_003197.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; anti-sigma E factor RseB 2778746 rseB 1254161 rseB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anti-sigma E factor RseB NP_461573.1 2777790 R 99287 CDS NP_461574.1 16765959 1254162 complement(2778746..2779396) 1 NC_003197.1 anti-sigma E factor RseA 2779396 rseA 1254162 rseA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anti-sigma E factor RseA NP_461574.1 2778746 R 99287 CDS NP_461575.1 16765960 1254163 complement(2779428..2780003) 1 NC_003197.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; ECF RNA polymerase sigma factor RpoE 2780003 rpoE 1254163 rpoE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ECF RNA polymerase sigma factor RpoE NP_461575.1 2779428 R 99287 CDS NP_461576.1 16765961 1254164 2780428..2782050 1 NC_003197.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2782050 nadB 1254164 nadB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-aspartate oxidase NP_461576.1 2780428 D 99287 CDS NP_461577.1 16765962 1254165 complement(2782035..2782772) 1 NC_003197.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase 2782772 yfiC 1254165 yfiC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA1(Val) (adenine(37)-N6)-methyltransferase NP_461577.1 2782035 R 99287 CDS NP_461578.1 16765963 1254166 2782903..2784237 1 NC_003197.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 2784237 srmB 1254166 srmB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent RNA helicase SrmB NP_461578.1 2782903 D 99287 CDS NP_461579.1 16765964 1254167 complement(2784255..2785154) 1 NC_003197.1 LysR family transcriptional regulator 2785154 yfiE 1254167 yfiE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_461579.1 2784255 R 99287 CDS NP_461580.1 16765965 1254168 2785257..2785844 1 NC_003197.1 cysteine/O-acetylserine efflux protein 2785844 yfiK 1254168 yfiK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cysteine/O-acetylserine efflux protein NP_461580.1 2785257 D 99287 CDS NP_461581.1 16765966 1254169 complement(2785906..2786289) 1 NC_003197.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor 2786289 yfiD 1254169 yfiD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 autonomous glycyl radical cofactor NP_461581.1 2785906 R 99287 CDS NP_461582.1 16765967 1254170 2786608..2787297 1 NC_003197.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2787297 ung 1254170 ung Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 uracil-DNA glycosylase NP_461582.1 2786608 D 99287 CDS NP_461583.1 16765968 1254171 complement(2787413..2788450) 1 NC_003197.1 tRNA/rRNA methyltransferase 2788450 yfiF 1254171 yfiF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA/rRNA methyltransferase NP_461583.1 2787413 R 99287 CDS NP_461584.1 16765969 1254172 2788654..2789073 1 NC_003197.1 thioredoxin 2 2789073 trxC 1254172 trxC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thioredoxin 2 NP_461584.1 2788654 D 99287 CDS NP_461585.1 16765970 1254173 2789146..2789826 1 NC_003197.1 cytoplasmic protein 2789826 yfiP 1254173 yfiP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461585.1 2789146 D 99287 CDS NP_461586.1 16765971 1254174 2789880..2792540 1 NC_003197.1 protein lysine acetyltransferase 2792540 1254174 STM2651 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protein lysine acetyltransferase NP_461586.1 2789880 D 99287 CDS NP_461587.1 16765972 1254175 2792655..2794010 1 NC_003197.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2794010 pssA 1254175 pssA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphatidylserine synthase NP_461587.1 2792655 D 99287 CDS NP_461588.1 16765973 1254176 2794055..2794378 1 NC_003197.1 outer membrane lipoprotein 2794378 yfiM 1254176 yfiM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_461588.1 2794055 D 99287 CDS NP_461589.1 16765974 1254177 complement(2794375..2795676) 1 NC_003197.1 alpha-ketoglutarate transporter 2795676 kgtP 1254177 kgtP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alpha-ketoglutarate transporter NP_461589.1 2794375 R 99287 CDS NP_461590.1 16765975 1254178 complement(2795780..2796235) 1 NC_003197.1 cytoplasmic protein 2796235 1254178 STM2655 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461590.1 2795780 R 99287 CDS NP_461591.1 16765976 1254183 complement(2802116..2804689) 1 NC_003197.1 chaperone protein ClpB 2804689 clpB 1254183 clpB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone protein ClpB NP_461591.1 2802116 R 99287 CDS NP_461592.1 16765977 1254184 complement(2804819..2805550) 1 NC_003197.1 inner membrane protein 2805550 yfiH 1254184 yfiH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461592.1 2804819 R 99287 CDS NP_461593.1 16765978 1254185 complement(2805547..2806527) 1 NC_003197.1 responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; rRNA large subunit pseudouridine synthase D 2806527 rluD 1254185 rluD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA large subunit pseudouridine synthase D NP_461593.1 2805547 R 99287 CDS NP_461594.1 16765979 1254186 2806659..2807396 1 NC_003197.1 with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly factor BamD 2807396 yfiO 1254186 yfiO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein assembly factor BamD NP_461594.1 2806659 D 99287 CDS NP_461595.1 16765980 1254188 2807668..2808006 1 NC_003197.1 associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 2808006 yfiA 1254188 yfiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 translation inhibitor protein RaiA NP_461595.1 2807668 D 99287 CDS NP_461597.1 16765982 1254190 2808257..2809417 1 NC_003197.1 catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 2809417 pheA 1254190 pheA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional chorismate mutase/prephenate dehydratase NP_461597.1 2808257 D 99287 CDS NP_461598.1 16765983 1254191 complement(2809378..2810286) 1 NC_003197.1 cytoplasmic protein 2810286 1254191 STM2668 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461598.1 2809378 R 99287 CDS NP_461599.1 16765984 1254192 complement(2810344..2811465) 1 NC_003197.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 2811465 tyrA 1254192 tyrA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional chorismate mutase/prephenate dehydrogenase NP_461599.1 2810344 R 99287 CDS NP_461600.1 16765985 1254193 complement(2811475..2812545) 1 NC_003197.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 2812545 aroF 1254193 aroF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phospho-2-dehydro-3-deoxyheptonate aldolase NP_461600.1 2811475 R 99287 CDS NP_461601.1 16765986 1254194 2812985..2813503 1 NC_003197.1 periplasmic protein 2813503 yfiR 1254194 yfiR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_461601.1 2812985 D 99287 CDS NP_461602.1 16765987 1254195 2813496..2814716 1 NC_003197.1 diguanylate cyclase/phosphodiesterase 2814716 yfiN 1254195 yfiN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diguanylate cyclase/phosphodiesterase NP_461602.1 2813496 D 99287 CDS NP_461603.1 16765988 1254196 complement(2814873..2815220) 1 NC_003197.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2815220 rplS 1254196 rplS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L19 NP_461603.1 2814873 R 99287 CDS NP_461604.1 16765989 1254197 complement(2815261..2816028) 1 NC_003197.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 2816028 trmD 1254197 trmD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA (guanine-N(1)-)-methyltransferase NP_461604.1 2815261 R 99287 CDS NP_461605.1 16765990 1254198 complement(2816073..2816621) 1 NC_003197.1 Essential for efficient processing of 16S rRNA; ribosome maturation factor RimM 2816621 rimM 1254198 rimM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribosome maturation factor RimM NP_461605.1 2816073 R 99287 CDS NP_461606.1 16765991 1254199 complement(2816640..2816888) 1 NC_003197.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2816888 rpsP 1254199 rpsP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S16 NP_461606.1 2816640 R 99287 CDS NP_461607.1 16765992 1254200 complement(2817202..2818563) 1 NC_003197.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 2818563 ffh 1254200 ffh Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 signal recognition particle protein NP_461607.1 2817202 R 99287 CDS NP_461608.1 16765993 1254201 2818729..2819520 1 NC_003197.1 hypothetical protein 2819520 1254201 STM2678 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461608.1 2818729 D 99287 CDS NP_461609.2 161353588 1254202 2819630..2820826 1 NC_003197.1 membrane protein 2820826 yfjD 1254202 yfjD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane protein NP_461609.2 2819630 D 99287 CDS NP_461610.1 16765995 1254203 2820947..2821552 1 NC_003197.1 cytoplasmic protein 2821552 1254203 STM2680 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461610.1 2820947 D 99287 CDS NP_461611.1 16765996 1254204 complement(2821587..2822177) 1 NC_003197.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 2822177 grpE 1254204 grpE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 heat shock protein GrpE NP_461611.1 2821587 R 99287 CDS NP_461613.1 16765998 1254206 2822300..2823178 1 NC_003197.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2823178 ppnK 1254206 ppnK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inorganic polyphosphate/ATP-NAD kinase NP_461613.1 2822300 D 99287 CDS NP_461614.1 16765999 1254207 2823264..2824925 1 NC_003197.1 DNA repair protein RecN 2824925 recN 1254207 recN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA repair protein RecN NP_461614.1 2823264 D 99287 CDS NP_461615.1 16766000 1254208 2825074..2825412 1 NC_003197.1 outer membrane protein assembly factor BamE 2825412 bamE 1254208 bamE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein assembly factor BamE NP_461615.1 2825074 D 99287 CDS NP_461616.1 16766001 1254209 complement(2825578..2825868) 1 NC_003197.1 hypothetical protein 2825868 1254209 STM2686 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461616.1 2825578 R 99287 CDS NP_461617.1 16766002 1254210 complement(2825858..2826334) 1 NC_003197.1 lipid transport protein; oligoketide cyclase/lipid transport protein 2826334 yfjG 1254210 yfjG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oligoketide cyclase/lipid transport protein NP_461617.1 2825858 R 99287 CDS NP_461618.1 16766003 1254211 2826484..2826966 1 NC_003197.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2826966 smpB 1254211 smpB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SsrA-binding protein NP_461618.1 2826484 D 99287 CDS NP_461619.1 16766004 1254213 2839118..2840527 1 NC_003197.1 outer membrane efflux protein 2840527 1254213 STM2690 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane efflux protein NP_461619.1 2839118 D 99287 CDS NP_461620.1 16766005 1254214 2840524..2842704 1 NC_003197.1 hypothetical protein 2842704 1254214 STM2691 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461620.1 2840524 D 99287 CDS NP_461621.1 16766006 1254215 2842712..2843875 1 NC_003197.1 HlyD family secretion protein 2843875 1254215 STM2692 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HlyD family secretion protein NP_461621.1 2842712 D 99287 CDS NP_461622.1 16766007 1254217 complement(2844427..2844645) 1 NC_003197.1 late control-like protein 2844645 1254217 STM2694 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 late control-like protein NP_461622.1 2844427 R 99287 CDS NP_461623.1 16766008 1254218 complement(2844714..2845814) 1 NC_003197.1 late control-like protein 2845814 1254218 STM2695 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 late control-like protein NP_461623.1 2844714 R 99287 CDS NP_461624.1 16766009 1254219 complement(2845811..2846296) 1 NC_003197.1 phage tail protein 2846296 1254219 STM2696 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail protein NP_461624.1 2845811 R 99287 CDS NP_461625.1 16766010 1254220 complement(2846293..2849100) 1 NC_003197.1 phage tail-like protein 2849100 1254220 STM2697 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail-like protein NP_461625.1 2846293 R 99287 CDS NP_461626.1 16766011 1254221 complement(2849093..2849212) 1 NC_003197.1 gpE-like protein 2849212 1254221 STM2698 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 gpE-like protein NP_461626.1 2849093 R 99287 CDS NP_461627.1 16766012 1254222 complement(2849227..2849529) 1 NC_003197.1 phage tail-like protein 2849529 1254222 STM2699 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail-like protein NP_461627.1 2849227 R 99287 CDS NP_461628.1 16766013 1254223 complement(2849584..2850099) 1 NC_003197.1 phage tail fiber-like protein 2850099 1254223 STM2700 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail fiber-like protein NP_461628.1 2849584 R 99287 CDS NP_461629.1 16766014 1254224 complement(2850109..2851281) 1 NC_003197.1 phage tail sheath-like protein 2851281 1254224 STM2701 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail sheath-like protein NP_461629.1 2850109 R 99287 CDS NP_461630.1 16766015 1254225 complement(2851384..2851941) 1 NC_003197.1 DNA invertase-like protein 2851941 1254225 STM2702 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA invertase-like protein NP_461630.1 2851384 R 99287 CDS NP_461631.1 16766016 1254226 2851911..2852990 1 NC_003197.1 hypothetical protein 2852990 1254226 STM2703 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461631.1 2851911 D 99287 CDS NP_461632.1 16766017 1254227 2852997..2853404 1 NC_003197.1 tail fiber assembly-like protein 2853404 1254227 STM2704 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tail fiber assembly-like protein NP_461632.1 2852997 D 99287 CDS NP_461633.1 16766018 1254228 complement(2853408..2854025) 1 NC_003197.1 hypothetical protein 2854025 1254228 STM2705 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461633.1 2853408 R 99287 CDS NP_461634.1 16766019 1254229 complement(2853995..2855569) 1 NC_003197.1 phage tail-like protein 2855569 1254229 STM2706 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail-like protein NP_461634.1 2853995 R 99287 CDS NP_461635.1 16766020 1254230 complement(2855566..2856171) 1 NC_003197.1 phage tail-like protein 2856171 1254230 STM2707 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail-like protein NP_461635.1 2855566 R 99287 CDS NP_461636.1 16766021 1254231 complement(2856164..2857072) 1 NC_003197.1 phage tail-like protein 2857072 1254231 STM2708 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail-like protein NP_461636.1 2856164 R 99287 CDS NP_461637.1 16766022 1254232 complement(2857059..2857418) 1 NC_003197.1 base plate tail-like protein 2857418 1254232 STM2709 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 base plate tail-like protein NP_461637.1 2857059 R 99287 CDS NP_461638.1 16766023 1254233 complement(2857415..2857993) 1 NC_003197.1 phage baseplate assembly-like protein 2857993 1254233 STM2710 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage baseplate assembly-like protein NP_461638.1 2857415 R 99287 CDS NP_461639.1 16766024 1254234 complement(2858062..2858508) 1 NC_003197.1 phage tail-like protein 2858508 1254234 STM2711 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail-like protein NP_461639.1 2858062 R 99287 CDS NP_461640.1 16766025 1254235 complement(2858501..2858932) 1 NC_003197.1 phage tail-like protein 2858932 1254235 STM2712 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail-like protein NP_461640.1 2858501 R 99287 CDS NP_461641.1 16766026 1254236 complement(2858895..2859179) 1 NC_003197.1 hypothetical protein 2859179 1254236 STM2713 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461641.1 2858895 R 99287 CDS NP_461642.1 16766027 1254237 complement(2859028..2859456) 1 NC_003197.1 lysis-like protein 2859456 1254237 STM2714 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lysis-like protein NP_461642.1 2859028 R 99287 CDS NP_461643.2 39546347 1254238 complement(2859833..2860309) 1 NC_003197.1 prophage lysozyme 2860309 1254238 STM2715.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 prophage lysozyme NP_461643.2 2859833 R 99287 CDS NP_461644.1 16766029 1254239 complement(2860323..2860538) 1 NC_003197.1 phage-holin-like protein 2860538 1254239 STM2716 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage-holin-like protein NP_461644.1 2860323 R 99287 CDS NP_461645.1 16766030 1254240 complement(2860542..2860745) 1 NC_003197.1 phage tail-like protein 2860745 1254240 STM2717 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail-like protein NP_461645.1 2860542 R 99287 CDS NP_461646.1 16766031 1254241 complement(2860745..2861209) 1 NC_003197.1 head completion-like protein 2861209 1254241 STM2718 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 head completion-like protein NP_461646.1 2860745 R 99287 CDS NP_461647.1 16766032 1254242 complement(2861303..2861956) 1 NC_003197.1 terminase-like protein 2861956 1254242 STM2719 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 terminase-like protein NP_461647.1 2861303 R 99287 CDS NP_461648.1 16766033 1254243 complement(2861960..2863042) 1 NC_003197.1 major capsid-like protein 2863042 1254243 STM2720 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 major capsid-like protein NP_461648.1 2861960 R 99287 CDS NP_461649.1 16766034 1254244 complement(2863059..2863892) 1 NC_003197.1 capsid scaffold-like protein 2863892 1254244 STM2721 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 capsid scaffold-like protein NP_461649.1 2863059 R 99287 CDS NP_461650.1 16766035 1254245 2864035..2865801 1 NC_003197.1 terminase-like protein 2865801 1254245 STM2722 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 terminase-like protein NP_461650.1 2864035 D 99287 CDS NP_461651.1 16766036 1254246 2865801..2866841 1 NC_003197.1 portal vertex-like protein 2866841 1254246 STM2723 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 portal vertex-like protein NP_461651.1 2865801 D 99287 CDS NP_461652.2 409994432 1254247 complement(2866927..2868624) 1 NC_003197.1 hypothetical protein 2868624 1254247 STM2724 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461652.2 2866927 R 99287 CDS NP_461653.1 16766038 1254249 complement(2868892..2869623) 1 NC_003197.1 hypothetical protein 2869623 1254249 STM2726 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461653.1 2868892 R 99287 CDS NP_461654.1 16766039 1254250 complement(2869683..2869988) 1 NC_003197.1 hypothetical protein 2869988 1254250 STM2727 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461654.1 2869683 R 99287 CDS NP_461655.1 16766040 1254251 complement(2869927..2870115) 1 NC_003197.1 hypothetical protein 2870115 1254251 STM2728 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461655.1 2869927 R 99287 CDS NP_461656.1 16766041 1254252 complement(2870268..2872697) 1 NC_003197.1 from prophage-like region; replication endonuclease 2872697 1254252 STM2729 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 replication endonuclease NP_461656.1 2870268 R 99287 CDS NP_461657.1 16766042 1254253 complement(2872688..2873545) 1 NC_003197.1 DNA adenine methylase 2873545 1254253 STM2730 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA adenine methylase NP_461657.1 2872688 R 99287 CDS NP_461658.1 16766043 1254254 complement(2873542..2873769) 1 NC_003197.1 hypothetical protein 2873769 1254254 STM2731 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461658.1 2873542 R 99287 CDS NP_461659.1 16766044 1254255 complement(2873769..2874002) 1 NC_003197.1 hypothetical protein 2874002 1254255 STM2732 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461659.1 2873769 R 99287 CDS NP_461660.1 16766045 1254256 complement(2874070..2874411) 1 NC_003197.1 hypothetical protein 2874411 1254256 STM2733 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461660.1 2874070 R 99287 CDS NP_461661.1 16766046 1254257 2874631..2875089 1 NC_003197.1 hypothetical protein 2875089 1254257 STM2734 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461661.1 2874631 D 99287 CDS NP_461662.1 16766047 1254258 complement(2875037..2875270) 1 NC_003197.1 hypothetical protein 2875270 1254258 STM2735 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461662.1 2875037 R 99287 CDS NP_461663.1 16766048 1254259 complement(2875278..2875787) 1 NC_003197.1 hypothetical protein 2875787 1254259 STM2736 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461663.1 2875278 R 99287 CDS NP_461664.1 16766049 1254260 complement(2875823..2876062) 1 NC_003197.1 hypothetical protein 2876062 1254260 STM2737 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461664.1 2875823 R 99287 CDS NP_461665.1 16766050 1254261 2876179..2876811 1 NC_003197.1 hypothetical protein 2876811 1254261 STM2738 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461665.1 2876179 D 99287 CDS NP_461666.1 16766051 1254262 2876815..2877840 1 NC_003197.1 phage tail-like protein 2877840 1254262 STM2739 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail-like protein NP_461666.1 2876815 D 99287 CDS NP_461667.1 16766052 1254263 2878169..2879233 1 NC_003197.1 integrase-like protein 2879233 1254263 STM2740 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integrase-like protein NP_461667.1 2878169 D 99287 CDS NP_945167.1 39546348 2673740 2879247..2879414 1 NC_003197.1 hypothetical protein 2879414 2673740 STM2740.1N Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945167.1 2879247 D 99287 CDS NP_461668.1 16766053 1254264 2879461..2880054 1 NC_003197.1 periplasmic protein 2880054 1254264 STM2741 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_461668.1 2879461 D 99287 CDS NP_461669.1 16766054 1254265 2880444..2881637 1 NC_003197.1 cytoplasmic protein 2881637 1254265 STM2742 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461669.1 2880444 D 99287 CDS NP_461670.1 16766055 1254266 complement(2881972..2882799) 1 NC_003197.1 cytoplasmic protein 2882799 1254266 STM2743 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461670.1 2881972 R 99287 CDS NP_461671.1 16766056 1254267 2883250..2883465 1 NC_003197.1 cytoplasmic protein 2883465 1254267 STM2744 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461671.1 2883250 D 99287 CDS NP_461672.1 16766057 1254268 2883501..2885570 1 NC_003197.1 inner membrane protein 2885570 1254268 STM2745 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461672.1 2883501 D 99287 CDS NP_461673.1 16766058 1254269 2886073..2887356 1 NC_003197.1 excinuclease; ATPase 2887356 1254269 STM2746 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATPase NP_461673.1 2886073 D 99287 CDS NP_461674.1 16766059 1254270 2887401..2888219 1 NC_003197.1 cytoplasmic protein 2888219 1254270 STM2747 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461674.1 2887401 D 99287 CDS NP_461675.1 16766060 1254271 complement(2888373..2888729) 1 NC_003197.1 transcriptional regulator 2888729 1254271 STM2748 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_461675.1 2888373 R 99287 CDS NP_461676.1 16766061 1254272 2888824..2889108 1 NC_003197.1 cytoplasmic protein 2889108 1254272 STM2749 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461676.1 2888824 D 99287 CDS NP_461677.1 16766062 1254273 2889221..2889742 1 NC_003197.1 PTS system glucitol/sorbitol-specific transporter subunit IIC 2889742 1254273 STM2750 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system glucitol/sorbitol-specific transporter subunit IIC NP_461677.1 2889221 D 99287 CDS NP_461678.1 16766063 1254274 2889739..2890113 1 NC_003197.1 PTS system glucitol/sorbitol-specific transporter subunit IIA 2890113 1254274 STM2751 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system glucitol/sorbitol-specific transporter subunit IIA NP_461678.1 2889739 D 99287 CDS NP_461679.1 16766064 1254275 2890110..2891090 1 NC_003197.1 PTS system glucitol/sorbitol-specific transporter subunit IIB 2891090 1254275 STM2752 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system glucitol/sorbitol-specific transporter subunit IIB NP_461679.1 2890110 D 99287 CDS NP_461680.1 16766065 1254276 2891101..2892114 1 NC_003197.1 dehydrogenase 2892114 1254276 STM2753 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dehydrogenase NP_461680.1 2891101 D 99287 CDS NP_461681.1 16766066 1254277 2892409..2893611 1 NC_003197.1 hypothetical protein 2893611 1254277 STM2754 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461681.1 2892409 D 99287 CDS NP_461682.1 16766067 1254278 complement(2893685..2894320) 1 NC_003197.1 hexulose 6 phosphate synthase 2894320 1254278 STM2755 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hexulose 6 phosphate synthase NP_461682.1 2893685 R 99287 CDS NP_461683.1 16766068 1254279 complement(2894344..2894907) 1 NC_003197.1 sugar phosphate aminotransferase 2894907 1254279 STM2756 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar phosphate aminotransferase NP_461683.1 2894344 R 99287 CDS NP_461684.1 16766069 1254280 complement(2894907..2895749) 1 NC_003197.1 cytoplasmic protein 2895749 1254280 STM2757 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461684.1 2894907 R 99287 CDS NP_461685.1 16766070 1254281 complement(2895879..2897420) 1 NC_003197.1 PTS system transporter subunit IIBC 2897420 1254281 STM2758 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system transporter subunit IIBC NP_461685.1 2895879 R 99287 CDS NP_461686.1 16766071 1254282 2897643..2899322 1 NC_003197.1 dipeptide/oligopeptide/nickel ABC-type ABC transporter substrate-binding protein 2899322 1254282 STM2759 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dipeptide/oligopeptide/nickel ABC-type ABC transporter substrate-binding protein NP_461686.1 2897643 D 99287 CDS NP_461687.1 16766072 1254283 2900439..2901314 1 NC_003197.1 integrase 2901314 1254283 STM2760 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integrase NP_461687.1 2900439 D 99287 CDS NP_461688.1 16766073 1254284 2901480..2903354 1 NC_003197.1 inner membrane protein 2903354 1254284 STM2761 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461688.1 2901480 D 99287 CDS NP_461689.1 16766074 1254285 complement(2903614..2904897) 1 NC_003197.1 inner membrane protein 2904897 1254285 STM2762 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461689.1 2903614 R 99287 CDS NP_461692.1 16766077 1254288 complement(2907066..2907332) 1 NC_003197.1 transposase 2907332 1254288 STM2765 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transposase NP_461692.1 2907066 R 99287 CDS NP_461693.1 16766078 1254289 complement(2907785..2908423) 1 NC_003197.1 cytoplasmic protein 2908423 1254289 STM2766 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461693.1 2907785 R 99287 CDS NP_461694.1 16766079 1254290 complement(2908420..2910402) 1 NC_003197.1 superfamily I; DNA/RNA helicase 2910402 1254290 STM2767 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA/RNA helicase NP_461694.1 2908420 R 99287 CDS NP_461695.1 16766080 1254291 2910681..2910980 1 NC_003197.1 transposase 2910980 1254291 STM2768 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transposase NP_461695.1 2910681 D 99287 CDS NP_461696.1 16766081 1254292 2910977..2911843 1 NC_003197.1 transposase 2911843 1254292 STM2769 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transposase NP_461696.1 2910977 D 99287 CDS NP_461697.1 16766082 1254293 complement(2912623..2913162) 1 NC_003197.1 repressor of fliC (SW:FLJA_SALTY); flagellar synthesis; phase-1 flagellin repressor 2913162 fljA 1254293 fljA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phase-1 flagellin repressor NP_461697.1 2912623 R 99287 CDS NP_461698.1 16766083 1254294 complement(2913230..2914750) 1 NC_003197.1 structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; phase 2 flagellin 2914750 fljB 1254294 fljB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phase 2 flagellin NP_461698.1 2913230 R 99287 CDS NP_461699.1 16766084 1254295 2914842..2915414 1 NC_003197.1 DNA-invertase hin (SW:HIN_SALTY); regulation of flagellar gene expression by site-specific H inversion of DNA; DNA-invertase Hin 2915414 hin 1254295 hin Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-invertase Hin NP_461699.1 2914842 D 99287 CDS NP_461700.1 16766085 1254296 2916377..2917492 1 NC_003197.1 related to UDP-glucuronosyltransferase; glycosyl transferase 2917492 iroB 1254296 iroB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyl transferase NP_461700.1 2916377 D 99287 CDS NP_461701.1 16766086 1254297 2917573..2921226 1 NC_003197.1 ABC transporter ATP-binding protein 2921226 iroC 1254297 iroC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter ATP-binding protein NP_461701.1 2917573 D 99287 CDS NP_461702.1 16766087 1254298 2921336..2922580 1 NC_003197.1 enterochelin esterase-like protein 2922580 iroD 1254298 iroD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 enterochelin esterase-like protein NP_461702.1 2921336 D 99287 CDS NP_461703.1 16766088 1254299 2922612..2923547 1 NC_003197.1 alpha/beta superfamily; alpha/beta superfamily hydrolase 2923547 iroE 1254299 iroE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alpha/beta superfamily hydrolase NP_461703.1 2922612 D 99287 CDS NP_461704.2 228960703 1254300 complement(2923589..2925763) 1 NC_003197.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; iron-enterobactin outer membrane transporter FepA 2925763 iroN 1254300 iroN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 iron-enterobactin outer membrane transporter FepA NP_461704.2 2923589 R 99287 CDS NP_461706.1 16766091 1254303 complement(2926802..2927854) 1 NC_003197.1 secreted effector protein PipB2 2927854 pipB2 1254303 pipB2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secreted effector protein PipB2 NP_461706.1 2926802 R 99287 CDS NP_461707.1 16766092 1254304 2928373..2929302 1 NC_003197.1 VirK-like protein 2929302 virK 1254304 virK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 VirK-like protein NP_461707.1 2928373 D 99287 CDS NP_461708.1 16766093 1254305 2929595..2930491 1 NC_003197.1 transcriptional activator 2930491 mig-14 1254305 mig-14 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional activator NP_461708.1 2929595 D 99287 CDS NP_461709.1 16766094 1254306 complement(2931213..2932226) 1 NC_003197.1 nickel transporter 2932226 nixA 1254306 nixA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nickel transporter NP_461709.1 2931213 R 99287 CDS NP_461710.1 16766095 1254307 complement(2932359..2933774) 1 NC_003197.1 tricarboxylic transport regulatory protein 2933774 tctE 1254307 tctE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tricarboxylic transport regulatory protein NP_461710.1 2932359 R 99287 CDS NP_461711.1 16766096 1254308 complement(2933761..2934435) 1 NC_003197.1 transcriptional regulatory protein TctD (SW:TCTD_SALTY); tricarboxylic transport; transcriptional regulator TctD 2934435 tctD 1254308 tctD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator TctD NP_461711.1 2933761 R 99287 CDS NP_461712.1 16766097 1254309 2934590..2935567 1 NC_003197.1 tricarboxylic transport protein 2935567 1254309 STM2786 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tricarboxylic transport protein NP_461712.1 2934590 D 99287 CDS NP_461713.2 308065957 1254310 2935582..2936013 1 NC_003197.1 tricarboxylic transport 2936013 1254310 STM2787 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tricarboxylic transport NP_461713.2 2935582 D 99287 CDS NP_461714.1 16766099 1254311 2936024..2937538 1 NC_003197.1 tricarboxylic transport protein 2937538 1254311 STM2788 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tricarboxylic transport protein NP_461714.1 2936024 D 99287 CDS NP_461715.2 161353587 1254312 2937841..2938818 1 NC_003197.1 in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; carbon starvation protein CsiD 2938818 1254312 STM2789 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carbon starvation protein CsiD NP_461715.2 2937841 D 99287 CDS NP_461716.1 16766101 1254313 2938844..2940112 1 NC_003197.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 2940112 ygaF 1254313 ygaF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydroxyglutarate oxidase NP_461716.1 2938844 D 99287 CDS NP_461717.1 16766102 1254314 2940134..2941582 1 NC_003197.1 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 2941582 gabD 1254314 gabD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 succinate-semialdehyde dehydrogenase I NP_461717.1 2940134 D 99287 CDS NP_461718.1 16766103 1254315 2941597..2942880 1 NC_003197.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2942880 gabT 1254315 gabT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-aminobutyrate aminotransferase NP_461718.1 2941597 D 99287 CDS NP_461719.1 16766104 1254316 2943010..2944410 1 NC_003197.1 RpoS dependent gamma-aminobutyrate transport protein 2944410 gabP 1254316 gabP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RpoS dependent gamma-aminobutyrate transport protein NP_461719.1 2943010 D 99287 CDS NP_461720.1 16766105 1254317 2944452..2945129 1 NC_003197.1 regulator of gab gene expression; GntR family transcriptional repressor 2945129 ygaE 1254317 ygaE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GntR family transcriptional repressor NP_461720.1 2944452 D 99287 CDS NP_461721.1 16766106 1254318 complement(2945151..2945600) 1 NC_003197.1 LysM domain; LysM domain/BON superfamily protein 2945600 ygaU 1254318 ygaU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysM domain/BON superfamily protein NP_461721.1 2945151 R 99287 CDS NP_461722.1 16766107 1254319 complement(2945700..2945858) 1 NC_003197.1 YqaE family; transporter 2945858 yqaE 1254319 yqaE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transporter NP_461722.1 2945700 R 99287 CDS NP_461723.1 16766108 1254320 2946041..2946340 1 NC_003197.1 ArsR family; ArsR family regulatory protein 2946340 1254320 STM2797 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ArsR family regulatory protein NP_461723.1 2946041 D 99287 CDS NP_461724.1 16766109 1254321 2946350..2946877 1 NC_003197.1 rhodanese-like sulfurtransferase 2946877 ygaP 1254321 ygaP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rhodanese-like sulfurtransferase NP_461724.1 2946350 D 99287 CDS YP_006892403.1 409994433 13865709 2946956..2947135 1 NC_003197.1 hypothetical protein 2947135 13865709 STM05615 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892403.1 2946956 D 99287 CDS NP_461725.1 16766110 1254322 complement(2947225..2947626) 1 NC_003197.1 DNA-binding protein STPA (SW:STPA_SALTY); has chaperone activity; DNA binding protein StpA 2947626 stpA 1254322 stpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA binding protein StpA NP_461725.1 2947225 R 99287 CDS NP_461726.1 16766111 1254323 2948325..2948774 1 NC_003197.1 L-alanine exporter AlaE 2948774 1254323 STM2800 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-alanine exporter AlaE NP_461726.1 2948325 D 99287 CDS NP_461727.1 16766112 1254324 complement(2948809..2949159) 1 NC_003197.1 cytoplasmic protein 2949159 ygaC 1254324 ygaC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461727.1 2948809 R 99287 CDS NP_461728.1 16766113 1254325 2949309..2949647 1 NC_003197.1 inner membrane protein 2949647 ygaM 1254325 ygaM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461728.1 2949309 D 99287 CDS NP_461729.1 16766114 1254326 complement(2949731..2951065) 1 NC_003197.1 GntR family regulatory protein 2951065 1254326 STM2803 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GntR family regulatory protein NP_461729.1 2949731 R 99287 CDS NP_461730.1 16766115 1254327 2951154..2951585 1 NC_003197.1 cytoplasmic protein 2951585 1254327 STM2804 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461730.1 2951154 D 99287 CDS NP_951053.1 39980857 2673735 2951582..2951758 1 NC_003197.1 hypothetical protein 2951758 2673735 STM2804.1n Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_951053.1 2951582 D 99287 CDS NP_461731.1 16766116 1254328 2951857..2952102 1 NC_003197.1 glutaredoxin-like protein NrdH (SW:NRDH_SALTY); hydrogen donor; glutaredoxin-like protein 2952102 nrdH 1254328 nrdH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutaredoxin-like protein NP_461731.1 2951857 D 99287 CDS NP_461732.1 16766117 1254329 2952099..2952509 1 NC_003197.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 2952509 nrdI 1254329 nrdI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonucleotide reductase stimulatory protein NP_461732.1 2952099 D 99287 CDS NP_461733.1 16766118 1254330 2952482..2954626 1 NC_003197.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2954626 nrdE 1254330 nrdE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonucleotide-diphosphate reductase subunit alpha NP_461733.1 2952482 D 99287 CDS NP_461734.1 16766119 1254331 2954637..2955596 1 NC_003197.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2955596 nrdF 1254331 nrdF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonucleotide-diphosphate reductase subunit beta NP_461734.1 2954637 D 99287 CDS NP_461735.1 16766120 1254332 2955951..2957153 1 NC_003197.1 with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine ABC transporter ATP-binding protein ProV 2957153 proV 1254332 proV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycine betaine ABC transporter ATP-binding protein ProV NP_461735.1 2955951 D 99287 CDS NP_461736.1 16766121 1254333 2957146..2958210 1 NC_003197.1 with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine ABC transporter premease ProW 2958210 proW 1254333 proW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycine betaine ABC transporter premease ProW NP_461736.1 2957146 D 99287 CDS NP_461737.1 16766122 1254334 2958280..2959275 1 NC_003197.1 with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine ABC transporter substrate-binding protein ProX 2959275 proX 1254334 proX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycine betaine ABC transporter substrate-binding protein ProX NP_461737.1 2958280 D 99287 CDS NP_461738.1 16766123 1254335 2959440..2960624 1 NC_003197.1 inner membrane protein 2960624 1254335 STM2812 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461738.1 2959440 D 99287 CDS NP_461739.1 16766124 1254336 2961121..2961651 1 NC_003197.1 DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor 2961651 emrR 1254336 emrR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional repressor NP_461739.1 2961121 D 99287 CDS NP_461740.1 16766125 1254337 2961778..2962950 1 NC_003197.1 multidrug resistance secretion protein 2962950 emrA 1254337 emrA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug resistance secretion protein NP_461740.1 2961778 D 99287 CDS NP_461741.1 16766126 1254338 2962967..2964505 1 NC_003197.1 multidrug transport protein 2964505 emrB 1254338 emrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug transport protein NP_461741.1 2962967 D 99287 CDS NP_461742.1 16766127 1254339 complement(2964554..2965924) 1 NC_003197.1 glycoporin 2965924 1254339 STM2816 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycoporin NP_461742.1 2964554 R 99287 CDS NP_461743.1 16766128 1254340 complement(2966270..2966785) 1 NC_003197.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteine lyase 2966785 luxS 1254340 luxS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 S-ribosylhomocysteine lyase NP_461743.1 2966270 R 99287 CDS NP_461744.1 16766129 1254341 complement(2966935..2968491) 1 NC_003197.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 2968491 gshA 1254341 gshA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamate--cysteine ligase NP_461744.1 2966935 R 99287 CDS NP_461745.1 16766130 1254342 complement(2968568..2968993) 1 NC_003197.1 inner membrane protein 2968993 yqaA 1254342 yqaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461745.1 2968568 R 99287 CDS NP_461746.1 16766131 1254343 complement(2968990..2969556) 1 NC_003197.1 YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; bifunctional fructose-1 phosphate/6-phosphogluconate phosphatase 2969556 yqaB 1254343 yqaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional fructose-1 phosphate/6-phosphogluconate phosphatase NP_461746.1 2968990 R 99287 CDS NP_461747.1 16766132 1254349 complement(2970951..2971136) 1 NC_003197.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 2971136 csrA 1254349 csrA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carbon storage regulator NP_461747.1 2970951 R 99287 CDS NP_461748.1 16766133 1254350 complement(2971371..2974001) 1 NC_003197.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanine--tRNA ligase 2974001 alaS 1254350 alaS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alanine--tRNA ligase NP_461748.1 2971371 R 99287 CDS NP_461749.1 16766134 1254351 complement(2974237..2974737) 1 NC_003197.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 2974737 recX 1254351 recX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 recombination regulator RecX NP_461749.1 2974237 R 99287 CDS NP_461750.1 16766135 1254352 complement(2974854..2975915) 1 NC_003197.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 2975915 recA 1254352 recA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 recombinase A NP_461750.1 2974854 R 99287 CDS NP_461751.1 16766136 1254353 complement(2976000..2976497) 1 NC_003197.1 NMN amidohydrolase 2976497 ygaD 1254353 ygaD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NMN amidohydrolase NP_461751.1 2976000 R 99287 CDS NP_461752.1 16766137 1254354 complement(2976975..2978054) 1 NC_003197.1 membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B 2978054 mltB 1254354 mltB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 murein hydrolase B NP_461752.1 2976975 R 99287 CDS NP_461753.1 16766138 1254355 2978308..2978871 1 NC_003197.1 PTS system glucitol/sorbitol-specific transporter subunit IIC 2978871 srlA 1254355 srlA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system glucitol/sorbitol-specific transporter subunit IIC NP_461753.1 2978308 D 99287 CDS NP_461754.1 16766139 1254356 2978868..2979839 1 NC_003197.1 PTS system glucitol/sorbitol-specific transporter subunit IICB 2979839 srlE 1254356 srlE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system glucitol/sorbitol-specific transporter subunit IICB NP_461754.1 2978868 D 99287 CDS NP_461755.1 16766140 1254357 2979851..2980213 1 NC_003197.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucitol/sorbitol-specific transporter subunit IIA 2980213 slrB 1254357 slrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system glucitol/sorbitol-specific transporter subunit IIA NP_461755.1 2979851 D 99287 CDS NP_461756.1 16766141 1254358 2980225..2981004 1 NC_003197.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; glucitol/sorbitol-6-phosphate dehydrogenase 2981004 srlD 1254358 srlD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucitol/sorbitol-6-phosphate dehydrogenase NP_461756.1 2980225 D 99287 CDS NP_461757.1 16766142 1254359 2981080..2981439 1 NC_003197.1 regulator for glucitol utilization; DNA-binding transcriptional activator GutM 2981439 gutM 1254359 gutM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional activator GutM NP_461757.1 2981080 D 99287 CDS NP_461758.1 16766143 1254360 2981637..2982410 1 NC_003197.1 regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 2982410 srlR 1254360 srlR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional repressor SrlR NP_461758.1 2981637 D 99287 CDS NP_461759.2 39546349 1254361 2982403..2983368 1 NC_003197.1 catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; arabinose 5-phosphate isomerase GutQ 2983368 gutQ 1254361 gutQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arabinose 5-phosphate isomerase GutQ NP_461759.2 2982403 D 99287 CDS NP_461760.1 16766145 1254362 complement(2983365..2984885) 1 NC_003197.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 2984885 ygaA 1254362 ygaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic nitric oxide reductase transcriptional regulator NP_461760.1 2983365 R 99287 CDS NP_461761.1 16766146 1254363 2985071..2986510 1 NC_003197.1 detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 2986510 1254363 STM2840 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic nitric oxide reductase flavorubredoxin NP_461761.1 2985071 D 99287 CDS NP_461762.1 16766147 1254364 2986507..2987640 1 NC_003197.1 catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 2987640 ygbD 1254364 ygbD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitric oxide reductase NP_461762.1 2986507 D 99287 CDS NP_461763.1 16766148 1254365 complement(2987737..2989977) 1 NC_003197.1 hydrogenase maturation protein 2989977 hypF 1254365 hypF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase maturation protein NP_461763.1 2987737 R 99287 CDS NP_461764.1 16766149 1254366 complement(2990123..2990668) 1 NC_003197.1 involved in electron transport from formate to hydrogen; electron transport protein HydN 2990668 hydN 1254366 hydN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 electron transport protein HydN NP_461764.1 2990123 R 99287 CDS NP_461765.1 16766150 1254367 complement(2990869..2991678) 1 NC_003197.1 periplasmic protein; hypothetical protein 2991678 1254367 STM2844 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461765.1 2990869 R 99287 CDS NP_461766.1 16766151 1254368 complement(2991705..2992175) 1 NC_003197.1 involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease 2992175 hycI 1254368 hycI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase 3 maturation protease NP_461766.1 2991705 R 99287 CDS NP_461767.1 16766152 1254369 complement(2992168..2992578) 1 NC_003197.1 hydrogenase 3 large subunit processing protein 2992578 hycH 1254369 hycH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase 3 large subunit processing protein NP_461767.1 2992168 R 99287 CDS NP_461768.1 16766153 1254370 complement(2992575..2993342) 1 NC_003197.1 hydrogenase 2993342 hycG 1254370 hycG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase NP_461768.1 2992575 R 99287 CDS NP_461769.1 16766154 1254371 complement(2993342..2993884) 1 NC_003197.1 electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate; formate hydrogenlyase complex iron-sulfur subunit 2993884 hycF 1254371 hycF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate hydrogenlyase complex iron-sulfur subunit NP_461769.1 2993342 R 99287 CDS NP_461770.1 16766155 1254372 complement(2993894..2995603) 1 NC_003197.1 hydrogenase 3 large subunit 2995603 hycE 1254372 hycE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase 3 large subunit NP_461770.1 2993894 R 99287 CDS NP_461771.1 16766156 1254373 complement(2995621..2996544) 1 NC_003197.1 hydrogenase 3 membrane subunit 2996544 hycD 1254373 hycD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase 3 membrane subunit NP_461771.1 2995621 R 99287 CDS NP_461772.1 16766157 1254374 complement(2996547..2998373) 1 NC_003197.1 catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); hydrogenase 3 membrane subunit 2998373 hycC 1254374 hycC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase 3 membrane subunit NP_461772.1 2996547 R 99287 CDS NP_461773.1 16766158 1254375 complement(2998373..2998981) 1 NC_003197.1 hydrogenase-3 iron-sulfur subunit 2998981 hycB 1254375 hycB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase-3 iron-sulfur subunit NP_461773.1 2998373 R 99287 CDS NP_461774.1 16766159 1254376 complement(2999127..2999588) 1 NC_003197.1 regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA 2999588 hycA 1254376 hycA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate hydrogenlyase regulatory protein HycA NP_461774.1 2999127 R 99287 CDS NP_461775.1 16766160 1254377 2999798..3000154 1 NC_003197.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 3000154 hypA 1254377 hypA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase nickel incorporation protein NP_461775.1 2999798 D 99287 CDS NP_461776.1 16766161 1254378 3000223..3001095 1 NC_003197.1 GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 3001095 hypB 1254378 hypB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase nickel incorporation protein HypB NP_461776.1 3000223 D 99287 CDS NP_461777.1 16766162 1254379 3001086..3001358 1 NC_003197.1 HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase; hydrogenase assembly chaperone 3001358 hypC 1254379 hypC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase assembly chaperone NP_461777.1 3001086 D 99287 CDS NP_461778.1 16766163 1254380 3001358..3002476 1 NC_003197.1 hydrogenase expression/formation protein 3002476 hypD 1254380 hypD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase expression/formation protein NP_461778.1 3001358 D 99287 CDS NP_461779.2 39546350 1254381 3002473..3003483 1 NC_003197.1 hydrogenase expression/formation protein 3003483 hypE 1254381 hypE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase expression/formation protein NP_461779.2 3002473 D 99287 CDS NP_461780.1 16766165 1254382 3003702..3005780 1 NC_003197.1 formate hydrogenlyase transcriptional activator for fdhF, hyc and hyp operons EBP family (SW:FHLA_SALTY); formate hydrogen-lyase transcriptional activator 3005780 fhlA 1254382 fhlA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate hydrogen-lyase transcriptional activator NP_461780.1 3003702 D 99287 CDS NP_461781.1 16766166 1254383 complement(3005842..3006186) 1 NC_003197.1 cytoplasmic protein 3006186 ygbA 1254383 ygbA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461781.1 3005842 R 99287 CDS NP_461782.1 16766167 1254384 3006368..3007285 1 NC_003197.1 SitA; Salmonella iron transporter; Fur-regulated; Fur regulated iron ABC transporter substrate-binding protein SitA 3007285 sitA 1254384 sitA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Fur regulated iron ABC transporter substrate-binding protein SitA NP_461782.1 3006368 D 99287 CDS NP_461783.1 16766168 1254385 3007282..3008103 1 NC_003197.1 SitB; Salmonella iron transporter; Fur-regulated; Fur regulated iron ABC transporter ATP-binding protein SitB 3008103 sitB 1254385 sitB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Fur regulated iron ABC transporter ATP-binding protein SitB NP_461783.1 3007282 D 99287 CDS NP_461784.1 16766169 1254386 3008100..3008960 1 NC_003197.1 SitC; Salmonella iron transporter; Fur-regulated; Fur regulated iron ABC transporter permease SitC 3008960 sitC 1254386 sitC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Fur regulated iron ABC transporter permease SitC NP_461784.1 3008100 D 99287 CDS NP_461785.1 16766170 1254387 3008951..3009799 1 NC_003197.1 SitD; Salmonella iron transporter; Fur-regulated; Fur regulated iron ABC transporter permease SitD 3009799 sitD 1254387 sitD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Fur regulated iron ABC transporter permease SitD NP_461785.1 3008951 D 99287 CDS NP_461786.1 16766171 1254388 complement(3009898..3010806) 1 NC_003197.1 invasion protein; inhbits activation of key proinflammatory transcription factor NF-kappaB; secreted effector protein 3010806 avrA 1254388 avrA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secreted effector protein NP_461786.1 3009898 R 99287 CDS NP_461787.1 16766172 1254389 complement(3010967..3011722) 1 NC_003197.1 transcriptional regulator SprB; transcriptional regulator 3011722 sprB 1254389 sprB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_461787.1 3010967 R 99287 CDS NP_461788.1 16766173 1254390 complement(3012107..3012994) 1 NC_003197.1 SprA; HilC; helix-turn-helix protein; AraC family; activator for invasion genes; derepresses hilA expression; transcriptional regulator SirC 3012994 sirC 1254390 sirC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator SirC NP_461788.1 3012107 R 99287 CDS NP_461789.1 16766174 1254391 complement(3013339..3013791) 1 NC_003197.1 cytoplasmic protein 3013791 orgC 1254391 orgC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461789.1 3013339 R 99287 CDS NP_461790.1 16766175 1254392 complement(3013788..3014468) 1 NC_003197.1 oxygen-regulated invasion protein OrgB (SW:ORGB_SALTY); flagellar biosynthesis/type III secretion apparatus; oxygen-regulated invasion protein OrgB 3014468 orgB 1254392 orgB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxygen-regulated invasion protein OrgB NP_461790.1 3013788 R 99287 CDS NP_461791.1 16766176 1254393 complement(3014425..3015024) 1 NC_003197.1 oxygen-regulated invasion protein OrgA (SW:ORGA_SALTY); flagellar biosynthesis/type III secretion apparatus; oxygen-regulated invasion protein OrgA 3015024 orgA 1254393 orgA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxygen-regulated invasion protein OrgA NP_461791.1 3014425 R 99287 CDS NP_461792.1 16766177 1254394 complement(3014996..3015754) 1 NC_003197.1 needle complex inner membrane lipoprotein; cell invasion protein; interacts with PrgH and forms oligomeric rings; type III secretion apparatus; secretion system lipoprotein PrgK 3015754 prgK 1254394 prgK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system lipoprotein PrgK NP_461792.1 3014996 R 99287 CDS NP_461793.1 16766178 1254395 complement(3015751..3016056) 1 NC_003197.1 needle complex minor subunit; invasion protein; may cap needle complex; type III secretion apparatus; secretion system protein PrgJ 3016056 prgJ 1254395 prgJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system protein PrgJ NP_461793.1 3015751 R 99287 CDS NP_461794.1 16766179 1254396 complement(3016075..3016317) 1 NC_003197.1 needle complex major subunit; invasion protein; type III secretion apparatus; secretion system protein PrgI 3016317 prgI 1254396 prgI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system protein PrgI NP_461794.1 3016075 R 99287 CDS NP_461795.1 16766180 1254397 complement(3016342..3017520) 1 NC_003197.1 needle complex inner membrane protein; invasion protein; interacts with PrgK; tetarmerizes; with PrgK forms multimeric ring-shaped structures; type III secretion apparatus; secretion system protein PrgH 3017520 prgH 1254397 prgH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secretion system protein PrgH NP_461795.1 3016342 R 99287 CDS NP_461796.1 16766181 1254398 3017836..3018765 1 NC_003197.1 HilD; helix-turn-helix proteins; AraC family; activator for invasion genes; derepresses hilA expression; transcriptional regulator HilD 3018765 hilD 1254398 hilD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator HilD NP_461796.1 3017836 D 99287 CDS NP_461797.1 16766182 1254399 3019856..3021517 1 NC_003197.1 Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; transcriptional regulator HilA 3021517 hilA 1254399 hilA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator HilA NP_461797.1 3019856 D 99287 CDS NP_461798.1 16766183 1254400 3021535..3022017 1 NC_003197.1 invasion associated gene protein IagB (SW:IAGB_SALTY); invasion protein IagB 3022017 iagB 1254400 iagB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 invasion protein IagB NP_461798.1 3021535 D 99287 CDS NP_461799.1 16766184 1254401 complement(3022071..3023702) 1 NC_003197.1 protein tyrosine phosphatase/GTPase activating protein; translocated protein; type III secretion; antagonizes bacterial-encoded exchange factors SopE and SopE2 by interfering with stimulation of Cdc42 and Rac1; binds Rac1; secreted effector protein SptP 3023702 sptP 1254401 sptP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secreted effector protein SptP NP_461799.1 3022071 R 99287 CDS NP_461800.1 16766185 1254402 complement(3023689..3024081) 1 NC_003197.1 SicP; virulence protein; chaperone for SptP; type III secretion; chaperone protein SicP 3024081 sicP 1254402 sicP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone protein SicP NP_461800.1 3023689 R 99287 CDS YP_006892404.1 409994434 13865715 complement(3024108..3024332) 1 NC_003197.1 hypothetical protein 3024332 13865715 STM05625 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892404.1 3024108 R 99287 CDS NP_461802.1 16766187 1254404 complement(3024412..3024660) 1 NC_003197.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein IacP 3024660 iacP 1254404 iacP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acyl carrier protein IacP NP_461802.1 3024412 R 99287 CDS NP_461803.1 16766188 1254405 complement(3024679..3026736) 1 NC_003197.1 Salmonella invasion protein SipA; binds actin and promotes polymerization; results in membrane ruffling and internalization due to cytoskeleton rearrangements; cell invasion protein SipA 3026736 sipA 1254405 sipA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell invasion protein SipA NP_461803.1 3024679 R 99287 CDS NP_461804.1 16766189 1254406 complement(3026755..3027786) 1 NC_003197.1 cell invasion protein SspD protein; involved in translocating secreted proteins to host cells; translocon; type III secretion; cell invasion protein SipD 3027786 sipD 1254406 sipD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell invasion protein SipD NP_461804.1 3026755 R 99287 CDS NP_461805.1 16766190 1254407 complement(3027857..3029086) 1 NC_003197.1 cell invasion protein SspC; involved in translocating secreted proteins to host cell; translocon; type III secretion; inserted into host cell plasma membrane; interacts with SipC; cell invasion protein SipC 3029086 sipC 1254407 sipC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell invasion protein SipC NP_461805.1 3027857 R 99287 CDS NP_461806.1 16766191 1254408 complement(3029114..3030895) 1 NC_003197.1 cell invasion protein SspB, SipB; involved in translocating secreted proteins to host cell; translocon; type III secretion; inserted into host cell plasma membrane; interacts with SipC; cell invasion protein SipB 3030895 sipB 1254408 sipB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell invasion protein SipB NP_461806.1 3029114 R 99287 CDS NP_461807.1 16766192 1254409 complement(3030898..3031395) 1 NC_003197.1 surface presentation of antigens protein SpaT (SW:SPAT_SALTY); surface presentation of antigens; secretory proteins; partitioning factor for SipB/C; prevents premature association of SipB/C; regulates several promoters with InvF; chaperone protein SicA 3031395 sicA 1254409 sicA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone protein SicA NP_461807.1 3030898 R 99287 CDS NP_461808.1 16766193 1254410 complement(3031533..3032603) 1 NC_003197.1 Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS 3032603 spaS 1254410 spaS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 surface presentation of antigens protein SpaS NP_461808.1 3031533 R 99287 CDS NP_461809.1 16766194 1254411 complement(3032590..3033381) 1 NC_003197.1 needle complex export protein; inner membrane secretory protein; type III secretion apparatus; surface presentation of antigens protein SpaR 3033381 spaR 1254411 spaR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 surface presentation of antigens protein SpaR NP_461809.1 3032590 R 99287 CDS NP_461810.1 16766195 1254412 complement(3033385..3033645) 1 NC_003197.1 surface presentation of antigens protein SpaQ (SW:SPAQ_SALTY); inner membrane secretory protein; type III secretion apparatus; surface presentation of antigens protein SpaQ 3033645 spaQ 1254412 spaQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 surface presentation of antigens protein SpaQ NP_461810.1 3033385 R 99287 CDS NP_461811.1 16766196 1254413 complement(3033671..3034345) 1 NC_003197.1 part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP 3034345 spaP 1254413 spaP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 surface presentation of antigens protein SpaP NP_461811.1 3033671 R 99287 CDS NP_461812.1 16766197 1254414 complement(3034335..3035246) 1 NC_003197.1 involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; surface presentation of antigens protein SpaO 3035246 spaO 1254414 spaO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 surface presentation of antigens protein SpaO NP_461812.1 3034335 R 99287 CDS NP_461813.1 16766198 1254415 complement(3035246..3036256) 1 NC_003197.1 surface presentation of antigens protein SpaN (SW:SPAN_SALTY); surface presentation of antigens; secretory proteins; surface presentation of antigens protein SpaN 3036256 spaN 1254415 spaN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 surface presentation of antigens protein SpaN NP_461813.1 3035246 R 99287 CDS NP_461814.1 16766199 1254416 complement(3036256..3036699) 1 NC_003197.1 surface presentation of antigens protein SpaM (SW:SPAM_SALTY); secretory proteins; type III secretion apparatus; surface presentation of antigens protein SpaM 3036699 invI 1254416 invI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 surface presentation of antigens protein SpaM NP_461814.1 3036256 R 99287 CDS NP_461815.1 16766200 1254417 complement(3036677..3037972) 1 NC_003197.1 Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL 3037972 invC 1254417 invC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP synthase SpaL NP_461815.1 3036677 R 99287 CDS NP_461816.1 16766201 1254418 complement(3037969..3038376) 1 NC_003197.1 surface presentation of antigens protein SpaK (SW:SPAK_SALTY); secretory protein; chaperone for SopE/SopE2; type III secretion; surface presentation of antigens protein SpaK 3038376 invB 1254418 invB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 surface presentation of antigens protein SpaK NP_461816.1 3037969 R 99287 CDS NP_461817.1 16766202 1254419 complement(3038400..3040457) 1 NC_003197.1 needle complex export protein; inner membrane protein; type III secretion apparatus; invasion protein InvA 3040457 invA 1254419 invA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 invasion protein InvA NP_461817.1 3038400 R 99287 CDS NP_461818.1 16766203 1254420 complement(3040482..3041600) 1 NC_003197.1 invasion protein InvE (SW:INVE_SALTY); interacts with SecA-SipB/C complex; essential for translocation into host cells; invasion protein InvE 3041600 invE 1254420 invE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 invasion protein InvE NP_461818.1 3040482 R 99287 CDS NP_461819.1 16766204 1254421 complement(3041597..3043285) 1 NC_003197.1 InvG protein (SW:INVG_SALTY); forms ring-shaped structure in outer membrane; requires InvH for stability; type III secretion apparatus; invasion protein InvG 3043285 invG 1254421 invG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 invasion protein InvG NP_461819.1 3041597 R 99287 CDS NP_461820.1 16766205 1254422 complement(3043282..3043932) 1 NC_003197.1 invasion protein InvF (SW:INVF_SALTY); SPI-1 transcription factor; activated by HilA; requires SicA as a co-factor; controls sigD/sopB, sopE and sicAsipBCDA genes; transcriptional regulator InvF 3043932 invF 1254422 invF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator InvF NP_461820.1 3043282 R 99287 CDS NP_461821.1 16766206 1254423 3044389..3044832 1 NC_003197.1 needle complex outer membrane lipoprotein; stabilizes InvG secretin; type III secretion apparatus; invasion lipoprotein InvH 3044832 invH 1254423 invH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 invasion lipoprotein InvH NP_461821.1 3044389 D 99287 CDS NP_461822.1 16766207 1254424 3045263..3045712 1 NC_003197.1 cytoplasmic protein 3045712 1254424 STM2901 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461822.1 3045263 D 99287 CDS NP_461823.1 16766208 1254425 3045697..3046044 1 NC_003197.1 cytoplasmic protein 3046044 1254425 STM2902 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461823.1 3045697 D 99287 CDS NP_461824.1 16766209 1254426 complement(3046317..3046643) 1 NC_003197.1 cytoplasmic protein 3046643 1254426 STM2903 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461824.1 3046317 R 99287 CDS NP_461825.1 16766210 1254427 3047332..3047622 1 NC_003197.1 hypothetical protein 3047622 1254427 STM2904 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461825.1 3047332 D 99287 CDS NP_461826.1 16766211 1254428 3047619..3048146 1 NC_003197.1 acetyltransferase 3048146 1254428 STM2905 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyltransferase NP_461826.1 3047619 D 99287 CDS NP_461828.1 16766213 1254430 3048771..3049427 1 NC_003197.1 serine/threonine-protein phosphatase 3049427 pphB 1254430 pphB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 serine/threonine-protein phosphatase NP_461828.1 3048771 D 99287 CDS NP_461829.1 16766214 1254431 complement(3049599..3050120) 1 NC_003197.1 cytoplasmic protein 3050120 1254431 STM2908 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461829.1 3049599 R 99287 CDS NP_461830.1 16766215 1254432 3050279..3052846 1 NC_003197.