-- dump date 20140620_055339 -- class Genbank::CDS -- table cds_note -- id note YP_005180216.1 Contains N-terminal signal sequence (SPI-6 associated) YP_005180218.1 Similar to several Rhs proteins e.g. Escherichia coli RhsG accessory genetic element VgrG protein TR:O52672 (EMBL:AF044503) (713 aa) fasta scores: E(): 0, 32.6% id in 580 aa YP_005180436.1 glyoxylate-induced protein YP_005180733.1 note the differing N-terminus when compared to S. typhimurium LT2 YP_005181135.1 Note difference in N-terminus compared to the Salmonella choleraesuis orthologue YP_005181225.1 Similar to Salmonella typhimurium Orf 245 protein orf 245 TR:Q9Z4S4 (EMBL:AJ224978) (245 aa) fasta scores: E(): 0, 99.6% id in 245 aa YP_005181386.1 Note PFAM domain: PF01042 endoribonuclease l-psp family protein YP_005181407.1 note this CDS contains a selenocysteine tRNA suppressible stop codon YP_005182448.1 antitermination protein domain YP_005182449.1 similar to protein involved in salmonella host recognition YP_005182491.1 [ShadowedBy #3672] YP_005182493.1 recT domain YP_005182528.1 [DelayedBy #3726 L=72] YP_005182541.1 [ShorterThan #3739 L=80 S=0] [ShorterThan #3742 L=53 S=0] YP_005182542.1 [ShadowedBy #3742] YP_005182744.1 HilD is a regulator of HilA YP_005183300.1 [OlapWith #4842 L=372 S=99] YP_005183853.1 formate dehydrogenase-O, major subunit fdoG contains a UGA stop codon which is readthrough as an opal codon by the selenocysteine tRNA YP_005184086.1 contains a UGA stop codon which is readthrough as an opal codon by the selenocysteine tRNA YP_005184121.1 Note the PFAM domain PF07110 and database hits to proposed Ethyl tert-butyl ether degradation proteins YP_006203532.1 note the exonuclease domain YP_006203555.1 the weak database hits to Antirestriction protein klcA YP_006203606.1 note the alternate 3 prime gene terminus compared to Col19B