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3052846 mutS 1254432 mutS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA mismatch repair protein MutS NP_461830.1 3050279 D 99287 CDS NP_461831.1 16766216 1254433 complement(3052902..3053282) 1 NC_003197.1 cytoplasmic protein 3053282 1254433 STM2910 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461831.1 3052902 R 99287 CDS NP_461832.1 16766217 1254434 complement(3053279..3054487) 1 NC_003197.1 permease 3054487 1254434 STM2911 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_461832.1 3053279 R 99287 CDS NP_461833.1 16766218 1254435 3054575..3055507 1 NC_003197.1 LysR family transcriptional regulator 3055507 1254435 STM2912 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_461833.1 3054575 D 99287 CDS NP_461834.1 16766219 1254436 complement(3055549..3057045) 1 NC_003197.1 permease 3057045 1254436 STM2913 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_461834.1 3055549 R 99287 CDS NP_461835.1 16766220 1254437 complement(3057042..3057992) 1 NC_003197.1 nucleoside-diphosphate-sugar epimerase 3057992 1254437 STM2914 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleoside-diphosphate-sugar epimerase NP_461835.1 3057042 R 99287 CDS NP_461836.1 16766221 1254438 complement(3058032..3058808) 1 NC_003197.1 hydroxypyruvate isomerase 3058808 ygbM 1254438 ygbM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydroxypyruvate isomerase NP_461836.1 3058032 R 99287 CDS NP_461837.1 16766222 1254439 complement(3058813..3059451) 1 NC_003197.1 fuculose phosphate aldolase 3059451 ygbL 1254439 ygbL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fuculose phosphate aldolase NP_461837.1 3058813 R 99287 CDS NP_461838.1 16766223 1254440 complement(3059448..3060710) 1 NC_003197.1 tRNA synthase 3060710 ygbK 1254440 ygbK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA synthase NP_461838.1 3059448 R 99287 CDS NP_461839.1 16766224 1254441 complement(3060704..3061627) 1 NC_003197.1 3-hydroxyisobutyrate dehydrogenase 3061627 ygbJ 1254441 ygbJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-hydroxyisobutyrate dehydrogenase NP_461839.1 3060704 R 99287 CDS NP_461840.1 16766225 1254442 3061824..3062588 1 NC_003197.1 DeoR family regulatory protein 3062588 ygbI 1254442 ygbI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DeoR family regulatory protein NP_461840.1 3061824 D 99287 CDS NP_461841.1 16766226 1254443 complement(3062607..3063011) 1 NC_003197.1 transcriptional regulator 3063011 1254443 STM2920 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_461841.1 3062607 R 99287 CDS NP_461842.1 16766227 1254444 3063182..3063775 1 NC_003197.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 3063775 1254444 STM2921 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NP_461842.1 3063182 D 99287 CDS NP_461843.1 16766228 1254445 3063775..3065202 1 NC_003197.1 3-polyprenyl-4-hydroxybenzoate decarboxylase 3065202 1254445 STM2922 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-polyprenyl-4-hydroxybenzoate decarboxylase NP_461843.1 3063775 D 99287 CDS NP_461844.1 16766229 1254446 3065213..3065449 1 NC_003197.1 cytoplasmic protein 3065449 1254446 STM2923 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461844.1 3065213 D 99287 CDS NP_461845.1 16766230 1254447 complement(3065494..3066486) 1 NC_003197.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 3066486 rpoS 1254447 rpoS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNA polymerase sigma factor RpoS NP_461845.1 3065494 R 99287 CDS NP_461846.1 16766231 1254448 complement(3066549..3067682) 1 NC_003197.1 Murein hydrolase activator NlpD 3067682 nlpD 1254448 nlpD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Murein hydrolase activator NlpD NP_461846.1 3066549 R 99287 CDS NP_461847.1 16766232 1254449 complement(3067858..3068484) 1 NC_003197.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 3068484 pcm 1254449 pcm Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protein-L-isoaspartate O-methyltransferase NP_461847.1 3067858 R 99287 CDS NP_461848.1 16766233 1254450 complement(3068478..3069239) 1 NC_003197.1 stationary phase survival protein SurE; catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; 5'/3'-nucleotidase SurE 3069239 surE 1254450 surE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 5'/3'-nucleotidase SurE NP_461848.1 3068478 R 99287 CDS NP_461849.1 16766234 1254451 complement(3069220..3070269) 1 NC_003197.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 3070269 truD 1254451 truD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA pseudouridine synthase D NP_461849.1 3069220 R 99287 CDS NP_461850.1 16766235 1254452 complement(3070266..3070745) 1 NC_003197.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3070745 ispF 1254452 ispF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase NP_461850.1 3070266 R 99287 CDS NP_461851.1 16766236 1254453 complement(3070745..3071455) 1 NC_003197.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3071455 ispD 1254453 ispD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NP_461851.1 3070745 R 99287 CDS NP_461852.1 16766237 1254454 complement(3071474..3071785) 1 NC_003197.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 3071785 ftsB 1254454 ftsB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division protein FtsB NP_461852.1 3071474 R 99287 CDS NP_461853.2 409994435 1254455 complement(3071976..3072299) 1 NC_003197.1 inner membrane protein 3072299 ygbE 1254455 ygbE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461853.2 3071976 R 99287 CDS NP_461854.1 16766239 1254456 complement(3072350..3072955) 1 NC_003197.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenyly-lsulfate kinase 3072955 cysC 1254456 cysC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 adenyly-lsulfate kinase NP_461854.1 3072350 R 99287 CDS NP_461855.1 16766240 1254457 complement(3072942..3074381) 1 NC_003197.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 3074381 cysN 1254457 cysN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfate adenylyltransferase subunit 1 NP_461855.1 3072942 R 99287 CDS NP_461856.1 16766241 1254458 complement(3074391..3075299) 1 NC_003197.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 3075299 cysD 1254458 cysD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfate adenylyltransferase subunit 2 NP_461856.1 3074391 R 99287 CDS NP_461857.1 16766242 1254459 3075550..3076596 1 NC_003197.1 catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase isozyme conversion aminopeptidase 3076596 iap 1254459 iap Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alkaline phosphatase isozyme conversion aminopeptidase NP_461857.1 3075550 D 99287 CDS NP_461858.1 16766243 1254460 complement(3078244..3078540) 1 NC_003197.1 inner membrane protein 3078540 ygbF 1254460 ygbF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461858.1 3078244 R 99287 CDS NP_461859.1 16766244 1254461 complement(3078537..3079457) 1 NC_003197.1 CRISPR-associated endonuclease Cas1 3079457 1254461 STM2938 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 CRISPR-associated endonuclease Cas1 NP_461859.1 3078537 R 99287 CDS NP_461860.1 16766245 1254462 complement(3079454..3080104) 1 NC_003197.1 cytoplasmic protein 3080104 ygcH 1254462 ygcH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461860.1 3079454 R 99287 CDS NP_461861.1 16766246 1254463 complement(3080086..3080832) 1 NC_003197.1 cytoplasmic protein 3080832 1254463 STM2940 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461861.1 3080086 R 99287 CDS NP_461862.1 16766247 1254464 complement(3080843..3081901) 1 NC_003197.1 cytoplasmic protein 3081901 yghJ 1254464 yghJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461862.1 3080843 R 99287 CDS NP_461863.1 16766248 1254465 complement(3081915..3082475) 1 NC_003197.1 transposase 3082475 1254465 STM2942 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transposase NP_461863.1 3081915 R 99287 CDS NP_461864.1 16766249 1254466 complement(3082472..3084028) 1 NC_003197.1 cytoplasmic protein 3084028 1254466 STM2943 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461864.1 3082472 R 99287 CDS NP_461865.1 16766250 1254467 complement(3084040..3086703) 1 NC_003197.1 helicase 3086703 ygcB 1254467 ygcB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 helicase NP_461865.1 3084040 R 99287 CDS NP_461866.1 16766251 1254468 3087148..3088101 1 NC_003197.1 hypothetical 36.1 kDa protein in cysH 3'region (ORF4) (SW:YGCC_SALTY); secreted by SPI-1; type III secretion; secreted effector protein SopD 3088101 sopD 1254468 sopD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 secreted effector protein SopD NP_461866.1 3087148 D 99287 CDS NP_461867.1 16766252 1254469 complement(3088189..3088923) 1 NC_003197.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 3088923 cysH 1254469 cysH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoadenosine phosphosulfate reductase NP_461867.1 3088189 R 99287 CDS NP_461868.1 16766253 1254470 complement(3088999..3090711) 1 NC_003197.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase hemoprotein subunit beta 3090711 cysI 1254470 cysI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfite reductase hemoprotein subunit beta NP_461868.1 3088999 R 99287 CDS NP_461869.1 16766254 1254471 complement(3090711..3092510) 1 NC_003197.1 catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase flavoprotein subunit alpha 3092510 cysJ 1254471 cysJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfite reductase flavoprotein subunit alpha NP_461869.1 3090711 R 99287 CDS NP_461870.1 16766255 1254472 3092934..3093296 1 NC_003197.1 6-pyruvoyl tetrahydrobiopterin synthase 3093296 ptpS 1254472 ptpS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 6-pyruvoyl tetrahydrobiopterin synthase NP_461870.1 3092934 D 99287 CDS NP_461871.1 16766256 1254473 complement(3093384..3094181) 1 NC_003197.1 beta-lactamase superfamily II; metal-dependent hydrolase 3094181 1254473 STM2950 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 metal-dependent hydrolase NP_461871.1 3093384 R 99287 CDS NP_461872.1 16766257 1254474 complement(3096557..3097228) 1 NC_003197.1 organic radical activating enzymes; 7-carboxy-7-deazaguanine synthase 3097228 ygcF 1254474 ygcF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 7-carboxy-7-deazaguanine synthase NP_461872.1 3096557 R 99287 CDS NP_461873.1 16766258 1254475 complement(3097364..3098662) 1 NC_003197.1 phosphopyruvate hydratase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; enolase 3098662 eno 1254475 eno Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 enolase NP_461873.1 3097364 R 99287 CDS NP_461874.1 16766259 1254476 complement(3098745..3100382) 1 NC_003197.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 3100382 pyrG 1254476 pyrG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 CTP synthetase NP_461874.1 3098745 R 99287 CDS NP_461875.1 16766260 1254477 complement(3100610..3101410) 1 NC_003197.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 3101410 mazG 1254477 mazG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleoside triphosphate pyrophosphohydrolase NP_461875.1 3100610 R 99287 CDS NP_945168.1 39546351 2673739 complement(3102178..3102468) 1 NC_003197.1 hypothetical protein 3102468 2673739 STM2954.1n Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945168.1 3102178 R 99287 CDS NP_461876.2 39546352 1254478 complement(3102440..3102715) 1 NC_003197.1 contains CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; transcriptional regulator 3102715 1254478 STM2955.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_461876.2 3102440 R 99287 CDS NP_461877.1 16766262 1254479 complement(3102880..3105114) 1 NC_003197.1 (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; (P)ppGpp synthetase I 3105114 relA 1254479 relA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (P)ppGpp synthetase I NP_461877.1 3102880 R 99287 CDS NP_461878.1 16766263 1254480 complement(3105166..3106461) 1 NC_003197.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 3106461 rumA 1254480 rumA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD NP_461878.1 3105166 R 99287 CDS NP_461879.1 16766264 1254481 3106519..3109275 1 NC_003197.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; sensory histidine kinase 3109275 barA 1254481 barA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensory histidine kinase NP_461879.1 3106519 D 99287 CDS NP_461880.1 16766265 1254482 complement(3109319..3110461) 1 NC_003197.1 glycerate kinase 3110461 1254482 STM2959 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerate kinase NP_461880.1 3109319 R 99287 CDS NP_461881.1 16766266 1254483 complement(3110539..3111879) 1 NC_003197.1 d-glucarate dehydratase 3111879 gudD 1254483 gudD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 d-glucarate dehydratase NP_461881.1 3110539 R 99287 CDS NP_461882.1 16766267 1254484 complement(3111900..3113240) 1 NC_003197.1 D-glucarate dehydratase 3113240 ygcY 1254484 ygcY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-glucarate dehydratase NP_461882.1 3111900 R 99287 CDS NP_461883.1 16766268 1254485 complement(3113237..3114595) 1 NC_003197.1 D-glucarate permease 3114595 gudT 1254485 gudT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-glucarate permease NP_461883.1 3113237 R 99287 CDS NP_461884.1 16766269 1254486 complement(3115076..3115525) 1 NC_003197.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 3115525 1254486 STM2963 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flavodoxin NP_461884.1 3115076 R 99287 CDS NP_461885.1 16766270 1254487 complement(3115544..3116326) 1 NC_003197.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 3116326 yqcB 1254487 yqcB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA pseudouridine synthase C NP_461885.1 3115544 R 99287 CDS NP_461886.1 16766271 1254488 complement(3116326..3116655) 1 NC_003197.1 cytoplasmic protein 3116655 yqcC 1254488 yqcC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461886.1 3116326 R 99287 CDS NP_461887.1 16766272 1254490 complement(3117267..3117812) 1 NC_003197.1 SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 3117812 syd 1254490 syd Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SecY interacting protein Syd NP_461887.1 3117267 R 99287 CDS NP_461888.1 16766273 1254491 3117881..3118729 1 NC_003197.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3118729 queF 1254491 queF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 7-cyano-7-deazaguanine reductase NP_461888.1 3117881 D 99287 CDS NP_461889.1 16766274 1254492 3118842..3120206 1 NC_003197.1 nucleotide binding protein 3120206 ygdH 1254492 ygdH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleotide binding protein NP_461889.1 3118842 D 99287 CDS NP_461890.1 16766275 1254493 3120771..3122060 1 NC_003197.1 HAAAP family serine transport protein 3122060 sdaC 1254493 sdaC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HAAAP family serine transport protein NP_461890.1 3120771 D 99287 CDS NP_461891.1 16766276 1254494 3122119..3123486 1 NC_003197.1 L-serine dehydratase 3123486 sdaB 1254494 sdaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-serine dehydratase NP_461891.1 3122119 D 99287 CDS NP_461892.2 409994436 1254495 3123657..3124412 1 NC_003197.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; Flap endonuclease Xni 3124412 xni 1254495 xni Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Flap endonuclease Xni NP_461892.2 3123657 D 99287 CDS NP_461893.1 16766278 1254496 complement(3124504..3125652) 1 NC_003197.1 L-1,2-propanediol oxidoreductase 3125652 fucO 1254496 fucO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-1,2-propanediol oxidoreductase NP_461893.1 3124504 R 99287 CDS NP_461894.1 16766279 1254497 complement(3125669..3126316) 1 NC_003197.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose-1-phosphate aldolase 3126316 fucA 1254497 fucA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-fuculose-1-phosphate aldolase NP_461894.1 3125669 R 99287 CDS NP_461895.1 16766280 1254499 3128220..3129995 1 NC_003197.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3129995 fucI 1254499 fucI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-fucose isomerase NP_461895.1 3128220 D 99287 CDS NP_461896.1 16766281 1254500 3130096..3131514 1 NC_003197.1 L-fuculokinase 3131514 fucK 1254500 fucK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-fuculokinase NP_461896.1 3130096 D 99287 CDS NP_461897.1 16766282 1254501 3131516..3131938 1 NC_003197.1 L-fucose mutarotase 3131938 fucU 1254501 fucU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-fucose mutarotase NP_461897.1 3131516 D 99287 CDS NP_461898.1 16766283 1254502 3131996..3132706 1 NC_003197.1 regulates expression of genes involved in L-fucose utilization; DNA-binding transcriptional activator FucR 3132706 fucR 1254502 fucR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional activator FucR NP_461898.1 3131996 D 99287 CDS NP_461899.1 16766284 1254503 complement(3132765..3133865) 1 NC_003197.1 rRNA large subunit methyltransferase M 3133865 ygdE 1254503 ygdE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA large subunit methyltransferase M NP_461899.1 3132765 R 99287 CDS NP_461900.1 16766285 1254504 complement(3133858..3134253) 1 NC_003197.1 small membrane protein 3134253 ygdD 1254504 ygdD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 small membrane protein NP_461900.1 3133858 R 99287 CDS NP_461901.1 16766286 1254505 complement(3134272..3135189) 1 NC_003197.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3135189 gcvA 1254505 gcvA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional activator GcvA NP_461901.1 3134272 R 99287 CDS NP_461902.1 16766287 1254506 complement(3135536..3135763) 1 NC_003197.1 lipoprotein 3135763 ygdI 1254506 ygdI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein NP_461902.1 3135536 R 99287 CDS NP_461903.1 16766288 1254507 3135956..3137161 1 NC_003197.1 selenocysteine lyase 3137161 csdA 1254507 csdA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 selenocysteine lyase NP_461903.1 3135956 D 99287 CDS NP_461904.1 16766289 1254508 3137161..3137604 1 NC_003197.1 FeS center assembly protein SufE 3137604 sufE 1254508 sufE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 FeS center assembly protein SufE NP_461904.1 3137161 D 99287 CDS NP_461905.2 39546353 1254509 3137877..3138791 1 NC_003197.1 integral membrane protein 3138791 1254509 STM2986.Sc Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integral membrane protein NP_461905.2 3137877 D 99287 CDS NP_461906.1 16766291 1254510 complement(3138843..3139649) 1 NC_003197.1 hypothetical protein 3139649 1254510 STM2987 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461906.1 3138843 R 99287 CDS NP_461907.1 16766292 1254511 complement(3139759..3140856) 1 NC_003197.1 membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 3140856 mltA 1254511 mltA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 murein transglycosylase A NP_461907.1 3139759 R 99287 CDS NP_461908.1 16766293 1254514 complement(3141356..3142609) 1 NC_003197.1 N-acetylmuramoyl-L-alanine amidase 3142609 amiC 1254514 amiC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-acetylmuramoyl-L-alanine amidase NP_461908.1 3141356 R 99287 CDS NP_461909.1 16766294 1254515 3142842..3144173 1 NC_003197.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; amino-acid acetyltransferase 3144173 argA 1254515 argA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amino-acid acetyltransferase NP_461909.1 3142842 D 99287 CDS NP_461910.1 16766295 1254516 complement(3144276..3146111) 1 NC_003197.1 helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha 3146111 recD 1254516 recD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 exonuclease V subunit alpha NP_461910.1 3144276 R 99287 CDS NP_461911.1 16766296 1254517 complement(3146108..3149653) 1 NC_003197.1 helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta 3149653 recB 1254517 recB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 exonuclease V subunit beta NP_461911.1 3146108 R 99287 CDS NP_461912.1 16766297 1254518 complement(3149646..3152534) 1 NC_003197.1 protease III 3152534 ptr 1254518 ptr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protease III NP_461912.1 3149646 R 99287 CDS NP_461913.1 16766298 1254519 complement(3152712..3156083) 1 NC_003197.1 catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma 3156083 recC 1254519 recC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 exonuclease V subunit gamma NP_461913.1 3152712 R 99287 CDS NP_461914.1 16766299 1254520 complement(3156099..3156419) 1 NC_003197.1 prepilin peptidase dependent protein C 3156419 ppdC 1254520 ppdC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 prepilin peptidase dependent protein C NP_461914.1 3156099 R 99287 CDS NP_461915.1 16766300 1254521 complement(3156404..3156811) 1 NC_003197.1 periplasmic protein 3156811 ygdB 1254521 ygdB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_461915.1 3156404 R 99287 CDS NP_461916.1 16766301 1254522 complement(3156808..3157371) 1 NC_003197.1 prepilin peptidase dependent protein B 3157371 ppdB 1254522 ppdB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 prepilin peptidase dependent protein B NP_461916.1 3156808 R 99287 CDS NP_461917.1 16766302 1254523 complement(3157362..3157832) 1 NC_003197.1 prepilin peptidase dependent protein A 3157832 ppdA 1254523 ppdA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 prepilin peptidase dependent protein A NP_461917.1 3157362 R 99287 CDS NP_461918.1 16766303 1254524 complement(3158017..3158811) 1 NC_003197.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 3158811 thyA 1254524 thyA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thymidylate synthase NP_461918.1 3158017 R 99287 CDS NP_461919.1 16766304 1254525 complement(3158818..3159693) 1 NC_003197.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3159693 lgt 1254525 lgt Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 prolipoprotein diacylglyceryl transferase NP_461919.1 3158818 R 99287 CDS NP_461920.1 16766305 1254526 complement(3159909..3162155) 1 NC_003197.1 member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain 3162155 ptsP 1254526 ptsP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain NP_461920.1 3159909 R 99287 CDS NP_461921.1 16766306 1254527 complement(3162168..3162698) 1 NC_003197.1 hydrolyzes diadenosine polyphosphate; RNA pyrophosphohydrolase 3162698 ygdP 1254527 ygdP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNA pyrophosphohydrolase NP_461921.1 3162168 R 99287 CDS NP_951054.1 39980858 2673726 complement(3163049..3163195) 1 NC_003197.1 hypothetical protein 3163195 2673726 STM3004.1n Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_951054.1 3163049 R 99287 CDS NP_461922.1 16766307 1254528 3163381..3164076 1 NC_003197.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein MutH 3164076 mutH 1254528 mutH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA mismatch repair protein MutH NP_461922.1 3163381 D 99287 CDS NP_461923.1 16766308 1254529 3164258..3164971 1 NC_003197.1 integral membrane transport protein 3164971 ygdQ 1254529 ygdQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integral membrane transport protein NP_461923.1 3164258 D 99287 CDS NP_461924.1 16766309 1254530 3165141..3165359 1 NC_003197.1 POT family; POT family peptide transport protein 3165359 ygdR 1254530 ygdR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 POT family peptide transport protein NP_461924.1 3165141 D 99287 CDS NP_461925.1 16766310 1254531 3165550..3166590 1 NC_003197.1 complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; aldo-keto reductase 3166590 tas 1254531 tas Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aldo-keto reductase NP_461925.1 3165550 D 99287 CDS NP_461926.1 16766311 1254532 complement(3166677..3167879) 1 NC_003197.1 lysophospholipid transporter LplT 3167879 ygeD 1254532 ygeD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lysophospholipid transporter LplT NP_461926.1 3166677 R 99287 CDS NP_461927.1 16766312 1254533 complement(3167872..3170031) 1 NC_003197.1 Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase 3170031 aas 1254533 aas Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase NP_461927.1 3167872 R 99287 CDS NP_461928.1 16766313 1254534 3170624..3171652 1 NC_003197.1 controls transcription of galETKM; HTH-type transcriptional regulator GalR 3171652 galR 1254534 galR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator GalR NP_461928.1 3170624 D 99287 CDS NP_461929.1 16766314 1254535 3171663..3172685 1 NC_003197.1 transcriptional regulator 3172685 1254535 STM3012 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_461929.1 3171663 D 99287 CDS NP_461930.1 16766315 1254536 complement(3172695..3173957) 1 NC_003197.1 catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 3173957 lysA 1254536 lysA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diaminopimelate decarboxylase NP_461930.1 3172695 R 99287 CDS NP_461931.1 16766316 1254537 3174075..3175010 1 NC_003197.1 activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; LysR family transcriptional regulator 3175010 lysR 1254537 lysR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_461931.1 3174075 D 99287 CDS NP_461932.1 16766317 1254538 complement(3174982..3175689) 1 NC_003197.1 racemase 3175689 ygeA 1254538 ygeA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 racemase NP_461932.1 3174982 R 99287 CDS NP_461933.1 16766318 1254539 complement(3175802..3177220) 1 NC_003197.1 L-arabinose/proton symport protein 3177220 araE 1254539 araE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-arabinose/proton symport protein NP_461933.1 3175802 R 99287 CDS NP_461934.1 16766319 1254540 complement(3177574..3178335) 1 NC_003197.1 catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase 3178335 kduD 1254540 kduD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-deoxy-D-gluconate 3-dehydrogenase NP_461934.1 3177574 R 99287 CDS NP_461935.1 16766320 1254541 complement(3178392..3179228) 1 NC_003197.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 3179228 kduI 1254541 kduI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase NP_461935.1 3178392 R 99287 CDS NP_461936.1 16766321 1254542 complement(3179658..3180836) 1 NC_003197.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 3180836 yqeF 1254542 yqeF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyl-CoA acetyltransferase NP_461936.1 3179658 R 99287 CDS NP_461937.1 16766322 1254543 complement(3180959..3181822) 1 NC_003197.1 LysR family transcriptional regulator 3181822 1254543 STM3020 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_461937.1 3180959 R 99287 CDS NP_461938.1 16766323 1254544 3181899..3182381 1 NC_003197.1 inner membrane protein 3182381 1254544 STM3021 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461938.1 3181899 D 99287 CDS NP_461939.1 16766324 1254545 3182523..3183752 1 NC_003197.1 transporter 3183752 1254545 STM3022 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transporter NP_461939.1 3182523 D 99287 CDS NP_461940.1 16766325 1254546 complement(3183783..3184055) 1 NC_003197.1 transcriptional repressor RcnR 3184055 yohL 1254546 yohL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional repressor RcnR NP_461940.1 3183783 R 99287 CDS NP_461941.1 16766326 1254547 3184177..3185043 1 NC_003197.1 membrane protein conferring nickel and cobalt resistance; nickel/cobalt efflux protein RcnA 3185043 yohM 1254547 yohM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nickel/cobalt efflux protein RcnA NP_461941.1 3184177 D 99287 CDS NP_461942.1 16766327 1254548 complement(3185253..3186011) 1 NC_003197.1 cytoplasmic protein 3186011 1254548 STM3025 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_461942.1 3185253 R 99287 CDS NP_945169.1 39546354 2673750 complement(3185998..3186510) 1 NC_003197.1 hypothetical protein 3186510 2673750 STM3025.1N Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945169.1 3185998 R 99287 CDS NP_461943.1 16766328 1254549 complement(3186654..3187730) 1 NC_003197.1 outer membrane protein 3187730 1254549 STM3026 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_461943.1 3186654 R 99287 CDS NP_461944.1 16766329 1254550 complement(3187727..3188470) 1 NC_003197.1 fimbrial chaperone 3188470 stdC 1254550 stdC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial chaperone NP_461944.1 3187727 R 99287 CDS NP_461945.1 16766330 1254551 complement(3188511..3191000) 1 NC_003197.1 outer membrane usher protein 3191000 stdB 1254551 stdB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane usher protein NP_461945.1 3188511 R 99287 CDS NP_461946.2 39546355 1254552 complement(3191120..3191680) 1 NC_003197.1 fimbrial-like protein 3191680 stdA 1254552 stdA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial-like protein NP_461946.2 3191120 R 99287 CDS NP_461947.1 16766332 1254553 complement(3192423..3193055) 1 NC_003197.1 periplasmic protein 3193055 1254553 STM3030 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_461947.1 3192423 R 99287 CDS NP_461948.1 16766333 1254554 complement(3193102..3193638) 1 NC_003197.1 Ail/OmpX-like protein 3193638 1254554 STM3031 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Ail/OmpX-like protein NP_461948.1 3193102 R 99287 CDS NP_461949.1 16766334 1254555 complement(3194318..3194776) 1 NC_003197.1 transposase for insertion sequence element IS200 (SW:T200_SALTY); insertion sequence element IS200 transposase 3194776 tnpA_4 1254555 tnpA_4 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 insertion sequence element IS200 transposase NP_461949.1 3194318 R 99287 CDS NP_461950.1 16766335 1254556 complement(3195156..3195554) 1 NC_003197.1 toxin VapC; stability determinant protein; tRNA(fMet)-specific endonuclease VapC 3195554 1254556 STM3033 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA(fMet)-specific endonuclease VapC NP_461950.1 3195156 R 99287 CDS NP_461951.1 16766336 1254557 complement(3195554..3195781) 1 NC_003197.1 antitoxin VapB 3195781 1254557 STM3034 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 antitoxin VapB NP_461951.1 3195554 R 99287 CDS NP_461953.1 16766338 1254559 3196484..3197290 1 NC_003197.1 inner membrane protein 3197290 1254559 STM3036 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461953.1 3196484 D 99287 CDS NP_461954.1 16766339 1254561 complement(3197575..3198333) 1 NC_003197.1 metalloendopeptidase 3198333 1254561 STM3038 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 metalloendopeptidase NP_461954.1 3197575 R 99287 CDS NP_461955.1 16766340 1254562 3198598..3199143 1 NC_003197.1 catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 3199143 idi 1254562 idi Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 isopentenyl-diphosphate delta-isomerase NP_461955.1 3198598 D 99287 CDS NP_461956.1 16766341 1254563 complement(3199219..3200736) 1 NC_003197.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysine--tRNA ligase 3200736 lysS 1254563 lysS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lysine--tRNA ligase NP_461956.1 3199219 R 99287 CDS NP_461957.2 39546356 1254564 complement(3200746..3201822) 1 NC_003197.1 peptide chain release factor 2; RF-2 (SW:RF2_SALTY); peptide chain release factor 2 3201822 prfB 1254564 prfB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptide chain release factor 2 NP_461957.2 3200746 R 99287 CDS NP_461958.1 16766343 1254565 complement(3201949..3203682) 1 NC_003197.1 5'-3' single-stranded-DNA-specific exonuclease; ssDNA-specific exonuclease RecJ 3203682 recJ 1254565 recJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ssDNA-specific exonuclease RecJ NP_461958.1 3201949 R 99287 CDS NP_461959.1 16766344 1254566 complement(3203688..3204401) 1 NC_003197.1 DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC 3204401 dsbC 1254566 dsbC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiol:disulfide interchange protein DsbC NP_461959.1 3203688 R 99287 CDS NP_461960.1 16766345 1254567 complement(3204425..3205321) 1 NC_003197.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; tyrosine recombinase XerD 3205321 xerD 1254567 xerD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tyrosine recombinase XerD NP_461960.1 3204425 R 99287 CDS NP_461961.1 16766346 1254568 3205434..3205955 1 NC_003197.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin 3205955 fldB 1254568 fldB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flavodoxin NP_461961.1 3205434 D 99287 CDS NP_461962.1 16766347 1254569 complement(3206008..3206421) 1 NC_003197.1 inner membrane protein 3206421 ygfX 1254569 ygfX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461962.1 3206008 R 99287 CDS NP_461963.1 16766348 1254570 complement(3206402..3206668) 1 NC_003197.1 antitoxin YgfY 3206668 ygfY 1254570 ygfY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 antitoxin YgfY NP_461963.1 3206402 R 99287 CDS YP_006892405.1 409994437 13865700 3206667..3206903 1 NC_003197.1 hypothetical protein 3206903 13865700 STM05645 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892405.1 3206667 D 99287 CDS NP_461964.1 16766349 1254571 3206918..3207898 1 NC_003197.1 physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; tRNA-modifying protein 3207898 ygfZ 1254571 ygfZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA-modifying protein NP_461964.1 3206918 D 99287 CDS NP_461965.1 16766350 1254572 complement(3208014..3208673) 1 NC_003197.1 hemolysin 3208673 yqfA 1254572 yqfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hemolysin NP_461965.1 3208014 R 99287 CDS NP_461966.1 16766351 1254573 complement(3208837..3209148) 1 NC_003197.1 hypothetical protein 3209148 1254573 STM3050 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461966.1 3208837 R 99287 CDS NP_461967.1 16766352 1254574 3209307..3210740 1 NC_003197.1 6-phospho-beta-glucosidase 3210740 bglA 1254574 bglA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 6-phospho-beta-glucosidase NP_461967.1 3209307 D 99287 CDS NP_461968.1 16766353 1254575 complement(3210788..3211681) 1 NC_003197.1 outer membrane protein 3211681 1254575 STM3052 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_461968.1 3210788 R 99287 CDS NP_461969.1 16766354 1254576 complement(3212137..3215010) 1 NC_003197.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3215010 gcvP 1254576 gcvP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycine dehydrogenase NP_461969.1 3212137 R 99287 CDS NP_461970.1 16766355 1254577 complement(3215173..3215562) 1 NC_003197.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 3215562 gcvH 1254577 gcvH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycine cleavage system protein H NP_461970.1 3215173 R 99287 CDS NP_461971.1 16766356 1254578 complement(3215588..3216682) 1 NC_003197.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 3216682 gcvT 1254578 gcvT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycine cleavage system aminomethyltransferase T NP_461971.1 3215588 R 99287 CDS NP_461972.1 16766357 1254579 complement(3217137..3218339) 1 NC_003197.1 monooxygenase 3218339 visC 1254579 visC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 monooxygenase NP_461972.1 3217137 R 99287 CDS NP_461973.1 16766358 1254580 complement(3218465..3219643) 1 NC_003197.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 3219643 ubiH 1254580 ubiH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-octaprenyl-6-methoxyphenyl hydroxylase NP_461973.1 3218465 R 99287 CDS NP_461974.1 16766359 1254581 complement(3219640..3220956) 1 NC_003197.1 exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II 3220956 pepP 1254581 pepP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 proline aminopeptidase P II NP_461974.1 3219640 R 99287 CDS NP_461975.2 39546357 1254582 complement(3220982..3221560) 1 NC_003197.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 3221560 1254582 STM3059.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_461975.2 3220982 R 99287 CDS NP_461976.1 16766361 1254583 3221727..3222056 1 NC_003197.1 Z-ring-associated protein 3222056 ygfE 1254583 ygfE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Z-ring-associated protein NP_461976.1 3221727 D 99287 CDS NP_461977.1 16766362 1254584 3222350..3222898 1 NC_003197.1 ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; ligase 3222898 ygfA 1254584 ygfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ligase NP_461977.1 3222350 D 99287 CDS NP_461978.1 16766363 1254585 complement(3223279..3224511) 1 NC_003197.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3224511 serA 1254585 serA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-3-phosphoglycerate dehydrogenase NP_461978.1 3223279 R 99287 CDS NP_461979.1 16766364 1254586 complement(3224777..3225436) 1 NC_003197.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 3225436 rpiA 1254586 rpiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribose-5-phosphate isomerase A NP_461979.1 3224777 R 99287 CDS NP_461980.1 16766365 1254587 3225590..3226483 1 NC_003197.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3226483 iciA 1254587 iciA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome replication initiation inhibitor protein NP_461980.1 3225590 D 99287 CDS NP_461981.1 16766366 1254588 complement(3226749..3227495) 1 NC_003197.1 oxidative stress defense protein 3227495 yggE 1254588 yggE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidative stress defense protein NP_461981.1 3226749 R 99287 CDS NP_461982.1 16766367 1254589 complement(3227589..3228224) 1 NC_003197.1 Involved in the export of arginine; arginine exporter protein ArgO 3228224 argO 1254589 argO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arginine exporter protein ArgO NP_461982.1 3227589 R 99287 CDS NP_461983.1 16766368 1254590 complement(3228424..3229284) 1 NC_003197.1 participates in the regulation of osmotic pressure changes within the cel; mechanosensitive channel 3229284 yggB 1254590 yggB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mechanosensitive channel NP_461983.1 3228424 R 99287 CDS NP_461984.1 16766369 1254591 complement(3229511..3230590) 1 NC_003197.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 3230590 fba 1254591 fba Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fructose-bisphosphate aldolase NP_461984.1 3229511 R 99287 CDS NP_461985.1 16766370 1254592 complement(3230692..3231855) 1 NC_003197.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3231855 pgk 1254592 pgk Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoglycerate kinase NP_461985.1 3230692 R 99287 CDS NP_461986.1 16766371 1254593 complement(3231877..3232923) 1 NC_003197.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 3232923 epd 1254593 epd Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 erythrose 4-phosphate dehydrogenase NP_461986.1 3231877 R 99287 CDS NP_461987.1 16766372 1254594 3233297..3233722 1 NC_003197.1 DNA-binding protein 3233722 1254594 STM3071 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding protein NP_461987.1 3233297 D 99287 CDS NP_461988.1 16766373 1254595 3233748..3234326 1 NC_003197.1 inner membrane protein 3234326 1254595 STM3072 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_461988.1 3233748 D 99287 CDS NP_461989.1 16766374 1254596 3234327..3235034 1 NC_003197.1 CbiQ and related transporter; cobalt ABC transporter permease 3235034 1254596 STM3073 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalt ABC transporter permease NP_461989.1 3234327 D 99287 CDS NP_461990.1 16766375 1254597 3235022..3235699 1 NC_003197.1 cobalt ABC transporter ATP-binding protein 3235699 1254597 STM3074 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalt ABC transporter ATP-binding protein NP_461990.1 3235022 D 99287 CDS NP_461991.1 16766376 1254598 3235693..3236349 1 NC_003197.1 cobalt ABC transporter ATP-binding protein 3236349 1254598 STM3075 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cobalt ABC transporter ATP-binding protein NP_461991.1 3235693 D 99287 CDS NP_461992.1 16766377 1254599 complement(3236393..3238384) 1 NC_003197.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 3238384 tktA 1254599 tktA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transketolase NP_461992.1 3236393 R 99287 CDS NP_461993.1 16766378 1254600 3238660..3239418 1 NC_003197.1 contains chaperone function; Zn-dependent protease 3239418 yggG 1254600 yggG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Zn-dependent protease NP_461993.1 3238660 D 99287 CDS NP_461994.1 16766379 1254601 complement(3239519..3240439) 1 NC_003197.1 catalyzes the formation of putrescine from agmatine; agmatinase 3240439 speB 1254601 speB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 agmatinase NP_461994.1 3239519 R 99287 CDS NP_461995.2 39546358 1254602 complement(3240644..3241459) 1 NC_003197.1 hydrolase/acyltransferase 3241459 1254602 STM3079.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrolase/acyltransferase NP_461995.2 3240644 R 99287 CDS NP_461996.1 16766381 1254603 complement(3241814..3242287) 1 NC_003197.1 mannitol dehydrogenase 3242287 1254603 STM3080 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mannitol dehydrogenase NP_461996.1 3241814 R 99287 CDS NP_461997.1 16766382 1254604 complement(3242326..3243333) 1 NC_003197.1 malate/L-lactate dehydrogenase 3243333 1254604 STM3081 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 malate/L-lactate dehydrogenase NP_461997.1 3242326 R 99287 CDS NP_461998.1 16766383 1254605 complement(3243347..3244363) 1 NC_003197.1 zinc-binding dehydrogenase 3244363 1254605 STM3082 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 zinc-binding dehydrogenase NP_461998.1 3243347 R 99287 CDS NP_461999.1 16766384 1254606 complement(3244366..3245838) 1 NC_003197.1 mannitol dehydrogenase 3245838 1254606 STM3083 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mannitol dehydrogenase NP_461999.1 3244366 R 99287 CDS NP_462000.2 39546359 1254607 complement(3247098..3247847) 1 NC_003197.1 regulatory protein 3247847 1254607 STM3084.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_462000.2 3247098 R 99287 CDS NP_462001.1 16766386 1254608 complement(3248052..3248783) 1 NC_003197.1 outer membrane lipoprotein 3248783 1254608 STM3085 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_462001.1 3248052 R 99287 CDS NP_462002.1 16766387 1254609 complement(3248927..3250903) 1 NC_003197.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 3250903 speA 1254609 speA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arginine decarboxylase NP_462002.1 3248927 R 99287 CDS NP_462003.1 16766388 1254610 complement(3250912..3251043) 1 NC_003197.1 inner membrane protein 3251043 yqgB 1254610 yqgB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462003.1 3250912 R 99287 CDS NP_462005.1 16766390 1254612 complement(3251338..3251637) 1 NC_003197.1 inner membrane protein 3251637 yqgD 1254612 yqgD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462005.1 3251338 R 99287 CDS NP_462006.1 16766391 1254613 3251693..3252847 1 NC_003197.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3252847 metK 1254613 metK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 S-adenosylmethionine synthetase NP_462006.1 3251693 D 99287 CDS NP_462007.1 16766392 1254614 3253339..3254733 1 NC_003197.1 galactose/proton symporter 3254733 galP 1254614 galP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 galactose/proton symporter NP_462007.1 3253339 D 99287 CDS NP_462008.1 16766393 1254615 3254812..3255309 1 NC_003197.1 SprT family metalloprotease 3255309 sprT 1254615 sprT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SprT family metalloprotease NP_462008.1 3254812 D 99287 CDS NP_462009.1 16766394 1254616 3255404..3256111 1 NC_003197.1 DNA-specific endonuclease I 3256111 endA 1254616 endA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-specific endonuclease I NP_462009.1 3255404 D 99287 CDS NP_462010.2 161353586 1254617 3256188..3256919 1 NC_003197.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3256919 yggJ 1254617 yggJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 16S ribosomal RNA methyltransferase RsmE NP_462010.2 3256188 D 99287 CDS NP_462011.1 16766396 1254618 3256939..3257886 1 NC_003197.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3257886 gshB 1254618 gshB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione synthetase NP_462011.1 3256939 D 99287 CDS NP_462012.1 16766397 1254619 3258102..3258665 1 NC_003197.1 hypothetical protein 3258665 1254619 STM3096 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462012.1 3258102 D 99287 CDS NP_462013.1 16766398 1254620 3258665..3259081 1 NC_003197.1 Holliday junction resolvase 3259081 yqgF 1254620 yqgF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Holliday junction resolvase NP_462013.1 3258665 D 99287 CDS NP_462014.1 16766399 1254621 complement(3259128..3259814) 1 NC_003197.1 transcriptional regulator 3259814 1254621 STM3098 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_462014.1 3259128 R 99287 CDS NP_462015.1 16766400 1254622 complement(3259946..3260926) 1 NC_003197.1 twitching motility protein 3260926 yggR 1254622 yggR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 twitching motility protein NP_462015.1 3259946 R 99287 CDS NP_462016.1 16766401 1254623 3260944..3261648 1 NC_003197.1 enzyme with a TIM-barrel fold; hypothetical protein 3261648 1254623 STM3100 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462016.1 3260944 D 99287 CDS NP_462017.1 16766402 1254624 3261667..3262233 1 NC_003197.1 integral membrane protein 3262233 yggT 1254624 yggT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integral membrane protein NP_462017.1 3261667 D 99287 CDS NP_462018.1 16766403 1254625 3262230..3262520 1 NC_003197.1 hypothetical protein 3262520 1254625 STM3102 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462018.1 3262230 D 99287 CDS NP_462019.1 16766404 1254626 3262528..3263121 1 NC_003197.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; dITP/XTP pyrophosphatase 3263121 yggV 1254626 yggV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dITP/XTP pyrophosphatase NP_462019.1 3262528 D 99287 CDS NP_462020.1 16766405 1254627 3263114..3264250 1 NC_003197.1 oxidoreductase 3264250 yggW 1254627 yggW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_462020.1 3263114 D 99287 CDS NP_462021.1 16766406 1254628 complement(3264341..3265348) 1 NC_003197.1 periplasmic protein 3265348 yggM 1254628 yggM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462021.1 3264341 R 99287 CDS NP_462022.1 16766407 1254629 complement(3265481..3266527) 1 NC_003197.1 catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II 3266527 ansB 1254629 ansB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-asparaginase II NP_462022.1 3265481 R 99287 CDS NP_462023.1 16766408 1254630 complement(3266716..3267435) 1 NC_003197.1 periplasmic protein 3267435 yggN 1254630 yggN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462023.1 3266716 R 99287 CDS NP_462024.1 16766409 1254631 complement(3267485..3267811) 1 NC_003197.1 cytoplasmic protein 3267811 yggL 1254631 yggL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462024.1 3267485 R 99287 CDS NP_462025.1 16766410 1254632 complement(3267811..3268530) 1 NC_003197.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 3268530 trmB 1254632 trmB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA (guanine-N(7)-)-methyltransferase NP_462025.1 3267811 R 99287 CDS NP_462026.1 16766411 1254633 3268685..3269737 1 NC_003197.1 A/G-specific adenine glycosylase 3269737 mutY 1254633 mutY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 A/G-specific adenine glycosylase NP_462026.1 3268685 D 99287 CDS NP_462027.1 16766412 1254634 3269765..3270040 1 NC_003197.1 Fe(2+)-trafficking protein 3270040 yggX 1254634 yggX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Fe(2+)-trafficking protein NP_462027.1 3269765 D 99287 CDS NP_462028.1 16766413 1254635 3270153..3271238 1 NC_003197.1 Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; lytic murein transglycosylase C 3271238 mltC 1254635 mltC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lytic murein transglycosylase C NP_462028.1 3270153 D 99287 CDS NP_462029.1 16766414 1254636 3271455..3272711 1 NC_003197.1 nucleoside transport 3272711 nupG 1254636 nupG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleoside transport NP_462029.1 3271455 D 99287 CDS NP_462030.1 16766415 1254637 complement(3272773..3274908) 1 NC_003197.1 ornithine decarboxylase 3274908 speC 1254637 speC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ornithine decarboxylase NP_462030.1 3272773 R 99287 CDS NP_462031.1 16766416 1254638 3275333..3276040 1 NC_003197.1 inner membrane protein 3276040 yqgA 1254638 yqgA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462031.1 3275333 D 99287 CDS NP_462032.1 16766417 1254640 complement(3276380..3276814) 1 NC_003197.1 macrophage colonization factor 3276814 1254640 STM3117 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 macrophage colonization factor NP_462032.1 3276380 R 99287 CDS NP_462033.1 16766418 1254641 complement(3276825..3278150) 1 NC_003197.1 acetyl-CoA hydrolase 3278150 1254641 STM3118 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyl-CoA hydrolase NP_462033.1 3276825 R 99287 CDS NP_462034.1 16766419 1254642 complement(3278175..3278702) 1 NC_003197.1 monoamine oxidase 3278702 1254642 STM3119 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 monoamine oxidase NP_462034.1 3278175 R 99287 CDS NP_462035.1 16766420 1254643 complement(3278726..3279568) 1 NC_003197.1 citrate lyase subunit beta 3279568 1254643 STM3120 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 citrate lyase subunit beta NP_462035.1 3278726 R 99287 CDS NP_462036.1 16766421 1254644 3279660..3280538 1 NC_003197.1 transcriptional regulator; LysR family; LysR family transcriptional regulator 3280538 1254644 STM3121 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_462036.1 3279660 D 99287 CDS NP_462037.1 16766422 1254645 complement(3280586..3282325) 1 NC_003197.1 arylsulfatase 3282325 1254645 STM3122 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arylsulfatase NP_462037.1 3280586 R 99287 CDS NP_462038.1 16766423 1254646 complement(3282394..3283578) 1 NC_003197.1 arylsulfatase regulator 3283578 1254646 STM3123 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arylsulfatase regulator NP_462038.1 3282394 R 99287 CDS NP_462039.1 16766424 1254647 3284090..3284773 1 NC_003197.1 response regulator 3284773 1254647 STM3124 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 response regulator NP_462039.1 3284090 D 99287 CDS NP_462040.1 16766425 1254648 complement(3284877..3285434) 1 NC_003197.1 cytoplasmic protein 3285434 1254648 STM3125 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462040.1 3284877 R 99287 CDS NP_462041.1 16766426 1254649 complement(3285412..3286911) 1 NC_003197.1 amino acid transporter 3286911 1254649 STM3126 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amino acid transporter NP_462041.1 3285412 R 99287 CDS NP_462042.1 16766427 1254650 complement(3287120..3287494) 1 NC_003197.1 cytoplasmic protein 3287494 1254650 STM3127 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462042.1 3287120 R 99287 CDS NP_462043.1 16766428 1254651 complement(3287509..3288810) 1 NC_003197.1 oxidoreductase 3288810 1254651 STM3128 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_462043.1 3287509 R 99287 CDS NP_462044.1 16766429 1254652 3288972..3290456 1 NC_003197.1 NAD-dependent aldehyde dehydrogenase 3290456 1254652 STM3129 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NAD-dependent aldehyde dehydrogenase NP_462044.1 3288972 D 99287 CDS NP_462045.1 16766430 1254653 complement(3290592..3290972) 1 NC_003197.1 inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; anti-adapter protein IraD 3290972 iraD 1254653 iraD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anti-adapter protein IraD NP_462045.1 3290592 R 99287 CDS NP_462046.1 16766431 1254654 complement(3290972..3291457) 1 NC_003197.1 cytoplasmic protein 3291457 1254654 STM3131 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462046.1 3290972 R 99287 CDS NP_462047.1 16766432 1254655 complement(3292183..3293106) 1 NC_003197.1 xylanase/chitin deacetylase 3293106 1254655 STM3132 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 xylanase/chitin deacetylase NP_462047.1 3292183 R 99287 CDS NP_462048.1 16766433 1254656 complement(3293145..3294023) 1 NC_003197.1 amidohydrolase 3294023 1254656 STM3133 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amidohydrolase NP_462048.1 3293145 R 99287 CDS NP_462049.1 16766434 1254657 complement(3294419..3295723) 1 NC_003197.1 permease 3295723 1254657 STM3134 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_462049.1 3294419 R 99287 CDS NP_462050.1 16766435 1254658 3296128..3297312 1 NC_003197.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3297312 1254658 STM3135 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mannonate dehydratase NP_462050.1 3296128 D 99287 CDS NP_462051.1 16766436 1254659 3297423..3298895 1 NC_003197.1 D-mannonate oxidoreductase 3298895 1254659 STM3136 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-mannonate oxidoreductase NP_462051.1 3297423 D 99287 CDS NP_462052.1 16766437 1254660 3298907..3300319 1 NC_003197.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; uronate isomerase 3300319 1254660 STM3137 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 uronate isomerase NP_462052.1 3298907 D 99287 CDS NP_462053.1 16766438 1254661 complement(3300619..3301677) 1 NC_003197.1 methyl-accepting chemotaxis protein 3301677 1254661 STM3138 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methyl-accepting chemotaxis protein NP_462053.1 3300619 R 99287 CDS NP_462054.1 16766439 1254662 complement(3302347..3304203) 1 NC_003197.1 catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase 3304203 gsp 1254662 gsp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase NP_462054.1 3302347 R 99287 CDS NP_462055.1 16766440 1254663 3304430..3305296 1 NC_003197.1 YghU; B2989; one of eight glutathione transferase proteins from E. coli; glutathione S-transferase 3305296 yghU 1254663 yghU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione S-transferase NP_462055.1 3304430 D 99287 CDS NP_462056.1 16766441 1254664 complement(3305364..3306074) 1 NC_003197.1 molybdate ABC transporter substrate-binding protein 3306074 1254664 STM3141 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molybdate ABC transporter substrate-binding protein NP_462056.1 3305364 R 99287 CDS NP_462057.1 16766442 1254665 complement(3306074..3307126) 1 NC_003197.1 periplasmic ferrichrome-binding protein 3307126 1254665 STM3142 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic ferrichrome-binding protein NP_462057.1 3306074 R 99287 CDS NP_462058.1 16766443 1254666 complement(3307202..3307450) 1 NC_003197.1 hydrogenase 2 accessory protein HypG 3307450 hybG 1254666 hybG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase 2 accessory protein HypG NP_462058.1 3307202 R 99287 CDS NP_462059.1 16766444 1254667 complement(3307478..3307819) 1 NC_003197.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF 3307819 hybF 1254667 hybF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase nickel incorporation protein HybF NP_462059.1 3307478 R 99287 CDS NP_462060.1 16766445 1254668 complement(3307812..3308300) 1 NC_003197.1 hydrogenase 2-specific chaperone 3308300 hybE 1254668 hybE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase 2-specific chaperone NP_462060.1 3307812 R 99287 CDS NP_462061.1 16766446 1254669 complement(3308293..3308787) 1 NC_003197.1 protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase 3308787 hybD 1254669 hybD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase 2 maturation endopeptidase NP_462061.1 3308293 R 99287 CDS NP_462062.1 16766447 1254670 complement(3308787..3310490) 1 NC_003197.1 involved in hydrogen uptake; hydrogenase 2 large subunit 3310490 hybC 1254670 hybC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase 2 large subunit NP_462062.1 3308787 R 99287 CDS NP_462063.1 16766448 1254671 complement(3310487..3311665) 1 NC_003197.1 HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; hydrogenase 2 b cytochrome subunit 3311665 hybB 1254671 hybB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase 2 b cytochrome subunit NP_462063.1 3310487 R 99287 CDS NP_462064.1 16766449 1254672 complement(3311655..3312641) 1 NC_003197.1 Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 4Fe-4S ferredoxin-type subunit 3312641 hybA 1254672 hybA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase 2 4Fe-4S ferredoxin-type subunit NP_462064.1 3311655 R 99287 CDS NP_462065.1 16766450 1254673 complement(3312644..3313762) 1 NC_003197.1 involved in hydrogen uptake; hydrogenase 2 small subunit 3313762 hypO 1254673 hypO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrogenase 2 small subunit NP_462065.1 3312644 R 99287 CDS NP_462066.1 16766451 1254674 complement(3313952..3314239) 1 NC_003197.1 cytoplasmic protein 3314239 yghW 1254674 yghW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462066.1 3313952 R 99287 CDS NP_462067.1 16766452 1254675 complement(3314324..3315967) 1 NC_003197.1 methyl-accepting chemotaxis protein 3315967 1254675 STM3152 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methyl-accepting chemotaxis protein NP_462067.1 3314324 R 99287 CDS NP_462068.1 16766453 1254676 complement(3316274..3316768) 1 NC_003197.1 hypothetical protein 3316768 1254676 STM3153 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462068.1 3316274 R 99287 CDS NP_462069.1 16766454 1254677 complement(3317048..3317563) 1 NC_003197.1 ATP-dependent RNA helicase-like protein 3317563 1254677 STM3154 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent RNA helicase-like protein NP_462069.1 3317048 R 99287 CDS NP_462070.1 16766455 1254678 3317655..3318065 1 NC_003197.1 cytoplasmic protein 3318065 1254678 STM3155 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462070.1 3317655 D 99287 CDS NP_462071.1 16766456 1254679 3318052..3318456 1 NC_003197.1 cytoplasmic protein 3318456 1254679 STM3156 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462071.1 3318052 D 99287 CDS NP_462072.1 16766457 1254680 3318580..3319464 1 NC_003197.1 oxidoreductase 3319464 yghA 1254680 yghA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_462072.1 3318580 D 99287 CDS NP_462073.1 16766458 1254681 complement(3319577..3320002) 1 NC_003197.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 3320002 exbD 1254681 exbD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 biopolymer transport protein ExbD NP_462073.1 3319577 R 99287 CDS NP_462074.1 16766459 1254682 complement(3320009..3320743) 1 NC_003197.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbB 3320743 exbB 1254682 exbB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 biopolymer transport protein ExbB NP_462074.1 3320009 R 99287 CDS NP_462075.1 16766460 1254683 complement(3320736..3320885) 1 NC_003197.1 inner membrane protein 3320885 1254683 STM3160 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462075.1 3320736 R 99287 CDS NP_462076.1 16766461 1254684 3320995..3322182 1 NC_003197.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3322182 metC 1254684 metC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cystathionine beta-lyase NP_462076.1 3320995 D 99287 CDS NP_462077.1 16766462 1254685 3322322..3322981 1 NC_003197.1 inner membrane protein 3322981 yghB 1254685 yghB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462077.1 3322322 D 99287 CDS NP_462078.1 16766463 1254686 complement(3323045..3323962) 1 NC_003197.1 AraC/XylS family transcriptional regulator 3323962 yqhC 1254686 yqhC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AraC/XylS family transcriptional regulator NP_462078.1 3323045 R 99287 CDS NP_462079.1 16766464 1254687 3324137..3325300 1 NC_003197.1 similar to Escherichia coli oxidoreductase (AAC76047.1); alcohol dehydrogenase 3325300 yqhD 1254687 yqhD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alcohol dehydrogenase NP_462079.1 3324137 D 99287 CDS NP_462080.1 16766465 1254688 3325406..3326233 1 NC_003197.1 methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; 2,5-diketo-D-gluconate reductase A 3326233 dkgA 1254688 dkgA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2,5-diketo-D-gluconate reductase A NP_462080.1 3325406 D 99287 CDS NP_462081.2 39546360 1254689 3326420..3327883 1 NC_003197.1 cation transporter 3327883 1254689 STM3166.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cation transporter NP_462081.2 3326420 D 99287 CDS NP_462082.1 16766467 1254690 3327928..3328383 1 NC_003197.1 Ap4A; diadenosine tetraphosphate hydrolase 3328383 1254690 STM3167 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diadenosine tetraphosphate hydrolase NP_462082.1 3327928 D 99287 CDS YP_006892406.1 409994438 13865710 complement(3328541..3328735) 1 NC_003197.1 hypothetical protein 3328735 13865710 STM05675 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892406.1 3328541 R 99287 CDS NP_462083.1 16766468 1254691 complement(3328938..3331109) 1 NC_003197.1 FeS oxidoreductase family 2; hypothetical protein 3331109 1254691 STM3168 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462083.1 3328938 R 99287 CDS NP_462084.1 16766469 1254692 3331597..3332580 1 NC_003197.1 periplasmic dicarboxylate-binding protein 3332580 1254692 STM3169 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic dicarboxylate-binding protein NP_462084.1 3331597 D 99287 CDS NP_462085.1 16766470 1254693 3332622..3333104 1 NC_003197.1 inner membrane protein 3333104 1254693 STM3170 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462085.1 3332622 D 99287 CDS NP_462086.1 16766471 1254694 3333115..3334422 1 NC_003197.1 transporter 3334422 ygiK 1254694 ygiK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transporter NP_462086.1 3333115 D 99287 CDS NP_462087.1 16766472 1254695 complement(3334467..3335879) 1 NC_003197.1 SufI protein (SW:SUFI_SALTY); periplasmic protein; cell division protein FtsP 3335879 ftsP 1254695 ftsP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division protein FtsP NP_462087.1 3334467 R 99287 CDS NP_462088.1 16766473 1254696 complement(3335953..3336690) 1 NC_003197.1 1-acyl-SN-glycerol-3-phosphate acyltransferase (SW:PLSC_SALTY); 1-acyl-sn-glycerol-3-phosphate acyltransferase 3336690 plsC 1254696 plsC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1-acyl-sn-glycerol-3-phosphate acyltransferase NP_462088.1 3335953 R 99287 CDS NP_462089.1 16766474 1254697 complement(3336947..3339205) 1 NC_003197.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3339205 parC 1254697 parC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA topoisomerase IV subunit A NP_462089.1 3336947 R 99287 CDS NP_462090.1 16766475 1254698 complement(3339316..3340182) 1 NC_003197.1 AraC family; helix-turn-helix; regulatory protein 3340182 1254698 STM3175 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_462090.1 3339316 R 99287 CDS NP_462091.1 16766476 1254699 complement(3340254..3340646) 1 NC_003197.1 outer membrane protein 3340646 ygiW 1254699 ygiW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_462091.1 3340254 R 99287 CDS NP_462092.1 16766477 1254700 3340798..3341457 1 NC_003197.1 response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; transcriptional regulator QseB 3341457 ygiX 1254700 ygiX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator QseB NP_462092.1 3340798 D 99287 CDS NP_462093.1 16766478 1254701 3341454..3342803 1 NC_003197.1 sensor protein QseC 3342803 ygiY 1254701 ygiY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensor protein QseC NP_462093.1 3341454 D 99287 CDS NP_462094.1 16766479 1254702 3342910..3343491 1 NC_003197.1 NADPH-specific quinone oxidoreductase 3343491 mdaB 1254702 mdaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NADPH-specific quinone oxidoreductase NP_462094.1 3342910 D 99287 CDS NP_462095.1 16766480 1254703 3343523..3343837 1 NC_003197.1 cytoplasmic protein 3343837 ygiN 1254703 ygiN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462095.1 3343523 D 99287 CDS NP_462096.1 16766481 1254704 complement(3343962..3345854) 1 NC_003197.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3345854 parE 1254704 parE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA topoisomerase IV subunit B NP_462096.1 3343962 R 99287 CDS NP_462097.1 16766482 1254705 complement(3345882..3346463) 1 NC_003197.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase 3346463 yqiA 1254705 yqiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 esterase NP_462097.1 3345882 R 99287 CDS NP_462098.1 16766483 1254706 complement(3346463..3347290) 1 NC_003197.1 cyclic 3',5'-adenosine monophosphate phosphodiesterase 3347290 icc 1254706 icc Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cyclic 3',5'-adenosine monophosphate phosphodiesterase NP_462098.1 3346463 R 99287 CDS NP_462099.1 16766484 1254707 complement(3347315..3347737) 1 NC_003197.1 cytoplasmic protein 3347737 yqiB 1254707 yqiB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462099.1 3347315 R 99287 CDS NP_462100.1 16766485 1254708 complement(3347734..3348366) 1 NC_003197.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase NudF 3348366 nudF 1254708 nudF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ADP-ribose pyrophosphatase NudF NP_462100.1 3347734 R 99287 CDS NP_462101.2 161353585 1254709 3348573..3350042 1 NC_003197.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3350042 tolC 1254709 tolC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane channel protein NP_462101.2 3348573 D 99287 CDS NP_462102.1 16766487 1254710 3350255..3350926 1 NC_003197.1 hypothetical protein 3350926 1254710 STM3187 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462102.1 3350255 D 99287 CDS NP_462103.1 16766488 1254711 3350932..3352095 1 NC_003197.1 glutathionylspermidine synthase 3352095 ygiC 1254711 ygiC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathionylspermidine synthase NP_462103.1 3350932 D 99287 CDS NP_462104.1 16766489 1254712 complement(3352157..3352987) 1 NC_003197.1 seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; cytoplasmic protein 3352987 ygiD 1254712 ygiD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462104.1 3352157 R 99287 CDS NP_462105.1 16766490 1254713 3353086..3353859 1 NC_003197.1 zinc transporter ZupT 3353859 ygiE 1254713 ygiE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 zinc transporter ZupT NP_462105.1 3353086 D 99287 CDS YP_006892407.1 409994439 13865724 complement(3353926..3354102) 1 NC_003197.1 hypothetical protein 3354102 13865724 STM05680 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892407.1 3353926 R 99287 CDS NP_462108.1 16766493 1254716 3356317..3356988 1 NC_003197.1 thiol-disulfide isomerase and thioredoxin; disulfide bond formation protein DsbL 3356988 1254716 STM3193 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 disulfide bond formation protein DsbL NP_462108.1 3356317 D 99287 CDS NP_462109.1 16766494 1254717 3357003..3357680 1 NC_003197.1 protein-disulfide oxidoreductase DsbI 3357680 1254717 STM3194 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protein-disulfide oxidoreductase DsbI NP_462109.1 3357003 D 99287 CDS NP_462110.1 16766495 1254718 complement(3357851..3358504) 1 NC_003197.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3358504 ribB 1254718 ribB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3,4-dihydroxy-2-butanone 4-phosphate synthase NP_462110.1 3357851 R 99287 CDS NP_462111.2 39546361 1254719 3358941..3359240 1 NC_003197.1 hypothetical protein 3359240 1254719 STM3196.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462111.2 3358941 D 99287 CDS NP_462112.1 16766497 1254720 complement(3359314..3359523) 1 NC_003197.1 Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS 3359523 glgS 1254720 glgS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycogen synthesis protein GlgS NP_462112.1 3359314 R 99287 CDS NP_462113.1 16766498 1254721 3359781..3360401 1 NC_003197.1 inner membrane protein 3360401 1254721 STM3198 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462113.1 3359781 D 99287 CDS NP_462114.1 16766499 1254722 3360420..3362099 1 NC_003197.1 membrane protein 3362099 yqiK 1254722 yqiK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane protein NP_462114.1 3360420 D 99287 CDS NP_462115.1 16766500 1254723 complement(3362559..3363992) 1 NC_003197.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3363992 rfaE 1254723 rfaE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase NP_462115.1 3362559 R 99287 CDS NP_462116.1 16766501 1254724 complement(3364040..3366883) 1 NC_003197.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3366883 glnE 1254724 glnE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase NP_462116.1 3364040 R 99287 CDS NP_462117.1 16766502 1254725 complement(3367001..3368302) 1 NC_003197.1 cytoplasmic protein 3368302 ygiF 1254725 ygiF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462117.1 3367001 R 99287 CDS NP_462118.1 16766503 1254726 3368544..3369158 1 NC_003197.1 contains SH3 domain protein; SH3 domain-containing protein 3369158 ygiM 1254726 ygiM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SH3 domain-containing protein NP_462118.1 3368544 D 99287 CDS NP_462119.1 16766504 1254727 3369221..3370462 1 NC_003197.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3370462 cca 1254727 cca Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase NP_462119.1 3369221 D 99287 CDS NP_462120.2 308065956 1254728 complement(3370567..3371388) 1 NC_003197.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl-diphosphatase 3371388 uppP 1254728 uppP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 undecaprenyl-diphosphatase NP_462120.2 3370567 R 99287 CDS NP_462121.2 308065955 1254729 complement(3371486..3371845) 1 NC_003197.1 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase 3371845 folB 1254729 folB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase NP_462121.2 3371486 R 99287 CDS NP_462122.1 16766507 1254730 3371952..3372563 1 NC_003197.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase 3372563 ygiH 1254730 ygiH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerol-3-phosphate acyltransferase NP_462122.1 3371952 D 99287 CDS NP_462123.1 16766508 1254731 complement(3372814..3373827) 1 NC_003197.1 catalyzes the formation of a threonylcarbamoyl group at position 37 in tRNAs that read codons beginning with adenine; tRNA N6-adenosine threonylcarbamoyltransferase 3373827 gcp 1254731 gcp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA N6-adenosine threonylcarbamoyltransferase NP_462123.1 3372814 R 99287 CDS NP_462124.1 16766509 1254732 3374055..3374270 1 NC_003197.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3374270 rpsU 1254732 rpsU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S21 NP_462124.1 3374055 D 99287 CDS NP_462125.1 16766510 1254733 3374506..3376251 1 NC_003197.1 synthesizes RNA primers at the replication forks; DNA primase 3376251 dnaG 1254733 dnaG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA primase NP_462125.1 3374506 D 99287 CDS NP_462126.2 39546362 1254734 3376401..3378248 1 NC_003197.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3378248 rpoD 1254734 rpoD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNA polymerase sigma factor RpoD NP_462126.2 3376401 D 99287 CDS NP_462127.1 16766512 1254735 complement(3378372..3378878) 1 NC_003197.1 G/U mismatch-specific DNA glycosylase 3378878 mug 1254735 mug Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 G/U mismatch-specific DNA glycosylase NP_462127.1 3378372 R 99287 CDS NP_462128.1 16766513 1254737 complement(3379159..3379926) 1 NC_003197.1 transporter 3379926 yqjH 1254737 yqjH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transporter NP_462128.1 3379159 R 99287 CDS NP_462129.1 16766514 1254738 3380158..3380805 1 NC_003197.1 transcriptional regulator 3380805 yqjI 1254738 yqjI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_462129.1 3380158 D 99287 CDS NP_462130.1 16766515 1254739 complement(3380802..3382367) 1 NC_003197.1 methyl-accepting chemotaxis protein 3382367 1254739 STM3216 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methyl-accepting chemotaxis protein NP_462130.1 3380802 R 99287 CDS NP_462131.1 16766516 1254740 complement(3382755..3384275) 1 NC_003197.1 aerotaxis sensor receptor 3384275 aer 1254740 aer Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aerotaxis sensor receptor NP_462131.1 3382755 R 99287 CDS NP_462132.2 161353584 1254741 3384678..3386084 1 NC_003197.1 catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine aminotransferase 3386084 oat 1254741 oat Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putrescine aminotransferase NP_462132.2 3384678 D 99287 CDS NP_462133.1 16766518 1254742 3386255..3388273 1 NC_003197.1 2,4-dienoyl-CoA reductase 3388273 fadH 1254742 fadH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2,4-dienoyl-CoA reductase NP_462133.1 3386255 D 99287 CDS NP_462134.1 16766519 1254743 complement(3388354..3389490) 1 NC_003197.1 rRNA large subunit methyltransferase G 3389490 1254743 STM3220 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA large subunit methyltransferase G NP_462134.1 3388354 R 99287 CDS NP_462135.1 16766520 1254744 3389576..3390073 1 NC_003197.1 metal-dependent hydrolase 3390073 ygjP 1254744 ygjP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 metal-dependent hydrolase NP_462135.1 3389576 D 99287 CDS NP_462136.1 16766521 1254745 3390225..3390917 1 NC_003197.1 integral membrane protein 3390917 ygjQ 1254745 ygjQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integral membrane protein NP_462136.1 3390225 D 99287 CDS NP_462137.1 16766522 1254746 3391006..3392004 1 NC_003197.1 dehydrogenase 3392004 ygjR 1254746 ygjR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dehydrogenase NP_462137.1 3391006 D 99287 CDS NP_462138.1 16766523 1254747 3392277..3393245 1 NC_003197.1 inner membrane protein 3393245 ygjT 1254747 ygjT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462138.1 3392277 D 99287 CDS NP_462139.1 16766524 1254748 3393500..3394744 1 NC_003197.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3394744 ygjU 1254748 ygjU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 serine/threonine transporter SstT NP_462139.1 3393500 D 99287 CDS NP_462140.1 16766525 1254749 3395194..3395856 1 NC_003197.1 DedA family; DedA family membrane protein 3395856 yqjA 1254749 yqjA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DedA family membrane protein NP_462140.1 3395194 D 99287 CDS NP_462141.1 16766526 1254750 3395860..3396243 1 NC_003197.1 modulator protein MzrA 3396243 yqjB 1254750 yqjB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 modulator protein MzrA NP_462141.1 3395860 D 99287 CDS NP_462142.1 16766527 1254751 3396388..3396756 1 NC_003197.1 periplasmic protein 3396756 yqjC 1254751 yqjC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462142.1 3396388 D 99287 CDS NP_462143.1 16766528 1254752 3396798..3397103 1 NC_003197.1 inner membrane protein 3397103 yqjD 1254752 yqjD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462143.1 3396798 D 99287 CDS NP_462144.1 16766529 1254753 3397106..3397504 1 NC_003197.1 inner membrane protein 3397504 yqjE 1254753 yqjE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462144.1 3397106 D 99287 CDS NP_462145.1 16766530 1254754 3397501..3397800 1 NC_003197.1 inner membrane protein 3397800 yqjK 1254754 yqjK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462145.1 3397501 D 99287 CDS NP_462146.1 16766531 1254755 3397945..3398430 1 NC_003197.1 hypothetical protein 3398430 1254755 STM3232 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462146.1 3397945 D 99287 CDS NP_462147.1 16766532 1254756 3398498..3399484 1 NC_003197.1 glutathione S-transferase 3399484 yqjG 1254756 yqjG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione S-transferase NP_462147.1 3398498 D 99287 CDS NP_462148.1 16766533 1254757 3399608..3399973 1 NC_003197.1 inner membrane protein 3399973 yhaH 1254757 yhaH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462148.1 3399608 D 99287 CDS NP_462149.1 16766534 1254758 complement(3400012..3400908) 1 NC_003197.1 LysR family transcriptional regulator 3400908 yhaJ 1254758 yhaJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_462149.1 3400012 R 99287 CDS NP_462150.1 16766535 1254759 3401013..3401714 1 NC_003197.1 cytoplasmic protein 3401714 yhaK 1254759 yhaK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462150.1 3401013 D 99287 CDS NP_462151.1 16766536 1254760 3401738..3401902 1 NC_003197.1 cytoplasmic protein 3401902 yhaL 1254760 yhaL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462151.1 3401738 D 99287 CDS NP_462152.1 16766537 1254761 complement(3402015..3403325) 1 NC_003197.1 hypothetical protein 3403325 1254761 STM3238 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462152.1 3402015 R 99287 CDS NP_462153.1 16766538 1254762 complement(3403351..3404682) 1 NC_003197.1 HAAAP family transport protein 3404682 yhaO 1254762 yhaO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HAAAP family transport protein NP_462153.1 3403351 R 99287 CDS NP_462154.1 16766539 1254763 complement(3404998..3406362) 1 NC_003197.1 L-serine deaminase 3406362 tdcG 1254763 tdcG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-serine deaminase NP_462154.1 3404998 R 99287 CDS NP_462155.1 16766540 1254764 complement(3406432..3408726) 1 NC_003197.1 pyruvate formate-lyase 4/2-ketobutyrate formate-lyase 3408726 tdcE 1254764 tdcE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate formate-lyase 4/2-ketobutyrate formate-lyase NP_462155.1 3406432 R 99287 CDS NP_462156.1 16766541 1254765 complement(3408760..3409968) 1 NC_003197.1 catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase 3409968 tdcD 1254765 tdcD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 propionate/acetate kinase NP_462156.1 3408760 R 99287 CDS NP_462157.1 16766542 1254766 complement(3410034..3411365) 1 NC_003197.1 involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC 3411365 tdcC 1254766 tdcC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 threonine/serine transporter TdcC NP_462157.1 3410034 R 99287 CDS NP_462158.1 16766543 1254767 complement(3411386..3412375) 1 NC_003197.1 catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase TdcB 3412375 tdcB 1254767 tdcB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 threonine dehydratase TdcB NP_462158.1 3411386 R 99287 CDS NP_462159.1 16766544 1254768 complement(3412473..3413411) 1 NC_003197.1 regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA 3413411 tdcA 1254768 tdcA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional activator TdcA NP_462159.1 3412473 R 99287 CDS NP_462160.1 16766545 1254770 complement(3415210..3416355) 1 NC_003197.1 glycerate kinase 3416355 garK 1254770 garK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerate kinase NP_462160.1 3415210 R 99287 CDS NP_462161.1 16766546 1254771 complement(3416453..3417343) 1 NC_003197.1 catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase 3417343 garR 1254771 garR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tartronate semialdehyde reductase NP_462161.1 3416453 R 99287 CDS NP_462162.1 16766547 1254772 complement(3417369..3418139) 1 NC_003197.1 cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; 5-keto-4-deoxy-D-glucarate aldolase 3418139 garL 1254772 garL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 5-keto-4-deoxy-D-glucarate aldolase NP_462162.1 3417369 R 99287 CDS NP_462163.1 16766548 1254773 3418669..3420240 1 NC_003197.1 galactarate dehydratase 3420240 garD 1254773 garD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 galactarate dehydratase NP_462163.1 3418669 D 99287 CDS NP_462164.1 16766549 1254774 complement(3420480..3421427) 1 NC_003197.1 ribokinase family sugar kinase 3421427 1254774 STM3251 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribokinase family sugar kinase NP_462164.1 3420480 R 99287 CDS NP_462165.1 16766550 1254775 complement(3421438..3422271) 1 NC_003197.1 AGA operon transcriptional repressor 3422271 agaR 1254775 agaR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AGA operon transcriptional repressor NP_462165.1 3421438 R 99287 CDS NP_462166.1 16766551 1254776 3422605..3423459 1 NC_003197.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; D-tagatose-1,6-bisphosphate aldolase subunit GatY 3423459 gatY 1254776 gatY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-tagatose-1,6-bisphosphate aldolase subunit GatY NP_462166.1 3422605 D 99287 CDS NP_462167.1 16766552 1254777 3423470..3424384 1 NC_003197.1 fructose-1-phosphate kinase 3424384 1254777 STM3254 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fructose-1-phosphate kinase NP_462167.1 3423470 D 99287 CDS NP_462168.1 16766553 1254778 3424411..3425838 1 NC_003197.1 PTS system fructose-specific transporter subunit IIB 3425838 1254778 STM3255 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system fructose-specific transporter subunit IIB NP_462168.1 3424411 D 99287 CDS NP_462169.1 16766554 1254779 3425825..3426631 1 NC_003197.1 PTS system mannitol/fructose-specific transporter subunit IIA/phosphocarrier protein FPr 3426631 1254779 STM3256 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannitol/fructose-specific transporter subunit IIA/phosphocarrier protein FPr NP_462169.1 3425825 D 99287 CDS NP_462170.1 16766555 1254780 3426829..3428100 1 NC_003197.1 D-tagatose-1,6-bisphosphate aldolase subunit GatZ 3428100 gatZ 1254780 gatZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-tagatose-1,6-bisphosphate aldolase subunit GatZ NP_462170.1 3426829 D 99287 CDS NP_462171.1 16766556 1254781 3428115..3428579 1 NC_003197.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIA 3428579 1254781 STM3258 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system galactitol-specific transporter subunit IIA NP_462171.1 3428115 D 99287 CDS NP_462172.1 16766557 1254782 3428610..3428894 1 NC_003197.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIB 3428894 1254782 STM3259 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system galactitol-specific transporter subunit IIB NP_462172.1 3428610 D 99287 CDS NP_462173.1 16766558 1254783 3428898..3430271 1 NC_003197.1 PTS system galactitol-specific transporter subunit IIC 3430271 1254783 STM3260 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system galactitol-specific transporter subunit IIC NP_462173.1 3428898 D 99287 CDS NP_462174.1 16766559 1254784 3430315..3431358 1 NC_003197.1 Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 3431358 1254784 STM3261 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 galactitol-1-phosphate dehydrogenase NP_462174.1 3430315 D 99287 CDS NP_462175.1 16766560 1254785 3431469..3432242 1 NC_003197.1 galactitol utilization operon transcriptional repressor 3432242 1254785 STM3262 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 galactitol utilization operon transcriptional repressor NP_462175.1 3431469 D 99287 CDS NP_462176.1 16766561 1254786 complement(3432400..3433263) 1 NC_003197.1 rRNA small subunit methyltransferase I 3433263 yraL 1254786 yraL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA small subunit methyltransferase I NP_462176.1 3432400 R 99287 CDS NP_462177.1 16766562 1254787 3433327..3435369 1 NC_003197.1 hypothetical protein 3435369 1254787 STM3264 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462177.1 3433327 D 99287 CDS NP_462178.1 16766563 1254788 3435327..3435722 1 NC_003197.1 hypothetical protein 3435722 1254788 STM3265 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462178.1 3435327 D 99287 CDS NP_462179.1 16766564 1254789 3435744..3436334 1 NC_003197.1 Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 3436334 yraO 1254789 yraO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DnaA initiator-associating protein DiaA NP_462179.1 3435744 D 99287 CDS NP_462180.1 16766565 1254790 3436344..3436919 1 NC_003197.1 periplasmic protein 3436919 yraP 1254790 yraP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462180.1 3436344 D 99287 CDS NP_462181.1 16766566 1254791 complement(3436986..3437654) 1 NC_003197.1 nucleoside-diphosphate-sugar epimerase 3437654 yraR 1254791 yraR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleoside-diphosphate-sugar epimerase NP_462181.1 3436986 R 99287 CDS NP_462182.1 16766567 1254792 3437752..3438270 1 NC_003197.1 intracellular proteinase 3438270 yhbO 1254792 yhbO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 intracellular proteinase NP_462182.1 3437752 D 99287 CDS NP_462183.1 16766568 1254793 complement(3438250..3438693) 1 NC_003197.1 hypothetical protein 3438693 1254793 STM3270 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462183.1 3438250 R 99287 CDS NP_462184.2 308065954 1254794 3438746..3439048 1 NC_003197.1 hypothetical protein 3439048 1254794 STM3271 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462184.2 3438746 D 99287 CDS NP_462185.1 16766570 1254795 complement(3439035..3439538) 1 NC_003197.1 ABC superfamily membrane protein; ABC superfamily transport protein 3439538 yhbS 1254795 yhbS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC superfamily transport protein NP_462185.1 3439035 R 99287 CDS NP_462186.1 16766571 1254796 complement(3439532..3440056) 1 NC_003197.1 lipid carrier protein 3440056 yhbT 1254796 yhbT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipid carrier protein NP_462186.1 3439532 R 99287 CDS NP_462187.1 16766572 1254797 3440273..3441268 1 NC_003197.1 protease 3441268 yhbU 1254797 yhbU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protease NP_462187.1 3440273 D 99287 CDS NP_462188.2 39546363 1254798 3441277..3442155 1 NC_003197.1 protease 3442155 yhbV 1254798 yhbV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protease NP_462188.2 3441277 D 99287 CDS NP_462189.1 16766574 1254799 3442333..3443340 1 NC_003197.1 alkanal monooxygenase 3443340 yhbW 1254799 yhbW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alkanal monooxygenase NP_462189.1 3442333 D 99287 CDS NP_462190.1 16766575 1254800 complement(3443318..3444037) 1 NC_003197.1 inner membrane protein 3444037 1254800 STM3277 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462190.1 3443318 R 99287 CDS NP_462191.1 16766576 1254801 3444196..3444726 1 NC_003197.1 cytoplasmic protein 3444726 1254801 STM3278 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462191.1 3444196 D 99287 CDS NP_462192.1 16766577 1254802 complement(3444787..3446031) 1 NC_003197.1 tryptophan transporter of high affinity; HAAAP family tryptophan-specific transport protein 3446031 mtr 1254802 mtr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HAAAP family tryptophan-specific transport protein NP_462192.1 3444787 R 99287 CDS NP_462193.2 39546364 1254803 complement(3446185..3448074) 1 NC_003197.1 participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD 3448074 deaD 1254803 deaD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent RNA helicase DeaD NP_462193.2 3446185 R 99287 CDS NP_462194.1 16766579 1254804 complement(3448253..3449137) 1 NC_003197.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 3449137 nlpI 1254804 nlpI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein NlpI NP_462194.1 3448253 R 99287 CDS NP_462195.1 16766580 1254805 complement(3449247..3451382) 1 NC_003197.1 polyribonucleotide nucleotidyltransferas 3451382 pnp 1254805 pnp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 polyribonucleotide nucleotidyltransferas NP_462195.1 3449247 R 99287 CDS NP_462196.1 16766581 1254806 complement(3451624..3451893) 1 NC_003197.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 3451893 rpsO 1254806 rpsO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S15 NP_462196.1 3451624 R 99287 CDS NP_462197.1 16766582 1254807 complement(3452044..3452988) 1 NC_003197.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 3452988 truB 1254807 truB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA pseudouridine synthase B NP_462197.1 3452044 R 99287 CDS NP_462198.1 16766583 1254808 complement(3452988..3453389) 1 NC_003197.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 3453389 rbfA 1254808 rbfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribosome-binding factor A NP_462198.1 3452988 R 99287 CDS NP_462199.1 16766584 1254809 complement(3453610..3456288) 1 NC_003197.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 3456288 infB 1254809 infB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 translation initiation factor IF-2 NP_462199.1 3453610 R 99287 CDS NP_462200.1 16766585 1254810 complement(3456313..3457815) 1 NC_003197.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription termination/antitermination protein NusA 3457815 nusA 1254810 nusA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcription termination/antitermination protein NusA NP_462200.1 3456313 R 99287 CDS NP_462201.2 161353583 1254811 complement(3457843..3458295) 1 NC_003197.1 ribosome maturation factor RimP 3458295 rimP 1254811 rimP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribosome maturation factor RimP NP_462201.2 3457843 R 99287 CDS NP_462202.2 39546365 1254813 3458923..3460266 1 NC_003197.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3460266 argG 1254813 argG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 argininosuccinate synthase NP_462202.2 3458923 D 99287 CDS NP_462203.1 16766588 1254814 complement(3460352..3461416) 1 NC_003197.1 cytoplasmic protein 3461416 1254814 STM3291 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462203.1 3460352 R 99287 CDS NP_462204.1 16766589 1254816 complement(3461852..3462184) 1 NC_003197.1 preprotein translocase IISp family protein 3462184 secG 1254816 secG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 preprotein translocase IISp family protein NP_462204.1 3461852 R 99287 CDS NP_462205.1 16766590 1254817 complement(3462407..3463744) 1 NC_003197.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 3463744 glmM 1254817 glmM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoglucosamine mutase NP_462205.1 3462407 R 99287 CDS NP_462206.1 16766591 1254818 complement(3463737..3464585) 1 NC_003197.1 catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate; 7,8-dihydropteroate synthase 3464585 folP 1254818 folP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 7,8-dihydropteroate synthase NP_462206.1 3463737 R 99287 CDS NP_462207.1 16766592 1254819 complement(3464690..3466624) 1 NC_003197.1 inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease 3466624 hflB 1254819 hflB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent metalloprotease NP_462207.1 3464690 R 99287 CDS NP_462208.1 16766593 1254820 complement(3466728..3467354) 1 NC_003197.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; rRNA large subunit methyltransferase E 3467354 rlmE 1254820 rlmE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA large subunit methyltransferase E NP_462208.1 3466728 R 99287 CDS NP_462209.2 39546366 1254821 3467481..3467774 1 NC_003197.1 RNA binding protein found associated to pre-50S subunit of the ribosome; role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 3467774 yhbY 1254821 yhbY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNA-binding protein YhbY NP_462209.2 3467481 D 99287 CDS NP_462210.1 16766595 1254822 complement(3467930..3468406) 1 NC_003197.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 3468406 greA 1254822 greA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcription elongation factor GreA NP_462210.1 3467930 R 99287 CDS NP_462211.1 16766596 1254823 3468654..3470087 1 NC_003197.1 penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 3470087 dacB 1254823 dacB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-alanyl-D-alanine carboxypeptidase NP_462211.1 3468654 D 99287 CDS NP_462212.1 16766597 1254824 complement(3470219..3471391) 1 NC_003197.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 3471391 obgE 1254824 obgE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GTPase ObgE NP_462212.1 3470219 R 99287 CDS NP_462213.1 16766598 1254826 complement(3472501..3472758) 1 NC_003197.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 3472758 rpmA 1254826 rpmA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L27 NP_462213.1 3472501 R 99287 CDS NP_462214.1 16766599 1254827 complement(3472778..3473089) 1 NC_003197.1 50S ribosomal protein L21 3473089 rplU 1254827 rplU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L21 NP_462214.1 3472778 R 99287 CDS NP_462215.1 16766600 1254828 3473347..3474318 1 NC_003197.1 octaprenyl diphosphate synthase 3474318 ispB 1254828 ispB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 octaprenyl diphosphate synthase NP_462215.1 3473347 D 99287 CDS NP_462216.1 16766601 1254829 3474550..3474837 1 NC_003197.1 activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 3474837 nlp 1254829 nlp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional regulator Nlp NP_462216.1 3474550 D 99287 CDS NP_462217.1 16766602 1254830 complement(3474895..3476154) 1 NC_003197.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3476154 murA 1254830 murA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-N-acetylglucosamine 1-carboxyvinyltransferase NP_462217.1 3474895 R 99287 CDS NP_462218.1 16766603 1254831 complement(3476208..3476501) 1 NC_003197.1 BolA family; BolA family transcriptional regulator 3476501 yrbA 1254831 yrbA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 BolA family transcriptional regulator NP_462218.1 3476208 R 99287 CDS NP_462219.1 16766604 1254832 complement(3476650..3476946) 1 NC_003197.1 STAS domain; STAS domain-containing protein 3476946 yrbB 1254832 yrbB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 STAS domain-containing protein NP_462219.1 3476650 R 99287 CDS NP_462220.1 16766605 1254833 complement(3476946..3477581) 1 NC_003197.1 ABC superfamily; ABC transporter substrate-binding protein 3477581 yrbC 1254833 yrbC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter substrate-binding protein NP_462220.1 3476946 R 99287 CDS NP_462221.1 16766606 1254834 complement(3477600..3478151) 1 NC_003197.1 ABC superfamily binding protein; ABC transporter substrate-binding protein 3478151 yrbD 1254834 yrbD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter substrate-binding protein NP_462221.1 3477600 R 99287 CDS NP_462222.1 16766607 1254835 complement(3478156..3478938) 1 NC_003197.1 ABC superfamily membrane protein; ABC transporter permease 3478938 yrbE 1254835 yrbE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter permease NP_462222.1 3478156 R 99287 CDS NP_462223.1 16766608 1254836 complement(3478946..3479758) 1 NC_003197.1 ABC transporter ATP-binding protein 3479758 yrbF 1254836 yrbF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter ATP-binding protein NP_462223.1 3478946 R 99287 CDS NP_462224.1 16766609 1254837 3479971..3480948 1 NC_003197.1 YrbG; inner membrane protein involved in cell envelope integrity; sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; calcium/sodium:proton antiporter 3480948 yrbG 1254837 yrbG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 calcium/sodium:proton antiporter NP_462224.1 3479971 D 99287 CDS NP_462225.1 16766610 1254838 3480962..3481948 1 NC_003197.1 arabinose 5-phosphate isomerase KdsD 3481948 kdsD 1254838 kdsD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arabinose 5-phosphate isomerase KdsD NP_462225.1 3480962 D 99287 CDS NP_462226.1 16766611 1254839 3481969..3482535 1 NC_003197.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC 3482535 kdsC 1254839 kdsC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC NP_462226.1 3481969 D 99287 CDS NP_462227.1 16766612 1254840 3482532..3483107 1 NC_003197.1 lipopolysaccharide export system protein LptC 3483107 lptC 1254840 lptC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipopolysaccharide export system protein LptC NP_462227.1 3482532 D 99287 CDS NP_462228.1 16766613 1254841 3483076..3483630 1 NC_003197.1 LptA; periplasmic binding protein part of a ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; lipopolysaccharide ABC transporter substrate-binding protein LptA 3483630 lptA 1254841 lptA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipopolysaccharide ABC transporter substrate-binding protein LptA NP_462228.1 3483076 D 99287 CDS NP_462229.1 16766614 1254842 3483637..3484362 1 NC_003197.1 lipopolysaccharide ABC transporter ATP-binding protein LptB 3484362 yhbG 1254842 yhbG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipopolysaccharide ABC transporter ATP-binding protein LptB NP_462229.1 3483637 D 99287 CDS NP_462230.1 16766615 1254843 3484410..3485843 1 NC_003197.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3485843 rpoN 1254843 rpoN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNA polymerase factor sigma-54 NP_462230.1 3484410 D 99287 CDS NP_462231.1 16766616 1254844 3485866..3486153 1 NC_003197.1 sigma(54) modulation protein; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; ribosome hibernation promoting factor 3486153 yhbH 1254844 yhbH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribosome hibernation promoting factor NP_462231.1 3485866 D 99287 CDS NP_462232.1 16766617 1254845 3486271..3486762 1 NC_003197.1 PTS system transporter subunit IIA 3486762 ptsN 1254845 ptsN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system transporter subunit IIA NP_462232.1 3486271 D 99287 CDS NP_462233.1 16766618 1254846 3486808..3487662 1 NC_003197.1 kinase; contains P-loop; hypothetical protein 3487662 1254846 STM3323 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462233.1 3486808 D 99287 CDS NP_462234.1 16766619 1254847 3487659..3487931 1 NC_003197.1 N-regulated phosphocarrier protein NPr 3487931 ptsO 1254847 ptsO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-regulated phosphocarrier protein NPr NP_462234.1 3487659 D 99287 CDS NP_462235.1 16766620 1254848 3488180..3488812 1 NC_003197.1 cytoplasmic protein 3488812 yrbL 1254848 yrbL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462235.1 3488180 D 99287 CDS NP_462236.1 16766621 1254849 complement(3488887..3489615) 1 NC_003197.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 3489615 mtgA 1254849 mtgA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 monofunctional biosynthetic peptidoglycan transglycosylase NP_462236.1 3488887 R 99287 CDS NP_462237.1 16766622 1254850 complement(3489612..3490265) 1 NC_003197.1 isoprenoid biosynthesis protein 3490265 yhbL 1254850 yhbL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 isoprenoid biosynthesis protein NP_462237.1 3489612 R 99287 CDS NP_462238.1 16766623 1254851 complement(3490492..3492828) 1 NC_003197.1 sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor histidine kinase ArcB 3492828 arcB 1254851 arcB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aerobic respiration control sensor histidine kinase ArcB NP_462238.1 3490492 R 99287 CDS NP_462239.1 16766624 1254852 complement(3492922..3493851) 1 NC_003197.1 FeS oxidoreductase 3493851 yhcC 1254852 yhcC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 FeS oxidoreductase NP_462239.1 3492922 R 99287 CDS NP_462240.1 16766625 1254853 3494523..3498983 1 NC_003197.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3498983 gltB 1254853 gltB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamate synthase subunit alpha NP_462240.1 3494523 D 99287 CDS NP_462241.1 16766626 1254854 3498993..3500411 1 NC_003197.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3500411 gltD 1254854 gltD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamate synthase subunit beta NP_462241.1 3498993 D 99287 CDS NP_462242.1 16766627 1254855 3500618..3501721 1 NC_003197.1 cytoplasmic protein 3501721 yhcG 1254855 yhcG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462242.1 3500618 D 99287 CDS NP_462243.1 16766628 1254856 3501838..3503091 1 NC_003197.1 cytosine permease 3503091 codB 1254856 codB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytosine permease NP_462243.1 3501838 D 99287 CDS NP_462244.1 16766629 1254857 3503078..3504358 1 NC_003197.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3504358 1254857 STM3334 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytosine deaminase NP_462244.1 3503078 D 99287 CDS NP_462245.1 16766630 1254858 complement(3504441..3504908) 1 NC_003197.1 cytoplasmic protein 3504908 yhcH 1254858 yhcH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462245.1 3504441 R 99287 CDS NP_462246.1 16766631 1254859 complement(3504905..3505780) 1 NC_003197.1 catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase 3505780 nanK 1254859 nanK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-acetylmannosamine kinase NP_462246.1 3504905 R 99287 CDS NP_462247.1 16766632 1254860 complement(3505777..3506466) 1 NC_003197.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 3506466 nanE 1254860 nanE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-acetylmannosamine-6-phosphate 2-epimerase NP_462247.1 3505777 R 99287 CDS NP_462248.1 16766633 1254861 complement(3506513..3508003) 1 NC_003197.1 sialic acid transporter 3508003 nanT 1254861 nanT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sialic acid transporter NP_462248.1 3506513 R 99287 CDS NP_462249.1 16766634 1254862 complement(3508119..3509012) 1 NC_003197.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 3509012 nanA 1254862 nanA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-acetylneuraminate lyase NP_462249.1 3508119 R 99287 CDS NP_462250.1 16766635 1254863 complement(3509147..3509938) 1 NC_003197.1 Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR 3509938 yhcK 1254863 yhcK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NanR NP_462250.1 3509147 R 99287 CDS NP_462251.1 16766636 1254864 complement(3510047..3510547) 1 NC_003197.1 ClpXP protease specificity-enhancing factor 3510547 sspB 1254864 sspB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ClpXP protease specificity-enhancing factor NP_462251.1 3510047 R 99287 CDS NP_462252.1 16766637 1254865 complement(3510553..3511191) 1 NC_003197.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 3511191 sspA 1254865 sspA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 stringent starvation protein A NP_462252.1 3510553 R 99287 CDS NP_462253.1 16766638 1254866 complement(3511454..3512206) 1 NC_003197.1 cytoplasmic protein 3512206 1254866 STM3343 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462253.1 3511454 R 99287 CDS NP_462254.1 16766639 1254867 complement(3512406..3512798) 1 NC_003197.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3512798 rpsI 1254867 rpsI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S9 NP_462254.1 3512406 R 99287 CDS NP_462255.1 16766640 1254868 complement(3512814..3513242) 1 NC_003197.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3513242 rplM 1254868 rplM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L13 NP_462255.1 3512814 R 99287 CDS NP_462256.1 16766641 1254869 complement(3513545..3514669) 1 NC_003197.1 ATPase 3514669 yhcM 1254869 yhcM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATPase NP_462256.1 3513545 R 99287 CDS NP_462257.1 16766642 1254870 3514856..3515260 1 NC_003197.1 periplasmic protein 3515260 yhcB 1254870 yhcB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462257.1 3514856 D 99287 CDS NP_462258.1 16766643 1254871 3515417..3516784 1 NC_003197.1 serine endoprotease 3516784 degQ 1254871 degQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 serine endoprotease NP_462258.1 3515417 D 99287 CDS NP_462259.1 16766644 1254872 3516877..3517947 1 NC_003197.1 serine endoprotease 3517947 degS 1254872 degS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 serine endoprotease NP_462259.1 3516877 D 99287 CDS NP_462260.1 16766645 1254873 complement(3517981..3518712) 1 NC_003197.1 inner membrane protein 3518712 1254873 STM3350 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462260.1 3517981 R 99287 CDS NP_462261.1 16766646 1254874 complement(3518732..3520033) 1 NC_003197.1 oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); oxaloacetate decarboxylase subunit beta 3520033 oadB 1254874 oadB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxaloacetate decarboxylase subunit beta NP_462261.1 3518732 R 99287 CDS NP_462262.1 16766647 1254875 complement(3520046..3521821) 1 NC_003197.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase subunit alpha 3521821 oadA 1254875 oadA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxaloacetate decarboxylase subunit alpha NP_462262.1 3520046 R 99287 CDS NP_462263.1 16766648 1254876 complement(3521837..3522091) 1 NC_003197.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 3522091 oadG 1254876 oadG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxaloacetate decarboxylase subunit gamma NP_462263.1 3521837 R 99287 CDS NP_462264.1 16766649 1254877 complement(3522247..3522864) 1 NC_003197.1 Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta 3522864 1254877 STM3354 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L(+)-tartrate dehydratase subunit beta NP_462264.1 3522247 R 99287 CDS NP_462265.1 16766650 1254878 complement(3522864..3523763) 1 NC_003197.1 Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha 3523763 1254878 STM3355 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tartrate dehydratase subunit alpha NP_462265.1 3522864 R 99287 CDS NP_462266.1 16766651 1254879 complement(3523796..3525064) 1 NC_003197.1 cation transporter 3525064 1254879 STM3356 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cation transporter NP_462266.1 3523796 R 99287 CDS NP_462267.1 16766652 1254880 complement(3525275..3525940) 1 NC_003197.1 GntR family; GntR family regulatory protein 3525940 1254880 STM3357 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GntR family regulatory protein NP_462267.1 3525275 R 99287 CDS NP_462268.1 16766653 1254881 complement(3525927..3526556) 1 NC_003197.1 GntR family; GntR family regulatory protein 3526556 1254881 STM3358 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GntR family regulatory protein NP_462268.1 3525927 R 99287 CDS NP_462269.1 16766654 1254882 complement(3526676..3527614) 1 NC_003197.1 oxidizes malate to oxaloacetate; malate dehydrogenase 3527614 mdh 1254882 mdh Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 malate dehydrogenase NP_462269.1 3526676 R 99287 CDS NP_462270.1 16766655 1254883 3528028..3528498 1 NC_003197.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 3528498 argR 1254883 argR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arginine repressor NP_462270.1 3528028 D 99287 CDS NP_462271.1 16766656 1254884 3528863..3529126 1 NC_003197.1 outer membrane protein 3529126 yhcN 1254884 yhcN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_462271.1 3528863 D 99287 CDS NP_462272.1 16766657 1254885 3529230..3529496 1 NC_003197.1 periplasmic protein 3529496 1254885 STM3362 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462272.1 3529230 D 99287 CDS NP_462273.1 16766658 1254886 complement(3529556..3529828) 1 NC_003197.1 cytoplasmic protein 3529828 yhcO 1254886 yhcO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462273.1 3529556 R 99287 CDS NP_462274.1 16766659 1254887 complement(3530000..3531967) 1 NC_003197.1 with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux pump subunit AaeB 3531967 aaeB 1254887 aaeB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 p-hydroxybenzoic acid efflux pump subunit AaeB NP_462274.1 3530000 R 99287 CDS NP_462275.1 16766660 1254888 complement(3531973..3532905) 1 NC_003197.1 with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux pump subunit AaeA 3532905 aaeA 1254888 aaeA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 p-hydroxybenzoic acid efflux pump subunit AaeA NP_462275.1 3531973 R 99287 CDS NP_462276.1 16766661 1254889 complement(3532913..3533116) 1 NC_003197.1 membrane protein AaeX; the gene is a member of the aaeXAB operon; membrane protein AaeX 3533116 aaeX 1254889 aaeX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane protein AaeX NP_462276.1 3532913 R 99287 CDS NP_462277.1 16766662 1254890 3533298..3534227 1 NC_003197.1 LysR family transcriptional regulator 3534227 yhcS 1254890 yhcS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_462277.1 3533298 D 99287 CDS NP_462278.1 16766663 1254891 complement(3534350..3535795) 1 NC_003197.1 responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD 3535795 tldD 1254891 tldD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protease TldD NP_462278.1 3534350 R 99287 CDS NP_462279.1 16766664 1254892 complement(3535940..3539740) 1 NC_003197.1 hypothetical protein 3539740 1254892 STM3369 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462279.1 3535940 R 99287 CDS NP_462280.1 16766665 1254893 complement(3539847..3541316) 1 NC_003197.1 involved in the processing of the 5'end of 16S rRNA; RNase G 3541316 cafA 1254893 cafA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNase G NP_462280.1 3539847 R 99287 CDS NP_462281.1 16766666 1254894 complement(3541306..3541899) 1 NC_003197.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 3541899 maf 1254894 maf Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Maf-like protein NP_462281.1 3541306 R 99287 CDS NP_462282.1 16766667 1254895 complement(3541908..3542399) 1 NC_003197.1 part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD 3542399 mreD 1254895 mreD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rod shape-determining protein MreD NP_462282.1 3541908 R 99287 CDS NP_462283.1 16766668 1254896 complement(3542399..3543451) 1 NC_003197.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3543451 mreC 1254896 mreC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rod shape-determining protein MreC NP_462283.1 3542399 R 99287 CDS NP_462284.1 16766669 1254897 complement(3543516..3544559) 1 NC_003197.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3544559 mreB 1254897 mreB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rod shape-determining protein MreB NP_462284.1 3543516 R 99287 CDS NP_951055.1 39980859 2673730 3544667..3544858 1 NC_003197.1 hypothetical protein 3544858 2673730 STM3374.1n Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_951055.1 3544667 D 99287 CDS NP_462285.1 16766670 1254898 complement(3544867..3546807) 1 NC_003197.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 3546807 yhdA 1254898 yhdA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein CsrD NP_462285.1 3544867 R 99287 CDS NP_462286.1 16766671 1254899 3547011..3547985 1 NC_003197.1 oxidoreductase 3547985 yhdH 1254899 yhdH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_462286.1 3547011 D 99287 CDS NP_462287.1 16766672 1254900 3548098..3549102 1 NC_003197.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase catalytic subunit YedY 3549102 yedY 1254900 yedY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfite oxidase catalytic subunit YedY NP_462287.1 3548098 D 99287 CDS NP_462288.1 16766673 1254901 3549103..3549702 1 NC_003197.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase heme-binding subunit YedZ 3549702 yedZ 1254901 yedZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfite oxidase heme-binding subunit YedZ NP_462288.1 3549103 D 99287 CDS NP_462289.1 16766674 1254902 3550095..3550565 1 NC_003197.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3550565 accB 1254902 accB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit NP_462289.1 3550095 D 99287 CDS NP_462290.1 16766675 1254903 3550576..3551925 1 NC_003197.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 3551925 accC 1254903 accC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyl-CoA carboxylase biotin carboxylase subunit NP_462290.1 3550576 D 99287 CDS NP_462291.1 16766676 1254904 3552034..3552276 1 NC_003197.1 inner membrane protein 3552276 yhdT 1254904 yhdT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462291.1 3552034 D 99287 CDS NP_462292.1 16766677 1254905 3552266..3553717 1 NC_003197.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; SSS family sodium/pantothenate symporter 3553717 panF 1254905 panF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SSS family sodium/pantothenate symporter NP_462292.1 3552266 D 99287 CDS NP_462293.1 16766678 1254906 3553729..3554610 1 NC_003197.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3554610 prmA 1254906 prmA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L11 methyltransferase NP_462293.1 3553729 D 99287 CDS NP_462294.1 16766679 1254907 3555271..3556236 1 NC_003197.1 TIM-barrel enzyme; hypothetical 35.9 kDa protein in pmrA-fis intergenic region (SW:YHDG_SALTY); tRNA-dihydrouridine synthase B 3556236 yhdG 1254907 yhdG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA-dihydrouridine synthase B NP_462294.1 3555271 D 99287 CDS NP_462295.1 16766680 1254908 3556262..3556558 1 NC_003197.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3556558 fis 1254908 fis Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding protein Fis NP_462295.1 3556262 D 99287 CDS NP_462296.1 16766681 1254909 3556644..3557528 1 NC_003197.1 methyltransferase 3557528 yhdJ 1254909 yhdJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methyltransferase NP_462296.1 3556644 D 99287 CDS NP_462297.1 16766682 1254910 3557611..3557775 1 NC_003197.1 periplasmic protein 3557775 yhdU 1254910 yhdU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462297.1 3557611 D 99287 CDS NP_462298.1 16766683 1254911 3557926..3560025 1 NC_003197.1 membrane domain involved in; diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain 2; signal transduction protein 3560025 1254911 STM3388 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 signal transduction protein NP_462298.1 3557926 D 99287 CDS NP_462299.1 16766684 1254912 complement(3560028..3560690) 1 NC_003197.1 DNA-binding transcriptional regulator EnvR 3560690 envR 1254912 envR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional regulator EnvR NP_462299.1 3560028 R 99287 CDS NP_462300.1 16766685 1254913 3561104..3562261 1 NC_003197.1 multidrug efflux protein AcrE 3562261 acrE 1254913 acrE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug efflux protein AcrE NP_462300.1 3561104 D 99287 CDS NP_462301.1 16766686 1254914 3562273..3565386 1 NC_003197.1 multidrug efflux protein AcrF 3565386 acrF 1254914 acrF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug efflux protein AcrF NP_462301.1 3562273 D 99287 CDS NP_462302.1 16766687 1254915 3565622..3565843 1 NC_003197.1 outer membrane lipoprotein 3565843 yhdV 1254915 yhdV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_462302.1 3565622 D 99287 CDS NP_462303.1 16766688 1254922 3572482..3573036 1 NC_003197.1 ferripyochelin-binding protein 3573036 yrdA 1254922 yrdA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferripyochelin-binding protein NP_462303.1 3572482 D 99287 CDS NP_462304.1 16766689 1254923 complement(3573012..3573269) 1 NC_003197.1 periplasmic protein 3573269 yrdB 1254923 yrdB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462304.1 3573012 R 99287 CDS NP_462305.1 16766690 1254924 complement(3573266..3574084) 1 NC_003197.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate dehydrogenase 3574084 aroE 1254924 aroE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 shikimate dehydrogenase NP_462305.1 3573266 R 99287 CDS NP_462306.1 16766691 1254925 complement(3574089..3574661) 1 NC_003197.1 RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; threonylcarbamoyl-AMP synthase 3574661 tsaC 1254925 tsaC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 threonylcarbamoyl-AMP synthase NP_462306.1 3574089 R 99287 CDS NP_462307.1 16766692 1254926 complement(3574666..3575208) 1 NC_003197.1 DNA topoisomerase 3575208 yrdD 1254926 yrdD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA topoisomerase NP_462307.1 3574666 R 99287 CDS NP_462308.1 16766693 1254927 complement(3575235..3575708) 1 NC_003197.1 hypothetical protein 3575708 1254927 STM3404 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462308.1 3575235 R 99287 CDS NP_462309.1 16766694 1254928 complement(3575680..3576804) 1 NC_003197.1 DNA protecting protein DprA 3576804 smf 1254928 smf Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA protecting protein DprA NP_462309.1 3575680 R 99287 CDS NP_462310.1 16766695 1254929 3576936..3577445 1 NC_003197.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3577445 def 1254929 def Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptide deformylase NP_462310.1 3576936 D 99287 CDS NP_462311.1 16766696 1254930 3577461..3578408 1 NC_003197.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3578408 fmt 1254930 fmt Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methionyl-tRNA formyltransferase NP_462311.1 3577461 D 99287 CDS NP_462312.1 16766697 1254931 3578460..3579749 1 NC_003197.1 catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; rRNA small subunit methyltransferase B 3579749 sun 1254931 sun Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA small subunit methyltransferase B NP_462312.1 3578460 D 99287 CDS NP_462313.1 16766698 1254932 3579771..3581147 1 NC_003197.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; Trk system potassium uptake protein TrkA 3581147 trkA 1254932 trkA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Trk system potassium uptake protein TrkA NP_462313.1 3579771 D 99287 CDS NP_462314.1 16766699 1254933 3581289..3581702 1 NC_003197.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3581702 mscL 1254933 mscL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 large-conductance mechanosensitive channel NP_462314.1 3581289 D 99287 CDS NP_462315.1 16766700 1254934 complement(3581638..3581907) 1 NC_003197.1 cytoplasmic protein 3581907 1254934 STM3411 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462315.1 3581638 R 99287 CDS NP_462316.1 16766701 1254935 complement(3581965..3582390) 1 NC_003197.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 3582390 zntR 1254935 zntR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 zinc-responsive transcriptional regulator NP_462316.1 3581965 R 99287 CDS NP_462317.1 16766702 1254936 complement(3582401..3582769) 1 NC_003197.1 cytoplasmic protein 3582769 yhdN 1254936 yhdN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462317.1 3582401 R 99287 CDS NP_462318.1 16766703 1254937 complement(3582877..3583260) 1 NC_003197.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 3583260 rplQ 1254937 rplQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L17 NP_462318.1 3582877 R 99287 CDS NP_462319.1 16766704 1254938 complement(3583301..3584290) 1 NC_003197.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 3584290 rpoA 1254938 rpoA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-directed RNA polymerase subunit alpha NP_462319.1 3583301 R 99287 CDS NP_462320.1 16766705 1254939 complement(3584316..3584936) 1 NC_003197.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 3584936 rpsD 1254939 rpsD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S4 NP_462320.1 3584316 R 99287 CDS NP_462321.1 16766706 1254940 complement(3584970..3585359) 1 NC_003197.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 3585359 rpsK 1254940 rpsK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S11 NP_462321.1 3584970 R 99287 CDS NP_462322.1 16766707 1254941 complement(3585376..3585732) 1 NC_003197.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 3585732 rpsM 1254941 rpsM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S13 NP_462322.1 3585376 R 99287 CDS NP_462323.1 16766708 1254942 complement(3585879..3585995) 1 NC_003197.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 3585995 rpmJ 1254942 rpmJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L36 NP_462323.1 3585879 R 99287 CDS NP_462324.1 16766709 1254943 complement(3586027..3587358) 1 NC_003197.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 3587358 secY 1254943 secY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 preprotein translocase subunit SecY NP_462324.1 3586027 R 99287 CDS NP_462325.1 16766710 1254944 complement(3587366..3587800) 1 NC_003197.1 late assembly protein; 50S ribosomal protein L15 3587800 rplO 1254944 rplO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L15 NP_462325.1 3587366 R 99287 CDS NP_462326.1 16766711 1254945 complement(3587804..3587983) 1 NC_003197.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 3587983 rpmD 1254945 rpmD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L30 NP_462326.1 3587804 R 99287 CDS NP_462327.1 16766712 1254946 complement(3587987..3588490) 1 NC_003197.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 3588490 rpsE 1254946 rpsE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S5 NP_462327.1 3587987 R 99287 CDS NP_462328.1 16766713 1254947 complement(3588505..3588858) 1 NC_003197.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 3588858 rplR 1254947 rplR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L18 NP_462328.1 3588505 R 99287 CDS NP_462329.1 16766714 1254948 complement(3588868..3589401) 1 NC_003197.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 3589401 rplF 1254948 rplF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L6 NP_462329.1 3588868 R 99287 CDS NP_462330.1 16766715 1254949 complement(3589414..3589806) 1 NC_003197.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 3589806 rpsH 1254949 rpsH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S8 NP_462330.1 3589414 R 99287 CDS NP_462331.3 308065942 1254950 complement(3589840..3590145) 1 NC_003197.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 3590145 rpsN 1254950 rpsN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S14 NP_462331.3 3589840 R 99287 CDS NP_462332.1 16766717 1254951 complement(3590160..3590699) 1 NC_003197.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 3590699 rplE 1254951 rplE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L5 NP_462332.1 3590160 R 99287 CDS NP_462333.1 16766718 1254952 complement(3590714..3591028) 1 NC_003197.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 3591028 rplX 1254952 rplX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L24 NP_462333.1 3590714 R 99287 CDS NP_462334.1 16766719 1254953 complement(3591039..3591410) 1 NC_003197.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 3591410 rplN 1254953 rplN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L14 NP_462334.1 3591039 R 99287 CDS NP_462335.1 16766720 1254954 complement(3591574..3591828) 1 NC_003197.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 3591828 rpsQ 1254954 rpsQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S17 NP_462335.1 3591574 R 99287 CDS NP_462336.1 16766721 1254955 complement(3591828..3592019) 1 NC_003197.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 3592019 rpmC 1254955 rpmC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L29 NP_462336.1 3591828 R 99287 CDS NP_462337.1 16766722 1254956 complement(3592019..3592429) 1 NC_003197.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 3592429 rplP 1254956 rplP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L16 NP_462337.1 3592019 R 99287 CDS NP_462338.1 16766723 1254957 complement(3592442..3593143) 1 NC_003197.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 3593143 rpsC 1254957 rpsC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S3 NP_462338.1 3592442 R 99287 CDS NP_462339.1 16766724 1254958 complement(3593161..3593493) 1 NC_003197.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 3593493 rplV 1254958 rplV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L22 NP_462339.1 3593161 R 99287 CDS NP_462340.1 16766725 1254959 complement(3593508..3593786) 1 NC_003197.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 3593786 rpsS 1254959 rpsS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S19 NP_462340.1 3593508 R 99287 CDS NP_462341.1 16766726 1254960 complement(3593803..3594624) 1 NC_003197.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 3594624 rplB 1254960 rplB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L2 NP_462341.1 3593803 R 99287 CDS NP_462342.1 16766727 1254961 complement(3594642..3594944) 1 NC_003197.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 3594944 rplW 1254961 rplW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L23 NP_462342.1 3594642 R 99287 CDS NP_462343.1 16766728 1254962 complement(3594941..3595546) 1 NC_003197.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 3595546 rplD 1254962 rplD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L4 NP_462343.1 3594941 R 99287 CDS NP_462344.1 16766729 1254963 complement(3595557..3596186) 1 NC_003197.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 3596186 rplC 1254963 rplC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L3 NP_462344.1 3595557 R 99287 CDS NP_462345.1 16766730 1254964 complement(3596219..3596530) 1 NC_003197.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 3596530 rpsJ 1254964 rpsJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S10 NP_462345.1 3596219 R 99287 CDS NP_462346.1 16766731 1254965 3596910..3597377 1 NC_003197.1 leader peptidase HopD 3597377 hopD 1254965 hopD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 leader peptidase HopD NP_462346.1 3596910 D 99287 CDS NP_462347.1 16766732 1254966 complement(3597374..3597850) 1 NC_003197.1 iron storage protein; bacterioferritin 3597850 bfr 1254966 bfr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bacterioferritin NP_462347.1 3597374 R 99287 CDS NP_462348.1 16766733 1254967 complement(3597923..3598117) 1 NC_003197.1 regulatory or redox component complexing with Bfr in iron storage and mobility (SW:BFD_SALTY); bacterioferritin-associated ferredoxin 3598117 bfd 1254967 bfd Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bacterioferritin-associated ferredoxin NP_462348.1 3597923 R 99287 CDS NP_462349.1 16766734 1254968 complement(3598302..3599486) 1 NC_003197.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 3599486 tuf 1254968 tuf Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 elongation factor Tu NP_462349.1 3598302 R 99287 CDS NP_462350.1 16766735 1254969 complement(3599558..3601672) 1 NC_003197.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3601672 fusA 1254969 fusA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 elongation factor G NP_462350.1 3599558 R 99287 CDS NP_462351.1 16766736 1254970 complement(3601769..3602239) 1 NC_003197.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 3602239 rpsG 1254970 rpsG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S7 NP_462351.1 3601769 R 99287 CDS NP_462352.1 16766737 1254971 complement(3602335..3602709) 1 NC_003197.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 3602709 rpsL 1254971 rpsL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S12 NP_462352.1 3602335 R 99287 CDS NP_462353.1 16766738 1254972 complement(3602835..3603122) 1 NC_003197.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; tRNA 2-thiouridine synthesizing protein TusB 3603122 yheL 1254972 yheL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA 2-thiouridine synthesizing protein TusB NP_462353.1 3602835 R 99287 CDS NP_462354.1 16766739 1254973 complement(3603130..3603486) 1 NC_003197.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; tRNA 2-thiouridine synthesizing protein TusC 3603486 yheM 1254973 yheM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA 2-thiouridine synthesizing protein TusC NP_462354.1 3603130 R 99287 CDS NP_462355.1 16766740 1254974 complement(3603486..3603872) 1 NC_003197.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; tRNA 2-thiouridine synthesizing protein TusD 3603872 yheN 1254974 yheN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA 2-thiouridine synthesizing protein TusD NP_462355.1 3603486 R 99287 CDS NP_462356.1 16766741 1254975 complement(3603872..3604594) 1 NC_003197.1 regulatory protein 3604594 yheO 1254975 yheO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_462356.1 3603872 R 99287 CDS NP_462357.1 16766742 1254976 complement(3604871..3605689) 1 NC_003197.1 rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase 3605689 fkpA 1254976 fkpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 FKBP-type peptidyl-prolyl cis-trans isomerase NP_462357.1 3604871 R 99287 CDS NP_462358.1 16766743 1254977 3605909..3606127 1 NC_003197.1 hypothetical protein 3606127 1254977 STM3454 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462358.1 3605909 D 99287 CDS NP_462359.1 16766744 1254978 complement(3606315..3606905) 1 NC_003197.1 rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase 3606905 slyD 1254978 slyD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 FKBP-type peptidyl-prolyl cis-trans isomerase NP_462359.1 3606315 R 99287 CDS NP_462360.1 16766745 1254979 complement(3607000..3607200) 1 NC_003197.1 cytoplasmic protein 3607200 yheV 1254979 yheV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462360.1 3607000 R 99287 CDS NP_462361.1 16766746 1254980 complement(3607211..3609016) 1 NC_003197.1 involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB 3609016 kefB 1254980 kefB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione-regulated potassium-efflux system protein KefB NP_462361.1 3607211 R 99287 CDS NP_462362.1 16766747 1254981 complement(3609016..3609567) 1 NC_003197.1 required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG 3609567 yheR 1254981 yheR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione-regulated potassium-efflux system ancillary protein KefG NP_462362.1 3609016 R 99287 CDS NP_462363.1 16766748 1254982 3609833..3611740 1 NC_003197.1 ABC transporter ATP-binding protein 3611740 yheS 1254982 yheS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter ATP-binding protein NP_462363.1 3609833 D 99287 CDS NP_462364.1 16766749 1254984 complement(3612126..3612437) 1 NC_003197.1 cytoplasmic protein 3612437 1254984 STM3461 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462364.1 3612126 R 99287 CDS NP_462365.1 16766750 1254985 3612635..3613702 1 NC_003197.1 alpha/beta-hydrolase fold; hydrolase 3613702 yheT 1254985 yheT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrolase NP_462365.1 3612635 D 99287 CDS NP_462366.1 16766751 1254986 3613710..3613916 1 NC_003197.1 hypothetical protein 3613916 1254986 STM3463 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462366.1 3613710 D 99287 CDS NP_462367.1 16766752 1254987 3613968..3614837 1 NC_003197.1 phosphoribulokinase 3614837 prkB 1254987 prkB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoribulokinase NP_462367.1 3613968 D 99287 CDS NP_462368.1 16766753 1254988 complement(3614933..3615337) 1 NC_003197.1 inner membrane protein 3615337 yhfA 1254988 yhfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462368.1 3614933 R 99287 CDS NP_462369.1 16766754 1254989 3615645..3616277 1 NC_003197.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-activated global transcriptional regulator 3616277 crp 1254989 crp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cAMP-activated global transcriptional regulator NP_462369.1 3615645 D 99287 CDS NP_462370.1 16766755 1254990 3616326..3618413 1 NC_003197.1 inner membrane protein 3618413 yhfK 1254990 yhfK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462370.1 3616326 D 99287 CDS NP_462371.1 16766756 1254991 complement(3618456..3619673) 1 NC_003197.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 3619673 argD 1254991 argD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein NP_462371.1 3618456 R 99287 CDS NP_462372.1 16766757 1254992 complement(3619759..3620322) 1 NC_003197.1 aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; minodeoxychorismate synthase component II 3620322 pabA 1254992 pabA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 minodeoxychorismate synthase component II NP_462372.1 3619759 R 99287 CDS NP_462373.1 16766758 1254993 complement(3620354..3620956) 1 NC_003197.1 cell filamentation protein Fic (SW:FIC_SALTY); stationary phase induced gene; affects cell division; adenosine monophosphate-protein transferase Fic 3620956 fic 1254993 fic Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 adenosine monophosphate-protein transferase Fic NP_462373.1 3620354 R 99287 CDS NP_462374.1 16766759 1254994 complement(3620946..3621113) 1 NC_003197.1 hypothetical 6.8 kDa protein in fic-ppiA intergenic region (SW:YHFG_SALTY); hypothetical protein 3621113 1254994 STM3471 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462374.1 3620946 R 99287 CDS NP_462375.1 16766760 1254995 complement(3621222..3621794) 1 NC_003197.1 peptidyl-prolyl cis-trans isomerase A (SW:PPIA_SALTY); rotamase A; peptidyl-prolyl cis-trans isomerase A 3621794 ppiA 1254995 ppiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidyl-prolyl cis-trans isomerase A NP_462375.1 3621222 R 99287 CDS NP_462376.1 16766761 1254996 3622071..3623252 1 NC_003197.1 transporter 3623252 yhfC 1254996 yhfC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transporter NP_462376.1 3622071 D 99287 CDS NP_462377.1 16766762 1254997 3623515..3626058 1 NC_003197.1 nitrite reductase large subunit 3626058 nirB 1254997 nirB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrite reductase large subunit NP_462377.1 3623515 D 99287 CDS NP_462378.1 16766763 1254998 3626055..3626381 1 NC_003197.1 involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit 3626381 nirD 1254998 nirD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrite reductase small subunit NP_462378.1 3626055 D 99287 CDS NP_462379.1 16766764 1254999 3626647..3627456 1 NC_003197.1 member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 3627456 nirC 1254999 nirC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrite transporter NirC NP_462379.1 3626647 D 99287 CDS NP_462380.1 16766765 1255000 3627468..3628841 1 NC_003197.1 multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin; siroheme synthase 3628841 cysG 1255000 cysG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 siroheme synthase NP_462380.1 3627468 D 99287 CDS NP_462381.1 16766766 1255001 3629167..3635028 1 NC_003197.1 surface-exposed virulence protein BigA 3635028 bigA 1255001 bigA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 surface-exposed virulence protein BigA NP_462381.1 3629167 D 99287 CDS NP_462382.1 16766767 1255002 complement(3635160..3635618) 1 NC_003197.1 transposase for insertion sequence element is200 (SW:T200_SALTY); insertion sequence element IS200 transposase 3635618 tnpA_5 1255002 tnpA_5 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 insertion sequence element IS200 transposase NP_462382.1 3635160 R 99287 CDS NP_462383.1 16766768 1255003 3635932..3636102 1 NC_003197.1 outer membrane lipoprotein 3636102 yhfL 1255003 yhfL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_462383.1 3635932 D 99287 CDS NP_462384.1 16766769 1255004 complement(3636247..3637251) 1 NC_003197.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophan--tRNA ligase 3637251 trpS 1255004 trpS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tryptophan--tRNA ligase NP_462384.1 3636247 R 99287 CDS NP_462385.1 16766770 1255005 complement(3637244..3638002) 1 NC_003197.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 3638002 gph 1255005 gph Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoglycolate phosphatase NP_462385.1 3637244 R 99287 CDS NP_462386.1 16766771 1255006 complement(3637995..3638672) 1 NC_003197.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 3638672 rpe 1255006 rpe Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribulose-phosphate 3-epimerase NP_462386.1 3637995 R 99287 CDS NP_462387.1 16766772 1255007 complement(3638690..3639526) 1 NC_003197.1 DNA adenine methylase (SW:DMA_SALTY); DNA adenine methylase 3639526 dam 1255007 dam Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA adenine methylase NP_462387.1 3638690 R 99287 CDS NP_462388.1 16766773 1255008 complement(3639707..3640984) 1 NC_003197.1 membrane protein 3640984 damX 1255008 damX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane protein NP_462388.1 3639707 R 99287 CDS NP_462389.1 16766774 1255009 complement(3641082..3642170) 1 NC_003197.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 3642170 aroB 1255009 aroB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-dehydroquinate synthase NP_462389.1 3641082 R 99287 CDS NP_462390.1 16766775 1255010 complement(3642227..3642748) 1 NC_003197.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 3642748 aroK 1255010 aroK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 shikimate kinase I NP_462390.1 3642227 R 99287 CDS NP_462391.1 16766776 1255011 complement(3643213..3644451) 1 NC_003197.1 outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; transporter 3644451 hofQ 1255011 hofQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transporter NP_462391.1 3643213 R 99287 CDS NP_462392.1 16766777 1255012 complement(3644366..3644767) 1 NC_003197.1 inner membrane protein 3644767 yrfA 1255012 yrfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462392.1 3644366 R 99287 CDS NP_462393.1 16766778 1255013 complement(3644757..3645230) 1 NC_003197.1 inner membrane protein 3645230 yrfB 1255013 yrfB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462393.1 3644757 R 99287 CDS NP_462394.1 16766779 1255014 complement(3645214..3645753) 1 NC_003197.1 inner membrane protein 3645753 yrfC 1255014 yrfC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462394.1 3645214 R 99287 CDS NP_462395.1 16766780 1255015 complement(3645753..3646532) 1 NC_003197.1 periplasmic protein 3646532 yrfD 1255015 yrfD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462395.1 3645753 R 99287 CDS NP_462396.2 228960702 1255016 3646653..3649205 1 NC_003197.1 bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; bifunctional murein transglycosylase/murein transpeptidase 3649205 mrcA 1255016 mrcA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional murein transglycosylase/murein transpeptidase NP_462396.2 3646653 D 99287 CDS NP_462397.2 39546368 1255017 complement(3649301..3649864) 1 NC_003197.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 3649864 nudE 1255017 nudE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ADP-ribose diphosphatase NudE NP_462397.2 3649301 R 99287 CDS NP_462398.1 16766783 1255018 3650187..3652319 1 NC_003197.1 intracellular growth attenuator protein IgaA 3652319 igaA 1255018 igaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 intracellular growth attenuator protein IgaA NP_462398.1 3650187 D 99287 CDS NP_462399.1 16766784 1255019 3652384..3653052 1 NC_003197.1 hydrolase 3653052 yrfG 1255019 yrfG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrolase NP_462399.1 3652384 D 99287 CDS NP_462400.1 16766785 1255020 3653063..3653464 1 NC_003197.1 predicted small RNA-binding protein; ribosome-associated heat shock protein Hsp15 3653464 yrfH 1255020 yrfH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribosome-associated heat shock protein Hsp15 NP_462400.1 3653063 D 99287 CDS NP_462401.2 161353582 1255021 3653489..3654367 1 NC_003197.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 3654367 hslO 1255021 hslO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Hsp33-like chaperonin NP_462401.2 3653489 D 99287 CDS NP_462402.1 16766787 1255022 complement(3654477..3656186) 1 NC_003197.1 inner membrane protein 3656186 yhgE 1255022 yhgE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462402.1 3654477 R 99287 CDS NP_462403.1 16766788 1255023 3656566..3658182 1 NC_003197.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3658182 pckA 1255023 pckA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoenolpyruvate carboxykinase NP_462403.1 3656566 D 99287 CDS NP_462404.1 16766789 1255024 complement(3658257..3659609) 1 NC_003197.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein EnvZ 3659609 envZ 1255024 envZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 osmolarity sensor protein EnvZ NP_462404.1 3658257 R 99287 CDS NP_462405.1 16766790 1255025 complement(3659606..3660325) 1 NC_003197.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator OmpR 3660325 ompR 1255025 ompR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 osmolarity response regulator OmpR NP_462405.1 3659606 R 99287 CDS NP_462406.1 16766791 1255026 3660551..3661024 1 NC_003197.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 3661024 greB 1255026 greB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcription elongation factor GreB NP_462406.1 3660551 D 99287 CDS NP_462407.2 308065953 1255027 3661123..3663453 1 NC_003197.1 RNase R 3663453 yhgF 1255027 yhgF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNase R NP_462407.2 3661123 D 99287 CDS NP_462408.1 16766793 1255028 3663890..3664117 1 NC_003197.1 ferrous iron transport protein A 3664117 feoA 1255028 feoA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferrous iron transport protein A NP_462408.1 3663890 D 99287 CDS NP_462409.1 16766794 1255029 3664136..3666454 1 NC_003197.1 cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 3666454 feoB 1255029 feoB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferrous iron transport protein B NP_462409.1 3664136 D 99287 CDS NP_462410.1 16766795 1255030 3666467..3666703 1 NC_003197.1 ferrous iron transport protein C 3666703 yhgG 1255030 yhgG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferrous iron transport protein C NP_462410.1 3666467 D 99287 CDS NP_462411.1 16766796 1255031 3666938..3667852 1 NC_003197.1 cytoplasmic protein 3667852 1255031 STM3508 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462411.1 3666938 D 99287 CDS NP_462412.1 16766797 1255032 complement(3667888..3668658) 1 NC_003197.1 Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; pimeloyl-ACP methyl ester esterase 3668658 bioH 1255032 bioH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pimeloyl-ACP methyl ester esterase NP_462412.1 3667888 R 99287 CDS NP_462413.1 16766798 1255033 3668696..3669379 1 NC_003197.1 hypothetical protein 3669379 1255033 STM3510 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462413.1 3668696 D 99287 CDS NP_462414.1 16766799 1255034 3669438..3670013 1 NC_003197.1 Fe/S biogenesis protein NfuA 3670013 yhgI 1255034 yhgI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Fe/S biogenesis protein NfuA NP_462414.1 3669438 D 99287 CDS NP_462415.1 16766800 1255035 3670390..3671706 1 NC_003197.1 high-affinity gluconate permease 3671706 gntT 1255035 gntT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 high-affinity gluconate permease NP_462415.1 3670390 D 99287 CDS NP_462416.1 16766801 1255036 complement(3671825..3673903) 1 NC_003197.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 3673903 malQ 1255036 malQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-alpha-glucanotransferase NP_462416.1 3671825 R 99287 CDS NP_462417.1 16766802 1255037 complement(3673913..3676306) 1 NC_003197.1 maltodextrin phosphorylase 3676306 malP 1255037 malP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 maltodextrin phosphorylase NP_462417.1 3673913 R 99287 CDS NP_462418.1 16766803 1255038 3676900..3679605 1 NC_003197.1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; HTH-type transcriptional regulator MalT 3679605 malT 1255038 malT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator MalT NP_462418.1 3676900 D 99287 CDS NP_462419.1 16766804 1255039 complement(3679693..3679968) 1 NC_003197.1 cytoplasmic protein 3679968 1255039 STM3516 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462419.1 3679693 R 99287 CDS NP_462420.1 16766805 1255040 complement(3679971..3680231) 1 NC_003197.1 DNA-damage-inducibile protein 3680231 1255040 STM3517 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-damage-inducibile protein NP_462420.1 3679971 R 99287 CDS NP_462421.1 16766806 1255041 complement(3680340..3681359) 1 NC_003197.1 catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; RNA 3'-terminal-phosphate cyclase 3681359 rtcA 1255041 rtcA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNA 3'-terminal-phosphate cyclase NP_462421.1 3680340 R 99287 CDS NP_462422.1 16766807 1255042 complement(3681363..3682580) 1 NC_003197.1 RNA-splicing ligase RtcB 3682580 rtcB 1255042 rtcB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNA-splicing ligase RtcB NP_462422.1 3681363 R 99287 CDS NP_462423.1 16766808 1255044 complement(3683125..3684678) 1 NC_003197.1 ribonucleoprotein related-protein 3684678 1255044 STM3521 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonucleoprotein related-protein NP_462423.1 3683125 R 99287 CDS NP_462424.1 16766809 1255045 3684868..3686451 1 NC_003197.1 rtcBA sigma 54-dependent regulator 3686451 rtcR 1255045 rtcR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rtcBA sigma 54-dependent regulator NP_462424.1 3684868 D 99287 CDS NP_462425.1 16766810 1255046 complement(3686448..3687206) 1 NC_003197.1 represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; DNA-binding transcriptional repressor GlpR 3687206 glpR 1255046 glpR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional repressor GlpR NP_462425.1 3686448 R 99287 CDS NP_462426.1 16766811 1255047 complement(3687300..3688130) 1 NC_003197.1 protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; rhomboid protease GlpG 3688130 glpG 1255047 glpG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rhomboid protease GlpG NP_462426.1 3687300 R 99287 CDS NP_462427.1 16766812 1255048 complement(3688206..3688532) 1 NC_003197.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase GlpE 3688532 glpE 1255048 glpE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiosulfate sulfurtransferase GlpE NP_462427.1 3688206 R 99287 CDS NP_462428.1 16766813 1255049 3688731..3690239 1 NC_003197.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3690239 glpD 1255049 glpD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerol-3-phosphate dehydrogenase NP_462428.1 3688731 D 99287 CDS NP_462429.1 16766814 1255050 complement(3690286..3690831) 1 NC_003197.1 inner membrane protein 3690831 1255050 STM3527 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462429.1 3690286 R 99287 CDS NP_462430.1 16766815 1255051 complement(3690841..3692400) 1 NC_003197.1 periplasmic phosphate-binding protein 3692400 1255051 STM3528 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic phosphate-binding protein NP_462430.1 3690841 R 99287 CDS NP_462431.1 16766816 1255052 complement(3692494..3693603) 1 NC_003197.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 3693603 gldA 1255052 gldA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerol dehydrogenase NP_462431.1 3692494 R 99287 CDS NP_462432.1 16766817 1255054 3695271..3696986 1 NC_003197.1 dihydroxyacid dehydratase 3696986 1255054 STM3531 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dihydroxyacid dehydratase NP_462432.1 3695271 D 99287 CDS NP_462433.1 16766818 1255055 3697030..3697935 1 NC_003197.1 dihydrodipicolinate synthetase 3697935 1255055 STM3532 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dihydrodipicolinate synthetase NP_462433.1 3697030 D 99287 CDS NP_462434.1 16766819 1255056 complement(3697979..3698734) 1 NC_003197.1 transcriptional regulator 3698734 1255056 STM3533 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_462434.1 3697979 R 99287 CDS NP_462435.1 16766820 1255057 complement(3698912..3701359) 1 NC_003197.1 glycogen phosphorylase 3701359 glgP 1255057 glgP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycogen phosphorylase NP_462435.1 3698912 R 99287 CDS NP_462436.1 16766821 1255058 complement(3701379..3702812) 1 NC_003197.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 3702812 glgA 1255058 glgA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycogen synthase NP_462436.1 3701379 R 99287 CDS NP_462437.1 16766822 1255059 complement(3702812..3704107) 1 NC_003197.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 3704107 glgC 1255059 glgC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucose-1-phosphate adenylyltransferase NP_462437.1 3702812 R 99287 CDS NP_462438.1 16766823 1255060 complement(3704122..3706098) 1 NC_003197.1 catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; glycogen debranching protein 3706098 glgX 1255060 glgX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycogen debranching protein NP_462438.1 3704122 R 99287 CDS NP_462439.1 16766824 1255061 complement(3706095..3708281) 1 NC_003197.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; 1,4-alpha-glucan branching protein GlgB 3708281 glgB 1255061 glgB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1,4-alpha-glucan branching protein GlgB NP_462439.1 3706095 R 99287 CDS NP_462440.1 16766825 1255062 complement(3708628..3709734) 1 NC_003197.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 3709734 asd 1255062 asd Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aspartate-semialdehyde dehydrogenase NP_462440.1 3708628 R 99287 CDS NP_462442.1 16766827 1255064 complement(3710158..3711498) 1 NC_003197.1 low affinity gluconate transporter 3711498 gntU 1255064 gntU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 low affinity gluconate transporter NP_462442.1 3710158 R 99287 CDS NP_462443.1 16766828 1255065 complement(3711495..3712028) 1 NC_003197.1 thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase 3712028 gntK 1255065 gntK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 gluconate kinase NP_462443.1 3711495 R 99287 CDS NP_462444.1 16766829 1255066 complement(3712167..3713162) 1 NC_003197.1 gluconate operon transcriptional repressor 3713162 gntR 1255066 gntR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 gluconate operon transcriptional repressor NP_462444.1 3712167 R 99287 CDS NP_462445.1 16766830 1255067 complement(3713292..3713987) 1 NC_003197.1 cytoplasmic protein 3713987 yhhW 1255067 yhhW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462445.1 3713292 R 99287 CDS NP_462446.1 16766831 1255068 complement(3714111..3715148) 1 NC_003197.1 oxidoreductase 3715148 yhhX 1255068 yhhX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_462446.1 3714111 R 99287 CDS NP_462447.1 16766832 1255069 3715617..3716105 1 NC_003197.1 YhhY; regulated by the fur regulator; unknown function; acetyltransferase 3716105 yhhY 1255069 yhhY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyltransferase NP_462447.1 3715617 D 99287 CDS NP_462448.2 39546369 1255070 3716637..3717584 1 NC_003197.1 regulator of sugar metabolism; transcriptional regulator 3717584 1255070 STM3547.Sc Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_462448.2 3716637 D 99287 CDS NP_462449.1 16766834 1255071 3717600..3718361 1 NC_003197.1 cytoplasmic protein 3718361 1255071 STM3548 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462449.1 3717600 D 99287 CDS NP_462450.1 16766835 1255072 3718415..3719386 1 NC_003197.1 inner membrane protein 3719386 1255072 STM3549 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462450.1 3718415 D 99287 CDS NP_462451.1 16766836 1255073 3719383..3720417 1 NC_003197.1 phosphotriesterase 3720417 1255073 STM3550 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphotriesterase NP_462451.1 3719383 D 99287 CDS NP_462452.1 16766837 1255074 complement(3720462..3722204) 1 NC_003197.1 periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; gamma-glutamyltranspeptidase 3722204 ggt 1255074 ggt Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 gamma-glutamyltranspeptidase NP_462452.1 3720462 R 99287 CDS NP_462453.1 16766838 1255075 3722330..3722746 1 NC_003197.1 outer membrane protein 3722746 yhhA 1255075 yhhA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_462453.1 3722330 D 99287 CDS NP_462454.1 16766839 1255076 complement(3722759..3723499) 1 NC_003197.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase 3723499 ugpQ 1255076 ugpQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerophosphodiester phosphodiesterase NP_462454.1 3722759 R 99287 CDS NP_462455.1 16766840 1255077 complement(3723496..3724566) 1 NC_003197.1 part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate ABC transporter ATP-binding protein UgpC 3724566 ugpC 1255077 ugpC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerol-3-phosphate ABC transporter ATP-binding protein UgpC NP_462455.1 3723496 R 99287 CDS NP_462456.1 16766841 1255078 complement(3724568..3725413) 1 NC_003197.1 with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate ABC transporter permease UdpE 3725413 ugpE 1255078 ugpE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerol-3-phosphate ABC transporter permease UdpE NP_462456.1 3724568 R 99287 CDS NP_462457.1 16766842 1255079 complement(3725410..3726297) 1 NC_003197.1 with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate ABC transporter permease UdpA 3726297 ugpA 1255079 ugpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerol-3-phosphate ABC transporter permease UdpA NP_462457.1 3725410 R 99287 CDS NP_462458.1 16766843 1255080 complement(3726361..3727677) 1 NC_003197.1 with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate ABC transporter substrate-binding protein UdpB 3727677 ugpB 1255080 ugpB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerol-3-phosphate ABC transporter substrate-binding protein UdpB NP_462458.1 3726361 R 99287 CDS NP_462459.1 16766844 1255081 complement(3727936..3728304) 1 NC_003197.1 death-on-curing protein 3728304 1255081 STM3558 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 death-on-curing protein NP_462459.1 3727936 R 99287 CDS NP_462460.1 16766845 1255082 complement(3728301..3728528) 1 NC_003197.1 antitoxin YefM 3728528 yefM 1255082 yefM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 antitoxin YefM NP_462460.1 3728301 R 99287 CDS NP_462461.1 16766846 1255083 complement(3728654..3729367) 1 NC_003197.1 with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF 3729367 livF 1255083 livF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF NP_462461.1 3728654 R 99287 CDS NP_462462.1 16766847 1255084 complement(3729369..3730136) 1 NC_003197.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG 3730136 livG 1255084 livG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG NP_462462.1 3729369 R 99287 CDS NP_462463.1 16766848 1255085 complement(3730133..3731410) 1 NC_003197.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; high-affinity branched-chain amino acid ABC transporter permease LivM 3731410 livM 1255085 livM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 high-affinity branched-chain amino acid ABC transporter permease LivM NP_462463.1 3730133 R 99287 CDS NP_462464.1 16766849 1255086 complement(3731407..3732333) 1 NC_003197.1 LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; high-affinity branched-chain amino acid ABC transporter permease LivH 3732333 livH 1255086 livH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 high-affinity branched-chain amino acid ABC transporter permease LivH NP_462464.1 3731407 R 99287 CDS NP_462465.1 16766850 1255087 complement(3732393..3733502) 1 NC_003197.1 leucine-specific binding protein precursor; LS-BP (SW:LIVK_SALTY); ABC superfamily binding protein; high-affinity branched-chain amino acid ABC transporter leucine-binding protein LivL 3733502 livK 1255087 livK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 high-affinity branched-chain amino acid ABC transporter leucine-binding protein LivL NP_462465.1 3732393 R 99287 CDS NP_462466.1 16766851 1255088 3733924..3734307 1 NC_003197.1 acetyltransferase 3734307 yhhK 1255088 yhhK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyltransferase NP_462466.1 3733924 D 99287 CDS NP_462467.1 16766852 1255089 3734285..3734419 1 NC_003197.1 cytoplasmic protein 3734419 1255089 STM3566 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462467.1 3734285 D 99287 CDS NP_462468.1 16766853 1255090 complement(3734502..3735599) 1 NC_003197.1 leu/ile/val/thr-binding protein precursor; LIVT-BP (SW:LIVJ_SALTY); ABC superfamily binding protein; high-affinity branched-chain amino acid transporter substrate-binding protein LivJ 3735599 livJ 1255090 livJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 high-affinity branched-chain amino acid transporter substrate-binding protein LivJ NP_462468.1 3734502 R 99287 CDS NP_462469.1 16766854 1255091 complement(3735927..3736781) 1 NC_003197.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase sigma factor RpoH 3736781 rpoH 1255091 rpoH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNA polymerase sigma factor RpoH NP_462469.1 3735927 R 99287 CDS NP_462470.1 16766855 1255092 complement(3737027..3738082) 1 NC_003197.1 ABC transporter, membrane protein; cell division protein FtsX 3738082 ftsX 1255092 ftsX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division protein FtsX NP_462470.1 3737027 R 99287 CDS NP_462471.1 16766856 1255093 complement(3738075..3738743) 1 NC_003197.1 ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; cell division ATPase FtsE 3738743 ftsE 1255093 ftsE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division ATPase FtsE NP_462471.1 3738075 R 99287 CDS NP_462472.1 16766857 1255094 complement(3738746..3740221) 1 NC_003197.1 signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; aignal recognition particle receptor FtsY 3740221 ftsY 1255094 ftsY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aignal recognition particle receptor FtsY NP_462472.1 3738746 R 99287 CDS NP_462473.1 16766858 1255095 3740347..3740943 1 NC_003197.1 catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 3740943 rsmD 1255095 rsmD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 16S rRNA m(2)G966-methyltransferase NP_462473.1 3740347 D 99287 CDS NP_462474.2 308065952 1255096 3740933..3741202 1 NC_003197.1 inner membrane protein 3741202 yhhL 1255096 yhhL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462474.2 3740933 D 99287 CDS NP_462475.1 16766860 1255097 complement(3741224..3741595) 1 NC_003197.1 inner membrane protein 3741595 yhhM 1255097 yhhM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462475.1 3741224 R 99287 CDS NP_462476.1 16766861 1255098 3741737..3742363 1 NC_003197.1 inner membrane protein 3742363 yhhN 1255098 yhhN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462476.1 3741737 D 99287 CDS NP_462477.1 16766862 1255099 3742444..3744642 1 NC_003197.1 P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 3744642 zntA 1255099 zntA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 zinc/cadmium/mercury/lead-transporting ATPase NP_462477.1 3742444 D 99287 CDS NP_462478.1 16766863 1255100 3744842..3746485 1 NC_003197.1 methyl-accepting chemotaxis citrate transducer (citrate chemoreceptorprotein) (SW:MCPC_SALTY); methyl-accepting transmembrane citrate/phenol chemoreceptor 3746485 tcp 1255100 tcp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methyl-accepting transmembrane citrate/phenol chemoreceptor NP_462478.1 3744842 D 99287 CDS NP_462479.1 16766864 1255101 complement(3746509..3746754) 1 NC_003197.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; tRNA 2-thiouridine synthesizing protein TusA 3746754 tusA 1255101 tusA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA 2-thiouridine synthesizing protein TusA NP_462479.1 3746509 R 99287 CDS NP_462480.1 16766865 1255102 3746924..3747589 1 NC_003197.1 integral membrane protein 3747589 yhhQ 1255102 yhhQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integral membrane protein NP_462480.1 3746924 D 99287 CDS NP_462481.1 16766866 1255103 3747662..3748219 1 NC_003197.1 inner membrane lipoprotein 3748219 1255103 STM3580 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane lipoprotein NP_462481.1 3747662 D 99287 CDS NP_462482.2 39546370 1255104 complement(3748223..3749440) 1 NC_003197.1 major facilitator superfamily transporter 3749440 yhhS 1255104 yhhS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 major facilitator superfamily transporter NP_462482.2 3748223 R 99287 CDS NP_462483.1 16766868 1255105 3749572..3750621 1 NC_003197.1 PerM family; PerM family permease 3750621 yhhT 1255105 yhhT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PerM family permease NP_462483.1 3749572 D 99287 CDS NP_462484.1 16766869 1255106 3750673..3751251 1 NC_003197.1 4'-phosphopantetheinyl transferase AcpT 3751251 acpT 1255106 acpT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4'-phosphopantetheinyl transferase AcpT NP_462484.1 3750673 D 99287 CDS NP_462485.1 16766870 1255107 3751343..3751744 1 NC_003197.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3751744 nikR 1255107 nikR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nickel responsive regulator NP_462485.1 3751343 D 99287 CDS NP_462486.1 16766871 1255108 complement(3751834..3752958) 1 NC_003197.1 ABC transport ATP-binding protein 3752958 yhhJ 1255108 yhhJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transport ATP-binding protein NP_462486.1 3751834 R 99287 CDS NP_462487.2 39546371 1255109 complement(3752958..3755699) 1 NC_003197.1 multidrug ABC transporter ATPase 3755699 yhiH 1255109 yhiH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug ABC transporter ATPase NP_462487.2 3752958 R 99287 CDS NP_462488.1 16766873 1255110 complement(3755696..3756763) 1 NC_003197.1 membrane protein 3756763 yhiI 1255110 yhiI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane protein NP_462488.1 3755696 R 99287 CDS NP_462489.1 16766874 1255111 complement(3757069..3758265) 1 NC_003197.1 periplasmic protein 3758265 yhiN 1255111 yhiN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462489.1 3757069 R 99287 CDS NP_462490.1 16766875 1255112 3758496..3759992 1 NC_003197.1 low-affinity phosphate transporter 3759992 pitA 1255112 pitA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 low-affinity phosphate transporter NP_462490.1 3758496 D 99287 CDS NP_462491.1 16766876 1255113 complement(3760132..3760467) 1 NC_003197.1 ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein B 3760467 uspB 1255113 uspB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 universal stress protein B NP_462491.1 3760132 R 99287 CDS NP_462492.1 16766877 1255114 3760855..3761289 1 NC_003197.1 universal stress protein A 3761289 uspA 1255114 uspA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 universal stress protein A NP_462492.1 3760855 D 99287 CDS NP_462493.1 16766878 1255115 3761614..3763083 1 NC_003197.1 member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; dipeptide/tripeptide permease B 3763083 yhiP 1255115 yhiP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dipeptide/tripeptide permease B NP_462493.1 3761614 D 99287 CDS NP_462494.1 16766879 1255116 complement(3763175..3763933) 1 NC_003197.1 predicted SAM-dependent methyltransferase; rRNA small subunit methyltransferase J 3763933 rmsJ 1255116 rmsJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA small subunit methyltransferase J NP_462494.1 3763175 R 99287 CDS NP_462495.1 16766880 1255117 complement(3763940..3765982) 1 NC_003197.1 oligopeptidase A (SW:OPDA_SALTY); oligopeptidase A 3765982 prlC 1255117 prlC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oligopeptidase A NP_462495.1 3763940 R 99287 CDS NP_462496.1 16766881 1255118 complement(3766164..3767435) 1 NC_003197.1 phosphatase 3767435 1255118 STM3595 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphatase NP_462496.1 3766164 R 99287 CDS NP_462497.1 16766882 1255119 3767646..3768488 1 NC_003197.1 rRNA large subunit methyltransferase J 3768488 yhiR 1255119 yhiR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA large subunit methyltransferase J NP_462497.1 3767646 D 99287 CDS NP_462498.1 16766883 1255120 3768593..3769945 1 NC_003197.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione oxidoreductase 3769945 gor 1255120 gor Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione oxidoreductase NP_462498.1 3768593 D 99287 CDS NP_462499.1 16766884 1255121 complement(3769992..3771035) 1 NC_003197.1 L-asparaginase 3771035 1255121 STM3598 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-asparaginase NP_462499.1 3769992 R 99287 CDS NP_462500.1 16766885 1255122 complement(3771094..3772413) 1 NC_003197.1 anaerobic C4-dicarboxylate transporter 3772413 1255122 STM3599 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic C4-dicarboxylate transporter NP_462500.1 3771094 R 99287 CDS NP_462501.1 16766886 1255123 complement(3772467..3773312) 1 NC_003197.1 sugar kinase 3773312 1255123 STM3600 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar kinase NP_462501.1 3772467 R 99287 CDS NP_462502.1 16766887 1255124 complement(3773376..3774353) 1 NC_003197.1 phosphosugar isomerase 3774353 1255124 STM3601 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphosugar isomerase NP_462502.1 3773376 R 99287 CDS NP_462503.1 16766888 1255125 complement(3774529..3775248) 1 NC_003197.1 GntR family regulatory protein 3775248 1255125 STM3602 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GntR family regulatory protein NP_462503.1 3774529 R 99287 CDS NP_462504.1 16766889 1255126 3775574..3777223 1 NC_003197.1 cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 3777223 treF 1255126 treF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 trehalase NP_462504.1 3775574 D 99287 CDS NP_462505.1 16766890 1255127 complement(3777236..3778825) 1 NC_003197.1 inner membrane protein 3778825 1255127 STM3604 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462505.1 3777236 R 99287 CDS NP_462506.1 16766891 1255128 3779106..3779462 1 NC_003197.1 phage endolysin 3779462 1255128 STM3605 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage endolysin NP_462506.1 3779106 D 99287 CDS NP_462507.1 16766892 1255129 complement(3779468..3780070) 1 NC_003197.1 transcriptional regulator 3780070 yhjB 1255129 yhjB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_462507.1 3779468 R 99287 CDS NP_462508.1 16766893 1255130 3780701..3781600 1 NC_003197.1 LysR family transcriptional regulator 3781600 yhjC 1255130 yhjC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_462508.1 3780701 D 99287 CDS NP_462509.1 16766894 1255131 3781673..3782701 1 NC_003197.1 tRNA-processing ribonuclease 3782701 yhjD 1255131 yhjD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA-processing ribonuclease NP_462509.1 3781673 D 99287 CDS NP_462510.1 16766895 1255132 3783052..3784374 1 NC_003197.1 MFS family transport protein 3784374 yhjE 1255132 yhjE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family transport protein NP_462510.1 3783052 D 99287 CDS NP_462511.1 16766896 1255133 complement(3784414..3786474) 1 NC_003197.1 inner membrane protein 3786474 yhjG 1255133 yhjG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462511.1 3784414 R 99287 CDS NP_462512.1 16766897 1255134 complement(3786584..3787351) 1 NC_003197.1 in Escherichia coli this protein is involved in flagellar function; diguanylate cyclase/phosphodiesterase domain-containing protein 3787351 yhjH 1255134 yhjH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diguanylate cyclase/phosphodiesterase domain-containing protein NP_462512.1 3786584 R 99287 CDS NP_462513.1 16766898 1255135 3787580..3788509 1 NC_003197.1 ketodeoxygluconokinase 3788509 kdgK 1255135 kdgK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ketodeoxygluconokinase NP_462513.1 3787580 D 99287 CDS NP_462514.1 16766899 1255136 complement(3788563..3790050) 1 NC_003197.1 protein YhjJ (SW:YHJJ_SALTY); Zn-dependent peptidase 3790050 yhjJ 1255136 yhjJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Zn-dependent peptidase NP_462514.1 3788563 R 99287 CDS NP_462515.1 16766900 1255137 complement(3790270..3791556) 1 NC_003197.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter 3791556 dctA 1255137 dctA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 C4-dicarboxylate transporter NP_462515.1 3790270 R 99287 CDS NP_462516.2 409994440 1255138 complement(3791714..3793720) 1 NC_003197.1 HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a phosphodiesterase protein from E. coli; diguanylate cyclase/phosphodiesterase 3793720 yhjK 1255138 yhjK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diguanylate cyclase/phosphodiesterase NP_462516.2 3791714 R 99287 CDS NP_462517.1 16766902 1255139 complement(3793894..3797436) 1 NC_003197.1 cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC 3797436 yhjL 1255139 yhjL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cellulose synthase subunit BcsC NP_462517.1 3793894 R 99287 CDS NP_462518.1 16766903 1255140 complement(3797418..3798527) 1 NC_003197.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endoglucanase 3798527 1255140 STM3617 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 endoglucanase NP_462518.1 3797418 R 99287 CDS NP_462519.1 16766904 1255141 complement(3798531..3800831) 1 NC_003197.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 3800831 yhjN 1255141 yhjN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cellulose synthase regulator protein NP_462519.1 3798531 R 99287 CDS NP_462520.1 16766905 1255142 complement(3800842..3803466) 1 NC_003197.1 polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit 3803466 bcsA 1255142 bcsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cellulose synthase catalytic subunit NP_462520.1 3800842 R 99287 CDS NP_462521.1 16766906 1255143 complement(3803463..3804215) 1 NC_003197.1 cellulose biosynthesis protein BcsQ 3804215 bcsQ 1255143 bcsQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cellulose biosynthesis protein BcsQ NP_462521.1 3803463 R 99287 CDS NP_462522.1 16766907 1255144 complement(3804216..3804419) 1 NC_003197.1 cytoplasmic protein 3804419 yhjR 1255144 yhjR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462522.1 3804216 R 99287 CDS NP_462523.1 16766908 1255145 3804664..3806235 1 NC_003197.1 cellulose biosynthesis protein BcsE 3806235 yhjS 1255145 yhjS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cellulose biosynthesis protein BcsE NP_462523.1 3804664 D 99287 CDS NP_462524.1 16766909 1255146 3806232..3806423 1 NC_003197.1 cellulose biosynthesis protein BcsF 3806423 bcsF 1255146 bcsF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cellulose biosynthesis protein BcsF NP_462524.1 3806232 D 99287 CDS NP_462525.1 16766910 1255147 3806420..3808099 1 NC_003197.1 cellulose biosynthesis protein BcsG 3808099 bcsG 1255147 bcsG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cellulose biosynthesis protein BcsG NP_462525.1 3806420 D 99287 CDS NP_462526.1 16766911 1255148 3808673..3808813 1 NC_003197.1 cystathionine gamma-synthase 3808813 1255148 STM3624A Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cystathionine gamma-synthase NP_462526.1 3808673 D 99287 CDS NP_462527.1 16766912 1255149 3808931..3810229 1 NC_003197.1 HAAAP family transport protein 3810229 yhjV 1255149 yhjV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HAAAP family transport protein NP_462527.1 3808931 D 99287 CDS NP_462528.1 16766913 1255150 complement(3810330..3811343) 1 NC_003197.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide ABC transporter ATP-binding subunit DppF 3811343 dppF 1255150 dppF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dipeptide ABC transporter ATP-binding subunit DppF NP_462528.1 3810330 R 99287 CDS NP_462529.1 16766914 1255151 complement(3811340..3812323) 1 NC_003197.1 DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide ABC transporter ATP-binding subunit DppD 3812323 dppD 1255151 dppD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dipeptide ABC transporter ATP-binding subunit DppD NP_462529.1 3811340 R 99287 CDS NP_462530.1 16766915 1255152 complement(3812334..3813236) 1 NC_003197.1 dipeptide ABC transporter permease DppC 3813236 dppC 1255152 dppC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dipeptide ABC transporter permease DppC NP_462530.1 3812334 R 99287 CDS NP_462531.1 16766916 1255153 complement(3813246..3814265) 1 NC_003197.1 transports peptides consisting of two or three amino acids; dipeptide ABC transporter permease DppB 3814265 dppB 1255153 dppB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dipeptide ABC transporter permease DppB NP_462531.1 3813246 R 99287 CDS NP_462532.1 16766917 1255154 complement(3814422..3816029) 1 NC_003197.1 dipeptide ABC transporter substrate-binding protein DppA 3816029 dppA 1255154 dppA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dipeptide ABC transporter substrate-binding protein DppA NP_462532.1 3814422 R 99287 CDS NP_462533.1 16766918 1255155 complement(3816585..3817910) 1 NC_003197.1 xanthine permease 3817910 1255155 STM3631 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 xanthine permease NP_462533.1 3816585 R 99287 CDS NP_462534.1 16766919 1255156 complement(3817968..3819092) 1 NC_003197.1 contains PQQ enzyme repeat; hypothetical protein 3819092 1255156 STM3632 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462534.1 3817968 R 99287 CDS NP_462535.1 16766920 1255157 3819242..3820249 1 NC_003197.1 regulatory protein 3820249 1255157 STM3633 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_462535.1 3819242 D 99287 CDS NP_462536.1 16766921 1255159 complement(3820576..3822267) 1 NC_003197.1 catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase 3822267 yhjW 1255159 yhjW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoethanolamine transferase NP_462536.1 3820576 R 99287 CDS NP_462537.1 16766922 1255160 complement(3822485..3823012) 1 NC_003197.1 long polar fimbrial minor protein LpfE 3823012 lpfE 1255160 lpfE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 long polar fimbrial minor protein LpfE NP_462537.1 3822485 R 99287 CDS NP_462538.1 16766923 1255161 complement(3823018..3824097) 1 NC_003197.1 LpfD protein (SW:LPFD_SALTY); long polar fimbrial protein LpfD 3824097 lpfD 1255161 lpfD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 long polar fimbrial protein LpfD NP_462538.1 3823018 R 99287 CDS NP_462539.1 16766924 1255162 complement(3824115..3826643) 1 NC_003197.1 outer membrane usher protein LpfC (SW:LPFC_SALTY); long polar fimbrial outer membrane usher protein LfpC 3826643 lpfC 1255162 lpfC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 long polar fimbrial outer membrane usher protein LfpC NP_462539.1 3824115 R 99287 CDS NP_462540.1 16766925 1255163 complement(3826666..3827364) 1 NC_003197.1 chaperone protein LpfB (SW:LPFB_SALTY); long polar fimbrial chaperone protein LpfB 3827364 lpfB 1255163 lpfB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 long polar fimbrial chaperone protein LpfB NP_462540.1 3826666 R 99287 CDS NP_462541.1 16766926 1255164 complement(3827449..3827985) 1 NC_003197.1 long polar fimbrial protein A (SW:LPFA_SALTY); long polar fimbrial protein LpfA 3827985 lpfA 1255164 lpfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 long polar fimbrial protein LpfA NP_462541.1 3827449 R 99287 CDS NP_462542.1 16766927 1255165 complement(3828491..3829195) 1 NC_003197.1 lipase 3829195 yhjY 1255165 yhjY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipase NP_462542.1 3828491 R 99287 CDS NP_462543.1 16766928 1255166 3829352..3829933 1 NC_003197.1 constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine; 3-methyladenine DNA glycosylase 3829933 tag 1255166 tag Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-methyladenine DNA glycosylase NP_462543.1 3829352 D 99287 CDS NP_462544.1 16766929 1255167 3829911..3830351 1 NC_003197.1 acetyltransferase 3830351 yiaC 1255167 yiaC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyltransferase NP_462544.1 3829911 D 99287 CDS NP_462545.1 16766930 1255168 complement(3830320..3832653) 1 NC_003197.1 biotin sulfoxide reductase 3832653 bisC 1255168 bisC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 biotin sulfoxide reductase NP_462545.1 3830320 R 99287 CDS NP_462546.1 16766931 1255169 3832806..3833468 1 NC_003197.1 outer membrane lipoprotein 3833468 yiaD 1255169 yiaD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_462546.1 3832806 D 99287 CDS NP_462547.1 16766932 1255170 3833687..3834661 1 NC_003197.1 Involved in the metabolism of aromatic amino acids; glyoxylate/hydroxypyruvate reductase B 3834661 yiaE 1255170 yiaE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glyoxylate/hydroxypyruvate reductase B NP_462547.1 3833687 D 99287 CDS NP_462548.1 16766933 1255171 complement(3834711..3835421) 1 NC_003197.1 outer membrane lipoprotein 3835421 yiaF 1255171 yiaF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_462548.1 3834711 R 99287 CDS NP_462549.1 16766934 1255172 3835860..3836150 1 NC_003197.1 transcriptional regulator 3836150 yiaG 1255172 yiaG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_462549.1 3835860 D 99287 CDS NP_462550.1 16766935 1255173 3836439..3836651 1 NC_003197.1 cold shock protein CspA (SW:CSPA_SALTY); 7.4 kDa; transcriptional activator of hns; cold shock protein CspA 3836651 cspA 1255173 cspA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cold shock protein CspA NP_462550.1 3836439 D 99287 CDS NP_462551.1 16766936 1255174 3836825..3837364 1 NC_003197.1 hypothetical protein 3837364 1255174 STM3650 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462551.1 3836825 D 99287 CDS NP_462552.1 16766937 1255175 complement(3837736..3838221) 1 NC_003197.1 acetyltransferase 3838221 1255175 STM3651 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyltransferase NP_462552.1 3837736 R 99287 CDS NP_462553.1 16766938 1255176 complement(3838209..3838496) 1 NC_003197.1 cytoplasmic protein 3838496 1255176 STM3652 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462553.1 3838209 R 99287 CDS NP_462554.1 16766939 1255177 complement(3838674..3839141) 1 NC_003197.1 acetyltransferase 3839141 1255177 STM3653 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyltransferase NP_462554.1 3838674 R 99287 CDS NP_462555.1 16766940 1255179 complement(3839770..3841839) 1 NC_003197.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycine--tRNA ligase subunit beta 3841839 glyS 1255179 glyS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycine--tRNA ligase subunit beta NP_462555.1 3839770 R 99287 CDS NP_462556.1 16766941 1255180 complement(3841849..3842760) 1 NC_003197.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycine--tRNA ligase subunit alpha 3842760 glyQ 1255180 glyQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycine--tRNA ligase subunit alpha NP_462556.1 3841849 R 99287 CDS NP_462557.1 16766942 1255181 complement(3842899..3843201) 1 NC_003197.1 lipoprotein 3843201 1255181 STM3657 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein NP_462557.1 3842899 R 99287 CDS NP_462558.1 16766943 1255182 3843367..3844362 1 NC_003197.1 inner membrane protein 3844362 yiaH 1255182 yiaH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462558.1 3843367 D 99287 CDS NP_462559.1 16766944 1255183 complement(3844385..3844738) 1 NC_003197.1 inner membrane protein 3844738 yiaB 1255183 yiaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462559.1 3844385 R 99287 CDS NP_462560.1 16766945 1255184 complement(3844913..3846367) 1 NC_003197.1 xylulokinase 3846367 xylB 1255184 xylB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 xylulokinase NP_462560.1 3844913 R 99287 CDS NP_462561.1 16766946 1255185 complement(3846467..3847789) 1 NC_003197.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 3847789 xylA 1255185 xylA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 xylose isomerase NP_462561.1 3846467 R 99287 CDS NP_462562.1 16766947 1255186 3848152..3849330 1 NC_003197.1 xylose operon regulatory protein 3849330 xylR 1255186 xylR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 xylose operon regulatory protein NP_462562.1 3848152 D 99287 CDS NP_462563.1 16766948 1255187 complement(3849391..3850215) 1 NC_003197.1 hypothetical protein 3850215 1255187 STM3663 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462563.1 3849391 R 99287 CDS NP_462564.1 16766949 1255188 3850531..3852558 1 NC_003197.1 periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; alpha-amylase 3852558 malS 1255188 malS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alpha-amylase NP_462564.1 3850531 D 99287 CDS NP_462565.1 16766950 1255189 3852732..3853982 1 NC_003197.1 transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase 3853982 avtA 1255189 avtA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 valine--pyruvate transaminase NP_462565.1 3852732 D 99287 CDS NP_462566.1 16766951 1255190 complement(3854019..3854492) 1 NC_003197.1 oxidoreductase 3854492 ysaA 1255190 ysaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_462566.1 3854019 R 99287 CDS NP_462567.1 16766952 1255191 complement(3854609..3855409) 1 NC_003197.1 IclR family transcriptional repressor 3855409 yiaJ 1255191 yiaJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 IclR family transcriptional repressor NP_462567.1 3854609 R 99287 CDS NP_462568.1 16766953 1255192 3855639..3856637 1 NC_003197.1 NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; 2,3-diketo-L-gulonate reductase 3856637 yiaK 1255192 yiaK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2,3-diketo-L-gulonate reductase NP_462568.1 3855639 D 99287 CDS NP_462569.1 16766954 1255193 3856649..3857113 1 NC_003197.1 cytoplasmic protein 3857113 yiaL 1255193 yiaL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462569.1 3856649 D 99287 CDS NP_462570.1 16766955 1255194 3857137..3858069 1 NC_003197.1 hypothetical protein 3858069 1255194 STM3670 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462570.1 3857137 D 99287 CDS NP_462571.1 16766956 1255195 3858208..3858681 1 NC_003197.1 membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO; L-dehydroascorbate TRAP transporter small permease 3858681 yiaM 1255195 yiaM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-dehydroascorbate TRAP transporter small permease NP_462571.1 3858208 D 99287 CDS NP_462572.1 16766957 1255196 3858684..3859961 1 NC_003197.1 L-dehydroascorbate TRAP transporter large permease 3859961 yiaN 1255196 yiaN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-dehydroascorbate TRAP transporter large permease NP_462572.1 3858684 D 99287 CDS NP_462573.1 16766958 1255197 3859973..3860959 1 NC_003197.1 periplasmic dicarboxylate-binding protein 3860959 yiaO 1255197 yiaO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic dicarboxylate-binding protein NP_462573.1 3859973 D 99287 CDS NP_462574.1 16766959 1255198 3860963..3862459 1 NC_003197.1 cryptic L-xylulose kinase 3862459 lyxK 1255198 lyxK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cryptic L-xylulose kinase NP_462574.1 3860963 D 99287 CDS NP_462575.1 16766960 1255199 3862456..3863118 1 NC_003197.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 3863118 sgbH 1255199 sgbH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-keto-L-gulonate-6-phosphate decarboxylase NP_462575.1 3862456 D 99287 CDS NP_462576.1 16766961 1255200 3863111..3863971 1 NC_003197.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; 3-hexulose-6-phosphate isomerase 3863971 sgbU 1255200 sgbU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-hexulose-6-phosphate isomerase NP_462576.1 3863111 D 99287 CDS NP_462577.1 16766962 1255201 3863965..3864660 1 NC_003197.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 3864660 sgbE 1255201 sgbE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-ribulose-5-phosphate 4-epimerase NP_462577.1 3863965 D 99287 CDS NP_462578.1 16766963 1255202 complement(3864821..3865636) 1 NC_003197.1 regulatory protein 3865636 1255202 STM3678 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_462578.1 3864821 R 99287 CDS NP_462579.1 16766964 1255203 3865900..3867855 1 NC_003197.1 cytoplasmic protein 3867855 1255203 STM3679 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462579.1 3865900 D 99287 CDS NP_462580.1 16766965 1255204 complement(3867973..3869511) 1 NC_003197.1 aldehyde dehydrogenase B 3869511 aldB 1255204 aldB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aldehyde dehydrogenase B NP_462580.1 3867973 R 99287 CDS NP_462581.1 16766966 1255205 3869680..3870561 1 NC_003197.1 transcriptional regulator 3870561 1255205 STM3681 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_462581.1 3869680 D 99287 CDS NP_462582.1 16766967 1255206 complement(3870846..3872696) 1 NC_003197.1 selenocysteinyl-tRNA-specific translation factor 3872696 selB 1255206 selB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 selenocysteinyl-tRNA-specific translation factor NP_462582.1 3870846 R 99287 CDS NP_462583.1 16766968 1255207 complement(3872693..3874084) 1 NC_003197.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; L-seryl-tRNA(Sec) selenium transferase 3874084 selA 1255207 selA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-seryl-tRNA(Sec) selenium transferase NP_462583.1 3872693 R 99287 CDS NP_462584.1 16766969 1255208 complement(3874183..3874791) 1 NC_003197.1 glutathione S-transferase 3874791 yibF 1255208 yibF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione S-transferase NP_462584.1 3874183 R 99287 CDS NP_462585.1 16766970 1255209 3875267..3877183 1 NC_003197.1 PTS system mannitol-specific transporter subunit IIABC 3877183 mtlA 1255209 mtlA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannitol-specific transporter subunit IIABC NP_462585.1 3875267 D 99287 CDS NP_462586.1 16766971 1255210 3877404..3878552 1 NC_003197.1 mannitol-1-phosphate 5-dehydrogenase 3878552 mtlD 1255210 mtlD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mannitol-1-phosphate 5-dehydrogenase NP_462586.1 3877404 D 99287 CDS NP_462587.1 16766972 1255211 3878549..3879139 1 NC_003197.1 Acts as a repressor of the mtlAD operon; mannitol repressor protein 3879139 mtlR 1255211 mtlR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mannitol repressor protein NP_462587.1 3878549 D 99287 CDS NP_462588.1 16766973 1255212 complement(3879149..3879358) 1 NC_003197.1 hypothetical protein 3879358 1255212 STM3688 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462588.1 3879149 R 99287 CDS NP_462589.1 16766974 1255213 3879649..3880011 1 NC_003197.1 cytoplasmic protein 3880011 yibL 1255213 yibL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462589.1 3879649 D 99287 CDS NP_462590.1 16766975 1255214 3880501..3881184 1 NC_003197.1 inner membrane lipoprotein 3881184 1255214 STM3690 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane lipoprotein NP_462590.1 3880501 D 99287 CDS NP_462591.1 16766976 1255215 3881228..3885613 1 NC_003197.1 trimeric autotransporter adhesin 3885613 1255215 STM3691 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 trimeric autotransporter adhesin NP_462591.1 3881228 D 99287 CDS NP_462592.1 16766977 1255216 3885912..3887567 1 NC_003197.1 L-lactate permease 3887567 lldP 1255216 lldP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-lactate permease NP_462592.1 3885912 D 99287 CDS NP_462593.1 16766978 1255217 3887564..3888340 1 NC_003197.1 represses the lctPRD operon; DNA-binding transcriptional repressor LldR 3888340 lldR 1255217 lldR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional repressor LldR NP_462593.1 3887564 D 99287 CDS NP_462594.1 16766979 1255218 3888337..3889527 1 NC_003197.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 3889527 lldD 1255218 lldD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-lactate dehydrogenase NP_462594.1 3888337 D 99287 CDS NP_462595.1 16766980 1255219 3889591..3890064 1 NC_003197.1 member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; tRNA (cytidine(34)-2'-O)-methyltransferase 3890064 yibK 1255219 yibK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA (cytidine(34)-2'-O)-methyltransferase NP_462595.1 3889591 D 99287 CDS NP_462596.1 16766981 1255220 complement(3890132..3891136) 1 NC_003197.1 transcriptional regulator 3891136 1255220 STM3696 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_462596.1 3890132 R 99287 CDS NP_462597.1 16766982 1255221 3891455..3892651 1 NC_003197.1 mandelate racemase 3892651 1255221 STM3697 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mandelate racemase NP_462597.1 3891455 D 99287 CDS NP_462598.1 16766983 1255222 3892725..3894035 1 NC_003197.1 permease 3894035 1255222 STM3698 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_462598.1 3892725 D 99287 CDS NP_462599.1 16766984 1255223 complement(3894118..3894939) 1 NC_003197.1 catalyzes the O-acetylation of serine; serine acetyltransferase 3894939 cysE 1255223 cysE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 serine acetyltransferase NP_462599.1 3894118 R 99287 CDS NP_462600.1 16766985 1255224 complement(3895017..3896036) 1 NC_003197.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; glycerol-3-phosphate dehydrogenase 3896036 gpsA 1255224 gpsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerol-3-phosphate dehydrogenase NP_462600.1 3895017 R 99287 CDS NP_462601.1 16766986 1255225 complement(3896036..3896503) 1 NC_003197.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; protein-export protein SecB 3896503 secB 1255225 secB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protein-export protein SecB NP_462601.1 3896036 R 99287 CDS NP_462602.1 16766987 1255226 complement(3896547..3896798) 1 NC_003197.1 glutaredoxin 3 3896798 grxC 1255226 grxC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutaredoxin 3 NP_462602.1 3896547 R 99287 CDS NP_462603.1 16766988 1255227 complement(3896885..3897316) 1 NC_003197.1 rhodanese-like sulfurtransferase 3897316 yibN 1255227 yibN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rhodanese-like sulfurtransferase NP_462603.1 3896885 R 99287 CDS NP_462604.1 16766989 1255228 3897564..3899108 1 NC_003197.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 3899108 pmgI 1255228 pmgI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase NP_462604.1 3897564 D 99287 CDS NP_462605.1 16766990 1255229 3899118..3900401 1 NC_003197.1 membrane protein 3900401 yibP 1255229 yibP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane protein NP_462605.1 3899118 D 99287 CDS NP_462606.1 16766991 1255230 3900405..3901367 1 NC_003197.1 periplasmic protein 3901367 yigQ 1255230 yigQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462606.1 3900405 D 99287 CDS NP_462607.1 16766992 1255231 complement(3901354..3902388) 1 NC_003197.1 glycosyl transferase 3902388 yibD 1255231 yibD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyl transferase NP_462607.1 3901354 R 99287 CDS NP_462608.1 16766993 1255232 complement(3902882..3903907) 1 NC_003197.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 3903907 tdh 1255232 tdh Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-threonine 3-dehydrogenase NP_462608.1 3902882 R 99287 CDS NP_462609.1 16766994 1255233 complement(3903917..3905113) 1 NC_003197.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 3905113 kbl 1255233 kbl Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-amino-3-ketobutyrate coenzyme A ligase NP_462609.1 3903917 R 99287 CDS NP_462610.1 16766995 1255234 3905316..3906248 1 NC_003197.1 catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 3906248 rfaD 1255234 rfaD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ADP-L-glycero-D-manno-heptose-6-epimerase NP_462610.1 3905316 D 99287 CDS NP_462611.1 16766996 1255235 3906251..3907297 1 NC_003197.1 catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose--LPS heptosyltransferase 3907297 rfaF 1255235 rfaF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ADP-heptose--LPS heptosyltransferase NP_462611.1 3906251 D 99287 CDS NP_462612.1 16766997 1255236 3907297..3908250 1 NC_003197.1 lipopolysaccharide heptosyltransferase-1 (SW:RFAC_SALTY); ADP-heptose--LPS heptosyltransferase 3908250 rfaC 1255236 rfaC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ADP-heptose--LPS heptosyltransferase NP_462612.1 3907297 D 99287 CDS NP_462613.1 16766998 1255237 3908290..3909504 1 NC_003197.1 O-antigen ligase (SW:RFAL_SALTY); O-antigen ligase 3909504 rfaL 1255237 rfaL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 O-antigen ligase NP_462613.1 3908290 D 99287 CDS NP_462614.1 16766999 1255238 complement(3909561..3910706) 1 NC_003197.1 lipopolysaccharide 1,2-N-acetylglucosaminetransferase (SW:RFAK_SALTY); lipopolysaccharide core biosynthetic protein; lipopolysaccharide 1,2-N-acetylglucosaminetransferase 3910706 rfaK 1255238 rfaK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipopolysaccharide 1,2-N-acetylglucosaminetransferase NP_462614.1 3909561 R 99287 CDS NP_462615.1 16767000 1255239 complement(3910807..3911616) 1 NC_003197.1 lipopolysaccharide core biosynthetic protein RfaZ (SW:RFAZ_SALTY); lipopolysaccharide core biosynthesis protein RfaZ 3911616 rfaZ 1255239 rfaZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipopolysaccharide core biosynthesis protein RfaZ NP_462615.1 3910807 R 99287 CDS NP_462616.1 16767001 1255240 complement(3911766..3912464) 1 NC_003197.1 lipopolysaccharide core biosynthesis protein RfaY (SW:RFAY_SALTY); modification of heptose region of the core; lipopolysaccharide core heptose(II) kinase RfaY 3912464 rfaY 1255240 rfaY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipopolysaccharide core heptose(II) kinase RfaY NP_462616.1 3911766 R 99287 CDS NP_462617.1 16767002 1255241 complement(3912487..3913497) 1 NC_003197.1 UDP-D-glucose/galactosyl; lipopolysaccharide 1,2-glucosyltransferase (SW:RFAJ_SALTY); lipopolysaccharide 1,2-glucosyltransferase 3913497 rfaJ 1255241 rfaJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipopolysaccharide 1,2-glucosyltransferase NP_462617.1 3912487 R 99287 CDS NP_462618.1 16767003 1255242 complement(3913515..3914528) 1 NC_003197.1 UDP-D-galactose/glucosyl; lipopolysaccharide 1,3-galactosyltransferase (SW:RFAI_SALTY); lipopolysaccharide 1,3-galactosyltransferase 3914528 rfaI 1255242 rfaI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipopolysaccharide 1,3-galactosyltransferase NP_462618.1 3913515 R 99287 CDS NP_462619.1 16767004 1255243 complement(3914534..3915613) 1 NC_003197.1 UDP-D-galactose/(glucosyl; lipopolysaccharide 1,6-galactosyltransferase (SW:RFAB_SALTY); lipopolysaccharide 1,6-galactosyltransferase 3915613 rfaB 1255243 rfaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipopolysaccharide 1,6-galactosyltransferase NP_462619.1 3914534 R 99287 CDS NP_462620.1 16767005 1255244 complement(3915683..3915916) 1 NC_003197.1 hypothetical 9.0 kDa protein in rfaB-rfaP intergenic region (SW:YIBR_SALTY); hypothetical protein 3915916 1255244 STM3720 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462620.1 3915683 R 99287 CDS NP_462621.1 16767006 1255245 complement(3915948..3916745) 1 NC_003197.1 lipopolysaccharide core biosynthetic protein RfaP (SW:RFAP_SALTY); phosphorylation of core heptose; lipopolysaccharide core heptose(I) kinase RfaP 3916745 rfaP 1255245 rfaP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipopolysaccharide core heptose(I) kinase RfaP NP_462621.1 3915948 R 99287 CDS NP_462622.1 16767007 1255246 complement(3916738..3917862) 1 NC_003197.1 glucosyltransferase I 3917862 rfaG 1255246 rfaG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucosyltransferase I NP_462622.1 3916738 R 99287 CDS NP_462623.1 16767008 1255247 complement(3917859..3918893) 1 NC_003197.1 lipopolysaccharide core biosynthesis protein 3918893 rfaQ 1255247 rfaQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipopolysaccharide core biosynthesis protein NP_462623.1 3917859 R 99287 CDS NP_462624.1 16767009 1255248 3919338..3920615 1 NC_003197.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 3920615 kdtA 1255248 kdtA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-deoxy-D-manno-octulosonic-acid transferase NP_462624.1 3919338 D 99287 CDS NP_462625.1 16767010 1255249 3920624..3921103 1 NC_003197.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3921103 coaD 1255249 coaD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphopantetheine adenylyltransferase NP_462625.1 3920624 D 99287 CDS NP_462626.1 16767011 1255250 complement(3921131..3921940) 1 NC_003197.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 3921940 mutM 1255250 mutM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formamidopyrimidine-DNA glycosylase NP_462626.1 3921131 R 99287 CDS NP_462627.1 16767012 1255251 complement(3922038..3922205) 1 NC_003197.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3922205 rpmG 1255251 rpmG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L33 NP_462627.1 3922038 R 99287 CDS NP_462628.1 16767013 1255252 complement(3922226..3922462) 1 NC_003197.1 required for 70S ribosome assembly; 50S ribosomal protein L28 3922462 rpmB 1255252 rpmB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L28 NP_462628.1 3922226 R 99287 CDS NP_462629.1 16767014 1255253 complement(3922680..3923345) 1 NC_003197.1 hypothetical protein 3923345 1255253 STM3729 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462629.1 3922680 R 99287 CDS NP_462630.2 161353581 1255254 3923521..3924741 1 NC_003197.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3924741 dfp 1255254 dfp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase NP_462630.2 3923521 D 99287 CDS NP_462631.1 16767016 1255255 3924722..3925177 1 NC_003197.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 3925177 dut 1255255 dut Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 deoxyuridine 5'-triphosphate nucleotidohydrolase NP_462631.1 3924722 D 99287 CDS NP_462632.1 16767017 1255256 3925285..3925881 1 NC_003197.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein SlmA 3925881 slmA 1255256 slmA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleoid occlusion protein SlmA NP_462632.1 3925285 D 99287 CDS NP_462633.1 16767018 1255257 complement(3925959..3926600) 1 NC_003197.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 3926600 pyrE 1255257 pyrE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 orotate phosphoribosyltransferase NP_462633.1 3925959 R 99287 CDS NP_462634.1 16767019 1255258 complement(3926679..3927395) 1 NC_003197.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 3927395 rph 1255258 rph Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonuclease PH NP_462634.1 3926679 R 99287 CDS NP_462635.1 16767020 1255259 3927521..3928384 1 NC_003197.1 hypothetical protein 3928384 1255259 STM3735 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462635.1 3927521 D 99287 CDS NP_462636.1 16767021 1255260 complement(3928434..3929336) 1 NC_003197.1 LysR family transcriptional regulator 3929336 1255260 STM3736 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_462636.1 3928434 R 99287 CDS NP_462637.1 16767022 1255261 3929410..3930291 1 NC_003197.1 Zn-dependent hydrolase 3930291 1255261 STM3737 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Zn-dependent hydrolase NP_462637.1 3929410 D 99287 CDS NP_462638.1 16767023 1255262 3930542..3931159 1 NC_003197.1 inner membrane protein 3931159 yigC 1255262 yigC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462638.1 3930542 D 99287 CDS NP_462639.1 16767024 1255263 complement(3931156..3932841) 1 NC_003197.1 this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; DNA ligase LigB 3932841 ligB 1255263 ligB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA ligase LigB NP_462639.1 3931156 R 99287 CDS NP_462640.1 16767025 1255264 3933098..3933721 1 NC_003197.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 3933721 gmk 1255264 gmk Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 guanylate kinase NP_462640.1 3933098 D 99287 CDS NP_462641.1 16767026 1255265 3933776..3934051 1 NC_003197.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3934051 rpoZ 1255265 rpoZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-directed RNA polymerase subunit omega NP_462641.1 3933776 D 99287 CDS NP_462642.1 16767027 1255266 3934070..3936181 1 NC_003197.1 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3936181 spoT 1255266 spoT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase NP_462642.1 3934070 D 99287 CDS NP_462643.1 16767028 1255267 3936186..3936875 1 NC_003197.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3936875 spoU 1255267 spoU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA guanosine-2'-O-methyltransferase NP_462643.1 3936186 D 99287 CDS NP_462644.1 16767029 1255268 3936881..3938962 1 NC_003197.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3938962 recG 1255268 recG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent DNA helicase RecG NP_462644.1 3936881 D 99287 CDS NP_462645.1 16767030 1255269 complement(3938965..3939816) 1 NC_003197.1 cytoplasmic protein 3939816 1255269 STM3745 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462645.1 3938965 R 99287 CDS NP_462646.1 16767031 1255270 complement(3939819..3941024) 1 NC_003197.1 GltS family glutamate transport protein 3941024 gltS 1255270 gltS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GltS family glutamate transport protein NP_462646.1 3939819 R 99287 CDS NP_462647.1 16767032 1255271 3941252..3942643 1 NC_003197.1 NCS2 family purine/xanthine transport protein 3942643 yicE 1255271 yicE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NCS2 family purine/xanthine transport protein NP_462647.1 3941252 D 99287 CDS NP_462648.1 16767033 1255272 3942764..3944473 1 NC_003197.1 inner membrane protein 3944473 yicH 1255272 yicH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462648.1 3942764 D 99287 CDS NP_462649.1 16767034 1255273 complement(3944576..3946894) 1 NC_003197.1 catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase 3946894 yicI 1255273 yicI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alpha-xylosidase NP_462649.1 3944576 R 99287 CDS NP_462650.1 16767035 1255274 complement(3946906..3948288) 1 NC_003197.1 may be involved in the transport of galactosides-pentoses-hexuronides; GPH family transport protein 3948288 yicJ 1255274 yicJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GPH family transport protein NP_462650.1 3946906 R 99287 CDS NP_462651.1 16767036 1255276 complement(3948987..3949331) 1 NC_003197.1 cytoplasmic protein 3949331 1255276 STM3752 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462651.1 3948987 R 99287 CDS NP_462652.1 16767037 1255277 3950009..3951199 1 NC_003197.1 ATP-binding protein 3951199 sugR 1255277 sugR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-binding protein NP_462652.1 3950009 D 99287 CDS NP_462653.1 16767038 1255278 3951196..3951546 1 NC_003197.1 cytoplasmic protein 3951546 1255278 STM3754 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462653.1 3951196 D 99287 CDS NP_462654.1 16767039 1255279 3951733..3952770 1 NC_003197.1 RhuM; cytoplasmic protein 3952770 rhuM 1255279 rhuM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462654.1 3951733 D 99287 CDS NP_462655.1 16767040 1255280 3954069..3954686 1 NC_003197.1 RmbA; cytoplasmic protein 3954686 rmbA 1255280 rmbA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462655.1 3954069 D 99287 CDS NP_462656.1 16767041 1255281 3954761..3957628 1 NC_003197.1 autotransported protein 3957628 misL 1255281 misL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 autotransported protein NP_462656.1 3954761 D 99287 CDS NP_462657.1 16767042 1255282 complement(3957723..3958187) 1 NC_003197.1 FidL; inner membrane protein 3958187 fidL 1255282 fidL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462657.1 3957723 R 99287 CDS NP_462658.3 409994441 1255283 complement(3958198..3958962) 1 NC_003197.1 transcriptional regulator 3958962 marT 1255283 marT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_462658.3 3958198 R 99287 CDS NP_462660.1 16767045 1255285 3959839..3960519 1 NC_003197.1 inner membrane protein 3960519 1255285 STM3761 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462660.1 3959839 D 99287 CDS NP_462661.1 16767046 1255286 complement(3960748..3961227) 1 NC_003197.1 CigR; inner membrane protein 3961227 cigR 1255286 cigR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462661.1 3960748 R 99287 CDS NP_462662.1 16767047 1255287 complement(3961542..3964268) 1 NC_003197.1 Mg(2+) transport ATPase, P-type 2 (SW:ATMB_SALTY); cotranscribed with mgtC; magnesium-transporting ATPase 3964268 mgtB 1255287 mgtB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 magnesium-transporting ATPase NP_462662.1 3961542 R 99287 CDS NP_462663.1 16767048 1255288 complement(3964488..3965183) 1 NC_003197.1 Mg(2+) transport ATPase protein C (SW:ATMC_SALTY); reqired for intracmacrophage survival and growth in low calcium; cotranscribed with mgtB and transcriptionally controlled by PhoP/PhoQ system; protein MgtC 3965183 mgtC 1255288 mgtC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protein MgtC NP_462663.1 3964488 R 99287 CDS NP_462664.1 16767049 1255289 3965692..3966594 1 NC_003197.1 inner membrane transporter 3966594 yicL 1255289 yicL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane transporter NP_462664.1 3965692 D 99287 CDS NP_462665.1 16767050 1255290 complement(3966637..3967578) 1 NC_003197.1 cytoplasmic protein 3967578 1255290 STM3766 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462665.1 3966637 R 99287 CDS NP_462666.1 16767051 1255291 complement(3967814..3968557) 1 NC_003197.1 cytoplasmic protein 3968557 1255291 STM3767 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462666.1 3967814 R 99287 CDS NP_462667.1 16767052 1255292 complement(3968544..3969653) 1 NC_003197.1 L-seryl-tRNA selenium transferase; selenocysteine synthase 3969653 1255292 STM3768 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 selenocysteine synthase NP_462667.1 3968544 R 99287 CDS NP_462668.2 39546373 1255293 complement(3969657..3970514) 1 NC_003197.1 PTS system mannose-specific transporter subunit IID 3970514 1255293 STM3769.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannose-specific transporter subunit IID NP_462668.2 3969657 R 99287 CDS NP_462669.1 16767054 1255294 complement(3970514..3971263) 1 NC_003197.1 PTS system mannose-specific transporter subunit IIC 3971263 1255294 STM3770 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannose-specific transporter subunit IIC NP_462669.1 3970514 R 99287 CDS NP_462670.1 16767055 1255295 complement(3971409..3971894) 1 NC_003197.1 PTS system mannose-specific transporter subunit IIB 3971894 1255295 STM3771 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannose-specific transporter subunit IIB NP_462670.1 3971409 R 99287 CDS NP_462671.1 16767056 1255296 complement(3971905..3972330) 1 NC_003197.1 PTS system mannose-specific transporter subunit IIA 3972330 1255296 STM3772 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannose-specific transporter subunit IIA NP_462671.1 3971905 R 99287 CDS NP_462672.1 16767057 1255297 complement(3972549..3975347) 1 NC_003197.1 NtrC family transcriptional regulator 3975347 1255297 STM3773 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NtrC family transcriptional regulator NP_462672.1 3972549 R 99287 CDS NP_462673.1 16767058 1255298 3975544..3975837 1 NC_003197.1 hypothetical protein 3975837 1255298 STM3774 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462673.1 3975544 D 99287 CDS NP_462674.1 16767059 1255299 3975943..3977325 1 NC_003197.1 glycosyl hydrolase family protein 3977325 1255299 STM3775 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyl hydrolase family protein NP_462674.1 3975943 D 99287 CDS NP_462675.1 16767060 1255300 complement(3977385..3978578) 1 NC_003197.1 experimental results in Escherichia coli suggest that this gene encodes an inosine export protein; member of major facilitator superfamily; MFS; purine ribonucleoside efflux pump NepI 3978578 nepI 1255300 nepI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 purine ribonucleoside efflux pump NepI NP_462675.1 3977385 R 99287 CDS NP_462676.1 16767061 1255301 3978794..3979153 1 NC_003197.1 cytoplasmic protein 3979153 1255301 STM3777 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462676.1 3978794 D 99287 CDS NP_462677.1 16767062 1255302 3979137..3979460 1 NC_003197.1 helix-turn-helix; DNA-binding protein 3979460 1255302 STM3778 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding protein NP_462677.1 3979137 D 99287 CDS NP_462678.1 16767063 1255303 complement(3979551..3979820) 1 NC_003197.1 PTS system phosphocarrier protein HPr 3979820 1255303 STM3779 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system phosphocarrier protein HPr NP_462678.1 3979551 R 99287 CDS NP_462679.1 16767064 1255304 complement(3979830..3980690) 1 NC_003197.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 3980690 gatY 1255304 gatY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fructose-1,6-bisphosphate aldolase NP_462679.1 3979830 R 99287 CDS NP_462680.1 16767065 1255305 complement(3980753..3982237) 1 NC_003197.1 sugar kinase 3982237 1255305 STM3781 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar kinase NP_462680.1 3980753 R 99287 CDS NP_462681.1 16767066 1255306 complement(3982230..3983588) 1 NC_003197.1 PTS system mannitol/fructose-specific transporter subunit IIC 3983588 1255306 STM3782 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannitol/fructose-specific transporter subunit IIC NP_462681.1 3982230 R 99287 CDS NP_462682.1 16767067 1255307 complement(3983664..3983951) 1 NC_003197.1 PTS system mannitol/fructose-specific transporter subunit IIB 3983951 1255307 STM3783 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannitol/fructose-specific transporter subunit IIB NP_462682.1 3983664 R 99287 CDS NP_462683.1 16767068 1255308 complement(3983948..3984421) 1 NC_003197.1 PTS system mannitol/fructose-specific transporter subunit IIA 3984421 1255308 STM3784 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannitol/fructose-specific transporter subunit IIA NP_462683.1 3983948 R 99287 CDS NP_462684.1 16767069 1255309 complement(3984439..3985182) 1 NC_003197.1 GntR family regulatory protein 3985182 1255309 STM3785 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GntR family regulatory protein NP_462684.1 3984439 R 99287 CDS NP_462685.1 16767070 1255310 complement(3985535..3985987) 1 NC_003197.1 inner membrane protein 3985987 yicN 1255310 yicN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462685.1 3985535 R 99287 CDS NP_462686.1 16767071 1255311 complement(3986180..3987571) 1 NC_003197.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; hexose phosphate transport protein 3987571 uhpT 1255311 uhpT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hexose phosphate transport protein NP_462686.1 3986180 R 99287 CDS NP_462687.1 16767072 1255312 complement(3987714..3989042) 1 NC_003197.1 membrane protein regulates uhpT expression; regulatory protein UhpC 3989042 uhpC 1255312 uhpC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein UhpC NP_462687.1 3987714 R 99287 CDS NP_462688.1 16767073 1255313 complement(3989052..3990554) 1 NC_003197.1 Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensor protein UhpB 3990554 uhpB 1255313 uhpB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensor protein UhpB NP_462688.1 3989052 R 99287 CDS NP_462689.1 16767074 1255314 complement(3990554..3991144) 1 NC_003197.1 response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; transcriptional regulator UhpA 3991144 uhpA 1255314 uhpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator UhpA NP_462689.1 3990554 R 99287 CDS NP_462690.1 16767075 1255315 complement(3991219..3992232) 1 NC_003197.1 cytoplasmic protein 3992232 1255315 STM3791 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462690.1 3991219 R 99287 CDS NP_462691.1 16767076 1255316 complement(3992244..3993560) 1 NC_003197.1 L-fucose permease 3993560 1255316 STM3792 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-fucose permease NP_462691.1 3992244 R 99287 CDS NP_462692.1 16767077 1255317 complement(3993591..3994511) 1 NC_003197.1 sugar kinase 3994511 1255317 STM3793 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar kinase NP_462692.1 3993591 R 99287 CDS NP_462693.1 16767078 1255318 3994836..3995621 1 NC_003197.1 DeoR family regulatory protein 3995621 1255318 STM3794 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DeoR family regulatory protein NP_462693.1 3994836 D 99287 CDS NP_462694.1 16767079 1255319 complement(3995623..3995913) 1 NC_003197.1 with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit 3995913 ilvN 1255319 ilvN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetolactate synthase 1 regulatory subunit NP_462694.1 3995623 R 99287 CDS NP_462695.1 16767080 1255320 complement(3995917..3997605) 1 NC_003197.1 catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase catalytic subunit 3997605 ilvB 1255320 ilvB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetolactate synthase catalytic subunit NP_462695.1 3995917 R 99287 CDS NP_462696.1 16767081 1255321 complement(3997712..3997810) 1 NC_003197.1 ilvB operon leader peptide 3997810 ivbL 1255321 ivbL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ilvB operon leader peptide NP_462696.1 3997712 R 99287 CDS NP_462698.2 39546374 1255324 3998653..3999486 1 NC_003197.1 integral membrane protein 3999486 1255324 STM3796A.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integral membrane protein NP_462698.2 3998653 D 99287 CDS NP_462699.1 16767084 1255325 3999689..4000873 1 NC_003197.1 multidrug efflux protein involved in adaptation to low energy shock; MFS family multidrug tranport protein 4000873 emrD 1255325 emrD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family multidrug tranport protein NP_462699.1 3999689 D 99287 CDS NP_462700.1 16767085 1255326 complement(4000800..4001885) 1 NC_003197.1 periplasmic protein 4001885 1255326 STM3799 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462700.1 4000800 R 99287 CDS NP_462701.1 16767086 1255327 complement(4001949..4002872) 1 NC_003197.1 regulates the synthesis and expression of the dsdXA operon and dadA gene; LysR family transcriptional activator 4002872 dsdC 1255327 dsdC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional activator NP_462701.1 4001949 R 99287 CDS NP_462702.1 16767087 1255328 4003098..4004435 1 NC_003197.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 4004435 dsdX 1255328 dsdX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease DsdX NP_462702.1 4003098 D 99287 CDS NP_462703.1 16767088 1255329 4004453..4005775 1 NC_003197.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 4005775 dsdA 1255329 dsdA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-serine dehydratase NP_462703.1 4004453 D 99287 CDS NP_462704.1 16767089 1255330 complement(4005857..4006387) 1 NC_003197.1 cytoplasmic protein 4006387 yidF 1255330 yidF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462704.1 4005857 R 99287 CDS NP_462705.1 16767090 1255331 complement(4006384..4006746) 1 NC_003197.1 inner membrane protein 4006746 yidG 1255331 yidG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462705.1 4006384 R 99287 CDS NP_462706.1 16767091 1255332 complement(4006736..4007083) 1 NC_003197.1 inner membrane protein 4007083 yidH 1255332 yidH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462706.1 4006736 R 99287 CDS NP_462707.1 16767092 1255334 complement(4007527..4009188) 1 NC_003197.1 transport protein YidE 4009188 yidE 1255334 yidE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transport protein YidE NP_462707.1 4007527 R 99287 CDS NP_462708.3 161353566 1255335 complement(4009378..4009806) 1 NC_003197.1 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; heat shock protein IbpB 4009806 ibpB 1255335 ibpB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 heat shock protein IbpB NP_462708.3 4009378 R 99287 CDS NP_462709.3 228960701 1255336 complement(4009916..4010329) 1 NC_003197.1 with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA 4010329 ibpA 1255336 ibpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 heat shock protein IbpA NP_462709.3 4009916 R 99287 CDS NP_462710.1 16767095 1255337 4010636..4010971 1 NC_003197.1 outer membrane lipoprotein 4010971 yidQ 1255337 yidQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_462710.1 4010636 D 99287 CDS NP_462711.1 16767096 1255338 complement(4010973..4012199) 1 NC_003197.1 cytoplasmic protein 4012199 yidR 1255338 yidR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462711.1 4010973 R 99287 CDS NP_462712.1 16767097 1255339 complement(4012321..4013364) 1 NC_003197.1 heme lyase subunit 4013364 ccmH 1255339 ccmH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 heme lyase subunit NP_462712.1 4012321 R 99287 CDS NP_462713.1 16767098 1255340 complement(4013361..4013918) 1 NC_003197.1 Thiol:disulfide interchange protein DsbE; cytochrome c biogenesis protein CcmG 4013918 ccmG 1255340 ccmG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome c biogenesis protein CcmG NP_462713.1 4013361 R 99287 CDS NP_462714.1 16767099 1255341 complement(4013915..4015846) 1 NC_003197.1 cytochrome c-type biogenesis protein CcmF 4015846 ccmF 1255341 ccmF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome c-type biogenesis protein CcmF NP_462714.1 4013915 R 99287 CDS NP_462715.1 16767100 1255342 complement(4015843..4016322) 1 NC_003197.1 cytochrome c-type biogenesis protein CcmE 4016322 ccmE 1255342 ccmE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome c-type biogenesis protein CcmE NP_462715.1 4015843 R 99287 CDS NP_462716.1 16767101 1255343 complement(4016319..4016531) 1 NC_003197.1 heme exporter protein CcmD 4016531 ccmD 1255343 ccmD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 heme exporter protein CcmD NP_462716.1 4016319 R 99287 CDS NP_462717.1 16767102 1255344 complement(4016528..4017265) 1 NC_003197.1 heme exporter protein CcmC 4017265 ccmC 1255344 ccmC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 heme exporter protein CcmC NP_462717.1 4016528 R 99287 CDS NP_462718.1 16767103 1255345 complement(4017317..4017976) 1 NC_003197.1 heme exporter protein CcmC 4017976 ccmB 1255345 ccmB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 heme exporter protein CcmC NP_462718.1 4017317 R 99287 CDS NP_462719.1 16767104 1255346 complement(4017973..4018590) 1 NC_003197.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis ATP-binding export protein CcmA 4018590 ccmA 1255346 ccmA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome c biogenesis ATP-binding export protein CcmA NP_462719.1 4017973 R 99287 CDS NP_462720.1 16767105 1255347 complement(4018596..4019996) 1 NC_003197.1 cytochrome c peroxidase 4019996 1255347 STM3820 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome c peroxidase NP_462720.1 4018596 R 99287 CDS NP_462721.1 16767106 1255348 complement(4020186..4020818) 1 NC_003197.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 4020818 torD 1255348 torD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone protein TorD NP_462721.1 4020186 R 99287 CDS NP_462722.1 16767107 1255349 complement(4020811..4023363) 1 NC_003197.1 trimethylamine N-oxide reductase 4023363 torA 1255349 torA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 trimethylamine N-oxide reductase NP_462722.1 4020811 R 99287 CDS NP_462723.1 16767108 1255350 complement(4023353..4024537) 1 NC_003197.1 trimethylamine N-oxide reductase cytochrome c-like subunit 4024537 torC 1255350 torC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 trimethylamine N-oxide reductase cytochrome c-like subunit NP_462723.1 4023353 R 99287 CDS NP_462724.1 16767109 1255351 4024667..4025359 1 NC_003197.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; response regulator TorR 4025359 torR 1255351 torR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 response regulator TorR NP_462724.1 4024667 D 99287 CDS NP_462725.1 16767110 1255352 complement(4025332..4026372) 1 NC_003197.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; periplasmic sensor TorT 4026372 torT 1255352 torT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic sensor TorT NP_462725.1 4025332 R 99287 CDS NP_462726.1 16767111 1255353 4026452..4029187 1 NC_003197.1 Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; sensory kinase TorS 4029187 torS 1255353 torS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensory kinase TorS NP_462726.1 4026452 D 99287 CDS NP_462727.1 16767112 1255354 complement(4029213..4030550) 1 NC_003197.1 MFS family D-galactonate transport protein 4030550 dgoT 1255354 dgoT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family D-galactonate transport protein NP_462727.1 4029213 R 99287 CDS NP_462728.1 16767113 1255355 complement(4030635..4031783) 1 NC_003197.1 galactonate dehydratase 4031783 dgoA 1255355 dgoA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 galactonate dehydratase NP_462728.1 4030635 R 99287 CDS NP_462729.1 16767114 1255356 complement(4032380..4033258) 1 NC_003197.1 2-oxo-3-deoxygalactonate kinase 4033258 dgoK 1255356 dgoK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-oxo-3-deoxygalactonate kinase NP_462729.1 4032380 R 99287 CDS NP_462730.1 16767115 1255357 complement(4033255..4033944) 1 NC_003197.1 galactonate operon transcriptional repressor 4033944 dgoR 1255357 dgoR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 galactonate operon transcriptional repressor NP_462730.1 4033255 R 99287 CDS NP_462731.1 16767116 1255358 complement(4034205..4035050) 1 NC_003197.1 YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; sugar phosphatase 4035050 yidA 1255358 yidA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar phosphatase NP_462731.1 4034205 R 99287 CDS NP_462732.1 16767117 1255359 4035356..4036618 1 NC_003197.1 permease 4036618 1255359 STM3832 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_462732.1 4035356 D 99287 CDS NP_462733.1 16767118 1255360 4036632..4037825 1 NC_003197.1 mandelate racemase 4037825 1255360 STM3833 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mandelate racemase NP_462733.1 4036632 D 99287 CDS NP_462734.1 16767119 1255361 4037940..4038836 1 NC_003197.1 LysR family transcriptional regulator 4038836 1255361 STM3834 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_462734.1 4037940 D 99287 CDS NP_462735.1 16767120 1255362 complement(4038855..4041269) 1 NC_003197.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4041269 gyrB 1255362 gyrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA gyrase subunit B NP_462735.1 4038855 R 99287 CDS NP_462736.1 16767121 1255363 complement(4041298..4042371) 1 NC_003197.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; DNA replication/repair protein RecF 4042371 recF 1255363 recF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA replication/repair protein RecF NP_462736.1 4041298 R 99287 CDS NP_462737.1 16767122 1255364 complement(4042519..4043619) 1 NC_003197.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 4043619 dnaN 1255364 dnaN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase III subunit beta NP_462737.1 4042519 R 99287 CDS NP_462738.1 16767123 1255365 complement(4043624..4045024) 1 NC_003197.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein DnaA 4045024 dnaA 1255365 dnaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosomal replication initiation protein DnaA NP_462738.1 4043624 R 99287 CDS NP_462739.1 16767124 1255366 4045685..4045825 1 NC_003197.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4045825 rpmH 1255366 rpmH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L34 NP_462739.1 4045685 D 99287 CDS NP_462740.1 16767125 1255367 4045842..4046201 1 NC_003197.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P protein 4046201 rnpA 1255367 rnpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonuclease P protein NP_462740.1 4045842 D 99287 CDS NP_462741.1 16767126 1255368 4046165..4046422 1 NC_003197.1 membrane protein insertion efficiency factor 4046422 1255368 STM3841 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane protein insertion efficiency factor NP_462741.1 4046165 D 99287 CDS NP_462742.1 16767127 1255369 4046425..4048071 1 NC_003197.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; membrane protein insertase YidC 4048071 yidC 1255369 yidC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane protein insertase YidC NP_462742.1 4046425 D 99287 CDS NP_462743.1 16767128 1255370 4048213..4049577 1 NC_003197.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase mnmE 4049577 mnmE 1255370 mnmE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA modification GTPase mnmE NP_462743.1 4048213 D 99287 CDS NP_462744.1 16767129 1255372 4051378..4052340 1 NC_003197.1 inner membrane protein 4052340 1255372 STM3845 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462744.1 4051378 D 99287 CDS NP_462745.2 39546377 1255373 4052340..4053275 1 NC_003197.1 RNA-dependent DNA polymerase; reverse transcriptase 4053275 1255373 STM3846.s Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 reverse transcriptase NP_462745.2 4052340 D 99287 CDS NP_462746.1 16767131 1255374 4054077..4055264 1 NC_003197.1 Confers resistance to chloramphenicol; multidrug resistance protein MdtL 4055264 yidY 1255374 yidY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug resistance protein MdtL NP_462746.1 4054077 D 99287 CDS NP_462747.1 16767132 1255375 4055233..4056192 1 NC_003197.1 Involved in anaerobic NO protection; HTH-type transcriptional regulator YidZ 4056192 yidZ 1255375 yidZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator YidZ NP_462747.1 4055233 D 99287 CDS NP_462748.1 16767133 1255376 4056350..4057105 1 NC_003197.1 cytoplasmic protein 4057105 yieE 1255376 yieE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462748.1 4056350 D 99287 CDS NP_462749.2 161353580 1255377 4057123..4057689 1 NC_003197.1 oxidoreductase 4057689 yieF 1255377 yieF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_462749.2 4057123 D 99287 CDS NP_462750.2 39546378 1255378 complement(4057734..4059071) 1 NC_003197.1 xanthine/uracil permease 4059071 yieG 1255378 yieG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 xanthine/uracil permease NP_462750.2 4057734 R 99287 CDS NP_462751.1 16767136 1255379 4059240..4059905 1 NC_003197.1 YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; bifunctional phosphoenolpyruvate/6-phosphogluconate phosphatase 4059905 yieH 1255379 yieH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional phosphoenolpyruvate/6-phosphogluconate phosphatase NP_462751.1 4059240 D 99287 CDS NP_462752.1 16767137 1255380 complement(4060000..4060725) 1 NC_003197.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 4060725 phoU 1255380 phoU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator PhoU NP_462752.1 4060000 R 99287 CDS NP_462753.1 16767138 1255381 complement(4060740..4061513) 1 NC_003197.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein PstB 4061513 pstB 1255381 pstB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphate ABC transporter ATP-binding protein PstB NP_462753.1 4060740 R 99287 CDS NP_462754.1 16767139 1255382 complement(4061600..4062490) 1 NC_003197.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate ABC transporter permease subunit PtsA 4062490 pstA 1255382 pstA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphate ABC transporter permease subunit PtsA NP_462754.1 4061600 R 99287 CDS NP_462755.1 16767140 1255383 complement(4062490..4063449) 1 NC_003197.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate ABC transporter permease PstC 4063449 pstC 1255383 pstC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphate ABC transporter permease PstC NP_462755.1 4062490 R 99287 CDS NP_462756.1 16767141 1255384 complement(4063585..4064625) 1 NC_003197.1 phosphate ABC transporter substrate-binding protein PstS 4064625 pstS 1255384 pstS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphate ABC transporter substrate-binding protein PstS NP_462756.1 4063585 R 99287 CDS NP_462757.1 16767142 1255385 complement(4064792..4066165) 1 NC_003197.1 PTS system fructose-specific transporter subunit IIBC 4066165 1255385 STM3858 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system fructose-specific transporter subunit IIBC NP_462757.1 4064792 R 99287 CDS NP_462758.1 16767143 1255386 complement(4066214..4067032) 1 NC_003197.1 catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 4067032 aroE 1255386 aroE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 shikimate 5-dehydrogenase NP_462758.1 4066214 R 99287 CDS NP_462759.1 16767144 1255387 4067127..4068884 1 NC_003197.1 dipeptide/oligopeptide/nickel ABC transporter substrate-binding protein 4068884 1255387 STM3860 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dipeptide/oligopeptide/nickel ABC transporter substrate-binding protein NP_462759.1 4067127 D 99287 CDS NP_462760.1 16767145 1255388 complement(4069035..4070864) 1 NC_003197.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 4070864 glmS 1255388 glmS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucosamine--fructose-6-phosphate aminotransferase NP_462760.1 4069035 R 99287 CDS NP_462761.1 16767146 1255389 complement(4071053..4072423) 1 NC_003197.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 4072423 glmU 1255389 glmU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase NP_462761.1 4071053 R 99287 CDS NP_462762.1 16767147 1255390 complement(4072743..4073441) 1 NC_003197.1 permease 4073441 1255390 STM3863 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_462762.1 4072743 R 99287 CDS NP_462763.1 16767148 1255391 complement(4073671..4074090) 1 NC_003197.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 4074090 atpC 1255391 atpC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 F0F1 ATP synthase subunit epsilon NP_462763.1 4073671 R 99287 CDS NP_462764.1 16767149 1255392 complement(4074111..4075493) 1 NC_003197.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 4075493 atpD 1255392 atpD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 F0F1 ATP synthase subunit beta NP_462764.1 4074111 R 99287 CDS NP_462765.1 16767150 1255393 complement(4075520..4076383) 1 NC_003197.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 4076383 atpG 1255393 atpG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 F0F1 ATP synthase subunit gamma NP_462765.1 4075520 R 99287 CDS NP_462766.1 16767151 1255394 complement(4076434..4077975) 1 NC_003197.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 4077975 atpA 1255394 atpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 F0F1 ATP synthase subunit alpha NP_462766.1 4076434 R 99287 CDS NP_462767.1 16767152 1255395 complement(4077988..4078521) 1 NC_003197.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 4078521 atpH 1255395 atpH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 F0F1 ATP synthase subunit delta NP_462767.1 4077988 R 99287 CDS NP_462768.1 16767153 1255396 complement(4078536..4079006) 1 NC_003197.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 4079006 atpF 1255396 atpF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 F0F1 ATP synthase subunit B NP_462768.1 4078536 R 99287 CDS NP_462769.1 16767154 1255397 complement(4079066..4079305) 1 NC_003197.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 4079305 atpE 1255397 atpE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 F0F1 ATP synthase subunit C NP_462769.1 4079066 R 99287 CDS NP_462770.1 16767155 1255398 complement(4079352..4080167) 1 NC_003197.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 4080167 atpB 1255398 atpB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 F0F1 ATP synthase subunit A NP_462770.1 4079352 R 99287 CDS NP_462771.1 16767156 1255399 complement(4080176..4080556) 1 NC_003197.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 4080556 atpI 1255399 atpI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 F0F1 ATP synthase subunit I NP_462771.1 4080176 R 99287 CDS NP_462772.3 308065943 1255400 complement(4081172..4081795) 1 NC_003197.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; rRNA small subunit methyltransferase 4081795 gidB 1255400 gidB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA small subunit methyltransferase NP_462772.3 4081172 R 99287 CDS NP_462773.1 16767158 1255401 complement(4081898..4083787) 1 NC_003197.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 4083787 gidA 1255401 gidA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA NP_462773.1 4081898 R 99287 CDS NP_462774.1 16767159 1255402 complement(4084166..4084609) 1 NC_003197.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; FMN-binding protein 4084609 mioC 1255402 mioC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 FMN-binding protein NP_462774.1 4084166 R 99287 CDS NP_462775.1 16767160 1255403 complement(4084699..4085157) 1 NC_003197.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 4085157 asnC 1255403 asnC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional regulator AsnC NP_462775.1 4084699 R 99287 CDS NP_462776.1 16767161 1255404 4085308..4086300 1 NC_003197.1 catalyzes the formation of asparagine from aspartate and ammonia; aspartate--ammonia ligase 4086300 asnA 1255404 asnA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aspartate--ammonia ligase NP_462776.1 4085308 D 99287 CDS NP_462777.2 39546380 1255405 complement(4086305..4087756) 1 NC_003197.1 contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; protein ViaA 4087756 viaA 1255405 viaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protein ViaA NP_462777.2 4086305 R 99287 CDS NP_462778.1 16767163 1255406 complement(4087750..4089246) 1 NC_003197.1 interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; ATPase RavA 4089246 yieN 1255406 yieN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATPase RavA NP_462778.1 4087750 R 99287 CDS NP_462779.1 16767164 1255407 4089594..4091462 1 NC_003197.1 Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 4091462 trkD 1255407 trkD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 potassium transport protein Kup NP_462779.1 4089594 D 99287 CDS NP_462780.1 16767165 1255408 4091659..4092078 1 NC_003197.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 4092078 rbsD 1255408 rbsD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-ribose pyranase NP_462780.1 4091659 D 99287 CDS NP_462781.1 16767166 1255409 4092086..4093591 1 NC_003197.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose ABC transporter ATP-binding protein RbsA 4093591 rbsA 1255409 rbsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-ribose ABC transporter ATP-binding protein RbsA NP_462781.1 4092086 D 99287 CDS NP_462782.1 16767167 1255410 4093597..4094562 1 NC_003197.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease RbsC 4094562 rbsC 1255410 rbsC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribose ABC transporter permease RbsC NP_462782.1 4093597 D 99287 CDS NP_462783.1 16767168 1255411 4094587..4095477 1 NC_003197.1 periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose ABC transporter substrate-binding protein RbsB 4095477 rbsB 1255411 rbsB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-ribose ABC transporter substrate-binding protein RbsB NP_462783.1 4094587 D 99287 CDS NP_462784.1 16767169 1255412 4095611..4096540 1 NC_003197.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 4096540 rbsK 1255412 rbsK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribokinase NP_462784.1 4095611 D 99287 CDS NP_462785.1 16767170 1255413 4096544..4097542 1 NC_003197.1 DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 4097542 rbsR 1255413 rbsR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional repressor RbsR NP_462785.1 4096544 D 99287 CDS NP_462786.1 16767171 1255414 complement(4097508..4098935) 1 NC_003197.1 MFS family tranport protein 4098935 yieO 1255414 yieO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MFS family tranport protein NP_462786.1 4097508 R 99287 CDS NP_462787.1 16767172 1255415 complement(4098947..4099651) 1 NC_003197.1 GntR family; GntR family regulatory protein 4099651 yieP 1255415 yieP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GntR family regulatory protein NP_462787.1 4098947 R 99287 CDS NP_462788.2 308065951 1255423 complement(4105545..4106381) 1 NC_003197.1 Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; HTH-type transcriptional regulator HdfR 4106381 yifA 1255423 yifA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator HdfR NP_462788.2 4105545 R 99287 CDS NP_462789.1 16767174 1255424 4106500..4106838 1 NC_003197.1 LysR type regulator; with pssR; hypothetical protein 4106838 1255424 STM3898 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462789.1 4106500 D 99287 CDS NP_462790.1 16767175 1255425 complement(4106863..4108383) 1 NC_003197.1 among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; ATP-dependent protease 4108383 yifB 1255425 yifB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent protease NP_462790.1 4106863 R 99287 CDS NP_462791.1 16767176 1255426 4108735..4108833 1 NC_003197.1 ilvGmedA operon leader peptide; attenuator peptide (SW:LPID_ECOLI); ilvG operon leader peptide 4108833 ilvL 1255426 ilvL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ilvG operon leader peptide NP_462791.1 4108735 D 99287 CDS NP_462792.1 16767177 1255427 4108973..4110619 1 NC_003197.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4110619 ilvG 1255427 ilvG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetolactate synthase 2 catalytic subunit NP_462792.1 4108973 D 99287 CDS NP_462793.2 308065950 1255428 4110616..4110879 1 NC_003197.1 acetolactate synthase 2 regulatory subunit 4110879 ilvM 1255428 ilvM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetolactate synthase 2 regulatory subunit NP_462793.2 4110616 D 99287 CDS NP_462794.1 16767179 1255429 4110897..4111826 1 NC_003197.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4111826 ilvE 1255429 ilvE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 branched-chain amino acid aminotransferase NP_462794.1 4110897 D 99287 CDS NP_462795.1 16767180 1255430 4111987..4113837 1 NC_003197.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4113837 ilvD 1255430 ilvD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dihydroxy-acid dehydratase NP_462795.1 4111987 D 99287 CDS NP_462796.1 16767181 1255431 4113840..4115384 1 NC_003197.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase IlvA 4115384 ilvA 1255431 ilvA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 threonine dehydratase IlvA NP_462796.1 4113840 D 99287 CDS NP_462797.1 16767182 1255432 4115668..4115985 1 NC_003197.1 cytoplasmic protein 4115985 1255432 STM3906 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462797.1 4115668 D 99287 CDS NP_462798.1 16767183 1255433 4115982..4116323 1 NC_003197.1 cytoplasmic protein 4116323 1255433 STM3907 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462798.1 4115982 D 99287 CDS NP_462799.1 16767184 1255434 complement(4116326..4117213) 1 NC_003197.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; HTH-type transcriptional regulator IlvY 4117213 ilvY 1255434 ilvY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator IlvY NP_462799.1 4116326 R 99287 CDS NP_462800.1 16767185 1255435 4117377..4118852 1 NC_003197.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 4118852 ilvC 1255435 ilvC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ketol-acid reductoisomerase NP_462800.1 4117377 D 99287 CDS NP_462801.1 16767186 1255436 complement(4118944..4119225) 1 NC_003197.1 peptidyl-prolyl cis-trans isomerase C 4119225 ppiC 1255436 ppiC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidyl-prolyl cis-trans isomerase C NP_462801.1 4118944 R 99287 CDS NP_462802.1 16767187 1255437 4119514..4119663 1 NC_003197.1 inner membrane protein 4119663 1255437 STM3911 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462802.1 4119514 D 99287 CDS NP_462803.1 16767188 1255438 4119763..4121787 1 NC_003197.1 single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 4121787 rep 1255438 rep Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent DNA helicase Rep NP_462803.1 4119763 D 99287 CDS NP_462804.1 16767189 1255439 complement(4121827..4123308) 1 NC_003197.1 catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase 4123308 gppA 1255439 gppA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase NP_462804.1 4121827 R 99287 CDS NP_462805.1 16767190 1255440 complement(4123427..4124692) 1 NC_003197.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 4124692 rhlB 1255440 rhlB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent RNA helicase RhlB NP_462805.1 4123427 R 99287 CDS NP_462806.1 16767191 1255441 4124836..4125165 1 NC_003197.1 thioredoxin 1; TRX1; TRX (SW:THIO_ECOLI); redox factor; thioredoxin 4125165 trxA 1255441 trxA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thioredoxin NP_462806.1 4124836 D 99287 CDS NP_462807.1 16767192 1255443 4125584..4126843 1 NC_003197.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4126843 rho 1255443 rho Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcription termination factor Rho NP_462807.1 4125584 D 99287 CDS NP_462808.1 16767193 1255444 4127073..4128176 1 NC_003197.1 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 4128176 rfe 1255444 rfe Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase NP_462808.1 4127073 D 99287 CDS NP_462809.1 16767194 1255445 4128188..4129234 1 NC_003197.1 Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4129234 wzzE 1255445 wzzE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipopolysaccharide biosynthesis protein WzzE NP_462809.1 4128188 D 99287 CDS NP_462810.1 16767195 1255446 4129290..4130420 1 NC_003197.1 UDP-N-acetyl glucosamine 2-epimerase 4130420 wecB 1255446 wecB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-N-acetyl glucosamine 2-epimerase NP_462810.1 4129290 D 99287 CDS NP_462811.1 16767196 1255447 4130417..4131679 1 NC_003197.1 catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4131679 wecC 1255447 wecC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-N-acetyl-D-mannosamine dehydrogenase NP_462811.1 4130417 D 99287 CDS NP_462812.1 16767197 1255448 4131679..4132746 1 NC_003197.1 dTDP-glucose 4,6-dehydratase 4132746 rffG 1255448 rffG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dTDP-glucose 4,6-dehydratase NP_462812.1 4131679 D 99287 CDS NP_462813.1 16767198 1255449 4132779..4133003 1 NC_003197.1 glucose-1-phosphate thymidylyltransferase 4133003 rffH 1255449 rffH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucose-1-phosphate thymidylyltransferase NP_462813.1 4132779 D 99287 CDS NP_462814.2 308065949 1255450 4132981..4133658 1 NC_003197.1 TDP-fucosamine acetyltransferase 4133658 wecD 1255450 wecD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 TDP-fucosamine acetyltransferase NP_462814.2 4132981 D 99287 CDS NP_462815.1 16767200 1255451 4133663..4134793 1 NC_003197.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4134793 wecE 1255451 wecE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 TDP-4-oxo-6-deoxy-D-glucose transaminase NP_462815.1 4133663 D 99287 CDS NP_462816.1 16767201 1255452 4134795..4136045 1 NC_003197.1 O-antigen translocase 4136045 wzxE 1255452 wzxE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 O-antigen translocase NP_462816.1 4134795 D 99287 CDS NP_462817.1 16767202 1255453 4136042..4137121 1 NC_003197.1 catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4137121 1255453 STM3927 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-alpha-L-fucosyltransferase NP_462817.1 4136042 D 99287 CDS NP_462818.1 16767203 1255454 4137118..4138476 1 NC_003197.1 enterobacterial common antigen polymerase; ECA polymerase 4138476 wecF 1255454 wecF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ECA polymerase NP_462818.1 4137118 D 99287 CDS NP_462819.1 16767204 1255455 4138473..4139213 1 NC_003197.1 probable UDP-N-acetyl-D-mannosaminuronic acid transferase (SW:WECG_SALTY); UDP-N-acetyl-D-mannosaminuronic acid transferase 4139213 wecG 1255455 wecG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-N-acetyl-D-mannosaminuronic acid transferase NP_462819.1 4138473 D 99287 CDS NP_462820.1 16767205 1255456 4139420..4140805 1 NC_003197.1 uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; transporter 4140805 yifK 1255456 yifK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transporter NP_462820.1 4139420 D 99287 CDS NP_462821.1 16767206 1255461 complement(4141922..4143121) 1 NC_003197.1 protoheme IX biogenesis protein 4143121 hemY 1255461 hemY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protoheme IX biogenesis protein NP_462821.1 4141922 R 99287 CDS NP_462822.1 16767207 1255462 complement(4143121..4144290) 1 NC_003197.1 uroporphyrinogen III C-methyltransferase 4144290 hemX 1255462 hemX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 uroporphyrinogen III C-methyltransferase NP_462822.1 4143121 R 99287 CDS NP_462823.1 16767208 1255463 complement(4144312..4145052) 1 NC_003197.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 4145052 hemD 1255463 hemD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 uroporphyrinogen-III synthase NP_462823.1 4144312 R 99287 CDS NP_462824.1 16767209 1255464 complement(4145049..4146005) 1 NC_003197.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4146005 hemC 1255464 hemC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 porphobilinogen deaminase NP_462824.1 4145049 R 99287 CDS NP_462825.1 16767210 1255465 4146367..4148913 1 NC_003197.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4148913 cyaA 1255465 cyaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 adenylate cyclase NP_462825.1 4146367 D 99287 CDS NP_462826.1 16767211 1255466 4149021..4149374 1 NC_003197.1 inner membrane protein 4149374 1255466 STM3940 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462826.1 4149021 D 99287 CDS NP_462827.1 16767212 1255467 4149560..4150102 1 NC_003197.1 inner membrane protein 4150102 1255467 STM3941 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462827.1 4149560 D 99287 CDS NP_462828.1 16767213 1255468 4150114..4150476 1 NC_003197.1 cytoplasmic protein 4150476 1255468 STM3942 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462828.1 4150114 D 99287 CDS NP_462829.1 16767214 1255469 complement(4150547..4150867) 1 NC_003197.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 4150867 cyaY 1255469 cyaY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 frataxin-like protein NP_462829.1 4150547 R 99287 CDS NP_462830.1 16767215 1255470 complement(4150937..4151326) 1 NC_003197.1 inner membrane protein 4151326 1255470 STM3944 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462830.1 4150937 R 99287 CDS NP_462831.1 16767216 1255472 4152022..4152225 1 NC_003197.1 lipoprotein 4152225 yifL 1255472 yifL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoprotein NP_462831.1 4152022 D 99287 CDS NP_462832.2 161353579 1255473 4152262..4153086 1 NC_003197.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4153086 dapF 1255473 dapF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diaminopimelate epimerase NP_462832.2 4152262 D 99287 CDS NP_462833.1 16767218 1255474 4153083..4153790 1 NC_003197.1 hypothetical protein in dapF-xerC intergenic region (SW:YIGA_SALTY); hypothetical protein 4153790 1255474 STM3948 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462833.1 4153083 D 99287 CDS NP_462834.1 16767219 1255475 4153787..4154689 1 NC_003197.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; tyrosine recombinase XerC 4154689 xerC 1255475 xerC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tyrosine recombinase XerC NP_462834.1 4153787 D 99287 CDS NP_462835.1 16767220 1255476 4154689..4155405 1 NC_003197.1 YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4155405 yigB 1255476 yigB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 flavin mononucleotide phosphatase NP_462835.1 4154689 D 99287 CDS NP_462836.1 16767221 1255477 4155541..4157703 1 NC_003197.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4157703 uvrD 1255477 uvrD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-dependent helicase II NP_462836.1 4155541 D 99287 CDS NP_462837.1 16767222 1255478 4158175..4159125 1 NC_003197.1 responsible for the influx of magnesium ions; magnesium transport protein CorA 4159125 corA 1255478 corA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 magnesium transport protein CorA NP_462837.1 4158175 D 99287 CDS NP_462838.1 16767223 1255479 complement(4159174..4159554) 1 NC_003197.1 hypothetical 14.6 kDa protein in corA-rarD intergenic region (SW:YIGF_SALTY); hypothetical protein 4159554 1255479 STM3953 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462838.1 4159174 R 99287 CDS NP_462839.1 16767224 1255480 complement(4159570..4160028) 1 NC_003197.1 inner membrane protein 4160028 yigG 1255480 yigG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462839.1 4159570 R 99287 CDS NP_462840.1 16767225 1255481 complement(4160063..4160947) 1 NC_003197.1 chloramphenicol resistance permease 4160947 rarD 1255481 rarD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chloramphenicol resistance permease NP_462840.1 4160063 R 99287 CDS NP_462841.2 161353578 1255482 complement(4160991..4161458) 1 NC_003197.1 hypothetical protein in rarD-pldA intergenic region (SW:YIGI_SALTY); possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein 4161458 1255482 STM3956 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462841.2 4160991 R 99287 CDS NP_462842.1 16767227 1255483 4161623..4162492 1 NC_003197.1 catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4162492 pldA 1255483 pldA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phospholipase A NP_462842.1 4161623 D 99287 CDS NP_462843.1 16767228 1255484 4162558..4164405 1 NC_003197.1 functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ 4164405 recQ 1255484 recQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent DNA helicase RecQ NP_462843.1 4162558 D 99287 CDS NP_462844.1 16767229 1255485 4164469..4165089 1 NC_003197.1 RhtB family; threonine efflux protein 4165089 rhtC 1255485 rhtC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 threonine efflux protein NP_462844.1 4164469 D 99287 CDS NP_462845.1 16767230 1255486 complement(4165129..4165749) 1 NC_003197.1 homoserine/homoserine lactone efflux protein 4165749 rhtB 1255486 rhtB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 homoserine/homoserine lactone efflux protein NP_462845.1 4165129 R 99287 CDS NP_462846.1 16767231 1255487 4165860..4166876 1 NC_003197.1 lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4166876 pldB 1255487 pldB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lysophospholipase L2 NP_462846.1 4165860 D 99287 CDS NP_462847.1 16767232 1255488 4166892..4167692 1 NC_003197.1 purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium; HAD superfamily hydrolase 4167692 yigL 1255488 yigL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HAD superfamily hydrolase NP_462847.1 4166892 D 99287 CDS NP_462848.1 16767233 1255489 4167773..4168672 1 NC_003197.1 membrane protein 4168672 yigM 1255489 yigM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane protein NP_462848.1 4167773 D 99287 CDS NP_462849.1 16767234 1255490 complement(4168560..4169513) 1 NC_003197.1 transcriptional activator protein metR (SW:METR_SALTY); LysR family; HTH-type transcriptional regulator MetR 4169513 metR 1255490 metR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator MetR NP_462849.1 4168560 R 99287 CDS NP_462850.1 16767235 1255491 4169762..4172026 1 NC_003197.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 4172026 metE 1255491 metE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase NP_462850.1 4169762 D 99287 CDS NP_462851.1 16767236 1255492 4172370..4173713 1 NC_003197.1 arylsulfatase regulator 4173713 1255492 STM3966 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arylsulfatase regulator NP_462851.1 4172370 D 99287 CDS NP_462852.1 16767237 1255493 complement(4173793..4174605) 1 NC_003197.1 carboxymethylenebutenolidase 4174605 dlhH 1255493 dlhH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carboxymethylenebutenolidase NP_462852.1 4173793 R 99287 CDS NP_462853.1 16767238 1255494 4174864..4175625 1 NC_003197.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4175625 udp 1255494 udp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 uridine phosphorylase NP_462853.1 4174864 D 99287 CDS NP_462854.1 16767239 1255495 4175765..4177195 1 NC_003197.1 YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; DNA recombination protein RmuC 4177195 yigN 1255495 yigN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA recombination protein RmuC NP_462854.1 4175765 D 99287 CDS NP_462855.1 16767240 1255496 4177291..4178046 1 NC_003197.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; converts 2-octaprenyl-6-methoxy-1,4-benzoquinone to 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone; ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE 4178046 ubiE 1255496 ubiE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE NP_462855.1 4177291 D 99287 CDS NP_462856.1 16767241 1255497 4178056..4178661 1 NC_003197.1 inner membrane protein 4178661 yigP 1255497 yigP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462856.1 4178056 D 99287 CDS NP_462857.1 16767242 1255498 4178658..4180298 1 NC_003197.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; protein kinase UbiB 4180298 ubiB 1255498 ubiB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protein kinase UbiB NP_462857.1 4178658 D 99287 CDS NP_462858.1 16767243 1255499 4180504..4180758 1 NC_003197.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; Sec-independent protein translocase protein TatA 4180758 tatA 1255499 tatA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Sec-independent protein translocase protein TatA NP_462858.1 4180504 D 99287 CDS NP_462859.1 16767244 1255500 4180762..4181310 1 NC_003197.1 mediates the export of protein precursors bearing twin-arginine signal peptides; Sec-independent protein translocase protein TatB 4181310 tatB 1255500 tatB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Sec-independent protein translocase protein TatB NP_462859.1 4180762 D 99287 CDS NP_462860.1 16767245 1255501 4181313..4182092 1 NC_003197.1 with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; Sec-independent protein translocase protein TatC 4182092 tatC 1255501 tatC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Sec-independent protein translocase protein TatC NP_462860.1 4181313 D 99287 CDS NP_462861.3 308065944 1255502 4182134..4182916 1 NC_003197.1 magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4182916 yigW 1255502 yigW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNase TatD NP_462861.3 4182134 D 99287 CDS NP_462862.1 16767247 1255503 complement(4182924..4183412) 1 NC_003197.1 transcriptional activator RfaH 4183412 rfaH 1255503 rfaH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional activator RfaH NP_462862.1 4182924 R 99287 CDS NP_462863.1 16767248 1255504 4183598..4185076 1 NC_003197.1 catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4185076 yigC 1255504 yigC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NP_462863.1 4183598 D 99287 CDS NP_462864.1 16767249 1255505 4185162..4185863 1 NC_003197.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; NAD(P)H-flavin reductase 4185863 fre 1255505 fre Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NAD(P)H-flavin reductase NP_462864.1 4185162 D 99287 CDS NP_462865.1 16767250 1255506 4186117..4186830 1 NC_003197.1 outer membrane protein 4186830 1255506 STM3980 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_462865.1 4186117 D 99287 CDS NP_462866.1 16767251 1255507 4186882..4187940 1 NC_003197.1 cytoplasmic protein 4187940 1255507 STM3981 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462866.1 4186882 D 99287 CDS NP_462867.1 16767252 1255508 complement(4188137..4189300) 1 NC_003197.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 4189300 fadA 1255508 fadA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-ketoacyl-CoA thiolase NP_462867.1 4188137 R 99287 CDS NP_462868.1 16767253 1255509 complement(4189310..4191499) 1 NC_003197.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 4191499 fadB 1255509 fadB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multifunctional fatty acid oxidation complex subunit alpha NP_462868.1 4189310 R 99287 CDS NP_462869.1 16767254 1255510 4191689..4193020 1 NC_003197.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; Xaa-Pro dipeptidase 4193020 pepQ 1255510 pepQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Xaa-Pro dipeptidase NP_462869.1 4191689 D 99287 CDS NP_462870.1 16767255 1255511 4193020..4193634 1 NC_003197.1 cytoplasmic protein 4193634 yigZ 1255511 yigZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462870.1 4193020 D 99287 CDS NP_462871.1 16767256 1255512 4193673..4195124 1 NC_003197.1 Trk system potassium uptake protein TrkH 4195124 trkH 1255512 trkH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Trk system potassium uptake protein TrkH NP_462871.1 4193673 D 99287 CDS NP_462872.1 16767257 1255513 4195136..4195681 1 NC_003197.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen IX dehydrogenase 4195681 hemG 1255513 hemG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 protoporphyrinogen IX dehydrogenase NP_462872.1 4195136 D 99287 CDS NP_462873.1 16767258 1255519 complement(4201684..4202199) 1 NC_003197.1 in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein B 4202199 mobB 1255519 mobB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molybdopterin-guanine dinucleotide biosynthesis protein B NP_462873.1 4201684 R 99287 CDS NP_462874.1 16767259 1255520 complement(4202196..4202780) 1 NC_003197.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdenum cofactor guanylyltransferase 4202780 mobA 1255520 mobA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 molybdenum cofactor guanylyltransferase NP_462874.1 4202196 R 99287 CDS NP_462875.1 16767260 1255521 4202850..4203119 1 NC_003197.1 cytoplasmic protein 4203119 yihD 1255521 yihD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462875.1 4202850 D 99287 CDS NP_462876.1 16767261 1255522 4203196..4204182 1 NC_003197.1 serine/threonine protein kinase; MazF antagonist; catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; stress response kinase A 4204182 yihE 1255522 yihE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 stress response kinase A NP_462876.1 4203196 D 99287 CDS NP_462877.1 16767262 1255523 4204199..4204822 1 NC_003197.1 thiol-disulfide interchange protein DabA (SW:DSBA_SALTY); thiol:disulfide interchange protein DsbA 4204822 dsbA 1255523 dsbA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiol:disulfide interchange protein DsbA NP_462877.1 4204199 D 99287 CDS NP_462878.1 16767263 1255524 complement(4204835..4205743) 1 NC_003197.1 acyltransferase 4205743 yihG 1255524 yihG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acyltransferase NP_462878.1 4204835 R 99287 CDS NP_462879.1 16767264 1255525 4206131..4208917 1 NC_003197.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 4208917 polA 1255525 polA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase I NP_462879.1 4206131 D 99287 CDS NP_462881.1 16767266 1255527 complement(4209252..4209884) 1 NC_003197.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; GTP-binding protein EngB 4209884 engB 1255527 engB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GTP-binding protein EngB NP_462881.1 4209252 R 99287 CDS NP_462882.1 16767267 1255528 4210124..4210348 1 NC_003197.1 cytoplasmic protein 4210348 1255528 STM4002 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462882.1 4210124 D 99287 CDS NP_462883.1 16767268 1255529 4210467..4210982 1 NC_003197.1 Der GTPase-activating protein YihI 4210982 yihI 1255529 yihI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Der GTPase-activating protein YihI NP_462883.1 4210467 D 99287 CDS NP_462884.1 16767269 1255530 4211171..4212544 1 NC_003197.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4212544 hemN 1255530 hemN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 coproporphyrinogen III oxidase NP_462884.1 4211171 D 99287 CDS NP_462885.1 16767270 1255531 complement(4212857..4214266) 1 NC_003197.1 response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) 4214266 glnG 1255531 glnG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrogen regulation protein NR(I) NP_462885.1 4212857 R 99287 CDS NP_462886.1 16767271 1255532 complement(4214275..4215324) 1 NC_003197.1 sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) 4215324 glnL 1255532 glnL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nitrogen regulation protein NR(II) NP_462886.1 4214275 R 99287 CDS NP_462887.1 16767272 1255533 complement(4215599..4217008) 1 NC_003197.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 4217008 glnA 1255533 glnA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamine synthetase NP_462887.1 4215599 R 99287 CDS NP_462889.1 16767274 1255535 4217384..4219207 1 NC_003197.1 GTP-binding elongation factor family protein 4219207 typA 1255535 typA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GTP-binding elongation factor family protein NP_462889.1 4217384 D 99287 CDS NP_462890.1 16767275 1255536 complement(4219262..4219996) 1 NC_003197.1 similar to Escherichia coli phosphatase (AAC73853.1); hydrolase 4219996 1255536 STM4010 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrolase NP_462890.1 4219262 R 99287 CDS NP_462891.1 16767276 1255537 complement(4219981..4220859) 1 NC_003197.1 inner membrane protein 4220859 1255537 STM4011 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462891.1 4219981 R 99287 CDS NP_462892.1 16767277 1255538 complement(4220856..4222097) 1 NC_003197.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4222097 1255538 STM4012 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 coproporphyrinogen III oxidase NP_462892.1 4220856 R 99287 CDS NP_462893.2 39546382 1255539 complement(4222099..4222962) 1 NC_003197.1 membrane-associated metal-dependent hydrolase 4222962 1255539 STM4013.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane-associated metal-dependent hydrolase NP_462893.2 4222099 R 99287 CDS NP_462894.2 39546383 1255540 complement(4222967..4223575) 1 NC_003197.1 periplasmic protein 4223575 1255540 STM4014 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462894.2 4222967 R 99287 CDS NP_462895.1 16767280 1255541 complement(4224005..4224853) 1 NC_003197.1 cytoplasmic protein 4224853 1255541 STM4015 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462895.1 4224005 R 99287 CDS NP_462896.1 16767281 1255542 complement(4225010..4225702) 1 NC_003197.1 porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; porin OmpL 4225702 ompL 1255542 ompL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 porin OmpL NP_462896.1 4225010 R 99287 CDS NP_462897.1 16767282 1255543 complement(4225770..4227191) 1 NC_003197.1 symporter 4227191 yihO 1255543 yihO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 symporter NP_462897.1 4225770 R 99287 CDS NP_462898.1 16767283 1255544 complement(4227237..4228619) 1 NC_003197.1 inner membrane symporter 4228619 yihP 1255544 yihP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane symporter NP_462898.1 4227237 R 99287 CDS NP_462899.1 16767284 1255545 complement(4228665..4230701) 1 NC_003197.1 alpha-glucosidase 4230701 yihQ 1255545 yihQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alpha-glucosidase NP_462899.1 4228665 R 99287 CDS NP_462900.2 39546384 1255546 complement(4230745..4231596) 1 NC_003197.1 aldose-1-epimerase 4231596 yihR 1255546 yihR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aldose-1-epimerase NP_462900.2 4230745 R 99287 CDS NP_462901.1 16767286 1255547 complement(4231606..4232847) 1 NC_003197.1 isomerase 4232847 yihS 1255547 yihS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 isomerase NP_462901.1 4231606 R 99287 CDS NP_462902.1 16767287 1255548 complement(4232863..4233741) 1 NC_003197.1 aldolase 4233741 yihT 1255548 yihT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aldolase NP_462902.1 4232863 R 99287 CDS NP_462903.1 16767288 1255549 complement(4233764..4234660) 1 NC_003197.1 oxidoreductase 4234660 yihU 1255549 yihU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oxidoreductase NP_462903.1 4233764 R 99287 CDS NP_462904.2 39546385 1255550 4234819..4235721 1 NC_003197.1 sugar kinase 4235721 yihV 1255550 yihV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar kinase NP_462904.2 4234819 D 99287 CDS NP_462905.1 16767290 1255551 4235755..4236558 1 NC_003197.1 glycerol-3-phosphate regulon repressor 4236558 yihW 1255551 yihW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerol-3-phosphate regulon repressor NP_462905.1 4235755 D 99287 CDS NP_462906.1 16767291 1255552 4236749..4237348 1 NC_003197.1 alpha-D-glucose-1-phosphate phosphatase 4237348 yihX 1255552 yihX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alpha-D-glucose-1-phosphate phosphatase NP_462906.1 4236749 D 99287 CDS NP_462907.1 16767292 1255553 4237342..4238214 1 NC_003197.1 hypothetical protein 4238214 1255553 STM4027 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462907.1 4237342 D 99287 CDS NP_462908.1 16767293 1255554 4238211..4238648 1 NC_003197.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4238648 yihZ 1255554 yihZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-tyrosyl-tRNA(Tyr) deacylase NP_462908.1 4238211 D 99287 CDS NP_462909.1 16767294 1255555 4238645..4239634 1 NC_003197.1 acetyltransferase 4239634 yiiD 1255555 yiiD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyltransferase NP_462909.1 4238645 D 99287 CDS NP_462910.2 39546386 1255556 complement(4239649..4240077) 1 NC_003197.1 hypothetical protein 4240077 1255556 STM4030.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462910.2 4239649 R 99287 CDS NP_462911.1 16767296 1255557 complement(4240092..4240403) 1 NC_003197.1 cytoplasmic protein 4240403 1255557 STM4031 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462911.1 4240092 R 99287 CDS NP_462912.1 16767297 1255558 complement(4240489..4241418) 1 NC_003197.1 acetyl esterase 4241418 1255558 STM4032 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyl esterase NP_462912.1 4240489 R 99287 CDS NP_945170.1 39546387 2673731 4241636..4241947 1 NC_003197.1 hypothetical protein 4241947 2673731 STM4032.2N Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945170.1 4241636 D 99287 CDS NP_462913.2 39546388 1255559 4241948..4242238 1 NC_003197.1 merR family; MerR family regulatory protein 4242238 1255559 STM4033 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MerR family regulatory protein NP_462913.2 4241948 D 99287 CDS NP_462914.1 16767299 1255560 complement(4242285..4243214) 1 NC_003197.1 required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE 4243214 fdhE 1255560 fdhE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate dehydrogenase accessory protein FdhE NP_462914.1 4242285 R 99287 CDS NP_462915.1 16767300 1255561 complement(4243211..4243846) 1 NC_003197.1 cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O cytochrome B556 subunit 4243846 fdoI 1255561 fdoI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate dehydrogenase-O cytochrome B556 subunit NP_462915.1 4243211 R 99287 CDS NP_462916.1 16767301 1255562 complement(4243843..4244745) 1 NC_003197.1 formate dehydrogenase-O Fe-S subunit 4244745 fdoH 1255562 fdoH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate dehydrogenase-O Fe-S subunit NP_462916.1 4243843 R 99287 CDS NP_462917.1 16767302 1255563 complement(4244758..4247808) 1 NC_003197.1 formate dehydrogenase large subunit 4247808 fdoG 1255563 fdoG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate dehydrogenase large subunit NP_462917.1 4244758 R 99287 CDS NP_462918.1 16767303 1255564 4248003..4248839 1 NC_003197.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein FdhD 4248839 fdhD 1255564 fdhD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate dehydrogenase accessory protein FdhD NP_462918.1 4248003 D 99287 CDS NP_462919.1 16767304 1255565 complement(4249107..4250138) 1 NC_003197.1 inner membrane lipoprotein 4250138 1255565 STM4039 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane lipoprotein NP_462919.1 4249107 R 99287 CDS NP_462920.1 16767305 1255566 4250363..4251421 1 NC_003197.1 cytoplasmic protein 4251421 yiiG 1255566 yiiG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462920.1 4250363 D 99287 CDS NP_462921.1 16767306 1255567 complement(4251776..4252099) 1 NC_003197.1 inner membrane protein 4252099 1255567 STM4041 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462921.1 4251776 R 99287 CDS NP_462922.1 16767307 1255568 complement(4252099..4252758) 1 NC_003197.1 branched-chain amino acid permease 4252758 1255568 STM4042 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 branched-chain amino acid permease NP_462922.1 4252099 R 99287 CDS NP_462923.1 16767308 1255569 4252841..4253407 1 NC_003197.1 hypothetical protein 4253407 1255569 STM4042A Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462923.1 4252841 D 99287 CDS NP_462924.1 16767309 1255570 complement(4253496..4253810) 1 NC_003197.1 L-rhamnose mutarotase 4253810 yiiL 1255570 yiiL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-rhamnose mutarotase NP_462924.1 4253496 R 99287 CDS NP_462925.1 16767310 1255571 complement(4253807..4254955) 1 NC_003197.1 alcohol dehydrogenase 4254955 1255571 STM4044 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alcohol dehydrogenase NP_462925.1 4253807 R 99287 CDS NP_462926.1 16767311 1255572 complement(4255082..4255909) 1 NC_003197.1 rhamnulose-1-phosphate aldolase 4255909 rhaD 1255572 rhaD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rhamnulose-1-phosphate aldolase NP_462926.1 4255082 R 99287 CDS NP_462927.1 16767312 1255573 complement(4256052..4257311) 1 NC_003197.1 catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase 4257311 rhaA 1255573 rhaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-rhamnose isomerase NP_462927.1 4256052 R 99287 CDS NP_462928.1 16767313 1255574 complement(4257308..4258777) 1 NC_003197.1 catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase 4258777 rhaB 1255574 rhaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rhamnulokinase NP_462928.1 4257308 R 99287 CDS NP_462929.1 16767314 1255575 4259065..4259901 1 NC_003197.1 activates the expression of the rhaBAD operon and rhaT gene; HTH-type transcriptional activator RhaS 4259901 rhaS 1255575 rhaS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional activator RhaS NP_462929.1 4259065 D 99287 CDS NP_462930.1 16767315 1255576 4260054..4260902 1 NC_003197.1 activates the expression of rhaRS in response to L-rhamnose; HTH-type transcriptional activator RhaR 4260902 rhaR 1255576 rhaR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional activator RhaR NP_462930.1 4260054 D 99287 CDS NP_462931.1 16767316 1255577 complement(4260899..4261933) 1 NC_003197.1 transports L-rhamnose and L-lyxose into the cell; L-rhamnose-proton symporter 4261933 rhaT 1255577 rhaT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-rhamnose-proton symporter NP_462931.1 4260899 R 99287 CDS NP_462932.2 308065948 1255578 4262564..4263235 1 NC_003197.1 hypothetical 15.6 kDa protein in RhaT 5'region (SW:YIIY_SALTY); hypothetical protein 4263235 1255578 STM4051 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462932.2 4262564 D 99287 CDS NP_462933.1 16767318 1255579 complement(4263393..4264700) 1 NC_003197.1 C4-dicarboxylate transport system 4264700 1255579 STM4052 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 C4-dicarboxylate transport system NP_462933.1 4263393 R 99287 CDS NP_462934.1 16767319 1255580 complement(4264693..4265208) 1 NC_003197.1 C4-dicarboxylate transport system 4265208 1255580 STM4053 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 C4-dicarboxylate transport system NP_462934.1 4264693 R 99287 CDS NP_462935.1 16767320 1255581 complement(4265227..4266210) 1 NC_003197.1 hypothetical protein in sodA 5'region (SW:YIIZ_SALTY); hypothetical protein 4266210 1255581 STM4054 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462935.1 4265227 R 99287 CDS NP_462936.1 16767321 1255582 4266539..4267159 1 NC_003197.1 SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4267159 sodA 1255582 sodA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 superoxide dismutase NP_462936.1 4266539 D 99287 CDS NP_462937.2 39546389 1255583 4267229..4267918 1 NC_003197.1 hypothetical protein 4267918 1255583 STM4056.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462937.2 4267229 D 99287 CDS NP_462938.1 16767323 1255584 4267930..4268325 1 NC_003197.1 inner membrane protein 4268325 1255584 STM4057 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462938.1 4267930 D 99287 CDS NP_462939.1 16767324 1255585 complement(4268376..4269749) 1 NC_003197.1 part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; sensory kinase CpxS 4269749 cpxA 1255585 cpxA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensory kinase CpxS NP_462939.1 4268376 R 99287 CDS NP_462940.1 16767325 1255586 complement(4269746..4270444) 1 NC_003197.1 response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; response reguator CpxR 4270444 cpxR 1255586 cpxR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 response reguator CpxR NP_462940.1 4269746 R 99287 CDS NP_462941.1 16767326 1255587 4270595..4271095 1 NC_003197.1 repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; cpx regulon periplasmic repressor 4271095 cpxP 1255587 cpxP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cpx regulon periplasmic repressor NP_462941.1 4270595 D 99287 CDS NP_462942.1 16767327 1255588 4271243..4272145 1 NC_003197.1 member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; cation-efflux pump FieF 4272145 fieF 1255588 fieF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cation-efflux pump FieF NP_462942.1 4271243 D 99287 CDS NP_462943.1 16767328 1255589 4272330..4273292 1 NC_003197.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 4273292 pfkA 1255589 pfkA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 6-phosphofructokinase NP_462943.1 4272330 D 99287 CDS NP_462944.1 16767329 1255590 4273496..4274485 1 NC_003197.1 sulfate-binding protein (SW:SUBI_SALTY); ABC superfamily binding protein; sulfate-binding protein 4274485 sbp 1255590 sbp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfate-binding protein NP_462944.1 4273496 D 99287 CDS NP_462945.1 16767330 1255591 4274586..4275341 1 NC_003197.1 CDP-diacylglycerol pyrophosphatase (SW:CDH_SALTY); CDP-diacylglycerol pyrophosphatase 4275341 ushB 1255591 ushB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 CDP-diacylglycerol pyrophosphatase NP_462945.1 4274586 D 99287 CDS NP_462946.1 16767331 1255592 4275604..4276938 1 NC_003197.1 Na+/galactoside symporter 4276938 1255592 STM4065 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Na+/galactoside symporter NP_462946.1 4275604 D 99287 CDS NP_462947.1 16767332 1255593 4276949..4277908 1 NC_003197.1 phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; sugar kinase 4277908 1255593 STM4066 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar kinase NP_462947.1 4276949 D 99287 CDS NP_462948.1 16767333 1255594 4277918..4278958 1 NC_003197.1 ADP-ribosylglycohydrolase 4278958 1255594 STM4067 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ADP-ribosylglycohydrolase NP_462948.1 4277918 D 99287 CDS NP_462949.1 16767334 1255595 4279021..4279743 1 NC_003197.1 GntR family regulatory protein 4279743 1255595 STM4068 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GntR family regulatory protein NP_462949.1 4279021 D 99287 CDS NP_462950.1 16767335 1255596 4279841..4280005 1 NC_003197.1 periplasmic protein 4280005 1255596 STM4069 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462950.1 4279841 D 99287 CDS NP_462951.1 16767336 1255597 4280021..4280152 1 NC_003197.1 hypothetical protein 4280152 1255597 STM4070 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_462951.1 4280021 D 99287 CDS NP_462952.1 16767337 1255598 complement(4280242..4280508) 1 NC_003197.1 mannose-6-phosphate isomerase 4280508 1255598 STM4071 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mannose-6-phosphate isomerase NP_462952.1 4280242 R 99287 CDS NP_462953.1 16767338 1255599 complement(4280606..4282198) 1 NC_003197.1 autoinducer-2 kinase LsrK 4282198 ydeV 1255599 ydeV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 autoinducer-2 kinase LsrK NP_462953.1 4280606 R 99287 CDS NP_462954.1 16767339 1255600 complement(4282286..4283245) 1 NC_003197.1 transcriptional regulator LysR 4283245 1255600 STM4073 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator LysR NP_462954.1 4282286 R 99287 CDS NP_462955.1 16767340 1255601 4283501..4285036 1 NC_003197.1 autoinducer 2 import system ATP-binding protein LsrA 4285036 1255601 STM4074 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 autoinducer 2 import system ATP-binding protein LsrA NP_462955.1 4283501 D 99287 CDS NP_462956.1 16767341 1255602 4285030..4286073 1 NC_003197.1 autoinducer 2 import system permease LsrC 4286073 1255602 STM4075 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 autoinducer 2 import system permease LsrC NP_462956.1 4285030 D 99287 CDS NP_462957.1 16767342 1255603 4286070..4287071 1 NC_003197.1 autoinducer 2 import system permease LsrD 4287071 1255603 STM4076 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 autoinducer 2 import system permease LsrD NP_462957.1 4286070 D 99287 CDS NP_462958.1 16767343 1255604 4287100..4288122 1 NC_003197.1 autoinducer 2 import system substrate-binding protein LsrB 4288122 1255604 STM4077 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 autoinducer 2 import system substrate-binding protein LsrB NP_462958.1 4287100 D 99287 CDS NP_462959.1 16767344 1255605 4288151..4289026 1 NC_003197.1 autoinducer-2 aldolase LsrF 4289026 1255605 STM4078 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 autoinducer-2 aldolase LsrF NP_462959.1 4288151 D 99287 CDS NP_462960.2 39546390 1255606 4289106..4289399 1 NC_003197.1 autoinducer-2 degrading protein LsrG 4289399 1255606 STM4079.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 autoinducer-2 degrading protein LsrG NP_462960.2 4289106 D 99287 CDS NP_462961.1 16767346 1255607 4289409..4290173 1 NC_003197.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; epimerase 4290173 1255607 STM4080 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 epimerase NP_462961.1 4289409 D 99287 CDS NP_462962.1 16767347 1255608 complement(4290265..4291032) 1 NC_003197.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 4291032 tpiA 1255608 tpiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 triosephosphate isomerase NP_462962.1 4290265 R 99287 CDS NP_462963.1 16767348 1255609 complement(4291145..4291741) 1 NC_003197.1 periplasmic protein 4291741 yiiQ 1255609 yiiQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462963.1 4291145 R 99287 CDS NP_462964.1 16767349 1255610 4291842..4292270 1 NC_003197.1 inner membrane protein 4292270 yiiR 1255610 yiiR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_462964.1 4291842 D 99287 CDS NP_462965.1 16767350 1255611 complement(4292377..4293123) 1 NC_003197.1 ferredoxin-NADP reductase 4293123 fpr 1255611 fpr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferredoxin-NADP reductase NP_462965.1 4292377 R 99287 CDS NP_462966.1 16767351 1255612 complement(4293220..4294230) 1 NC_003197.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 4294230 glpX 1255612 glpX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fructose 1,6-bisphosphatase II NP_462966.1 4293220 R 99287 CDS NP_462967.1 16767352 1255613 complement(4294342..4295850) 1 NC_003197.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 4295850 glpK 1255613 glpK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerol kinase NP_462967.1 4294342 R 99287 CDS NP_462968.1 16767353 1255614 complement(4295871..4296716) 1 NC_003197.1 glycerol diffusion protein 4296716 glpF 1255614 glpF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerol diffusion protein NP_462968.1 4295871 R 99287 CDS NP_462969.1 16767354 1255615 4297115..4297354 1 NC_003197.1 cell division protein ZapB 4297354 yiiU 1255615 yiiU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell division protein ZapB NP_462969.1 4297115 D 99287 CDS NP_462970.1 16767355 1255616 complement(4297576..4298061) 1 NC_003197.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4298061 menG 1255616 menG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonuclease activity regulator protein RraA NP_462970.1 4297576 R 99287 CDS NP_462971.1 16767356 1255617 complement(4298154..4299083) 1 NC_003197.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4299083 menA 1255617 menA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1,4-dihydroxy-2-naphthoate octaprenyltransferase NP_462971.1 4298154 R 99287 CDS NP_462972.1 16767357 1255618 complement(4299150..4300481) 1 NC_003197.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATPase subunit HslU 4300481 hslU 1255618 hslU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent protease ATPase subunit HslU NP_462972.1 4299150 R 99287 CDS NP_462973.1 16767358 1255619 complement(4300491..4301021) 1 NC_003197.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit HslV 4301021 hslV 1255619 hslV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent protease peptidase subunit HslV NP_462973.1 4300491 R 99287 CDS NP_462974.1 16767359 1255620 complement(4301113..4302087) 1 NC_003197.1 essential cell division protein FtsN 4302087 ftsN 1255620 ftsN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 essential cell division protein FtsN NP_462974.1 4301113 R 99287 CDS NP_462975.1 16767360 1255621 complement(4302181..4303206) 1 NC_003197.1 negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; GalR/LacI family transcriptional repressor 4303206 cytR 1255621 cytR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GalR/LacI family transcriptional repressor NP_462975.1 4302181 R 99287 CDS NP_462976.1 16767361 1255622 complement(4303361..4305559) 1 NC_003197.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosomal protein N' 4305559 priA 1255622 priA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 primosomal protein N' NP_462976.1 4303361 R 99287 CDS NP_462977.1 16767362 1255623 4305763..4305975 1 NC_003197.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 4305975 rpmE 1255623 rpmE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L31 NP_462977.1 4305763 D 99287 CDS NP_462978.1 16767363 1255624 complement(4306021..4306683) 1 NC_003197.1 outer membrane lipoprotein 4306683 1255624 STM4097 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_462978.1 4306021 R 99287 CDS NP_462979.1 16767364 1255625 complement(4306884..4308674) 1 NC_003197.1 arylsulfate sulfotransferase 4308674 1255625 STM4098 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arylsulfate sulfotransferase NP_462979.1 4306884 R 99287 CDS NP_462980.1 16767365 1255626 complement(4309131..4309448) 1 NC_003197.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor MetJ 4309448 metJ 1255626 metJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional repressor MetJ NP_462980.1 4309131 R 99287 CDS NP_462981.1 16767366 1255627 4309713..4310873 1 NC_003197.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 4310873 metB 1255627 metB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cystathionine gamma-synthase NP_462981.1 4309713 D 99287 CDS NP_462982.1 16767367 1255628 4310876..4313308 1 NC_003197.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4313308 metL 1255628 metL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional aspartate kinase II/homoserine dehydrogenase II NP_462982.1 4310876 D 99287 CDS NP_462983.1 16767368 1255629 complement(4313424..4314281) 1 NC_003197.1 mechanosensitive channel protein 4314281 1255629 STM4102 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mechanosensitive channel protein NP_462983.1 4313424 R 99287 CDS YP_006892408.1 409994442 13865725 complement(4314284..4315282) 1 NC_003197.1 hypothetical protein 4315282 13865725 STM05910 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892408.1 4314284 R 99287 CDS NP_462984.1 16767369 1255630 complement(4315517..4316641) 1 NC_003197.1 cytoplasmic protein 4316641 1255630 STM4103 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_462984.1 4315517 R 99287 CDS NP_462985.1 16767370 1255631 4316777..4318333 1 NC_003197.1 5'-nucleotidase 4318333 1255631 STM4104 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 5'-nucleotidase NP_462985.1 4316777 D 99287 CDS NP_462986.1 16767371 1255632 4318528..4319418 1 NC_003197.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 4319418 metF 1255632 metF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 5,10-methylenetetrahydrofolate reductase NP_462986.1 4318528 D 99287 CDS NP_462987.1 16767372 1255633 4319583..4321763 1 NC_003197.1 peroxidase/catalase HPI (SW:CATA_SALTY); catalase-peroxidase 4321763 katG 1255633 katG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 catalase-peroxidase NP_462987.1 4319583 D 99287 CDS NP_462988.1 16767373 1255634 complement(4321821..4322444) 1 NC_003197.1 periplasmic protein 4322444 yijF 1255634 yijF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_462988.1 4321821 R 99287 CDS NP_462989.1 16767374 1255635 complement(4322703..4323806) 1 NC_003197.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 4323806 gldA 1255635 gldA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerol dehydrogenase NP_462989.1 4322703 R 99287 CDS NP_462990.1 16767375 1255636 complement(4323818..4324480) 1 NC_003197.1 fructose-6-phosphate aldolase 4324480 talC 1255636 talC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fructose-6-phosphate aldolase NP_462990.1 4323818 R 99287 CDS NP_462991.1 16767376 1255637 complement(4324491..4326992) 1 NC_003197.1 PEP-protein phosphotransferase 4326992 ptsA 1255637 ptsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PEP-protein phosphotransferase NP_462991.1 4324491 R 99287 CDS NP_462992.1 16767377 1255639 4327301..4328380 1 NC_003197.1 FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site; PTS system fructose-like transporter subunit IIC 4328380 frwC 1255639 frwC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system fructose-like transporter subunit IIC NP_462992.1 4327301 D 99287 CDS NP_462993.1 16767378 1255640 4328395..4328715 1 NC_003197.1 FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; PTS system fructose-like transporter subunit IIB 4328715 frwB 1255640 frwB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system fructose-like transporter subunit IIB NP_462993.1 4328395 D 99287 CDS NP_462994.1 16767379 1255641 4328814..4331111 1 NC_003197.1 involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein; pyruvate formate lyase II 4331111 pflD 1255641 pflD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate formate lyase II NP_462994.1 4328814 D 99287 CDS NP_462995.1 16767380 1255642 4331077..4331955 1 NC_003197.1 pyruvate formate lyase II activase 4331955 pflC 1255642 pflC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate formate lyase II activase NP_462995.1 4331077 D 99287 CDS NP_462996.1 16767381 1255643 4331957..4332310 1 NC_003197.1 FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog; PTS system fructose-like transporter subunit IIB 4332310 frwD 1255643 frwD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system fructose-like transporter subunit IIB NP_462996.1 4331957 D 99287 CDS NP_462997.1 16767382 1255644 complement(4332297..4333148) 1 NC_003197.1 AraC/XylS family transcriptional regulator 4333148 yijO 1255644 yijO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AraC/XylS family transcriptional regulator NP_462997.1 4332297 R 99287 CDS NP_462998.1 16767383 1255645 complement(4333309..4335042) 1 NC_003197.1 phosphoethanolamine transferase CptA 4335042 1255645 STM4118 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoethanolamine transferase CptA NP_462998.1 4333309 R 99287 CDS NP_462999.1 16767384 1255646 complement(4335253..4337904) 1 NC_003197.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4337904 ppc 1255646 ppc Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoenolpyruvate carboxylase NP_462999.1 4335253 R 99287 CDS NP_463000.1 16767385 1255647 complement(4338273..4339424) 1 NC_003197.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 4339424 argE 1255647 argE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetylornithine deacetylase NP_463000.1 4338273 R 99287 CDS NP_463001.1 16767386 1255648 4339513..4340517 1 NC_003197.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 4340517 argC 1255648 argC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-acetyl-gamma-glutamyl-phosphate reductase NP_463001.1 4339513 D 99287 CDS NP_463002.2 161353577 1255649 4340528..4341301 1 NC_003197.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4341301 argB 1255649 argB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetylglutamate kinase NP_463002.2 4340528 D 99287 CDS NP_463003.1 16767388 1255650 4341419..4342795 1 NC_003197.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4342795 argH 1255650 argH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 argininosuccinate lyase NP_463003.1 4341419 D 99287 CDS NP_463004.1 16767389 1255651 4343080..4343997 1 NC_003197.1 Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 4343997 oxyR 1255651 oxyR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional regulator OxyR NP_463004.1 4343080 D 99287 CDS NP_463005.1 16767390 1255652 complement(4343980..4345380) 1 NC_003197.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 4345380 udhA 1255652 udhA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 soluble pyridine nucleotide transhydrogenase NP_463005.1 4343980 R 99287 CDS NP_463006.2 409994443 1255653 4345582..4346214 1 NC_003197.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; HTH-type transcriptional repressor FabR 4346214 fabR 1255653 fabR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional repressor FabR NP_463006.2 4345582 D 99287 CDS NP_463007.1 16767392 1255654 4346230..4346589 1 NC_003197.1 inner membrane protein 4346589 yijD 1255654 yijD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463007.1 4346230 D 99287 CDS NP_463008.1 16767393 1255655 complement(4346636..4347736) 1 NC_003197.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA/tmRNA (uracil-C(5))-methyltransferase 4347736 trmA 1255655 trmA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA/tmRNA (uracil-C(5))-methyltransferase NP_463008.1 4346636 R 99287 CDS NP_463009.1 16767394 1255656 4348110..4349954 1 NC_003197.1 involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12 transporter BtuB 4349954 btuB 1255656 btuB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 vitamin B12 transporter BtuB NP_463009.1 4348110 D 99287 CDS NP_463010.1 16767395 1255657 4349899..4350750 1 NC_003197.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 4350750 murI 1255657 murI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamate racemase NP_463010.1 4349899 D 99287 CDS NP_463011.1 16767396 1255663 4356672..4357700 1 NC_003197.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4357700 murB 1255663 murB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-N-acetylenolpyruvoylglucosamine reductase NP_463011.1 4356672 D 99287 CDS NP_463012.1 16767397 1255664 4357697..4358659 1 NC_003197.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; bifunctional ligase/repressor BirA 4358659 birA 1255664 birA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional ligase/repressor BirA NP_463012.1 4357697 D 99287 CDS NP_463013.1 16767398 1255665 complement(4358694..4359644) 1 NC_003197.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 4359644 coaA 1255665 coaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pantothenate kinase NP_463013.1 4358694 R 99287 CDS NP_463014.1 16767399 1255667 complement(4359853..4360026) 1 NC_003197.1 cytoplasmic protein 4360026 1255667 STM4141 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463014.1 4359853 R 99287 CDS NP_463015.1 16767400 1255672 4360603..4361787 1 NC_003197.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4361787 tuf 1255672 tuf Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 elongation factor Tu NP_463015.1 4360603 D 99287 CDS NP_463016.1 16767401 1255673 4362017..4362400 1 NC_003197.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 4362400 secE 1255673 secE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 preprotein translocase subunit SecE NP_463016.1 4362017 D 99287 CDS NP_463017.1 16767402 1255674 4362402..4362947 1 NC_003197.1 Modulates Rho-dependent transcription termination; transcription termination/antitermination protein NusG 4362947 nusG 1255674 nusG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcription termination/antitermination protein NusG NP_463017.1 4362402 D 99287 CDS NP_463018.1 16767403 1255675 4363105..4363533 1 NC_003197.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4363533 rplK 1255675 rplK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L11 NP_463018.1 4363105 D 99287 CDS NP_463019.1 16767404 1255676 4363537..4364241 1 NC_003197.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 4364241 rplA 1255676 rplA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L1 NP_463019.1 4363537 D 99287 CDS NP_463020.1 16767405 1255677 4364661..4365158 1 NC_003197.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4365158 rplJ 1255677 rplJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L10 NP_463020.1 4364661 D 99287 CDS NP_463021.1 16767406 1255678 4365225..4365590 1 NC_003197.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 4365590 rplL 1255678 rplL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L7/L12 NP_463021.1 4365225 D 99287 CDS NP_463022.1 16767407 1255679 4365908..4369936 1 NC_003197.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4369936 rpoB 1255679 rpoB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-directed RNA polymerase subunit beta NP_463022.1 4365908 D 99287 CDS NP_463023.1 16767408 1255680 4370013..4374236 1 NC_003197.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4374236 rpoC 1255680 rpoC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-directed RNA polymerase subunit beta' NP_463023.1 4370013 D 99287 CDS NP_463024.1 16767409 1255681 4374278..4374601 1 NC_003197.1 inner membrane protein 4374601 1255681 STM4155 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463024.1 4374278 D 99287 CDS NP_463025.1 16767410 1255682 complement(4374607..4374951) 1 NC_003197.1 cytoplasmic protein 4374951 1255682 STM4156 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463025.1 4374607 R 99287 CDS NP_463026.1 16767411 1255683 4375350..4376360 1 NC_003197.1 cytoplasmic protein 4376360 1255683 STM4157 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463026.1 4375350 D 99287 CDS NP_463027.1 16767412 1255684 4376683..4376871 1 NC_003197.1 cytoplasmic protein 4376871 1255684 STM4158 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463027.1 4376683 D 99287 CDS NP_463028.1 16767413 1255685 complement(4377022..4378155) 1 NC_003197.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; catalyzes the formation of 2-iminoacetate and 4-cresol from tyrosine; forms a complex with ThiG; contains an iron-sulfur center; 2-iminoacetate synthase 4378155 thiH 1255685 thiH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2-iminoacetate synthase NP_463028.1 4377022 R 99287 CDS NP_463029.1 16767414 1255686 complement(4378152..4378922) 1 NC_003197.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4378922 thiG 1255686 thiG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiazole synthase NP_463029.1 4378152 R 99287 CDS NP_463030.1 16767415 1255687 complement(4378924..4379124) 1 NC_003197.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 4379124 1255687 STM4161 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sulfur carrier protein ThiS NP_463030.1 4378924 R 99287 CDS NP_463031.1 16767416 1255688 complement(4379105..4379863) 1 NC_003197.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 4379863 thiF 1255688 thiF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiamine biosynthesis protein ThiF NP_463031.1 4379105 R 99287 CDS NP_463032.1 16767417 1255689 complement(4379856..4380491) 1 NC_003197.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate synthase 4380491 thiE 1255689 thiE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiamine-phosphate synthase NP_463032.1 4379856 R 99287 CDS NP_463033.1 16767418 1255690 complement(4380491..4382386) 1 NC_003197.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; phosphomethylpyrimidine synthase 4382386 thiC 1255690 thiC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphomethylpyrimidine synthase NP_463033.1 4380491 R 99287 CDS NP_463034.1 16767419 1255691 complement(4382750..4383238) 1 NC_003197.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 4383238 rsd 1255691 rsd Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anti-RNA polymerase sigma 70 factor NP_463034.1 4382750 R 99287 CDS NP_463035.1 16767420 1255692 4383331..4384104 1 NC_003197.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4384104 nudC 1255692 nudC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NADH pyrophosphatase NP_463035.1 4383331 D 99287 CDS NP_463036.1 16767421 1255693 4384145..4385209 1 NC_003197.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4385209 hemE 1255693 hemE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 uroporphyrinogen decarboxylase NP_463036.1 4384145 D 99287 CDS NP_463037.1 16767422 1255694 4385219..4385890 1 NC_003197.1 Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; endonuclease V 4385890 nfi 1255694 nfi Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 endonuclease V NP_463037.1 4385219 D 99287 CDS NP_463038.1 16767423 1255695 4385932..4386522 1 NC_003197.1 hypothetical protein 4386522 1255695 STM4169 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463038.1 4385932 D 99287 CDS NP_463039.1 16767424 1255696 4386709..4386981 1 NC_003197.1 histone-like DNA-binding protein; DNA-binding protein HU-alpha 4386981 hupA 1255696 hupA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding protein HU-alpha NP_463039.1 4386709 D 99287 CDS NP_463040.1 16767425 1255697 4386993..4387685 1 NC_003197.1 inner membrane protein 4387685 yjaH 1255697 yjaH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463040.1 4386993 D 99287 CDS NP_463041.1 16767426 1255698 complement(4387727..4388182) 1 NC_003197.1 zinc resistance protein 4388182 zraP 1255698 zraP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 zinc resistance protein NP_463041.1 4387727 R 99287 CDS NP_463042.1 16767427 1255699 4388436..4389833 1 NC_003197.1 sensor protein HydA (SW:HYDH_SALTY); in two component regulatory system with HydG; sensor protein ZraS 4389833 hydH 1255699 hydH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensor protein ZraS NP_463042.1 4388436 D 99287 CDS NP_463043.1 16767428 1255700 4389839..4391164 1 NC_003197.1 DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulator ZraR 4391164 hydG 1255700 hydG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator ZraR NP_463043.1 4389839 D 99287 CDS NP_463044.1 16767429 1255701 complement(4391161..4392450) 1 NC_003197.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 4392450 purD 1255701 purD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoribosylamine--glycine ligase NP_463044.1 4391161 R 99287 CDS NP_463045.1 16767430 1255702 complement(4392462..4394051) 1 NC_003197.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4394051 purH 1255702 purH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase NP_463045.1 4392462 R 99287 CDS NP_463046.1 16767431 1255707 complement(4400247..4400684) 1 NC_003197.1 N-acetyltransferase 4400684 yjaB 1255707 yjaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-acetyltransferase NP_463046.1 4400247 R 99287 CDS NP_463047.1 16767432 1255708 4400841..4401770 1 NC_003197.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4401770 metA 1255708 metA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 homoserine O-succinyltransferase NP_463047.1 4400841 D 99287 CDS NP_463048.1 16767433 1255709 4402039..4403640 1 NC_003197.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4403640 aceB 1255709 aceB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 malate synthase NP_463048.1 4402039 D 99287 CDS NP_463049.1 16767434 1255710 4403672..4404976 1 NC_003197.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 4404976 aceA 1255710 aceA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 isocitrate lyase NP_463049.1 4403672 D 99287 CDS NP_463050.1 16767435 1255711 4405078..4406829 1 NC_003197.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase 4406829 aceK 1255711 aceK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional isocitrate dehydrogenase kinase/phosphatase NP_463050.1 4405078 D 99287 CDS NP_463051.1 16767436 1255712 complement(4406793..4407200) 1 NC_003197.1 cytoplasmic protein 4407200 1255712 STM4186 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463051.1 4406793 R 99287 CDS NP_463052.1 16767437 1255713 complement(4407211..4408035) 1 NC_003197.1 regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; acetate operon repressor 4408035 iclR 1255713 iclR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetate operon repressor NP_463052.1 4407211 R 99287 CDS NP_463053.2 39546391 1255714 4408339..4412022 1 NC_003197.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4412022 metH 1255714 metH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 B12-dependent methionine synthase NP_463053.2 4408339 D 99287 CDS NP_463054.1 16767439 1255715 4412289..4413920 1 NC_003197.1 Na/Pi co-transporter 4413920 yjbB 1255715 yjbB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Na/Pi co-transporter NP_463054.1 4412289 D 99287 CDS NP_463055.1 16767440 1255716 complement(4413996..4414685) 1 NC_003197.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 4414685 pepE 1255716 pepE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidase E NP_463055.1 4413996 R 99287 CDS NP_463056.1 16767441 1255717 4414757..4414858 1 NC_003197.1 cytoplasmic protein 4414858 1255717 STM4191 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463056.1 4414757 D 99287 CDS NP_463057.1 16767442 1255718 4414893..4415432 1 NC_003197.1 cytoplasmic protein 4415432 1255718 STM4192 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463057.1 4414893 D 99287 CDS NP_463058.1 16767443 1255719 4415479..4416348 1 NC_003197.1 catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; rRNA large subunit pseudouridine synthase F 4416348 rluF 1255719 rluF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA large subunit pseudouridine synthase F NP_463058.1 4415479 D 99287 CDS NP_463059.1 16767444 1255720 complement(4416345..4416617) 1 NC_003197.1 cytoplasmic protein 4416617 yjbD 1255720 yjbD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463059.1 4416345 R 99287 CDS NP_463060.1 16767445 1255721 complement(4416715..4417656) 1 NC_003197.1 Na+-dependent transporter 4417656 1255721 STM4195 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Na+-dependent transporter NP_463060.1 4416715 R 99287 CDS NP_463061.1 16767446 1255722 complement(4417918..4418646) 1 NC_003197.1 cytoplasmic protein 4418646 1255722 STM4196 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463061.1 4417918 R 99287 CDS NP_463062.1 16767447 1255723 complement(4418843..4419133) 1 NC_003197.1 inner membrane protein 4419133 1255723 STM4197 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463062.1 4418843 R 99287 CDS NP_463063.1 16767448 1255724 complement(4419382..4419837) 1 NC_003197.1 cytoplasmic protein 4419837 1255724 STM4198 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463063.1 4419382 R 99287 CDS NP_463064.1 16767449 1255725 complement(4419834..4420439) 1 NC_003197.1 cytoplasmic protein 4420439 1255725 STM4199 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463064.1 4419834 R 99287 CDS NP_463065.1 16767450 1255726 complement(4420444..4422189) 1 NC_003197.1 phage tail fiber protein H 4422189 1255726 STM4200 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail fiber protein H NP_463065.1 4420444 R 99287 CDS NP_463066.1 16767451 1255727 complement(4422192..4422824) 1 NC_003197.1 phage tail protein 4422824 1255727 STM4201 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail protein NP_463066.1 4422192 R 99287 CDS NP_463067.1 16767452 1255728 complement(4422817..4423932) 1 NC_003197.1 phage baseplate protein 4423932 1255728 STM4202 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage baseplate protein NP_463067.1 4422817 R 99287 CDS NP_463068.1 16767453 1255729 complement(4423923..4424282) 1 NC_003197.1 phage baseplate protein 4424282 1255729 STM4203 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage baseplate protein NP_463068.1 4423923 R 99287 CDS NP_463069.1 16767454 1255730 complement(4424446..4425993) 1 NC_003197.1 inner membrane protein 4425993 1255730 STM4204 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463069.1 4424446 R 99287 CDS NP_463070.1 16767455 1255731 complement(4425993..4426922) 1 NC_003197.1 phage glycosyltransferase 4426922 1255731 STM4205 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage glycosyltransferase NP_463070.1 4425993 R 99287 CDS NP_463071.1 16767456 1255732 complement(4426919..4427281) 1 NC_003197.1 phage glucose translocase 4427281 1255732 STM4206 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage glucose translocase NP_463071.1 4426919 R 99287 CDS NP_463072.1 16767457 1255733 complement(4427609..4428331) 1 NC_003197.1 phage baseplate component 4428331 1255733 STM4207 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage baseplate component NP_463072.1 4427609 R 99287 CDS NP_463073.1 16767458 1255734 complement(4428341..4429384) 1 NC_003197.1 cytoplasmic protein 4429384 1255734 STM4208 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463073.1 4428341 R 99287 CDS NP_463074.1 16767459 1255735 complement(4429372..4429581) 1 NC_003197.1 inner membrane protein 4429581 1255735 STM4209 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463074.1 4429372 R 99287 CDS NP_463075.1 16767460 1255736 complement(4429581..4430534) 1 NC_003197.1 methyl-accepting chemotaxis protein 4430534 1255736 STM4210 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methyl-accepting chemotaxis protein NP_463075.1 4429581 R 99287 CDS NP_463076.1 16767461 1255737 complement(4430534..4432888) 1 NC_003197.1 phage tail protein 4432888 1255737 STM4211 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail protein NP_463076.1 4430534 R 99287 CDS NP_463077.1 16767462 1255738 complement(4433440..4433964) 1 NC_003197.1 phage tail core protein 4433964 1255738 STM4212 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail core protein NP_463077.1 4433440 R 99287 CDS NP_463078.1 16767463 1255739 complement(4433964..4435391) 1 NC_003197.1 phage tail sheath protein 4435391 1255739 STM4213 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage tail sheath protein NP_463078.1 4433964 R 99287 CDS NP_463079.1 16767464 1255740 complement(4435381..4435578) 1 NC_003197.1 cytoplasmic protein 4435578 1255740 STM4214 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463079.1 4435381 R 99287 CDS NP_463080.1 16767465 1255741 complement(4435575..4436030) 1 NC_003197.1 cytoplasmic protein 4436030 1255741 STM4215 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463080.1 4435575 R 99287 CDS NP_463081.1 16767466 1255742 complement(4436190..4436504) 1 NC_003197.1 inner membrane protein 4436504 1255742 STM4216 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463081.1 4436190 R 99287 CDS NP_463082.1 16767467 1255743 complement(4436517..4437122) 1 NC_003197.1 soluble lytic murein transglycosylase 4437122 1255743 STM4217 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 soluble lytic murein transglycosylase NP_463082.1 4436517 R 99287 CDS NP_463083.1 16767468 1255744 complement(4437125..4437412) 1 NC_003197.1 inner membrane protein 4437412 1255744 STM4218 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463083.1 4437125 R 99287 CDS NP_463084.2 39546392 1255745 4437988..4438335 1 NC_003197.1 hypothetical protein 4438335 1255745 STM4219.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463084.2 4437988 D 99287 CDS NP_463085.1 16767470 1255746 complement(4438468..4439817) 1 NC_003197.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartokinase 4439817 lysC 1255746 lysC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aspartokinase NP_463085.1 4438468 R 99287 CDS NP_463086.1 16767471 1255747 4440162..4441811 1 NC_003197.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4441811 pgi 1255747 pgi Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucose-6-phosphate isomerase NP_463086.1 4440162 D 99287 CDS NP_463087.2 39546393 1255748 4442255..4442497 1 NC_003197.1 outer membrane protein 4442497 yjbE 1255748 yjbE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_463087.2 4442255 D 99287 CDS NP_463088.2 308065947 1255749 4442561..4443199 1 NC_003197.1 outer membrane lipoprotein 4443199 yjbF 1255749 yjbF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_463088.2 4442561 D 99287 CDS NP_463089.1 16767474 1255750 4443196..4443933 1 NC_003197.1 periplasmic protein 4443933 yjbG 1255750 yjbG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_463089.1 4443196 D 99287 CDS NP_463090.1 16767475 1255751 4443933..4446029 1 NC_003197.1 outer membrane lipoprotein 4446029 yjbH 1255751 yjbH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_463090.1 4443933 D 99287 CDS NP_463091.1 16767476 1255752 4446172..4446582 1 NC_003197.1 phosphate-starvation-inducible protein PsiE 4446582 yjbA 1255752 yjbA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphate-starvation-inducible protein PsiE NP_463091.1 4446172 D 99287 CDS NP_463092.1 16767477 1255753 complement(4446748..4447638) 1 NC_003197.1 with MalKFE is involved in the transport of maltose into the cell; maltose ABC transporter permease MalG 4447638 malG 1255753 malG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 maltose ABC transporter permease MalG NP_463092.1 4446748 R 99287 CDS NP_463093.1 16767478 1255754 complement(4447653..4449197) 1 NC_003197.1 with MalKGE is involved in maltose transport into the cell; maltose ABC transporter permease MalF 4449197 malF 1255754 malF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 maltose ABC transporter permease MalF NP_463093.1 4447653 R 99287 CDS NP_463094.2 161353576 1255755 complement(4449329..4450519) 1 NC_003197.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter substrate-binding protein MalE 4450519 malE 1255755 malE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 maltose ABC transporter substrate-binding protein MalE NP_463094.2 4449329 R 99287 CDS NP_463095.1 16767480 1255756 4450881..4451990 1 NC_003197.1 with malEFG is involved in import of maltose/maltodextrin; maltose ABC transporter ATP-binding protein MalK 4451990 malK 1255756 malK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 maltose ABC transporter ATP-binding protein MalK NP_463095.1 4450881 D 99287 CDS NP_463096.1 16767481 1255757 4452079..4453437 1 NC_003197.1 porin involved in the transport of maltose and maltodextrins; maltoporin 4453437 lamB 1255757 lamB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 maltoporin NP_463096.1 4452079 D 99287 CDS NP_463097.1 16767482 1255758 4453601..4454518 1 NC_003197.1 maltose operon periplasmic protein (SW:MALM_SALTY); protein of mal regulon; maltose regulon periplasmic protein 4454518 malM 1255758 malM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 maltose regulon periplasmic protein NP_463097.1 4453601 D 99287 CDS NP_463098.1 16767483 1255759 4454699..4455196 1 NC_003197.1 catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4455196 ubiC 1255759 ubiC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chorismate pyruvate lyase NP_463098.1 4454699 D 99287 CDS NP_463099.1 16767484 1255760 4455210..4456082 1 NC_003197.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 4456082 ubiA 1255760 ubiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4-hydroxybenzoate octaprenyltransferase NP_463099.1 4455210 D 99287 CDS NP_463100.1 16767485 1255761 complement(4456181..4458601) 1 NC_003197.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4458601 plsB 1255761 plsB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycerol-3-phosphate acyltransferase NP_463100.1 4456181 R 99287 CDS NP_463101.1 16767486 1255762 4458772..4459140 1 NC_003197.1 diacylglycerol kinase 4459140 dgkA 1255762 dgkA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diacylglycerol kinase NP_463101.1 4458772 D 99287 CDS NP_463102.1 16767487 1255763 4459249..4459857 1 NC_003197.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 4459857 lexA 1255763 lexA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LexA repressor NP_463102.1 4459249 D 99287 CDS NP_463103.1 16767488 1255764 4460035..4461360 1 NC_003197.1 DNA-damage-inducible protein F 4461360 dinF 1255764 dinF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-damage-inducible protein F NP_463103.1 4460035 D 99287 CDS NP_463104.1 16767489 1255765 4461357..4461470 1 NC_003197.1 cytoplasmic protein 4461470 1255765 STM4239 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463104.1 4461357 D 99287 CDS NP_463105.1 16767490 1255766 4461489..4461701 1 NC_003197.1 unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; stress-response protein 4461701 yjbJ 1255766 yjbJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 stress-response protein NP_463105.1 4461489 D 99287 CDS NP_463106.1 16767491 1255767 complement(4461800..4462315) 1 NC_003197.1 Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; zinc uptake transcriptional repressor 4462315 zur 1255767 zur Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 zinc uptake transcriptional repressor NP_463106.1 4461800 R 99287 CDS NP_463107.1 16767492 1255768 4462562..4463872 1 NC_003197.1 conjugative transfer protein 4463872 1255768 STM4242 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugative transfer protein NP_463107.1 4462562 D 99287 CDS NP_463108.1 16767493 1255769 4463960..4464958 1 NC_003197.1 TIM-barrel enzyme; possibly dehydrogenases; nifR3 family; tRNA-dihydrouridine synthase A 4464958 yjbN 1255769 yjbN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA-dihydrouridine synthase A NP_463108.1 4463960 D 99287 CDS NP_463109.1 16767494 1255770 4465126..4465368 1 NC_003197.1 coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; phage shock protein G 4465368 pspG 1255770 pspG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage shock protein G NP_463109.1 4465126 D 99287 CDS NP_463110.1 16767495 1255771 complement(4465543..4466526) 1 NC_003197.1 quinone oxidoreductase 4466526 qor 1255771 qor Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 quinone oxidoreductase NP_463110.1 4465543 R 99287 CDS NP_463111.1 16767496 1255772 4466591..4468006 1 NC_003197.1 unwinds double stranded DNA; replicative DNA helicase 4468006 dnaB 1255772 dnaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 replicative DNA helicase NP_463111.1 4466591 D 99287 CDS NP_463112.1 16767497 1255773 4468038..4469117 1 NC_003197.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4469117 alr 1255773 alr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alanine racemase NP_463112.1 4468038 D 99287 CDS NP_463113.1 16767498 1255774 4469303..4470496 1 NC_003197.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4470496 tyrB 1255774 tyrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aromatic amino acid aminotransferase NP_463113.1 4469303 D 99287 CDS NP_463114.1 16767499 1255775 4470683..4471396 1 NC_003197.1 Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; class B acid phosphatase 4471396 aphA 1255775 aphA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 class B acid phosphatase NP_463114.1 4470683 D 99287 CDS NP_463115.1 16767500 1255776 4471525..4471941 1 NC_003197.1 hypothetical protein 4471941 1255776 STM4250 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463115.1 4471525 D 99287 CDS NP_463116.1 16767501 1255777 4471944..4472300 1 NC_003197.1 cytoplasmic protein 4472300 yjbR 1255777 yjbR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463116.1 4471944 D 99287 CDS NP_463117.1 16767502 1255778 complement(4472301..4472639) 1 NC_003197.1 inner membrane protein 4472639 1255778 STM4252 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463117.1 4472301 R 99287 CDS NP_463118.1 16767503 1255779 complement(4472626..4473081) 1 NC_003197.1 outer membrane lipoprotein 4473081 1255779 STM4253 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_463118.1 4472626 R 99287 CDS NP_463119.1 16767504 1255780 complement(4473213..4476038) 1 NC_003197.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 4476038 uvrA 1255780 uvrA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 excinuclease ABC subunit A NP_463119.1 4473213 R 99287 CDS NP_463120.1 16767505 1255781 4476003..4476119 1 NC_003197.1 cytoplasmic protein 4476119 1255781 STM4255 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463120.1 4476003 D 99287 CDS NP_463121.1 16767506 1255782 4476286..4476816 1 NC_003197.1 binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 4476816 ssb 1255782 ssb Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 single-stranded DNA-binding protein NP_463121.1 4476286 D 99287 CDS NP_463122.1 16767507 1255783 4477857..4478489 1 NC_003197.1 inner membrane or exported protein spi4_A; hypothetical protein 4478489 1255783 STM4257 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463122.1 4477857 D 99287 CDS NP_463123.1 16767508 1255784 4478486..4479874 1 NC_003197.1 methyl-accepting chemotaxis protein 4479874 1255784 STM4258 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methyl-accepting chemotaxis protein NP_463123.1 4478486 D 99287 CDS NP_463124.1 16767509 1255785 4479864..4481183 1 NC_003197.1 ABC exporter outer membrane protein 4481183 1255785 STM4259 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC exporter outer membrane protein NP_463124.1 4479864 D 99287 CDS NP_463125.1 16767510 1255786 4481180..4482457 1 NC_003197.1 membrane permease; HlyD secretion protein; membrane permease 4482457 1255786 STM4260 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane permease NP_463125.1 4481180 D 99287 CDS NP_463126.1 16767511 1255787 4482474..4499153 1 NC_003197.1 fusion of two Salmonella typhimurium hypothetical proteins; may contain rearrangements with respect to similar proteins; inner membrane protein 4499153 1255787 STM4261 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463126.1 4482474 D 99287 CDS NP_463127.1 16767512 1255788 4499193..4501259 1 NC_003197.1 bacteriocin/lantibiotic ABC transporter 4501259 1255788 STM4262 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bacteriocin/lantibiotic ABC transporter NP_463127.1 4499193 D 99287 CDS NP_463128.1 16767513 1255789 complement(4501537..4501818) 1 NC_003197.1 inner membrane protein 4501818 yjcB 1255789 yjcB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463128.1 4501537 R 99287 CDS NP_463129.1 16767514 1255790 4502381..4503982 1 NC_003197.1 diguanylate cyclase/phosphodiesterase 4503982 yjcC 1255790 yjcC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diguanylate cyclase/phosphodiesterase NP_463129.1 4502381 D 99287 CDS NP_463130.1 16767515 1255791 complement(4503970..4504293) 1 NC_003197.1 regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS 4504293 soxS 1255791 soxS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional regulator SoxS NP_463130.1 4503970 R 99287 CDS NP_463131.1 16767516 1255792 4504380..4504838 1 NC_003197.1 redox-sensitive transcriptional activator SOXR (SW:SOXR_SALTY); MerR family; contains iron-sulfur center for redox-sensing; redox-sensitive transcriptional activator SoxR 4504838 soxR 1255792 soxR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 redox-sensitive transcriptional activator SoxR NP_463131.1 4504380 D 99287 CDS NP_463132.1 16767517 1255793 4505131..4505799 1 NC_003197.1 glutathione S-transferase 4505799 1255793 STM4267 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathione S-transferase NP_463132.1 4505131 D 99287 CDS NP_463133.1 16767518 1255794 4506146..4507495 1 NC_003197.1 xanthine/uracil permease family; hypothetical protein 4507495 1255794 STM4268 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463133.1 4506146 D 99287 CDS NP_463134.1 16767519 1255795 4507645..4509291 1 NC_003197.1 CPA1 family; Na/H transport protein 4509291 yjcE 1255795 yjcE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Na/H transport protein NP_463134.1 4507645 D 99287 CDS NP_463135.1 16767520 1255796 complement(4509386..4510273) 1 NC_003197.1 transcriptional regulator 4510273 1255796 STM4270 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_463135.1 4509386 R 99287 CDS NP_463136.1 16767521 1255797 4510377..4510787 1 NC_003197.1 inner membrane protein 4510787 1255797 STM4271 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463136.1 4510377 D 99287 CDS NP_463137.1 16767522 1255798 4510780..4511469 1 NC_003197.1 inner membrane protein 4511469 1255798 STM4272 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463137.1 4510780 D 99287 CDS NP_463138.1 16767523 1255799 complement(4511508..4513157) 1 NC_003197.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; cation/acetate symporter ActP 4513157 actP 1255799 actP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cation/acetate symporter ActP NP_463138.1 4511508 R 99287 CDS NP_463139.1 16767524 1255800 complement(4513154..4513468) 1 NC_003197.1 inner membrane protein 4513468 yjcH 1255800 yjcH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463139.1 4513154 R 99287 CDS NP_463140.1 16767525 1255801 complement(4513714..4515672) 1 NC_003197.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 4515672 acs 1255801 acs Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyl-CoA synthetase NP_463140.1 4513714 R 99287 CDS NP_463141.1 16767526 1255802 4515859..4516005 1 NC_003197.1 cytoplasmic protein 4516005 1255802 STM4276 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463141.1 4515859 D 99287 CDS NP_463142.1 16767527 1255803 4516104..4517540 1 NC_003197.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 4517540 nrfA 1255803 nrfA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome c552 NP_463142.1 4516104 D 99287 CDS NP_463143.2 39546394 1255804 4517652..4518218 1 NC_003197.1 part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit 4518218 nrfB 1255804 nrfB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome c nitrite reductase pentaheme subunit NP_463143.2 4517652 D 99287 CDS NP_463144.1 16767529 1255805 4518215..4518886 1 NC_003197.1 formate-dependent nitrite reductase 4518886 nrfC 1255805 nrfC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate-dependent nitrite reductase NP_463144.1 4518215 D 99287 CDS NP_463145.1 16767530 1255806 4518883..4519839 1 NC_003197.1 formate-dependent nitrate reductase 4519839 nrfD 1255806 nrfD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate-dependent nitrate reductase NP_463145.1 4518883 D 99287 CDS NP_463146.1 16767531 1255807 4519832..4522054 1 NC_003197.1 formate-dependent nitrite reductase 4522054 nrfE 1255807 nrfE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate-dependent nitrite reductase NP_463146.1 4519832 D 99287 CDS NP_463147.1 16767532 1255808 4522051..4522671 1 NC_003197.1 formate-dependent nitrite reductase complex subunit NrfG 4522671 nrfG 1255808 nrfG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate-dependent nitrite reductase complex subunit NrfG NP_463147.1 4522051 D 99287 CDS NP_463148.1 16767533 1255809 4523016..4524326 1 NC_003197.1 carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 4524326 gltP 1255809 gltP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutamate/aspartate:proton symporter NP_463148.1 4523016 D 99287 CDS NP_463149.1 16767534 1255810 complement(4524484..4525173) 1 NC_003197.1 contains TPR repeats; hypothetical protein 4525173 1255810 STM4284 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463149.1 4524484 R 99287 CDS NP_463150.1 16767535 1255811 complement(4525350..4527497) 1 NC_003197.1 formate dehydrogenase 4527497 fdhF 1255811 fdhF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 formate dehydrogenase NP_463150.1 4525350 R 99287 CDS NP_463151.1 16767536 1255812 complement(4527852..4528760) 1 NC_003197.1 dioxygenase for lipid synthesis; LpxO; dioxygenase 4528760 lpxO 1255812 lpxO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dioxygenase NP_463151.1 4527852 R 99287 CDS NP_463152.2 39546395 1255813 complement(4529018..4529452) 1 NC_003197.1 PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; aminoalkylphosphonic acid N-acetyltransferase 4529452 phnO 1255813 phnO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aminoalkylphosphonic acid N-acetyltransferase NP_463152.2 4529018 R 99287 CDS NP_463153.1 16767538 1255814 complement(4529604..4530047) 1 NC_003197.1 cytoplasmic protein 4530047 phnB 1255814 phnB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463153.1 4529604 R 99287 CDS NP_463154.1 16767539 1255815 complement(4530167..4530502) 1 NC_003197.1 involved in phosphonate metabolism; hypothetical protein 4530502 1255815 STM4289 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463154.1 4530167 R 99287 CDS NP_463155.1 16767540 1255816 4530970..4532472 1 NC_003197.1 proline/betaine transporter 4532472 proP 1255816 proP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 proline/betaine transporter NP_463155.1 4530970 D 99287 CDS NP_463156.1 16767541 1255817 complement(4532639..4533709) 1 NC_003197.1 sensor protein BasS/PmrB (SW:BASS_SALTY); in two-component regulatory system with BasR; sensor protein BasS 4533709 basS 1255817 basS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensor protein BasS NP_463156.1 4532639 R 99287 CDS NP_463157.1 16767542 1255818 complement(4533719..4534387) 1 NC_003197.1 response regulator in two-component regulatory system with BasS; transcriptional regulator BasR 4534387 basR 1255818 basR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator BasR NP_463157.1 4533719 R 99287 CDS NP_463158.1 16767543 1255819 complement(4534384..4536027) 1 NC_003197.1 involved in resistance to polymixin B by modifying lipid A; phosphoethanolamine transferase 4536027 eptA 1255819 eptA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoethanolamine transferase NP_463158.1 4534384 R 99287 CDS NP_463159.1 16767544 1255820 complement(4536161..4537498) 1 NC_003197.1 arginine/agmatin antiporter 4537498 yjdE 1255820 yjdE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arginine/agmatin antiporter NP_463159.1 4536161 R 99287 CDS NP_463160.1 16767545 1255821 complement(4537638..4538399) 1 NC_003197.1 transcriptional activator 4538399 adiY 1255821 adiY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional activator NP_463160.1 4537638 R 99287 CDS NP_463161.1 16767546 1255822 complement(4538697..4540967) 1 NC_003197.1 catabolic arginine decarboxylase 4540967 adi 1255822 adi Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 catabolic arginine decarboxylase NP_463161.1 4538697 R 99287 CDS NP_463162.1 16767547 1255823 complement(4541197..4542129) 1 NC_003197.1 DNA-binding transcriptional regulator MelR 4542129 melR 1255823 melR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional regulator MelR NP_463162.1 4541197 R 99287 CDS NP_463163.1 16767548 1255824 4542398..4543753 1 NC_003197.1 alpha-galactosidase (SW:AGAL_SALTY); alpha-galactosidase 4543753 melA 1255824 melA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alpha-galactosidase NP_463163.1 4542398 D 99287 CDS NP_463164.1 16767549 1255825 4543837..4545267 1 NC_003197.1 melibiose carrier protein; thiomethylgalactoside permease; melibiose permease; Na+/Li+ melibiose symporter; melibiosetransporter (SW:MELB_SALTY); GPH family; melibiose:sodium symporter 4545267 melB 1255825 melB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 melibiose:sodium symporter NP_463164.1 4543837 D 99287 CDS NP_463165.1 16767550 1255826 complement(4545365..4547011) 1 NC_003197.1 fumarase B 4547011 fumB 1255826 fumB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fumarase B NP_463165.1 4545365 R 99287 CDS NP_463166.1 16767551 1255827 complement(4547107..4548447) 1 NC_003197.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 4548447 dcuB 1255827 dcuB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic C4-dicarboxylate transporter NP_463166.1 4547107 R 99287 CDS NP_463167.1 16767552 1255828 complement(4548594..4548860) 1 NC_003197.1 cytoplasmic protein 4548860 1255828 STM4302 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463167.1 4548594 R 99287 CDS NP_463168.1 16767553 1255829 complement(4549177..4549896) 1 NC_003197.1 response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; transcriptional regulator 4549896 dcuR 1255829 dcuR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_463168.1 4549177 R 99287 CDS NP_463169.1 16767554 1255830 complement(4549893..4551524) 1 NC_003197.1 C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS 4551524 dcuS 1255830 dcuS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensory histidine kinase DcuS NP_463169.1 4549893 R 99287 CDS NP_463170.2 39546396 1255831 4551880..4554309 1 NC_003197.1 anaerobic dimethylsulfoxide reductase subunit A 4554309 1255831 STM4305.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic dimethylsulfoxide reductase subunit A NP_463170.2 4551880 D 99287 CDS NP_463171.1 16767556 1255832 4554323..4554949 1 NC_003197.1 anaerobic dimethylsulfoxide reductase subunit B 4554949 1255832 STM4306 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic dimethylsulfoxide reductase subunit B NP_463171.1 4554323 D 99287 CDS NP_463172.1 16767557 1255833 4554942..4555715 1 NC_003197.1 anaerobic dimethylsulfoxide reductase subunit C 4555715 1255833 STM4307 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic dimethylsulfoxide reductase subunit C NP_463172.1 4554942 D 99287 CDS NP_463173.1 16767558 1255834 4555731..4556384 1 NC_003197.1 anaerobic dehydrogenase subunit 4556384 1255834 STM4308 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic dehydrogenase subunit NP_463173.1 4555731 D 99287 CDS NP_463174.1 16767559 1255835 complement(4556468..4557868) 1 NC_003197.1 hypothetical protein 4557868 1255835 STM4309 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463174.1 4556468 R 99287 CDS NP_463175.1 16767560 1255836 4558172..4559077 1 NC_003197.1 inner membrane protein 4559077 1255836 STM4310 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463175.1 4558172 D 99287 CDS NP_463176.1 16767561 1255837 4559416..4559874 1 NC_003197.1 transposase for insertion sequence element is200 (SW:T200_SALTY); insertion sequence element IS200 transposase 4559874 tnpA_6 1255837 tnpA_6 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 insertion sequence element IS200 transposase NP_463176.1 4559416 D 99287 CDS NP_463177.1 16767562 1255838 complement(4560083..4560352) 1 NC_003197.1 hypothetical protein 4560352 1255838 STM4312 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463177.1 4560083 R 99287 CDS NP_463178.1 16767563 1255839 complement(4560360..4560575) 1 NC_003197.1 cytoplasmic protein 4560575 1255839 STM4313 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463178.1 4560360 R 99287 CDS NP_463179.2 308065946 1255840 complement(4560598..4560870) 1 NC_003197.1 LuxR family; LuxR family transcriptional regulator 4560870 1255840 STM4314 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LuxR family transcriptional regulator NP_463179.2 4560598 R 99287 CDS NP_463180.1 16767565 1255841 complement(4560882..4561757) 1 NC_003197.1 HilD; AraC-type; contains DNA-binding domain; AraC-type DNA-binding domain-containing protein 4561757 1255841 STM4315 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AraC-type DNA-binding domain-containing protein NP_463180.1 4560882 R 99287 CDS NP_463181.1 16767566 1255842 complement(4562022..4562243) 1 NC_003197.1 cytoplasmic protein 4562243 1255842 STM4316 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463181.1 4562022 R 99287 CDS NP_463182.1 16767567 1255843 4562560..4562853 1 NC_003197.1 CopG family; helix-turn-helix protein; hypothetical protein 4562853 1255843 STM4317 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463182.1 4562560 D 99287 CDS NP_463183.1 16767568 1255844 4562850..4563341 1 NC_003197.1 acetyltransferase 4563341 1255844 STM4318 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyltransferase NP_463183.1 4562850 D 99287 CDS NP_463184.1 16767569 1255845 complement(4563589..4564341) 1 NC_003197.1 nonspecific acid phosphatase (SW:PHON_SALTY); non-specific acid phosphatase 4564341 phoN 1255845 phoN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 non-specific acid phosphatase NP_463184.1 4563589 R 99287 CDS YP_006892409.1 409994444 13865712 complement(4565550..4565927) 1 NC_003197.1 hypothetical protein 4565927 13865712 STM06000 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein YP_006892409.1 4565550 R 99287 CDS NP_463185.1 16767570 1255846 4565999..4566331 1 NC_003197.1 MerR family regulatory protein 4566331 1255846 STM4320 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MerR family regulatory protein NP_463185.1 4565999 D 99287 CDS NP_463186.1 16767571 1255848 complement(4566770..4567345) 1 NC_003197.1 MerR family regulatory protein 4567345 yjdC 1255848 yjdC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 MerR family regulatory protein NP_463186.1 4566770 R 99287 CDS NP_463187.1 16767572 1255849 complement(4567382..4569085) 1 NC_003197.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein DsbD 4569085 dipZ 1255849 dipZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thiol:disulfide interchange protein DsbD NP_463187.1 4567382 R 99287 CDS NP_463188.1 16767573 1255850 complement(4569061..4569408) 1 NC_003197.1 copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA 4569408 cutA 1255850 cutA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 divalent-cation tolerance protein CutA NP_463188.1 4569061 R 99287 CDS NP_463189.1 16767574 1255851 complement(4569529..4570830) 1 NC_003197.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 4570830 dcuA 1255851 dcuA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic C4-dicarboxylate transporter NP_463189.1 4569529 R 99287 CDS NP_463190.1 16767575 1255852 complement(4570945..4572381) 1 NC_003197.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 4572381 aspA 1255852 aspA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aspartate ammonia-lyase NP_463190.1 4570945 R 99287 CDS NP_463191.2 161353575 1255853 4572722..4573198 1 NC_003197.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 4573198 fxsA 1255853 fxsA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 FxsA protein NP_463191.2 4572722 D 99287 CDS NP_463192.1 16767577 1255854 complement(4573257..4574498) 1 NC_003197.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; transporter 4574498 yjeH 1255854 yjeH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transporter NP_463192.1 4573257 R 99287 CDS NP_463193.1 16767578 1255855 4574774..4575067 1 NC_003197.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4575067 groES 1255855 groES Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 co-chaperonin GroES NP_463193.1 4574774 D 99287 CDS NP_463194.1 16767579 1255856 4575111..4576757 1 NC_003197.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 4576757 groEL 1255856 groEL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperonin GroEL NP_463194.1 4575111 D 99287 CDS NP_463195.1 16767580 1255857 4576983..4577354 1 NC_003197.1 outer membrane lipoprotein 4577354 yjeI 1255857 yjeI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein NP_463195.1 4576983 D 99287 CDS NP_463196.1 16767581 1255858 complement(4577402..4578259) 1 NC_003197.1 inner membrane protein 4578259 yjeJ 1255858 yjeJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463196.1 4577402 R 99287 CDS NP_463197.1 16767582 1255859 complement(4578541..4579569) 1 NC_003197.1 L-lysine 2,3-aminomutase 4579569 yjeK 1255859 yjeK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-lysine 2,3-aminomutase NP_463197.1 4578541 R 99287 CDS NP_463198.1 16767583 1255860 4579610..4580176 1 NC_003197.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4580176 efp 1255860 efp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 elongation factor P NP_463198.1 4579610 D 99287 CDS NP_463199.1 16767584 1255861 4580195..4580371 1 NC_003197.1 entericidin A 4580371 ecnA 1255861 ecnA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 entericidin A NP_463199.1 4580195 D 99287 CDS NP_463200.1 16767585 1255862 4580479..4580625 1 NC_003197.1 entericidin B 4580625 ecnB 1255862 ecnB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 entericidin B NP_463200.1 4580479 D 99287 CDS NP_463201.1 16767586 1255863 complement(4580656..4581243) 1 NC_003197.1 LuxR family; LuxR family transcriptional regulator 4581243 ecnR 1255863 ecnR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LuxR family transcriptional regulator NP_463201.1 4580656 R 99287 CDS NP_463202.1 16767587 1255864 4581500..4581817 1 NC_003197.1 member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations; quaternary ammonium compound-resistance protein SugE 4581817 sugE 1255864 sugE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 quaternary ammonium compound-resistance protein SugE NP_463202.1 4581500 D 99287 CDS NP_463203.1 16767588 1255865 complement(4581834..4582367) 1 NC_003197.1 lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 4582367 blc 1255865 blc Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane lipoprotein Blc NP_463203.1 4581834 R 99287 CDS NP_463204.1 16767589 1255866 complement(4582479..4582838) 1 NC_003197.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 4582838 frdD 1255866 frdD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fumarate reductase subunit D NP_463204.1 4582479 R 99287 CDS NP_463205.1 16767590 1255867 complement(4582849..4583244) 1 NC_003197.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 4583244 frdC 1255867 frdC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fumarate reductase subunit C NP_463205.1 4582849 R 99287 CDS NP_463206.1 16767591 1255868 complement(4583255..4583989) 1 NC_003197.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 4583989 frdB 1255868 frdB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fumarate reductase iron-sulfur subunit NP_463206.1 4583255 R 99287 CDS NP_463207.1 16767592 1255869 complement(4583982..4585772) 1 NC_003197.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 4585772 frdA 1255869 frdA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fumarate reductase flavoprotein subunit NP_463207.1 4583982 R 99287 CDS NP_463208.1 16767593 1255870 4586095..4587072 1 NC_003197.1 catalyzes the activation of beta-lysine which is then transfered to L34 of EF-P; elongation factor P--(R)-beta-lysine ligase 4587072 yjeA 1255870 yjeA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 elongation factor P--(R)-beta-lysine ligase NP_463208.1 4586095 D 99287 CDS NP_463209.1 16767594 1255871 4587298..4588800 1 NC_003197.1 hypothetical protein in poxA-psd intergenic region (SW:YJEM_SALTY); APC family; inner membrane transporter 4588800 yjeM 1255871 yjeM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane transporter NP_463209.1 4587298 D 99287 CDS NP_463210.1 16767595 1255872 4588852..4589166 1 NC_003197.1 inner membrane protein 4589166 yjeO 1255872 yjeO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463210.1 4588852 D 99287 CDS NP_463211.1 16767596 1255873 complement(4589233..4592559) 1 NC_003197.1 mechanosensitive channel protein 4592559 yjeP 1255873 yjeP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 mechanosensitive channel protein NP_463211.1 4589233 R 99287 CDS NP_463212.1 16767597 1255874 complement(4592578..4593546) 1 NC_003197.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4593546 psd 1255874 psd Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphatidylserine decarboxylase NP_463212.1 4592578 R 99287 CDS NP_463213.2 161353574 1255875 complement(4593638..4594690) 1 NC_003197.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome biogenesis GTPase RsgA 4594690 rsgA 1255875 rsgA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribosome biogenesis GTPase RsgA NP_463213.2 4593638 R 99287 CDS NP_463214.1 16767599 1255876 4594797..4595342 1 NC_003197.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4595342 orn 1255876 orn Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 oligoribonuclease NP_463214.1 4594797 D 99287 CDS NP_463215.3 409994445 1255877 complement(4595404..4596144) 1 NC_003197.1 arginine ABC transporter substrate-binding protein 4596144 1255877 STM4351 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arginine ABC transporter substrate-binding protein NP_463215.3 4595404 R 99287 CDS NP_463216.2 39546397 1255881 complement(4597229..4598368) 1 NC_003197.1 epoxyqueuosine reductase 4598368 yjeS 1255881 yjeS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 epoxyqueuosine reductase NP_463216.2 4597229 R 99287 CDS NP_463217.1 16767602 1255882 4598367..4599914 1 NC_003197.1 bifunctional ADP-dependent (S)-NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase 4599914 yjeF 1255882 yjeF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional ADP-dependent (S)-NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase NP_463217.1 4598367 D 99287 CDS NP_463218.1 16767603 1255883 4599886..4600347 1 NC_003197.1 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein 4600347 yjeE 1255883 yjeE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein NP_463218.1 4599886 D 99287 CDS NP_463219.1 16767604 1255884 4600364..4601683 1 NC_003197.1 N-acetylmuramoyl-L-alanine amidase AMIB (SW:AMIB_SALTY); a murein hydrolase; N-acetylmuramoyl-l-alanine amidase AmiB 4601683 amiB 1255884 amiB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 N-acetylmuramoyl-l-alanine amidase AmiB NP_463219.1 4600364 D 99287 CDS NP_463220.1 16767605 1255885 4601693..4603549 1 NC_003197.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein MutL 4603549 mutL 1255885 mutL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA mismatch repair protein MutL NP_463220.1 4601693 D 99287 CDS NP_463221.1 16767606 1255886 4603542..4604492 1 NC_003197.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA dimethylallyltransferase 4604492 miaA 1255886 miaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA dimethylallyltransferase NP_463221.1 4603542 D 99287 CDS NP_463222.1 16767607 1255887 4604575..4604883 1 NC_003197.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4604883 hfq 1255887 hfq Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RNA-binding protein Hfq NP_463222.1 4604575 D 99287 CDS NP_463223.1 16767608 1255888 4604955..4606235 1 NC_003197.1 involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX 4606235 hflX 1255888 hflX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GTPase HflX NP_463223.1 4604955 D 99287 CDS NP_463224.1 16767609 1255889 4606451..4607710 1 NC_003197.1 with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4607710 hflK 1255889 hflK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 FtsH protease regulator HflK NP_463224.1 4606451 D 99287 CDS NP_463225.1 16767610 1255890 4607713..4608717 1 NC_003197.1 with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4608717 hflC 1255890 hflC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 FtsH protease regulator HflC NP_463225.1 4607713 D 99287 CDS NP_463226.1 16767611 1255891 4608796..4608993 1 NC_003197.1 inner membrane protein 4608993 yjeT 1255891 yjeT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463226.1 4608796 D 99287 CDS NP_463227.1 16767612 1255892 4609096..4610394 1 NC_003197.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 4610394 purA 1255892 purA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 adenylosuccinate synthetase NP_463227.1 4609096 D 99287 CDS NP_463228.1 16767613 1255893 4610601..4611026 1 NC_003197.1 negatively regulates the transcription of genes upregulated by nitrosative stress; HTH-type transcriptional repressor NsrR 4611026 yjeB 1255893 yjeB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional repressor NsrR NP_463228.1 4610601 D 99287 CDS NP_463229.1 16767614 1255894 4611064..4613502 1 NC_003197.1 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; ribonuclease R 4613502 vacB 1255894 vacB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonuclease R NP_463229.1 4611064 D 99287 CDS NP_463230.1 16767615 1255895 4613593..4614324 1 NC_003197.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4614324 yjfH 1255895 yjfH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 23S rRNA (guanosine-2'-O-)-methyltransferase NP_463230.1 4613593 D 99287 CDS NP_463231.1 16767616 1255896 4614456..4614860 1 NC_003197.1 cytoplasmic protein 4614860 yjfI 1255896 yjfI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463231.1 4614456 D 99287 CDS NP_463232.1 16767617 1255897 4614875..4615573 1 NC_003197.1 phage shock protein A 4615573 yjfJ 1255897 yjfJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phage shock protein A NP_463232.1 4614875 D 99287 CDS NP_463233.1 16767618 1255898 4615573..4616643 1 NC_003197.1 potassium channel protein 4616643 1255898 STM4372 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 potassium channel protein NP_463233.1 4615573 D 99287 CDS NP_463234.2 409994446 1255899 4616640..4617299 1 NC_003197.1 cytoplasmic protein 4617299 yjfK 1255899 yjfK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463234.2 4616640 D 99287 CDS NP_463235.1 16767620 1255900 4617317..4617715 1 NC_003197.1 inner membrane protein 4617715 yjfL 1255900 yjfL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463235.1 4617317 D 99287 CDS NP_463236.1 16767621 1255901 4617725..4618363 1 NC_003197.1 inner membrane protein 4618363 yjfM 1255901 yjfM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463236.1 4617725 D 99287 CDS NP_463237.1 16767622 1255902 4618366..4619529 1 NC_003197.1 glutathionylspermidine synthase 4619529 yjfC 1255902 yjfC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glutathionylspermidine synthase NP_463237.1 4618366 D 99287 CDS NP_463238.3 409994447 1255903 4619614..4621236 1 NC_003197.1 DNA alkylation damage repair protein 4621236 aidB 1255903 aidB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA alkylation damage repair protein NP_463238.3 4619614 D 99287 CDS NP_463239.1 16767624 1255904 complement(4621281..4621601) 1 NC_003197.1 inner membrane protein 4621601 yjfN 1255904 yjfN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463239.1 4621281 R 99287 CDS NP_463240.1 16767625 1255905 complement(4621687..4622016) 1 NC_003197.1 in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility; biofilm peroxide resistance protein 4622016 yjfO 1255905 yjfO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 biofilm peroxide resistance protein NP_463240.1 4621687 R 99287 CDS NP_463241.1 16767626 1255906 4622200..4622949 1 NC_003197.1 YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; acyl-CoA esterase 4622949 yjfP 1255906 yjfP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acyl-CoA esterase NP_463241.1 4622200 D 99287 CDS NP_463242.1 16767627 1255907 complement(4622946..4623701) 1 NC_003197.1 negative regulator of ulaG and ulaABCDEF; HTH-type transcriptional repressor UlaR 4623701 yjfQ 1255907 yjfQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional repressor UlaR NP_463242.1 4622946 R 99287 CDS NP_463243.1 16767628 1255908 complement(4623806..4624870) 1 NC_003197.1 contains beta-lactamase fold; L-ascorbate 6-phosphate lactonase 4624870 yjfR 1255908 yjfR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-ascorbate 6-phosphate lactonase NP_463243.1 4623806 R 99287 CDS NP_463244.2 39546398 1255909 4625233..4626630 1 NC_003197.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4626630 ulaA 1255909 ulaA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system ascorbate-specific transporter subunit IIC NP_463244.2 4625233 D 99287 CDS NP_463245.1 16767630 1255910 4626646..4626951 1 NC_003197.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIB 4626951 sgaB 1255910 sgaB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system L-ascorbate-specific transporter subunit IIB NP_463245.1 4626646 D 99287 CDS NP_463246.1 16767631 1255911 4626961..4627425 1 NC_003197.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIA 4627425 ptxA 1255911 ptxA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system L-ascorbate-specific transporter subunit IIA NP_463246.1 4626961 D 99287 CDS NP_463247.1 16767632 1255912 4627439..4628089 1 NC_003197.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4628089 ulaD 1255912 ulaD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-keto-L-gulonate-6-phosphate decarboxylase NP_463247.1 4627439 D 99287 CDS NP_463248.1 16767633 1255913 4628099..4628953 1 NC_003197.1 UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-ribulose-5-phosphate 3-epimerase UlaE 4628953 sgaU 1255913 sgaU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-ribulose-5-phosphate 3-epimerase UlaE NP_463248.1 4628099 D 99287 CDS NP_463249.1 16767634 1255914 4628953..4629639 1 NC_003197.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase UlaF 4629639 sgaE 1255914 sgaE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-ribulose-5-phosphate 4-epimerase UlaF NP_463249.1 4628953 D 99287 CDS NP_463250.1 16767635 1255915 complement(4629768..4630043) 1 NC_003197.1 outer membrane protein 4630043 yjfY 1255915 yjfY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_463250.1 4629768 R 99287 CDS NP_463251.1 16767636 1255916 4630237..4630443 1 NC_003197.1 cytoplasmic protein 4630443 1255916 STM4390 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463251.1 4630237 D 99287 CDS NP_463252.1 16767637 1255917 4630514..4630909 1 NC_003197.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 4630909 rpsF 1255917 rpsF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S6 NP_463252.1 4630514 D 99287 CDS NP_463253.1 16767638 1255918 4630916..4631230 1 NC_003197.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4631230 priB 1255918 priB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 primosomal replication protein N NP_463253.1 4630916 D 99287 CDS NP_463254.1 16767639 1255919 4631235..4631462 1 NC_003197.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4631462 rpsR 1255919 rpsR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 30S ribosomal protein S18 NP_463254.1 4631235 D 99287 CDS NP_463255.1 16767640 1255920 4631504..4631953 1 NC_003197.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4631953 rplI 1255920 rplI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 50S ribosomal protein L9 NP_463255.1 4631504 D 99287 CDS NP_463256.1 16767641 1255921 4632101..4633027 1 NC_003197.1 permease 4633027 yifZ 1255921 yifZ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_463256.1 4632101 D 99287 CDS NP_463257.1 16767642 1255922 complement(4633077..4633712) 1 NC_003197.1 cell envelope opacity-associated protein A 4633712 ytfB 1255922 ytfB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cell envelope opacity-associated protein A NP_463257.1 4633077 R 99287 CDS NP_463258.2 161353572 1255923 4633932..4634552 1 NC_003197.1 FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4634552 fklB 1255923 fklB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptidyl-prolyl cis-trans isomerase NP_463258.2 4633932 D 99287 CDS NP_463259.1 16767644 1255924 4634848..4636257 1 NC_003197.1 involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 4636257 cycA 1255924 cycA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-alanine/D-serine/glycine permease NP_463259.1 4634848 D 99287 CDS NP_463260.1 16767645 1255925 complement(4636369..4637031) 1 NC_003197.1 Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair protein 4637031 ytfE 1255925 ytfE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 iron-sulfur cluster repair protein NP_463260.1 4636369 R 99287 CDS NP_463261.1 16767646 1255926 complement(4637134..4638099) 1 NC_003197.1 cationic amino acid transporter 4638099 ytfF 1255926 ytfF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cationic amino acid transporter NP_463261.1 4637134 R 99287 CDS NP_463262.1 16767647 1255927 complement(4638180..4639028) 1 NC_003197.1 reductase 4639028 ytfG 1255927 ytfG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 reductase NP_463262.1 4638180 R 99287 CDS NP_463263.1 16767648 1255928 4639116..4639502 1 NC_003197.1 transcriptional regulator 4639502 ytfH 1255928 ytfH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_463263.1 4639116 D 99287 CDS NP_463264.1 16767649 1255929 complement(4639560..4641503) 1 NC_003197.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein 4641503 cpdB 1255929 cpdB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein NP_463264.1 4639560 R 99287 CDS NP_463265.1 16767650 1255930 4641771..4642511 1 NC_003197.1 catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; 3'(2'),5'-bisphosphate nucleotidase CysQ 4642511 cysQ 1255930 cysQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3'(2'),5'-bisphosphate nucleotidase CysQ NP_463265.1 4641771 D 99287 CDS NP_463266.1 16767651 1255931 complement(4642501..4643058) 1 NC_003197.1 transcriptional regulator 4643058 ytfJ 1255931 ytfJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_463266.1 4642501 R 99287 CDS NP_463267.2 39546399 1255932 4643385..4643591 1 NC_003197.1 hypothetical protein 4643591 1255932 STM4406.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463267.2 4643385 D 99287 CDS NP_463268.1 16767653 1255933 complement(4643676..4645019) 1 NC_003197.1 hemolysin-like protein 4645019 ytfL 1255933 ytfL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hemolysin-like protein NP_463268.1 4643676 R 99287 CDS NP_463269.1 16767654 1255934 complement(4645202..4645840) 1 NC_003197.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; peptide methionine sulfoxide reductase A 4645840 msrA 1255934 msrA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptide methionine sulfoxide reductase A NP_463269.1 4645202 R 99287 CDS NP_463270.1 16767655 1255935 4646053..4647786 1 NC_003197.1 outer membrane protein 4647786 ytfM 1255935 ytfM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_463270.1 4646053 D 99287 CDS NP_463271.1 16767656 1255936 4647783..4651562 1 NC_003197.1 periplasmic protein 4651562 ytfN 1255936 ytfN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_463271.1 4647783 D 99287 CDS NP_463272.1 16767657 1255937 4651565..4651909 1 NC_003197.1 cytoplasmic protein 4651909 ytfP 1255937 ytfP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463272.1 4651565 D 99287 CDS NP_463273.1 16767658 1255938 complement(4651963..4653171) 1 NC_003197.1 pemease 4653171 1255938 STM4412 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pemease NP_463273.1 4651963 R 99287 CDS NP_463274.1 16767659 1255939 complement(4653168..4654331) 1 NC_003197.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; amidohydrolase 4654331 1255939 STM4413 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 amidohydrolase NP_463274.1 4653168 R 99287 CDS NP_463275.1 16767660 1255940 complement(4654741..4655271) 1 NC_003197.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 4655271 ppa 1255940 ppa Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inorganic pyrophosphatase NP_463275.1 4654741 R 99287 CDS NP_463276.1 16767661 1255941 complement(4655498..4656496) 1 NC_003197.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 4656496 fbp 1255941 fbp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fructose-1,6-bisphosphatase NP_463276.1 4655498 R 99287 CDS NP_463277.1 16767662 1255942 4656671..4658050 1 NC_003197.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4658050 mpl 1255942 mpl Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase NP_463277.1 4656671 D 99287 CDS NP_463278.1 16767663 1255943 4658541..4659374 1 NC_003197.1 transcriptional regulator 4659374 1255943 STM4417 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_463278.1 4658541 D 99287 CDS NP_463279.1 16767664 1255944 complement(4659425..4660858) 1 NC_003197.1 sugar transporter 4660858 1255944 STM4418 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar transporter NP_463279.1 4659425 R 99287 CDS NP_463280.1 16767665 1255945 4661317..4662753 1 NC_003197.1 sugar transporter 4662753 1255945 STM4419 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar transporter NP_463280.1 4661317 D 99287 CDS NP_463281.1 16767666 1255946 complement(4663106..4663915) 1 NC_003197.1 inner membrane protein 4663915 1255946 STM4420 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463281.1 4663106 R 99287 CDS NP_463282.1 16767667 1255947 complement(4663940..4665445) 1 NC_003197.1 NAD-dependent aldehyde dehydrogenase 4665445 1255947 STM4421 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NAD-dependent aldehyde dehydrogenase NP_463282.1 4663940 R 99287 CDS NP_463284.1 16767669 1255949 4665886..4666710 1 NC_003197.1 AraC-type DNA-binding domain-containing protein 4666710 1255949 STM4423 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AraC-type DNA-binding domain-containing protein NP_463284.1 4665886 D 99287 CDS NP_463285.2 39546400 1255950 4666985..4667890 1 NC_003197.1 inosose dehydratase 4667890 1255950 STM4424.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inosose dehydratase NP_463285.2 4666985 D 99287 CDS NP_463286.1 16767671 1255951 4667909..4668919 1 NC_003197.1 inositol 2-dehydrogenas 4668919 1255951 STM4425 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inositol 2-dehydrogenas NP_463286.1 4667909 D 99287 CDS NP_463287.1 16767672 1255952 4669016..4670359 1 NC_003197.1 glycosyl hydrolase family protein 4670359 srfJ 1255952 srfJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glycosyl hydrolase family protein NP_463287.1 4669016 D 99287 CDS NP_463288.1 16767673 1255953 4670360..4671193 1 NC_003197.1 endonuclease 4671193 1255953 STM4427 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 endonuclease NP_463288.1 4670360 D 99287 CDS NP_463289.1 16767674 1255954 complement(4671190..4672356) 1 NC_003197.1 major facilitator superfamily transporter 4672356 1255954 STM4428 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 major facilitator superfamily transporter NP_463289.1 4671190 R 99287 CDS NP_463294.1 16767679 1255959 4676890..4677912 1 NC_003197.1 dehydrogenase 4677912 1255959 STM4433 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dehydrogenase NP_463294.1 4676890 D 99287 CDS NP_463295.1 16767680 1255960 4677985..4679211 1 NC_003197.1 permease 4679211 1255960 STM4434 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_463295.1 4677985 D 99287 CDS NP_463296.1 16767681 1255961 4679372..4680187 1 NC_003197.1 cytoplasmic protein 4680187 1255961 STM4435 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463296.1 4679372 D 99287 CDS NP_463297.1 16767682 1255962 4680240..4681124 1 NC_003197.1 endonuclease 4681124 1255962 STM4436 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 endonuclease NP_463297.1 4680240 D 99287 CDS NP_463298.1 16767683 1255963 complement(4681180..4681731) 1 NC_003197.1 hypothetical protein 4681731 1255963 STM4437 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463298.1 4681180 R 99287 CDS NP_463299.1 16767684 1255964 4681827..4683179 1 NC_003197.1 protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptide maturation protein 4683179 pmbA 1255964 pmbA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptide maturation protein NP_463299.1 4681827 D 99287 CDS NP_463300.1 16767685 1255965 4683278..4683664 1 NC_003197.1 cytochrome b562 4683664 cybC 1255965 cybC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytochrome b562 NP_463300.1 4683278 D 99287 CDS NP_463301.1 16767686 1255966 4683942..4684280 1 NC_003197.1 nitrogen regulation protein NR(ii) (SW:NTRB_SALTY); cytoplasmic protein 4684280 1255966 STM4440 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463301.1 4683942 D 99287 CDS NP_463302.1 16767687 1255967 4684291..4684653 1 NC_003197.1 cytoplasmic protein 4684653 1255967 STM4441 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463302.1 4684291 D 99287 CDS NP_463303.1 16767688 1255968 4684653..4684955 1 NC_003197.1 cytoplasmic protein 4684955 1255968 STM4442 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463303.1 4684653 D 99287 CDS NP_463304.1 16767689 1255969 4684978..4685754 1 NC_003197.1 inner membrane protein 4685754 1255969 STM4443 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463304.1 4684978 D 99287 CDS NP_463305.1 16767690 1255970 4685766..4686410 1 NC_003197.1 inner membrane protein 4686410 1255970 STM4444 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463305.1 4685766 D 99287 CDS NP_463306.1 16767691 1255971 4686469..4687602 1 NC_003197.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4687602 1255971 STM4445 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dihydroorotase NP_463306.1 4686469 D 99287 CDS NP_463307.1 16767692 1255972 4687586..4688704 1 NC_003197.1 L-seryl-tRNA selenium transferase; selenocysteine synthase 4688704 1255972 STM4446 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 selenocysteine synthase NP_463307.1 4687586 D 99287 CDS NP_463308.1 16767693 1255973 4688701..4689330 1 NC_003197.1 periplasmic protein 4689330 1255973 STM4447 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_463308.1 4688701 D 99287 CDS NP_463309.1 16767694 1255974 4689457..4691370 1 NC_003197.1 Ntr-type; PTS system mannitol/fructose-specific transporter subunit IIA 4691370 1255974 STM4448 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannitol/fructose-specific transporter subunit IIA NP_463309.1 4689457 D 99287 CDS NP_463310.1 16767695 1255975 4691448..4691690 1 NC_003197.1 Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 4691690 1255975 STM4449 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 bifunctional antitoxin/transcriptional repressor RelB NP_463310.1 4691448 D 99287 CDS NP_463311.1 16767696 1255976 4691680..4691964 1 NC_003197.1 inner membrane protein 4691964 1255976 STM4450 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463311.1 4691680 D 99287 CDS NP_463312.1 16767697 1255977 complement(4691968..4692432) 1 NC_003197.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide-triphosphate reductase-activating protein 4692432 nrdG 1255977 nrdG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic ribonucleotide-triphosphate reductase-activating protein NP_463312.1 4691968 R 99287 CDS NP_463313.1 16767698 1255978 complement(4692553..4694691) 1 NC_003197.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside-triphosphate reductase 4694691 nrdD 1255978 nrdD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 anaerobic ribonucleoside-triphosphate reductase NP_463313.1 4692553 R 99287 CDS NP_945171.1 39546401 2673768 4694896..4695066 1 NC_003197.1 hypothetical protein 4695066 2673768 STM4452.1N Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945171.1 4694896 D 99287 CDS NP_463314.1 16767699 1255979 complement(4695100..4696752) 1 NC_003197.1 trehalose-6-phosphate hydrolase 4696752 treC 1255979 treC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 trehalose-6-phosphate hydrolase NP_463314.1 4695100 R 99287 CDS NP_463315.1 16767700 1255981 complement(4698357..4699304) 1 NC_003197.1 regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; HTH-type transcriptional regulator TreR 4699304 treR 1255981 treR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 HTH-type transcriptional regulator TreR NP_463315.1 4698357 R 99287 CDS NP_463316.1 16767701 1255982 4699688..4702396 1 NC_003197.1 P-type ATPase involved in magnesium influx; magnesium-transporting ATPase 4702396 mgtA 1255982 mgtA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 magnesium-transporting ATPase NP_463316.1 4699688 D 99287 CDS NP_463317.1 16767702 1255983 complement(4702512..4702958) 1 NC_003197.1 transposase 4702958 1255983 STM4457 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transposase NP_463317.1 4702512 R 99287 CDS NP_463318.1 16767703 1255984 complement(4703033..4703419) 1 NC_003197.1 enamine/imine deaminase 4703419 yjgF 1255984 yjgF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 enamine/imine deaminase NP_463318.1 4703033 R 99287 CDS NP_463319.1 16767704 1255985 complement(4703496..4703957) 1 NC_003197.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit 4703957 pyrI 1255985 pyrI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aspartate carbamoyltransferase regulatory subunit NP_463319.1 4703496 R 99287 CDS NP_463320.1 16767705 1255986 complement(4703970..4704905) 1 NC_003197.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 4704905 pyrB 1255986 pyrB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aspartate carbamoyltransferase catalytic subunit NP_463320.1 4703970 R 99287 CDS NP_463321.1 16767706 1255987 complement(4704941..4705042) 1 NC_003197.1 pyrBI operon leader peptide (attenuator) (SW:LPPY_SALTY); contains a frameshift and premature stop as compared to Escherichia coli pyrBI operon leader peptide; pyrBI operon leader peptide 4705042 pyrL 1255987 pyrL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyrBI operon leader peptide NP_463321.1 4704941 R 99287 CDS NP_463323.1 16767708 1255989 complement(4705132..4705620) 1 NC_003197.1 arginine repressor 4705620 1255989 STM4463 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arginine repressor NP_463323.1 4705132 R 99287 CDS NP_463324.1 16767709 1255990 complement(4705807..4707210) 1 NC_003197.1 arginine repressor 4707210 1255990 STM4464 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arginine repressor NP_463324.1 4705807 R 99287 CDS NP_463325.1 16767710 1255991 complement(4707266..4708270) 1 NC_003197.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 4708270 1255991 STM4465 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ornithine carbamoyltransferase NP_463325.1 4707266 R 99287 CDS NP_463326.1 16767711 1255992 complement(4708382..4709314) 1 NC_003197.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 4709314 1255992 STM4466 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carbamate kinase NP_463326.1 4708382 R 99287 CDS NP_463327.1 16767712 1255993 complement(4709325..4710545) 1 NC_003197.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 4710545 1255993 STM4467 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 arginine deiminase NP_463327.1 4709325 R 99287 CDS NP_463328.1 16767713 1255994 4711221..4711673 1 NC_003197.1 cytoplasmic protein 4711673 yjgK 1255994 yjgK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463328.1 4711221 D 99287 CDS NP_463329.1 16767714 1255995 complement(4711747..4712751) 1 NC_003197.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.; ornithine carbamoyltransferase 4712751 argI 1255995 argI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ornithine carbamoyltransferase NP_463329.1 4711747 R 99287 CDS NP_463330.1 16767715 1255996 4712917..4713333 1 NC_003197.1 hypothetical 15.7 dda protein in argI-miaE intergenic region (ORF15.6) (SW:YJGD_SALTY); ribonuclease regulator 4713333 yjgD 1255996 yjgD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribonuclease regulator NP_463330.1 4712917 D 99287 CDS NP_463331.1 16767716 1255997 4713345..4714157 1 NC_003197.1 tRNA-hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA (SW:MIAE_SALTY); tRNA-(ms[2]io[6]A)-hydroxylase 4714157 miaE 1255997 miaE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA-(ms[2]io[6]A)-hydroxylase NP_463331.1 4713345 D 99287 CDS NP_463332.1 16767717 1255998 complement(4714391..4714879) 1 NC_003197.1 hypothetical 17.8 kKa protein in miaE 3'region (ORF 17.8) (SW:YTGA_SALTY); hypothetical protein 4714879 1255998 STM4472 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463332.1 4714391 R 99287 CDS NP_463333.1 16767718 1255999 complement(4714986..4715489) 1 NC_003197.1 hypothetical 18.3 kDa protein in miaE 3'region (ORF 18.3) (SW:YJGM_SALTY); acetyltransferase 4715489 yjgM 1255999 yjgM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 acetyltransferase NP_463333.1 4714986 R 99287 CDS NP_463334.1 16767719 1256000 4715684..4716871 1 NC_003197.1 hypothetical protein in miaE 3'region (ORF x) (SW:YJGN_SALTY); inner membrane protein 4716871 yjgN 1256000 yjgN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463334.1 4715684 D 99287 CDS NP_463335.1 16767720 1256001 complement(4717013..4719868) 1 NC_003197.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valine--tRNA ligase 4719868 valS 1256001 valS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 valine--tRNA ligase NP_463335.1 4717013 R 99287 CDS NP_463336.2 39546402 1256002 complement(4719868..4720311) 1 NC_003197.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 4720311 holC 1256002 holC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase III subunit chi NP_463336.2 4719868 R 99287 CDS NP_463337.1 16767722 1256003 complement(4720448..4721959) 1 NC_003197.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; cytosol aminopeptidase 4721959 pepA 1256003 pepA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytosol aminopeptidase NP_463337.1 4720448 R 99287 CDS NP_463338.1 16767723 1256004 complement(4722003..4722122) 1 NC_003197.1 cytoplasmic protein 4722122 1256004 STM4478 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463338.1 4722003 R 99287 CDS NP_463339.1 16767724 1256005 4722354..4723454 1 NC_003197.1 permease 4723454 yjgP 1256005 yjgP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_463339.1 4722354 D 99287 CDS NP_463340.1 16767725 1256006 4723454..4724536 1 NC_003197.1 permease 4724536 yjgQ 1256006 yjgQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 permease NP_463340.1 4723454 D 99287 CDS NP_463341.1 16767726 1256007 complement(4724731..4725729) 1 NC_003197.1 L-idonate regulator 4725729 idnR 1256007 idnR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-idonate regulator NP_463341.1 4724731 R 99287 CDS NP_463342.1 16767727 1256008 complement(4725793..4727112) 1 NC_003197.1 GntP family L-idonate transport protein 4727112 idnT 1256008 idnT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GntP family L-idonate transport protein NP_463342.1 4725793 R 99287 CDS NP_463343.1 16767728 1256009 complement(4727174..4727938) 1 NC_003197.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; 5-keto-D-gluconate-5-reductase 4727938 idnO 1256009 idnO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 5-keto-D-gluconate-5-reductase NP_463343.1 4727174 R 99287 CDS NP_463344.1 16767729 1256010 complement(4727963..4728994) 1 NC_003197.1 NAD-binding; L-idonate 5-dehydrogenase 4728994 idnD 1256010 idnD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 L-idonate 5-dehydrogenase NP_463344.1 4727963 R 99287 CDS NP_463345.1 16767730 1256011 4729211..4729741 1 NC_003197.1 D-gluconate kinase 4729741 idnK 1256011 idnK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 D-gluconate kinase NP_463345.1 4729211 D 99287 CDS NP_463346.1 16767731 1256012 complement(4729769..4730788) 1 NC_003197.1 alcohol dehydrogenase 4730788 yjgB 1256012 yjgB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alcohol dehydrogenase NP_463346.1 4729769 R 99287 CDS NP_463347.1 16767732 1256014 4731314..4731601 1 NC_003197.1 integrase 4731601 1256014 STM4488 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 integrase NP_463347.1 4731314 D 99287 CDS NP_463348.1 16767733 1256015 4731963..4735478 1 NC_003197.1 DNA helicase 4735478 1256015 STM4489 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA helicase NP_463348.1 4731963 D 99287 CDS NP_463349.1 16767734 1256016 4735575..4736564 1 NC_003197.1 Mrr; restriction endonuclease 4736564 1256016 STM4490 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 restriction endonuclease NP_463349.1 4735575 D 99287 CDS NP_463350.1 16767735 1256017 complement(4736677..4738761) 1 NC_003197.1 ATP-dependent Lon protease 4738761 1256017 STM4491 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ATP-dependent Lon protease NP_463350.1 4736677 R 99287 CDS NP_463351.1 16767736 1256018 complement(4738772..4741369) 1 NC_003197.1 cytoplasmic protein 4741369 1256018 STM4492 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463351.1 4738772 R 99287 CDS NP_463352.1 16767737 1256019 complement(4741372..4742193) 1 NC_003197.1 cytoplasmic protein 4742193 1256019 STM4493 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463352.1 4741372 R 99287 CDS NP_463353.1 16767738 1256020 complement(4742171..4743262) 1 NC_003197.1 sugar/spermidine/putrescine ABC transporter ATPase 4743262 1256020 STM4494 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar/spermidine/putrescine ABC transporter ATPase NP_463353.1 4742171 R 99287 CDS NP_463354.1 16767739 1256021 complement(4743262..4746939) 1 NC_003197.1 type II restriction enzyme methylase subunit 4746939 1256021 STM4495 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 type II restriction enzyme methylase subunit NP_463354.1 4743262 R 99287 CDS NP_463355.1 16767740 1256022 complement(4746985..4750626) 1 NC_003197.1 DNA repair ATPase 4750626 1256022 STM4496 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA repair ATPase NP_463355.1 4746985 R 99287 CDS NP_463356.1 16767741 1256023 complement(4750638..4751240) 1 NC_003197.1 cytoplasmic protein 4751240 1256023 STM4497 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463356.1 4750638 R 99287 CDS NP_463357.1 16767742 1256024 complement(4751237..4751839) 1 NC_003197.1 inner membrane protein 4751839 1256024 STM4498 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463357.1 4751237 R 99287 CDS NP_463358.2 161353571 1256025 complement(4752665..4753381) 1 NC_003197.1 transcriptional regulator 4753381 yeeN 1256025 yeeN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_463358.2 4752665 R 99287 CDS NP_463359.1 16767744 1256026 complement(4753941..4755572) 1 NC_003197.1 SAM-dependent methyltransferase 4755572 yjhP 1256026 yjhP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SAM-dependent methyltransferase NP_463359.1 4753941 R 99287 CDS NP_463360.1 16767745 1256027 complement(4755577..4755834) 1 NC_003197.1 hypothetical protein 4755834 1256027 STM4501 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463360.1 4755577 R 99287 CDS NP_463361.1 16767746 1256028 4756323..4756931 1 NC_003197.1 cytoplasmic protein 4756931 1256028 STM4502 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463361.1 4756323 D 99287 CDS NP_463362.1 16767747 1256029 4757441..4758178 1 NC_003197.1 inner membrane protein 4758178 1256029 STM4503 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463362.1 4757441 D 99287 CDS NP_463363.1 16767748 1256030 4758454..4759365 1 NC_003197.1 IicA; cytoplasmic protein 4759365 1256030 STM4504 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463363.1 4758454 D 99287 CDS NP_463364.1 16767749 1256031 4759570..4760031 1 NC_003197.1 inner membrane or exported; hypothetical protein 4760031 1256031 STM4505 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463364.1 4759570 D 99287 CDS NP_463365.1 16767750 1256032 complement(4760028..4760702) 1 NC_003197.1 dienelactone hydrolase 4760702 1256032 STM4506 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 dienelactone hydrolase NP_463365.1 4760028 R 99287 CDS NP_463366.1 16767751 1256033 4761052..4761825 1 NC_003197.1 regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 4761825 uxuR 1256033 uxuR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional repressor UxuR NP_463366.1 4761052 D 99287 CDS NP_463367.1 16767752 1256034 complement(4761826..4762839) 1 NC_003197.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 4762839 trpS2 1256034 trpS2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tryptophanyl-tRNA synthetase II NP_463367.1 4761826 R 99287 CDS NP_945172.1 39546403 2673744 4763136..4763288 1 NC_003197.1 hypothetical protein 4763288 2673744 STM4508.1N Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_945172.1 4763136 D 99287 CDS NP_463368.2 39546404 1256035 4763641..4764087 1 NC_003197.1 hypothetical protein 4764087 1256035 STM4509.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463368.2 4763641 D 99287 CDS NP_463369.1 16767754 1256036 4764326..4765060 1 NC_003197.1 aspartate racemase 4765060 1256036 STM4510 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 aspartate racemase NP_463369.1 4764326 D 99287 CDS NP_463370.1 16767755 1256037 complement(4765066..4765974) 1 NC_003197.1 LysR family transcriptional regulator 4765974 yjiE 1256037 yjiE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LysR family transcriptional regulator NP_463370.1 4765066 R 99287 CDS NP_463371.1 16767756 1256038 complement(4766093..4767265) 1 NC_003197.1 isoaspartyl dipeptidase 4767265 iadA 1256038 iadA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 isoaspartyl dipeptidase NP_463371.1 4766093 R 99287 CDS NP_463372.1 16767757 1256039 complement(4767278..4767739) 1 NC_003197.1 inner membrane protein 4767739 yjiG 1256039 yjiG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463372.1 4767278 R 99287 CDS NP_463373.2 39546405 1256040 complement(4767736..4768407) 1 NC_003197.1 inner membrane protein 4768407 yjiH 1256040 yjiH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463373.2 4767736 R 99287 CDS NP_463374.1 16767759 1256041 complement(4769280..4770464) 1 NC_003197.1 sugar transporter 4770464 yjiJ 1256041 yjiJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sugar transporter NP_463374.1 4769280 R 99287 CDS NP_463375.1 16767760 1256042 complement(4770684..4771955) 1 NC_003197.1 inner membrane protein 4771955 yjiN 1256042 yjiN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463375.1 4770684 R 99287 CDS NP_463376.1 16767761 1256043 complement(4772042..4773283) 1 NC_003197.1 multidrug resistance protein MdtM 4773283 yjiO 1256043 yjiO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multidrug resistance protein MdtM NP_463376.1 4772042 R 99287 CDS NP_463377.1 16767762 1256044 4773762..4774277 1 NC_003197.1 inner membrane protein 4774277 1256044 STM4518 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463377.1 4773762 D 99287 CDS NP_463378.1 16767763 1256045 4774458..4775828 1 NC_003197.1 NAD-dependent aldehyde dehydrogenase 4775828 1256045 STM4519 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NAD-dependent aldehyde dehydrogenase NP_463378.1 4774458 D 99287 CDS NP_463379.1 16767764 1256046 complement(4775923..4776066) 1 NC_003197.1 cytoplasmic protein 4776066 1256046 STM4520 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463379.1 4775923 R 99287 CDS NP_463380.1 16767765 1256047 4776033..4776197 1 NC_003197.1 cytoplasmic protein 4776197 yjiS 1256047 yjiS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463380.1 4776033 D 99287 CDS NP_463381.1 16767766 1256048 complement(4776272..4776973) 1 NC_003197.1 inner membrane protein 4776973 1256048 STM4522 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463381.1 4776272 R 99287 CDS NP_463382.1 16767767 1256049 complement(4777047..4777379) 1 NC_003197.1 involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response; endoribonuclease SymE 4777379 yjiW 1256049 yjiW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 endoribonuclease SymE NP_463382.1 4777047 R 99287 CDS NP_463383.1 16767768 1256050 complement(4777606..4779015) 1 NC_003197.1 S protein; STYSJI specificity protein (SW:T1S_SALTY); specificity determinant for hsdM and hsdR; type I restriction enzyme specificity protein 4779015 hsdS 1256050 hsdS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 type I restriction enzyme specificity protein NP_463383.1 4777606 R 99287 CDS NP_463384.1 16767769 1256051 complement(4779012..4780601) 1 NC_003197.1 type I restriction enzyme STYSJI Mm protein (SW:T1M_SALTY); host modification; type I restriction enzyme methylase 4780601 hsdM 1256051 hsdM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 type I restriction enzyme methylase NP_463384.1 4779012 R 99287 CDS NP_463385.1 16767770 1256052 complement(4780759..4784268) 1 NC_003197.1 restriction endonuclease; the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'; subunit R is required for both nuclease and ATPase activities; endonuclease R 4784268 hsdR 1256052 hsdR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 endonuclease R NP_463385.1 4780759 R 99287 CDS NP_463386.1 16767771 1256053 4784466..4785380 1 NC_003197.1 methylated adenine/cytosine restriction protein 4785380 mrr 1256053 mrr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methylated adenine/cytosine restriction protein NP_463386.1 4784466 D 99287 CDS NP_463387.1 16767772 1256054 4785649..4785936 1 NC_003197.1 inner membrane protein 4785936 1256054 STM4528 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463387.1 4785649 D 99287 CDS NP_463388.1 16767773 1256055 4785923..4786225 1 NC_003197.1 cytoplasmic protein 4786225 1256055 STM4529 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463388.1 4785923 D 99287 CDS NP_463389.1 16767774 1256056 complement(4786300..4787256) 1 NC_003197.1 GTPase 4787256 yjiA 1256056 yjiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GTPase NP_463389.1 4786300 R 99287 CDS NP_463390.1 16767775 1256057 complement(4787267..4787470) 1 NC_003197.1 cytoplasmic protein 4787470 yjiX 1256057 yjiX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463390.1 4787267 R 99287 CDS NP_463391.1 16767776 1256058 complement(4787565..4789715) 1 NC_003197.1 carbon starvation protein 4789715 yjiY 1256058 yjiY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 carbon starvation protein NP_463391.1 4787565 R 99287 CDS NP_463392.1 16767777 1256059 4790082..4791743 1 NC_003197.1 methyl-accepting chemotaxis protein I 4791743 tsr 1256059 tsr Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 methyl-accepting chemotaxis protein I NP_463392.1 4790082 D 99287 CDS NP_463393.1 16767778 1256060 4792067..4794832 1 NC_003197.1 NtrC family transcriptional regulator 4794832 1256060 STM4534 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NtrC family transcriptional regulator NP_463393.1 4792067 D 99287 CDS NP_463394.1 16767779 1256061 4794934..4795356 1 NC_003197.1 PTS system mannose-specific transporter subunit IIA 4795356 1256061 STM4535 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannose-specific transporter subunit IIA NP_463394.1 4794934 D 99287 CDS NP_463395.1 16767780 1256062 4795371..4795832 1 NC_003197.1 PTS system mannose-specific transporter subunit IIB 4795832 1256062 STM4536 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannose-specific transporter subunit IIB NP_463395.1 4795371 D 99287 CDS NP_463396.1 16767781 1256063 4795858..4796637 1 NC_003197.1 PTS system mannose-specific transporter subunit IIC 4796637 1256063 STM4537 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannose-specific transporter subunit IIC NP_463396.1 4795858 D 99287 CDS NP_463397.1 16767782 1256064 4796627..4797463 1 NC_003197.1 PTS system mannose-specific transporter subunit IID 4797463 1256064 STM4538 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 PTS system mannose-specific transporter subunit IID NP_463397.1 4796627 D 99287 CDS NP_463398.1 16767783 1256065 4797476..4798537 1 NC_003197.1 glucosamine-fructose-6-phosphate aminotransferase 4798537 1256065 STM4539 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucosamine-fructose-6-phosphate aminotransferase NP_463398.1 4797476 D 99287 CDS NP_463399.2 39546406 1256066 4798555..4799565 1 NC_003197.1 glucosamine-fructose-6-phosphate aminotransferase 4799565 1256066 STM4540.S Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 glucosamine-fructose-6-phosphate aminotransferase NP_463399.2 4798555 D 99287 CDS NP_463400.2 161353570 1256067 complement(4799699..4801990) 1 NC_003197.1 catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I 4801990 mdoB 1256067 mdoB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoglycerol transferase I NP_463400.2 4799699 R 99287 CDS NP_463401.1 16767786 1256068 complement(4802273..4802734) 1 NC_003197.1 outer membrane protein 4802734 yjjA 1256068 yjjA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_463401.1 4802273 R 99287 CDS NP_463402.1 16767787 1256069 complement(4802792..4803529) 1 NC_003197.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 4803529 dnaC 1256069 dnaC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA replication protein DnaC NP_463402.1 4802792 R 99287 CDS NP_463403.1 16767788 1256070 complement(4803532..4804071) 1 NC_003197.1 This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'; primosomal protein I 4804071 dnaT 1256070 dnaT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 primosomal protein I NP_463403.1 4803532 R 99287 CDS NP_463404.1 16767789 1256071 complement(4804164..4804637) 1 NC_003197.1 hypothetical protein 4804637 1256071 STM4545 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463404.1 4804164 R 99287 CDS NP_463405.1 16767790 1256072 complement(4804628..4805539) 1 NC_003197.1 membrane protein 4805539 yjjP 1256072 yjjP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane protein NP_463405.1 4804628 R 99287 CDS NP_463406.1 16767791 1256073 4806117..4806842 1 NC_003197.1 LuxR/UhpA family transcriptional regulator 4806842 yjjQ 1256073 yjjQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LuxR/UhpA family transcriptional regulator NP_463406.1 4806117 D 99287 CDS NP_463407.2 161353569 1256074 4806854..4807477 1 NC_003197.1 regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; DNA-binding transcriptional activator BglJ 4807477 bglJ 1256074 bglJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding transcriptional activator BglJ NP_463407.2 4806854 D 99287 CDS NP_463408.1 16767793 1256075 complement(4807528..4807986) 1 NC_003197.1 cytoplasmic protein 4807986 1256075 STM4549 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463408.1 4807528 R 99287 CDS NP_463409.1 16767794 1256076 complement(4808137..4808925) 1 NC_003197.1 involved in reduction of ferric iron in cytoplasmic ferrioxamine B; ferric hydroximate transport ferric iron reductase 4808925 fhuF 1256076 fhuF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ferric hydroximate transport ferric iron reductase NP_463409.1 4808137 R 99287 CDS NP_463410.1 16767795 1256077 complement(4809046..4810110) 1 NC_003197.1 contains diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain-containing protein 4810110 1256077 STM4551 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 diguanylate cyclase/phosphodiesterase domain-containing protein NP_463410.1 4809046 R 99287 CDS NP_463411.1 16767796 1256078 4810361..4810597 1 NC_003197.1 inner membrane protein 4810597 1256078 STM4552 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463411.1 4810361 D 99287 CDS NP_463412.1 16767797 1256082 complement(4811138..4812166) 1 NC_003197.1 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; rRNA small subunit methyltransferase C 4812166 rsmC 1256082 rsmC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 rRNA small subunit methyltransferase C NP_463412.1 4811138 R 99287 CDS NP_463413.1 16767798 1256083 4812269..4812706 1 NC_003197.1 with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 4812706 holD 1256083 holD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase III subunit psi NP_463413.1 4812269 D 99287 CDS NP_463414.1 16767799 1256084 4812651..4813097 1 NC_003197.1 alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 4813097 rimI 1256084 rimI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ribosomal-protein-alanine N-acetyltransferase NP_463414.1 4812651 D 99287 CDS NP_463415.2 39546407 1256085 4813119..4813796 1 NC_003197.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 4813796 yjjG 1256085 yjjG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 nucleotidase NP_463415.2 4813119 D 99287 CDS NP_463416.1 16767801 1256086 4813888..4815477 1 NC_003197.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4815477 prfC 1256086 prfC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 peptide chain release factor 3 NP_463416.1 4813888 D 99287 CDS NP_463417.1 16767802 1256087 4815879..4816496 1 NC_003197.1 hyperosmotically inducible periplasmic protein 4816496 osmY 1256087 osmY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hyperosmotically inducible periplasmic protein NP_463417.1 4815879 D 99287 CDS NP_463418.1 16767803 1256088 4816607..4816786 1 NC_003197.1 hypothetical protein 4816786 1256088 STM4562 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_463418.1 4816607 D 99287 CDS NP_463419.1 16767804 1256089 4816910..4817983 1 NC_003197.1 phosphoesterase 4817983 yjjU 1256089 yjjU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoesterase NP_463419.1 4816910 D 99287 CDS NP_463420.1 16767805 1256090 4817980..4818753 1 NC_003197.1 deoxyribonuclease 4818753 yjjV 1256090 yjjV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 deoxyribonuclease NP_463420.1 4817980 D 99287 CDS NP_463421.1 16767806 1256091 complement(4818786..4819649) 1 NC_003197.1 pyruvate formate lyase-activating enzyme 4819649 yjjW 1256091 yjjW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 pyruvate formate lyase-activating enzyme NP_463421.1 4818786 R 99287 CDS NP_463422.1 16767807 1256092 complement(4819621..4821171) 1 NC_003197.1 cytoplasmic protein 4821171 yjjI 1256092 yjjI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 cytoplasmic protein NP_463422.1 4819621 R 99287 CDS NP_463423.1 16767808 1256093 4821413..4822210 1 NC_003197.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 4822210 deoC 1256093 deoC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 deoxyribose-phosphate aldolase NP_463423.1 4821413 D 99287 CDS NP_463424.1 16767809 1256094 4822334..4823656 1 NC_003197.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 4823656 deoA 1256094 deoA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 thymidine phosphorylase NP_463424.1 4822334 D 99287 CDS NP_463425.1 16767810 1256095 4823708..4824931 1 NC_003197.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 4824931 deoB 1256095 deoB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphopentomutase NP_463425.1 4823708 D 99287 CDS NP_463426.1 16767811 1256096 4825141..4825860 1 NC_003197.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4825860 deoD 1256096 deoD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 purine nucleoside phosphorylase NP_463426.1 4825141 D 99287 CDS NP_463427.1 16767812 1256097 complement(4825898..4826470) 1 NC_003197.1 outer membrane protein 4826470 1256097 STM4571 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_463427.1 4825898 R 99287 CDS NP_463428.1 16767813 1256098 complement(4826467..4828875) 1 NC_003197.1 fimbrial usher protein 4828875 stjB 1256098 stjB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial usher protein NP_463428.1 4826467 R 99287 CDS NP_463429.1 16767814 1256099 complement(4828889..4829596) 1 NC_003197.1 member of the periplasmic pilus chaperone family of proteins; fimbrial chaparone protein 4829596 stjC 1256099 stjC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial chaparone protein NP_463429.1 4828889 R 99287 CDS NP_463430.1 16767815 1256100 complement(4829674..4830363) 1 NC_003197.1 outer membrane protein 4830363 1256100 STM4574 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_463430.1 4829674 R 99287 CDS NP_463431.1 16767816 1256101 complement(4830411..4831100) 1 NC_003197.1 outer membrane protein 4831100 1256101 STM4575 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_463431.1 4830411 R 99287 CDS NP_463432.1 16767817 1256102 complement(4831413..4832429) 1 NC_003197.1 Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; lipoate-protein ligase A 4832429 lplA 1256102 lplA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lipoate-protein ligase A NP_463432.1 4831413 R 99287 CDS NP_463433.1 16767818 1256103 complement(4832463..4833107) 1 NC_003197.1 membrane protein; transcribed divergently from serB; membrane protein 4833107 smp 1256103 smp Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 membrane protein NP_463433.1 4832463 R 99287 CDS NP_463434.1 16767819 1256104 4833224..4834192 1 NC_003197.1 catalyzes the formation of serine from O-phosphoserine; 3-phosphoserine phosphatase 4834192 serB 1256104 serB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3-phosphoserine phosphatase NP_463434.1 4833224 D 99287 CDS NP_463435.1 16767820 1256105 4834276..4835658 1 NC_003197.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4835658 radA 1256105 radA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA repair protein RadA NP_463435.1 4834276 D 99287 CDS NP_463436.4 409994448 1256106 4835782..4837041 1 NC_003197.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; also has a regulatory function; multifunctional DNA-binding transcriptional repressor/NMN adenylyltransferase/ribosylnicotinamide kinase 4837041 nadR 1256106 nadR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 multifunctional DNA-binding transcriptional repressor/NMN adenylyltransferase/ribosylnicotinamide kinase NP_463436.4 4835782 D 99287 CDS NP_463437.1 16767822 1256107 complement(4837159..4838826) 1 NC_003197.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 4838826 yjjK 1256107 yjjK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ABC transporter ATP-binding protein NP_463437.1 4837159 R 99287 CDS NP_463438.2 161353568 1256108 4839035..4840972 1 NC_003197.1 catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 4840972 slt 1256108 slt Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 lytic murein transglycosylase NP_463438.2 4839035 D 99287 CDS NP_463439.1 16767824 1256109 4841030..4841356 1 NC_003197.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 4841356 trpR 1256109 trpR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Trp operon repressor NP_463439.1 4841030 D 99287 CDS NP_463440.1 16767825 1256110 complement(4841458..4841973) 1 NC_003197.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; non-canonical purine NTP phosphatase 4841973 yjjX 1256110 yjjX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 non-canonical purine NTP phosphatase NP_463440.1 4841458 R 99287 CDS NP_463441.1 16767826 1256111 4842022..4842669 1 NC_003197.1 catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 4842669 gpmB 1256111 gpmB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 phosphoglycerate mutase NP_463441.1 4842022 D 99287 CDS NP_463442.1 16767827 1256112 complement(4842666..4843535) 1 NC_003197.1 transcriptional regulator 4843535 rob 1256112 rob Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 transcriptional regulator NP_463442.1 4842666 R 99287 CDS NP_463443.1 16767828 1256113 4843747..4844220 1 NC_003197.1 catabolite regulation protein A 4844220 creA 1256113 creA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 catabolite regulation protein A NP_463443.1 4843747 D 99287 CDS NP_463444.1 16767829 1256114 4844233..4844922 1 NC_003197.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4844922 creB 1256114 creB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA-binding response regulator CreB NP_463444.1 4844233 D 99287 CDS NP_463445.1 16767830 1256115 4844922..4846346 1 NC_003197.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4846346 creC 1256115 creC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sensory histidine kinase CreC NP_463445.1 4844922 D 99287 CDS NP_463446.1 16767831 1256116 4846404..4847753 1 NC_003197.1 inner membrane protein 4847753 creD 1256116 creD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463446.1 4846404 D 99287 CDS NP_463447.1 16767832 1256117 complement(4847811..4848896) 1 NC_003197.1 major fimbrial subunit 4848896 sthE 1256117 sthE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 major fimbrial subunit NP_463447.1 4847811 R 99287 CDS NP_463448.1 16767833 1256118 complement(4848937..4849494) 1 NC_003197.1 fimbrial subunit 4849494 sthD 1256118 sthD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial subunit NP_463448.1 4848937 R 99287 CDS NP_463449.1 16767834 1256119 complement(4849512..4852049) 1 NC_003197.1 fimbrial usher protein 4852049 sthB 1256119 sthB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial usher protein NP_463449.1 4849512 R 99287 CDS NP_463450.1 16767835 1256120 complement(4852095..4852778) 1 NC_003197.1 fimbrial chaperone 4852778 sthA 1256120 sthA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial chaperone NP_463450.1 4852095 R 99287 CDS NP_463451.1 16767836 1256121 complement(4852849..4853394) 1 NC_003197.1 fimbrial chaperone 4853394 1256121 STM4595 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 fimbrial chaperone NP_463451.1 4852849 R 99287 CDS NP_463452.1 16767837 1256122 complement(4853733..4854404) 1 NC_003197.1 inner membrane protein 4854404 1256122 STM4596 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463452.1 4853733 R 99287 CDS NP_463453.1 16767838 1256123 complement(4854789..4855103) 1 NC_003197.1 periplasmic protein 4855103 1256123 STM4597 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 periplasmic protein NP_463453.1 4854789 R 99287 CDS NP_463454.1 16767839 1256124 complement(4855370..4856086) 1 NC_003197.1 two-component response regulator 4856086 arcA 1256124 arcA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 two-component response regulator NP_463454.1 4855370 R 99287 CDS NP_463455.1 16767840 1256125 4856182..4856322 1 NC_003197.1 inner membrane protein 4856322 yjjY 1256125 yjjY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 inner membrane protein NP_463455.1 4856182 D 99287 CDS NP_463456.1 16767841 1256126 4856722..4857408 1 NC_003197.1 member of the SPOUT superfamily of methyltransferases; tRNA/rRNA methyltransferase 4857408 lasT 1256126 lasT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 tRNA/rRNA methyltransferase NP_463456.1 4856722 D 99287 CDS NP_490493.1 17233404 1256238 94..378 1 NC_003277.1 putative cytoplasmic protein 378 1256238 PSLT001 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative cytoplasmic protein NP_490493.1 94 D 99287 CDS NP_490494.1 17233405 1256237 712..1155 1 NC_003277.1 putative phospholipase D 1155 1256237 PSLT002 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative phospholipase D NP_490494.1 712 D 99287 CDS NP_490495.1 17233406 1256235 1334..1600 1 NC_003277.1 replication protein 1600 repC 1256235 repC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 replication protein NP_490495.1 1334 D 99287 CDS NP_490496.1 17233407 1256236 1723..1845 1 NC_003277.1 DNA replication protein 1845 repA3 1256236 repA3 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA replication protein NP_490496.1 1723 D 99287 CDS NP_490497.1 17233408 1256234 1850..1927 1 NC_003277.1 acts to regulate the expression of the plasmid replication protein RepA in the IncFII plasmid group; RepA leader peptide Tap 1927 tap 1256234 tap Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 RepA leader peptide Tap NP_490497.1 1850 D 99287 CDS NP_490498.2 228960845 1256233 1920..2789 1 NC_003277.1 RepA; replication protein 2789 repA 1256233 repA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 replication protein NP_490498.2 1920 D 99287 CDS NP_490499.1 17233410 1256232 3730..3870 1 NC_003277.1 putative outer membrane protein 3870 1256232 PSLT007 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative outer membrane protein NP_490499.1 3730 D 99287 CDS NP_490500.1 17233473 1256231 complement(3967..4725) 1 NC_003277.1 sdiA-regulated gene; putative bacterial helix-turn-helix proteins; member of araC family; rcK; putative regulatory protein 4725 srgC 1256231 srgC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative regulatory protein NP_490500.1 3967 R 99287 CDS NP_490501.1 17233474 1256230 complement(4992..5549) 1 NC_003277.1 srgB; resistance to complement killing 5549 rcK 1256230 rcK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 resistance to complement killing NP_490501.1 4992 R 99287 CDS NP_490502.1 17233475 1256228 complement(5639..6538) 1 NC_003277.1 sdiA-regulated gene; srgA; putative outer membrane protein 6538 srgB 1256228 srgB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative outer membrane protein NP_490502.1 5639 R 99287 CDS NP_490503.1 17233476 1256229 complement(6671..7324) 1 NC_003277.1 sdiA-regulated gene; orf7; putative thiol-disulfide isomerase or thioredoxin 7324 srgA 1256229 srgA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative thiol-disulfide isomerase or thioredoxin NP_490503.1 6671 R 99287 CDS NP_490504.1 17233477 1256227 complement(7569..7919) 1 NC_003277.1 luxR family; pefI; putative regulatory protein 7919 orf7 1256227 orf7 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative regulatory protein NP_490504.1 7569 R 99287 CDS NP_490505.1 17233478 1256226 complement(7904..8116) 1 NC_003277.1 plasmid-encoded fimbriae; orf6; regulator 8116 pefI 1256226 pefI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulator NP_490505.1 7904 R 99287 CDS NP_490506.1 17233479 1256224 complement(8548..9423) 1 NC_003277.1 orf5; putative outer membrane protein 9423 orf6 1256224 orf6 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative outer membrane protein NP_490506.1 8548 R 99287 CDS NP_490507.1 17233480 1256225 complement(9676..10233) 1 NC_003277.1 pefD; putative outer membrane protein 10233 orf5 1256225 orf5 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative outer membrane protein NP_490507.1 9676 R 99287 CDS NP_490508.1 17233481 1256223 complement(10248..10940) 1 NC_003277.1 plasmid-encoded fimbriae; pefC; chaperone 10940 pefD 1256223 pefD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chaperone NP_490508.1 10248 R 99287 CDS NP_490509.1 17233482 1256222 complement(10933..13341) 1 NC_003277.1 plasmid-encoded fimbriae; pefA; usher protein 13341 pefC 1256222 pefC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 usher protein NP_490509.1 10933 R 99287 CDS NP_490510.1 17233483 1256221 complement(13569..14087) 1 NC_003277.1 plasmid-encoded fimbriae; pefB; major fimbrial subunit 14087 pefA 1256221 pefA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 major fimbrial subunit NP_490510.1 13569 R 99287 CDS NP_490511.1 17233484 1256219 complement(14362..14664) 1 NC_003277.1 plasmid-encoded fimbriae; regulatory protein 14664 pefB 1256219 pefB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_490511.1 14362 R 99287 CDS NP_490513.1 17233485 1256216 complement(16636..17625) 1 NC_003277.1 DNA replication protein 17625 repA2 1256216 repA2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA replication protein NP_490513.1 16636 R 99287 CDS NP_490514.1 17233412 1256217 17369..17677 1 NC_003277.1 hypothetical protein 17677 1256217 PSLT024 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_490514.1 17369 D 99287 CDS NP_490515.1 17233486 1256215 complement(18119..18415) 1 NC_003277.1 putative cytoplasmic protein 18415 1256215 PSLT025 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative cytoplasmic protein NP_490515.1 18119 R 99287 CDS NP_490516.1 17233487 1256213 complement(18899..19420) 1 NC_003277.1 putative periplasmic protein 19420 1256213 PSLT026 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative periplasmic protein NP_490516.1 18899 R 99287 CDS NP_490517.1 17233413 1256214 20096..20314 1 NC_003277.1 toxin addiction system; plasmid maintenance protein CcdA 20314 ccdA 1256214 ccdA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 plasmid maintenance protein CcdA NP_490517.1 20096 D 99287 CDS NP_490518.1 17233414 1256209 20316..20621 1 NC_003277.1 controlled cell death protein; post-segregation toxin; toxin addiction system; plasmid maintenance protein CcdB 20621 ccdB 1256209 ccdB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 plasmid maintenance protein CcdB NP_490518.1 20316 D 99287 CDS NP_490519.1 17233415 1256212 20623..20913 1 NC_003277.1 putative cytoplasmic protein 20913 1256212 PSLT029 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative cytoplasmic protein NP_490519.1 20623 D 99287 CDS NP_490520.1 17233416 1256211 20910..21431 1 NC_003277.1 putative cytoplasmic protein 21431 1256211 PSLT030 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative cytoplasmic protein NP_490520.1 20910 D 99287 CDS NP_490521.1 17233417 1256210 21466..22248 1 NC_003277.1 resolvase 22248 rsdB 1256210 rsdB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 resolvase NP_490521.1 21466 D 99287 CDS NP_490522.1 17233418 1256207 22257..22808 1 NC_003277.1 putative diguanylate cyclase/phosphodiesterase 22808 1256207 PSLT032 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative diguanylate cyclase/phosphodiesterase NP_490522.1 22257 D 99287 CDS NP_861530.1 32441710 1256208 22974..23483 1 NC_003277.1 similar to orf from Salmonella enteritidis virulence plasmid; hypothetical protein 23483 1256208 PSLT032.1N Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_861530.1 22974 D 99287 CDS NP_490523.1 17233419 1256205 23477..23962 1 NC_003277.1 putative inner membrane protein 23962 1256205 PSLT033 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative inner membrane protein NP_490523.1 23477 D 99287 CDS NP_490526.1 17233421 1256203 25877..26140 1 NC_003277.1 IS200-like; putative transposase 26140 1256203 PSLT036 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative transposase NP_490526.1 25877 D 99287 CDS NP_490527.1 17233489 1256202 complement(26267..26917) 1 NC_003277.1 Salmonella typhimurium plasmid virulence protein; hydrophilic protein 26917 spvD 1256202 spvD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrophilic protein NP_490527.1 26267 R 99287 CDS NP_490528.1 17233490 1256201 complement(27178..27903) 1 NC_003277.1 Salmonella typhimurium plasmid virulence protein; hydrophilic protein 27903 spvC 1256201 spvC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrophilic protein NP_490528.1 27178 R 99287 CDS NP_490529.1 17233491 1256199 complement(28191..29966) 1 NC_003277.1 Salmonella typhimurium plasmid virulence protein; hydrophilic protein 29966 spvB 1256199 spvB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hydrophilic protein NP_490529.1 28191 R 99287 CDS NP_490530.1 17233492 1256200 complement(30148..30915) 1 NC_003277.1 Salmonella typhimurium plasmid virulence protein; spvR; outer membrane protein 30915 spvA 1256200 spvA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 outer membrane protein NP_490530.1 30148 R 99287 CDS NP_490531.1 17233493 1256197 complement(31427..32320) 1 NC_003277.1 Salmonella typhimurium plasmid virulence protein; lysR family; regulator of spv operon 32320 spvR 1256197 spvR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulator of spv operon NP_490531.1 31427 R 99287 CDS NP_490532.1 17233422 1256195 32929..33966 1 NC_003277.1 putative integrase protein 33966 1256195 PSLT042 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative integrase protein NP_490532.1 32929 D 99287 CDS NP_490533.1 17233494 1256196 complement(34155..35180) 1 NC_003277.1 similar to ExeA protein; type II secretion system protein 35180 1256196 PSLT043 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 type II secretion system protein NP_490533.1 34155 R 99287 CDS NP_490534.1 17233495 1256194 complement(35113..36777) 1 NC_003277.1 putative integrase protein 36777 rlgA 1256194 rlgA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative integrase protein NP_490534.1 35113 R 99287 CDS NP_490535.1 17233496 1256192 complement(36761..37321) 1 NC_003277.1 putative resolvase 37321 1256192 PSLT045 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative resolvase NP_490535.1 36761 R 99287 CDS NP_490536.1 17233497 1256193 complement(37528..38268) 1 NC_003277.1 putative carbonic anhydrase 38268 1256193 PSLT046 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative carbonic anhydrase NP_490536.1 37528 R 99287 CDS NP_490537.1 17233498 1256191 complement(38923..39411) 1 NC_003277.1 putative cytoplasmic protein 39411 1256191 PSLT047 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative cytoplasmic protein NP_490537.1 38923 R 99287 CDS NP_490538.1 17233423 1256190 39670..40785 1 NC_003277.1 alpha-helical coiled-coil protein 40785 tlpA 1256190 tlpA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 alpha-helical coiled-coil protein NP_490538.1 39670 D 99287 CDS NP_861531.1 32441711 1256187 41390..41806 1 NC_003277.1 similar to orf40 from Salmonella enteritidis virulence plasmid; hypothetical protein 41806 1256187 PSLT050.1N Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_861531.1 41390 D 99287 CDS NP_861532.1 32441712 1256188 41908..42429 1 NC_003277.1 hypothetical protein 42429 1256188 PSLT050.2N Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_861532.1 41908 D 99287 CDS NP_490541.1 17233500 1256185 complement(42461..43402) 1 NC_003277.1 putative cytoplasmic protein 43402 1256185 PSLT051 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative cytoplasmic protein NP_490541.1 42461 R 99287 CDS NP_490542.1 17233425 1256186 43817..45022 1 NC_003277.1 plasmid partition protein A 45022 parA 1256186 parA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 plasmid partition protein A NP_490542.1 43817 D 99287 CDS NP_490543.1 17233426 1256184 45019..45996 1 NC_003277.1 plasmid partition protein B 45996 parB 1256184 parB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 plasmid partition protein B NP_490543.1 45019 D 99287 CDS NP_490544.1 17233501 1256183 complement(46078..47352) 1 NC_003277.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 47352 umuC 1256183 umuC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase V subunit UmuC NP_490544.1 46078 R 99287 CDS NP_490545.1 17233502 1256182 complement(47352..47774) 1 NC_003277.1 protection from mutagenesis by UV and mutagens; similar to umuDC operon; SamA 47774 samA 1256182 samA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 SamA NP_490545.1 47352 R 99287 CDS NP_490546.1 17233427 1256180 48285..48755 1 NC_003277.1 putative cytoplasmic protein 48755 1256180 PSLT056 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative cytoplasmic protein NP_490546.1 48285 D 99287 CDS NP_490547.1 17233428 1256181 48748..49104 1 NC_003277.1 putative cytoplasmic protein 49104 1256181 PSLT057 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative cytoplasmic protein NP_490547.1 48748 D 99287 CDS NP_490548.1 17233429 1256178 49486..50166 1 NC_003277.1 putative methylase 50166 1256178 PSLT059 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative methylase NP_490548.1 49486 D 99287 CDS NP_490549.1 17233430 1256177 50166..50387 1 NC_003277.1 putative cytoplasmic protein 50387 1256177 PSLT060 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative cytoplasmic protein NP_490549.1 50166 D 99287 CDS NP_861533.1 32441713 1256175 50443..50856 1 NC_003277.1 hypothetical protein 50856 1256175 PSLT060.1N Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_861533.1 50443 D 99287 CDS NP_490550.1 17233431 1256176 50928..51692 1 NC_003277.1 putative inner membrane protein 51692 1256176 PSLT061 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative inner membrane protein NP_490550.1 50928 D 99287 CDS NP_490551.1 17233432 1256173 52188..52622 1 NC_003277.1 putative cytoplasmic protein 52622 1256173 PSLT062 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative cytoplasmic protein NP_490551.1 52188 D 99287 CDS NP_490552.1 17233433 1256174 52689..53123 1 NC_003277.1 putative cytoplasmic protein 53123 1256174 PSLT063 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative cytoplasmic protein NP_490552.1 52689 D 99287 CDS NP_490553.1 17233434 1256172 53359..53682 1 NC_003277.1 similar to DNA polymerase III theta subunit; putative inner membrane protein 53682 1256172 PSLT064 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative inner membrane protein NP_490553.1 53359 D 99287 CDS NP_490554.1 17233435 1256170 54401..54919 1 NC_003277.1 single-strand DNA binding protein 54919 ssbB 1256170 ssbB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 single-strand DNA binding protein NP_490554.1 54401 D 99287 CDS NP_490555.1 17233436 1256168 54974..55216 1 NC_003277.1 putative cytoplasmic protein 55216 1256168 PSLT067 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative cytoplasmic protein NP_490555.1 54974 D 99287 CDS NP_490556.1 17233437 1256169 55285..57282 1 NC_003277.1 putative ParB-like nuclease 57282 1256169 PSLT068 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative ParB-like nuclease NP_490556.1 55285 D 99287 CDS NP_490557.1 17233438 1256167 57322..57756 1 NC_003277.1 plasmid SOS inhibition; plasmid SOS inhibition protein B 57756 psiB 1256167 psiB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 plasmid SOS inhibition protein B NP_490557.1 57322 D 99287 CDS NP_490558.1 17233439 1256166 57753..58490 1 NC_003277.1 PsiA; plasmid SOS inhibition protein A 58490 psiA 1256166 psiA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 plasmid SOS inhibition protein A NP_490558.1 57753 D 99287 CDS NP_490559.1 17233503 1256164 complement(60129..60599) 1 NC_003277.1 putative transglycosylase 60599 1256164 PSLT072 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative transglycosylase NP_490559.1 60129 R 99287 CDS NP_490560.1 17233440 1256163 61014..61394 1 NC_003277.1 conjugative transfer; DNA-binding protein; conjugal transfer protein TraM 61394 traM 1256163 traM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer protein TraM NP_490560.1 61014 D 99287 CDS NP_490561.1 17233441 1256127 61587..62273 1 NC_003277.1 conjugative transfer; positively regulates transfer operon transcription; negatively regulated by finP; positively regulated by Lrp; regulatory protein 62273 traJ 1256127 traJ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 regulatory protein NP_490561.1 61587 D 99287 CDS NP_490562.1 17233442 1256161 62274..62594 1 NC_003277.1 conjugative transfer; promotes nicking at oriT and transfer operon transcription; conjugal transfer protein TraY 62594 traY 1256161 traY Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer protein TraY NP_490562.1 62274 D 99287 CDS NP_490563.1 17233443 1256159 62636..62998 1 NC_003277.1 conjugative transfer; pilin; conjugal transfer pilin subunit TraA 62998 traA 1256159 traA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer pilin subunit TraA NP_490563.1 62636 D 99287 CDS NP_490564.1 17233444 1256160 63013..63324 1 NC_003277.1 conjugative transfer; conjugal transfer pilus assembly protein TraL 63324 traL 1256160 traL Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer pilus assembly protein TraL NP_490564.1 63013 D 99287 CDS NP_490565.1 17233445 1256158 63346..63912 1 NC_003277.1 conjugative transfer; conjugal transfer pilus assembly protein TraE 63912 traE 1256158 traE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer pilus assembly protein TraE NP_490565.1 63346 D 99287 CDS NP_490566.1 17233446 1256157 63899..64639 1 NC_003277.1 conjugative transfer; conjugal transfer protein TraK 64639 traK 1256157 traK Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer protein TraK NP_490566.1 63899 D 99287 CDS NP_490567.1 17233447 1256155 64639..66060 1 NC_003277.1 conjugative transfer; conjugal transfer pilus assembly protein TraB 66060 traB 1256155 traB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer pilus assembly protein TraB NP_490567.1 64639 D 99287 CDS NP_490568.1 17233448 1256156 66050..66646 1 NC_003277.1 conjugal transfer protein TraP 66646 traP 1256156 traP Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer protein TraP NP_490568.1 66050 D 99287 CDS NP_490569.1 17233449 1256154 66624..66869 1 NC_003277.1 conjugal transfer protein TrbD 66869 trbD 1256154 trbD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer protein TrbD NP_490569.1 66624 D 99287 CDS NP_490570.1 17233450 1256153 66866..67381 1 NC_003277.1 conjugative transfer; putative outer membrane lipoprotein; conjugal transfer protein TraV 67381 traV 1256153 traV Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer protein TraV NP_490570.1 66866 D 99287 CDS NP_490571.1 17233451 1256151 67516..67737 1 NC_003277.1 conjugal transfer protein TraR 67737 traR 1256151 traR Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer protein TraR NP_490571.1 67516 D 99287 CDS NP_490572.1 17233452 1256152 67730..68197 1 NC_003277.1 conjugative transfer; OrfG2 68197 1256152 PSLT087 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 OrfG2 NP_490572.1 67730 D 99287 CDS NP_490573.1 17233453 1256150 68593..71241 1 NC_003277.1 similar to VirB4; conjugal transfer ATP-binding protein TraC 71241 traC 1256150 traC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer ATP-binding protein TraC NP_490573.1 68593 D 99287 CDS NP_490574.1 17233454 1256149 71216..71602 1 NC_003277.1 conjugative transfer; conjugal transfer protein TrbI 71602 trbI 1256149 trbI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer protein TrbI NP_490574.1 71216 D 99287 CDS NP_490575.1 17233455 1256147 71599..72231 1 NC_003277.1 conjugative transfer; conjugal transfer pilus assembly protein TraW 72231 traW 1256147 traW Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer pilus assembly protein TraW NP_490575.1 71599 D 99287 CDS NP_490576.1 17233456 1256148 72228..73220 1 NC_003277.1 conjugative transfer; conjugal transfer pilus assembly protein TraU 73220 traU 1256148 traU Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer pilus assembly protein TraU NP_490576.1 72228 D 99287 CDS NP_490577.1 17233457 1256146 73239..73547 1 NC_003277.1 conjugative transfer; OrfF 73547 1256146 PSLT093 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 OrfF NP_490577.1 73239 D 99287 CDS NP_490578.1 17233458 1256145 73532..74170 1 NC_003277.1 conjugative transfer; conjugal transfer pilus assembly protein TrbC 74170 trbC 1256145 trbC Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer pilus assembly protein TrbC NP_490578.1 73532 D 99287 CDS NP_861534.1 32441714 1256143 74207..74626 1 NC_003277.1 hypothetical protein 74626 1256143 PSLT094.1N Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 hypothetical protein NP_861534.1 74207 D 99287 CDS NP_490579.1 17233459 1256144 74623..76449 1 NC_003277.1 TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN 76449 traN 1256144 traN Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer mating pair stabilization protein TraN NP_490579.1 74623 D 99287 CDS NP_490580.1 17233460 1256142 76460..76675 1 NC_003277.1 conjugal transfer protein TrbE 76675 trbE 1256142 trbE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer protein TrbE NP_490580.1 76460 D 99287 CDS NP_490581.1 17233461 1256140 76687..77436 1 NC_003277.1 type IV secretion system pilus assembly protein; similar to F plasmid TraF; conjugal pilus assembly protein TraF 77436 traF 1256140 traF Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal pilus assembly protein TraF NP_490581.1 76687 D 99287 CDS NP_490582.1 17233462 1256141 77650..77943 1 NC_003277.1 conjugative transfer; conjugal transfer pilin chaperone TraQ 77943 traQ 1256141 traQ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer pilin chaperone TraQ NP_490582.1 77650 D 99287 CDS NP_490583.1 17233463 1256139 77930..78478 1 NC_003277.1 conjugal transfer protein TrbB 78478 trbB 1256139 trbB Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer protein TrbB NP_490583.1 77930 D 99287 CDS NP_490584.1 17233464 1256138 78468..79850 1 NC_003277.1 conjugative transfer; conjugal transfer pilus assembly protein TraH 79850 traH 1256138 traH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer pilus assembly protein TraH NP_490584.1 78468 D 99287 CDS NP_490585.1 17233465 1256136 79847..82669 1 NC_003277.1 conjugative transfer; conjugal transfer mating pair stabilization protein TraG 82669 traG 1256136 traG Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer mating pair stabilization protein TraG NP_490585.1 79847 D 99287 CDS NP_490586.1 17233466 1256137 82685..83179 1 NC_003277.1 conjugative transfer; entry exclusion protein 83179 traS 1256137 traS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 entry exclusion protein NP_490586.1 82685 D 99287 CDS NP_490587.1 17233467 1256135 83215..83946 1 NC_003277.1 conjugative transfer; conjugal transfer surface exclusion protein TraT 83946 traT 1256135 traT Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer surface exclusion protein TraT NP_490587.1 83215 D 99287 CDS NP_490588.1 17233468 1256134 84323..86566 1 NC_003277.1 type IV secretion system coupling protein; similar to F plasmid TraD; conjugal transfer protein TraD 86566 traD 1256134 traD Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer protein TraD NP_490588.1 84323 D 99287 CDS NP_490589.1 17233469 1256132 86566..87285 1 NC_003277.1 conjugative transfer protein 87285 trbH 1256132 trbH Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugative transfer protein NP_490589.1 86566 D 99287 CDS NP_490590.1 17233504 1256133 complement(86575..86973) 1 NC_003277.1 stability determinant protein; plasmid maintenance protein 86973 1256133 PSLT106 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 plasmid maintenance protein NP_490590.1 86575 R 99287 CDS NP_490591.1 17233505 1256131 complement(86973..87203) 1 NC_003277.1 putative cytoplasmic protein 87203 1256131 PSLT107 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative cytoplasmic protein NP_490591.1 86973 R 99287 CDS NP_490592.1 17233470 1256130 87282..92540 1 NC_003277.1 cleaves origin of transfer and unwinds; oriT relaxase; conjugal transfer nickase/helicase TraI 92540 traI 1256130 traI Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer nickase/helicase TraI NP_490592.1 87282 D 99287 CDS NP_490593.1 17233471 1256128 92560..93300 1 NC_003277.1 conjugative transfer; conjugal transfer pilus acetylation protein TraX 93300 traX 1256128 traX Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer pilus acetylation protein TraX NP_490593.1 92560 D 99287 CDS NP_490594.1 17233472 1256129 93355..93918 1 NC_003277.1 conjugative transfer; srgC; conjugal transfer fertility inhibition protein FinO 93918 finO 1256129 finO Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 conjugal transfer fertility inhibition protein FinO NP_490594.1 93355 D 99287 CDS